BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019107
(346 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q7M|A Chain A, Cobalamin-Dependent Methionine Synthase (Meth) From
Thermotoga Maritima (Oxidized, Monoclinic)
pdb|1Q7M|B Chain B, Cobalamin-Dependent Methionine Synthase (Meth) From
Thermotoga Maritima (Oxidized, Monoclinic)
pdb|1Q7Q|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From T.
Maritima (Oxidized, Orthorhombic)
pdb|1Q7Q|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From T.
Maritima (Oxidized, Orthorhombic)
pdb|1Q7Z|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+ Complex)
pdb|1Q7Z|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+ Complex)
pdb|1Q8J|A Chain A, Cobalamin-dependent Methionine Synthase (1-566) From
Thermotoga Maritima (cd2+, Hcy, Methyltetrahydrofolate
Complex)
pdb|1Q8J|B Chain B, Cobalamin-dependent Methionine Synthase (1-566) From
Thermotoga Maritima (cd2+, Hcy, Methyltetrahydrofolate
Complex)
pdb|3BOF|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima Complexed With Zn2+ And Homocysteine
pdb|3BOF|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima Complexed With Zn2+ And Homocysteine
pdb|3BOL|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima Complexed With Zn2+
pdb|3BOL|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima Complexed With Zn2+
Length = 566
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/316 (24%), Positives = 135/316 (42%), Gaps = 44/316 (13%)
Query: 24 VVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQG 83
++DG + TE ++G D + + +P +V KVH Y+++G+++I+T ++ AT
Sbjct: 17 LLDGAYGTEFMKYGYDD----LPEELNIKAPDVVLKVHRSYIESGSDVILTNTFGATRMK 72
Query: 84 FEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSY 143
G ++ + ++R +V IA R ++ LV +G
Sbjct: 73 LRKHGLE-DKLDPIVRNAVRIA----------------------RRAAGEKLVFGDIGPT 109
Query: 144 GAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNXXXXXXXXXXX 203
G E G + E E R V I+ G D I FET +
Sbjct: 110 G-------ELPYPLGSTL-FEEFYENFRETVEIMVEEGVDGIIFETFSDILELKAAVLAA 161
Query: 204 XXXG--ITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT-SPRFIHGLI 260
+ + A +F+ K ++G A D + + A+GINC+ P I +
Sbjct: 162 REVSRDVFLIAHMTFDEKG--RSLTGTDPANFAITFDELD-IDALGINCSLGPEEILPIF 218
Query: 261 LSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRT 320
+ + T K +++ PN+G+ E K V ++ DF +I + + G ++FGGCC T
Sbjct: 219 QELSQYTDKFLVVEPNAGKPI-VENGKTVYP--LKPHDFAVHIDSYYELGVNIFGGCCGT 275
Query: 321 TPNTIKAISRVLSNKS 336
TP +K +VL N+
Sbjct: 276 TPEHVKLFRKVLGNRK 291
>pdb|1Q85|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+ Complex, Se-Met)
pdb|1Q85|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+ Complex, Se-Met)
pdb|1Q8A|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+:l-Hcy Complex, Se-Met)
pdb|1Q8A|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+:l-Hcy Complex, Se-Met)
Length = 566
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 77/316 (24%), Positives = 134/316 (42%), Gaps = 44/316 (13%)
Query: 24 VVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQG 83
++DG + TE ++G D + + +P +V KVH Y+++G+++I+T ++ AT
Sbjct: 17 LLDGAYGTEFXKYGYDD----LPEELNIKAPDVVLKVHRSYIESGSDVILTNTFGATRXK 72
Query: 84 FEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSY 143
G ++ + ++R +V IA R ++ LV +G
Sbjct: 73 LRKHGLE-DKLDPIVRNAVRIA----------------------RRAAGEKLVFGDIGPT 109
Query: 144 GAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNXXXXXXXXXXX 203
G E G + E E R V I G D I FET +
Sbjct: 110 G-------ELPYPLGSTL-FEEFYENFRETVEIXVEEGVDGIIFETFSDILELKAAVLAA 161
Query: 204 XXXG--ITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT-SPRFIHGLI 260
+ + A +F+ K ++G A D + + A+GINC+ P I +
Sbjct: 162 REVSRDVFLIAHXTFDEKG--RSLTGTDPANFAITFDELD-IDALGINCSLGPEEILPIF 218
Query: 261 LSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRT 320
+ + T K +++ PN+G+ E K V ++ DF +I + + G ++FGGCC T
Sbjct: 219 QELSQYTDKFLVVEPNAGKPI-VENGKTVYP--LKPHDFAVHIDSYYELGVNIFGGCCGT 275
Query: 321 TPNTIKAISRVLSNKS 336
TP +K +VL N+
Sbjct: 276 TPEHVKLFRKVLGNRK 291
>pdb|1UMY|A Chain A, Bhmt From Rat Liver
pdb|1UMY|B Chain B, Bhmt From Rat Liver
pdb|1UMY|C Chain C, Bhmt From Rat Liver
pdb|1UMY|D Chain D, Bhmt From Rat Liver
Length = 407
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 136/335 (40%), Gaps = 54/335 (16%)
Query: 26 DGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFE 85
DGGF LE+ G P W+ + V P VR++H ++L AG+N++ T ++ A+ E
Sbjct: 26 DGGFVFALEKRGYVKAGP-WTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLE 84
Query: 86 AKGFSTEEAEALLRRSV-EIACE-AREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSY 143
+G AE + + V E AC+ AR++ D D LVA V
Sbjct: 85 NRGNYV--AEKISGQKVNEAACDIARQV------ADEGD-----------ALVAGGVSQT 125
Query: 144 GAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNXXXXXXXXXXX 203
+YL+ SE E K FH +++ + D + E +
Sbjct: 126 PSYLSCKSE----------TEVKKIFH-QQLEVFMKKNVDFLIAEYFEHVEEAVWAVEAL 174
Query: 204 XXXGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC-----TSPRFI-- 256
G I A + ++ VS ECA + VG+NC TS + I
Sbjct: 175 KTSGKPIAATMCIGPEGDLHGVSPG---ECAVRLVKAGAAI-VGVNCHFDPSTSLQTIKL 230
Query: 257 --HGLILSVRK--VTSKPVIIY-PNSGETYNAELKKW---VESTGVRDEDFVSYIGKWRD 308
GL + K + S+P+ + P+ G+ +L ++ +E D Y + +
Sbjct: 231 MKEGLEAARLKAYLMSQPLAYHTPDCGKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYN 290
Query: 309 AGASLFGGCCRTTPNTIKAISRVLSNKS--LPSAN 341
G GGCC P I+AI+ L+ + LP A+
Sbjct: 291 LGVRYIGGCCGFEPYHIRAIAEELAPERGFLPPAS 325
>pdb|1LT7|A Chain A, Oxidized Homo Sapiens Betaine-Homocysteine
S-Methyltransferase In Complex With Four Sm(Iii) Ions
pdb|1LT7|B Chain B, Oxidized Homo Sapiens Betaine-Homocysteine
S-Methyltransferase In Complex With Four Sm(Iii) Ions
pdb|1LT8|A Chain A, Reduced Homo Sapiens Betaine-Homocysteine S-
Methyltransferase In Complex With
S-(Delta-Carboxybutyl)-L- Homocysteine
pdb|1LT8|B Chain B, Reduced Homo Sapiens Betaine-Homocysteine S-
Methyltransferase In Complex With
S-(Delta-Carboxybutyl)-L- Homocysteine
Length = 406
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 77/341 (22%), Positives = 133/341 (39%), Gaps = 52/341 (15%)
Query: 19 CGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQ 78
G + DGGF LE+ G P W+ + V P VR++H ++L AG+N++ T ++
Sbjct: 19 AGEIVIGDGGFVFALEKRGYVKAGP-WTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFY 77
Query: 79 ATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAA 138
A+ E +G E + E+ A +I R + D D LVA
Sbjct: 78 ASEDKLENRGNYVLEKIS----GQEVNEAAADI--ARQVADEGD-----------ALVAG 120
Query: 139 SVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNXXXXXX 198
V +YL+ SE V L+ L+ F ++ V D + E +
Sbjct: 121 GVSQTPSYLSAKSETE---VKKVFLQQLEVFMKKNV--------DFLIAEYFEHVEEAVW 169
Query: 199 XXXXXXXXGITIPAWFSFNSKDGIN-VVSGDSILECASIADSCEQVVAVGINC------- 250
G + A + + ++ V G++ + S +G+NC
Sbjct: 170 AVETLIASGKPVAATMAIGPEGDLHGVPPGEAAVRLVKAGASI-----IGVNCHFDPTIS 224
Query: 251 --TSPRFIHGLILSVRK--VTSKPVIIY-PNSGETYNAELKKW---VESTGVRDEDFVSY 302
T GL + K + S+P+ + P++ + +L ++ +E D Y
Sbjct: 225 LKTVKLMKEGLEAAQLKAHLMSQPLAYHTPDANKQGFIDLPEFPFGLEPRVATRWDIQKY 284
Query: 303 IGKWRDAGASLFGGCCRTTPNTIKAISRVLSNKS--LPSAN 341
+ + G GGCC P I+AI+ L+ + LP A+
Sbjct: 285 AREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPPAS 325
>pdb|4FXQ|A Chain A, Full-Length Certhrax Toxin From Bacillus Cereus In Complex
With Inhibitor P6
pdb|4FXQ|B Chain B, Full-Length Certhrax Toxin From Bacillus Cereus In Complex
With Inhibitor P6
pdb|4GF1|A Chain A, Crystal Structure Of Certhrax
pdb|4GF1|B Chain B, Crystal Structure Of Certhrax
Length = 460
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 133 PVLVAASV--GSYGAYLADGSEYSGDY 157
P+L+ ++ G +GAY+AD SEY G Y
Sbjct: 387 PILLEITIPEGVHGAYIADMSEYPGQY 413
>pdb|3LDG|A Chain A, Crystal Structure Of Smu.472, A Putative Methyltransferase
Complexed With Sah
Length = 384
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 272 IIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRT 320
I+Y GET+ A LK W + D DF G+ D L+ G +
Sbjct: 322 ILYNEXGETF-APLKTWSQFILTNDTDFEQKFGRKADKKRKLYNGSLKV 369
>pdb|4FK7|A Chain A, Crystal Structure Of Certhrax Catalytic Domain
Length = 229
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 133 PVLVAASV--GSYGAYLADGSEYSGDY 157
P+L+ ++ G +GAY+AD SEY G Y
Sbjct: 164 PILLEITIPEGVHGAYIADMSEYPGQY 190
>pdb|2AU3|A Chain A, Crystal Structure Of The Aquifex Aeolicus Primase (Zinc
Binding And Rna Polymerase Domains)
Length = 407
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 14/73 (19%)
Query: 121 WDFTGSGRISSR---PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLIL 177
+D +GR + + P+L++A V Y YL +G Y D E +KEF + + L
Sbjct: 294 YDGDDAGRKAMKSAIPLLLSAGVEVYPVYLPEG--YDPD-------EFIKEFGKEELRRL 344
Query: 178 ANSGADLIAFETI 190
NS +L FET+
Sbjct: 345 INSSGEL--FETL 355
>pdb|2I5U|A Chain A, Crystal Structure Of Dnad Domain Protein From Enterococcus
Faecalis. Structural Genomics Target Apc85179
Length = 83
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 81 IQGFEAKGFSTEEAEALLRRSVEIACE--AREIYYDRCMKDSWDFTGSGRISSRP 133
I FE G S +EAE L+ +++EIA + AR Y + W+ G + R
Sbjct: 28 ISDFEKIGASQKEAEQLIVKAIEIAIDANARNYNYINAILKDWEQRGFKSVEERE 82
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 25 VDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYL 65
++ GFA+ +E GAD +P W+ K L+ + R + +D L
Sbjct: 343 LNEGFASYVEYLGADHAEPTWNLKDLIVPGDVYRVMAVDAL 383
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 25 VDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYL 65
++ GFA+ +E GAD +P W+ K L+ + R + +D L
Sbjct: 342 LNEGFASYVEYLGADHAEPTWNLKDLIVPGDVYRVMAVDAL 382
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 25 VDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYL 65
++ GFA+ +E GAD +P W+ K L+ + R + +D L
Sbjct: 342 LNEGFASYVEYLGADHAEPTWNLKDLIVPGDVYRVMAVDAL 382
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 25 VDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITAS 76
++ GFA+ +E GAD +P W+ K L+ + R + +D L + + AS
Sbjct: 345 LNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTPAS 396
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 25 VDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYL 65
++ GFA+ +E GAD +P W+ K L+ + R + +D L
Sbjct: 386 LNEGFASYVEYLGADHAEPTWNLKDLIVPGDVYRVMAVDAL 426
>pdb|1YAB|A Chain A, Structure Of T. Maritima Flin Flagellar Rotor Protein
pdb|1YAB|B Chain B, Structure Of T. Maritima Flin Flagellar Rotor Protein
Length = 87
Score = 27.7 bits (60), Expect = 9.4, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 256 IHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVS 301
IHG I+ + K+T +PV I N E+ E+ GVR + VS
Sbjct: 32 IHGSIIELDKLTGEPVDILVNGKLIARGEVVVIDENFGVRITEIVS 77
>pdb|1O6A|A Chain A, Crystal Structure Of A C-Terminal Fragment Of The Putative
Flagellar Motor Switch Protein Flin (Tm0680) From
Thermotoga Maritima At 1.85 A Resolution
pdb|1O6A|B Chain B, Crystal Structure Of A C-Terminal Fragment Of The Putative
Flagellar Motor Switch Protein Flin (Tm0680) From
Thermotoga Maritima At 1.85 A Resolution
Length = 96
Score = 27.7 bits (60), Expect = 9.4, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 256 IHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVS 301
IHG I+ + K+T +PV I N E+ E+ GVR + VS
Sbjct: 41 IHGSIIELDKLTGEPVDILVNGKLIARGEVVVIDENFGVRITEIVS 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,165,796
Number of Sequences: 62578
Number of extensions: 415052
Number of successful extensions: 932
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 913
Number of HSP's gapped (non-prelim): 21
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)