Query 019107
Match_columns 346
No_of_seqs 109 out of 1059
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 06:44:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019107.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019107hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02489 homocysteine S-methyl 100.0 7.6E-82 1.7E-86 608.9 39.9 326 9-335 9-334 (335)
2 PRK09485 mmuM homocysteine met 100.0 1.3E-78 2.9E-83 580.4 37.8 301 11-333 3-303 (304)
3 KOG1579 Homocysteine S-methylt 100.0 1.1E-77 2.3E-82 559.0 33.0 311 7-336 4-316 (317)
4 COG2040 MHT1 Homocysteine/sele 100.0 5E-77 1.1E-81 547.0 30.1 296 14-335 3-299 (300)
5 PRK07534 methionine synthase I 100.0 2.2E-71 4.7E-76 535.7 37.2 295 10-342 3-303 (336)
6 PF02574 S-methyl_trans: Homoc 100.0 1.4E-74 3.1E-79 553.4 9.8 291 22-334 1-305 (305)
7 COG0646 MetH Methionine syntha 100.0 9E-68 1.9E-72 488.0 31.4 296 10-334 6-311 (311)
8 PRK08645 bifunctional homocyst 100.0 1.4E-66 3E-71 538.8 35.4 286 12-337 4-290 (612)
9 PRK09490 metH B12-dependent me 100.0 1.8E-66 3.8E-71 561.5 36.8 304 11-339 10-335 (1229)
10 TIGR02082 metH 5-methyltetrahy 100.0 1.1E-64 2.4E-69 549.1 36.1 296 20-339 3-319 (1178)
11 COG0646 MetH Methionine syntha 97.0 0.048 1E-06 51.8 16.2 156 162-334 51-244 (311)
12 cd00945 Aldolase_Class_I Class 95.7 1.2 2.5E-05 39.0 16.8 137 170-333 15-170 (201)
13 TIGR00222 panB 3-methyl-2-oxob 95.7 0.45 9.7E-06 44.9 14.6 112 133-272 76-199 (263)
14 PRK03620 5-dehydro-4-deoxygluc 95.5 1.2 2.7E-05 42.7 17.2 104 161-278 25-142 (303)
15 PRK00311 panB 3-methyl-2-oxobu 95.0 0.83 1.8E-05 43.1 14.0 99 162-272 91-200 (264)
16 TIGR02082 metH 5-methyltetrahy 94.9 1.3 2.7E-05 50.3 17.6 157 162-335 48-251 (1178)
17 cd06557 KPHMT-like Ketopantoat 94.9 1.1 2.3E-05 42.2 14.6 113 134-272 74-197 (254)
18 cd02810 DHOD_DHPD_FMN Dihydroo 94.8 0.39 8.5E-06 45.4 11.7 85 209-315 98-194 (289)
19 TIGR01037 pyrD_sub1_fam dihydr 94.7 0.7 1.5E-05 44.1 13.1 83 209-314 90-186 (300)
20 cd02801 DUS_like_FMN Dihydrour 94.6 0.6 1.3E-05 42.4 12.0 90 181-278 23-133 (231)
21 PRK13384 delta-aminolevulinic 94.5 4.8 0.0001 38.8 18.6 225 54-314 60-311 (322)
22 cd00408 DHDPS-like Dihydrodipi 94.5 4.3 9.3E-05 38.2 18.0 104 161-277 15-132 (281)
23 TIGR00683 nanA N-acetylneurami 94.4 1.5 3.2E-05 41.9 14.6 104 161-277 18-137 (290)
24 PF00490 ALAD: Delta-aminolevu 94.3 3.9 8.4E-05 39.5 17.0 228 54-314 56-312 (324)
25 COG0329 DapA Dihydrodipicolina 94.3 1.4 3.1E-05 42.3 14.2 104 161-277 22-139 (299)
26 cd00377 ICL_PEPM Members of th 94.2 2.2 4.7E-05 39.7 14.8 101 172-278 88-206 (243)
27 TIGR03249 KdgD 5-dehydro-4-deo 94.1 5.3 0.00012 38.1 17.9 104 161-278 23-140 (296)
28 PF03437 BtpA: BtpA family; I 94.1 5.3 0.00011 37.5 18.2 37 155-193 18-54 (254)
29 TIGR00737 nifR3_yhdG putative 94.0 0.56 1.2E-05 45.3 10.8 93 179-278 29-141 (319)
30 cd02940 DHPD_FMN Dihydropyrimi 93.8 0.92 2E-05 43.4 11.8 61 209-275 99-175 (299)
31 PLN02424 ketopantoate hydroxym 93.8 3 6.5E-05 40.6 15.1 115 133-272 96-221 (332)
32 PRK10415 tRNA-dihydrouridine s 93.6 1.6 3.6E-05 42.2 13.3 93 179-278 31-143 (321)
33 cd07937 DRE_TIM_PC_TC_5S Pyruv 93.6 3.6 7.7E-05 39.0 15.3 99 173-275 96-199 (275)
34 PRK05286 dihydroorotate dehydr 93.5 2.2 4.7E-05 41.8 14.2 99 197-312 125-240 (344)
35 PRK09490 metH B12-dependent me 93.4 3 6.5E-05 47.5 16.6 157 162-335 63-267 (1229)
36 cd04740 DHOD_1B_like Dihydroor 93.3 6.9 0.00015 37.1 16.9 136 169-333 103-278 (296)
37 cd04740 DHOD_1B_like Dihydroor 93.1 5.5 0.00012 37.8 16.0 81 209-313 89-182 (296)
38 PF00701 DHDPS: Dihydrodipicol 92.9 2 4.3E-05 40.7 12.6 104 161-277 19-136 (289)
39 cd04738 DHOD_2_like Dihydrooro 92.9 2.7 5.8E-05 40.8 13.6 87 209-312 128-231 (327)
40 PRK07259 dihydroorotate dehydr 92.9 1.6 3.4E-05 41.7 11.9 81 209-313 91-185 (301)
41 TIGR03217 4OH_2_O_val_ald 4-hy 92.8 10 0.00022 37.0 18.4 165 146-342 9-191 (333)
42 cd00377 ICL_PEPM Members of th 92.7 2.2 4.8E-05 39.7 12.3 47 162-217 158-204 (243)
43 TIGR02317 prpB methylisocitrat 92.7 2.9 6.3E-05 39.9 13.2 42 172-218 165-206 (285)
44 COG0113 HemB Delta-aminolevuli 92.4 11 0.00023 36.3 16.3 226 55-314 61-315 (330)
45 PRK09485 mmuM homocysteine met 92.4 11 0.00023 36.2 18.6 154 162-334 44-237 (304)
46 cd00951 KDGDH 5-dehydro-4-deox 92.2 2.7 5.8E-05 40.0 12.5 104 161-278 18-135 (289)
47 cd00954 NAL N-Acetylneuraminic 92.2 6.1 0.00013 37.5 14.9 104 161-277 18-137 (288)
48 PRK07534 methionine synthase I 92.1 12 0.00027 36.5 17.1 158 162-333 43-228 (336)
49 cd00384 ALAD_PBGS Porphobilino 92.0 12 0.00026 36.0 17.4 223 54-314 50-302 (314)
50 cd00950 DHDPS Dihydrodipicolin 92.0 2.5 5.4E-05 39.9 11.9 104 161-277 18-135 (284)
51 cd00952 CHBPH_aldolase Trans-o 91.9 3.4 7.4E-05 39.8 12.8 104 161-277 26-144 (309)
52 PRK09283 delta-aminolevulinic 91.9 13 0.00028 36.0 18.4 224 54-314 58-310 (323)
53 TIGR02313 HpaI-NOT-DapA 2,4-di 91.8 3.2 6.9E-05 39.6 12.5 103 161-276 18-135 (294)
54 PRK14042 pyruvate carboxylase 91.7 5.7 0.00012 41.9 15.1 98 174-275 102-204 (596)
55 PRK11320 prpB 2-methylisocitra 91.7 2.8 6.1E-05 40.2 11.8 42 172-218 170-211 (292)
56 cd07943 DRE_TIM_HOA 4-hydroxy- 91.3 5.9 0.00013 37.1 13.5 96 174-275 91-192 (263)
57 cd04823 ALAD_PBGS_aspartate_ri 91.3 15 0.00032 35.6 17.2 226 54-315 53-308 (320)
58 PRK04147 N-acetylneuraminate l 91.1 3.6 7.8E-05 39.2 12.0 103 161-276 21-138 (293)
59 PRK07565 dihydroorotate dehydr 90.9 2.6 5.7E-05 41.0 11.1 75 193-275 86-172 (334)
60 cd03174 DRE_TIM_metallolyase D 90.9 13 0.00028 34.2 15.4 148 161-337 16-189 (265)
61 cd04824 eu_ALAD_PBGS_cysteine_ 90.9 16 0.00035 35.3 17.0 226 54-314 50-308 (320)
62 PF02548 Pantoate_transf: Keto 90.8 12 0.00025 35.4 14.7 114 133-272 77-201 (261)
63 PRK07259 dihydroorotate dehydr 90.8 15 0.00033 34.9 19.3 73 170-251 106-192 (301)
64 PRK08645 bifunctional homocyst 90.7 15 0.00033 38.8 17.3 157 162-334 41-221 (612)
65 cd00958 DhnA Class I fructose- 90.5 9.2 0.0002 34.9 13.8 119 173-312 81-209 (235)
66 TIGR00742 yjbN tRNA dihydrouri 90.3 7.5 0.00016 37.7 13.5 124 169-314 15-158 (318)
67 PRK10550 tRNA-dihydrouridine s 89.7 5.5 0.00012 38.5 12.1 101 169-278 15-143 (312)
68 PRK06852 aldolase; Validated 89.6 7.2 0.00016 37.6 12.6 100 173-280 64-181 (304)
69 PRK05692 hydroxymethylglutaryl 89.6 18 0.0004 34.4 15.4 136 65-246 89-228 (287)
70 cd02911 arch_FMN Archeal FMN-b 89.3 17 0.00036 33.6 14.5 70 198-278 63-149 (233)
71 TIGR00612 ispG_gcpE 1-hydroxy- 89.3 14 0.0003 36.1 14.1 119 170-307 36-157 (346)
72 TIGR00674 dapA dihydrodipicoli 89.2 4 8.6E-05 38.7 10.6 103 161-276 16-132 (285)
73 PRK15063 isocitrate lyase; Pro 89.0 6.7 0.00015 39.5 12.2 33 172-205 269-302 (428)
74 TIGR02319 CPEP_Pphonmut carbox 88.9 7.5 0.00016 37.3 12.1 42 172-218 169-210 (294)
75 cd04741 DHOD_1A_like Dihydroor 88.9 3.6 7.8E-05 39.3 10.1 60 209-275 91-164 (294)
76 PRK13523 NADPH dehydrogenase N 88.8 22 0.00048 34.7 15.7 136 164-315 37-245 (337)
77 PRK05437 isopentenyl pyrophosp 88.6 21 0.00045 35.1 15.4 139 166-328 75-230 (352)
78 COG5309 Exo-beta-1,3-glucanase 88.6 5.3 0.00011 37.8 10.4 44 148-194 243-286 (305)
79 cd06556 ICL_KPHMT Members of t 88.5 5.6 0.00012 37.0 10.8 73 134-216 126-198 (240)
80 PLN02489 homocysteine S-methyl 88.5 26 0.00056 34.2 18.9 157 162-335 53-265 (335)
81 PRK12581 oxaloacetate decarbox 88.4 16 0.00035 37.4 14.8 98 174-275 111-213 (468)
82 PRK14040 oxaloacetate decarbox 87.9 27 0.00058 36.9 16.5 97 173-275 102-205 (593)
83 PRK08195 4-hyroxy-2-oxovalerat 87.9 28 0.00062 34.0 18.7 165 146-342 10-192 (337)
84 cd08210 RLP_RrRLP Ribulose bis 87.8 22 0.00047 35.2 14.9 112 133-277 126-252 (364)
85 PRK02412 aroD 3-dehydroquinate 87.7 10 0.00022 35.5 12.0 99 173-276 100-205 (253)
86 TIGR02320 PEP_mutase phosphoen 87.6 14 0.0003 35.3 13.0 43 172-214 173-216 (285)
87 PRK05286 dihydroorotate dehydr 87.5 23 0.0005 34.6 14.9 74 169-249 158-245 (344)
88 PRK00366 ispG 4-hydroxy-3-meth 87.4 24 0.00051 34.7 14.5 118 170-306 44-165 (360)
89 PLN02417 dihydrodipicolinate s 87.3 4.5 9.8E-05 38.3 9.6 101 161-276 19-133 (280)
90 cd02940 DHPD_FMN Dihydropyrimi 87.1 19 0.00042 34.3 13.9 73 170-251 115-203 (299)
91 cd04732 HisA HisA. Phosphorib 87.1 7.6 0.00017 35.2 10.7 97 174-273 88-195 (234)
92 PRK03170 dihydrodipicolinate s 87.1 5.7 0.00012 37.7 10.2 103 161-276 19-135 (292)
93 cd00953 KDG_aldolase KDG (2-ke 86.9 28 0.0006 32.9 16.2 99 161-276 17-129 (279)
94 PRK06552 keto-hydroxyglutarate 86.9 18 0.00038 33.1 12.8 100 173-317 80-183 (213)
95 COG0821 gcpE 1-hydroxy-2-methy 86.5 4.5 9.8E-05 39.3 8.9 80 170-252 38-134 (361)
96 PRK13397 3-deoxy-7-phosphohept 86.4 12 0.00026 35.0 11.7 158 50-275 24-191 (250)
97 PRK15452 putative protease; Pr 86.4 18 0.00039 36.8 13.8 73 172-251 14-98 (443)
98 cd02932 OYE_YqiM_FMN Old yello 86.2 22 0.00047 34.5 14.0 47 164-216 33-97 (336)
99 PF01729 QRPTase_C: Quinolinat 86.2 3.6 7.9E-05 36.2 7.7 64 174-250 93-156 (169)
100 TIGR02151 IPP_isom_2 isopenten 86.1 13 0.00027 36.3 12.2 137 166-325 68-220 (333)
101 cd06556 ICL_KPHMT Members of t 86.1 27 0.00059 32.5 13.8 93 173-274 94-197 (240)
102 PRK01130 N-acetylmannosamine-6 86.0 4.9 0.00011 36.4 8.8 88 172-273 79-178 (221)
103 PRK05458 guanosine 5'-monophos 86.0 11 0.00023 36.8 11.5 89 172-273 100-206 (326)
104 COG1038 PycA Pyruvate carboxyl 85.7 14 0.0003 40.2 12.7 94 177-274 639-743 (1149)
105 PRK12677 xylose isomerase; Pro 85.7 40 0.00087 33.6 15.9 87 161-250 146-245 (384)
106 PRK12581 oxaloacetate decarbox 85.7 20 0.00042 36.8 13.6 64 167-237 162-228 (468)
107 TIGR01235 pyruv_carbox pyruvat 85.1 33 0.00071 39.2 16.2 99 174-275 631-739 (1143)
108 PRK12858 tagatose 1,6-diphosph 85.1 18 0.0004 35.4 12.7 125 177-319 115-276 (340)
109 PRK08673 3-deoxy-7-phosphohept 84.9 24 0.00052 34.5 13.3 158 50-277 102-271 (335)
110 PRK02506 dihydroorotate dehydr 84.8 13 0.00027 35.9 11.4 60 209-274 92-163 (310)
111 PLN02746 hydroxymethylglutaryl 84.7 43 0.00093 33.0 15.4 68 161-239 194-265 (347)
112 cd04747 OYE_like_5_FMN Old yel 84.6 44 0.00095 33.0 17.2 74 241-319 156-257 (361)
113 TIGR02127 pyrF_sub2 orotidine 84.5 20 0.00044 33.7 12.3 157 162-332 35-208 (261)
114 PRK12331 oxaloacetate decarbox 84.3 43 0.00093 34.1 15.3 98 174-275 102-204 (448)
115 PRK13587 1-(5-phosphoribosyl)- 84.2 13 0.00029 34.2 10.8 97 174-274 91-198 (234)
116 TIGR00007 phosphoribosylformim 84.1 16 0.00034 33.2 11.3 97 174-273 87-194 (230)
117 cd04722 TIM_phosphate_binding 83.9 9.8 0.00021 32.5 9.5 103 168-277 12-123 (200)
118 cd04739 DHOD_like Dihydroorota 83.9 19 0.0004 35.0 12.2 60 209-275 99-170 (325)
119 PF01487 DHquinase_I: Type I 3 83.7 11 0.00023 34.3 9.9 104 168-277 75-183 (224)
120 COG0826 Collagenase and relate 83.5 11 0.00024 37.0 10.5 140 52-251 14-174 (347)
121 PRK15063 isocitrate lyase; Pro 83.1 55 0.0012 33.1 15.8 130 173-314 166-343 (428)
122 cd00945 Aldolase_Class_I Class 83.0 30 0.00064 29.9 16.4 24 53-76 11-34 (201)
123 COG5016 Pyruvate/oxaloacetate 82.9 19 0.00041 36.1 11.6 106 164-276 97-207 (472)
124 KOG2335 tRNA-dihydrouridine sy 82.8 5.5 0.00012 39.0 7.8 102 209-333 73-199 (358)
125 PRK09250 fructose-bisphosphate 82.6 22 0.00048 34.9 11.9 133 173-324 96-244 (348)
126 cd00465 URO-D_CIMS_like The UR 82.6 44 0.00095 31.5 17.5 144 164-333 140-305 (306)
127 PF00682 HMGL-like: HMGL-like 82.6 32 0.00069 31.3 12.7 96 174-275 73-188 (237)
128 TIGR00736 nifR3_rel_arch TIM-b 82.4 41 0.0009 31.1 13.7 57 209-277 67-143 (231)
129 cd04729 NanE N-acetylmannosami 82.0 14 0.00029 33.5 9.9 89 171-273 82-182 (219)
130 TIGR01108 oadA oxaloacetate de 82.0 55 0.0012 34.6 15.5 98 174-275 97-199 (582)
131 PRK12331 oxaloacetate decarbox 81.7 56 0.0012 33.3 15.1 51 168-221 154-207 (448)
132 TIGR01108 oadA oxaloacetate de 81.7 71 0.0015 33.7 16.2 64 168-238 149-215 (582)
133 PRK05581 ribulose-phosphate 3- 81.4 39 0.00085 30.2 13.2 49 170-219 18-71 (220)
134 PRK08385 nicotinate-nucleotide 81.0 15 0.00032 35.1 9.9 67 173-250 194-260 (278)
135 PRK12330 oxaloacetate decarbox 80.8 60 0.0013 33.6 14.9 98 174-275 103-207 (499)
136 PRK00748 1-(5-phosphoribosyl)- 80.8 20 0.00043 32.5 10.6 96 174-273 89-195 (233)
137 PRK09282 pyruvate carboxylase 80.3 58 0.0013 34.4 15.1 95 174-275 102-204 (592)
138 PLN02617 imidazole glycerol ph 80.0 28 0.00061 36.3 12.4 105 172-278 338-492 (538)
139 TIGR02635 RhaI_grampos L-rhamn 79.9 17 0.00036 36.2 10.3 175 52-266 69-269 (378)
140 TIGR01306 GMP_reduct_2 guanosi 79.9 62 0.0013 31.5 14.5 98 170-278 47-146 (321)
141 cd07947 DRE_TIM_Re_CS Clostrid 79.8 57 0.0012 31.0 14.6 70 165-239 146-227 (279)
142 cd04738 DHOD_2_like Dihydrooro 79.7 61 0.0013 31.3 15.7 81 164-251 144-239 (327)
143 COG2513 PrpB PEP phosphonomuta 79.6 2.7 5.9E-05 40.0 4.5 68 172-252 170-237 (289)
144 PLN02925 4-hydroxy-3-methylbut 79.5 11 0.00023 40.3 9.1 50 170-220 112-164 (733)
145 cd08205 RuBisCO_IV_RLP Ribulos 79.5 29 0.00064 34.3 11.9 101 161-277 143-256 (367)
146 cd00502 DHQase_I Type I 3-dehy 79.5 28 0.00061 31.6 11.1 98 172-276 80-182 (225)
147 PRK07565 dihydroorotate dehydr 79.4 63 0.0014 31.3 20.4 71 171-250 117-199 (334)
148 PRK13398 3-deoxy-7-phosphohept 79.3 52 0.0011 31.1 13.1 29 50-78 36-64 (266)
149 PF13714 PEP_mutase: Phosphoen 79.3 40 0.00086 31.3 12.1 115 54-216 84-198 (238)
150 PRK13111 trpA tryptophan synth 79.2 57 0.0012 30.6 17.4 156 172-334 30-224 (258)
151 PRK12999 pyruvate carboxylase; 78.8 79 0.0017 36.2 16.4 99 174-275 633-741 (1146)
152 PRK14041 oxaloacetate decarbox 78.8 38 0.00081 34.8 12.7 64 167-237 152-218 (467)
153 PLN02274 inosine-5'-monophosph 78.6 44 0.00095 34.6 13.3 65 171-248 250-316 (505)
154 PRK09282 pyruvate carboxylase 78.4 73 0.0016 33.7 15.1 64 168-238 154-220 (592)
155 TIGR01093 aroD 3-dehydroquinat 78.4 40 0.00087 30.8 11.8 94 178-276 89-187 (228)
156 PF02574 S-methyl_trans: Homoc 78.4 34 0.00073 32.6 11.8 160 162-334 39-237 (305)
157 PRK02048 4-hydroxy-3-methylbut 78.1 15 0.00033 38.5 9.7 50 170-220 43-95 (611)
158 cd07944 DRE_TIM_HOA_like 4-hyd 78.0 61 0.0013 30.4 17.0 161 146-337 5-181 (266)
159 PF01208 URO-D: Uroporphyrinog 77.8 51 0.0011 31.7 13.0 140 167-334 181-342 (343)
160 PRK14041 oxaloacetate decarbox 77.8 59 0.0013 33.3 13.8 98 174-275 101-203 (467)
161 PRK09140 2-dehydro-3-deoxy-6-p 77.1 57 0.0012 29.5 13.2 115 173-332 75-199 (206)
162 PRK11815 tRNA-dihydrouridine s 76.8 35 0.00076 33.2 11.5 115 182-314 36-168 (333)
163 TIGR02660 nifV_homocitr homoci 76.8 80 0.0017 31.1 14.3 97 174-276 78-193 (365)
164 TIGR03128 RuMP_HxlA 3-hexulose 76.8 53 0.0012 29.1 14.0 66 173-249 68-133 (206)
165 cd00452 KDPG_aldolase KDPG and 76.7 53 0.0011 29.0 13.1 111 173-325 68-179 (190)
166 cd07938 DRE_TIM_HMGL 3-hydroxy 76.7 68 0.0015 30.3 15.5 65 169-239 150-217 (274)
167 cd00381 IMPDH IMPDH: The catal 76.6 76 0.0017 30.8 15.4 66 171-248 96-162 (325)
168 PF01207 Dus: Dihydrouridine s 76.4 12 0.00026 36.1 8.0 115 179-314 19-155 (309)
169 PRK05567 inosine 5'-monophosph 76.3 72 0.0016 32.7 14.1 66 171-248 230-296 (486)
170 COG0159 TrpA Tryptophan syntha 76.3 71 0.0015 30.2 17.4 87 175-273 116-210 (265)
171 PF00682 HMGL-like: HMGL-like 76.3 60 0.0013 29.4 16.9 144 52-246 64-210 (237)
172 PRK07896 nicotinate-nucleotide 76.2 21 0.00045 34.2 9.4 62 176-250 214-275 (289)
173 PRK12999 pyruvate carboxylase; 76.1 54 0.0012 37.5 14.1 86 135-238 669-757 (1146)
174 PF00701 DHDPS: Dihydrodipicol 76.1 70 0.0015 30.1 17.0 152 53-261 20-175 (289)
175 TIGR02990 ectoine_eutA ectoine 76.0 18 0.00039 33.6 8.8 96 174-272 112-210 (239)
176 TIGR01036 pyrD_sub2 dihydrooro 75.8 82 0.0018 30.7 14.2 74 199-274 124-216 (335)
177 PF01180 DHO_dh: Dihydroorotat 75.7 21 0.00045 33.9 9.5 49 168-218 112-171 (295)
178 TIGR00262 trpA tryptophan synt 75.6 71 0.0015 29.9 18.3 90 173-273 107-203 (256)
179 PRK13585 1-(5-phosphoribosyl)- 75.5 34 0.00074 31.2 10.5 97 174-273 91-198 (241)
180 cd02803 OYE_like_FMN_family Ol 75.5 31 0.00068 33.0 10.7 28 55-82 33-60 (327)
181 PRK08318 dihydropyrimidine deh 75.1 24 0.00052 35.3 10.2 61 209-275 99-175 (420)
182 PRK14040 oxaloacetate decarbox 74.8 82 0.0018 33.3 14.3 65 167-238 154-221 (593)
183 cd07939 DRE_TIM_NifV Streptomy 74.5 74 0.0016 29.6 15.5 64 169-239 140-206 (259)
184 PLN02591 tryptophan synthase 74.1 78 0.0017 29.6 17.8 89 174-273 99-194 (250)
185 PRK12344 putative alpha-isopro 74.0 84 0.0018 32.7 14.0 52 168-222 158-212 (524)
186 PRK08318 dihydropyrimidine deh 73.9 1E+02 0.0022 30.9 15.6 70 173-251 118-203 (420)
187 smart00633 Glyco_10 Glycosyl h 73.7 39 0.00085 31.3 10.6 51 168-220 136-194 (254)
188 TIGR01036 pyrD_sub2 dihydrooro 73.5 94 0.002 30.3 15.7 77 168-251 154-247 (335)
189 PRK06096 molybdenum transport 73.4 23 0.0005 33.8 9.0 65 173-250 201-265 (284)
190 PRK06843 inosine 5-monophospha 73.4 51 0.0011 33.2 11.7 66 171-248 155-221 (404)
191 TIGR01919 hisA-trpF 1-(5-phosp 73.4 48 0.001 30.7 11.0 97 173-273 88-198 (243)
192 cd07944 DRE_TIM_HOA_like 4-hyd 73.2 82 0.0018 29.5 14.9 96 174-275 88-190 (266)
193 PRK05848 nicotinate-nucleotide 73.2 26 0.00057 33.2 9.3 64 174-250 195-258 (273)
194 TIGR02660 nifV_homocitr homoci 73.0 1E+02 0.0022 30.4 14.7 62 169-237 143-207 (365)
195 TIGR02320 PEP_mutase phosphoen 72.8 90 0.0019 29.8 13.2 101 172-275 96-218 (285)
196 TIGR01235 pyruv_carbox pyruvat 72.8 64 0.0014 36.9 13.6 65 167-238 688-755 (1143)
197 PRK14042 pyruvate carboxylase 72.7 1.3E+02 0.0029 31.8 15.1 64 168-238 154-220 (596)
198 TIGR00735 hisF imidazoleglycer 72.5 64 0.0014 29.9 11.7 94 177-273 92-204 (254)
199 PLN02591 tryptophan synthase 72.5 85 0.0018 29.4 15.2 158 170-334 18-214 (250)
200 cd02803 OYE_like_FMN_family Ol 72.4 71 0.0015 30.5 12.4 111 160-273 130-286 (327)
201 COG0167 PyrD Dihydroorotate de 72.3 76 0.0017 30.7 12.3 162 37-251 8-196 (310)
202 cd02810 DHOD_DHPD_FMN Dihydroo 72.1 87 0.0019 29.3 13.4 72 171-249 114-196 (289)
203 TIGR01302 IMP_dehydrog inosine 71.8 1.1E+02 0.0024 31.1 14.0 27 53-80 222-248 (450)
204 PRK12330 oxaloacetate decarbox 71.8 98 0.0021 32.0 13.6 65 168-238 155-223 (499)
205 COG0159 TrpA Tryptophan syntha 71.8 92 0.002 29.5 14.7 158 171-335 34-230 (265)
206 cd03174 DRE_TIM_metallolyase D 71.4 83 0.0018 28.8 14.5 99 173-275 79-197 (265)
207 PRK13125 trpA tryptophan synth 71.3 86 0.0019 28.9 12.7 90 173-272 93-189 (244)
208 cd02931 ER_like_FMN Enoate red 71.2 1.1E+02 0.0024 30.3 14.9 143 164-314 35-269 (382)
209 TIGR01463 mtaA_cmuA methyltran 70.7 1E+02 0.0022 29.6 14.4 82 174-264 248-336 (340)
210 PLN02495 oxidoreductase, actin 70.7 41 0.00089 33.6 10.4 60 209-274 113-188 (385)
211 COG5016 Pyruvate/oxaloacetate 70.6 1.2E+02 0.0027 30.5 13.3 75 167-250 155-232 (472)
212 PRK13396 3-deoxy-7-phosphohept 70.5 86 0.0019 31.0 12.4 159 50-276 110-279 (352)
213 PF00248 Aldo_ket_red: Aldo/ke 70.3 91 0.002 28.8 13.8 223 51-332 13-266 (283)
214 TIGR00259 thylakoid_BtpA membr 70.2 70 0.0015 30.1 11.2 32 161-192 21-52 (257)
215 COG0106 HisA Phosphoribosylfor 70.0 57 0.0012 30.4 10.4 95 173-273 89-196 (241)
216 TIGR01949 AroFGH_arch predicte 70.0 94 0.002 28.9 14.6 124 173-319 95-227 (258)
217 PF00977 His_biosynth: Histidi 69.9 13 0.00029 34.0 6.4 95 174-273 88-196 (229)
218 PLN02520 bifunctional 3-dehydr 69.6 56 0.0012 34.0 11.6 96 173-275 102-199 (529)
219 cd02930 DCR_FMN 2,4-dienoyl-Co 69.5 1.2E+02 0.0025 29.7 18.0 112 160-273 126-281 (353)
220 TIGR03572 WbuZ glycosyl amidat 69.2 80 0.0017 28.6 11.4 94 177-273 92-202 (232)
221 PF07302 AroM: AroM protein; 69.2 15 0.00033 33.7 6.5 41 172-216 169-209 (221)
222 TIGR01463 mtaA_cmuA methyltran 69.1 1.1E+02 0.0024 29.4 17.7 41 295-335 294-338 (340)
223 PRK00865 glutamate racemase; P 69.1 1E+02 0.0022 28.8 14.1 53 156-213 43-95 (261)
224 PRK02261 methylaspartate mutas 69.0 69 0.0015 26.9 13.0 84 226-327 39-128 (137)
225 PF13714 PEP_mutase: Phosphoen 68.6 63 0.0014 30.0 10.6 122 192-333 53-191 (238)
226 PRK07428 nicotinate-nucleotide 68.6 33 0.00072 32.8 8.9 64 174-250 209-272 (288)
227 PF04551 GcpE: GcpE protein; 68.5 47 0.001 32.7 9.9 94 172-280 35-143 (359)
228 PRK02412 aroD 3-dehydroquinate 68.2 1E+02 0.0022 28.6 14.9 106 162-273 26-140 (253)
229 PRK13575 3-dehydroquinate dehy 68.1 1E+02 0.0022 28.6 11.9 91 180-275 96-193 (238)
230 PRK00748 1-(5-phosphoribosyl)- 67.9 93 0.002 28.0 12.5 75 176-263 38-120 (233)
231 PRK06106 nicotinate-nucleotide 67.6 34 0.00073 32.7 8.7 59 176-250 209-267 (281)
232 PLN02446 (5-phosphoribosyl)-5- 67.4 69 0.0015 30.3 10.6 101 172-274 95-213 (262)
233 PRK11858 aksA trans-homoaconit 67.4 1.3E+02 0.0029 29.7 14.9 51 169-222 146-199 (378)
234 PRK14024 phosphoribosyl isomer 67.1 61 0.0013 29.8 10.2 94 174-273 90-195 (241)
235 cd04739 DHOD_like Dihydroorota 66.7 29 0.00063 33.6 8.3 16 176-191 31-46 (325)
236 PRK06278 cobyrinic acid a,c-di 66.5 59 0.0013 33.4 10.8 95 177-276 313-418 (476)
237 COG0826 Collagenase and relate 66.4 71 0.0015 31.4 11.0 135 174-320 19-175 (347)
238 PRK05718 keto-hydroxyglutarate 66.2 1E+02 0.0023 28.0 12.2 103 172-316 78-182 (212)
239 cd07939 DRE_TIM_NifV Streptomy 66.1 1.1E+02 0.0024 28.3 14.4 96 174-275 75-189 (259)
240 PRK13111 trpA tryptophan synth 66.1 1.1E+02 0.0023 28.8 11.7 88 174-273 110-205 (258)
241 cd02811 IDI-2_FMN Isopentenyl- 66.0 65 0.0014 31.2 10.6 130 168-321 69-215 (326)
242 PRK01033 imidazole glycerol ph 65.9 81 0.0018 29.4 10.9 95 176-273 91-201 (258)
243 PRK11858 aksA trans-homoaconit 65.8 1.4E+02 0.0031 29.5 14.5 97 174-276 81-196 (378)
244 cd02072 Glm_B12_BD B12 binding 65.8 76 0.0016 26.6 9.5 81 228-326 37-123 (128)
245 cd00950 DHDPS Dihydrodipicolin 65.6 1.2E+02 0.0026 28.4 21.1 141 53-252 19-163 (284)
246 TIGR01417 PTS_I_fam phosphoeno 65.6 1.8E+02 0.004 30.5 14.8 38 168-205 367-407 (565)
247 PRK07114 keto-hydroxyglutarate 65.5 66 0.0014 29.6 9.9 100 172-316 82-187 (222)
248 TIGR01501 MthylAspMutase methy 65.5 83 0.0018 26.6 10.8 81 228-326 39-125 (134)
249 TIGR01182 eda Entner-Doudoroff 65.5 1.1E+02 0.0023 27.8 14.3 105 173-322 72-181 (204)
250 cd00958 DhnA Class I fructose- 65.4 47 0.001 30.2 9.1 22 54-75 142-163 (235)
251 cd06557 KPHMT-like Ketopantoat 65.4 12 0.00025 35.2 5.1 45 162-213 153-197 (254)
252 CHL00200 trpA tryptophan synth 65.1 1.2E+02 0.0027 28.5 13.3 99 224-333 56-168 (263)
253 PRK11613 folP dihydropteroate 65.0 1.3E+02 0.0028 28.7 15.3 115 133-279 14-144 (282)
254 TIGR01334 modD putative molybd 64.8 55 0.0012 31.1 9.5 65 173-250 200-264 (277)
255 COG0434 SgcQ Predicted TIM-bar 64.2 14 0.00031 34.3 5.2 53 162-216 28-92 (263)
256 PRK00311 panB 3-methyl-2-oxobu 64.1 13 0.00028 35.2 5.1 47 162-216 156-202 (264)
257 PRK08227 autoinducer 2 aldolas 64.0 1.3E+02 0.0029 28.4 12.9 116 177-319 103-226 (264)
258 PF01408 GFO_IDH_MocA: Oxidore 64.0 31 0.00067 27.4 6.8 45 169-216 74-120 (120)
259 PRK15452 putative protease; Pr 63.8 1E+02 0.0022 31.4 11.8 109 51-219 10-120 (443)
260 PRK00915 2-isopropylmalate syn 63.7 1.9E+02 0.0041 30.0 16.2 55 168-222 149-207 (513)
261 cd04726 KGPDC_HPS 3-Keto-L-gul 63.7 1E+02 0.0022 27.0 11.8 110 173-316 69-185 (202)
262 PRK09016 quinolinate phosphori 63.7 41 0.0009 32.3 8.5 62 173-250 220-281 (296)
263 cd04723 HisA_HisF Phosphoribos 63.7 83 0.0018 28.8 10.4 95 173-273 92-194 (233)
264 PF01208 URO-D: Uroporphyrinog 63.5 1.4E+02 0.0031 28.6 12.9 155 50-265 166-342 (343)
265 PF03102 NeuB: NeuB family; I 63.1 66 0.0014 29.9 9.6 94 167-273 55-177 (241)
266 cd04727 pdxS PdxS is a subunit 63.1 1.1E+02 0.0023 29.3 11.0 63 170-249 76-139 (283)
267 COG0107 HisF Imidazoleglycerol 63.1 1.1E+02 0.0024 28.6 10.6 101 176-279 91-210 (256)
268 cd07948 DRE_TIM_HCS Saccharomy 63.1 1.3E+02 0.0029 28.1 15.3 67 162-239 139-208 (262)
269 TIGR02090 LEU1_arch isopropylm 62.9 1.6E+02 0.0035 29.0 15.0 62 169-237 142-206 (363)
270 TIGR01037 pyrD_sub1_fam dihydr 62.9 1.4E+02 0.003 28.2 20.6 68 172-248 107-188 (300)
271 PF00478 IMPDH: IMP dehydrogen 62.7 30 0.00064 34.1 7.5 62 131-216 94-156 (352)
272 COG1902 NemA NADH:flavin oxido 62.3 1.7E+02 0.0037 29.0 13.2 153 147-314 23-255 (363)
273 PLN02495 oxidoreductase, actin 61.9 47 0.001 33.2 8.8 73 171-252 130-218 (385)
274 PF01081 Aldolase: KDPG and KH 61.6 1.1E+02 0.0024 27.6 10.4 107 172-318 71-177 (196)
275 PRK06252 methylcobalamin:coenz 60.5 1.6E+02 0.0035 28.2 13.2 83 174-265 246-335 (339)
276 TIGR02311 HpaI 2,4-dihydroxyhe 60.3 93 0.002 28.9 10.1 79 173-264 25-107 (249)
277 TIGR03151 enACPred_II putative 60.2 84 0.0018 30.2 10.1 85 170-273 76-166 (307)
278 PF00290 Trp_syntA: Tryptophan 60.0 1.5E+02 0.0033 27.8 16.6 90 172-273 106-203 (259)
279 TIGR01496 DHPS dihydropteroate 59.9 1.5E+02 0.0033 27.7 15.2 54 162-217 142-204 (257)
280 COG2876 AroA 3-deoxy-D-arabino 59.6 1.2E+02 0.0026 28.8 10.4 52 51-112 55-108 (286)
281 PRK10558 alpha-dehydro-beta-de 59.5 92 0.002 29.2 10.0 76 173-261 32-111 (256)
282 COG3457 Predicted amino acid r 59.4 1.2E+02 0.0026 29.6 10.6 77 180-262 92-183 (353)
283 PRK14114 1-(5-phosphoribosyl)- 59.1 95 0.0021 28.8 9.9 93 174-273 88-193 (241)
284 PRK06559 nicotinate-nucleotide 59.0 60 0.0013 31.2 8.6 62 173-250 209-270 (290)
285 cd02933 OYE_like_FMN Old yello 58.9 1.2E+02 0.0026 29.5 11.1 95 230-333 154-285 (338)
286 cd00408 DHDPS-like Dihydrodipi 58.8 1.6E+02 0.0034 27.5 21.7 150 53-261 16-171 (281)
287 PRK03170 dihydrodipicolinate s 58.7 1.6E+02 0.0035 27.7 18.6 149 53-260 20-174 (292)
288 cd07940 DRE_TIM_IPMS 2-isoprop 58.6 1.6E+02 0.0034 27.5 17.5 42 294-336 140-185 (268)
289 TIGR00222 panB 3-methyl-2-oxob 58.5 22 0.00048 33.6 5.6 45 162-213 155-199 (263)
290 cd08205 RuBisCO_IV_RLP Ribulos 58.1 82 0.0018 31.2 9.8 113 53-218 144-256 (367)
291 PRK08227 autoinducer 2 aldolas 57.5 1.7E+02 0.0037 27.6 11.7 89 174-278 48-151 (264)
292 CHL00200 trpA tryptophan synth 57.4 1.7E+02 0.0036 27.6 11.3 89 174-273 112-207 (263)
293 TIGR03239 GarL 2-dehydro-3-deo 57.4 1.1E+02 0.0023 28.6 9.9 76 173-261 25-104 (249)
294 KOG2949 Ketopantoate hydroxyme 57.1 1.2E+02 0.0026 28.2 9.8 87 169-259 118-215 (306)
295 PLN02417 dihydrodipicolinate s 57.0 1.7E+02 0.0038 27.5 13.4 141 53-254 20-164 (280)
296 cd03311 CIMS_C_terminal_like C 56.7 1.9E+02 0.0041 27.8 13.8 145 163-321 150-312 (332)
297 COG0407 HemE Uroporphyrinogen- 56.7 2.1E+02 0.0045 28.3 13.9 137 172-336 193-349 (352)
298 PRK00208 thiG thiazole synthas 56.7 1.7E+02 0.0038 27.4 17.1 28 51-81 20-47 (250)
299 TIGR01430 aden_deam adenosine 56.6 1.8E+02 0.004 27.7 12.3 28 161-190 65-92 (324)
300 TIGR00683 nanA N-acetylneurami 56.5 1.8E+02 0.0039 27.5 18.0 148 53-260 19-175 (290)
301 PLN02746 hydroxymethylglutaryl 56.4 2.1E+02 0.0045 28.2 14.2 100 174-275 127-248 (347)
302 PRK00125 pyrF orotidine 5'-pho 56.4 1.8E+02 0.004 27.6 12.2 178 135-334 16-212 (278)
303 PF00478 IMPDH: IMP dehydrogen 56.1 2.1E+02 0.0046 28.2 12.4 65 173-250 162-241 (352)
304 PRK06015 keto-hydroxyglutarate 55.9 1.6E+02 0.0034 26.7 13.5 100 173-316 68-171 (201)
305 PRK01033 imidazole glycerol ph 55.8 1.7E+02 0.0038 27.1 12.4 76 174-263 36-120 (258)
306 TIGR03855 NAD_NadX aspartate d 55.8 36 0.00077 31.4 6.4 45 168-215 48-95 (229)
307 PRK07226 fructose-bisphosphate 55.6 1.8E+02 0.0039 27.2 14.2 126 173-321 98-233 (267)
308 PRK09234 fbiC FO synthase; Rev 55.5 3.3E+02 0.0071 30.2 16.7 38 53-90 103-147 (843)
309 cd04733 OYE_like_2_FMN Old yel 55.3 68 0.0015 31.1 8.7 75 230-314 151-253 (338)
310 TIGR01303 IMP_DH_rel_1 IMP deh 55.3 73 0.0016 32.7 9.1 67 169-247 225-292 (475)
311 PF02515 CoA_transf_3: CoA-tra 55.2 66 0.0014 28.5 7.9 39 51-94 5-43 (191)
312 PRK00694 4-hydroxy-3-methylbut 55.1 2.7E+02 0.0058 29.4 13.0 48 171-219 48-98 (606)
313 PRK10128 2-keto-3-deoxy-L-rham 54.8 1.4E+02 0.003 28.3 10.3 78 173-263 31-112 (267)
314 PRK00784 cobyric acid synthase 54.7 99 0.0021 31.7 10.1 97 161-270 110-219 (488)
315 TIGR02313 HpaI-NOT-DapA 2,4-di 54.5 2E+02 0.0043 27.3 20.8 111 53-215 19-133 (294)
316 PRK06843 inosine 5-monophospha 54.4 2.2E+02 0.0047 28.7 12.1 62 174-248 208-284 (404)
317 PRK06978 nicotinate-nucleotide 54.3 88 0.0019 30.1 8.9 63 172-250 216-278 (294)
318 COG0042 tRNA-dihydrouridine sy 53.8 1.7E+02 0.0036 28.4 11.0 91 181-278 34-146 (323)
319 cd07940 DRE_TIM_IPMS 2-isoprop 53.7 1.9E+02 0.0041 26.9 15.4 67 169-239 144-213 (268)
320 PLN00124 succinyl-CoA ligase [ 53.6 81 0.0018 31.9 9.0 71 157-239 324-398 (422)
321 PRK06498 isocitrate lyase; Pro 53.4 28 0.0006 35.8 5.6 36 178-213 342-378 (531)
322 TIGR02631 xylA_Arthro xylose i 53.4 2.4E+02 0.0052 28.0 16.1 85 162-249 148-245 (382)
323 PRK09389 (R)-citramalate synth 53.2 2.7E+02 0.006 28.6 14.8 52 168-222 143-197 (488)
324 PRK08195 4-hyroxy-2-oxovalerat 53.2 2.3E+02 0.0049 27.7 14.8 96 174-275 94-196 (337)
325 COG0157 NadC Nicotinate-nucleo 53.1 1.1E+02 0.0024 29.1 9.2 64 173-250 200-263 (280)
326 PRK05692 hydroxymethylglutaryl 52.8 2.1E+02 0.0046 27.2 14.4 99 175-275 86-206 (287)
327 TIGR03217 4OH_2_O_val_ald 4-hy 52.7 2.3E+02 0.0049 27.6 11.8 96 174-275 93-195 (333)
328 PF06187 DUF993: Protein of un 52.7 2E+02 0.0043 28.4 10.9 88 161-253 125-231 (382)
329 TIGR02129 hisA_euk phosphoribo 52.6 1.5E+02 0.0033 27.8 10.1 99 173-274 89-207 (253)
330 cd07938 DRE_TIM_HMGL 3-hydroxy 52.4 2.1E+02 0.0045 27.0 11.4 100 174-275 79-200 (274)
331 TIGR01163 rpe ribulose-phospha 52.4 1.6E+02 0.0035 25.8 11.4 50 169-219 12-66 (210)
332 PRK10481 hypothetical protein; 52.3 1.9E+02 0.0042 26.6 11.3 107 161-273 70-211 (224)
333 cd07945 DRE_TIM_CMS Leptospira 52.1 2.1E+02 0.0046 27.0 15.1 65 169-239 148-215 (280)
334 TIGR01302 IMP_dehydrog inosine 51.1 2.3E+02 0.005 28.7 12.0 66 171-248 226-292 (450)
335 TIGR03128 RuMP_HxlA 3-hexulose 51.0 1.7E+02 0.0038 25.7 14.3 99 162-277 10-112 (206)
336 COG0279 GmhA Phosphoheptose is 50.9 81 0.0018 27.9 7.3 53 169-224 98-150 (176)
337 PRK13586 1-(5-phosphoribosyl)- 50.8 2E+02 0.0044 26.4 10.9 90 174-271 88-192 (232)
338 TIGR00736 nifR3_rel_arch TIM-b 50.6 2.1E+02 0.0045 26.5 11.8 102 162-278 78-199 (231)
339 PRK04208 rbcL ribulose bisopho 50.4 3E+02 0.0065 28.3 12.8 151 161-334 173-344 (468)
340 TIGR01769 GGGP geranylgeranylg 50.4 46 0.00099 30.2 6.1 44 170-214 13-58 (205)
341 PRK08610 fructose-bisphosphate 50.0 95 0.0021 29.7 8.4 26 225-252 85-110 (286)
342 TIGR00313 cobQ cobyric acid sy 49.9 1.5E+02 0.0033 30.3 10.5 83 180-270 121-216 (475)
343 COG5564 Predicted TIM-barrel e 49.8 53 0.0011 30.4 6.3 86 21-110 123-219 (276)
344 cd08207 RLP_NonPhot Ribulose b 49.8 2.9E+02 0.0062 27.9 12.4 100 161-277 156-269 (406)
345 TIGR02317 prpB methylisocitrat 49.4 2.4E+02 0.0053 26.9 12.8 96 173-276 93-205 (285)
346 PRK06543 nicotinate-nucleotide 49.3 1.2E+02 0.0026 29.0 8.9 61 174-250 206-266 (281)
347 cd01572 QPRTase Quinolinate ph 49.3 77 0.0017 29.9 7.7 59 176-250 197-255 (268)
348 cd04735 OYE_like_4_FMN Old yel 49.0 2.7E+02 0.0057 27.2 12.0 90 160-250 133-256 (353)
349 PRK07709 fructose-bisphosphate 48.4 1.2E+02 0.0027 28.9 8.9 27 224-252 84-110 (285)
350 PRK06052 5-methyltetrahydropte 48.3 2.7E+02 0.0057 27.5 11.2 228 56-321 39-318 (344)
351 PRK05742 nicotinate-nucleotide 48.2 1E+02 0.0022 29.3 8.4 61 174-250 202-262 (277)
352 COG0352 ThiE Thiamine monophos 48.1 2.2E+02 0.0047 26.0 11.9 141 172-331 25-178 (211)
353 TIGR00674 dapA dihydrodipicoli 48.1 2.4E+02 0.0052 26.5 17.7 149 53-260 17-171 (285)
354 PF00290 Trp_syntA: Tryptophan 47.9 2.4E+02 0.0053 26.5 12.6 157 170-331 26-219 (259)
355 PRK12738 kbaY tagatose-bisphos 47.9 1.5E+02 0.0033 28.3 9.5 71 177-252 13-107 (286)
356 cd07948 DRE_TIM_HCS Saccharomy 47.5 2.4E+02 0.0053 26.4 11.1 96 174-275 77-191 (262)
357 cd02801 DUS_like_FMN Dihydrour 47.4 2.1E+02 0.0045 25.5 12.9 96 172-273 71-188 (231)
358 cd02932 OYE_YqiM_FMN Old yello 47.1 2.7E+02 0.0059 26.8 19.8 112 160-273 143-295 (336)
359 TIGR01093 aroD 3-dehydroquinat 47.0 2.2E+02 0.0048 25.8 13.5 152 162-332 10-171 (228)
360 cd01568 QPRTase_NadC Quinolina 47.0 96 0.0021 29.2 8.0 58 177-248 197-254 (269)
361 TIGR00284 dihydropteroate synt 46.3 3.6E+02 0.0078 28.0 12.5 46 168-216 165-213 (499)
362 TIGR02321 Pphn_pyruv_hyd phosp 46.2 37 0.00079 32.6 5.0 39 172-213 170-209 (290)
363 PF04412 DUF521: Protein of un 46.0 2.4E+02 0.0053 28.3 11.0 127 177-320 209-358 (400)
364 cd01981 Pchlide_reductase_B Pc 46.0 1.1E+02 0.0024 30.6 8.8 24 311-334 165-190 (430)
365 cd01573 modD_like ModD; Quinol 45.9 1.5E+02 0.0032 28.0 9.1 56 178-246 200-255 (272)
366 cd04823 ALAD_PBGS_aspartate_ri 45.8 17 0.00036 35.2 2.6 25 51-75 286-310 (320)
367 PRK08883 ribulose-phosphate 3- 45.8 2.4E+02 0.0051 25.7 14.2 148 170-331 14-187 (220)
368 cd00384 ALAD_PBGS Porphobilino 45.7 17 0.00037 35.1 2.6 25 51-75 281-305 (314)
369 PRK07807 inosine 5-monophospha 45.6 3.6E+02 0.0078 27.8 12.6 25 56-80 227-251 (479)
370 COG0710 AroD 3-dehydroquinate 45.4 2.4E+02 0.0052 26.1 10.1 99 170-275 80-183 (231)
371 COG4992 ArgD Ornithine/acetylo 45.4 1.5E+02 0.0032 29.8 9.2 84 22-110 25-125 (404)
372 cd00954 NAL N-Acetylneuraminic 45.3 2.7E+02 0.0058 26.2 18.5 142 53-252 19-165 (288)
373 PRK11320 prpB 2-methylisocitra 45.3 2.9E+02 0.0062 26.5 12.7 97 172-276 97-210 (292)
374 cd04824 eu_ALAD_PBGS_cysteine_ 45.0 17 0.00037 35.1 2.6 25 51-75 287-311 (320)
375 TIGR00036 dapB dihydrodipicoli 44.9 62 0.0013 30.4 6.3 48 169-218 80-127 (266)
376 TIGR01740 pyrF orotidine 5'-ph 44.8 2.1E+02 0.0046 25.6 9.7 34 174-207 69-102 (213)
377 cd04741 DHOD_1A_like Dihydroor 44.7 2.8E+02 0.0061 26.3 18.4 128 181-334 119-292 (294)
378 COG0107 HisF Imidazoleglycerol 44.6 2.7E+02 0.0058 26.0 13.5 85 162-262 31-119 (256)
379 PRK13384 delta-aminolevulinic 44.5 18 0.00039 35.0 2.6 25 51-75 290-314 (322)
380 cd03312 CIMS_N_terminal_like C 44.5 3.2E+02 0.0069 26.9 14.7 135 163-320 177-323 (360)
381 cd04724 Tryptophan_synthase_al 44.4 2.6E+02 0.0056 25.7 12.1 90 173-273 96-192 (242)
382 PRK04128 1-(5-phosphoribosyl)- 43.9 2.2E+02 0.0047 26.1 9.7 68 177-251 91-164 (228)
383 TIGR01859 fruc_bis_ald_ fructo 43.7 2.9E+02 0.0063 26.2 15.8 101 173-278 89-210 (282)
384 TIGR02090 LEU1_arch isopropylm 43.2 3.3E+02 0.0072 26.7 17.8 41 294-335 138-182 (363)
385 cd03465 URO-D_like The URO-D _ 43.0 3E+02 0.0064 26.1 14.7 145 163-334 163-330 (330)
386 CHL00040 rbcL ribulose-1,5-bis 42.7 4E+02 0.0086 27.5 12.1 147 161-330 180-347 (475)
387 PRK05222 5-methyltetrahydropte 42.6 2.5E+02 0.0053 30.8 11.2 21 173-193 652-672 (758)
388 cd04724 Tryptophan_synthase_al 42.5 2.7E+02 0.006 25.5 11.5 101 171-277 17-140 (242)
389 PLN02321 2-isopropylmalate syn 42.4 4.6E+02 0.01 28.1 18.5 44 294-337 237-283 (632)
390 PRK00278 trpC indole-3-glycero 42.3 1.8E+02 0.0039 27.1 9.0 63 173-250 125-188 (260)
391 TIGR03326 rubisco_III ribulose 42.2 3.8E+02 0.0082 27.1 12.0 147 161-334 157-328 (412)
392 TIGR03849 arch_ComA phosphosul 42.1 2.3E+02 0.005 26.4 9.4 140 180-333 23-184 (237)
393 PRK08255 salicylyl-CoA 5-hydro 42.1 4.9E+02 0.011 28.3 13.8 111 160-273 540-692 (765)
394 PRK05718 keto-hydroxyglutarate 42.1 2.7E+02 0.0058 25.3 12.6 38 162-206 25-63 (212)
395 cd06824 PLPDE_III_Yggs_like Py 41.9 1.5E+02 0.0032 26.8 8.2 65 186-251 95-162 (224)
396 PLN02826 dihydroorotate dehydr 41.8 3.8E+02 0.0083 27.0 14.2 144 164-334 200-390 (409)
397 PLN02433 uroporphyrinogen deca 41.8 3.4E+02 0.0073 26.3 16.5 41 295-335 290-337 (345)
398 cd00331 IGPS Indole-3-glycerol 41.7 2.6E+02 0.0055 25.0 10.4 62 173-249 86-148 (217)
399 PF00490 ALAD: Delta-aminolevu 41.6 21 0.00046 34.6 2.6 25 51-75 291-315 (324)
400 cd01129 PulE-GspE PulE/GspE Th 41.6 1.5E+02 0.0032 27.8 8.3 58 170-239 138-195 (264)
401 KOG2794 Delta-aminolevulinic a 41.5 20 0.00044 33.9 2.4 24 52-75 304-327 (340)
402 cd07943 DRE_TIM_HOA 4-hydroxy- 41.3 2.9E+02 0.0064 25.5 17.6 81 242-337 98-184 (263)
403 PRK02083 imidazole glycerol ph 41.2 2.9E+02 0.0062 25.4 11.5 94 177-273 92-202 (253)
404 COG3623 SgaU Putative L-xylulo 41.2 98 0.0021 29.0 6.7 102 55-193 54-159 (287)
405 TIGR03249 KdgD 5-dehydro-4-deo 41.1 3.2E+02 0.0069 25.9 18.2 145 53-261 24-176 (296)
406 PF00549 Ligase_CoA: CoA-ligas 41.0 38 0.00083 29.2 3.9 73 225-311 56-137 (153)
407 TIGR03586 PseI pseudaminic aci 40.9 1.3E+02 0.0029 29.3 8.1 97 168-274 77-199 (327)
408 PTZ00344 pyridoxal kinase; Pro 40.7 2.2E+02 0.0048 26.9 9.5 78 159-237 55-136 (296)
409 cd02071 MM_CoA_mut_B12_BD meth 40.7 2E+02 0.0043 23.3 9.6 38 228-266 37-77 (122)
410 COG0673 MviM Predicted dehydro 40.7 60 0.0013 30.8 5.7 46 169-217 79-126 (342)
411 KOG2733 Uncharacterized membra 40.6 2.9E+02 0.0062 27.6 10.1 61 191-262 41-104 (423)
412 cd04728 ThiG Thiazole synthase 40.4 3.2E+02 0.0069 25.7 17.2 28 51-81 19-46 (248)
413 cd01966 Nitrogenase_NifN_1 Nit 40.2 1.3E+02 0.0029 30.1 8.3 24 310-334 159-182 (417)
414 TIGR02319 CPEP_Pphonmut carbox 40.2 3.4E+02 0.0075 26.0 12.2 91 173-271 97-204 (294)
415 cd03307 Mta_CmuA_like MtaA_Cmu 40.1 3.4E+02 0.0073 25.9 16.6 39 295-333 283-325 (326)
416 cd08209 RLP_DK-MTP-1-P-enolase 40.1 3.5E+02 0.0076 27.1 11.0 150 161-334 137-307 (391)
417 TIGR00379 cobB cobyrinic acid 39.6 2.6E+02 0.0056 28.4 10.3 104 162-277 63-178 (449)
418 PF03481 SUA5: Putative GTP-bi 39.5 41 0.00089 27.7 3.8 44 162-205 79-122 (125)
419 PRK04302 triosephosphate isome 39.3 2.9E+02 0.0062 25.0 9.7 43 174-216 127-180 (223)
420 PRK09250 fructose-bisphosphate 39.1 3.9E+02 0.0085 26.4 13.7 79 177-259 155-248 (348)
421 TIGR00078 nadC nicotinate-nucl 38.7 1.5E+02 0.0032 28.0 7.8 59 174-248 191-249 (265)
422 PRK08185 hypothetical protein; 38.7 2.1E+02 0.0046 27.3 8.9 68 180-252 11-101 (283)
423 cd03307 Mta_CmuA_like MtaA_Cmu 38.4 3.6E+02 0.0078 25.7 12.3 81 174-263 237-324 (326)
424 COG1646 Predicted phosphate-bi 38.2 1.4E+02 0.0031 27.7 7.3 61 213-278 16-80 (240)
425 PRK02506 dihydroorotate dehydr 38.1 3.7E+02 0.008 25.8 16.4 44 174-218 111-166 (310)
426 PF09370 TIM-br_sig_trns: TIM- 38.1 1.5E+02 0.0032 28.2 7.5 66 172-246 161-243 (268)
427 TIGR01496 DHPS dihydropteroate 38.1 50 0.0011 30.9 4.6 41 294-335 20-70 (257)
428 PRK07028 bifunctional hexulose 38.1 4.1E+02 0.0089 26.6 11.4 89 173-273 73-167 (430)
429 PF01791 DeoC: DeoC/LacD famil 38.0 1.2E+02 0.0026 27.6 7.0 127 173-319 81-230 (236)
430 TIGR00640 acid_CoA_mut_C methy 38.0 59 0.0013 27.2 4.5 40 294-336 40-81 (132)
431 cd04727 pdxS PdxS is a subunit 37.9 3.7E+02 0.008 25.7 11.9 125 172-332 19-161 (283)
432 PRK09283 delta-aminolevulinic 37.8 27 0.00058 33.9 2.6 25 51-75 289-313 (323)
433 PF01320 Colicin_Pyocin: Colic 37.5 27 0.00058 27.2 2.1 47 252-311 29-80 (85)
434 TIGR01346 isocit_lyase isocitr 37.4 52 0.0011 34.1 4.7 58 180-238 378-438 (527)
435 PRK14847 hypothetical protein; 37.3 3.4E+02 0.0075 26.5 10.3 21 315-335 296-316 (333)
436 cd06822 PLPDE_III_YBL036c_euk 37.2 1.2E+02 0.0026 27.9 6.8 70 181-253 89-164 (227)
437 PRK08005 epimerase; Validated 37.0 3.1E+02 0.0068 24.9 9.4 78 173-266 73-157 (210)
438 TIGR01306 GMP_reduct_2 guanosi 36.8 47 0.001 32.3 4.2 41 294-335 66-106 (321)
439 cd02809 alpha_hydroxyacid_oxid 36.7 3E+02 0.0066 26.1 9.8 90 171-274 84-178 (299)
440 COG0413 PanB Ketopantoate hydr 36.6 3.8E+02 0.0081 25.4 13.6 113 133-271 76-199 (268)
441 TIGR01371 met_syn_B12ind 5-met 36.6 6E+02 0.013 27.8 13.9 80 163-252 173-260 (750)
442 TIGR00676 fadh2 5,10-methylene 36.6 3.6E+02 0.0079 25.2 10.5 149 21-217 31-193 (272)
443 PLN02892 isocitrate lyase 36.1 58 0.0012 34.0 4.9 33 180-212 399-432 (570)
444 COG0113 HemB Delta-aminolevuli 36.0 29 0.00064 33.4 2.6 25 51-75 294-318 (330)
445 cd04734 OYE_like_3_FMN Old yel 35.9 4.2E+02 0.0091 25.8 20.2 112 160-273 130-290 (343)
446 PRK00779 ornithine carbamoyltr 35.5 3.6E+02 0.0079 25.8 10.1 80 184-278 48-127 (304)
447 PRK11579 putative oxidoreducta 35.5 1.2E+02 0.0026 29.2 6.9 47 169-218 76-124 (346)
448 cd01571 NAPRTase_B Nicotinate 35.5 2.5E+02 0.0054 27.0 8.9 60 181-251 211-275 (302)
449 COG1679 Predicted aconitase [G 35.2 4.7E+02 0.01 26.2 15.2 131 174-320 210-358 (403)
450 cd00740 MeTr MeTr subgroup of 35.2 3.7E+02 0.0081 25.0 11.4 91 172-277 30-128 (252)
451 PLN02716 nicotinate-nucleotide 34.9 2.5E+02 0.0055 27.2 8.8 56 180-250 228-291 (308)
452 PF07302 AroM: AroM protein; 34.4 3.7E+02 0.0081 24.7 12.0 104 161-273 67-207 (221)
453 PRK01261 aroD 3-dehydroquinate 34.4 2.4E+02 0.0052 26.0 8.3 49 162-217 31-84 (229)
454 TIGR00977 LeuA_rel 2-isopropyl 34.2 5.6E+02 0.012 26.7 14.7 139 65-249 91-232 (526)
455 cd06818 PLPDE_III_cryptic_DSD 34.0 3.1E+02 0.0067 27.0 9.7 66 181-251 98-167 (382)
456 cd04731 HisF The cyclase subun 34.0 3.6E+02 0.0078 24.4 11.3 92 179-273 91-198 (243)
457 TIGR02629 L_rham_iso_rhiz L-rh 34.0 5.1E+02 0.011 26.2 11.3 178 53-266 99-303 (412)
458 cd00739 DHPS DHPS subgroup of 33.9 65 0.0014 30.2 4.6 65 271-344 7-81 (257)
459 cd00947 TBP_aldolase_IIB Tagat 33.4 2.5E+02 0.0054 26.7 8.5 27 224-252 76-102 (276)
460 PTZ00314 inosine-5'-monophosph 33.4 5.5E+02 0.012 26.5 11.6 64 171-246 243-307 (495)
461 PRK14046 malate--CoA ligase su 33.4 2.8E+02 0.006 27.7 9.2 27 55-81 179-205 (392)
462 COG3684 LacD Tagatose-1,6-bisp 33.3 98 0.0021 29.3 5.4 67 171-251 189-263 (306)
463 PRK05398 formyl-coenzyme A tra 33.2 1.6E+02 0.0035 29.5 7.6 39 51-94 74-112 (416)
464 PTZ00413 lipoate synthase; Pro 33.2 5.1E+02 0.011 26.0 10.7 20 318-337 305-324 (398)
465 TIGR02810 agaZ_gatZ D-tagatose 33.2 5.3E+02 0.011 26.1 13.9 102 52-189 21-124 (420)
466 PRK12595 bifunctional 3-deoxy- 33.1 4.9E+02 0.011 25.7 13.4 29 50-78 127-155 (360)
467 PRK04452 acetyl-CoA decarbonyl 33.0 3.4E+02 0.0073 26.4 9.4 102 228-333 75-194 (319)
468 PRK06801 hypothetical protein; 33.0 2.7E+02 0.0058 26.6 8.6 71 177-252 13-107 (286)
469 COG0074 SucD Succinyl-CoA synt 33.0 4.5E+02 0.0098 25.2 10.6 24 253-278 102-125 (293)
470 TIGR03569 NeuB_NnaB N-acetylne 32.9 2.4E+02 0.0051 27.6 8.4 90 174-273 102-199 (329)
471 PRK08255 salicylyl-CoA 5-hydro 32.8 2.4E+02 0.0053 30.7 9.3 65 241-314 563-655 (765)
472 PLN02475 5-methyltetrahydropte 32.7 7E+02 0.015 27.4 14.2 164 55-268 586-756 (766)
473 cd00537 MTHFR Methylenetetrahy 32.6 4.1E+02 0.0089 24.7 12.0 53 162-218 145-197 (274)
474 TIGR01859 fruc_bis_ald_ fructo 32.3 2.7E+02 0.0059 26.4 8.6 36 179-217 13-48 (282)
475 cd07941 DRE_TIM_LeuA3 Desulfob 32.2 4.3E+02 0.0092 24.7 14.4 100 173-275 83-202 (273)
476 PRK10605 N-ethylmaleimide redu 32.1 5E+02 0.011 25.5 11.6 112 162-273 153-297 (362)
477 PLN02321 2-isopropylmalate syn 32.1 6.6E+02 0.014 26.9 15.3 57 162-222 238-298 (632)
478 PRK07094 biotin synthase; Prov 31.9 2.4E+02 0.0052 26.9 8.3 78 171-253 129-219 (323)
479 TIGR02321 Pphn_pyruv_hyd phosp 31.8 4.6E+02 0.01 25.0 12.5 98 173-275 95-212 (290)
480 TIGR00167 cbbA ketose-bisphosp 31.7 2.9E+02 0.0062 26.4 8.6 27 224-252 84-110 (288)
481 TIGR01769 GGGP geranylgeranylg 31.6 1.3E+02 0.0028 27.3 5.9 49 228-277 11-62 (205)
482 COG0191 Fba Fructose/tagatose 31.5 3.3E+02 0.0072 26.1 8.8 76 172-252 8-108 (286)
483 cd08208 RLP_Photo Ribulose bis 31.3 3.3E+02 0.0072 27.6 9.3 100 161-277 173-286 (424)
484 PF01261 AP_endonuc_2: Xylose 31.3 3E+02 0.0065 23.5 8.3 73 162-238 106-183 (213)
485 PF02581 TMP-TENI: Thiamine mo 31.3 3.5E+02 0.0075 23.4 11.0 141 169-331 13-169 (180)
486 PF02729 OTCace_N: Aspartate/o 31.1 3.2E+02 0.007 23.0 8.6 75 191-278 49-123 (142)
487 PRK04147 N-acetylneuraminate l 30.8 4.6E+02 0.01 24.7 17.7 143 53-254 22-169 (293)
488 PRK13210 putative L-xylulose 5 30.8 4.2E+02 0.0092 24.2 10.8 72 162-237 127-200 (284)
489 TIGR00262 trpA tryptophan synt 30.7 4.5E+02 0.0097 24.5 17.8 88 172-265 28-138 (256)
490 TIGR01858 tag_bisphos_ald clas 30.6 3E+02 0.0065 26.3 8.5 71 177-252 11-105 (282)
491 PRK10206 putative oxidoreducta 30.4 1.8E+02 0.0038 28.3 7.1 46 169-217 76-123 (344)
492 PRK06806 fructose-bisphosphate 30.4 3.4E+02 0.0074 25.8 8.9 84 177-265 13-122 (281)
493 PRK12857 fructose-1,6-bisphosp 30.4 3E+02 0.0066 26.2 8.5 69 179-252 15-107 (284)
494 TIGR00126 deoC deoxyribose-pho 30.0 4.2E+02 0.0092 24.0 15.4 147 161-334 15-174 (211)
495 cd04729 NanE N-acetylmannosami 30.0 3E+02 0.0065 24.6 8.2 57 210-273 9-65 (219)
496 cd00381 IMPDH IMPDH: The catal 30.0 1.8E+02 0.004 28.1 7.1 63 173-248 148-225 (325)
497 PRK09195 gatY tagatose-bisphos 29.9 2.7E+02 0.0058 26.6 8.1 70 178-252 14-107 (284)
498 PRK01060 endonuclease IV; Prov 29.9 4.4E+02 0.0096 24.2 11.3 18 53-70 45-62 (281)
499 PRK06801 hypothetical protein; 29.9 5E+02 0.011 24.8 14.3 103 174-279 90-214 (286)
500 PRK13302 putative L-aspartate 29.8 1.2E+02 0.0026 28.5 5.7 43 169-214 79-121 (271)
No 1
>PLN02489 homocysteine S-methyltransferase
Probab=100.00 E-value=7.6e-82 Score=608.90 Aligned_cols=326 Identities=76% Similarity=1.270 Sum_probs=290.2
Q ss_pred chHHHHHhhccCCeEEEecchHHHHHHcCCCCCCCccchhccCCChHHHHHHHHHHHHhhcceeeccccccCHHhHHhCC
Q 019107 9 TSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKG 88 (346)
Q Consensus 9 ~~~~~~~l~~~~~~lilDGg~gt~L~~~G~~~~~~lwsa~~ll~~Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~~g 88 (346)
+..|+++|++.++++||||||||+|+++|+++++|+||+.+|+++||+|+++|++|++||||||+|||||+|+.+|.++|
T Consensus 9 ~~~~~~~l~~~~~~lilDGgmGT~Le~~g~~~~~~lws~~~ll~~Pe~V~~vH~~yl~AGAdvI~TnTy~a~~~~l~~~g 88 (335)
T PLN02489 9 SSLLEDLLRQAGGCAVIDGGFATELERHGADLNDPLWSAKCLITSPHLIRKVHLDYLEAGADIIITASYQATIQGFESRG 88 (335)
T ss_pred hHHHHHHHHhcCCEEEEEChHHHHHHhCCCCCCCCccchhhhcCCHHHHHHHHHHHHHhCCCEEEecccccCHHHHHHcC
Confidence 45688898854569999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHH
Q 019107 89 FSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKE 168 (346)
Q Consensus 89 ~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~ 168 (346)
++.+++++++++||+|||+|++++..+.....+ .+.+....+++++|||||||+|+++.+|+||+|+|++.++++++++
T Consensus 89 ~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~ 167 (335)
T PLN02489 89 LSREESETLLRKSVEIACEARDIFWDKCQKGST-SRPGRELSYRPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKD 167 (335)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-cccccccCCCCcEEEEEcCCccccccCCcccCCCCccCCCHHHHHH
Confidence 987889999999999999999876332100000 0000111235799999999999999999999999997789999999
Q ss_pred HHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEE
Q 019107 169 FHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI 248 (346)
Q Consensus 169 ~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGv 248 (346)
+|++|++.|.++|||+|+|||||++.|++++++++++.+.++|+||||+++++++|++|+++.+++..+++..++++||+
T Consensus 168 ~~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGi 247 (335)
T PLN02489 168 FHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIADSCKKVVAVGI 247 (335)
T ss_pred HHHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHHHHHhcCCceEEEe
Confidence 99999999999999999999999999999999999987656999999999999999999999999998865457899999
Q ss_pred CCCChhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeEEeecCCCchHHHHHH
Q 019107 249 NCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAI 328 (346)
Q Consensus 249 NC~~p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivGGCCGt~P~hI~al 328 (346)
||++|+.+..++++++.....|+++|||+|..|+...+.|......+|++|++++++|++.|++||||||||||+||++|
T Consensus 248 NC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~iIGGCCgt~P~hI~al 327 (335)
T PLN02489 248 NCTPPRFIHGLILSIRKVTSKPIVVYPNSGETYDGEAKEWVESTGVSDEDFVSYVNKWRDAGASLIGGCCRTTPNTIRAI 327 (335)
T ss_pred cCCCHHHHHHHHHHHHhhcCCcEEEECCCCCCCCCccCcccCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCCHHHHHHH
Confidence 99999999999999998888999999999999988777887655567899999999999999999999999999999999
Q ss_pred HHHHcCC
Q 019107 329 SRVLSNK 335 (346)
Q Consensus 329 ~~~~~~~ 335 (346)
++.++.+
T Consensus 328 ~~~l~~~ 334 (335)
T PLN02489 328 SKALSER 334 (335)
T ss_pred HHHHhcC
Confidence 9998753
No 2
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=100.00 E-value=1.3e-78 Score=580.37 Aligned_cols=301 Identities=52% Similarity=0.880 Sum_probs=276.0
Q ss_pred HHHHHhhccCCeEEEecchHHHHHHcCCCCCCCccchhccCCChHHHHHHHHHHHHhhcceeeccccccCHHhHHhCCCC
Q 019107 11 FMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFS 90 (346)
Q Consensus 11 ~~~~~l~~~~~~lilDGg~gt~L~~~G~~~~~~lwsa~~ll~~Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~~g~~ 90 (346)
.|+++|++ ++++|+||||||+|+++|++...|+||+.+|+++||+|+++|++|++||||||+||||++|+.+|.++|++
T Consensus 3 ~~~~~l~~-~~~lilDGgmGT~L~~~g~~~~~~~ws~~~l~~~Pe~V~~vH~~yl~AGadiI~TnTy~a~~~~l~~~g~~ 81 (304)
T PRK09485 3 PFKELLAQ-GPVLILDGALATELEARGCDLNDSLWSAKVLLENPELIYQVHLDYFRAGADCAITASYQATFQGFAARGLS 81 (304)
T ss_pred hHHHHhcc-CCEEEEeChHHHHHHHcCCCCCCcchhhhhhccChHHHHHHHHHHHHhCCCEEEeeccccCHHHHHHcCCC
Confidence 58888874 56999999999999999998888999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHH
Q 019107 91 TEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFH 170 (346)
Q Consensus 91 ~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~ 170 (346)
.+++++||++||+||++|++.+. ..+++|||||||+|.++.+|+||+|+|+ +++++++++|
T Consensus 82 ~~~~~~l~~~av~lA~~a~~~~~-----------------~~~~~VaGsiGP~g~~l~~~~~y~g~~~--~~~~~~~~~~ 142 (304)
T PRK09485 82 EAEAEELIRRSVELAKEARDEFW-----------------AEKPLVAGSVGPYGAYLADGSEYRGDYG--LSEEELQDFH 142 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc-----------------cCCceEEEecCCcccccCCCCCCCCCCC--CCHHHHHHHH
Confidence 77899999999999999997641 1258999999999999999999999985 6999999999
Q ss_pred HHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECC
Q 019107 171 RRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (346)
Q Consensus 171 ~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC 250 (346)
++|++.|.++|||+|+|||||++.|++++++++++...++|||+||+++++++|++|+++.+++..+.+...+++||+||
T Consensus 143 ~~q~~~l~~~gvD~i~~ET~~~~~E~~~~~~~~~~~~~~~pv~is~~~~~~g~l~~G~~~~~~~~~l~~~~~~~~iGiNC 222 (304)
T PRK09485 143 RPRIEALAEAGADLLACETIPNLDEAEALVELLKEEFPGVPAWLSFTLRDGTHISDGTPLAEAAALLAASPQVVAVGVNC 222 (304)
T ss_pred HHHHHHHhhCCCCEEEEeccCCHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcCCCCCCHHHHHHHHhcCCCceEEEecC
Confidence 99999999999999999999999999999999996533599999999999999999999999999986544689999999
Q ss_pred CChhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeEEeecCCCchHHHHHHHH
Q 019107 251 TSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISR 330 (346)
Q Consensus 251 ~~p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivGGCCGt~P~hI~al~~ 330 (346)
++|+.+.++|+.++.+.+.|+++|||+|..|+.....|... .++++|++++++|++.|++||||||||||+||++|++
T Consensus 223 ~~p~~~~~~l~~~~~~~~~pl~~~PNaG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~G~~iiGGCCGttP~hI~al~~ 300 (304)
T PRK09485 223 TAPELVTAAIAALRAVTDKPLVVYPNSGEVYDAVTKTWHGP--ADDASLGELAPEWYAAGARLIGGCCRTTPEDIAALAA 300 (304)
T ss_pred CCHHHHHHHHHHHHhccCCcEEEECCCCCCCCCCCCcccCC--CChHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHHHHH
Confidence 99999999999998877899999999999888766677643 2355899999999999999999999999999999999
Q ss_pred HHc
Q 019107 331 VLS 333 (346)
Q Consensus 331 ~~~ 333 (346)
.++
T Consensus 301 ~l~ 303 (304)
T PRK09485 301 ALK 303 (304)
T ss_pred Hhh
Confidence 875
No 3
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-77 Score=559.02 Aligned_cols=311 Identities=43% Similarity=0.738 Sum_probs=284.7
Q ss_pred CCchHHHHHhhccCCeEEEecchHHHHHHcCCC-CCCCccchhccCCChHHHHHHHHHHHHhhcceeeccccccCHHhHH
Q 019107 7 GTTSFMTDFLQKCGGYSVVDGGFATELERHGAD-LNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFE 85 (346)
Q Consensus 7 ~~~~~~~~~l~~~~~~lilDGg~gt~L~~~G~~-~~~~lwsa~~ll~~Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~ 85 (346)
+..+...+++...++++|+||||||+|+++|++ .++|+||+.+++++||+|+++|++|++||||||+|||||++...+.
T Consensus 4 ~~~~~~~~~~~~~~~vlvlDGG~~t~Ler~g~~~~~~PlWs~~~~~s~Pe~V~~~H~efL~aGadIi~T~Tyqas~~~~~ 83 (317)
T KOG1579|consen 4 GRSKLKKDILENTGRVLVLDGGFGTQLERRGYDKVDSPLWSAEALASNPEAVEQVHKEFLRAGADIISTNTYQASSDGFE 83 (317)
T ss_pred cchhhhHHHHhccCcEEEEeChHHHHHHhhcccccCCCCCCchhhccChHHHHHHHHHHHHccCcEEEEeeeeecchHHh
Confidence 344556667766689999999999999999998 5679999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCcEEEEecCCccCCcCCCCCCCCCCCCCCCHHH
Q 019107 86 AKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLET 165 (346)
Q Consensus 86 ~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e 165 (346)
.+ .+.++..+++++.+++|+.|++.+..+ .-+|+||+||+|+++++|+||+|+|++..++++
T Consensus 84 ~~-~~~~~~~el~~~s~~~a~~Are~~~~~-----------------~~~v~gsiGp~~A~l~~g~eytg~Y~~~~~~~e 145 (317)
T KOG1579|consen 84 EY-VEEEELIELYEKSVELADLARERLGEE-----------------TGYVAGSIGPYGATLADGSEYTGIYGDNVEFEE 145 (317)
T ss_pred hh-hhhHHHHHHHHHHHHHHHHHHHHhccc-----------------cceeeeecccccceecCCcccccccccccCHHH
Confidence 88 556789999999999999999987533 129999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceE
Q 019107 166 LKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVA 245 (346)
Q Consensus 166 ~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~a 245 (346)
+++||++|++.|.++|||+|+|||+|+..|++++++++++...++|+||||+|.+.+++++|+++++++..+.+..++.+
T Consensus 146 l~~~~k~qle~~~~~gvD~L~fETip~~~EA~a~l~~l~~~~~~~p~~is~t~~d~g~l~~G~t~e~~~~~~~~~~~~~~ 225 (317)
T KOG1579|consen 146 LYDFFKQQLEVFLEAGVDLLAFETIPNVAEAKAALELLQELGPSKPFWISFTIKDEGRLRSGETGEEAAQLLKDGINLLG 225 (317)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeecCCHHHHHHHHHHHHhcCCCCcEEEEEEecCCCcccCCCcHHHHHHHhccCCceEE
Confidence 99999999999999999999999999999999999999997568999999999999999999999999998876556999
Q ss_pred EEECCCChhhHHHHHHHHh-hhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeEEeecCCCchHH
Q 019107 246 VGINCTSPRFIHGLILSVR-KVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNT 324 (346)
Q Consensus 246 vGvNC~~p~~~~~~l~~l~-~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivGGCCGt~P~h 324 (346)
|||||++|..+..+++.+. +.++.|+++|||+|++||...+.|.+. ....++|..++++|++.||+||||||||+|.|
T Consensus 226 IGvNC~~~~~~~~~~~~L~~~~~~~~llvYPNsGe~yd~~~g~~~~~-~~~~~~~~~~~~~~~~lGv~iIGGCCrt~P~~ 304 (317)
T KOG1579|consen 226 IGVNCVSPNFVEPLLKELMAKLTKIPLLVYPNSGEVYDNEKGGWIPT-PFGLEPWQTYVKKAIDLGVRIIGGCCRTTPKH 304 (317)
T ss_pred EEeccCCchhccHHHHHHhhccCCCeEEEecCCCCCCccccCcccCC-CcccchHHHHHHHHHhcccceeCcccCCChHH
Confidence 9999999999999999988 556899999999999999988899875 33456699999999999999999999999999
Q ss_pred HHHHHHHHcCCC
Q 019107 325 IKAISRVLSNKS 336 (346)
Q Consensus 325 I~al~~~~~~~~ 336 (346)
|++|++++++..
T Consensus 305 I~aI~e~v~~~~ 316 (317)
T KOG1579|consen 305 IRAIAEAVKKYR 316 (317)
T ss_pred HHHHHHHhhccc
Confidence 999999998763
No 4
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=100.00 E-value=5e-77 Score=547.02 Aligned_cols=296 Identities=45% Similarity=0.785 Sum_probs=273.1
Q ss_pred HHhhccCCeEEEecchHHHHHHcCCCCCCCccchhccCCChHHHHHHHHHHHHhhcceeeccccccCHHhHHhCCCCHHH
Q 019107 14 DFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEE 93 (346)
Q Consensus 14 ~~l~~~~~~lilDGg~gt~L~~~G~~~~~~lwsa~~ll~~Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~~g~~~~~ 93 (346)
+.+.+ ..++||||||+|||+++|.++++|+||+.+|+++||+|+++|.+|++||||||+|+|||+++..+.+. .+.++
T Consensus 3 ~~l~~-~~vliLDGG~~tELe~rG~~l~~plWSa~~l~~~peiv~~vh~df~~aGa~ii~T~TYqa~~~~~~e~-~~~~~ 80 (300)
T COG2040 3 HELDT-LSVLILDGGLATELERRGCDLSDPLWSALALVDEPEIVRNVHADFLRAGADIITTATYQATPEGFAER-VSEDE 80 (300)
T ss_pred ccccc-CCEEEecCchhHHHHhcCCCCCchhhhhhhcccCHHHHHHHHHHHHHhcCcEEeehhhhcCHHHHHHh-cchhH
Confidence 34443 67999999999999999999999999999999999999999999999999999999999999999887 77788
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 019107 94 AEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRR 173 (346)
Q Consensus 94 ~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~ 173 (346)
++.+++.+|+|||+|++.+..+ ...|+|||||||+++.+ ||+|+|+. +.+.+++||++|
T Consensus 81 ~~~l~~~sv~la~~ard~~g~~-----------------~~~iagsiGP~ga~~a~--Ey~g~Y~~--~~d~~~~fh~~r 139 (300)
T COG2040 81 AKQLIRRSVELARAARDAYGEE-----------------NQNIAGSLGPYGAALAD--EYRGDYGA--SQDALYKFHRPR 139 (300)
T ss_pred HHHHHHHHHHHHHHHHHHhccc-----------------ccccceeccchhhhcCh--hhcCccCc--cHHHHHHHHHHH
Confidence 9999999999999999987533 34599999999999988 99999986 778889999999
Q ss_pred HHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCCh
Q 019107 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSP 253 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~p 253 (346)
+++|.++|||+|.+||+|++.|++++++++++++ +|+|||||++++.+|++|+++.+++..++...++.++||||++|
T Consensus 140 ie~l~~ag~Dlla~ETip~i~Ea~Aiv~l~~~~s--~p~wISfT~~d~~~lr~Gt~l~eaa~~~~~~~~iaa~gvNC~~p 217 (300)
T COG2040 140 IEALNEAGADLLACETLPNITEAEAIVQLVQEFS--KPAWISFTLNDDTRLRDGTPLSEAAAILAGLPNIAALGVNCCHP 217 (300)
T ss_pred HHHHHhCCCcEEeecccCChHHHHHHHHHHHHhC--CceEEEEEeCCCCccCCCccHHHHHHHHhcCcchhheeeccCCh
Confidence 9999999999999999999999999999999984 99999999999999999999999999998777899999999999
Q ss_pred hhHHHHHHHHh-hhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeEEeecCCCchHHHHHHHHHH
Q 019107 254 RFIHGLILSVR-KVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVL 332 (346)
Q Consensus 254 ~~~~~~l~~l~-~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivGGCCGt~P~hI~al~~~~ 332 (346)
+++..+++.+. ....+|++||||+|+.||+..+.|..+ ...++.|...+++|++.|++||||||+|+|.||++|++++
T Consensus 218 ~~~~a~i~~l~~~~~~~piivYPNSGe~~d~~~k~w~~p-~~~~~~~~~~a~~w~~~GA~iiGGCCrt~p~~I~ei~~~~ 296 (300)
T COG2040 218 DHIPAAIEELSKLLTGKPIIVYPNSGEQYDPAGKTWHGP-ALSADSYSTLAKSWVEAGARIIGGCCRTGPAHIAEIAKAL 296 (300)
T ss_pred hhhHHHHHHHHhcCCCCceEEcCCcccccCcCCCcCCCC-CCchhHHHHHHHHHHhcccceeeeccCCChHHHHHHHHHH
Confidence 99999999984 346899999999999999988889752 2457889999999999999999999999999999999999
Q ss_pred cCC
Q 019107 333 SNK 335 (346)
Q Consensus 333 ~~~ 335 (346)
++.
T Consensus 297 ~~~ 299 (300)
T COG2040 297 KKA 299 (300)
T ss_pred hcc
Confidence 864
No 5
>PRK07534 methionine synthase I; Validated
Probab=100.00 E-value=2.2e-71 Score=535.67 Aligned_cols=295 Identities=26% Similarity=0.371 Sum_probs=255.0
Q ss_pred hHHHHHhhccCCeEEEecchHHHHHHcCCCCCC--CccchhccCCChHHHHHHHHHHHHhhcceeeccccccCHHhHHhC
Q 019107 10 SFMTDFLQKCGGYSVVDGGFATELERHGADLND--PLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAK 87 (346)
Q Consensus 10 ~~~~~~l~~~~~~lilDGg~gt~L~~~G~~~~~--~lwsa~~ll~~Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~~ 87 (346)
+.|.++|++ ++++||||||||+|+++|++... ++|| +++||+|+++|++|++||||||+|||||+|+.+|..+
T Consensus 3 ~~~~~~l~~-~~ililDGgmGTeL~~~G~~~~~~~~lws----i~~Pe~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~~~ 77 (336)
T PRK07534 3 NALSDLLAE-RGVLLADGATGTNLFNMGLESGEAPELWN----EDHPDNITALHQGFVDAGSDIILTNSFGGTAARLKLH 77 (336)
T ss_pred hHHHHHHhc-CCEEEEECHHHHHHHHCCCCCCCCchHhc----ccCHHHHHHHHHHHHHhcCCEEEecCcccCHHHHHhc
Confidence 468899974 67999999999999999998764 7997 8999999999999999999999999999999999888
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHH
Q 019107 88 GFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLK 167 (346)
Q Consensus 88 g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~ 167 (346)
|. .++++++|++||+|||+|++.+ +++++|||||||+|.++.+ ++. ++++++.
T Consensus 78 ~~-~~~~~~l~~~av~lAr~a~~~~------------------~~~~~VaGsIGP~g~~l~~-------~~~-~~~~e~~ 130 (336)
T PRK07534 78 DA-QDRVHELNRAAAEIAREVADKA------------------GRKVIVAGSVGPTGEIMEP-------MGA-LTHALAV 130 (336)
T ss_pred Cc-HHHHHHHHHHHHHHHHHHHHhc------------------CCccEEEEecCCCccccCC-------CCC-CCHHHHH
Confidence 85 4679999999999999998752 3468999999999997763 332 6889999
Q ss_pred HHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcC-CCceEE
Q 019107 168 EFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSC-EQVVAV 246 (346)
Q Consensus 168 ~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~-~~~~av 246 (346)
++|++|++.|.++|||+|+|||||++.|++++++++++. ++|||+||+++++++|.+|+++.+++..++.. .++++|
T Consensus 131 ~~~~~qi~~l~~~gvD~l~~ET~p~l~E~~a~~~~~~~~--~~Pv~vSft~~~~g~l~~G~~~~~~~~~~~~~~~~~~av 208 (336)
T PRK07534 131 EAFHEQAEGLKAGGADVLWVETISAPEEIRAAAEAAKLA--GMPWCGTMSFDTAGRTMMGLTPADLADLVEKLGEPPLAF 208 (336)
T ss_pred HHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHc--CCeEEEEEEECCCCeeCCCCcHHHHHHHHHhcCCCceEE
Confidence 999999999999999999999999999999999999986 49999999999999999999999999988652 256999
Q ss_pred EECCCC-hhhHHHHHHH-HhhhcCCcEEEeeCCCC-ccccccccccccCCCChHHHHHHHHHHHHcCCeEEeecCCCchH
Q 019107 247 GINCTS-PRFIHGLILS-VRKVTSKPVIIYPNSGE-TYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPN 323 (346)
Q Consensus 247 GvNC~~-p~~~~~~l~~-l~~~~~~pl~vypN~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivGGCCGt~P~ 323 (346)
|+||++ |+.+...+.. +....+.|+++|||+|. .|+.. .+... .+|+.|++++++|++.|++||||||||||+
T Consensus 209 GvNC~~gp~~~~~~l~~~~~~~~~~pl~vyPNaG~p~~~~~--~~~~~--~~p~~~~~~~~~~~~~Ga~iIGGCCGTtP~ 284 (336)
T PRK07534 209 GANCGVGASDLLRTVLGFTAQGPERPIIAKGNAGIPKYVDG--HIHYD--GTPELMAEYAVLARDAGARIIGGCCGTMPE 284 (336)
T ss_pred EecCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCCCcccCCC--ccccC--CCHHHHHHHHHHHHHcCCcEEeeecCCCHH
Confidence 999995 9987555554 44455789999999998 45332 22211 468899999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCccc
Q 019107 324 TIKAISRVLSNKSLPSANL 342 (346)
Q Consensus 324 hI~al~~~~~~~~~~~~~~ 342 (346)
||++|++.++..++++.+.
T Consensus 285 hI~~la~~l~~~~~~~~~~ 303 (336)
T PRK07534 285 HLAAMRAALDARPRGPRPS 303 (336)
T ss_pred HHHHHHHHHccCCCCCCCC
Confidence 9999999999877766553
No 6
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=100.00 E-value=1.4e-74 Score=553.37 Aligned_cols=291 Identities=47% Similarity=0.828 Sum_probs=220.4
Q ss_pred eEEEecchHHHHHHcCCCCCCCccchh-------ccCCChHHHHHHHHHHHHhhcceeeccccccCHHhHHhCCCCHHHH
Q 019107 22 YSVVDGGFATELERHGADLNDPLWSAK-------CLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEA 94 (346)
Q Consensus 22 ~lilDGg~gt~L~~~G~~~~~~lwsa~-------~ll~~Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~~g~~~~~~ 94 (346)
|+||||||||+|+++|.+..+++||+. +++++|++|+++|++|++||||||+|||||+|+.+|.++|++.+.+
T Consensus 1 ililDGgmGT~L~~~g~~~~~~~~s~~~~~~~~~~~~~~p~~v~~iH~~yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~ 80 (305)
T PF02574_consen 1 ILILDGGMGTELERRGLDLNDPLWSALSHPWNELLNIENPELVRQIHRDYLEAGADIITTNTYQASRERLKEYGLSDEEA 80 (305)
T ss_dssp -CTT--EEHHCCHHHHHHHCTSS----TTT-GGTHHHH-HHHHHHHHHHHHHHT-SEEEEC-TT-SHHHHGGGT-GGGCH
T ss_pred CEEeehhhHHHHHhCCcCccccccccccccchHhhhccCHHHHHHHHHHHHHCCCCeEEecCCcCchhhhhhcCCcHHHH
Confidence 579999999999999998888888754 6789999999999999999999999999999999999999987666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 019107 95 EALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRV 174 (346)
Q Consensus 95 ~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i 174 (346)
+++|++||++||+|++.+. .+++++|+|||||||+++. |+||+++|. .++++++++|++|+
T Consensus 81 ~~l~~~av~lA~~a~~~~~----------------~~~~~~VaGsiGP~ga~l~-g~~y~~~~~--~~~~~~~~~~~~q~ 141 (305)
T PF02574_consen 81 EELNRAAVELAREAADEYG----------------SGRKVLVAGSIGPYGAYLS-GSEYPGDYG--LSFEELRDFHREQA 141 (305)
T ss_dssp HHHHHHHHHHHHHHHTT-------------------TT-SEEEEEEE--S---------CTTCT--T-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcc----------------CCCccEEEEEcccccccch-hhhcccccc--ccHHHHHHHHHHHH
Confidence 9999999999999997653 2346999999999999999 999999986 59999999999999
Q ss_pred HHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcC-----CCceEEEEC
Q 019107 175 LILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSC-----EQVVAVGIN 249 (346)
Q Consensus 175 ~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~-----~~~~avGvN 249 (346)
+.|.++|||+|++||||++.|++++++++++.. ++|+||||++.+++++++|+++.+++..++.. .++++||+|
T Consensus 142 ~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~-~~p~~is~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~iGvN 220 (305)
T PF02574_consen 142 EALADAGVDLLLFETMPSLAEAKAALEAIKEVT-GLPVWISFSCKDSGRLRDGTSLEDAVQVIDELLRALPPGPDAIGVN 220 (305)
T ss_dssp HHHHHTT-SEEEEEEEC-CSCHHHHHHHHHHHH-HCCSSEEE-EEEEES-TCTTBCTTSHHHHHHHHHHHCTT-SEEEEE
T ss_pred HHHHhcCCCEEEEecCcHHHHHHHHHHHHHhhh-hhhceeccchhhhccccCCCCHHHHHHHHHHHHHHhhhhhheEEcC
Confidence 999999999999999999999999999999932 49999999999999999999999988888664 589999999
Q ss_pred CCChhhHHHHHHHHhhhc-CCcEEEeeCCCCccccccccccccC-CCChHHHHHHHHHHHHcCCeEEeecCCCchHHHHH
Q 019107 250 CTSPRFIHGLILSVRKVT-SKPVIIYPNSGETYNAELKKWVEST-GVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKA 327 (346)
Q Consensus 250 C~~p~~~~~~l~~l~~~~-~~pl~vypN~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~~ivGGCCGt~P~hI~a 327 (346)
|++|..+...|.++.+.. +.|+++|||+|..++.. ..|.... .+.++ |.+++++|++.|++||||||||||+||++
T Consensus 221 C~~~~~~~~~l~~~~~~~~~~~l~vyPNsG~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~G~~iiGGCCGt~P~hI~a 298 (305)
T PF02574_consen 221 CTSPPEIMKALLELMSATHDIPLIVYPNSGEPYDVG-KVWSETPEDFAPE-WAEFVKEWVEAGARIIGGCCGTTPEHIRA 298 (305)
T ss_dssp SSS-HHHHHHHHHHHHHHT-SEEEEE--SBS-TTSS-GGSTTTTTSHGGG--HHHHHHHHHHHHCEE---TT--HHHHHH
T ss_pred CCCcHHHHhHHHHHHhccCCceEEEecCCCCCcccc-cccccchhhhHHH-HHHHHHHHHHhCCEEEEeCCCCCHHHHHH
Confidence 998877777766666554 89999999999988876 6776532 12222 88899999999999999999999999999
Q ss_pred HHHHHcC
Q 019107 328 ISRVLSN 334 (346)
Q Consensus 328 l~~~~~~ 334 (346)
|++.+++
T Consensus 299 l~~~l~~ 305 (305)
T PF02574_consen 299 LAKALDK 305 (305)
T ss_dssp HHHHTH-
T ss_pred HHHHhcC
Confidence 9999863
No 7
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=100.00 E-value=9e-68 Score=487.96 Aligned_cols=296 Identities=28% Similarity=0.413 Sum_probs=256.1
Q ss_pred hHHHHHhhccCCeEEEecchHHHHHHcCCCCCC----CccchhccCCChHHHHHHHHHHHHhhcceeeccccccCHHhHH
Q 019107 10 SFMTDFLQKCGGYSVVDGGFATELERHGADLND----PLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFE 85 (346)
Q Consensus 10 ~~~~~~l~~~~~~lilDGg~gt~L~~~G~~~~~----~lwsa~~ll~~Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~ 85 (346)
..|.+.++ ++|||+||+|||+|++.|++-.+ .-.+..+++++||.|++||++|++||||||.||||++|+.+++
T Consensus 6 ~~l~~~l~--~rVLv~DGAmGT~lq~~~l~~~df~g~~g~nE~LnlT~Pd~I~~IH~aY~eAGADiIeTNTFgat~i~la 83 (311)
T COG0646 6 TQLREALK--ERVLVLDGAMGTMLQSYGLDEADFRGLKGNNELLNLTKPDVIEAIHRAYIEAGADIIETNTFGATTIKLA 83 (311)
T ss_pred HHHHHHHH--cCEEEeechhhhhHHhcCCcHHhhccccCChHHHhcCCcHHHHHHHHHHHhccCcEEEecCCCcchhhHh
Confidence 45778888 79999999999999999886541 1123456799999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCcEEEEecCCccCCcCCCCCCCCCCCCCCCHHH
Q 019107 86 AKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLET 165 (346)
Q Consensus 86 ~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e 165 (346)
+|+++ +++.+||++|++|||+|++++. + . ++.||+|||||.+.+++. ++++ .+++++
T Consensus 84 dy~le-d~v~~in~~aa~iAR~aA~~~~-~--------------~-k~rfVaGsiGPt~k~~~~----~~~~--~v~fd~ 140 (311)
T COG0646 84 DYGLE-DKVYEINQKAARIARRAADEAG-D--------------P-KPRFVAGSIGPTNKTLSI----SPDF--AVTFDE 140 (311)
T ss_pred hhChH-HHHHHHHHHHHHHHHHHHhhcC-C--------------C-CceEEEEeccCcCCcCCc----CCcc--cccHHH
Confidence 99998 6899999999999999998753 1 2 589999999999865542 2222 489999
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHh----CCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCC
Q 019107 166 LKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEE----GITIPAWFSFNSKDGINVVSGDSILECASIADSCE 241 (346)
Q Consensus 166 ~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~----~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~ 241 (346)
+++.|++|++.|.+.|||+|++||+.++.|+++++.++++. +..+|||+|.|+.+.+++++|.++.++...+++ .
T Consensus 141 l~~ay~eq~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~tl~Gq~~~a~~~~l~~-~ 219 (311)
T COG0646 141 LVEAYREQVEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTLSGQTIEAFLNSLEH-L 219 (311)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEehhccHHHHHHHHHHHHHHHHhcCCcccEEEEEEEecCceecCCCcHHHHHHHhhc-c
Confidence 99999999999999999999999999999999999988774 446999999999999999999999999999987 4
Q ss_pred CceEEEECCC-ChhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcC-CeEEeecCC
Q 019107 242 QVVAVGINCT-SPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAG-ASLFGGCCR 319 (346)
Q Consensus 242 ~~~avGvNC~-~p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~ivGGCCG 319 (346)
++++||+||. +|+.|.+.|+.++...+.++.+|||+|.+-.. .. ......+|++|+++++.|++.| ++|||||||
T Consensus 220 ~~~~vGlNCa~Gp~~m~~~l~~ls~~~~~~vs~~PNAGLP~~~--g~-~~~Y~~~p~~~a~~~~~f~~~g~vnIvGGCCG 296 (311)
T COG0646 220 GPDAVGLNCALGPDEMRPHLRELSRIADAFVSVYPNAGLPNAF--GE-RAVYDLTPEYMAEALAEFAEEGGVNIVGGCCG 296 (311)
T ss_pred CCcEEeeccccCHHHHHHHHHHHHhccCceEEEeCCCCCCccc--CC-ccccCCCHHHHHHHHHHHHHhCCceeeccccC
Confidence 7999999997 89999999999999999999999999963111 11 0012357999999999999887 999999999
Q ss_pred CchHHHHHHHHHHcC
Q 019107 320 TTPNTIKAISRVLSN 334 (346)
Q Consensus 320 t~P~hI~al~~~~~~ 334 (346)
|||+||++|++.++.
T Consensus 297 TTPeHIraia~~v~~ 311 (311)
T COG0646 297 TTPEHIRAIAEAVKG 311 (311)
T ss_pred CCHHHHHHHHHHhcC
Confidence 999999999998863
No 8
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=100.00 E-value=1.4e-66 Score=538.79 Aligned_cols=286 Identities=26% Similarity=0.407 Sum_probs=255.9
Q ss_pred HHHHhhccCCeEEEecchHHHHHHcCCCCCCCccchhccCCChHHHHHHHHHHHHhhcceeeccccccCHHhHHhCCCCH
Q 019107 12 MTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFST 91 (346)
Q Consensus 12 ~~~~l~~~~~~lilDGg~gt~L~~~G~~~~~~lwsa~~ll~~Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~~g~~~ 91 (346)
|.+.|+ ++++||||||||+|+++|++++.++ +.+++++||.|+++|++|++||||||+|||||+|+.+|.++|++
T Consensus 4 ~~~~l~--~~~lilDGgmGT~L~~~G~~~~~~~--~~~~l~~Pe~i~~vH~~yl~AGAdvi~TnTy~as~~~l~~~g~~- 78 (612)
T PRK08645 4 LLERLK--ERVLIADGAMGTLLYSRGVPLDRCF--EELNLSHPELILRIHREYIEAGADVIQTNTFGANRIKLKRYGLE- 78 (612)
T ss_pred HHHHhc--CCeEEEECHHHHHHHHcCCCCCCCh--HHhhccCHHHHHHHHHHHHHhCCCEEecCcccccHHHHHhcCch-
Confidence 677887 7899999999999999999876542 67889999999999999999999999999999999999999997
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHH
Q 019107 92 EEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHR 171 (346)
Q Consensus 92 ~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~ 171 (346)
+++++++++||+|||+|++ ++++|||||||||. | ++|++ +++++++++|+
T Consensus 79 ~~~~~l~~~av~lAr~a~~---------------------~~~~VagsiGP~g~-------~-~~~~~-~~~~~~~~~~~ 128 (612)
T PRK08645 79 DKVKEINRAAVRLAREAAG---------------------DDVYVAGTIGPIGG-------R-GPLGD-ISLEEIRREFR 128 (612)
T ss_pred HHHHHHHHHHHHHHHHHhc---------------------CCCeEEEeCCCCCC-------C-CCCCC-CCHHHHHHHHH
Confidence 6799999999999999974 25899999999997 4 56665 78999999999
Q ss_pred HHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCC
Q 019107 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT 251 (346)
Q Consensus 172 ~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~ 251 (346)
+|++.|.++|||+|++||||++.|++++++++++.+ ++|+|+||+++++++|++|+++.+++..+.. .++++||+||+
T Consensus 129 ~~~~~l~~~gvD~l~~ET~~~~~Ea~a~~~a~~~~~-~~p~~~Sf~~~~~g~l~~G~~~~~~~~~~~~-~~~~avGiNC~ 206 (612)
T PRK08645 129 EQIDALLEEGVDGLLLETFYDLEELLLALEAAREKT-DLPIIAQVAFHEDGVTQNGTSLEEALKELVA-AGADVVGLNCG 206 (612)
T ss_pred HHHHHHHhcCCCEEEEEccCCHHHHHHHHHHHHHhC-CCcEEEEEEECCCCeeCCCCCHHHHHHHHHh-CCCCEEEecCC
Confidence 999999999999999999999999999999999875 5999999999999999999999999999876 46999999999
Q ss_pred C-hhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeEEeecCCCchHHHHHHHH
Q 019107 252 S-PRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISR 330 (346)
Q Consensus 252 ~-p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivGGCCGt~P~hI~al~~ 330 (346)
+ |+.+.++|+.+...+++|+++|||+|.........|.. .+|+.|++++++|++.|++||||||||||+||++|++
T Consensus 207 ~~p~~~~~~l~~l~~~~~~pl~vypNaG~~~~~~~~~~~~---~~p~~~~~~~~~~~~~Ga~iiGGCCgt~P~hI~~la~ 283 (612)
T PRK08645 207 LGPYHMLEALERIPIPENAPLSAYPNAGLPEYVDGRYVYS---ANPEYFAEYALEFVEQGVRLIGGCCGTTPEHIRAMAR 283 (612)
T ss_pred CCHHHHHHHHHHHHhccCceEEEEECCCCCCCCCCccccC---CCHHHHHHHHHHHHHhCCCEEeEecCCCHHHHHHHHH
Confidence 5 99999999999776688999999999853221222222 3689999999999999999999999999999999999
Q ss_pred HHcCCCC
Q 019107 331 VLSNKSL 337 (346)
Q Consensus 331 ~~~~~~~ 337 (346)
.++...+
T Consensus 284 ~l~~~~~ 290 (612)
T PRK08645 284 ALKGLKP 290 (612)
T ss_pred HhccCCC
Confidence 9987665
No 9
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=100.00 E-value=1.8e-66 Score=561.55 Aligned_cols=304 Identities=24% Similarity=0.398 Sum_probs=267.7
Q ss_pred HHHHHhhccCCeEEEecchHHHHHHcCCCCC---C---Cccc-------hhccCCChHHHHHHHHHHHHhhcceeecccc
Q 019107 11 FMTDFLQKCGGYSVVDGGFATELERHGADLN---D---PLWS-------AKCLVSSPHLVRKVHLDYLDAGANIIITASY 77 (346)
Q Consensus 11 ~~~~~l~~~~~~lilDGg~gt~L~~~G~~~~---~---~lws-------a~~ll~~Pe~V~~iH~~yl~AGA~iI~TnTy 77 (346)
.|.++|+ ++++||||||||+|+++|++.. + ++|+ ..+++++||+|++||++|++||||||+||||
T Consensus 10 ~l~~~L~--~riLIlDGAMGT~Lq~~gl~~~d~~g~~~~~ws~~l~~~~e~l~lt~Pe~I~~IH~~Yl~AGADII~TNTF 87 (1229)
T PRK09490 10 QLRALLA--ERILVLDGAMGTMIQRYKLEEADYRGERFADWPCDLKGNNDLLVLTQPDVIEAIHRAYLEAGADIIETNTF 87 (1229)
T ss_pred HHHHHHc--CCeEEEECcchHHHHHcCCChhhccccccccccccccCCchhhhcCCHHHHHHHHHHHHHHhCceeecCCC
Confidence 5889998 7899999999999999998532 2 5565 4778999999999999999999999999999
Q ss_pred ccCHHhHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCcEEEEecCCccCC--cCCCCCCCC
Q 019107 78 QATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAY--LADGSEYSG 155 (346)
Q Consensus 78 ~as~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~--l~~g~eY~g 155 (346)
++|+.+|.++|++ ++++++|++|++|||+|++.+..++ .+++++|||||||+|.+ +++++||+|
T Consensus 88 ~a~~~~L~~ygl~-~~~~eln~~av~LAreAa~~~~~~~-------------~~~~~~VAGSIGP~g~~~sl~p~~e~pg 153 (1229)
T PRK09490 88 NATTIAQADYGME-SLVYELNFAAARLAREAADEWTAKT-------------PDKPRFVAGVLGPTNRTASISPDVNDPG 153 (1229)
T ss_pred CCCHHHHhhCChH-HHHHHHHHHHHHHHHHHHHHhhhcc-------------CCCceEEEEecCCCCcccccCCCccccc
Confidence 9999999999997 6799999999999999998763221 23578999999999964 568999988
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHh----CCCCcEEEEEEEcC-CCcccCCCCH
Q 019107 156 DYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEE----GITIPAWFSFNSKD-GINVVSGDSI 230 (346)
Q Consensus 156 ~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~----~~~~pv~is~~~~~-~~~l~~G~~~ 230 (346)
|+. +++++++++|++|++.|.++|||+|++|||+++.|+++++.++++. +.++|||+||++.+ ++++++|+++
T Consensus 154 -~~~-it~del~~~y~eQi~~L~e~GVDllliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~T~~d~~Gr~lsG~~~ 231 (1229)
T PRK09490 154 -FRN-VTFDELVAAYREQTRGLIEGGADLILIETIFDTLNAKAAIFAVEEVFEELGVRLPVMISGTITDASGRTLSGQTT 231 (1229)
T ss_pred -ccC-CCHHHHHHHHHHHHHHHHhCCCCEEEEeeeCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCccCCCCcH
Confidence 554 8999999999999999999999999999999999999999998874 44699999999965 7899999999
Q ss_pred HHHHHHhhcCCCceEEEECCC-ChhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHc
Q 019107 231 LECASIADSCEQVVAVGINCT-SPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDA 309 (346)
Q Consensus 231 ~~av~~~~~~~~~~avGvNC~-~p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (346)
..++..+.. .++++||+||+ +|+.|.++|+.+.+.++.|+++|||+|.+... ..| ..+|++|++++++|++.
T Consensus 232 ea~~~~l~~-~~~~avGlNCs~GP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~--~~y----d~tPe~~a~~~~~~~~~ 304 (1229)
T PRK09490 232 EAFWNSLRH-AKPLSIGLNCALGADELRPYVEELSRIADTYVSAHPNAGLPNAF--GEY----DETPEEMAAQIGEFAES 304 (1229)
T ss_pred HHHHHHHhc-CCCCEEEEcCCCcHHHHHHHHHHHHHhcCCeEEEEeCCCCCCCC--CCC----CCCHHHHHHHHHHHHHc
Confidence 999988865 58999999999 69999999999998889999999999975321 123 24699999999999999
Q ss_pred C-CeEEeecCCCchHHHHHHHHHHcCCCCCC
Q 019107 310 G-ASLFGGCCRTTPNTIKAISRVLSNKSLPS 339 (346)
Q Consensus 310 G-~~ivGGCCGt~P~hI~al~~~~~~~~~~~ 339 (346)
| ++||||||||||+||++|++.++...|+.
T Consensus 305 G~v~IIGGCCGTtPeHI~ala~~l~~~~p~~ 335 (1229)
T PRK09490 305 GFLNIVGGCCGTTPEHIAAIAEAVAGLPPRK 335 (1229)
T ss_pred CCCCEEEecCCCCHHHHHHHHHHHhcCCCCC
Confidence 9 99999999999999999999998776643
No 10
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=100.00 E-value=1.1e-64 Score=549.05 Aligned_cols=296 Identities=22% Similarity=0.329 Sum_probs=262.2
Q ss_pred CCeEEEecchHHHHHHcCCCCCCCccc------------hhccCCChHHHHHHHHHHHHhhcceeeccccccCHHhHHhC
Q 019107 20 GGYSVVDGGFATELERHGADLNDPLWS------------AKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAK 87 (346)
Q Consensus 20 ~~~lilDGg~gt~L~~~G~~~~~~lws------------a~~ll~~Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~~ 87 (346)
++++||||||||+|+++|++..+++|+ +.+++++||+|++||++|++||||||+||||++|+.+|.++
T Consensus 3 ~rilvlDGamGT~Lq~~gl~~~d~~g~~~~~~~~~~~~~e~l~lt~Pe~I~~IH~~Yl~AGAdII~TNTF~a~~~~L~~y 82 (1178)
T TIGR02082 3 QRILVLDGAMGTQLQSANLTEADFRGAEFTCHRELKGNNDILNLTKPEVIATIHRAYFEAGADIIETNTFNSTTISQADY 82 (1178)
T ss_pred CceEEEEChhHHHHHhCCCCccccCcccccccccccCCcHHhhcCCHHHHHHHHHHHHHHhchheecCCccCCHHHHhhC
Confidence 689999999999999999998888995 78899999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCcEEEEecCCccCCc--CCCCCCCCCCCCCCCHHH
Q 019107 88 GFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYL--ADGSEYSGDYGDAVSLET 165 (346)
Q Consensus 88 g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l--~~g~eY~g~~~~~~~~~e 165 (346)
|++ ++++++|++|++|||+|++.+... .+++++|||||||+|.++ .++.+|.+ |+. +++++
T Consensus 83 g~~-~~~~eln~~av~lAr~Aa~~~~~~--------------~~~~~~VAGsIGP~g~~~~lgp~~~~~~-~~~-~t~de 145 (1178)
T TIGR02082 83 DLE-DLIYDLNFKGAKLARAVADEFTLT--------------PEKPRFVAGSMGPTNKTATLSPDVERPG-FRN-VTYDE 145 (1178)
T ss_pred CHH-HHHHHHHHHHHHHHHHHHHhhccc--------------CCCceEEEEEeCCCCCCccCCCccccCc-cCC-CCHHH
Confidence 997 679999999999999999876321 234689999999999754 45566655 765 89999
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHh----CCCCcEEEEEE-EcCCCcccCCCCHHHHHHHhhcC
Q 019107 166 LKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEE----GITIPAWFSFN-SKDGINVVSGDSILECASIADSC 240 (346)
Q Consensus 166 ~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~----~~~~pv~is~~-~~~~~~l~~G~~~~~av~~~~~~ 240 (346)
++++|++|++.|.++|||+|++|||+++.|+++++.++++. +.++|||+|++ +++++++++|+++.+++..+..
T Consensus 146 l~~~y~eq~~~L~~~GvD~iliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~~~~d~~Gr~~~G~~~~~~~~~l~~- 224 (1178)
T TIGR02082 146 LVDAYTEQAKGLLDGGVDLLLIETCFDTLNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLSGQTIEAFLTSLEH- 224 (1178)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCeeCCCCcHHHHHHHHhc-
Confidence 99999999999999999999999999999999999999873 34699999955 5678999999999999998865
Q ss_pred CCceEEEECCC-ChhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHc-CCeEEeecC
Q 019107 241 EQVVAVGINCT-SPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDA-GASLFGGCC 318 (346)
Q Consensus 241 ~~~~avGvNC~-~p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~ivGGCC 318 (346)
.++++||+||+ +|+.|.++++.+.+.++.|+++|||+|.++.. ..|. .+|++|++++++|++. |++||||||
T Consensus 225 ~~~~avGlNCs~gP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~--~~yd----~~p~~~a~~~~~~~~~ggv~IIGGCC 298 (1178)
T TIGR02082 225 AGIDMIGLNCALGPDEMRPHLKHLSEHAEAYVSCHPNAGLPNAF--GEYD----LTPDELAKALADFAAEGGLNIVGGCC 298 (1178)
T ss_pred CCCCEEEeCCCCCHHHHHHHHHHHHHhcCceEEEEeCCCCCCCC--Cccc----CCHHHHHHHHHHHHHhCCCcEEEecC
Confidence 68999999999 79999999999999989999999999976432 2232 4689999999999987 699999999
Q ss_pred CCchHHHHHHHHHHcCCCCCC
Q 019107 319 RTTPNTIKAISRVLSNKSLPS 339 (346)
Q Consensus 319 Gt~P~hI~al~~~~~~~~~~~ 339 (346)
||||+||++|++.++...|+.
T Consensus 299 GTtPeHI~ala~~l~~~~p~~ 319 (1178)
T TIGR02082 299 GTTPDHIRAIAEAVKNIKPRQ 319 (1178)
T ss_pred CCCHHHHHHHHHHhhcCCCCC
Confidence 999999999999998776644
No 11
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=96.99 E-value=0.048 Score=51.85 Aligned_cols=156 Identities=21% Similarity=0.251 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEccCCC------------------HHHHHHHHHHHHHhCCCCcEEEEEEEcCCCc
Q 019107 162 SLETLKEFHRRRVLILANSGADLIAFETIPN------------------KLEAKAYAELLEEEGITIPAWFSFNSKDGIN 223 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~------------------~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~ 223 (346)
.++.+.+.|+. ..++|+|+|-=.||.. .+-++.+.+++++.+..+|.+|.=++-+..+
T Consensus 51 ~Pd~I~~IH~a----Y~eAGADiIeTNTFgat~i~lady~led~v~~in~~aa~iAR~aA~~~~~~k~rfVaGsiGPt~k 126 (311)
T COG0646 51 KPDVIEAIHRA----YIEAGADIIETNTFGATTIKLADYGLEDKVYEINQKAARIARRAADEAGDPKPRFVAGSIGPTNK 126 (311)
T ss_pred CcHHHHHHHHH----HHhccCcEEEecCCCcchhhHhhhChHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEeccCcCC
Confidence 56778888875 5569999997777762 1123333344444332268998888866665
Q ss_pred c--cCC---CCHHHHHHHhhc------CCCceEEEECCC-ChhhHHHHHHHHhhhcC-----CcEEEeeC---CCCcccc
Q 019107 224 V--VSG---DSILECASIADS------CEQVVAVGINCT-SPRFIHGLILSVRKVTS-----KPVIIYPN---SGETYNA 283 (346)
Q Consensus 224 l--~~G---~~~~~av~~~~~------~~~~~avGvNC~-~p~~~~~~l~~l~~~~~-----~pl~vypN---~g~~~~~ 283 (346)
+ .+| .+++++++.... ..+++++.|--. ....+..++..++++.+ .|+++.-- +|..
T Consensus 127 ~~~~~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~t--- 203 (311)
T COG0646 127 TLSISPDFAVTFDELVEAYREQVEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGTITDSGRT--- 203 (311)
T ss_pred cCCcCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEehhccHHHHHHHHHHHHHHHHhcCCcccEEEEEEEecCcee---
Confidence 2 244 567766554321 258999999986 67888888888877754 88876421 2221
Q ss_pred ccccccccCCCChHHHHHHHHHHHHcCCeEEeecCCCchHHHHHHHHHHcC
Q 019107 284 ELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSN 334 (346)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivGGCCGt~P~hI~al~~~~~~ 334 (346)
-.+.++++|.. .....|+.+||==|+++|++++..-+.+..
T Consensus 204 -------l~Gq~~~a~~~---~l~~~~~~~vGlNCa~Gp~~m~~~l~~ls~ 244 (311)
T COG0646 204 -------LSGQTIEAFLN---SLEHLGPDAVGLNCALGPDEMRPHLRELSR 244 (311)
T ss_pred -------cCCCcHHHHHH---HhhccCCcEEeeccccCHHHHHHHHHHHHh
Confidence 11234555544 356678999999999999888766565554
No 12
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=95.68 E-value=1.2 Score=38.96 Aligned_cols=137 Identities=9% Similarity=0.049 Sum_probs=79.3
Q ss_pred HHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHH-HhCC-CCcEEEEEEEcCCCcccCCCCHHHHHHHh---hcCCCce
Q 019107 170 HRRRVLILANSGADLIAFETIPNKLEAKAYAELLE-EEGI-TIPAWFSFNSKDGINVVSGDSILECASIA---DSCEQVV 244 (346)
Q Consensus 170 ~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~-~~~~-~~pv~is~~~~~~~~l~~G~~~~~av~~~---~~~~~~~ 244 (346)
.++.++.+.+.|+|.|.+-- .+++.++ ..+. +.|+++.+...... ....++++.+ .+ .+++
T Consensus 15 ~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~~~~~~~~v~~~v~~~~~~-----~~~~~~~~~a~~a~~-~Gad 80 (201)
T cd00945 15 IAKLCDEAIEYGFAAVCVNP--------GYVRLAADALAGSDVPVIVVVGFPTGL-----TTTEVKVAEVEEAID-LGAD 80 (201)
T ss_pred HHHHHHHHHHhCCcEEEECH--------HHHHHHHHHhCCCCCeEEEEecCCCCC-----CcHHHHHHHHHHHHH-cCCC
Confidence 34467777779999986553 2333332 2332 47888777432211 1234444433 33 4788
Q ss_pred EEEECCCC-------hhhHHHHHHHHhhh--cCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeEEe
Q 019107 245 AVGINCTS-------PRFIHGLILSVRKV--TSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFG 315 (346)
Q Consensus 245 avGvNC~~-------p~~~~~~l~~l~~~--~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivG 315 (346)
++.+-+.. ++.+...++.+.+. .+.|+++|.+-+.. .+++...+.++...+.|+..|=
T Consensus 81 ~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~-------------~~~~~~~~~~~~~~~~g~~~iK 147 (201)
T cd00945 81 EIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL-------------KTADEIAKAARIAAEAGADFIK 147 (201)
T ss_pred EEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC-------------CCHHHHHHHHHHHHHhCCCEEE
Confidence 88886642 24445556666665 37899998765421 2356666665555667777765
Q ss_pred ecCC-----CchHHHHHHHHHHc
Q 019107 316 GCCR-----TTPNTIKAISRVLS 333 (346)
Q Consensus 316 GCCG-----t~P~hI~al~~~~~ 333 (346)
=..| .+.++++++++.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~i~~~~~ 170 (201)
T cd00945 148 TSTGFGGGGATVEDVKLMKEAVG 170 (201)
T ss_pred eCCCCCCCCCCHHHHHHHHHhcc
Confidence 4444 36778877776653
No 13
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=95.67 E-value=0.45 Score=44.86 Aligned_cols=112 Identities=18% Similarity=0.267 Sum_probs=67.1
Q ss_pred CcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcE
Q 019107 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPA 212 (346)
Q Consensus 133 ~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv 212 (346)
+.+|..++ |+++ |. +.++... ...+.+.++|+|.+=+|-- .|....++++.+.+ .||
T Consensus 76 ~~~vv~Dm-Pf~s-----------y~---~~e~a~~---na~rl~~eaGa~aVkiEgg---~~~~~~i~~l~~~g--IpV 132 (263)
T TIGR00222 76 NCLIVTDL-PFMS-----------YA---TPEQALK---NAARVMQETGANAVKLEGG---EWLVETVQMLTERG--VPV 132 (263)
T ss_pred CceEEeCC-CcCC-----------CC---CHHHHHH---HHHHHHHHhCCeEEEEcCc---HhHHHHHHHHHHCC--CCE
Confidence 56888877 4442 32 2344433 3445556699999999974 45555667777765 999
Q ss_pred E-------EEEEEcCCCcccCCCCHHHHHHHhh-----cCCCceEEEECCCChhhHHHHHHHHhhhcCCcEE
Q 019107 213 W-------FSFNSKDGINVVSGDSILECASIAD-----SCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVI 272 (346)
Q Consensus 213 ~-------is~~~~~~~~l~~G~~~~~av~~~~-----~~~~~~avGvNC~~p~~~~~~l~~l~~~~~~pl~ 272 (346)
+ .+.... .+...-|.+-+++.+.++ ...+++++=+-|...+ +.+.+.+..+.|++
T Consensus 133 ~gHiGltPq~a~~~-ggy~~qgrt~~~a~~~i~~A~a~e~AGA~~ivlE~vp~~----~a~~It~~l~iP~i 199 (263)
T TIGR00222 133 VGHLGLTPQSVNIL-GGYKVQGKDEEAAKKLLEDALALEEAGAQLLVLECVPVE----LAAKITEALAIPVI 199 (263)
T ss_pred EEecCCCceeEeec-CCeeecCCCHHHHHHHHHHHHHHHHcCCCEEEEcCCcHH----HHHHHHHhCCCCEE
Confidence 9 444332 223333665444333332 1368999999999854 44444545578854
No 14
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=95.45 E-value=1.2 Score=42.68 Aligned_cols=104 Identities=15% Similarity=0.076 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEE-ccC-----CCHHHHHHHHHHHHH-hCCCCcEEEEEEEcCCCcccCCCCHHHH
Q 019107 161 VSLETLKEFHRRRVLILANSGADLIAF-ETI-----PNKLEAKAYAELLEE-EGITIPAWFSFNSKDGINVVSGDSILEC 233 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~~gvD~i~~-ET~-----~~~~E~~a~~~a~~~-~~~~~pv~is~~~~~~~~l~~G~~~~~a 233 (346)
++.+.+++ +++.+.+.|||.|++ -|. -+.+|=+.+++.+.+ ...+.||++.+. + +..++
T Consensus 25 iD~~~l~~----li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~---------~-~t~~~ 90 (303)
T PRK03620 25 FDEAAYRE----HLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG---------G-GTAQA 90 (303)
T ss_pred cCHHHHHH----HHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC---------C-CHHHH
Confidence 67766544 777888899999864 332 256677777776544 344689998772 2 44566
Q ss_pred HHHhhc--CCCceEEEECCC-----ChhhHHHHHHHHhhhcCCcEEEeeCCC
Q 019107 234 ASIADS--CEQVVAVGINCT-----SPRFIHGLILSVRKVTSKPVIIYPNSG 278 (346)
Q Consensus 234 v~~~~~--~~~~~avGvNC~-----~p~~~~~~l~~l~~~~~~pl~vypN~g 278 (346)
++.++. ..+++++.+--- +.+.+....+.+.+.++.|+++|-+.|
T Consensus 91 i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~g 142 (303)
T PRK03620 91 IEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRDN 142 (303)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 655432 257888877442 134566667777777889999996543
No 15
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=94.96 E-value=0.83 Score=43.14 Aligned_cols=99 Identities=20% Similarity=0.180 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCC------CcccCCCC---HHH
Q 019107 162 SLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDG------INVVSGDS---ILE 232 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~------~~l~~G~~---~~~ 232 (346)
+.++..+ ..++.+.++|++.+-+|-- .|....++++.+.+ .||+-.+-+.+. +...-|.+ ..+
T Consensus 91 ~~~~av~---~a~r~~~~aGa~aVkiEdg---~~~~~~I~al~~ag--IpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~ 162 (264)
T PRK00311 91 SPEQALR---NAGRLMKEAGAHAVKLEGG---EEVAETIKRLVERG--IPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEK 162 (264)
T ss_pred CHHHHHH---HHHHHHHHhCCeEEEEcCc---HHHHHHHHHHHHCC--CCEeeeecccceeecccCCeeeecCCHHHHHH
Confidence 5555433 3344555699999999975 46666677777765 999855543322 22223443 334
Q ss_pred HHHHhh--cCCCceEEEECCCChhhHHHHHHHHhhhcCCcEE
Q 019107 233 CASIAD--SCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVI 272 (346)
Q Consensus 233 av~~~~--~~~~~~avGvNC~~p~~~~~~l~~l~~~~~~pl~ 272 (346)
+++.+. ...|++++=+-|...+ +.+.+.+..+.|++
T Consensus 163 ~i~ra~a~~eAGA~~i~lE~v~~~----~~~~i~~~l~iP~i 200 (264)
T PRK00311 163 LLEDAKALEEAGAFALVLECVPAE----LAKEITEALSIPTI 200 (264)
T ss_pred HHHHHHHHHHCCCCEEEEcCCCHH----HHHHHHHhCCCCEE
Confidence 444332 1258999999999543 44555555678864
No 16
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=94.93 E-value=1.3 Score=50.28 Aligned_cols=157 Identities=19% Similarity=0.221 Sum_probs=98.6
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEccCCC---------H----HHHH-HHHHHHHH----hC--CCCcEEEEEEEcCC
Q 019107 162 SLETLKEFHRRRVLILANSGADLIAFETIPN---------K----LEAK-AYAELLEE----EG--ITIPAWFSFNSKDG 221 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~---------~----~E~~-a~~~a~~~----~~--~~~pv~is~~~~~~ 221 (346)
.++-+.+.|+. ++++|+|+|.--|+.. + .|+- .+++++++ +. .+.|++|.-++-+.
T Consensus 48 ~Pe~I~~IH~~----Yl~AGAdII~TNTF~a~~~~L~~yg~~~~~~eln~~av~lAr~Aa~~~~~~~~~~~~VAGsIGP~ 123 (1178)
T TIGR02082 48 KPEVIATIHRA----YFEAGADIIETNTFNSTTISQADYDLEDLIYDLNFKGAKLARAVADEFTLTPEKPRFVAGSMGPT 123 (1178)
T ss_pred CHHHHHHHHHH----HHHHhchheecCCccCCHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEEeCCC
Confidence 56778888875 5559999887667642 1 1111 23333333 21 13688999888777
Q ss_pred Cccc-CC----------CCHHHHHHHhh------cCCCceEEEECCC-ChhhHHHHHHHHhhh-----cCCcEEEe---e
Q 019107 222 INVV-SG----------DSILECASIAD------SCEQVVAVGINCT-SPRFIHGLILSVRKV-----TSKPVIIY---P 275 (346)
Q Consensus 222 ~~l~-~G----------~~~~~av~~~~------~~~~~~avGvNC~-~p~~~~~~l~~l~~~-----~~~pl~vy---p 275 (346)
+.+. .| .++.++..... ...++|.+.+.-. ....+..++..+++. .+.|+++. .
T Consensus 124 g~~~~lgp~~~~~~~~~~t~del~~~y~eq~~~L~~~GvD~iliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~~~~ 203 (1178)
T TIGR02082 124 NKTATLSPDVERPGFRNVTYDELVDAYTEQAKGLLDGGVDLLLIETCFDTLNAKAALFAAETVFEEKGRELPIMISGTIV 203 (1178)
T ss_pred CCCccCCCccccCccCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEE
Confidence 6532 22 46666554321 1257999999865 566677777766653 46887775 2
Q ss_pred -CCCCccccccccccccCCCChHHHHHHHHHHHHcCCeEEeecCCCchHHHHHHHHHHcCC
Q 019107 276 -NSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSNK 335 (346)
Q Consensus 276 -N~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivGGCCGt~P~hI~al~~~~~~~ 335 (346)
..|... .+.+.+.+...+ ...|+..||=-|+++|+++..+-+.+...
T Consensus 204 d~~Gr~~----------~G~~~~~~~~~l---~~~~~~avGlNCs~gP~~m~~~l~~l~~~ 251 (1178)
T TIGR02082 204 DTSGRTL----------SGQTIEAFLTSL---EHAGIDMIGLNCALGPDEMRPHLKHLSEH 251 (1178)
T ss_pred CCCCeeC----------CCCcHHHHHHHH---hcCCCCEEEeCCCCCHHHHHHHHHHHHHh
Confidence 122211 123456666554 35789999999999999998887777654
No 17
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=94.92 E-value=1.1 Score=42.18 Aligned_cols=113 Identities=22% Similarity=0.270 Sum_probs=69.8
Q ss_pred cEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEE
Q 019107 134 VLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAW 213 (346)
Q Consensus 134 ~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~ 213 (346)
.+|...+ |||. |.. +.++..+ .-++.+.++|++.+-+|-- .|....++++.+.+ .||+
T Consensus 74 p~viaD~-~fg~-----------y~~--~~~~av~---~a~r~~~~aGa~aVkiEd~---~~~~~~I~al~~ag--ipV~ 131 (254)
T cd06557 74 ALVVADM-PFGS-----------YQT--SPEQALR---NAARLMKEAGADAVKLEGG---AEVAETIRALVDAG--IPVM 131 (254)
T ss_pred CeEEEeC-CCCc-----------ccC--CHHHHHH---HHHHHHHHhCCeEEEEcCc---HHHHHHHHHHHHcC--CCee
Confidence 4455777 7764 322 4566544 2344455599999999975 47777788888866 9999
Q ss_pred EEEEEcCCC------cccCCCC---HHHHHHHhhc--CCCceEEEECCCChhhHHHHHHHHhhhcCCcEE
Q 019107 214 FSFNSKDGI------NVVSGDS---ILECASIADS--CEQVVAVGINCTSPRFIHGLILSVRKVTSKPVI 272 (346)
Q Consensus 214 is~~~~~~~------~l~~G~~---~~~av~~~~~--~~~~~avGvNC~~p~~~~~~l~~l~~~~~~pl~ 272 (346)
-.+-+.+.. ...-|.+ ..++++.+.. ..|++++=+-|... .+++.+.+..+.|++
T Consensus 132 gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v~~----~~~~~i~~~v~iP~i 197 (254)
T cd06557 132 GHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLECVPA----ELAKEITEALSIPTI 197 (254)
T ss_pred ccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCCCH----HHHHHHHHhCCCCEE
Confidence 665543322 1222333 3444443321 25899999999953 355555655678854
No 18
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=94.82 E-value=0.39 Score=45.42 Aligned_cols=85 Identities=20% Similarity=0.226 Sum_probs=57.1
Q ss_pred CCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCCh------------hhHHHHHHHHhhhcCCcEEEeeC
Q 019107 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSP------------RFIHGLILSVRKVTSKPVIIYPN 276 (346)
Q Consensus 209 ~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~p------------~~~~~~l~~l~~~~~~pl~vypN 276 (346)
+.|+++|+... +-+.+.++++.+.. .++++|-+||+.| +.+..+++.+++..+.|+++.-+
T Consensus 98 ~~pvi~si~g~------~~~~~~~~a~~~~~-~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~ 170 (289)
T cd02810 98 GQPLIASVGGS------SKEDYVELARKIER-AGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLS 170 (289)
T ss_pred CCeEEEEeccC------CHHHHHHHHHHHHH-hCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeC
Confidence 58999998432 11234555666654 3789999998754 35667788888777889988755
Q ss_pred CCCccccccccccccCCCChHHHHHHHHHHHHcCCeEEe
Q 019107 277 SGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFG 315 (346)
Q Consensus 277 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivG 315 (346)
.+ .+++++.+.++...+.|+..|-
T Consensus 171 ~~---------------~~~~~~~~~a~~l~~~Gad~i~ 194 (289)
T cd02810 171 PY---------------FDLEDIVELAKAAERAGADGLT 194 (289)
T ss_pred CC---------------CCHHHHHHHHHHHHHcCCCEEE
Confidence 42 2356677777777777766543
No 19
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=94.67 E-value=0.7 Score=44.08 Aligned_cols=83 Identities=20% Similarity=0.208 Sum_probs=52.1
Q ss_pred CCcEEEEEEEcCCCcccCCCCHHHHHHHhhcC-CCceEEEECCCCh-------------hhHHHHHHHHhhhcCCcEEEe
Q 019107 209 TIPAWFSFNSKDGINVVSGDSILECASIADSC-EQVVAVGINCTSP-------------RFIHGLILSVRKVTSKPVIIY 274 (346)
Q Consensus 209 ~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~-~~~~avGvNC~~p-------------~~~~~~l~~l~~~~~~pl~vy 274 (346)
+.|+++++.-. +-+.+.++++.+... ..+++|=+||+.| +.+..+++.+++..+.|+.+.
T Consensus 90 ~~pl~~qi~g~------~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vK 163 (300)
T TIGR01037 90 PTPLIASVYGS------SVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAK 163 (300)
T ss_pred CCcEEEEeecC------CHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 36999999421 112344555555432 2489999999744 456777888887777898887
Q ss_pred eCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeEE
Q 019107 275 PNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLF 314 (346)
Q Consensus 275 pN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iv 314 (346)
-+. +.++..+.++.+.+.|+..|
T Consensus 164 i~~-----------------~~~~~~~~a~~l~~~G~d~i 186 (300)
T TIGR01037 164 LSP-----------------NVTDITEIAKAAEEAGADGL 186 (300)
T ss_pred CCC-----------------ChhhHHHHHHHHHHcCCCEE
Confidence 432 12345566666667776554
No 20
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=94.63 E-value=0.6 Score=42.40 Aligned_cols=90 Identities=22% Similarity=0.315 Sum_probs=56.0
Q ss_pred CCCEEEEccCCCHHHHHHH----HHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCC----
Q 019107 181 GADLIAFETIPNKLEAKAY----AELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTS---- 252 (346)
Q Consensus 181 gvD~i~~ET~~~~~E~~a~----~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~---- 252 (346)
|+|+++=|.+..-. +..- .........+.|+++++... +-+.+.++++.+.+ .+.++|-+||.+
T Consensus 23 ~~~~~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~qi~g~------~~~~~~~aa~~~~~-aG~d~ieln~g~p~~~ 94 (231)
T cd02801 23 GADLVYTEMISAKA-LLRGNRKRLRLLTRNPEERPLIVQLGGS------DPETLAEAAKIVEE-LGADGIDLNMGCPSPK 94 (231)
T ss_pred CCCEEEecCEEEhh-hhhcCHHHHHhhccCccCCCEEEEEcCC------CHHHHHHHHHHHHh-cCCCEEEEeCCCCHHH
Confidence 48999877554321 1111 12222233468999999532 22345566666654 489999999865
Q ss_pred -------------hhhHHHHHHHHhhhcCCcEEEeeCCC
Q 019107 253 -------------PRFIHGLILSVRKVTSKPVIIYPNSG 278 (346)
Q Consensus 253 -------------p~~~~~~l~~l~~~~~~pl~vypN~g 278 (346)
|+.+..+++.+++....|+.+.-+.|
T Consensus 95 ~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~ 133 (231)
T cd02801 95 VTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLG 133 (231)
T ss_pred HhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeec
Confidence 34566778888776667888876654
No 21
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=94.54 E-value=4.8 Score=38.84 Aligned_cols=225 Identities=19% Similarity=0.183 Sum_probs=133.6
Q ss_pred hHHHHHHHHHHHHhhcceeeccccccCHHhHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCC
Q 019107 54 PHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRP 133 (346)
Q Consensus 54 Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (346)
.+.+.+.-++-++.|-.-|.. |.....+ ...|-+...-.-++.+|++..|+.. + .
T Consensus 60 id~l~~~~~~~~~~Gi~~v~l--Fgv~~~K-d~~gs~A~~~~g~v~~air~iK~~~--------------------p--d 114 (322)
T PRK13384 60 ESALADEIERLYALGIRYVMP--FGISHHK-DAKGSDTWDDNGLLARMVRTIKAAV--------------------P--E 114 (322)
T ss_pred HHHHHHHHHHHHHcCCCEEEE--eCCCCCC-CCCcccccCCCChHHHHHHHHHHHC--------------------C--C
Confidence 466777778889999986654 3332110 1112111112357778887766553 1 2
Q ss_pred cEEEE--ecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCc
Q 019107 134 VLVAA--SVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIP 211 (346)
Q Consensus 134 ~~VaG--siGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~p 211 (346)
.+|.. |+-||-+.=++|--..| .++-++-.+...+|+-.+.++|+|++.==.|.+- .+.++.+++.+.|..--
T Consensus 115 l~vi~DVcLc~YT~hGHcGil~~g----~i~ND~Tl~~L~~~Als~A~AGADiVAPSdMMDG-rV~aIR~aLd~~g~~~v 189 (322)
T PRK13384 115 MMVIPDICFCEYTDHGHCGVLHND----EVDNDATVENLVKQSVTAAKAGADMLAPSAMMDG-QVKAIRQGLDAAGFEHV 189 (322)
T ss_pred eEEEeeeecccCCCCCceeeccCC----cCccHHHHHHHHHHHHHHHHcCCCeEeccccccc-HHHHHHHHHHHCCCCCC
Confidence 34443 45566544333322112 2566777788888888899999999986655554 56778888888764222
Q ss_pred EEEEEEEc------------------CCCc--ccCCCCHHHHHHHhh--cCCCceEEEECCCChhhHHHHHHHHhhhcCC
Q 019107 212 AWFSFNSK------------------DGIN--VVSGDSILECASIAD--SCEQVVAVGINCTSPRFIHGLILSVRKVTSK 269 (346)
Q Consensus 212 v~is~~~~------------------~~~~--l~~G~~~~~av~~~~--~~~~~~avGvNC~~p~~~~~~l~~l~~~~~~ 269 (346)
-++|-+.+ .+.+ ..|-..-.+|++.+. -..|++.+.|-=.-| -+.+++.+++.++.
T Consensus 190 ~ImSYsaKyaS~fYGPFRdAa~Sap~gDrksYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~--YLDIi~~~k~~~~l 267 (322)
T PRK13384 190 AILAHSAKFASSFYGPFRAAVDCELSGDRKSYQLDYANGRQALLEALLDEAEGADILMVKPGTP--YLDVLSRLRQETHL 267 (322)
T ss_pred ceeehhHhhhhhhcchHHHHhcCCCCCCcccccCCCCCHHHHHHHHHhhHhhCCCEEEEcCCch--HHHHHHHHHhccCC
Confidence 22344321 0111 223233345555442 235789999876543 25677777777899
Q ss_pred cEEEeeCCCCc---cccccccccccCCCChHHHHHHHHHHHHcCCeEE
Q 019107 270 PVIIYPNSGET---YNAELKKWVESTGVRDEDFVSYIGKWRDAGASLF 314 (346)
Q Consensus 270 pl~vypN~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iv 314 (346)
|+.+|--+|+. .-.....|... ...+.|....++.+|+.+|
T Consensus 268 PvaaYqVSGEYaMikaAa~~G~~d~----~~~~~Esl~~~kRAGAd~I 311 (322)
T PRK13384 268 PLAAYQVGGEYAMIKFAALAGALDE----RAVVTETLGGLKRAGADLI 311 (322)
T ss_pred CEEEEEchHHHHHHHHHHHcCCccH----HHHHHHHHHHHHHcCCCEE
Confidence 99999999862 11222356442 3457788888889999876
No 22
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=94.50 E-value=4.3 Score=38.15 Aligned_cols=104 Identities=23% Similarity=0.214 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEc-cC-----CCHHHHHHHHHHHHHh-CCCCcEEEEEEEcCCCcccCCCCHHHH
Q 019107 161 VSLETLKEFHRRRVLILANSGADLIAFE-TI-----PNKLEAKAYAELLEEE-GITIPAWFSFNSKDGINVVSGDSILEC 233 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~~gvD~i~~E-T~-----~~~~E~~a~~~a~~~~-~~~~pv~is~~~~~~~~l~~G~~~~~a 233 (346)
++.+.+++ +++.+.+.|||.|++- |. -+.+|-+.+++.+.+. +.+.|+++.+. +.+..++
T Consensus 15 iD~~~~~~----~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~---------~~~~~~~ 81 (281)
T cd00408 15 VDLDALRR----LVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVG---------ANSTREA 81 (281)
T ss_pred cCHHHHHH----HHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecC---------CccHHHH
Confidence 66655544 6777888999998743 32 2567888888777664 33689998883 3445566
Q ss_pred HHHhh--cCCCceEEEECCC-----ChhhHHHHHHHHhhhcCCcEEEeeCC
Q 019107 234 ASIAD--SCEQVVAVGINCT-----SPRFIHGLILSVRKVTSKPVIIYPNS 277 (346)
Q Consensus 234 v~~~~--~~~~~~avGvNC~-----~p~~~~~~l~~l~~~~~~pl~vypN~ 277 (346)
++.++ +..+++++.+--- +++.+....+.+.+.++.|+++|-+-
T Consensus 82 i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P 132 (281)
T cd00408 82 IELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIP 132 (281)
T ss_pred HHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 66442 2257888888662 23556666777777778999999553
No 23
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=94.41 E-value=1.5 Score=41.87 Aligned_cols=104 Identities=11% Similarity=0.001 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHHHHHHHhCC-CCEEEEc------cCCCHHHHHHHHHHHHH-hCCCCcEEEEEEEcCCCcccCCCCHHH
Q 019107 161 VSLETLKEFHRRRVLILANSG-ADLIAFE------TIPNKLEAKAYAELLEE-EGITIPAWFSFNSKDGINVVSGDSILE 232 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~~g-vD~i~~E------T~~~~~E~~a~~~a~~~-~~~~~pv~is~~~~~~~~l~~G~~~~~ 232 (346)
++.+.++ ++++.+.+.| ||.|++- ..-+.+|-+.+++.+.+ .+.++||++.+. +.+..+
T Consensus 18 iD~~~~~----~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~---------~~~t~~ 84 (290)
T TIGR00683 18 INEKGLR----QIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVG---------SVNLKE 84 (290)
T ss_pred cCHHHHH----HHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecC---------CCCHHH
Confidence 5665544 4677788899 9998643 33377788888876655 333589998873 345566
Q ss_pred HHHHhhc--CCCceEEEECC-----CChhhHHHHHHHHhhhc-CCcEEEeeCC
Q 019107 233 CASIADS--CEQVVAVGINC-----TSPRFIHGLILSVRKVT-SKPVIIYPNS 277 (346)
Q Consensus 233 av~~~~~--~~~~~avGvNC-----~~p~~~~~~l~~l~~~~-~~pl~vypN~ 277 (346)
+++.++. ..+++++.+-= .+.+.+....+.+.+.+ +.|+++|-|-
T Consensus 85 ~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P 137 (290)
T TIGR00683 85 AVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIP 137 (290)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCc
Confidence 6665432 24788877722 12355666666775555 6999999664
No 24
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=94.35 E-value=3.9 Score=39.52 Aligned_cols=228 Identities=20% Similarity=0.213 Sum_probs=128.8
Q ss_pred hHHHHHHHHHHHHhhcceeeccccccCHHhHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCC
Q 019107 54 PHLVRKVHLDYLDAGANIIITASYQATIQGFEA-KGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSR 132 (346)
Q Consensus 54 Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~-~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~ 132 (346)
.+.+.+.-++-++.|-.-|.. |..-....++ .|-+...-..++.+|++..|+.. +
T Consensus 56 id~l~~~v~~~~~~GI~~v~l--Fgvi~~~~Kd~~gs~a~~~~g~v~~air~iK~~~--------------------p-- 111 (324)
T PF00490_consen 56 IDSLVKEVEEAVDLGIRAVIL--FGVIDPSKKDEEGSEAYNPDGLVQRAIRAIKKAF--------------------P-- 111 (324)
T ss_dssp HHHHHHHHHHHHHTT--EEEE--EEE-SCSC-BSS-GGGGSTTSHHHHHHHHHHHHS--------------------T--
T ss_pred HHHHHHHHHHHHHCCCCEEEE--EeeCCcccCCcchhcccCCCChHHHHHHHHHHhC--------------------C--
Confidence 466666677788899885443 2221111111 11110112247777777766553 1
Q ss_pred CcEEEE--ecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCC
Q 019107 133 PVLVAA--SVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITI 210 (346)
Q Consensus 133 ~~~VaG--siGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~ 210 (346)
..+|.. |+-||-+.=++|--= +-+..++-++-.+...+|+-.+.++|+|++.==-|.+- .+.++.+++.+.|...
T Consensus 112 dl~vi~Dvclc~YT~hGHcGil~--~~~g~idND~Tl~~Lak~Al~~A~AGADiVAPSdMMDG-rV~aIR~aLd~~g~~~ 188 (324)
T PF00490_consen 112 DLLVITDVCLCEYTSHGHCGILD--DEDGEIDNDETLERLAKQALSHAEAGADIVAPSDMMDG-RVGAIREALDEAGFSD 188 (324)
T ss_dssp TSEEEEEE-STTTBTSSSSSEB---CTTSSBEHHHHHHHHHHHHHHHHHHT-SEEEE-S--TT-HHHHHHHHHHHTTCTT
T ss_pred CcEEEEecccccccCCCceEEEE--CCCCeEecHHHHHHHHHHHHHHHHhCCCeeccccccCC-HHHHHHHHHHhCCCCC
Confidence 244444 456665554444210 01123677888888888999999999999986655554 5678888898877544
Q ss_pred cEEEEEEEcC-------------------CC--cccCCCCHHHHHHHh--hcCCCceEEEECCCChhhHHHHHHHHhhhc
Q 019107 211 PAWFSFNSKD-------------------GI--NVVSGDSILECASIA--DSCEQVVAVGINCTSPRFIHGLILSVRKVT 267 (346)
Q Consensus 211 pv~is~~~~~-------------------~~--~l~~G~~~~~av~~~--~~~~~~~avGvNC~~p~~~~~~l~~l~~~~ 267 (346)
--++|.+.+- +. ...|-....+|++.+ +-..|++.+.|-=.-| -+.+++.+++.+
T Consensus 189 v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDrktYQmdp~N~~EAlre~~~D~~EGAD~lMVKPal~--YLDIi~~~k~~~ 266 (324)
T PF00490_consen 189 VPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREAELDIEEGADILMVKPALP--YLDIIRRVKERF 266 (324)
T ss_dssp SEEEEEEEEB-SSTGHHHHHHHT-HHSSSTSTTTSB-TT-HHHHHHHHHHHHHTT-SEEEEESSGG--GHHHHHHHHHHC
T ss_pred ccEEechHHHhhhhhHhHHHHhcCCccccCcccccCCCccHHHHHHHhhhhHhhCCCEEEeecchh--HHHHHHHHHHhc
Confidence 4455777541 11 123333455666654 2235789999876544 256778888888
Q ss_pred CCcEEEeeCCCCc---cccccccccccCCCChHHHHHHHHHHHHcCCeEE
Q 019107 268 SKPVIIYPNSGET---YNAELKKWVESTGVRDEDFVSYIGKWRDAGASLF 314 (346)
Q Consensus 268 ~~pl~vypN~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iv 314 (346)
+.|+.+|--+|+. .......|.+. ...+.|....++.+|+.+|
T Consensus 267 ~~P~~aYqVSGEYaMikaAa~~G~~d~----~~~~~Esl~~~kRAGAd~I 312 (324)
T PF00490_consen 267 DLPVAAYQVSGEYAMIKAAAQNGWIDE----KRVVLESLLSIKRAGADII 312 (324)
T ss_dssp TS-EEEEETHHHHHHHHHHHHTTSS-H----HHHHHHHHHHHHHHT-SEE
T ss_pred CCCEEEEEehHHHHHHHHHHHCCCcch----hhHHHHHHHHHHHcCCCEE
Confidence 9999999999862 11122346431 2457777788889999876
No 25
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=94.31 E-value=1.4 Score=42.28 Aligned_cols=104 Identities=23% Similarity=0.208 Sum_probs=71.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEc-c-----CCCHHHHHHHHHHHHHh-CCCCcEEEEEEEcCCCcccCCCCHHHH
Q 019107 161 VSLETLKEFHRRRVLILANSGADLIAFE-T-----IPNKLEAKAYAELLEEE-GITIPAWFSFNSKDGINVVSGDSILEC 233 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~~gvD~i~~E-T-----~~~~~E~~a~~~a~~~~-~~~~pv~is~~~~~~~~l~~G~~~~~a 233 (346)
++++.+ ++.++.+.+.|||.|++- | .-+.+|=+.+++.+.+. +..+|+++.. .+.+..++
T Consensus 22 vD~~a~----~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~---------g~~~t~ea 88 (299)
T COG0329 22 VDEEAL----RRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGV---------GSNSTAEA 88 (299)
T ss_pred cCHHHH----HHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEec---------CCCcHHHH
Confidence 666544 457888888999977632 2 12667777777777663 3358999887 44556777
Q ss_pred HHHhhc--CCCceEEEECCC-----ChhhHHHHHHHHhhhcCCcEEEeeCC
Q 019107 234 ASIADS--CEQVVAVGINCT-----SPRFIHGLILSVRKVTSKPVIIYPNS 277 (346)
Q Consensus 234 v~~~~~--~~~~~avGvNC~-----~p~~~~~~l~~l~~~~~~pl~vypN~ 277 (346)
++..+. ..+++++.+=.- +.+.+..-++.+.+.++.|+++|=+-
T Consensus 89 i~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P 139 (299)
T COG0329 89 IELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIP 139 (299)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 775532 357888887663 23566677777777789999999554
No 26
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=94.19 E-value=2.2 Score=39.74 Aligned_cols=101 Identities=15% Similarity=0.069 Sum_probs=64.6
Q ss_pred HHHHHHHhCCCCEEEEccCC--------------CHHHHHHHHHHHHHhCCC-CcEEEEEEEcCCCcccCCCCHHHHHHH
Q 019107 172 RRVLILANSGADLIAFETIP--------------NKLEAKAYAELLEEEGIT-IPAWFSFNSKDGINVVSGDSILECASI 236 (346)
Q Consensus 172 ~~i~~l~~~gvD~i~~ET~~--------------~~~E~~a~~~a~~~~~~~-~pv~is~~~~~~~~l~~G~~~~~av~~ 236 (346)
+.++.+.++||+.+.+|-.. +.+|...-++++++.-.+ .+++|-..+ |.......+++++++.
T Consensus 88 ~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiART--Da~~~~~~~~~eai~R 165 (243)
T cd00377 88 RTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIART--DALLAGEEGLDEAIER 165 (243)
T ss_pred HHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEc--CchhccCCCHHHHHHH
Confidence 34677778999999997543 677777777777764322 255555533 3322222578889887
Q ss_pred hhc--CCCceEEEECCC-ChhhHHHHHHHHhhhcCCcEEEeeCCC
Q 019107 237 ADS--CEQVVAVGINCT-SPRFIHGLILSVRKVTSKPVIIYPNSG 278 (346)
Q Consensus 237 ~~~--~~~~~avGvNC~-~p~~~~~~l~~l~~~~~~pl~vypN~g 278 (346)
++. ..|++++-+-+. .++.+..+ .+..+.|+++|+..+
T Consensus 166 a~ay~~AGAD~v~v~~~~~~~~~~~~----~~~~~~Pl~~~~~~~ 206 (243)
T cd00377 166 AKAYAEAGADGIFVEGLKDPEEIRAF----AEAPDVPLNVNMTPG 206 (243)
T ss_pred HHHHHHcCCCEEEeCCCCCHHHHHHH----HhcCCCCEEEEecCC
Confidence 743 257888888765 44544444 444678999987654
No 27
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=94.15 E-value=5.3 Score=38.07 Aligned_cols=104 Identities=13% Similarity=0.070 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEc-c-----CCCHHHHHHHHHHHHHh-CCCCcEEEEEEEcCCCcccCCCCHHHH
Q 019107 161 VSLETLKEFHRRRVLILANSGADLIAFE-T-----IPNKLEAKAYAELLEEE-GITIPAWFSFNSKDGINVVSGDSILEC 233 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~~gvD~i~~E-T-----~~~~~E~~a~~~a~~~~-~~~~pv~is~~~~~~~~l~~G~~~~~a 233 (346)
++.+.+ ++.++.+.+.|||.|++- | .-+.+|=+.+++.+.+. ..++||++.+. .+..++
T Consensus 23 iD~~~l----~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~----------~~t~~a 88 (296)
T TIGR03249 23 FDEAAY----RENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG----------GNTSDA 88 (296)
T ss_pred cCHHHH----HHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC----------ccHHHH
Confidence 566554 457888888999998753 3 22677888888766553 33689998862 134566
Q ss_pred HHHhhc--CCCceEEEECCC-----ChhhHHHHHHHHhhhcCCcEEEeeCCC
Q 019107 234 ASIADS--CEQVVAVGINCT-----SPRFIHGLILSVRKVTSKPVIIYPNSG 278 (346)
Q Consensus 234 v~~~~~--~~~~~avGvNC~-----~p~~~~~~l~~l~~~~~~pl~vypN~g 278 (346)
++.++. ..+++++.+--- +.+.+....+.+.++.+.|+++|=+.|
T Consensus 89 i~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn~~g 140 (296)
T TIGR03249 89 IEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQRDN 140 (296)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEeCCC
Confidence 665432 257888877542 124455566666666789999995333
No 28
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=94.07 E-value=5.3 Score=37.53 Aligned_cols=37 Identities=27% Similarity=0.322 Sum_probs=31.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCCCH
Q 019107 155 GDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNK 193 (346)
Q Consensus 155 g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~ 193 (346)
+.|.. +.+++.++-.+-++.|.++|+|.+++|.+.+.
T Consensus 18 p~~~~--~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~ 54 (254)
T PF03437_consen 18 PRYDG--SMEEIIERAVREAEALEEGGVDGIIVENMGDV 54 (254)
T ss_pred CCCCC--CHHHHHHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence 34443 88999999999999999999999999998754
No 29
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=93.98 E-value=0.56 Score=45.29 Aligned_cols=93 Identities=20% Similarity=0.239 Sum_probs=57.3
Q ss_pred hCCCCEEEEccCCCHHHHH---HHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCChh-
Q 019107 179 NSGADLIAFETIPNKLEAK---AYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPR- 254 (346)
Q Consensus 179 ~~gvD~i~~ET~~~~~E~~---a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~p~- 254 (346)
+.|+|++.-|.+....=.. ...+.+.....+.|+++++... +-+.+.+++..+.. .++++|-+||..|.
T Consensus 29 ~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~------~~~~~~~aa~~~~~-~G~d~IelN~gcP~~ 101 (319)
T TIGR00737 29 EYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGS------DPDTMAEAAKINEE-LGADIIDINMGCPVP 101 (319)
T ss_pred HHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCC------CHHHHHHHHHHHHh-CCCCEEEEECCCCHH
Confidence 4568999988876542111 1122223223368999998432 22345666666654 47999999997652
Q ss_pred ----------------hHHHHHHHHhhhcCCcEEEeeCCC
Q 019107 255 ----------------FIHGLILSVRKVTSKPVIIYPNSG 278 (346)
Q Consensus 255 ----------------~~~~~l~~l~~~~~~pl~vypN~g 278 (346)
.+..+++.+++..+.|+.++-..|
T Consensus 102 ~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g 141 (319)
T TIGR00737 102 KITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIG 141 (319)
T ss_pred HhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcc
Confidence 234556677666778998875443
No 30
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=93.78 E-value=0.92 Score=43.43 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=41.8
Q ss_pred CCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCCh----------------hhHHHHHHHHhhhcCCcEE
Q 019107 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSP----------------RFIHGLILSVRKVTSKPVI 272 (346)
Q Consensus 209 ~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~p----------------~~~~~~l~~l~~~~~~pl~ 272 (346)
+.|+++|+.... +-+.+.++++.+.+ .++++|-+||+.| +.+..+++.+++..++|+.
T Consensus 99 ~~p~i~si~G~~-----~~~~~~~~a~~~~~-~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~ 172 (299)
T cd02940 99 DKILIASIMCEY-----NKEDWTELAKLVEE-AGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVI 172 (299)
T ss_pred CCeEEEEecCCC-----CHHHHHHHHHHHHh-cCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeE
Confidence 489999995431 11345566666654 4689999999754 3466777788777788998
Q ss_pred Eee
Q 019107 273 IYP 275 (346)
Q Consensus 273 vyp 275 (346)
+.-
T Consensus 173 vKl 175 (299)
T cd02940 173 AKL 175 (299)
T ss_pred EEC
Confidence 873
No 31
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=93.78 E-value=3 Score=40.57 Aligned_cols=115 Identities=17% Similarity=0.232 Sum_probs=66.8
Q ss_pred CcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcE
Q 019107 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPA 212 (346)
Q Consensus 133 ~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv 212 (346)
..+|.+.+ |+|+ |. .+.+++.+. ..+.+.++|+|.+=+|--. .+...+++.+.+.| .||
T Consensus 96 ~a~vVaDm-PfgS-----------Y~--~s~e~av~n---A~rl~~eaGa~aVKlEGg~--~~~~~~I~~l~~~G--IPV 154 (332)
T PLN02424 96 RPLLVGDL-PFGS-----------YE--SSTDQAVES---AVRMLKEGGMDAVKLEGGS--PSRVTAAKAIVEAG--IAV 154 (332)
T ss_pred CCEEEeCC-CCCC-----------CC--CCHHHHHHH---HHHHHHHhCCcEEEECCCc--HHHHHHHHHHHHcC--CCE
Confidence 56777777 5543 32 256665543 3444567999999999652 33344555555655 999
Q ss_pred EEEEEEcC--CCcc----cCCCCHHHHHHHhh-----cCCCceEEEECCCChhhHHHHHHHHhhhcCCcEE
Q 019107 213 WFSFNSKD--GINV----VSGDSILECASIAD-----SCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVI 272 (346)
Q Consensus 213 ~is~~~~~--~~~l----~~G~~~~~av~~~~-----~~~~~~avGvNC~~p~~~~~~l~~l~~~~~~pl~ 272 (346)
+-.+-+.+ ...+ .-|.+-.++.+.++ ...|+++|-+-|...+ +.+.+.+..++|.+
T Consensus 155 ~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~ivLE~Vp~~----la~~It~~l~IPtI 221 (332)
T PLN02424 155 MGHVGLTPQAISVLGGFRPQGRTAESAVKVVETALALQEAGCFAVVLECVPAP----VAAAITSALQIPTI 221 (332)
T ss_pred EEeecccceeehhhcCccccCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcHH----HHHHHHHhCCCCEE
Confidence 95544332 2222 24555444333332 1368999999999744 44555555677743
No 32
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=93.61 E-value=1.6 Score=42.23 Aligned_cols=93 Identities=14% Similarity=0.149 Sum_probs=54.0
Q ss_pred hCCCCEEEEccCCCHHHHHH---HHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCC---
Q 019107 179 NSGADLIAFETIPNKLEAKA---YAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTS--- 252 (346)
Q Consensus 179 ~~gvD~i~~ET~~~~~E~~a---~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~--- 252 (346)
+.|+|+.+-|.++.-..... ..........+.|+.+++.-. +.+.+.+++..+.. .++++|-+||+.
T Consensus 31 ~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g~------~~~~~~~aa~~~~~-~g~d~IdlN~gCP~~ 103 (321)
T PRK10415 31 EMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGS------DPKEMADAARINVE-SGAQIIDINMGCPAK 103 (321)
T ss_pred HHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEeCC------CHHHHHHHHHHHHH-CCCCEEEEeCCCCHH
Confidence 35789988897765322110 111111112236776666211 22334455555444 578999999974
Q ss_pred --------------hhhHHHHHHHHhhhcCCcEEEeeCCC
Q 019107 253 --------------PRFIHGLILSVRKVTSKPVIIYPNSG 278 (346)
Q Consensus 253 --------------p~~~~~~l~~l~~~~~~pl~vypN~g 278 (346)
|+.+..+++.+++..+.|+.++-..|
T Consensus 104 ~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G 143 (321)
T PRK10415 104 KVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTG 143 (321)
T ss_pred HHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEcc
Confidence 44566777777777788998877655
No 33
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=93.55 E-value=3.6 Score=38.95 Aligned_cols=99 Identities=11% Similarity=0.059 Sum_probs=63.7
Q ss_pred HHHHHHhCCCCEEEEc-cCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCC
Q 019107 173 RVLILANSGADLIAFE-TIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT 251 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~E-T~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~ 251 (346)
-++...++|+|.+-+- ..++++.++.+++.+++.| +.+.+.+.+...... +-+-+.+.++.+.+ .+++.|.+-=+
T Consensus 96 di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G--~~v~~~i~~~~~~~~-~~~~~~~~~~~~~~-~Ga~~i~l~DT 171 (275)
T cd07937 96 FVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAG--KHVEGAICYTGSPVH-TLEYYVKLAKELED-MGADSICIKDM 171 (275)
T ss_pred HHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCC--CeEEEEEEecCCCCC-CHHHHHHHHHHHHH-cCCCEEEEcCC
Confidence 3555677899987554 4457788888899999877 555544433222211 22234445555544 46776665443
Q ss_pred ----ChhhHHHHHHHHhhhcCCcEEEee
Q 019107 252 ----SPRFIHGLILSVRKVTSKPVIIYP 275 (346)
Q Consensus 252 ----~p~~~~~~l~~l~~~~~~pl~vyp 275 (346)
.|+.+..+++.+++..+.|+.+..
T Consensus 172 ~G~~~P~~v~~lv~~l~~~~~~~l~~H~ 199 (275)
T cd07937 172 AGLLTPYAAYELVKALKKEVGLPIHLHT 199 (275)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 499999999999887667776654
No 34
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=93.54 E-value=2.2 Score=41.78 Aligned_cols=99 Identities=15% Similarity=0.199 Sum_probs=57.1
Q ss_pred HHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcC-CCceEEEECCCCh-----------hhHHHHHHHHh
Q 019107 197 KAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSC-EQVVAVGINCTSP-----------RFIHGLILSVR 264 (346)
Q Consensus 197 ~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~-~~~~avGvNC~~p-----------~~~~~~l~~l~ 264 (346)
...++-+++...+.|+++|+..... ...+.+.++.++.++.. ..++++-+|++.| +.+..+++.++
T Consensus 125 ~~~~~~l~~~~~~~pvivsI~~~~~--~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr 202 (344)
T PRK05286 125 DALAERLKKAYRGIPLGINIGKNKD--TPLEDAVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALK 202 (344)
T ss_pred HHHHHHHHHhcCCCcEEEEEecCCC--CCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHH
Confidence 3334434432135899999965432 11233444444443321 2489999998754 35677888888
Q ss_pred hhcC-----CcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCe
Q 019107 265 KVTS-----KPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGAS 312 (346)
Q Consensus 265 ~~~~-----~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 312 (346)
+... .|+.+.-+.. .+.+++.+.++.+.+.|+.
T Consensus 203 ~~~~~~~~~~PV~vKlsp~---------------~~~~~~~~ia~~l~~~Gad 240 (344)
T PRK05286 203 EAQAELHGYVPLLVKIAPD---------------LSDEELDDIADLALEHGID 240 (344)
T ss_pred HHHhccccCCceEEEeCCC---------------CCHHHHHHHHHHHHHhCCc
Confidence 7765 8888875431 2234566666666666543
No 35
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=93.42 E-value=3 Score=47.46 Aligned_cols=157 Identities=22% Similarity=0.196 Sum_probs=95.9
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEccCCC---------HH----HH-HHHHHHHHH----hC---CCCcEEEEEEEcC
Q 019107 162 SLETLKEFHRRRVLILANSGADLIAFETIPN---------KL----EA-KAYAELLEE----EG---ITIPAWFSFNSKD 220 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~---------~~----E~-~a~~~a~~~----~~---~~~pv~is~~~~~ 220 (346)
.++-+.+.|+. ++++|+|+|.--||.. +. |+ +.+++.+++ .. ...|++|.-++-+
T Consensus 63 ~Pe~I~~IH~~----Yl~AGADII~TNTF~a~~~~L~~ygl~~~~~eln~~av~LAreAa~~~~~~~~~~~~~VAGSIGP 138 (1229)
T PRK09490 63 QPDVIEAIHRA----YLEAGADIIETNTFNATTIAQADYGMESLVYELNFAAARLAREAADEWTAKTPDKPRFVAGVLGP 138 (1229)
T ss_pred CHHHHHHHHHH----HHHHhCceeecCCCCCCHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCceEEEEecCC
Confidence 56777888875 5669999887777742 11 11 122333333 21 1368888888877
Q ss_pred CCcccC-----------CCCHHHHHHHhh------cCCCceEEEECCC-ChhhHHHHHHHHhhh-----cCCcEEEeeC-
Q 019107 221 GINVVS-----------GDSILECASIAD------SCEQVVAVGINCT-SPRFIHGLILSVRKV-----TSKPVIIYPN- 276 (346)
Q Consensus 221 ~~~l~~-----------G~~~~~av~~~~------~~~~~~avGvNC~-~p~~~~~~l~~l~~~-----~~~pl~vypN- 276 (346)
.+++.+ +.++.++..... ...+++.+.+--. ....+..++..++.. .+.|+++.-.
T Consensus 139 ~g~~~sl~p~~e~pg~~~it~del~~~y~eQi~~L~e~GVDllliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~T~ 218 (1229)
T PRK09490 139 TNRTASISPDVNDPGFRNVTFDELVAAYREQTRGLIEGGADLILIETIFDTLNAKAAIFAVEEVFEELGVRLPVMISGTI 218 (1229)
T ss_pred CCcccccCCCcccccccCCCHHHHHHHHHHHHHHHHhCCCCEEEEeeeCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEE
Confidence 765432 245666544321 1257999999865 567777777666554 3678766321
Q ss_pred ---CCCccccccccccccCCCChHHHHHHHHHHHHcCCeEEeecCCCchHHHHHHHHHHcCC
Q 019107 277 ---SGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSNK 335 (346)
Q Consensus 277 ---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivGGCCGt~P~hI~al~~~~~~~ 335 (346)
.|... .+.+.+.+...+ ...|+..||==|+++|+++..+-+.+...
T Consensus 219 ~d~~Gr~l----------sG~~~ea~~~~l---~~~~~~avGlNCs~GP~~m~~~l~~l~~~ 267 (1229)
T PRK09490 219 TDASGRTL----------SGQTTEAFWNSL---RHAKPLSIGLNCALGADELRPYVEELSRI 267 (1229)
T ss_pred ECCCCccC----------CCCcHHHHHHHH---hcCCCCEEEEcCCCcHHHHHHHHHHHHHh
Confidence 22211 113344454433 46789999999999999998887777543
No 36
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=93.26 E-value=6.9 Score=37.13 Aligned_cols=136 Identities=21% Similarity=0.197 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhCCCCEEEE------------ccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHH
Q 019107 169 FHRRRVLILANSGADLIAF------------ETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASI 236 (346)
Q Consensus 169 ~~~~~i~~l~~~gvD~i~~------------ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~ 236 (346)
.|.+.++.+.++|+|.|=+ +-..+.+.+..+++++++.- +.|+++-++.. -+++.+.++.
T Consensus 103 ~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~-~~Pv~vKl~~~-------~~~~~~~a~~ 174 (296)
T cd04740 103 EFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT-DVPVIVKLTPN-------VTDIVEIARA 174 (296)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc-CCCEEEEeCCC-------chhHHHHHHH
Confidence 3455667778889999855 22356677778888888863 59999887532 1245566666
Q ss_pred hhcCCCceEE-EECCCC-h--h----------------------hHHHHHHHHhhhcCCcEEEeeCCCCccccccccccc
Q 019107 237 ADSCEQVVAV-GINCTS-P--R----------------------FIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVE 290 (346)
Q Consensus 237 ~~~~~~~~av-GvNC~~-p--~----------------------~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~ 290 (346)
+.+ .++++| -+|+.. . + .....++.+++..+.|++. +.|.
T Consensus 175 ~~~-~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~--~GGI----------- 240 (296)
T cd04740 175 AEE-AGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIG--VGGI----------- 240 (296)
T ss_pred HHH-cCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEE--ECCC-----------
Confidence 655 467765 345531 0 0 1124555555555666543 2321
Q ss_pred cCCCChHHHHHHHHHHHHcCCeEEeecCC--CchHHHHHHHHHHc
Q 019107 291 STGVRDEDFVSYIGKWRDAGASLFGGCCR--TTPNTIKAISRVLS 333 (346)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~G~~ivGGCCG--t~P~hI~al~~~~~ 333 (346)
.++++..+ ++..|+..|+=|-+ .+|..++.+.+.+.
T Consensus 241 ---~~~~da~~----~l~~GAd~V~igra~l~~p~~~~~i~~~l~ 278 (296)
T cd04740 241 ---ASGEDALE----FLMAGASAVQVGTANFVDPEAFKEIIEGLE 278 (296)
T ss_pred ---CCHHHHHH----HHHcCCCEEEEchhhhcChHHHHHHHHHHH
Confidence 23444444 55678888876555 37888888877664
No 37
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=93.12 E-value=5.5 Score=37.79 Aligned_cols=81 Identities=22% Similarity=0.284 Sum_probs=52.1
Q ss_pred CCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCCh-------------hhHHHHHHHHhhhcCCcEEEee
Q 019107 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSP-------------RFIHGLILSVRKVTSKPVIIYP 275 (346)
Q Consensus 209 ~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~p-------------~~~~~~l~~l~~~~~~pl~vyp 275 (346)
+.|+++|+... +-+.+.++++.+.+ .++++|=+|+.+| +.+..+++.+++..+.|+.+.-
T Consensus 89 ~~p~ivsi~g~------~~~~~~~~a~~~~~-~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl 161 (296)
T cd04740 89 GTPVIASIAGS------TVEEFVEVAEKLAD-AGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKL 161 (296)
T ss_pred CCcEEEEEecC------CHHHHHHHHHHHHH-cCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 58999999532 12345566666655 4789999998643 3456677888777788988863
Q ss_pred CCCCccccccccccccCCCChHHHHHHHHHHHHcCCeE
Q 019107 276 NSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASL 313 (346)
Q Consensus 276 N~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~i 313 (346)
+.. .+++.+.++...+.|+..
T Consensus 162 ~~~-----------------~~~~~~~a~~~~~~G~d~ 182 (296)
T cd04740 162 TPN-----------------VTDIVEIARAAEEAGADG 182 (296)
T ss_pred CCC-----------------chhHHHHHHHHHHcCCCE
Confidence 211 124555555666677653
No 38
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=92.91 E-value=2 Score=40.71 Aligned_cols=104 Identities=21% Similarity=0.243 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEc-cC-----CCHHHHHHHHHHHHH-hCCCCcEEEEEEEcCCCcccCCCCHHHH
Q 019107 161 VSLETLKEFHRRRVLILANSGADLIAFE-TI-----PNKLEAKAYAELLEE-EGITIPAWFSFNSKDGINVVSGDSILEC 233 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~~gvD~i~~E-T~-----~~~~E~~a~~~a~~~-~~~~~pv~is~~~~~~~~l~~G~~~~~a 233 (346)
++.+.+ ++.++.+.+.|||.|++- |. -+.+|-+.+++.+.+ .+.+.|+++.+. +.+..++
T Consensus 19 id~~~~----~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~---------~~st~~~ 85 (289)
T PF00701_consen 19 IDEDAL----KRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG---------ANSTEEA 85 (289)
T ss_dssp B-HHHH----HHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE---------SSSHHHH
T ss_pred cCHHHH----HHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc---------chhHHHH
Confidence 565444 457778888999998863 21 256677777777655 344689999884 4466777
Q ss_pred HHHhhc--CCCceEEEECCC-----ChhhHHHHHHHHhhhcCCcEEEeeCC
Q 019107 234 ASIADS--CEQVVAVGINCT-----SPRFIHGLILSVRKVTSKPVIIYPNS 277 (346)
Q Consensus 234 v~~~~~--~~~~~avGvNC~-----~p~~~~~~l~~l~~~~~~pl~vypN~ 277 (346)
++.++. ..+++++.+--- +.+.+....+.+.+.++.|+++|-+-
T Consensus 86 i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P 136 (289)
T PF00701_consen 86 IELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNNP 136 (289)
T ss_dssp HHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBH
T ss_pred HHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEECC
Confidence 765532 257888876531 34667777788888889999999763
No 39
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=92.87 E-value=2.7 Score=40.82 Aligned_cols=87 Identities=11% Similarity=0.166 Sum_probs=52.6
Q ss_pred CCcEEEEEEEcCCCcccCC-CCHHHHHHHhhcCCCceEEEECCCCh-----------hhHHHHHHHHhhhcC-----CcE
Q 019107 209 TIPAWFSFNSKDGINVVSG-DSILECASIADSCEQVVAVGINCTSP-----------RFIHGLILSVRKVTS-----KPV 271 (346)
Q Consensus 209 ~~pv~is~~~~~~~~l~~G-~~~~~av~~~~~~~~~~avGvNC~~p-----------~~~~~~l~~l~~~~~-----~pl 271 (346)
+.|+++|+...+...+..+ +.+.++++.+.. .++++-+|++.| +.+..+++.+++... .|+
T Consensus 128 ~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~--~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv 205 (327)
T cd04738 128 GGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGP--YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPL 205 (327)
T ss_pred CCeEEEEEeCCCCCcccccHHHHHHHHHHHHh--hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCe
Confidence 5899999966442222111 223344444432 378999999755 457788888887764 888
Q ss_pred EEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCe
Q 019107 272 IIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGAS 312 (346)
Q Consensus 272 ~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 312 (346)
.+.-... .+.+++.+.++...+.|+.
T Consensus 206 ~vKl~~~---------------~~~~~~~~ia~~l~~aGad 231 (327)
T cd04738 206 LVKIAPD---------------LSDEELEDIADVALEHGVD 231 (327)
T ss_pred EEEeCCC---------------CCHHHHHHHHHHHHHcCCc
Confidence 8875321 1234566666666666644
No 40
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=92.87 E-value=1.6 Score=41.72 Aligned_cols=81 Identities=21% Similarity=0.270 Sum_probs=51.7
Q ss_pred CCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCC-ceEEEECCCC-------------hhhHHHHHHHHhhhcCCcEEEe
Q 019107 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQ-VVAVGINCTS-------------PRFIHGLILSVRKVTSKPVIIY 274 (346)
Q Consensus 209 ~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~-~~avGvNC~~-------------p~~~~~~l~~l~~~~~~pl~vy 274 (346)
+.|+++|+... +-+.+.++++.+.. .+ +++|=+||+. |+.+..+++.+++..+.|+++.
T Consensus 91 ~~p~i~si~g~------~~~~~~~~a~~~~~-aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vK 163 (301)
T PRK07259 91 DTPIIANVAGS------TEEEYAEVAEKLSK-APNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVK 163 (301)
T ss_pred CCcEEEEeccC------CHHHHHHHHHHHhc-cCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 48999999532 12345556666654 45 8999999843 3456777888887778898886
Q ss_pred eCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeE
Q 019107 275 PNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASL 313 (346)
Q Consensus 275 pN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~i 313 (346)
-+.. .+++.+.++.+.+.|+..
T Consensus 164 l~~~-----------------~~~~~~~a~~l~~~G~d~ 185 (301)
T PRK07259 164 LTPN-----------------VTDIVEIAKAAEEAGADG 185 (301)
T ss_pred cCCC-----------------chhHHHHHHHHHHcCCCE
Confidence 4421 124555555666667643
No 41
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=92.78 E-value=10 Score=36.98 Aligned_cols=165 Identities=13% Similarity=0.094 Sum_probs=89.3
Q ss_pred CcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEc--------c----CCCHHHHHHHHHHHHHhCCCCcEE
Q 019107 146 YLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFE--------T----IPNKLEAKAYAELLEEEGITIPAW 213 (346)
Q Consensus 146 ~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~E--------T----~~~~~E~~a~~~a~~~~~~~~pv~ 213 (346)
+|.||. |.... ..+.++..+ .++.|.++|||.|=+- + ++...+.+.+.++.+... +.++.
T Consensus 9 TLRDG~-q~~~~--~f~~~~~~~----ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~-~~~~~ 80 (333)
T TIGR03217 9 TLRDGM-HAIRH--QFTIEQVRA----IAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVK-RAKVA 80 (333)
T ss_pred CCCCCC-cCCCC--cCCHHHHHH----HHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCC-CCEEE
Confidence 456664 43332 357777766 4556888999988331 0 222223333333333221 22322
Q ss_pred EEEEEcCCCcccCCCCHHHHHHHhhcCCCce--EEEECCCChhhHHHHHHHHhhhcCCcEEEeeCCCCcccccccccccc
Q 019107 214 FSFNSKDGINVVSGDSILECASIADSCEQVV--AVGINCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVES 291 (346)
Q Consensus 214 is~~~~~~~~l~~G~~~~~av~~~~~~~~~~--avGvNC~~p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~ 291 (346)
.+.....+ ...+ ++.+.. .+++ -|.+.|+..+...+.++..++. ...+.+.+-. .+
T Consensus 81 -~ll~pg~~------~~~d-l~~a~~-~gvd~iri~~~~~e~d~~~~~i~~ak~~-G~~v~~~l~~---------s~--- 138 (333)
T TIGR03217 81 -VLLLPGIG------TVHD-LKAAYD-AGARTVRVATHCTEADVSEQHIGMAREL-GMDTVGFLMM---------SH--- 138 (333)
T ss_pred -EEeccCcc------CHHH-HHHHHH-CCCCEEEEEeccchHHHHHHHHHHHHHc-CCeEEEEEEc---------cc---
Confidence 22211111 1233 333322 2444 4567788777777777776653 2223222211 01
Q ss_pred CCCChHHHHHHHHHHHHcCCeEEeecCC----CchHHHHHHHHHHcCCCCCCccc
Q 019107 292 TGVRDEDFVSYIGKWRDAGASLFGGCCR----TTPNTIKAISRVLSNKSLPSANL 342 (346)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~G~~ivGGCCG----t~P~hI~al~~~~~~~~~~~~~~ 342 (346)
..+|+.+.++++...+.|+..|. +|- .+|++++.+-+.++..-+++.++
T Consensus 139 -~~~~e~l~~~a~~~~~~Ga~~i~-i~DT~G~~~P~~v~~~v~~l~~~l~~~i~i 191 (333)
T TIGR03217 139 -MTPPEKLAEQAKLMESYGADCVY-IVDSAGAMLPDDVRDRVRALKAVLKPETQV 191 (333)
T ss_pred -CCCHHHHHHHHHHHHhcCCCEEE-EccCCCCCCHHHHHHHHHHHHHhCCCCceE
Confidence 14588899999999999998874 333 48999999888887654444443
No 42
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=92.73 E-value=2.2 Score=39.65 Aligned_cols=47 Identities=30% Similarity=0.373 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEE
Q 019107 162 SLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFN 217 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~ 217 (346)
..++..+ |.++..++|+|.++++...+.+|++.+.+. .+.|+.+..+
T Consensus 158 ~~~eai~----Ra~ay~~AGAD~v~v~~~~~~~~~~~~~~~-----~~~Pl~~~~~ 204 (243)
T cd00377 158 GLDEAIE----RAKAYAEAGADGIFVEGLKDPEEIRAFAEA-----PDVPLNVNMT 204 (243)
T ss_pred CHHHHHH----HHHHHHHcCCCEEEeCCCCCHHHHHHHHhc-----CCCCEEEEec
Confidence 3455444 788899999999999999899888877664 2488887653
No 43
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=92.67 E-value=2.9 Score=39.92 Aligned_cols=42 Identities=21% Similarity=0.357 Sum_probs=34.0
Q ss_pred HHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEE
Q 019107 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNS 218 (346)
Q Consensus 172 ~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~ 218 (346)
+|.++..++|+|.+++|.+.+.+|++.+.+.+ +.|+++.++.
T Consensus 165 ~Ra~ay~~AGAD~vfi~g~~~~e~i~~~~~~i-----~~Pl~~n~~~ 206 (285)
T TIGR02317 165 ERAKAYVEAGADMIFPEALTSLEEFRQFAKAV-----KVPLLANMTE 206 (285)
T ss_pred HHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhc-----CCCEEEEecc
Confidence 47888999999999999999999988666543 3788877753
No 44
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=92.44 E-value=11 Score=36.32 Aligned_cols=226 Identities=19% Similarity=0.231 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHhhcceeeccccccCHHhHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCC
Q 019107 55 HLVRKVHLDYLDAGANIIITASYQATIQGFEAK-GFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRP 133 (346)
Q Consensus 55 e~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~~-g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (346)
+.+.+.-++-.+.|-..|.. |..-....++. |-....-.-++++|++.-++.. . .
T Consensus 61 d~l~~~~~~~~~lGi~av~L--Fgvp~~~~Kd~~gs~A~~~~givqravr~ik~~~---------------------p-~ 116 (330)
T COG0113 61 DRLVEEAEELVDLGIPAVIL--FGVPDDSKKDETGSEAYDPDGIVQRAVRAIKEAF---------------------P-E 116 (330)
T ss_pred HHHHHHHHHHHhcCCCEEEE--eCCCcccccCcccccccCCCChHHHHHHHHHHhC---------------------C-C
Confidence 45555566778888886654 55443333222 2111111247777777666542 1 2
Q ss_pred cEEE--EecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCc
Q 019107 134 VLVA--ASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIP 211 (346)
Q Consensus 134 ~~Va--GsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~p 211 (346)
..|. -|+-||-+.=++|--+.+. .+.-++-.+.+.+++-...++|+|++.==-|.+- .+.++.+++.+.|...-
T Consensus 117 l~iitDvcLceyT~HGHcGil~~~~---~V~ND~Tle~l~k~Avs~AeAGAdivAPSdMMDG-rV~aIR~aLd~ag~~~v 192 (330)
T COG0113 117 LVVITDVCLCEYTDHGHCGILDDGG---YVDNDETLEILAKQAVSQAEAGADIVAPSDMMDG-RVGAIREALDEAGFIDV 192 (330)
T ss_pred eEEEeeecccCCcCCCccccccCCC---eecchHHHHHHHHHHHHHHHcCCCeecccccccc-hHHHHHHHHHHcCCCcc
Confidence 2232 3456665544444333222 2455777788888888888899999985545443 46777788887664333
Q ss_pred EEEEEEEcC-------------------CCc--ccCCCCHHHHHHHhh--cCCCceEEEECCCChhhHHHHHHHHhhhcC
Q 019107 212 AWFSFNSKD-------------------GIN--VVSGDSILECASIAD--SCEQVVAVGINCTSPRFIHGLILSVRKVTS 268 (346)
Q Consensus 212 v~is~~~~~-------------------~~~--l~~G~~~~~av~~~~--~~~~~~avGvNC~~p~~~~~~l~~l~~~~~ 268 (346)
.++|.+.+= +.+ ..|--...+|++.+. -..|++.+.|-=.-|. +.+++.+++.++
T Consensus 193 ~IMsYsaKyASafYGPFRdAa~Sap~~gdrktYQmDpaN~~EAlrE~~lD~~EGAD~lMVKPal~Y--LDIi~~vk~~~~ 270 (330)
T COG0113 193 PIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREIELDIEEGADILMVKPALPY--LDIIRRVKEEFN 270 (330)
T ss_pred eeeehhHHHhhhccccHHHHhhcccccCCcceeccCCcCHHHHHHHHHhhHhcCCcEEEEcCCchH--HHHHHHHHHhcC
Confidence 333543220 111 223334456666542 2357899998766442 567777788889
Q ss_pred CcEEEeeCCCCc---cccccccccccCCCChHHHHHHHHHHHHcCCeEE
Q 019107 269 KPVIIYPNSGET---YNAELKKWVESTGVRDEDFVSYIGKWRDAGASLF 314 (346)
Q Consensus 269 ~pl~vypN~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iv 314 (346)
.|+.+|--+|+. .-...+.|+.. .....|..-.++.+|+.+|
T Consensus 271 lP~~AYqVSGEYaMikAAa~nGwide----~~~vlEsL~~~kRAGAd~I 315 (330)
T COG0113 271 LPVAAYQVSGEYAMIKAAAQNGWIDE----EKVVLESLTSIKRAGADLI 315 (330)
T ss_pred CCeEEEecchHHHHHHHHHHcCCcch----HHHHHHHHHHHHhcCCCEE
Confidence 999999999962 11123457642 2346666677778887765
No 45
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=92.38 E-value=11 Score=36.25 Aligned_cols=154 Identities=14% Similarity=0.087 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEccCCC-----------HHHHHHH----HHHHHH----hCCCCcEEEEEEEcCCC
Q 019107 162 SLETLKEFHRRRVLILANSGADLIAFETIPN-----------KLEAKAY----AELLEE----EGITIPAWFSFNSKDGI 222 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~-----------~~E~~a~----~~a~~~----~~~~~pv~is~~~~~~~ 222 (346)
.++-+++.|++-+ ++|+|+|.--|+.. .++++.+ ++.+++ .+ ..|++|.-++-+-+
T Consensus 44 ~Pe~V~~vH~~yl----~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~-~~~~~VaGsiGP~g 118 (304)
T PRK09485 44 NPELIYQVHLDYF----RAGADCAITASYQATFQGFAARGLSEAEAEELIRRSVELAKEARDEFW-AEKPLVAGSVGPYG 118 (304)
T ss_pred ChHHHHHHHHHHH----HhCCCEEEeeccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc-cCCceEEEecCCcc
Confidence 4566688887655 57999987777731 1232222 333333 22 12677777775544
Q ss_pred cc-cC--------CCCHHHHHHHh----h--cCCCceEEEECCC-ChhhHHHHHHHHhhhc-CCcEEEeeC---CCCccc
Q 019107 223 NV-VS--------GDSILECASIA----D--SCEQVVAVGINCT-SPRFIHGLILSVRKVT-SKPVIIYPN---SGETYN 282 (346)
Q Consensus 223 ~l-~~--------G~~~~~av~~~----~--~~~~~~avGvNC~-~p~~~~~~l~~l~~~~-~~pl~vypN---~g~~~~ 282 (346)
.. .+ +.+..++.... + ...+++.+.+.-. +.+.+..+++.+++.. ++|+++.-. .|..
T Consensus 119 ~~l~~~~~y~g~~~~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~~~~~~~~~~~~~~pv~is~~~~~~g~l-- 196 (304)
T PRK09485 119 AYLADGSEYRGDYGLSEEELQDFHRPRIEALAEAGADLLACETIPNLDEAEALVELLKEEFPGVPAWLSFTLRDGTHI-- 196 (304)
T ss_pred cccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEeccCCHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcC--
Confidence 32 21 23566654431 1 1257999999976 6777778888777443 688765432 1211
Q ss_pred cccccccccCCCChHHHHHHHHHHHHc-CCeEEeecCCCchHHHHHHHHHHcC
Q 019107 283 AELKKWVESTGVRDEDFVSYIGKWRDA-GASLFGGCCRTTPNTIKAISRVLSN 334 (346)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~ivGGCCGt~P~hI~al~~~~~~ 334 (346)
..+.+.++..+.+. +. ++..||==|. +|+|+..+-+.+..
T Consensus 197 --------~~G~~~~~~~~~l~---~~~~~~~iGiNC~-~p~~~~~~l~~~~~ 237 (304)
T PRK09485 197 --------SDGTPLAEAAALLA---ASPQVVAVGVNCT-APELVTAAIAALRA 237 (304)
T ss_pred --------CCCCCHHHHHHHHh---cCCCceEEEecCC-CHHHHHHHHHHHHh
Confidence 11133455555443 33 4788999896 99999888777754
No 46
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=92.25 E-value=2.7 Score=40.03 Aligned_cols=104 Identities=13% Similarity=0.034 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEc-c-----CCCHHHHHHHHHHHHH-hCCCCcEEEEEEEcCCCcccCCCCHHHH
Q 019107 161 VSLETLKEFHRRRVLILANSGADLIAFE-T-----IPNKLEAKAYAELLEE-EGITIPAWFSFNSKDGINVVSGDSILEC 233 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~~gvD~i~~E-T-----~~~~~E~~a~~~a~~~-~~~~~pv~is~~~~~~~~l~~G~~~~~a 233 (346)
++.+.++ .+++.+.+.|||.|++- | .-+.+|-+.+++.+.+ ...++||++.+.+ +..++
T Consensus 18 iD~~~l~----~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~----------~t~~~ 83 (289)
T cd00951 18 FDEDAYR----AHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY----------GTATA 83 (289)
T ss_pred cCHHHHH----HHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC----------CHHHH
Confidence 6766554 46777888999998643 3 2266777777776555 3336899988732 23445
Q ss_pred HHHhh--cCCCceEEEECCC-----ChhhHHHHHHHHhhhcCCcEEEeeCCC
Q 019107 234 ASIAD--SCEQVVAVGINCT-----SPRFIHGLILSVRKVTSKPVIIYPNSG 278 (346)
Q Consensus 234 v~~~~--~~~~~~avGvNC~-----~p~~~~~~l~~l~~~~~~pl~vypN~g 278 (346)
++.++ ...+++++.+--- +.+.+...++.+.+.++.|+++|=+.|
T Consensus 84 i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~g 135 (289)
T cd00951 84 IAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNRAN 135 (289)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 44432 1257888877442 124566667777777789999996555
No 47
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=92.17 E-value=6.1 Score=37.47 Aligned_cols=104 Identities=20% Similarity=0.161 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHHHHHHHhC-CCCEEEEc-c-----CCCHHHHHHHHHHHHHh-CCCCcEEEEEEEcCCCcccCCCCHHH
Q 019107 161 VSLETLKEFHRRRVLILANS-GADLIAFE-T-----IPNKLEAKAYAELLEEE-GITIPAWFSFNSKDGINVVSGDSILE 232 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~~-gvD~i~~E-T-----~~~~~E~~a~~~a~~~~-~~~~pv~is~~~~~~~~l~~G~~~~~ 232 (346)
++.+.+ ++.++.+.+. |||.|++- | .-+.+|=+.+++.+.+. ...+|+++.+ ...+..+
T Consensus 18 iD~~~~----~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv---------~~~~~~~ 84 (288)
T cd00954 18 INEDVL----RAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHV---------GSLNLKE 84 (288)
T ss_pred CCHHHH----HHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEecc---------CCCCHHH
Confidence 566544 4467778888 99998643 2 12566777777766553 3357888877 3345666
Q ss_pred HHHHhhc--CCCceEEEECCC-----ChhhHHHHHHHHhhhc-CCcEEEeeCC
Q 019107 233 CASIADS--CEQVVAVGINCT-----SPRFIHGLILSVRKVT-SKPVIIYPNS 277 (346)
Q Consensus 233 av~~~~~--~~~~~avGvNC~-----~p~~~~~~l~~l~~~~-~~pl~vypN~ 277 (346)
+++.++. ..+++++.+--- +.+.+....+.+.+++ +.|+++|-|-
T Consensus 85 ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P 137 (288)
T cd00954 85 SQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIP 137 (288)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 6665432 257888876542 2355666777777777 8999999653
No 48
>PRK07534 methionine synthase I; Validated
Probab=92.12 E-value=12 Score=36.50 Aligned_cols=158 Identities=11% Similarity=0.119 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEccCCCH----------HHHHH----HHHHHHHhC--CCCcEEEEEEEcCCCc-c
Q 019107 162 SLETLKEFHRRRVLILANSGADLIAFETIPNK----------LEAKA----YAELLEEEG--ITIPAWFSFNSKDGIN-V 224 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~----------~E~~a----~~~a~~~~~--~~~pv~is~~~~~~~~-l 224 (346)
.++-+++.|++ ++++|+|+|.--|+..- +++.. +++.+++.- ...+++|.-++-+-+. +
T Consensus 43 ~Pe~V~~vH~~----Yl~AGAdiI~TnTy~as~~~l~~~~~~~~~~~l~~~av~lAr~a~~~~~~~~~VaGsIGP~g~~l 118 (336)
T PRK07534 43 HPDNITALHQG----FVDAGSDIILTNSFGGTAARLKLHDAQDRVHELNRAAAEIAREVADKAGRKVIVAGSVGPTGEIM 118 (336)
T ss_pred CHHHHHHHHHH----HHHhcCCEEEecCcccCHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCCCcccc
Confidence 45777778875 55699999997777321 12221 233333321 1246777777655443 3
Q ss_pred cC-C-CCHHHHHH-------HhhcCCCceEEEECCC-ChhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCC
Q 019107 225 VS-G-DSILECAS-------IADSCEQVVAVGINCT-SPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGV 294 (346)
Q Consensus 225 ~~-G-~~~~~av~-------~~~~~~~~~avGvNC~-~p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~ 294 (346)
.+ | .+..++.. .+.+ .++|.+.+--. +...+..+++.+++ .+.|+++.-..- +. ... ..+.
T Consensus 119 ~~~~~~~~~e~~~~~~~qi~~l~~-~gvD~l~~ET~p~l~E~~a~~~~~~~-~~~Pv~vSft~~---~~---g~l-~~G~ 189 (336)
T PRK07534 119 EPMGALTHALAVEAFHEQAEGLKA-GGADVLWVETISAPEEIRAAAEAAKL-AGMPWCGTMSFD---TA---GRT-MMGL 189 (336)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHh-CCCCEEEEeccCCHHHHHHHHHHHHH-cCCeEEEEEEEC---CC---Cee-CCCC
Confidence 22 2 24444433 2222 57999999875 56777777777765 378876643221 00 001 1123
Q ss_pred ChHHHHHHHHHHHHcCCeEEeecCCCchHHH-HHHHHHHc
Q 019107 295 RDEDFVSYIGKWRDAGASLFGGCCRTTPNTI-KAISRVLS 333 (346)
Q Consensus 295 ~~~~~~~~~~~~~~~G~~ivGGCCGt~P~hI-~al~~~~~ 333 (346)
+.++..+++.. ...++..||==|+.+|+|+ +.+.+...
T Consensus 190 ~~~~~~~~~~~-~~~~~~avGvNC~~gp~~~~~~l~~~~~ 228 (336)
T PRK07534 190 TPADLADLVEK-LGEPPLAFGANCGVGASDLLRTVLGFTA 228 (336)
T ss_pred cHHHHHHHHHh-cCCCceEEEecCCCCHHHHHHHHHHHHH
Confidence 34555555543 1224588999999999998 66655543
No 49
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=92.04 E-value=12 Score=36.05 Aligned_cols=223 Identities=19% Similarity=0.244 Sum_probs=132.6
Q ss_pred hHHHHHHHHHHHHhhcceeeccccccCHHhHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCC
Q 019107 54 PHLVRKVHLDYLDAGANIIITASYQATIQGFEAK-GFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSR 132 (346)
Q Consensus 54 Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~~-g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~ 132 (346)
.+.+.+.-++-++.|-.-|.. |.... .++. |-+...-.-++.+|++..|++. +
T Consensus 50 ~d~l~~~~~~~~~~Gi~~v~L--Fgv~~--~Kd~~gs~A~~~~g~v~~air~iK~~~--------------------p-- 103 (314)
T cd00384 50 VDSLVEEAEELADLGIRAVIL--FGIPE--HKDEIGSEAYDPDGIVQRAIRAIKEAV--------------------P-- 103 (314)
T ss_pred HHHHHHHHHHHHHCCCCEEEE--ECCCC--CCCCCcccccCCCChHHHHHHHHHHhC--------------------C--
Confidence 466666677788899885554 33321 1111 2111112346777887776553 1
Q ss_pred CcEEE--EecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCC-
Q 019107 133 PVLVA--ASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGIT- 209 (346)
Q Consensus 133 ~~~Va--GsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~- 209 (346)
..+|. -|+-||-+.=++|---.+ .++-++-.+...+|+-...++|+|++.==-|.+- .+.++.+++.+.|..
T Consensus 104 ~l~vi~DvcLc~YT~hGHcGil~~~----~idND~Tl~~L~k~Als~A~AGADiVAPSdMMDG-rV~aIR~aLd~~g~~~ 178 (314)
T cd00384 104 ELVVITDVCLCEYTDHGHCGILKDD----YVDNDATLELLAKIAVSHAEAGADIVAPSDMMDG-RVAAIREALDEAGFSD 178 (314)
T ss_pred CcEEEEeeeccCCCCCCcceeccCC----cCccHHHHHHHHHHHHHHHHcCCCeeeccccccc-HHHHHHHHHHHCCCCC
Confidence 23333 345666544333321111 2566777888888888899999999985555554 467788888887643
Q ss_pred CcEEEEEEEc-------------------CCCc--ccCCCCHHHHHHHhh--cCCCceEEEECCCChhhHHHHHHHHhhh
Q 019107 210 IPAWFSFNSK-------------------DGIN--VVSGDSILECASIAD--SCEQVVAVGINCTSPRFIHGLILSVRKV 266 (346)
Q Consensus 210 ~pv~is~~~~-------------------~~~~--l~~G~~~~~av~~~~--~~~~~~avGvNC~~p~~~~~~l~~l~~~ 266 (346)
.|++ |-+.+ .+.+ ..|-..-.+|++.+. -..|++.+.|-=.-| -+.+++.+++.
T Consensus 179 v~Im-sYsaKyaSafYGPFRdAa~Sap~~gDRktYQmdpan~~eAlre~~~D~~EGAD~lMVKPal~--YLDIi~~~k~~ 255 (314)
T cd00384 179 VPIM-SYSAKYASAFYGPFRDAADSAPSFGDRKTYQMDPANRREALREVELDIEEGADILMVKPALA--YLDIIRDVRER 255 (314)
T ss_pred Ccee-ecHHHhhhhccchHHHHhhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCch--HHHHHHHHHHh
Confidence 3333 44321 0111 223334455665442 235789999876543 25677777777
Q ss_pred cCCcEEEeeCCCCc---cccccccccccCCCChHHHHHHHHHHHHcCCeEE
Q 019107 267 TSKPVIIYPNSGET---YNAELKKWVESTGVRDEDFVSYIGKWRDAGASLF 314 (346)
Q Consensus 267 ~~~pl~vypN~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iv 314 (346)
++.|+.+|--+|+. .-.....|... ...+.|....++.+|+.+|
T Consensus 256 ~~~PvaaYqVSGEYaMikaAa~~G~id~----~~~~~Esl~~~kRAGAd~I 302 (314)
T cd00384 256 FDLPVAAYNVSGEYAMIKAAAKNGWIDE----ERVVLESLTSIKRAGADLI 302 (314)
T ss_pred cCCCEEEEEccHHHHHHHHHHHcCCccH----HHHHHHHHHHHHhcCCCEE
Confidence 89999999999962 11223456542 2447777788889999876
No 50
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=91.96 E-value=2.5 Score=39.88 Aligned_cols=104 Identities=17% Similarity=0.179 Sum_probs=68.9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEc-c-----CCCHHHHHHHHHHHHHh-CCCCcEEEEEEEcCCCcccCCCCHHHH
Q 019107 161 VSLETLKEFHRRRVLILANSGADLIAFE-T-----IPNKLEAKAYAELLEEE-GITIPAWFSFNSKDGINVVSGDSILEC 233 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~~gvD~i~~E-T-----~~~~~E~~a~~~a~~~~-~~~~pv~is~~~~~~~~l~~G~~~~~a 233 (346)
++.+.+++ .++.+.+.|||.+++- | .-+.+|-+.+++.+.+. ....|+++.. .+.+..++
T Consensus 18 iD~~~~~~----~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv---------~~~~~~~~ 84 (284)
T cd00950 18 VDFDALER----LIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGT---------GSNNTAEA 84 (284)
T ss_pred cCHHHHHH----HHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEecc---------CCccHHHH
Confidence 66655544 6777888999998743 3 24777888888876664 3257888777 34466677
Q ss_pred HHHhhc--CCCceEEEECCC-----ChhhHHHHHHHHhhhcCCcEEEeeCC
Q 019107 234 ASIADS--CEQVVAVGINCT-----SPRFIHGLILSVRKVTSKPVIIYPNS 277 (346)
Q Consensus 234 v~~~~~--~~~~~avGvNC~-----~p~~~~~~l~~l~~~~~~pl~vypN~ 277 (346)
++.++. ..++++|.+-=- +.+.+....+.+.+..+.|+++|-+-
T Consensus 85 ~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P 135 (284)
T cd00950 85 IELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNVP 135 (284)
T ss_pred HHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEECh
Confidence 765532 246776665531 13456666777777678999999663
No 51
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=91.87 E-value=3.4 Score=39.77 Aligned_cols=104 Identities=16% Similarity=0.110 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEE-ccC-----CCHHHHHHHHHHHHH-hCCCCcEEEEEEEcCCCcccCCCCHHHH
Q 019107 161 VSLETLKEFHRRRVLILANSGADLIAF-ETI-----PNKLEAKAYAELLEE-EGITIPAWFSFNSKDGINVVSGDSILEC 233 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~~gvD~i~~-ET~-----~~~~E~~a~~~a~~~-~~~~~pv~is~~~~~~~~l~~G~~~~~a 233 (346)
++.+.+. ++++.+.+.|||.|++ -|. -+.+|-+.+++++.+ .+.++||++... ..+..++
T Consensus 26 iD~~~l~----~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~---------~~~t~~a 92 (309)
T cd00952 26 VDLDETA----RLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGAT---------TLNTRDT 92 (309)
T ss_pred cCHHHHH----HHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEec---------cCCHHHH
Confidence 5665544 4788888899999874 332 266788888876655 333689998883 3455666
Q ss_pred HHHhhc--CCCceEEEECCC-----ChhhHHHHHHHHhhhc-CCcEEEeeCC
Q 019107 234 ASIADS--CEQVVAVGINCT-----SPRFIHGLILSVRKVT-SKPVIIYPNS 277 (346)
Q Consensus 234 v~~~~~--~~~~~avGvNC~-----~p~~~~~~l~~l~~~~-~~pl~vypN~ 277 (346)
++.++. ..+++++.+-=- +.+.+....+.+.+.+ +.|+++|-|-
T Consensus 93 i~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P 144 (309)
T cd00952 93 IARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANP 144 (309)
T ss_pred HHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCc
Confidence 665432 247888877642 2356666777777777 6999999653
No 52
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=91.86 E-value=13 Score=36.01 Aligned_cols=224 Identities=20% Similarity=0.221 Sum_probs=132.4
Q ss_pred hHHHHHHHHHHHHhhcceeeccccccCHHhHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCC
Q 019107 54 PHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRP 133 (346)
Q Consensus 54 Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (346)
.+.+.+.-++-++.|-.-|..+-.-.... ..|-+...-.-++.+|++..+++. ..
T Consensus 58 ~d~l~~~v~~~~~~Gi~av~LFgv~~~Kd---~~gs~A~~~~g~v~rair~iK~~~----------------------p~ 112 (323)
T PRK09283 58 IDLLVKEAEEAVELGIPAVALFGVPELKD---EDGSEAYNPDGLVQRAIRAIKKAF----------------------PE 112 (323)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCcCCCCC---cccccccCCCCHHHHHHHHHHHhC----------------------CC
Confidence 35566677788899988665533311111 112111112346777777766552 13
Q ss_pred cEEEE--ecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCC-C
Q 019107 134 VLVAA--SVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGIT-I 210 (346)
Q Consensus 134 ~~VaG--siGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~-~ 210 (346)
.+|.. |+-||-+.=++|---.| .++-++-.+...+|.-.+.++|+|++.==.|.+- .+.++.+++.+.|.. .
T Consensus 113 l~vi~DVcLc~YT~hGHcGil~~g----~idND~Tl~~L~~~Al~~A~AGaDiVAPSdMMDG-rV~aIR~aLd~~g~~~v 187 (323)
T PRK09283 113 LGVITDVCLDEYTSHGHCGILEDG----YVDNDETLELLAKQALSQAEAGADIVAPSDMMDG-RVGAIREALDEAGFTDV 187 (323)
T ss_pred cEEEEeeeccCCCCCCceecccCC----cCcCHHHHHHHHHHHHHHHHhCCCEEEccccccc-HHHHHHHHHHHCCCCCC
Confidence 44444 45566544333321111 2566777888888988899999999986555554 467788888887642 3
Q ss_pred cEEEEEEEc-------------------CCC--cccCCCCHHHHHHHhh--cCCCceEEEECCCChhhHHHHHHHHhhhc
Q 019107 211 PAWFSFNSK-------------------DGI--NVVSGDSILECASIAD--SCEQVVAVGINCTSPRFIHGLILSVRKVT 267 (346)
Q Consensus 211 pv~is~~~~-------------------~~~--~l~~G~~~~~av~~~~--~~~~~~avGvNC~~p~~~~~~l~~l~~~~ 267 (346)
|++ |-+.+ .+. ...|-..-.+|++.+. -..|++.+.|-=.-|. +.+++.+++.+
T Consensus 188 ~Im-SYsaKyaS~fYGPFRdA~~Sap~~gDrktYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~Y--LDIi~~~k~~~ 264 (323)
T PRK09283 188 PIM-SYSAKYASAFYGPFRDAAGSAPQFGDRKTYQMDPANRREALREVALDIEEGADMVMVKPALPY--LDIIRRVKDEF 264 (323)
T ss_pred cee-ecHHHHHHhhhHHHHHHHhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCchH--HHHHHHHHhcC
Confidence 333 44322 011 1223334455655442 2347899998765432 56777788878
Q ss_pred CCcEEEeeCCCCc---cccccccccccCCCChHHHHHHHHHHHHcCCeEE
Q 019107 268 SKPVIIYPNSGET---YNAELKKWVESTGVRDEDFVSYIGKWRDAGASLF 314 (346)
Q Consensus 268 ~~pl~vypN~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iv 314 (346)
+.|+.+|--+|+. .......|... ...+.|....++.+|+.+|
T Consensus 265 ~~PvaaYqVSGEYaMikaAa~~G~~D~----~~~~~Esl~~~kRAGAd~I 310 (323)
T PRK09283 265 NLPVAAYQVSGEYAMIKAAAQNGWIDE----ERVVLESLLSIKRAGADGI 310 (323)
T ss_pred CCCEEEEEccHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhcCCCEE
Confidence 9999999999962 11222356431 2347777888889999876
No 53
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=91.81 E-value=3.2 Score=39.64 Aligned_cols=103 Identities=17% Similarity=0.075 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEc-cC-----CCHHHHHHHHHHHHH-hCCCCcEEEEEEEcCCCcccCCCCHHHH
Q 019107 161 VSLETLKEFHRRRVLILANSGADLIAFE-TI-----PNKLEAKAYAELLEE-EGITIPAWFSFNSKDGINVVSGDSILEC 233 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~~gvD~i~~E-T~-----~~~~E~~a~~~a~~~-~~~~~pv~is~~~~~~~~l~~G~~~~~a 233 (346)
++.+.+.+ +++.+.+.|||.|++- |. -+.+|=+.+++.+.+ ...+.||++.. ...+..++
T Consensus 18 iD~~~l~~----lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv---------~~~~t~~a 84 (294)
T TIGR02313 18 IDEEALRE----LIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGT---------GALNHDET 84 (294)
T ss_pred cCHHHHHH----HHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEEC---------CcchHHHH
Confidence 67766554 6777888999988632 21 256677777765544 33368999777 33455666
Q ss_pred HHHhhc--CCCceEEEECCC-----ChhhHHHHHHHHhhhc-CCcEEEeeC
Q 019107 234 ASIADS--CEQVVAVGINCT-----SPRFIHGLILSVRKVT-SKPVIIYPN 276 (346)
Q Consensus 234 v~~~~~--~~~~~avGvNC~-----~p~~~~~~l~~l~~~~-~~pl~vypN 276 (346)
++.++. ..+++++.+-=- +.+.+....+.+.+++ +.|+++|=+
T Consensus 85 i~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~ 135 (294)
T TIGR02313 85 LELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNI 135 (294)
T ss_pred HHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeC
Confidence 665532 246676665431 2355666677777777 899999944
No 54
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=91.74 E-value=5.7 Score=41.88 Aligned_cols=98 Identities=17% Similarity=0.204 Sum_probs=67.2
Q ss_pred HHHHHhCCCCEE-EEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCC-
Q 019107 174 VLILANSGADLI-AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT- 251 (346)
Q Consensus 174 i~~l~~~gvD~i-~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~- 251 (346)
++...+.|+|+| +|..+.++.-++..++++++.| +-+..++++.... .-+=+-+.+.++.+.+ .+++.|.|-=+
T Consensus 102 v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G--~~~~~~i~yt~sp-~~t~e~~~~~ak~l~~-~Gad~I~IkDta 177 (596)
T PRK14042 102 VKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHK--KHAQGAICYTTSP-VHTLDNFLELGKKLAE-MGCDSIAIKDMA 177 (596)
T ss_pred HHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcC--CEEEEEEEecCCC-CCCHHHHHHHHHHHHH-cCCCEEEeCCcc
Confidence 445677999998 5778888999999999999987 5555555443222 1112233344554544 47777776543
Q ss_pred ---ChhhHHHHHHHHhhhcCCcEEEee
Q 019107 252 ---SPRFIHGLILSVRKVTSKPVIIYP 275 (346)
Q Consensus 252 ---~p~~~~~~l~~l~~~~~~pl~vyp 275 (346)
.|..+..+++.+++..+.|+.+.-
T Consensus 178 G~l~P~~v~~lv~alk~~~~ipi~~H~ 204 (596)
T PRK14042 178 GLLTPTVTVELYAGLKQATGLPVHLHS 204 (596)
T ss_pred cCCCHHHHHHHHHHHHhhcCCEEEEEe
Confidence 499999999999987778877654
No 55
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=91.67 E-value=2.8 Score=40.16 Aligned_cols=42 Identities=19% Similarity=0.322 Sum_probs=34.8
Q ss_pred HHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEE
Q 019107 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNS 218 (346)
Q Consensus 172 ~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~ 218 (346)
+|.+...++|+|++++|.+.+++|++.+.+.+ ++|+++.++.
T Consensus 170 ~Ra~aY~eAGAD~ifi~~~~~~~~i~~~~~~~-----~~Pl~~n~~~ 211 (292)
T PRK11320 170 ERAQAYVEAGADMIFPEAMTELEMYRRFADAV-----KVPILANITE 211 (292)
T ss_pred HHHHHHHHcCCCEEEecCCCCHHHHHHHHHhc-----CCCEEEEecc
Confidence 47888999999999999999999988777643 3898877753
No 56
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=91.28 E-value=5.9 Score=37.08 Aligned_cols=96 Identities=14% Similarity=0.074 Sum_probs=60.7
Q ss_pred HHHHHhCCCCEEEEc-cCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECC--
Q 019107 174 VLILANSGADLIAFE-TIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC-- 250 (346)
Q Consensus 174 i~~l~~~gvD~i~~E-T~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC-- 250 (346)
++...+.|+|.+-+- ..++..+++.+++.+++.| ..+.+++. +.... +=+-+.+.++.+.+ .+++.|.+-=
T Consensus 91 i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G--~~v~~~~~--~~~~~-~~~~~~~~~~~~~~-~G~d~i~l~DT~ 164 (263)
T cd07943 91 LKMAADLGVDVVRVATHCTEADVSEQHIGAARKLG--MDVVGFLM--MSHMA-SPEELAEQAKLMES-YGADCVYVTDSA 164 (263)
T ss_pred HHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCC--CeEEEEEE--eccCC-CHHHHHHHHHHHHH-cCCCEEEEcCCC
Confidence 445567899988654 4456677888888888877 55554542 22221 11234444555544 4677776642
Q ss_pred --CChhhHHHHHHHHhhhcCC-cEEEee
Q 019107 251 --TSPRFIHGLILSVRKVTSK-PVIIYP 275 (346)
Q Consensus 251 --~~p~~~~~~l~~l~~~~~~-pl~vyp 275 (346)
..|+.+..+++.+++..+. |+.+..
T Consensus 165 G~~~P~~v~~lv~~l~~~~~~~~l~~H~ 192 (263)
T cd07943 165 GAMLPDDVRERVRALREALDPTPVGFHG 192 (263)
T ss_pred CCcCHHHHHHHHHHHHHhCCCceEEEEe
Confidence 2499999999999887665 776654
No 57
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=91.28 E-value=15 Score=35.55 Aligned_cols=226 Identities=20% Similarity=0.250 Sum_probs=131.6
Q ss_pred hHHHHHHHHHHHHhhcceeeccccccCHHhHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCC
Q 019107 54 PHLVRKVHLDYLDAGANIIITASYQATIQGFEA-KGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSR 132 (346)
Q Consensus 54 Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~-~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~ 132 (346)
.+.+.+.-++-++.|-.-+.. |...+...++ .|-+...-..++.+|++..++.. .
T Consensus 53 ~d~l~~~v~~~~~~Gi~~v~l--Fgv~~~~~KD~~gs~A~~~~g~v~~air~iK~~~----------------------p 108 (320)
T cd04823 53 IDELLKEAEEAVDLGIPAVAL--FPVTPPELKSEDGSEAYNPDNLVCRAIRAIKEAF----------------------P 108 (320)
T ss_pred HHHHHHHHHHHHHcCCCEEEE--ecCCCcccCCcccccccCCCChHHHHHHHHHHhC----------------------C
Confidence 355666667888999885543 4442222211 12111111246777777766542 1
Q ss_pred CcEEEE--ecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCC-C
Q 019107 133 PVLVAA--SVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGI-T 209 (346)
Q Consensus 133 ~~~VaG--siGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~-~ 209 (346)
..+|.. |+-||-+.=++|---.+ .++-++-.+...++.-.+.++|+|++.==.|.+- .+.++.+++.+.|. +
T Consensus 109 ~l~vi~DVclc~YT~hGHcGil~~~----~idND~Tl~~L~~~Avs~A~AGADiVAPSdMMDG-rV~aIR~aLd~~g~~~ 183 (320)
T cd04823 109 ELGIITDVALDPYTSHGHDGIVRDG----GILNDETVEVLCKQALVQAEAGADIVAPSDMMDG-RIGAIREALDAEGFTN 183 (320)
T ss_pred CcEEEEeeeccCCCCCCcceeccCC----cCcCHHHHHHHHHHHHHHHHhCCCEEEcccchhh-HHHHHHHHHHHCCCCC
Confidence 344444 45555443333321111 2566777788888888899999999985555544 46778888888764 3
Q ss_pred CcEEEEEEEc----------C---------CCc--ccCCCCHHHHHHHhh--cCCCceEEEECCCChhhHHHHHHHHhhh
Q 019107 210 IPAWFSFNSK----------D---------GIN--VVSGDSILECASIAD--SCEQVVAVGINCTSPRFIHGLILSVRKV 266 (346)
Q Consensus 210 ~pv~is~~~~----------~---------~~~--l~~G~~~~~av~~~~--~~~~~~avGvNC~~p~~~~~~l~~l~~~ 266 (346)
.|++ |-+.+ + +.+ ..|-..-.+|++.+. -..|++.+.|-=.-| -+.+++.+++.
T Consensus 184 v~Im-SYsaKyaS~fYGPFRdAa~Sap~fgDRksYQmdp~n~~eAlre~~~Di~EGAD~lMVKPal~--YLDIi~~~k~~ 260 (320)
T cd04823 184 VSIL-SYAAKYASAFYGPFRDALGSAPRKGDKKTYQMDPANSREALREVALDIAEGADMVMVKPGMP--YLDIIRRVKDE 260 (320)
T ss_pred Ccee-echHHhhhhccchhHHHhcCCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCch--HHHHHHHHHHh
Confidence 4433 44322 0 111 223333445655442 224789999875543 25677777777
Q ss_pred cCCcEEEeeCCCCc---cccccccccccCCCChHHHHHHHHHHHHcCCeEEe
Q 019107 267 TSKPVIIYPNSGET---YNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFG 315 (346)
Q Consensus 267 ~~~pl~vypN~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivG 315 (346)
++.|+.+|--+|+. .-.....|... ...+.|....++.+|+.+|=
T Consensus 261 ~~lPvaaYqVSGEYaMikaAa~~G~~d~----~~~~~Esl~~ikRAGAd~Ii 308 (320)
T cd04823 261 FGVPTFAYQVSGEYAMLKAAAQNGWLDE----DKVMLESLLAFKRAGADGIL 308 (320)
T ss_pred cCCCEEEEEccHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHhcCCCEEe
Confidence 89999999999962 11222356432 24477777888899998873
No 58
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=91.06 E-value=3.6 Score=39.17 Aligned_cols=103 Identities=17% Similarity=0.114 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHHHHHHh-CCCCEEEEc-cC-----CCHHHHHHHHHHHHH-hCCCCcEEEEEEEcCCCcccCCCCHHH
Q 019107 161 VSLETLKEFHRRRVLILAN-SGADLIAFE-TI-----PNKLEAKAYAELLEE-EGITIPAWFSFNSKDGINVVSGDSILE 232 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~-~gvD~i~~E-T~-----~~~~E~~a~~~a~~~-~~~~~pv~is~~~~~~~~l~~G~~~~~ 232 (346)
++.+.++ ..++.+.+ .|||.|++- |. -+.+|=+.+++.+.+ .+.++||++.+. ..+..+
T Consensus 21 iD~~~~~----~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg---------~~~t~~ 87 (293)
T PRK04147 21 IDEQGLR----RLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVG---------SVNTAE 87 (293)
T ss_pred cCHHHHH----HHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCC---------CCCHHH
Confidence 6665554 47788888 999988643 22 256787777776655 333578888772 345667
Q ss_pred HHHHhhc--CCCceEEEECCC-----ChhhHHHHHHHHhhhcCCcEEEeeC
Q 019107 233 CASIADS--CEQVVAVGINCT-----SPRFIHGLILSVRKVTSKPVIIYPN 276 (346)
Q Consensus 233 av~~~~~--~~~~~avGvNC~-----~p~~~~~~l~~l~~~~~~pl~vypN 276 (346)
+++.++. ..+++++.+--- +.+.+...++.+.+.++.|+++|-+
T Consensus 88 ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~ 138 (293)
T PRK04147 88 AQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYNI 138 (293)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 7665432 247787776542 1245566666776667899999955
No 59
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=90.93 E-value=2.6 Score=40.95 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCC-h-----------hhHHHHH
Q 019107 193 KLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTS-P-----------RFIHGLI 260 (346)
Q Consensus 193 ~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~-p-----------~~~~~~l 260 (346)
+++....++.+++.. +.|+++++...+ -+.+.+++..++. .++++|-+|++. | +.+..++
T Consensus 86 ~d~~~~~i~~~~~~~-~~pvi~sI~g~~------~~e~~~~a~~~~~-agad~ielN~scpp~~~~~~g~~~~~~~~eil 157 (334)
T PRK07565 86 PEEYLELIRRAKEAV-DIPVIASLNGSS------AGGWVDYARQIEQ-AGADALELNIYYLPTDPDISGAEVEQRYLDIL 157 (334)
T ss_pred HHHHHHHHHHHHHhc-CCcEEEEeccCC------HHHHHHHHHHHHH-cCCCEEEEeCCCCCCCCCCccccHHHHHHHHH
Confidence 344443443344432 589999994321 1233456666655 478999999743 1 1255677
Q ss_pred HHHhhhcCCcEEEee
Q 019107 261 LSVRKVTSKPVIIYP 275 (346)
Q Consensus 261 ~~l~~~~~~pl~vyp 275 (346)
+.+++..+.|++++=
T Consensus 158 ~~v~~~~~iPV~vKl 172 (334)
T PRK07565 158 RAVKSAVSIPVAVKL 172 (334)
T ss_pred HHHHhccCCcEEEEe
Confidence 888877789999873
No 60
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=90.90 E-value=13 Score=34.24 Aligned_cols=148 Identities=14% Similarity=0.006 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEccCCCH------HHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHH
Q 019107 161 VSLETLKEFHRRRVLILANSGADLIAFETIPNK------LEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECA 234 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~------~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av 234 (346)
.+.++..+ .++.|.+.|||.|=+-..... .....+++.+++.+.+.++. .+ +.. | .+.+
T Consensus 16 ~s~e~~~~----i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~-~l-~~~------~---~~~i 80 (265)
T cd03174 16 FSTEDKLE----IAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQ-AL-VRN------R---EKGI 80 (265)
T ss_pred CCHHHHHH----HHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEE-EE-ccC------c---hhhH
Confidence 56666666 455677789999976655544 44555666666644223332 22 211 2 3344
Q ss_pred HHhhcCCCceEEEECCCCh----------------hhHHHHHHHHhhhcCCcEEEee-CCCCccccccccccccCCCChH
Q 019107 235 SIADSCEQVVAVGINCTSP----------------RFIHGLILSVRKVTSKPVIIYP-NSGETYNAELKKWVESTGVRDE 297 (346)
Q Consensus 235 ~~~~~~~~~~avGvNC~~p----------------~~~~~~l~~l~~~~~~pl~vyp-N~g~~~~~~~~~~~~~~~~~~~ 297 (346)
+.+.. .+++.|.+-+... +.+...++.+++. ...+.+.. ... .. ..+++
T Consensus 81 ~~a~~-~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~-G~~v~~~~~~~~----------~~--~~~~~ 146 (265)
T cd03174 81 ERALE-AGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEA-GLEVEGSLEDAF----------GC--KTDPE 146 (265)
T ss_pred HHHHh-CCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC-CCeEEEEEEeec----------CC--CCCHH
Confidence 44434 3566666666422 2233333333332 33443332 111 00 14578
Q ss_pred HHHHHHHHHHHcCCeEEeecC---CCchHHHHHHHHHHcCCCC
Q 019107 298 DFVSYIGKWRDAGASLFGGCC---RTTPNTIKAISRVLSNKSL 337 (346)
Q Consensus 298 ~~~~~~~~~~~~G~~ivGGCC---Gt~P~hI~al~~~~~~~~~ 337 (346)
++.+.++.+.+.|+..|.=|= .-+|+.++.+-+.++...+
T Consensus 147 ~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~ 189 (265)
T cd03174 147 YVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREALP 189 (265)
T ss_pred HHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCC
Confidence 899999999999998865221 2589999888888776543
No 61
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=90.89 E-value=16 Score=35.28 Aligned_cols=226 Identities=14% Similarity=0.205 Sum_probs=132.8
Q ss_pred hHHHHHHHHHHHHhhcceeeccccccCHHhHHh-C-CCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 019107 54 PHLVRKVHLDYLDAGANIIITASYQATIQGFEA-K-GFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISS 131 (346)
Q Consensus 54 Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~-~-g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~ 131 (346)
.+.+.+.-++-++.|-.-|.. |.......++ . |-+...-.-++.+|++..++.. +
T Consensus 50 ~d~l~~~~~~~~~~Gi~~v~L--Fgv~~~~~Kd~~~gs~a~~~~g~v~~air~iK~~~--------------------p- 106 (320)
T cd04824 50 VNRLEEFLRPLVAKGLRSVIL--FGVPLKPGKDDRSGSAADDEDGPVIQAIKLIREEF--------------------P- 106 (320)
T ss_pred HHHHHHHHHHHHHCCCCEEEE--eCCCccccCCcCccccccCCCChHHHHHHHHHHhC--------------------C-
Confidence 356666667788889885554 4443221111 1 1111111247777787766542 1
Q ss_pred CCcEEEE--ecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCC-
Q 019107 132 RPVLVAA--SVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGI- 208 (346)
Q Consensus 132 ~~~~VaG--siGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~- 208 (346)
..+|-. |+-||-+.=++|---.. ..++-++-.+...+|+-.+.++|+|++.==.|.+- .+.++.+++.+.|.
T Consensus 107 -dl~vi~Dvclc~YT~hGHcGil~~~---g~vdND~Tl~~L~k~Avs~A~AGADiVAPSdMMDG-rV~aIR~aLD~~G~~ 181 (320)
T cd04824 107 -ELLIACDVCLCEYTSHGHCGILYED---GTINNEASVKRLAEVALAYAKAGAHIVAPSDMMDG-RVRAIKQALIQAGLG 181 (320)
T ss_pred -CcEEEEeeeccCCCCCCcceeECCC---CcCcCHHHHHHHHHHHHHHHHhCCCEEeccccccc-HHHHHHHHHHHCCCc
Confidence 233333 45566544333321111 12556777777778888889999999986666554 46778888888775
Q ss_pred -CCcEEEEEEEcC-------------------CCc--ccCCCCHHHHHHHhh--cCCCceEEEECCCChhhHHHHHHHHh
Q 019107 209 -TIPAWFSFNSKD-------------------GIN--VVSGDSILECASIAD--SCEQVVAVGINCTSPRFIHGLILSVR 264 (346)
Q Consensus 209 -~~pv~is~~~~~-------------------~~~--l~~G~~~~~av~~~~--~~~~~~avGvNC~~p~~~~~~l~~l~ 264 (346)
+.|++ |-+.+= +.+ ..+-..-.+|++.+. -..|++.+.|-=.-| -+.+++.++
T Consensus 182 ~~v~Im-SYsaKyaS~fYGPFRdAa~Sap~~gDRksYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~--YLDIi~~~k 258 (320)
T cd04824 182 NKVSVM-SYSAKFASCLYGPFRDAACSAPSFGDRRCYQLPPGARGLALRAVERDVSEGADMIMVKPGTP--YLDIVREAK 258 (320)
T ss_pred cCCeee-ehHHHhhhhccchHHHHhcCCCCCCCccccCCCCcCHHHHHHHHHhhHHhCCCEEEEcCCch--HHHHHHHHH
Confidence 34443 543220 111 223334445665442 235789999876543 256777888
Q ss_pred hhc-CCcEEEeeCCCCc---cccccccccccCCCChHHHHHHHHHHHHcCCeEE
Q 019107 265 KVT-SKPVIIYPNSGET---YNAELKKWVESTGVRDEDFVSYIGKWRDAGASLF 314 (346)
Q Consensus 265 ~~~-~~pl~vypN~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iv 314 (346)
+.+ +.|+.+|--+|+. .-.....|... ...+.|....++.+|+.+|
T Consensus 259 ~~~~~~PvaaYqVSGEYaMikaAa~~G~iDe----~~~~~Esl~~ikRAGAd~I 308 (320)
T cd04824 259 DKHPDLPLAVYHVSGEYAMLHAAAEAGAFDL----KRAVLEAMTGFRRAGADII 308 (320)
T ss_pred HhccCCCEEEEEccHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHhcCCCEE
Confidence 888 8999999999862 11222356442 2447777888889999886
No 62
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=90.85 E-value=12 Score=35.39 Aligned_cols=114 Identities=21% Similarity=0.309 Sum_probs=67.4
Q ss_pred CcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcE
Q 019107 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPA 212 (346)
Q Consensus 133 ~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv 212 (346)
+.+|.+++ |+++ |. .+.++..+ ...+.+.++|+|.+=+|--. |....++++-+.| .||
T Consensus 77 ~~~vv~Dm-Pf~s-----------y~--~s~e~av~---nA~rl~ke~GadaVKlEGg~---~~~~~i~~l~~~G--IPV 134 (261)
T PF02548_consen 77 NAFVVADM-PFGS-----------YQ--ASPEQAVR---NAGRLMKEAGADAVKLEGGA---EIAETIKALVDAG--IPV 134 (261)
T ss_dssp SSEEEEE---TTS-----------ST--SSHHHHHH---HHHHHHHTTT-SEEEEEBSG---GGHHHHHHHHHTT----E
T ss_pred CceEEecC-Cccc-----------cc--CCHHHHHH---HHHHHHHhcCCCEEEeccch---hHHHHHHHHHHCC--CcE
Confidence 56888888 6654 32 25666554 33445556999999999654 4455666677655 999
Q ss_pred EEEEEEcCCC------cccCCCCHHHHHHHhhc-----CCCceEEEECCCChhhHHHHHHHHhhhcCCcEE
Q 019107 213 WFSFNSKDGI------NVVSGDSILECASIADS-----CEQVVAVGINCTSPRFIHGLILSVRKVTSKPVI 272 (346)
Q Consensus 213 ~is~~~~~~~------~l~~G~~~~~av~~~~~-----~~~~~avGvNC~~p~~~~~~l~~l~~~~~~pl~ 272 (346)
+-.+-+.+.. .=.-|.+.+++.+.++. ..++.++-+-|++.+ +.+.+.+..++|.+
T Consensus 135 ~gHiGLtPQ~~~~~GGyr~qGk~~~~a~~l~~~A~ale~AGaf~ivlE~vp~~----la~~It~~l~IPtI 201 (261)
T PF02548_consen 135 MGHIGLTPQSVHQLGGYRVQGKTAEEAEKLLEDAKALEEAGAFAIVLECVPAE----LAKAITEALSIPTI 201 (261)
T ss_dssp EEEEES-GGGHHHHTSS--CSTSHHHHHHHHHHHHHHHHHT-SEEEEESBBHH----HHHHHHHHSSS-EE
T ss_pred EEEecCchhheeccCCceEEecCHHHHHHHHHHHHHHHHcCccEEeeecCHHH----HHHHHHHhCCCCEE
Confidence 9998765532 22356676666555432 258999999999744 44455555678865
No 63
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=90.84 E-value=15 Score=34.92 Aligned_cols=73 Identities=15% Similarity=0.117 Sum_probs=46.5
Q ss_pred HHHHHHHHHhCC-CCEEEE------------ccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHH
Q 019107 170 HRRRVLILANSG-ADLIAF------------ETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASI 236 (346)
Q Consensus 170 ~~~~i~~l~~~g-vD~i~~------------ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~ 236 (346)
|.+.++.+.++| +|.|=+ ....+.+.+..+++++++.- +.|+++-++. +-+++.+.++.
T Consensus 106 ~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~-------~~~~~~~~a~~ 177 (301)
T PRK07259 106 YAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTP-------NVTDIVEIAKA 177 (301)
T ss_pred HHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCC-------CchhHHHHHHH
Confidence 445566677788 999844 12234566777888888764 6899988753 11345566666
Q ss_pred hhcCCCceEEEE-CCC
Q 019107 237 ADSCEQVVAVGI-NCT 251 (346)
Q Consensus 237 ~~~~~~~~avGv-NC~ 251 (346)
+.+ .++++|-+ |++
T Consensus 178 l~~-~G~d~i~~~nt~ 192 (301)
T PRK07259 178 AEE-AGADGLSLINTL 192 (301)
T ss_pred HHH-cCCCEEEEEccc
Confidence 655 47777543 543
No 64
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=90.73 E-value=15 Score=38.84 Aligned_cols=157 Identities=18% Similarity=0.104 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEccCCC----------HHHH----HHHHHHHHHhCCCCcEEEEEEEcCCCcc-cC
Q 019107 162 SLETLKEFHRRRVLILANSGADLIAFETIPN----------KLEA----KAYAELLEEEGITIPAWFSFNSKDGINV-VS 226 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~----------~~E~----~a~~~a~~~~~~~~pv~is~~~~~~~~l-~~ 226 (346)
.++.+++.|++ +.++|+|+|.--|+.. .+++ +.+++++++.. ..+++|.-++-+-+.. ..
T Consensus 41 ~Pe~i~~vH~~----yl~AGAdvi~TnTy~as~~~l~~~g~~~~~~~l~~~av~lAr~a~-~~~~~VagsiGP~g~~~~~ 115 (612)
T PRK08645 41 HPELILRIHRE----YIEAGADVIQTNTFGANRIKLKRYGLEDKVKEINRAAVRLAREAA-GDDVYVAGTIGPIGGRGPL 115 (612)
T ss_pred CHHHHHHHHHH----HHHhCCCEEecCcccccHHHHHhcCchHHHHHHHHHHHHHHHHHh-cCCCeEEEeCCCCCCCCCC
Confidence 56778888876 4559999997777631 1222 22345555543 2567777776544332 12
Q ss_pred C-CCHHHHHHH-------hhcCCCceEEEECCC-ChhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChH
Q 019107 227 G-DSILECASI-------ADSCEQVVAVGINCT-SPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDE 297 (346)
Q Consensus 227 G-~~~~~av~~-------~~~~~~~~avGvNC~-~p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~ 297 (346)
| .+.+++.+. +.+ .+++.+.+.-. +.+.+..+++.+++..+.|+++.-..- +. ... ..+.+.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~l~~-~gvD~l~~ET~~~~~Ea~a~~~a~~~~~~~p~~~Sf~~~---~~---g~l-~~G~~~~ 187 (612)
T PRK08645 116 GDISLEEIRREFREQIDALLE-EGVDGLLLETFYDLEELLLALEAAREKTDLPIIAQVAFH---ED---GVT-QNGTSLE 187 (612)
T ss_pred CCCCHHHHHHHHHHHHHHHHh-cCCCEEEEEccCCHHHHHHHHHHHHHhCCCcEEEEEEEC---CC---Cee-CCCCCHH
Confidence 2 345554332 222 57999999886 567777788877765457865432210 00 001 1112334
Q ss_pred HHHHHHHHHHHcCCeEEeecCCCchHHHHHHHHHHcC
Q 019107 298 DFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSN 334 (346)
Q Consensus 298 ~~~~~~~~~~~~G~~ivGGCCGt~P~hI~al~~~~~~ 334 (346)
+..+. ..+.|+..||=.|..+|+++..+-+.+..
T Consensus 188 ~~~~~---~~~~~~~avGiNC~~~p~~~~~~l~~l~~ 221 (612)
T PRK08645 188 EALKE---LVAAGADVVGLNCGLGPYHMLEALERIPI 221 (612)
T ss_pred HHHHH---HHhCCCCEEEecCCCCHHHHHHHHHHHHh
Confidence 44444 44578999999999999999888777754
No 65
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=90.48 E-value=9.2 Score=34.90 Aligned_cols=119 Identities=22% Similarity=0.196 Sum_probs=69.4
Q ss_pred HHHHHHhCCCCEEEEcc-CCCH------HHHHHHHHHHHHhCCCCcEEEEEEEcCCCccc---CCCCHHHHHHHhhcCCC
Q 019107 173 RVLILANSGADLIAFET-IPNK------LEAKAYAELLEEEGITIPAWFSFNSKDGINVV---SGDSILECASIADSCEQ 242 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET-~~~~------~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~---~G~~~~~av~~~~~~~~ 242 (346)
+++...+.|+|.+.+.- +... ++++.+.+++++.+ .|+++....+ ..++. +.+.+..+++.... .+
T Consensus 81 ~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g--~~~iie~~~~-g~~~~~~~~~~~i~~~~~~a~~-~G 156 (235)
T cd00958 81 SVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYG--LPLIAWMYPR-GPAVKNEKDPDLIAYAARIGAE-LG 156 (235)
T ss_pred CHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcC--CCEEEEEecc-CCcccCccCHHHHHHHHHHHHH-HC
Confidence 46667778998764432 2222 26666666666655 9999865432 22221 22334444444444 58
Q ss_pred ceEEEECCCChhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCe
Q 019107 243 VVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGAS 312 (346)
Q Consensus 243 ~~avGvNC~~p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 312 (346)
++.|+++.+.. ...++++.+....|+++- .|. ...+++++.+.+++..+.|+.
T Consensus 157 aD~Ik~~~~~~---~~~~~~i~~~~~~pvv~~--GG~------------~~~~~~~~l~~~~~~~~~Ga~ 209 (235)
T cd00958 157 ADIVKTKYTGD---AESFKEVVEGCPVPVVIA--GGP------------KKDSEEEFLKMVYDAMEAGAA 209 (235)
T ss_pred CCEEEecCCCC---HHHHHHHHhcCCCCEEEe--CCC------------CCCCHHHHHHHHHHHHHcCCc
Confidence 99999986531 233455555556786443 221 002467788888889999886
No 66
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=90.29 E-value=7.5 Score=37.69 Aligned_cols=124 Identities=15% Similarity=0.214 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhCCC-CEEEEccCCCHHHHHH--HHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceE
Q 019107 169 FHRRRVLILANSGA-DLIAFETIPNKLEAKA--YAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVA 245 (346)
Q Consensus 169 ~~~~~i~~l~~~gv-D~i~~ET~~~~~E~~a--~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~a 245 (346)
.||...+. -|+ |+.+=|.+..-. +.. .-+.+.....+.|+++++.-. +.+.+.+++..+.. .++++
T Consensus 15 ~fR~l~~~---~g~~~~~~TEMv~a~~-l~~~~~~~~l~~~~~e~p~~vQl~g~------~p~~~~~aA~~~~~-~g~d~ 83 (318)
T TIGR00742 15 HFRYFLRL---LSKHTLLYTEMITAKA-IIHGDKKDILKFSPEESPVALQLGGS------DPNDLAKCAKIAEK-RGYDE 83 (318)
T ss_pred HHHHHHHH---hCCCCEEEeCCEEEhh-hhccCHHHHcccCCCCCcEEEEEccC------CHHHHHHHHHHHHh-CCCCE
Confidence 35544433 355 788777664321 100 002233333468999888421 33455666766655 47899
Q ss_pred EEECCCChh-----------------hHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHH
Q 019107 246 VGINCTSPR-----------------FIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRD 308 (346)
Q Consensus 246 vGvNC~~p~-----------------~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (346)
|-+||..|. .+..+++.+++..+.|+.+.-..|. .+. .+.+...++++...+
T Consensus 84 IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~---------~~~--~~~~~~~~~~~~l~~ 152 (318)
T TIGR00742 84 INLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGI---------DPL--DSYEFLCDFVEIVSG 152 (318)
T ss_pred EEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCC---------CCc--chHHHHHHHHHHHHH
Confidence 999997542 2466677777777889988866552 110 012445566666777
Q ss_pred cCCeEE
Q 019107 309 AGASLF 314 (346)
Q Consensus 309 ~G~~iv 314 (346)
.|+..|
T Consensus 153 ~G~~~i 158 (318)
T TIGR00742 153 KGCQNF 158 (318)
T ss_pred cCCCEE
Confidence 887754
No 67
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=89.72 E-value=5.5 Score=38.47 Aligned_cols=101 Identities=18% Similarity=0.134 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhCCCCEEEEccCCCHH---HHHHH---HHHHH---HhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhc
Q 019107 169 FHRRRVLILANSGADLIAFETIPNKL---EAKAY---AELLE---EEGITIPAWFSFNSKDGINVVSGDSILECASIADS 239 (346)
Q Consensus 169 ~~~~~i~~l~~~gvD~i~~ET~~~~~---E~~a~---~~a~~---~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~ 239 (346)
.||..++.+ .++|+.+=|.++... .-+.. ...+. ....+.|+++++.-. +-+.+.+++..+..
T Consensus 15 ~fR~l~~~~--g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g~------~p~~~~~aA~~~~~ 86 (312)
T PRK10550 15 LVRELLTEV--NDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLGQ------YPQWLAENAARAVE 86 (312)
T ss_pred HHHHHHHHh--CCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEeccC------CHHHHHHHHHHHHH
Confidence 344444333 248999999876321 00111 11111 112357999988311 22234555655555
Q ss_pred CCCceEEEECCCChh-----------------hHHHHHHHHhhhc--CCcEEEeeCCC
Q 019107 240 CEQVVAVGINCTSPR-----------------FIHGLILSVRKVT--SKPVIIYPNSG 278 (346)
Q Consensus 240 ~~~~~avGvNC~~p~-----------------~~~~~l~~l~~~~--~~pl~vypN~g 278 (346)
.++++|-+||.+|. .+..+++.+++.. +.|+.+.-..|
T Consensus 87 -~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g 143 (312)
T PRK10550 87 -LGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLG 143 (312)
T ss_pred -cCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECC
Confidence 47899999997542 3344555666555 47998886554
No 68
>PRK06852 aldolase; Validated
Probab=89.64 E-value=7.2 Score=37.62 Aligned_cols=100 Identities=12% Similarity=0.155 Sum_probs=53.7
Q ss_pred HHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcc--------cCCCCHHHHHHHhh-cCCCc
Q 019107 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINV--------VSGDSILECASIAD-SCEQV 243 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l--------~~G~~~~~av~~~~-~~~~~ 243 (346)
.++.+.++|+|.++.= +.+++.......+.|+++.++-...-.- .--.++++|++.=. ...++
T Consensus 64 ~i~~~~~~g~dav~~~--------~G~l~~~~~~~~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~A 135 (304)
T PRK06852 64 LFRIASKAKIGVFATQ--------LGLIARYGMDYPDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNI 135 (304)
T ss_pred HHHHHHhcCCCEEEeC--------HHHHHhhccccCCCcEEEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCc
Confidence 3556777899999843 4555444333346899988863211100 11134566665311 12357
Q ss_pred eEEEECCC-ChhhHHHHHHHHhhh------cCCcEE--EeeCCCCc
Q 019107 244 VAVGINCT-SPRFIHGLILSVRKV------TSKPVI--IYPNSGET 280 (346)
Q Consensus 244 ~avGvNC~-~p~~~~~~l~~l~~~------~~~pl~--vypN~g~~ 280 (346)
+||++..- +.+.-...|+.+.+. ...|++ +||-...+
T Consensus 136 dAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i 181 (304)
T PRK06852 136 LGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAV 181 (304)
T ss_pred eEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCccc
Confidence 88888884 333333334333332 367876 68876544
No 69
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=89.56 E-value=18 Score=34.43 Aligned_cols=136 Identities=20% Similarity=0.097 Sum_probs=77.2
Q ss_pred HHhhcceeeccccccCHHhH-HhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCcEEEEecCCc
Q 019107 65 LDAGANIIITASYQATIQGF-EAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSY 143 (346)
Q Consensus 65 l~AGA~iI~TnTy~as~~~l-~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~ 143 (346)
+++|.+.|... +.+|.... ...+.+.++.-+....+++.|++. ...|-+++.-.
T Consensus 89 ~~~g~~~v~i~-~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~------------------------g~~v~~~i~~~ 143 (287)
T PRK05692 89 LAAGADEVAVF-ASASEAFSQKNINCSIAESLERFEPVAEAAKQA------------------------GVRVRGYVSCV 143 (287)
T ss_pred HHcCCCEEEEE-EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc------------------------CCEEEEEEEEE
Confidence 46788876665 34444332 344666555555556666665533 12333333221
Q ss_pred cCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEc-cCC--CHHHHHHHHHHHHHhCCCCcEEEEEEEcC
Q 019107 144 GAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFE-TIP--NKLEAKAYAELLEEEGITIPAWFSFNSKD 220 (346)
Q Consensus 144 g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~E-T~~--~~~E~~a~~~a~~~~~~~~pv~is~~~~~ 220 (346)
.. .+|.+. .+. +++.+.++.+.+.|+|.|.+- |+. ++.++..+++.+++.-.+. -+.|.+.+
T Consensus 144 ~~-----~~~~~~----~~~----~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~--~i~~H~Hn 208 (287)
T PRK05692 144 LG-----CPYEGE----VPP----EAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAE--RLAGHFHD 208 (287)
T ss_pred ec-----CCCCCC----CCH----HHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCC--eEEEEecC
Confidence 00 012221 344 345556777888999998765 433 6778888888888742123 45777776
Q ss_pred CCcccCCCCHHHHHHHhhcCCCceEE
Q 019107 221 GINVVSGDSILECASIADSCEQVVAV 246 (346)
Q Consensus 221 ~~~l~~G~~~~~av~~~~~~~~~~av 246 (346)
+. |..++.++..++. |++.|
T Consensus 209 ~~----Gla~AN~laA~~a--G~~~i 228 (287)
T PRK05692 209 TY----GQALANIYASLEE--GITVF 228 (287)
T ss_pred CC----CcHHHHHHHHHHh--CCCEE
Confidence 64 6677777777653 44443
No 70
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=89.29 E-value=17 Score=33.57 Aligned_cols=70 Identities=19% Similarity=0.310 Sum_probs=43.6
Q ss_pred HHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCC-----------------hhhHHHHH
Q 019107 198 AYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTS-----------------PRFIHGLI 260 (346)
Q Consensus 198 a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~-----------------p~~~~~~l 260 (346)
..+..+++. +.|+.+++.-. +-+.+.++++.+.. ..++|-+||.. |+.+..++
T Consensus 63 ~~~~~~~~~--~~p~~vqi~g~------~~~~~~~aa~~~~~--~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv 132 (233)
T cd02911 63 GEIKALKDS--NVLVGVNVRSS------SLEPLLNAAALVAK--NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFI 132 (233)
T ss_pred HHHHHhhcc--CCeEEEEecCC------CHHHHHHHHHHHhh--cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHH
Confidence 334445554 37999998321 12234455555544 35899999973 44556677
Q ss_pred HHHhhhcCCcEEEeeCCC
Q 019107 261 LSVRKVTSKPVIIYPNSG 278 (346)
Q Consensus 261 ~~l~~~~~~pl~vypN~g 278 (346)
+.+++ .+.|+.+.-..|
T Consensus 133 ~avr~-~~~pVsvKir~g 149 (233)
T cd02911 133 KALKE-TGVPVSVKIRAG 149 (233)
T ss_pred HHHHh-cCCCEEEEEcCC
Confidence 77776 488998876554
No 71
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=89.28 E-value=14 Score=36.10 Aligned_cols=119 Identities=19% Similarity=0.211 Sum_probs=81.4
Q ss_pred HHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEEC
Q 019107 170 HRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGIN 249 (346)
Q Consensus 170 ~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvN 249 (346)
--.|+..|.++|+|++-+ |+|+.++++++-+..+.. +.|++.-+.|+ ..-|+..++ .+++.+=+|
T Consensus 36 tv~QI~~L~~aGceiVRv-avp~~~~A~al~~I~~~~--~iPlVADIHFd----------~~lAl~a~~--~g~dkiRIN 100 (346)
T TIGR00612 36 TVAQIRALEEAGCDIVRV-TVPDRESAAAFEAIKEGT--NVPLVADIHFD----------YRLAALAMA--KGVAKVRIN 100 (346)
T ss_pred HHHHHHHHHHcCCCEEEE-cCCCHHHHHhHHHHHhCC--CCCEEEeeCCC----------cHHHHHHHH--hccCeEEEC
Confidence 446899999999999874 789999998877766643 59999988774 234555554 367888888
Q ss_pred CC---ChhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHH
Q 019107 250 CT---SPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWR 307 (346)
Q Consensus 250 C~---~p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (346)
=. +.+.+..+++..++. ..|+=+=-|+|.+-..-...| ...+|+.+.+.+.+++
T Consensus 101 PGNig~~e~v~~vv~~ak~~-~ipIRIGVN~GSL~~~~~~ky---g~~t~eamveSAl~~v 157 (346)
T TIGR00612 101 PGNIGFRERVRDVVEKARDH-GKAMRIGVNHGSLERRLLEKY---GDATAEAMVQSALEEA 157 (346)
T ss_pred CCCCCCHHHHHHHHHHHHHC-CCCEEEecCCCCCcHHHHHHc---CCCCHHHHHHHHHHHH
Confidence 86 367777887776654 788777778886532111111 1135677777665554
No 72
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=89.23 E-value=4 Score=38.67 Aligned_cols=103 Identities=15% Similarity=0.146 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEc-c-----CCCHHHHHHHHHHHHHh-CCCCcEEEEEEEcCCCcccCCCCHHHH
Q 019107 161 VSLETLKEFHRRRVLILANSGADLIAFE-T-----IPNKLEAKAYAELLEEE-GITIPAWFSFNSKDGINVVSGDSILEC 233 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~~gvD~i~~E-T-----~~~~~E~~a~~~a~~~~-~~~~pv~is~~~~~~~~l~~G~~~~~a 233 (346)
++.+.+. ++++.+.+.|||.+++- | .-+.+|=+.+++.+.+. ..++||++.. ...+..++
T Consensus 16 iD~~~~~----~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv---------~~~s~~~~ 82 (285)
T TIGR00674 16 VDFAALE----KLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGT---------GSNATEEA 82 (285)
T ss_pred cCHHHHH----HHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeC---------CCccHHHH
Confidence 6665554 46777888999998753 3 23667777777766553 3358999887 33456666
Q ss_pred HHHhhc--CCCceEEEECCC-----ChhhHHHHHHHHhhhcCCcEEEeeC
Q 019107 234 ASIADS--CEQVVAVGINCT-----SPRFIHGLILSVRKVTSKPVIIYPN 276 (346)
Q Consensus 234 v~~~~~--~~~~~avGvNC~-----~p~~~~~~l~~l~~~~~~pl~vypN 276 (346)
++.++. ..+++++.+-=- +++.+....+.+.+.++.|+++|-|
T Consensus 83 i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~ 132 (285)
T TIGR00674 83 ISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNV 132 (285)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 665532 247777776431 2355666677777777899999965
No 73
>PRK15063 isocitrate lyase; Provisional
Probab=88.97 E-value=6.7 Score=39.48 Aligned_cols=33 Identities=42% Similarity=0.443 Sum_probs=28.5
Q ss_pred HHHHHHHhCCCCEEEEcc-CCCHHHHHHHHHHHHH
Q 019107 172 RRVLILANSGADLIAFET-IPNKLEAKAYAELLEE 205 (346)
Q Consensus 172 ~~i~~l~~~gvD~i~~ET-~~~~~E~~a~~~a~~~ 205 (346)
+|..++.+ |+|+|++|| .|+++|++.+++.++.
T Consensus 269 ~Ra~AYa~-GAD~iw~Et~~~d~ee~~~fa~~v~~ 302 (428)
T PRK15063 269 ARGLAYAP-YADLIWCETSTPDLEEARRFAEAIHA 302 (428)
T ss_pred HHHHHHhc-CCCEEEeCCCCCCHHHHHHHHHhhcc
Confidence 36677877 999999998 8999999999988764
No 74
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=88.89 E-value=7.5 Score=37.31 Aligned_cols=42 Identities=24% Similarity=0.256 Sum_probs=34.1
Q ss_pred HHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEE
Q 019107 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNS 218 (346)
Q Consensus 172 ~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~ 218 (346)
+|.++..++|+|.+++|...+.+|++.+++.+ +.|++.++..
T Consensus 169 ~Ra~aY~eAGAD~ifi~~~~~~~ei~~~~~~~-----~~P~~~nv~~ 210 (294)
T TIGR02319 169 RRSREYVAAGADCIFLEAMLDVEEMKRVRDEI-----DAPLLANMVE 210 (294)
T ss_pred HHHHHHHHhCCCEEEecCCCCHHHHHHHHHhc-----CCCeeEEEEe
Confidence 47888999999999999999999988777643 3788776654
No 75
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=88.88 E-value=3.6 Score=39.30 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=40.8
Q ss_pred CCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCC--CceEEEECCCC------------hhhHHHHHHHHhhhcCCcEEEe
Q 019107 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCE--QVVAVGINCTS------------PRFIHGLILSVRKVTSKPVIIY 274 (346)
Q Consensus 209 ~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~--~~~avGvNC~~------------p~~~~~~l~~l~~~~~~pl~vy 274 (346)
+.|+++|+... -+.+.++++.+.... ++++|=+|++. |+.+..+++.+++..++|+.+.
T Consensus 91 ~~pvivsi~g~-------~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vK 163 (294)
T cd04741 91 AKPFFISVTGS-------AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVK 163 (294)
T ss_pred CCeEEEECCCC-------HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 48999999421 123344455454322 57899999973 5667788888888788999886
Q ss_pred e
Q 019107 275 P 275 (346)
Q Consensus 275 p 275 (346)
-
T Consensus 164 l 164 (294)
T cd04741 164 T 164 (294)
T ss_pred e
Confidence 4
No 76
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=88.80 E-value=22 Score=34.68 Aligned_cols=136 Identities=15% Similarity=0.230 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEccCC---------------C---HHHHHHHHHHHHHhCCCCcEEEEEEEcCC----
Q 019107 164 ETLKEFHRRRVLILANSGADLIAFETIP---------------N---KLEAKAYAELLEEEGITIPAWFSFNSKDG---- 221 (346)
Q Consensus 164 ~e~~~~~~~~i~~l~~~gvD~i~~ET~~---------------~---~~E~~a~~~a~~~~~~~~pv~is~~~~~~---- 221 (346)
++..++|+++++ .|+-+|+.|... + +...+.+.+++++.+ .++++.+.-...
T Consensus 37 ~~~~~~y~~rA~----gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~l~d~vh~~G--~~i~~QL~H~G~~~~~ 110 (337)
T PRK13523 37 NFHLIHYGTRAA----GQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHKLVTFIHDHG--AKAAIQLAHAGRKAEL 110 (337)
T ss_pred HHHHHHHHHHHc----CCCeEEEECCeEECccccCCCCceecCCHHHHHHHHHHHHHHHhcC--CEEEEEccCCCCCCCC
Confidence 677778887665 788888877331 1 334555667777765 667777632110
Q ss_pred ---------------CcccCCCCHHH----------HHHHhhcCCCceEEEECCCC---------h--------------
Q 019107 222 ---------------INVVSGDSILE----------CASIADSCEQVVAVGINCTS---------P-------------- 253 (346)
Q Consensus 222 ---------------~~l~~G~~~~~----------av~~~~~~~~~~avGvNC~~---------p-------------- 253 (346)
...+..-+.++ ++..+.. .+.++|-|||.+ |
T Consensus 111 ~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~-aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGsle 189 (337)
T PRK13523 111 EGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKE-AGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPE 189 (337)
T ss_pred CCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHH
Confidence 01111122222 2222323 589999999984 3
Q ss_pred ---hhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeEEe
Q 019107 254 ---RFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFG 315 (346)
Q Consensus 254 ---~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivG 315 (346)
..+..+++.+++..+.|+++.-|..+ +.. .+.++++..+.++.+.+.|+.+|=
T Consensus 190 nR~Rf~~eii~~ir~~~~~~v~vRis~~d--------~~~-~G~~~~e~~~i~~~l~~~gvD~i~ 245 (337)
T PRK13523 190 NRYRFLREIIDAVKEVWDGPLFVRISASD--------YHP-GGLTVQDYVQYAKWMKEQGVDLID 245 (337)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEecccc--------cCC-CCCCHHHHHHHHHHHHHcCCCEEE
Confidence 22345666777766778888776632 111 124567777777777667766553
No 77
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=88.65 E-value=21 Score=35.10 Aligned_cols=139 Identities=14% Similarity=0.095 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEccCC----CHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhc-C
Q 019107 166 LKEFHRRRVLILANSGADLIAFETIP----NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS-C 240 (346)
Q Consensus 166 ~~~~~~~~i~~l~~~gvD~i~~ET~~----~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~-~ 240 (346)
..+.-++.+++..+.|+.+-+=. ++ +. |.+...+.+++...+.|+++++.+.... |.+..++.+.++. .
T Consensus 75 ~~~in~~La~~a~~~G~~~~~Gs-~~~~~~~~-~~~~~~~~vr~~~p~~p~~aNl~~~~~~----~~~~~~~~~~~~~~~ 148 (352)
T PRK05437 75 AKEINRKLAEAAEELGIAMGVGS-QRAALKDP-ELADSFSVVRKVAPDGLLFANLGAVQLY----GYGVEEAQRAVEMIE 148 (352)
T ss_pred HHHHHHHHHHHHHHcCCCeEecc-cHhhccCh-hhHHHHHHHHHHCCCceEEeecCccccC----CCCHHHHHHHHHhcC
Confidence 34445667777777887665522 22 23 3556667777765579999999775332 4455554444432 1
Q ss_pred CCceEEEECCC----Ch---hh---HHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcC
Q 019107 241 EQVVAVGINCT----SP---RF---IHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAG 310 (346)
Q Consensus 241 ~~~~avGvNC~----~p---~~---~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 310 (346)
.....+++||. .| .. +...++.+.+..+.|+++.-+... .+ .+.++.+.+.|
T Consensus 149 adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g--------------~s----~~~a~~l~~~G 210 (352)
T PRK05437 149 ADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVGFG--------------IS----KETAKRLADAG 210 (352)
T ss_pred CCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCCCC--------------Cc----HHHHHHHHHcC
Confidence 34567888883 12 12 335666777667899998754310 12 24445566778
Q ss_pred CeE--EeecCCCchHHHHHH
Q 019107 311 ASL--FGGCCRTTPNTIKAI 328 (346)
Q Consensus 311 ~~i--vGGCCGt~P~hI~al 328 (346)
+.. |+|-+||+-..|+..
T Consensus 211 vd~I~Vsg~GGt~~~~ie~~ 230 (352)
T PRK05437 211 VKAIDVAGAGGTSWAAIENY 230 (352)
T ss_pred CCEEEECCCCCCCccchhhh
Confidence 665 677778775555543
No 78
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=88.60 E-value=5.3 Score=37.77 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=34.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHH
Q 019107 148 ADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKL 194 (346)
Q Consensus 148 ~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~ 194 (346)
.+|--|-..+ .+.+....+.++.+.+|...|+|+++||+|.+.-
T Consensus 243 S~G~~~G~a~---pS~anq~~~~~~i~~~~~~~G~d~fvfeAFdd~W 286 (305)
T COG5309 243 SDGRTYGSAV---PSVANQKIAVQEILNALRSCGYDVFVFEAFDDDW 286 (305)
T ss_pred CCCCccCCcC---CChhHHHHHHHHHHhhhhccCccEEEeeeccccc
Confidence 4454444443 4788888999999999999999999999997654
No 79
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=88.55 E-value=5.6 Score=37.03 Aligned_cols=73 Identities=27% Similarity=0.210 Sum_probs=44.1
Q ss_pred cEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEE
Q 019107 134 VLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAW 213 (346)
Q Consensus 134 ~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~ 213 (346)
++|-+=+|-+...+..-.-|.+.+ . +.+++.+ .-++.+++.++|+|.+++|.+ +.++++.+.+. .++|+.
T Consensus 126 i~ViaRtd~~pq~~~~~gg~~~~~-~--~~~~~~~-ai~Ra~ay~~AGAd~i~~e~~-~~e~~~~i~~~-----~~~P~~ 195 (240)
T cd06556 126 VPVIAHTGLTPQSVNTSGGDEGQY-R--GDEAGEQ-LIADALAYAPAGADLIVMECV-PVELAKQITEA-----LAIPLA 195 (240)
T ss_pred CeEEEEeCCchhhhhccCCceeec-c--CHHHHHH-HHHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHh-----CCCCEE
Confidence 556666665433221111133322 2 3344433 556789999999999999977 88887766664 248877
Q ss_pred EEE
Q 019107 214 FSF 216 (346)
Q Consensus 214 is~ 216 (346)
...
T Consensus 196 ~~g 198 (240)
T cd06556 196 GIG 198 (240)
T ss_pred EEe
Confidence 544
No 80
>PLN02489 homocysteine S-methyltransferase
Probab=88.46 E-value=26 Score=34.21 Aligned_cols=157 Identities=13% Similarity=0.074 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEccCCC-----------HHHHHH--------HHHHHHHhC---------------
Q 019107 162 SLETLKEFHRRRVLILANSGADLIAFETIPN-----------KLEAKA--------YAELLEEEG--------------- 207 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~-----------~~E~~a--------~~~a~~~~~--------------- 207 (346)
.++-+++.|++ ++++|+|+|.--|+.- .+|++. +.++..++.
T Consensus 53 ~Pe~V~~vH~~----yl~AGAdvI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~ 128 (335)
T PLN02489 53 SPHLIRKVHLD----YLEAGADIIITASYQATIQGFESRGLSREESETLLRKSVEIACEARDIFWDKCQKGSTSRPGREL 128 (335)
T ss_pred CHHHHHHHHHH----HHHhCCCEEEecccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccc
Confidence 45778888875 5569999887666631 233222 223332210
Q ss_pred CCCcEEEEEEEcCCCc-ccCC----------CCHHHHHHHhh------cCCCceEEEECCC-ChhhHHHHHHHHhhhc-C
Q 019107 208 ITIPAWFSFNSKDGIN-VVSG----------DSILECASIAD------SCEQVVAVGINCT-SPRFIHGLILSVRKVT-S 268 (346)
Q Consensus 208 ~~~pv~is~~~~~~~~-l~~G----------~~~~~av~~~~------~~~~~~avGvNC~-~p~~~~~~l~~l~~~~-~ 268 (346)
...|++|.-++-+-+. +.+| .+..++.+... ...++|.|.+--. +...+..+++.+++.. +
T Consensus 129 ~~~~~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~ 208 (335)
T PLN02489 129 SYRPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEENIK 208 (335)
T ss_pred CCCCcEEEEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCC
Confidence 1257888888766553 2222 45555544321 1257999999876 5666777777776553 5
Q ss_pred CcEEEeeC---CCCccccccccccccCCCChHHHHHHHHHHHHcCCeEEeecCCCchHHHHHHHHHHcCC
Q 019107 269 KPVIIYPN---SGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSNK 335 (346)
Q Consensus 269 ~pl~vypN---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivGGCCGt~P~hI~al~~~~~~~ 335 (346)
+|+++.-. .|.+. .+.+.++..+.+.+ ..++..||==| +.|+++..+-+.++..
T Consensus 209 ~p~~iS~t~~~~~~l~----------~G~~~~~~~~~~~~--~~~~~~iGiNC-~~p~~~~~~l~~l~~~ 265 (335)
T PLN02489 209 IPAWISFNSKDGVNVV----------SGDSLLECASIADS--CKKVVAVGINC-TPPRFIHGLILSIRKV 265 (335)
T ss_pred CeEEEEEEeCCCCccC----------CCCcHHHHHHHHHh--cCCceEEEecC-CCHHHHHHHHHHHHhh
Confidence 78655332 11111 11233444444322 13677899888 4999999888887643
No 81
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=88.44 E-value=16 Score=37.38 Aligned_cols=98 Identities=12% Similarity=0.214 Sum_probs=65.2
Q ss_pred HHHHHhCCCCEE-EEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCC-
Q 019107 174 VLILANSGADLI-AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT- 251 (346)
Q Consensus 174 i~~l~~~gvD~i-~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~- 251 (346)
++...+.|+|+| ++--+.++.-++.+++++++.|...-+.++++..+.. +=+-+.+.++.+.+ .+++.|.+-=+
T Consensus 111 v~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~---t~~y~~~~a~~l~~-~Gad~I~IkDta 186 (468)
T PRK12581 111 ISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVH---TLNYYLSLVKELVE-MGADSICIKDMA 186 (468)
T ss_pred HHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcC---cHHHHHHHHHHHHH-cCCCEEEECCCC
Confidence 556777999998 4566778888888899999987322233444332211 11123455555544 47777776554
Q ss_pred ---ChhhHHHHHHHHhhhcCCcEEEee
Q 019107 252 ---SPRFIHGLILSVRKVTSKPVIIYP 275 (346)
Q Consensus 252 ---~p~~~~~~l~~l~~~~~~pl~vyp 275 (346)
.|..+..+++.+++..+.|+.+.-
T Consensus 187 G~l~P~~v~~Lv~alk~~~~~pi~~H~ 213 (468)
T PRK12581 187 GILTPKAAKELVSGIKAMTNLPLIVHT 213 (468)
T ss_pred CCcCHHHHHHHHHHHHhccCCeEEEEe
Confidence 499999999999887778887764
No 82
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=87.95 E-value=27 Score=36.91 Aligned_cols=97 Identities=14% Similarity=0.162 Sum_probs=66.0
Q ss_pred HHHHHHhCCCCEE-EEccCCCHHHHHHHHHHHHHhCCCCcE--EEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEEC
Q 019107 173 RVLILANSGADLI-AFETIPNKLEAKAYAELLEEEGITIPA--WFSFNSKDGINVVSGDSILECASIADSCEQVVAVGIN 249 (346)
Q Consensus 173 ~i~~l~~~gvD~i-~~ET~~~~~E~~a~~~a~~~~~~~~pv--~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvN 249 (346)
-++...++|+|+| +|-.+.++..++.+++++++.| +-+ .|+++..+.. +-+-+.+.++.+.+ .+++.|.+-
T Consensus 102 ~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G--~~~~~~i~yt~~p~~---~~~~~~~~a~~l~~-~Gad~i~i~ 175 (593)
T PRK14040 102 FVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVG--AHAQGTLSYTTSPVH---TLQTWVDLAKQLED-MGVDSLCIK 175 (593)
T ss_pred HHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcC--CeEEEEEEEeeCCcc---CHHHHHHHHHHHHH-cCCCEEEEC
Confidence 3556778999977 5567788888899999999987 544 3444432211 11224455555544 467777664
Q ss_pred CC----ChhhHHHHHHHHhhhcCCcEEEee
Q 019107 250 CT----SPRFIHGLILSVRKVTSKPVIIYP 275 (346)
Q Consensus 250 C~----~p~~~~~~l~~l~~~~~~pl~vyp 275 (346)
=+ .|+.+..+++.+++..+.|+.+.-
T Consensus 176 Dt~G~l~P~~~~~lv~~lk~~~~~pi~~H~ 205 (593)
T PRK14040 176 DMAGLLKPYAAYELVSRIKKRVDVPLHLHC 205 (593)
T ss_pred CCCCCcCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 43 499999999999988788887764
No 83
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=87.85 E-value=28 Score=33.96 Aligned_cols=165 Identities=16% Similarity=0.121 Sum_probs=90.0
Q ss_pred CcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEc------------cCCCHHHHHHHHHHHHHhCCCCcEE
Q 019107 146 YLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFE------------TIPNKLEAKAYAELLEEEGITIPAW 213 (346)
Q Consensus 146 ~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~E------------T~~~~~E~~a~~~a~~~~~~~~pv~ 213 (346)
+|.||. |.... ..+.++..+ .++.|.++|||.|=+- -++...+.+ .++.+++...+.++.
T Consensus 10 TLRDG~-q~~~~--~f~~~~~~~----i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e-~i~~~~~~~~~~~~~ 81 (337)
T PRK08195 10 TLRDGM-HAVRH--QYTLEQVRA----IARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEE-YIEAAAEVVKQAKIA 81 (337)
T ss_pred CCCCcC-cCCCC--ccCHHHHHH----HHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHH-HHHHHHHhCCCCEEE
Confidence 456664 44333 257777666 4566888999998431 112112222 223332222123332
Q ss_pred EEEEEcCCCcccCCCCHHHHHHHhhcCCCceE--EEECCCChhhHHHHHHHHhhhcCCcEEEeeCCCCcccccccccccc
Q 019107 214 FSFNSKDGINVVSGDSILECASIADSCEQVVA--VGINCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVES 291 (346)
Q Consensus 214 is~~~~~~~~l~~G~~~~~av~~~~~~~~~~a--vGvNC~~p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~ 291 (346)
.+.....+ .+.++ +.+.. .+++. |.+.|+..+.+.+.++..++. ...+.+.+-. .
T Consensus 82 -~ll~pg~~------~~~dl-~~a~~-~gvd~iri~~~~~e~~~~~~~i~~ak~~-G~~v~~~l~~-------------a 138 (337)
T PRK08195 82 -ALLLPGIG------TVDDL-KMAYD-AGVRVVRVATHCTEADVSEQHIGLAREL-GMDTVGFLMM-------------S 138 (337)
T ss_pred -EEeccCcc------cHHHH-HHHHH-cCCCEEEEEEecchHHHHHHHHHHHHHC-CCeEEEEEEe-------------c
Confidence 22211111 23333 33322 24454 668888777777777777654 2223222211 0
Q ss_pred CCCChHHHHHHHHHHHHcCCeEEeecCC----CchHHHHHHHHHHcCCCCCCccc
Q 019107 292 TGVRDEDFVSYIGKWRDAGASLFGGCCR----TTPNTIKAISRVLSNKSLPSANL 342 (346)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~G~~ivGGCCG----t~P~hI~al~~~~~~~~~~~~~~ 342 (346)
...+++.+.++++++.+.|+..|. +|- -+|+.++.+-+.++..-+++-++
T Consensus 139 ~~~~~e~l~~~a~~~~~~Ga~~i~-i~DT~G~~~P~~v~~~v~~l~~~l~~~i~i 192 (337)
T PRK08195 139 HMAPPEKLAEQAKLMESYGAQCVY-VVDSAGALLPEDVRDRVRALRAALKPDTQV 192 (337)
T ss_pred cCCCHHHHHHHHHHHHhCCCCEEE-eCCCCCCCCHHHHHHHHHHHHHhcCCCCeE
Confidence 114578899999999999998875 332 48999998888887654444444
No 84
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=87.76 E-value=22 Score=35.21 Aligned_cols=112 Identities=18% Similarity=0.100 Sum_probs=60.5
Q ss_pred CcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEE-EEccCC-----CH-HHHHHHHHHHH-
Q 019107 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLI-AFETIP-----NK-LEAKAYAELLE- 204 (346)
Q Consensus 133 ~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i-~~ET~~-----~~-~E~~a~~~a~~- 204 (346)
+.++...+=|.| ++.+++.+ ++..+..+|||+| --|.+. .. +.++++.++++
T Consensus 126 rPl~~tiiKP~G----------------L~~~~~a~----~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~ 185 (364)
T cd08210 126 RPLLCSALKPQG----------------LSAAELAE----LAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAE 185 (364)
T ss_pred CceEEEEecccc----------------CCHHHHHH----HHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHH
Confidence 456666666643 46655554 5666777999999 333332 22 23334444443
Q ss_pred ---HhCCCCcEEEEEEEcCCCcccCCCCHHHHHHH---hhcCCCceEEEECCCChhhHHHHHHHHhhhcC-CcEEEeeCC
Q 019107 205 ---EEGITIPAWFSFNSKDGINVVSGDSILECASI---ADSCEQVVAVGINCTSPRFIHGLILSVRKVTS-KPVIIYPNS 277 (346)
Q Consensus 205 ---~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~---~~~~~~~~avGvNC~~p~~~~~~l~~l~~~~~-~pl~vypN~ 277 (346)
++|..+++.+.++ +. ..++++. +.+ .++.++++|-.... ...+..+++... .|+..+|+.
T Consensus 186 a~~eTG~~~~y~~Nit---------a~-~~em~~ra~~a~~-~Ga~~vMv~~~~~G--~~~~~~l~~~~~~l~i~aHra~ 252 (364)
T cd08210 186 ANAETGGRTLYAPNVT---------GP-PTQLLERARFAKE-AGAGGVLIAPGLTG--LDTFRELAEDFDFLPILAHPAF 252 (364)
T ss_pred HHhhcCCcceEEEecC---------CC-HHHHHHHHHHHHH-cCCCEEEeecccch--HHHHHHHHhcCCCcEEEEcccc
Confidence 3554567776663 22 2344443 333 47788888875321 123344444445 677777664
No 85
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=87.69 E-value=10 Score=35.48 Aligned_cols=99 Identities=21% Similarity=0.247 Sum_probs=61.0
Q ss_pred HHHHHHhCC-CCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCC
Q 019107 173 RVLILANSG-ADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT 251 (346)
Q Consensus 173 ~i~~l~~~g-vD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~ 251 (346)
.++.+.+.+ +|++=+|--...+....++..+++.+ .++++|+. +-..+++-+.+.+.++.+.. .+++.+=+-+.
T Consensus 100 ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~--~kvI~S~H--~f~~tP~~~~l~~~~~~~~~-~gaDivKia~~ 174 (253)
T PRK02412 100 LIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHEHG--VKVVLSYH--DFEKTPPKEEIVERLRKMES-LGADIVKIAVM 174 (253)
T ss_pred HHHHHHhcCCCCEEEEeccCChHHHHHHHHHHHHcC--CEEEEeeC--CCCCCcCHHHHHHHHHHHHH-hCCCEEEEEec
Confidence 344556667 89999996555455566666666644 88999885 22233333345566666544 46676666664
Q ss_pred --ChhhHHHHHHHHhhh----cCCcEEEeeC
Q 019107 252 --SPRFIHGLILSVRKV----TSKPVIIYPN 276 (346)
Q Consensus 252 --~p~~~~~~l~~l~~~----~~~pl~vypN 276 (346)
++.....+++..... .+.|++++.-
T Consensus 175 a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~M 205 (253)
T PRK02412 175 PQSEQDVLTLLNATREMKELYADQPLITMSM 205 (253)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 466666666544322 4679888864
No 86
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=87.56 E-value=14 Score=35.30 Aligned_cols=43 Identities=21% Similarity=0.205 Sum_probs=33.8
Q ss_pred HHHHHHHhCCCCEEEEcc-CCCHHHHHHHHHHHHHhCCCCcEEE
Q 019107 172 RRVLILANSGADLIAFET-IPNKLEAKAYAELLEEEGITIPAWF 214 (346)
Q Consensus 172 ~~i~~l~~~gvD~i~~ET-~~~~~E~~a~~~a~~~~~~~~pv~i 214 (346)
+|++...++|+|.++++. .++.+|++.+.+.++..-.++|+++
T Consensus 173 ~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~ 216 (285)
T TIGR02320 173 KRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVI 216 (285)
T ss_pred HHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEE
Confidence 378889999999999996 6899999998887764212478753
No 87
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=87.47 E-value=23 Score=34.63 Aligned_cols=74 Identities=14% Similarity=0.051 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhCCCCEEEEcc----------CCCHHHHHHHHHHHHHhCC----CCcEEEEEEEcCCCcccCCCCHHHHH
Q 019107 169 FHRRRVLILANSGADLIAFET----------IPNKLEAKAYAELLEEEGI----TIPAWFSFNSKDGINVVSGDSILECA 234 (346)
Q Consensus 169 ~~~~~i~~l~~~gvD~i~~ET----------~~~~~E~~a~~~a~~~~~~----~~pv~is~~~~~~~~l~~G~~~~~av 234 (346)
.|.+.++.+.+ ++|+|-+.- ..+...+..+++++++.-. ++||++-++.. . +-+.+.+.+
T Consensus 158 d~~~~~~~~~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~--~---~~~~~~~ia 231 (344)
T PRK05286 158 DYLICLEKLYP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPD--L---SDEELDDIA 231 (344)
T ss_pred HHHHHHHHHHh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCC--C---CHHHHHHHH
Confidence 34456666653 699997762 1234556667777776432 28999988742 1 111355666
Q ss_pred HHhhcCCCceEEEEC
Q 019107 235 SIADSCEQVVAVGIN 249 (346)
Q Consensus 235 ~~~~~~~~~~avGvN 249 (346)
+.+.+ .++++|-+-
T Consensus 232 ~~l~~-~Gadgi~~~ 245 (344)
T PRK05286 232 DLALE-HGIDGVIAT 245 (344)
T ss_pred HHHHH-hCCcEEEEe
Confidence 66655 467765553
No 88
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=87.41 E-value=24 Score=34.75 Aligned_cols=118 Identities=17% Similarity=0.200 Sum_probs=77.9
Q ss_pred HHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEEC
Q 019107 170 HRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGIN 249 (346)
Q Consensus 170 ~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvN 249 (346)
-..||..|.++|+|++-+ |+|+.++++++-+..++. +.|++.-+.|+ ..-|+..++ .+++++=+|
T Consensus 44 tv~Qi~~L~~aGceiVRv-av~~~~~a~al~~I~~~~--~iPlvADIHFd----------~~lAl~a~~--~G~~~iRIN 108 (360)
T PRK00366 44 TVAQIKRLARAGCEIVRV-AVPDMEAAAALPEIKKQL--PVPLVADIHFD----------YRLALAAAE--AGADALRIN 108 (360)
T ss_pred HHHHHHHHHHcCCCEEEE-ccCCHHHHHhHHHHHHcC--CCCEEEecCCC----------HHHHHHHHH--hCCCEEEEC
Confidence 446899999999999874 799999999887766664 49999888773 234555554 367888888
Q ss_pred CCC----hhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHH
Q 019107 250 CTS----PRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKW 306 (346)
Q Consensus 250 C~~----p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (346)
=.. .+.+..+++..++ ...|+=+=-|+|.+-..-...|- ..+|+.+.+.+.+.
T Consensus 109 PGNig~~~~~v~~vv~~ak~-~~ipIRIGvN~GSL~~~~~~~yg---~~t~eamveSAl~~ 165 (360)
T PRK00366 109 PGNIGKRDERVREVVEAAKD-YGIPIRIGVNAGSLEKDLLEKYG---EPTPEALVESALRH 165 (360)
T ss_pred CCCCCchHHHHHHHHHHHHH-CCCCEEEecCCccChHHHHHHcC---CCCHHHHHHHHHHH
Confidence 763 4566666666554 37787777788865221111120 12456666655443
No 89
>PLN02417 dihydrodipicolinate synthase
Probab=87.29 E-value=4.5 Score=38.29 Aligned_cols=101 Identities=18% Similarity=0.038 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEc-cC-----CCHHHHHHHHHHHHH-hCCCCcEEEEEEEcCCCcccCCCCHHHH
Q 019107 161 VSLETLKEFHRRRVLILANSGADLIAFE-TI-----PNKLEAKAYAELLEE-EGITIPAWFSFNSKDGINVVSGDSILEC 233 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~~gvD~i~~E-T~-----~~~~E~~a~~~a~~~-~~~~~pv~is~~~~~~~~l~~G~~~~~a 233 (346)
++.+. ++++++.+.+.|||.|++- |. -+.+|-+.+++.+.+ ....+|+++.+ ...+..++
T Consensus 19 iD~~~----~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv---------~~~~t~~~ 85 (280)
T PLN02417 19 FDLEA----YDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNT---------GSNSTREA 85 (280)
T ss_pred cCHHH----HHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEEC---------CCccHHHH
Confidence 56654 4457888888999998752 32 256777777776554 33358999877 34456777
Q ss_pred HHHhhc--CCCceEEEECCC-----ChhhHHHHHHHHhhhcCCcEEEeeC
Q 019107 234 ASIADS--CEQVVAVGINCT-----SPRFIHGLILSVRKVTSKPVIIYPN 276 (346)
Q Consensus 234 v~~~~~--~~~~~avGvNC~-----~p~~~~~~l~~l~~~~~~pl~vypN 276 (346)
++.++. ..+++++.+-=- +.+.+...++.+.+. . |+++|=+
T Consensus 86 i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~-~-pi~lYn~ 133 (280)
T PLN02417 86 IHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDM-G-PTIIYNV 133 (280)
T ss_pred HHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhh-C-CEEEEEC
Confidence 776532 257777665321 124556666666665 3 9999944
No 90
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=87.13 E-value=19 Score=34.30 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCCCCEEEEcc-C--------------CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHH
Q 019107 170 HRRRVLILANSGADLIAFET-I--------------PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECA 234 (346)
Q Consensus 170 ~~~~i~~l~~~gvD~i~~ET-~--------------~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av 234 (346)
|.+.++.+.+.++|.|=+-. - .+.+.+..+++++++.- ++|+++-++. +-+.+.+.+
T Consensus 115 ~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~Pv~vKl~~-------~~~~~~~~a 186 (299)
T cd02940 115 WTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV-KIPVIAKLTP-------NITDIREIA 186 (299)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc-CCCeEEECCC-------CchhHHHHH
Confidence 33455566667889885531 1 23556777888887753 6999988753 112466777
Q ss_pred HHhhcCCCceEE-EECCC
Q 019107 235 SIADSCEQVVAV-GINCT 251 (346)
Q Consensus 235 ~~~~~~~~~~av-GvNC~ 251 (346)
+.+.+ .++++| .+|..
T Consensus 187 ~~~~~-~Gadgi~~~Nt~ 203 (299)
T cd02940 187 RAAKE-GGADGVSAINTV 203 (299)
T ss_pred HHHHH-cCCCEEEEeccc
Confidence 76655 467765 45544
No 91
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=87.10 E-value=7.6 Score=35.24 Aligned_cols=97 Identities=24% Similarity=0.154 Sum_probs=58.8
Q ss_pred HHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCccc------CCCCHHHHHHHhhcCCCceEEE
Q 019107 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVV------SGDSILECASIADSCEQVVAVG 247 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~------~G~~~~~av~~~~~~~~~~avG 247 (346)
++.+.+.|+|.+++-+.. +.+...+.+++++.+ .-++++|+.++...... +..++.+.++.+.+ .+++.+-
T Consensus 88 ~~~~~~~Gad~vvigs~~-l~dp~~~~~i~~~~g-~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ga~~ii 164 (234)
T cd04732 88 IERLLDLGVSRVIIGTAA-VKNPELVKELLKEYG-GERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEE-LGVKAII 164 (234)
T ss_pred HHHHHHcCCCEEEECchH-HhChHHHHHHHHHcC-CceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHH-cCCCEEE
Confidence 344555899999987653 445555666666665 34888998875543222 24466677777655 3566665
Q ss_pred ECCCC-----hhhHHHHHHHHhhhcCCcEEE
Q 019107 248 INCTS-----PRFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 248 vNC~~-----p~~~~~~l~~l~~~~~~pl~v 273 (346)
+.... ...-..+++++.+..+.|+++
T Consensus 165 i~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~ 195 (234)
T cd04732 165 YTDISRDGTLSGPNFELYKELAAATGIPVIA 195 (234)
T ss_pred EEeecCCCccCCCCHHHHHHHHHhcCCCEEE
Confidence 55321 112246677777777788655
No 92
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=87.07 E-value=5.7 Score=37.67 Aligned_cols=103 Identities=16% Similarity=0.162 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEE-cc-----CCCHHHHHHHHHHHHHh-CCCCcEEEEEEEcCCCcccCCCCHHHH
Q 019107 161 VSLETLKEFHRRRVLILANSGADLIAF-ET-----IPNKLEAKAYAELLEEE-GITIPAWFSFNSKDGINVVSGDSILEC 233 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~~gvD~i~~-ET-----~~~~~E~~a~~~a~~~~-~~~~pv~is~~~~~~~~l~~G~~~~~a 233 (346)
++.+.++ +.++.+.+.|||.+++ -| .-+.+|=+.+++.+.+. ..+.|+++.. .+.+..++
T Consensus 19 iD~~~l~----~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv---------~~~~~~~~ 85 (292)
T PRK03170 19 VDFAALR----KLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGT---------GSNSTAEA 85 (292)
T ss_pred cCHHHHH----HHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeec---------CCchHHHH
Confidence 5665544 4778888899999873 33 23677877788776653 3258998777 33455666
Q ss_pred HHHhhc--CCCceEEEECCC-----ChhhHHHHHHHHhhhcCCcEEEeeC
Q 019107 234 ASIADS--CEQVVAVGINCT-----SPRFIHGLILSVRKVTSKPVIIYPN 276 (346)
Q Consensus 234 v~~~~~--~~~~~avGvNC~-----~p~~~~~~l~~l~~~~~~pl~vypN 276 (346)
++.++. ..+++++.+-=- +++.+....+.+.+.++.|+++|-+
T Consensus 86 i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~ 135 (292)
T PRK03170 86 IELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNV 135 (292)
T ss_pred HHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 665532 247787776321 2355666677777777899999954
No 93
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=86.94 E-value=28 Score=32.89 Aligned_cols=99 Identities=14% Similarity=0.141 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEE-cc-----CCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHH
Q 019107 161 VSLETLKEFHRRRVLILANSGADLIAF-ET-----IPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECA 234 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~~gvD~i~~-ET-----~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av 234 (346)
++.+.+.+ +++.+.+.|||.|++ -| .-+.+|-+.+++.+.+.. .++++.+ ...++.+++
T Consensus 17 iD~~~~~~----li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~--~~vi~gv---------g~~~~~~ai 81 (279)
T cd00953 17 IDKEKFKK----HCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDIT--DKVIFQV---------GSLNLEESI 81 (279)
T ss_pred cCHHHHHH----HHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHc--CCEEEEe---------CcCCHHHHH
Confidence 67665554 677788899999875 23 226778888888776654 2455444 234567777
Q ss_pred HHhhc--CCCceEEEECCC------ChhhHHHHHHHHhhhcCCcEEEeeC
Q 019107 235 SIADS--CEQVVAVGINCT------SPRFIHGLILSVRKVTSKPVIIYPN 276 (346)
Q Consensus 235 ~~~~~--~~~~~avGvNC~------~p~~~~~~l~~l~~~~~~pl~vypN 276 (346)
+.++. ..|++++.+=-- +++.+....+.+.+ +.|+++|=|
T Consensus 82 ~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~--~lpv~iYn~ 129 (279)
T cd00953 82 ELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS--PYPTFIYNY 129 (279)
T ss_pred HHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh--cCCEEEEeC
Confidence 65532 257888776321 23455566667666 789999944
No 94
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=86.85 E-value=18 Score=33.06 Aligned_cols=100 Identities=20% Similarity=0.236 Sum_probs=61.5
Q ss_pred HHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEE---C
Q 019107 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI---N 249 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGv---N 249 (346)
|++...++|++|++ -|...+ .+++++++.+ +|++- .-.++.++....+ .+++.+++ .
T Consensus 80 ~~~~a~~aGA~Fiv---sP~~~~--~v~~~~~~~~--i~~iP-----------G~~T~~E~~~A~~--~Gad~vklFPa~ 139 (213)
T PRK06552 80 TARLAILAGAQFIV---SPSFNR--ETAKICNLYQ--IPYLP-----------GCMTVTEIVTALE--AGSEIVKLFPGS 139 (213)
T ss_pred HHHHHHHcCCCEEE---CCCCCH--HHHHHHHHcC--CCEEC-----------CcCCHHHHHHHHH--cCCCEEEECCcc
Confidence 56667889999998 455543 4566677755 88882 2246778887764 47889998 3
Q ss_pred CCChhhHHHHHHHHhhhc-CCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeEEeec
Q 019107 250 CTSPRFIHGLILSVRKVT-SKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGC 317 (346)
Q Consensus 250 C~~p~~~~~~l~~l~~~~-~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivGGC 317 (346)
..+|+. ++.++... ..|++ |-.| .++ +.+.+|++.|+..+|..
T Consensus 140 ~~G~~~----ik~l~~~~p~ip~~--atGG---------------I~~----~N~~~~l~aGa~~vavg 183 (213)
T PRK06552 140 TLGPSF----IKAIKGPLPQVNVM--VTGG---------------VNL----DNVKDWFAAGADAVGIG 183 (213)
T ss_pred cCCHHH----HHHHhhhCCCCEEE--EECC---------------CCH----HHHHHHHHCCCcEEEEc
Confidence 334444 44444332 24543 4444 233 33456889998776654
No 95
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=86.51 E-value=4.5 Score=39.30 Aligned_cols=80 Identities=20% Similarity=0.258 Sum_probs=61.5
Q ss_pred HHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcC-----------------CCcccCCCCHHH
Q 019107 170 HRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKD-----------------GINVVSGDSILE 232 (346)
Q Consensus 170 ~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~-----------------~~~l~~G~~~~~ 232 (346)
--.||..|.++|+|++- =|+|+.+.+.++-+..++. ++|++.-|.|+. .|+.-.++-+.+
T Consensus 38 Tv~QI~~L~~aG~dIVR-vtv~~~e~A~A~~~Ik~~~--~vPLVaDiHf~~rla~~~~~~g~~k~RINPGNig~~~~v~~ 114 (361)
T COG0821 38 TVAQIKALERAGCDIVR-VTVPDMEAAEALKEIKQRL--NVPLVADIHFDYRLALEAAECGVDKVRINPGNIGFKDRVRE 114 (361)
T ss_pred HHHHHHHHHHcCCCEEE-EecCCHHHHHHHHHHHHhC--CCCEEEEeeccHHHHHHhhhcCcceEEECCcccCcHHHHHH
Confidence 34589999999999887 4799999998888876665 599999998863 123334456778
Q ss_pred HHHHhhcCCCceEEEECCCC
Q 019107 233 CASIADSCEQVVAVGINCTS 252 (346)
Q Consensus 233 av~~~~~~~~~~avGvNC~~ 252 (346)
.++.+....-|.=||||-.+
T Consensus 115 vVe~Ak~~g~piRIGVN~GS 134 (361)
T COG0821 115 VVEAAKDKGIPIRIGVNAGS 134 (361)
T ss_pred HHHHHHHcCCCEEEecccCc
Confidence 88877665568899999986
No 96
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=86.45 E-value=12 Score=35.03 Aligned_cols=158 Identities=13% Similarity=0.126 Sum_probs=90.7
Q ss_pred cCCChHHHHHHHHHHHHhhcceeeccccc--cCHHhHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCC
Q 019107 50 LVSSPHLVRKVHLDYLDAGANIIITASYQ--ATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSG 127 (346)
Q Consensus 50 ll~~Pe~V~~iH~~yl~AGA~iI~TnTy~--as~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~ 127 (346)
.++.+|.+.++-+.--++|+++|.-..|- +|+..+ .|+..+ +.+.-+++++++
T Consensus 24 ~vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf--~G~G~~--------gl~~L~~~~~~~--------------- 78 (250)
T PRK13397 24 SIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASF--QGLGLQ--------GIRYLHEVCQEF--------------- 78 (250)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCccc--CCCCHH--------HHHHHHHHHHHc---------------
Confidence 47999999999999999999999999995 444433 244422 345555555442
Q ss_pred CCCCCCcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhC
Q 019107 128 RISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEG 207 (346)
Q Consensus 128 ~~~~~~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~ 207 (346)
+ +.+.-++ .+ .++++.+.+ .||++-+-+..... ..+++++.+++
T Consensus 79 ---G--l~~~Tev--------------------~d--------~~~v~~~~e-~vdilqIgs~~~~n--~~LL~~va~tg 122 (250)
T PRK13397 79 ---G--LLSVSEI--------------------MS--------ERQLEEAYD-YLDVIQVGARNMQN--FEFLKTLSHID 122 (250)
T ss_pred ---C--CCEEEee--------------------CC--------HHHHHHHHh-cCCEEEECcccccC--HHHHHHHHccC
Confidence 1 2122211 11 134555555 58888776543322 33455555554
Q ss_pred CCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEEC-CCC--hh-----hHHHHHHHHhhhcCCcEEEee
Q 019107 208 ITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGIN-CTS--PR-----FIHGLILSVRKVTSKPVIIYP 275 (346)
Q Consensus 208 ~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvN-C~~--p~-----~~~~~l~~l~~~~~~pl~vyp 275 (346)
+||+++- +...+-+.+..+++.+........+..- |+. |. .-...+..+++.+..|+++-|
T Consensus 123 --kPVilk~-----G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~ 191 (250)
T PRK13397 123 --KPILFKR-----GLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVDV 191 (250)
T ss_pred --CeEEEeC-----CCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEECC
Confidence 8888764 3233445566677776543223455555 652 21 113555666665677877644
No 97
>PRK15452 putative protease; Provisional
Probab=86.43 E-value=18 Score=36.77 Aligned_cols=73 Identities=10% Similarity=-0.056 Sum_probs=47.8
Q ss_pred HHHHHHHhCCCCEEEEc----------cCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhc--
Q 019107 172 RRVLILANSGADLIAFE----------TIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS-- 239 (346)
Q Consensus 172 ~~i~~l~~~gvD~i~~E----------T~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~-- 239 (346)
+++++.+++|+|.+.+. .-.+.+|++.+++.+++.+ +.+++++.. +.....+..+...++.
T Consensus 14 e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g--~kvyvt~n~-----i~~e~el~~~~~~l~~l~ 86 (443)
T PRK15452 14 KNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALG--KKFYVVVNI-----APHNAKLKTFIRDLEPVI 86 (443)
T ss_pred HHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcC--CEEEEEecC-----cCCHHHHHHHHHHHHHHH
Confidence 35667778999999983 2235688999999898876 889888742 2222234444433321
Q ss_pred CCCceEEEECCC
Q 019107 240 CEQVVAVGINCT 251 (346)
Q Consensus 240 ~~~~~avGvNC~ 251 (346)
..++++|-|.--
T Consensus 87 ~~gvDgvIV~d~ 98 (443)
T PRK15452 87 AMKPDALIMSDP 98 (443)
T ss_pred hCCCCEEEEcCH
Confidence 247898887663
No 98
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=86.25 E-value=22 Score=34.51 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEccCC------------------CHHHHHHHHHHHHHhCCCCcEEEEE
Q 019107 164 ETLKEFHRRRVLILANSGADLIAFETIP------------------NKLEAKAYAELLEEEGITIPAWFSF 216 (346)
Q Consensus 164 ~e~~~~~~~~i~~l~~~gvD~i~~ET~~------------------~~~E~~a~~~a~~~~~~~~pv~is~ 216 (346)
++..+||+++++ .|+-+|+.|... .+...+.+.+++++.| ..+++.+
T Consensus 33 ~~~~~~y~~rA~----gg~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~l~~~vh~~G--~~~~~QL 97 (336)
T cd02932 33 DWHLVHYGSRAL----GGAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKRIVDFIHSQG--AKIGIQL 97 (336)
T ss_pred HHHHHHHHHHHc----CCCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHHHHHHHHhcC--CcEEEEc
Confidence 788899988765 688888877321 1345555667777765 6677775
No 99
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=86.20 E-value=3.6 Score=36.15 Aligned_cols=64 Identities=19% Similarity=0.198 Sum_probs=43.6
Q ss_pred HHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECC
Q 019107 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC 250 (346)
++..+++|+|.|.+.+| ++++++.+++.+++.+.. +.+.++ .|-++..+.+... .+++.|++-+
T Consensus 93 ~~ea~~~g~d~I~lD~~-~~~~~~~~v~~l~~~~~~--v~ie~S--------GGI~~~ni~~ya~--~gvD~isvg~ 156 (169)
T PF01729_consen 93 AEEALEAGADIIMLDNM-SPEDLKEAVEELRELNPR--VKIEAS--------GGITLENIAEYAK--TGVDVISVGS 156 (169)
T ss_dssp HHHHHHTT-SEEEEES--CHHHHHHHHHHHHHHTTT--SEEEEE--------SSSSTTTHHHHHH--TT-SEEEECH
T ss_pred HHHHHHhCCCEEEecCc-CHHHHHHHHHHHhhcCCc--EEEEEE--------CCCCHHHHHHHHh--cCCCEEEcCh
Confidence 34455689999999998 789999999988887633 444442 4566666666654 4788888865
No 100
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=86.13 E-value=13 Score=36.28 Aligned_cols=137 Identities=15% Similarity=0.103 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEccCC----CHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCC
Q 019107 166 LKEFHRRRVLILANSGADLIAFETIP----NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCE 241 (346)
Q Consensus 166 ~~~~~~~~i~~l~~~gvD~i~~ET~~----~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~ 241 (346)
....-++.++...+.|+.+.+= +.. +.+. ..-.+.+++...+.|++.++.+...... +-+.+..+++.+. .
T Consensus 68 ~~~in~~La~~a~~~g~~~~~G-s~~~~~~~~~~-~~~~~~vr~~~~~~p~i~nl~~~~~~~~-~~~~~~~~i~~i~--a 142 (333)
T TIGR02151 68 AGKINRNLARAARELGIPMGVG-SQRAALKDPET-ADTFEVVREEAPNGPLIANIGAPQLVEG-GPEEAQEAIDMIE--A 142 (333)
T ss_pred HHHHHHHHHHHHHHcCCCeEEc-CchhhccChhh-HhHHHHHHHhCCCCcEEeecCchhhccc-cHHHHHHHHHHhc--C
Confidence 4445566777777888776652 222 3322 2223566774457999999876432210 1223445555553 3
Q ss_pred CceEEEECCCC----hh------hHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCC
Q 019107 242 QVVAVGINCTS----PR------FIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGA 311 (346)
Q Consensus 242 ~~~avGvNC~~----p~------~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 311 (346)
....+++||.+ |+ .....++.+++..+.|+++.-+... .+ .+.++.+.+.|+
T Consensus 143 dal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g--------------~~----~~~a~~L~~aGv 204 (333)
T TIGR02151 143 DALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIVKEVGFG--------------IS----KEVAKLLADAGV 204 (333)
T ss_pred CCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCC--------------CC----HHHHHHHHHcCC
Confidence 56778888753 21 2335667777767899998844210 11 244556777786
Q ss_pred eE--EeecCCCchHHH
Q 019107 312 SL--FGGCCRTTPNTI 325 (346)
Q Consensus 312 ~i--vGGCCGt~P~hI 325 (346)
.. |+|-.||+-..|
T Consensus 205 d~I~Vsg~gGt~~~~i 220 (333)
T TIGR02151 205 SAIDVAGAGGTSWAQV 220 (333)
T ss_pred CEEEECCCCCCcccch
Confidence 55 566666653333
No 101
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=86.07 E-value=27 Score=32.46 Aligned_cols=93 Identities=9% Similarity=0.020 Sum_probs=56.6
Q ss_pred HHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCC---------cccCCCCHHHHHHHhhc--CC
Q 019107 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGI---------NVVSGDSILECASIADS--CE 241 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~---------~l~~G~~~~~av~~~~~--~~ 241 (346)
-++.|.++||+.+-+|-.. |....++++++.+ .||+.-+-..... ..++-..+.++++.... ..
T Consensus 94 ~~~~l~~aGa~gv~iED~~---~~~~~i~ai~~a~--i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~A 168 (240)
T cd06556 94 LAKTFMRAGAAGVKIEGGE---WHIETLQMLTAAA--VPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPA 168 (240)
T ss_pred HHHHHHHcCCcEEEEcCcH---HHHHHHHHHHHcC--CeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHc
Confidence 3556777999999999863 5555677777755 6666554332111 11122345666665432 25
Q ss_pred CceEEEECCCChhhHHHHHHHHhhhcCCcEEEe
Q 019107 242 QVVAVGINCTSPRFIHGLILSVRKVTSKPVIIY 274 (346)
Q Consensus 242 ~~~avGvNC~~p~~~~~~l~~l~~~~~~pl~vy 274 (346)
|++++-+-|..++.+. ++.+..+.|++..
T Consensus 169 GAd~i~~e~~~~e~~~----~i~~~~~~P~~~~ 197 (240)
T cd06556 169 GADLIVMECVPVELAK----QITEALAIPLAGI 197 (240)
T ss_pred CCCEEEEcCCCHHHHH----HHHHhCCCCEEEE
Confidence 8899999988544444 4444467897664
No 102
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=86.03 E-value=4.9 Score=36.43 Aligned_cols=88 Identities=19% Similarity=0.183 Sum_probs=54.5
Q ss_pred HHHHHHHhCCCCEEEEccC----CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEE
Q 019107 172 RRVLILANSGADLIAFETI----PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVG 247 (346)
Q Consensus 172 ~~i~~l~~~gvD~i~~ET~----~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avG 247 (346)
++++.+.++|+|++++-.- |+..++..+++.+++. ...|+++.. .+..++.... . .+++.++
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v-----------~t~ee~~~a~-~-~G~d~i~ 144 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADC-----------STLEEGLAAQ-K-LGFDFIG 144 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeC-----------CCHHHHHHHH-H-cCCCEEE
Confidence 4677788899998876432 2225667778888873 247777533 2556664433 3 4788888
Q ss_pred ECCC---C-----hhhHHHHHHHHhhhcCCcEEE
Q 019107 248 INCT---S-----PRFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 248 vNC~---~-----p~~~~~~l~~l~~~~~~pl~v 273 (346)
+|-. . ......+++++++..+.|+++
T Consensus 145 ~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia 178 (221)
T PRK01130 145 TTLSGYTEETKKPEEPDFALLKELLKAVGCPVIA 178 (221)
T ss_pred cCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEE
Confidence 7531 0 122346777777777788765
No 103
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=85.98 E-value=11 Score=36.79 Aligned_cols=89 Identities=13% Similarity=0.101 Sum_probs=58.2
Q ss_pred HHHHHHHhCCC--CEEEEc-cCCCHHHHHHHHHHHHHhCCCCcEEEE-EEEcCCCcccCCCCHHHHHHHhhcCCCceEE-
Q 019107 172 RRVLILANSGA--DLIAFE-TIPNKLEAKAYAELLEEEGITIPAWFS-FNSKDGINVVSGDSILECASIADSCEQVVAV- 246 (346)
Q Consensus 172 ~~i~~l~~~gv--D~i~~E-T~~~~~E~~a~~~a~~~~~~~~pv~is-~~~~~~~~l~~G~~~~~av~~~~~~~~~~av- 246 (346)
+++..|.++|+ |+|.+- |-++...+..+++.+++.-.+.||++. +. +.+++....+ .+++++
T Consensus 100 ~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~-----------t~e~a~~l~~--aGad~i~ 166 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG-----------TPEAVRELEN--AGADATK 166 (326)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecC-----------CHHHHHHHHH--cCcCEEE
Confidence 57888999965 999985 556677777777777775435777763 32 5566666554 467776
Q ss_pred -----EECCCC--------hhhHHHHHHHHhhhcCCcEEE
Q 019107 247 -----GINCTS--------PRFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 247 -----GvNC~~--------p~~~~~~l~~l~~~~~~pl~v 273 (346)
|=||.. |++-.+++..+.+..+.|+++
T Consensus 167 vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIA 206 (326)
T PRK05458 167 VGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIA 206 (326)
T ss_pred ECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEE
Confidence 566742 333445567766666788664
No 104
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=85.75 E-value=14 Score=40.19 Aligned_cols=94 Identities=18% Similarity=0.203 Sum_probs=66.5
Q ss_pred HHhCCCCEE-EEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCC---CHH---HHHHHhhcCCCceEEEEC
Q 019107 177 LANSGADLI-AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGD---SIL---ECASIADSCEQVVAVGIN 249 (346)
Q Consensus 177 l~~~gvD~i-~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~---~~~---~av~~~~~~~~~~avGvN 249 (346)
..++|+|+| +|..+..++.++.+++++++.+ +=+=.+++. ...-|..+. ++. ..++.+.+ .++-.+||-
T Consensus 639 aa~~GIDvFRiFDsLNwv~~M~vaidAV~e~g--kv~EatiCY-TGDildp~r~kY~L~YY~~lA~el~~-~GaHIlaIK 714 (1149)
T COG1038 639 AAKSGIDVFRIFDSLNWVEQMRVAIDAVREAG--KVAEATICY-TGDILDPGRKKYTLDYYVKLAKELEK-AGAHILAIK 714 (1149)
T ss_pred HHhcCccEEEeehhhcchhhhhhHHHHHHhcC--CeEEEEEEe-ccccCCCCcccccHHHHHHHHHHHHh-cCCcEEEeh
Confidence 456999998 7889999999999999999987 444444433 222232332 232 44555544 467778887
Q ss_pred CC----ChhhHHHHHHHHhhhcCCcEEEe
Q 019107 250 CT----SPRFIHGLILSVRKVTSKPVIIY 274 (346)
Q Consensus 250 C~----~p~~~~~~l~~l~~~~~~pl~vy 274 (346)
=. .|.....|+..|+...+.|+-+.
T Consensus 715 DMAGLLKP~AA~~Li~aLr~~~dlPIHlH 743 (1149)
T COG1038 715 DMAGLLKPAAAYRLISALRETVDLPIHLH 743 (1149)
T ss_pred hhhhccCHHHHHHHHHHHHHhcCCceEEe
Confidence 64 48999999999999999998764
No 105
>PRK12677 xylose isomerase; Provisional
Probab=85.73 E-value=40 Score=33.56 Aligned_cols=87 Identities=16% Similarity=0.184 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHHHHh----CC--CCEEEEccCCCH-------HHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCC
Q 019107 161 VSLETLKEFHRRRVLILAN----SG--ADLIAFETIPNK-------LEAKAYAELLEEEGITIPAWFSFNSKDGINVVSG 227 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~----~g--vD~i~~ET~~~~-------~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G 227 (346)
.+.++..+.+.+-++.+.+ .| |. |++|..|.. .....++..+++.+ .|-.+.++++-.-.+.-|
T Consensus 146 ~d~~~a~~~~~eaL~~l~~~A~~~G~gV~-laIEpkp~ep~~~~~l~t~~~al~li~~lg--~~~~vGv~lD~gH~~m~g 222 (384)
T PRK12677 146 KDVRAALDRYREAIDLLAAYVKDQGYDLR-FALEPKPNEPRGDILLPTVGHALAFIATLE--HPEMVGLNPEVGHEQMAG 222 (384)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCcE-EEEccCCCCCCCCeeeCCHHHHHHHHHHhC--CCccEEEeeechHHHhcC
Confidence 3667777777766655543 33 54 677987541 12333444455544 343344444444444678
Q ss_pred CCHHHHHHHhhcCCCceEEEECC
Q 019107 228 DSILECASIADSCEQVVAVGINC 250 (346)
Q Consensus 228 ~~~~~av~~~~~~~~~~avGvNC 250 (346)
+++.+++........+..|=+|=
T Consensus 223 ~n~~~~i~~~l~~~kL~HvHlnD 245 (384)
T PRK12677 223 LNFTHGIAQALWAGKLFHIDLNG 245 (384)
T ss_pred CCHHHHHHHHHhCCcEEEEEecC
Confidence 88888776543223456666664
No 106
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=85.67 E-value=20 Score=36.79 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhCCCCEEEEccC---CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHh
Q 019107 167 KEFHRRRVLILANSGADLIAFETI---PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIA 237 (346)
Q Consensus 167 ~~~~~~~i~~l~~~gvD~i~~ET~---~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~ 237 (346)
.+||.+.++.+.+.|+|.|.+-.+ -.+.++..++.++++.. ++|+ .|.+.++. |..++..+..+
T Consensus 162 ~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~~-~~pi--~~H~Hnt~----GlA~An~laAi 228 (468)
T PRK12581 162 LNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAMT-NLPL--IVHTHATS----GISQMTYLAAV 228 (468)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhcc-CCeE--EEEeCCCC----ccHHHHHHHHH
Confidence 467888899999999999987643 37778999999998743 4554 55555542 43444444444
No 107
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=85.11 E-value=33 Score=39.16 Aligned_cols=99 Identities=17% Similarity=0.160 Sum_probs=68.7
Q ss_pred HHHHHhCCCCEE-EEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCC--cccCCCCHH---HHHHHhhcCCCceEEE
Q 019107 174 VLILANSGADLI-AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGI--NVVSGDSIL---ECASIADSCEQVVAVG 247 (346)
Q Consensus 174 i~~l~~~gvD~i-~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~--~l~~G~~~~---~av~~~~~~~~~~avG 247 (346)
++...+.|+|+| +|..+.++..++.+++++++.| +-+-.+++...+- -.+.-.+++ +.++.+.+ .+++.|.
T Consensus 631 ~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g--~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~-~Gad~I~ 707 (1143)
T TIGR01235 631 VKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAG--KVVEAAICYTGDILDPARPKYDLKYYTNLAVELEK-AGAHILG 707 (1143)
T ss_pred HHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcC--CEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHH-cCCCEEE
Confidence 444667999999 6889999999999999999988 4444444332111 011223444 45555544 4778777
Q ss_pred ECCC----ChhhHHHHHHHHhhhcCCcEEEee
Q 019107 248 INCT----SPRFIHGLILSVRKVTSKPVIIYP 275 (346)
Q Consensus 248 vNC~----~p~~~~~~l~~l~~~~~~pl~vyp 275 (346)
+-=+ .|..+..+++.+++..+.|+.+.-
T Consensus 708 ikDt~Gll~P~~~~~Lv~~lk~~~~~pi~~H~ 739 (1143)
T TIGR01235 708 IKDMAGLLKPAAAKLLIKALREKTDLPIHFHT 739 (1143)
T ss_pred ECCCcCCcCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 7654 499999999999988788887764
No 108
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=85.05 E-value=18 Score=35.43 Aligned_cols=125 Identities=16% Similarity=0.177 Sum_probs=74.6
Q ss_pred HHhCCCCEEEEccC--CC-H--------HHHHHHHHHHHHhCCCCcEEEEE-EEcCCCcccCC--------CCHHHHHHH
Q 019107 177 LANSGADLIAFETI--PN-K--------LEAKAYAELLEEEGITIPAWFSF-NSKDGINVVSG--------DSILECASI 236 (346)
Q Consensus 177 l~~~gvD~i~~ET~--~~-~--------~E~~a~~~a~~~~~~~~pv~is~-~~~~~~~l~~G--------~~~~~av~~ 236 (346)
+.+.|+|.+-+=.+ |+ . ..+..+.+.+++.+ +|+++-+ +........+. +.+..+++.
T Consensus 115 a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~g--iPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~ 192 (340)
T PRK12858 115 IKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRAND--IPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEE 192 (340)
T ss_pred HHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcC--CceEEEEeccCCCccccccccccccCHHHHHHHHHH
Confidence 55678888866544 33 1 12344445566655 9999975 33333332222 345556665
Q ss_pred hhc-CCCceEEEECCC-Ch---------------hhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHH
Q 019107 237 ADS-CEQVVAVGINCT-SP---------------RFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDF 299 (346)
Q Consensus 237 ~~~-~~~~~avGvNC~-~p---------------~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~ 299 (346)
+.+ ..+++.+=+.-. .+ +.....++++...+..|+++- .+| .+.+.|
T Consensus 193 ~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvl-sgG---------------~~~~~f 256 (340)
T PRK12858 193 FSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFL-SAG---------------VSPELF 256 (340)
T ss_pred HhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEE-CCC---------------CCHHHH
Confidence 542 357888888765 22 122245566666667887653 222 235668
Q ss_pred HHHHHHHHHcCCeEEeecCC
Q 019107 300 VSYIGKWRDAGASLFGGCCR 319 (346)
Q Consensus 300 ~~~~~~~~~~G~~ivGGCCG 319 (346)
.+.++...+.|+++-|=+||
T Consensus 257 ~~~l~~A~~aGa~f~Gvl~G 276 (340)
T PRK12858 257 RRTLEFACEAGADFSGVLCG 276 (340)
T ss_pred HHHHHHHHHcCCCccchhhh
Confidence 88888888889988888888
No 109
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=84.89 E-value=24 Score=34.55 Aligned_cols=158 Identities=18% Similarity=0.228 Sum_probs=86.4
Q ss_pred cCCChHHHHHHHHHHHHhhcceeeccccc--cCHHhHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCC
Q 019107 50 LVSSPHLVRKVHLDYLDAGANIIITASYQ--ATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSG 127 (346)
Q Consensus 50 ll~~Pe~V~~iH~~yl~AGA~iI~TnTy~--as~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~ 127 (346)
.+++++.+.++=+..-++|++++....|- +|+..+ .|+. ..+.++-+++++++
T Consensus 102 siEs~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf--~G~g--------~~gL~~L~~~~~~~--------------- 156 (335)
T PRK08673 102 SVESEEQILEIARAVKEAGAQILRGGAFKPRTSPYSF--QGLG--------EEGLKLLAEAREET--------------- 156 (335)
T ss_pred ccCCHHHHHHHHHHHHHhchhhccCcEecCCCCCccc--cccc--------HHHHHHHHHHHHHc---------------
Confidence 36889999999999999999999887773 444332 2333 34455666665542
Q ss_pred CCCCCCcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccC--CCHHHHHHHHHHHHH
Q 019107 128 RISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETI--PNKLEAKAYAELLEE 205 (346)
Q Consensus 128 ~~~~~~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~--~~~~E~~a~~~a~~~ 205 (346)
+-+ +.-++ .+. ++++.+.+. +|++-+-.. .+. ..++.+.+
T Consensus 157 ---Gl~--v~tev--------------------~d~--------~~~~~l~~~-vd~lqIgAr~~~N~----~LL~~va~ 198 (335)
T PRK08673 157 ---GLP--IVTEV--------------------MDP--------RDVELVAEY-VDILQIGARNMQNF----DLLKEVGK 198 (335)
T ss_pred ---CCc--EEEee--------------------CCH--------HHHHHHHHh-CCeEEECcccccCH----HHHHHHHc
Confidence 212 22211 121 234444444 788876543 332 23334444
Q ss_pred hCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECC-C--C-h----hhHHHHHHHHhhhcCCcEEEeeCC
Q 019107 206 EGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC-T--S-P----RFIHGLILSVRKVTSKPVIIYPNS 277 (346)
Q Consensus 206 ~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC-~--~-p----~~~~~~l~~l~~~~~~pl~vypN~ 277 (346)
++ +||+++=-. -.+=+.+..+++.+........+.+-| + - + ..-...+..+++.+..|++++|+-
T Consensus 199 ~~--kPViLk~G~-----~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~~lPVi~d~sH 271 (335)
T PRK08673 199 TN--KPVLLKRGM-----SATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLTHLPVIVDPSH 271 (335)
T ss_pred CC--CcEEEeCCC-----CCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhcCCCEEEeCCC
Confidence 44 888866411 011123455666664433345667776 2 1 1 122444556666567888888863
No 110
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=84.82 E-value=13 Score=35.90 Aligned_cols=60 Identities=13% Similarity=0.102 Sum_probs=39.6
Q ss_pred CCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCCh------------hhHHHHHHHHhhhcCCcEEEe
Q 019107 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSP------------RFIHGLILSVRKVTSKPVIIY 274 (346)
Q Consensus 209 ~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~p------------~~~~~~l~~l~~~~~~pl~vy 274 (346)
+.|+++|+...+.. ...+.++.++....++++=+|++.| +.+..+++.+++..++|+++.
T Consensus 92 ~~pvI~Si~G~~~~------~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~~~Pv~vK 163 (310)
T PRK02506 92 NKPHFLSVVGLSPE------ETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYFTKPLGVK 163 (310)
T ss_pred CCCEEEEEEeCcHH------HHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhcCCccEEe
Confidence 48999998543221 2234555554422388999998754 556777888887778888764
No 111
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=84.65 E-value=43 Score=32.96 Aligned_cols=68 Identities=15% Similarity=0.094 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEc-cCC--CHHHHHHHHHHHHHhCCCCcE-EEEEEEcCCCcccCCCCHHHHHHH
Q 019107 161 VSLETLKEFHRRRVLILANSGADLIAFE-TIP--NKLEAKAYAELLEEEGITIPA-WFSFNSKDGINVVSGDSILECASI 236 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~~gvD~i~~E-T~~--~~~E~~a~~~a~~~~~~~~pv-~is~~~~~~~~l~~G~~~~~av~~ 236 (346)
.+.+.+.+ .++.+.+.|+|-|.+- |+. ++.++..+++.+++. .|. -+.|.+.++. |..++.++..
T Consensus 194 ~~~~~l~~----~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~---~~~~~i~~H~Hnd~----GlA~AN~lAA 262 (347)
T PLN02746 194 VPPSKVAY----VAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAV---VPVDKLAVHFHDTY----GQALANILVS 262 (347)
T ss_pred CCHHHHHH----HHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHh---CCCCeEEEEECCCC----ChHHHHHHHH
Confidence 35555554 5556777899988654 443 677999999988874 232 3677777664 5566777766
Q ss_pred hhc
Q 019107 237 ADS 239 (346)
Q Consensus 237 ~~~ 239 (346)
++.
T Consensus 263 ~~a 265 (347)
T PLN02746 263 LQM 265 (347)
T ss_pred HHh
Confidence 654
No 112
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=84.61 E-value=44 Score=33.03 Aligned_cols=74 Identities=14% Similarity=0.271 Sum_probs=49.0
Q ss_pred CCceEEEECCCC---------h-----------------hhHHHHHHHHhhhc--CCcEEEeeCCCCccccccccccccC
Q 019107 241 EQVVAVGINCTS---------P-----------------RFIHGLILSVRKVT--SKPVIIYPNSGETYNAELKKWVEST 292 (346)
Q Consensus 241 ~~~~avGvNC~~---------p-----------------~~~~~~l~~l~~~~--~~pl~vypN~g~~~~~~~~~~~~~~ 292 (346)
.+.++|-|||++ | ..+..+++.+++.. +.|+++.-|.... .++....
T Consensus 156 aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~-----~~~~~~~ 230 (361)
T cd04747 156 LGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQ-----QDYTARL 230 (361)
T ss_pred cCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccc-----cccccCC
Confidence 589999999987 2 23445666777664 4688888774211 1221111
Q ss_pred CCChHHHHHHHHHHHHcCCeEEeecCC
Q 019107 293 GVRDEDFVSYIGKWRDAGASLFGGCCR 319 (346)
Q Consensus 293 ~~~~~~~~~~~~~~~~~G~~ivGGCCG 319 (346)
..+++++.+.++...+.|+.+|=..||
T Consensus 231 g~~~~e~~~~~~~l~~~gvd~i~vs~g 257 (361)
T cd04747 231 ADTPDELEALLAPLVDAGVDIFHCSTR 257 (361)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCC
Confidence 356788888888888889998877666
No 113
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=84.49 E-value=20 Score=33.71 Aligned_cols=157 Identities=15% Similarity=0.134 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEE-----EEccCCC--HHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHH
Q 019107 162 SLETLKEFHRRRVLILANSGADLI-----AFETIPN--KLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECA 234 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~~~gvD~i-----~~ET~~~--~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av 234 (346)
+.+.+.+|-.+.++.+.+ .|.++ +||.... +.+++..++.+++.+ .+|+.=+-..|=+ .+...++
T Consensus 35 ~~~~~~~f~~~ii~~l~~-~v~~vK~g~~lf~~~G~~gi~~l~~~~~~~~~~g--~~VilD~K~~DIp-----nTv~~~a 106 (261)
T TIGR02127 35 SAAGLQAFCLRIIDATAE-YAAVVKPQVAFFERFGSEGFKALEEVIAHARSLG--LPVLADVKRGDIG-----STASAYA 106 (261)
T ss_pred hHHHHHHHHHHHHHhcCC-cceEEecCHHHHHhcCHHHHHHHHHHHHHHHHCC--CeEEEEeeccChH-----HHHHHHH
Confidence 456677888887777753 34333 4555432 346666667778765 7888776554433 3344555
Q ss_pred HHhhcCCCceEEEECCC-ChhhHHHHHHHHhhhcCCcEE--E-eeCCC--CccccccccccccCCCC-hHHHHHHHHHHH
Q 019107 235 SIADSCEQVVAVGINCT-SPRFIHGLILSVRKVTSKPVI--I-YPNSG--ETYNAELKKWVESTGVR-DEDFVSYIGKWR 307 (346)
Q Consensus 235 ~~~~~~~~~~avGvNC~-~p~~~~~~l~~l~~~~~~pl~--v-ypN~g--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 307 (346)
+.+....+++++-+|+. +.+.+.++++...+. ..-+. + .-|.| .+.+ .......+ .+...+.++.|.
T Consensus 107 ~a~~~~~g~D~vTvh~~~G~d~l~~~~~~~~~~-~~~v~VlvlTSnp~~~~lq~-----~~~~~~~~~~~~V~~~a~~~~ 180 (261)
T TIGR02127 107 KAWLGHLHADALTVSPYLGLDSLRPFLEYARAN-GAGIFVLVKTSNPGGADLQD-----LRVSDGRTVYEEVAELAGELN 180 (261)
T ss_pred HHHHhhcCCCEEEECCcCCHHHHHHHHHHHhhc-CCEEEEEEeCCCCCHHHHhh-----hhccCCCCHHHHHHHHHHHhc
Confidence 55432257899999996 677787777765432 22222 2 23322 1111 00000001 234566666675
Q ss_pred Hc--CCeEEeecCC-CchHHHHHHHHHH
Q 019107 308 DA--GASLFGGCCR-TTPNTIKAISRVL 332 (346)
Q Consensus 308 ~~--G~~ivGGCCG-t~P~hI~al~~~~ 332 (346)
+. |...+|-=|| |.|+.++.|++.+
T Consensus 181 ~~~~~~g~~GvV~gAT~p~e~~~iR~~~ 208 (261)
T TIGR02127 181 ESPGDCSSVGAVVGATSPGDLLRLRIEM 208 (261)
T ss_pred cccCcCCceEEEECCCCHHHHHHHHHhC
Confidence 43 1123565555 5689999999886
No 114
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=84.29 E-value=43 Score=34.15 Aligned_cols=98 Identities=13% Similarity=0.157 Sum_probs=63.8
Q ss_pred HHHHHhCCCCEEE-EccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCC-
Q 019107 174 VLILANSGADLIA-FETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT- 251 (346)
Q Consensus 174 i~~l~~~gvD~i~-~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~- 251 (346)
++...++|+|.|- +-.+++...++.+++.+++.| +.+-++++...... -+-+-+.+.++.+.+ .+++.|.+-=+
T Consensus 102 v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G--~~v~~~i~~t~~p~-~~~~~~~~~a~~l~~-~Gad~I~i~Dt~ 177 (448)
T PRK12331 102 VQKSVENGIDIIRIFDALNDVRNLETAVKATKKAG--GHAQVAISYTTSPV-HTIDYFVKLAKEMQE-MGADSICIKDMA 177 (448)
T ss_pred HHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcC--CeEEEEEEeecCCC-CCHHHHHHHHHHHHH-cCCCEEEEcCCC
Confidence 4556678999874 445566677777889899877 55444444333221 122223455555544 46777766543
Q ss_pred ---ChhhHHHHHHHHhhhcCCcEEEee
Q 019107 252 ---SPRFIHGLILSVRKVTSKPVIIYP 275 (346)
Q Consensus 252 ---~p~~~~~~l~~l~~~~~~pl~vyp 275 (346)
.|..+..+++.+++..+.|+.+.-
T Consensus 178 G~l~P~~v~~lv~alk~~~~~pi~~H~ 204 (448)
T PRK12331 178 GILTPYVAYELVKRIKEAVTVPLEVHT 204 (448)
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 499999999999988788887754
No 115
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=84.17 E-value=13 Score=34.24 Aligned_cols=97 Identities=10% Similarity=-0.024 Sum_probs=62.3
Q ss_pred HHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcc------cCCCCHHHHHHHhhcCCCceEEE
Q 019107 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINV------VSGDSILECASIADSCEQVVAVG 247 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l------~~G~~~~~av~~~~~~~~~~avG 247 (346)
++.+.+.|+|-+++-|.. +++...+.++.++++ +. +++|+...++.-. .++.++.+.++.+.. .++..+-
T Consensus 91 v~~~l~~Ga~kvvigt~a-~~~~~~l~~~~~~fg-~~-ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~-~g~~~ii 166 (234)
T PRK13587 91 IMDYFAAGINYCIVGTKG-IQDTDWLKEMAHTFP-GR-IYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSD-IPLGGII 166 (234)
T ss_pred HHHHHHCCCCEEEECchH-hcCHHHHHHHHHHcC-CC-EEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHH-cCCCEEE
Confidence 344556899999987642 233344555566665 34 8889987654211 356678888888865 4667777
Q ss_pred ECCCChhh-----HHHHHHHHhhhcCCcEEEe
Q 019107 248 INCTSPRF-----IHGLILSVRKVTSKPVIIY 274 (346)
Q Consensus 248 vNC~~p~~-----~~~~l~~l~~~~~~pl~vy 274 (346)
++..+.+- -..+++++.+..+.|+++.
T Consensus 167 ~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~ 198 (234)
T PRK13587 167 YTDIAKDGKMSGPNFELTGQLVKATTIPVIAS 198 (234)
T ss_pred EecccCcCCCCccCHHHHHHHHHhCCCCEEEe
Confidence 88764322 2456777776667887664
No 116
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=84.11 E-value=16 Score=33.16 Aligned_cols=97 Identities=24% Similarity=0.176 Sum_probs=54.5
Q ss_pred HHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCccc------CCCCHHHHHHHhhcCCCceEEE
Q 019107 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVV------SGDSILECASIADSCEQVVAVG 247 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~------~G~~~~~av~~~~~~~~~~avG 247 (346)
++.+.+.|+|.+++-|..- .+...+.+++++.+ ..++++|+.++...-.. ...++.+.++.+.+ .+++.+-
T Consensus 87 ~~~~~~~Ga~~vvlgs~~l-~d~~~~~~~~~~~g-~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~-~g~~~ii 163 (230)
T TIGR00007 87 VEKLLDLGVDRVIIGTAAV-ENPDLVKELLKEYG-PERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEE-LGLEGII 163 (230)
T ss_pred HHHHHHcCCCEEEEChHHh-hCHHHHHHHHHHhC-CCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHh-CCCCEEE
Confidence 4445558999988765432 33455666677765 35688888876432111 23456677776655 3555444
Q ss_pred ---ECCCCh--hhHHHHHHHHhhhcCCcEEE
Q 019107 248 ---INCTSP--RFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 248 ---vNC~~p--~~~~~~l~~l~~~~~~pl~v 273 (346)
++.... ..-..+++++.+..+.|+++
T Consensus 164 ~~~~~~~g~~~g~~~~~i~~i~~~~~ipvia 194 (230)
T TIGR00007 164 YTDISRDGTLSGPNFELTKELVKAVNVPVIA 194 (230)
T ss_pred EEeecCCCCcCCCCHHHHHHHHHhCCCCEEE
Confidence 333211 11145666666666777654
No 117
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=83.93 E-value=9.8 Score=32.52 Aligned_cols=103 Identities=19% Similarity=0.133 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhCCCCEEEEccCCCHHH-HH----HHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCC
Q 019107 168 EFHRRRVLILANSGADLIAFETIPNKLE-AK----AYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQ 242 (346)
Q Consensus 168 ~~~~~~i~~l~~~gvD~i~~ET~~~~~E-~~----a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~ 242 (346)
+.+.+.++.+.+.|+|++.+++...-.. .. ..++...+. .+.|+++++.+.+... .+..++..+.. .+
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~a~~~~~-~g 84 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAE-TDLPLGVQLAINDAAA-----AVDIAAAAARA-AG 84 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhh-cCCcEEEEEccCCchh-----hhhHHHHHHHH-cC
Confidence 3445567778889999999887542211 10 112223332 2589999987644221 11122334433 47
Q ss_pred ceEEEECCCCh---hhHHHHHHHHhhhc-CCcEEEeeCC
Q 019107 243 VVAVGINCTSP---RFIHGLILSVRKVT-SKPVIIYPNS 277 (346)
Q Consensus 243 ~~avGvNC~~p---~~~~~~l~~l~~~~-~~pl~vypN~ 277 (346)
+++|-+|+.++ +.....++.+++.. +.|+++.-+.
T Consensus 85 ~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~ 123 (200)
T cd04722 85 ADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSP 123 (200)
T ss_pred CCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 89999999864 34666777777665 6777666543
No 118
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=83.88 E-value=19 Score=34.96 Aligned_cols=60 Identities=20% Similarity=0.282 Sum_probs=40.1
Q ss_pred CCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCC----h--------hhHHHHHHHHhhhcCCcEEEee
Q 019107 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTS----P--------RFIHGLILSVRKVTSKPVIIYP 275 (346)
Q Consensus 209 ~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~----p--------~~~~~~l~~l~~~~~~pl~vyp 275 (346)
+.|+++|+... +-+.+.++++.++. .++++|=+||++ + +.+..+++.+++..+.|+++.-
T Consensus 99 ~~pvi~si~g~------~~~~~~~~a~~~~~-~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl 170 (325)
T cd04739 99 SIPVIASLNGV------SAGGWVDYARQIEE-AGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKL 170 (325)
T ss_pred CCeEEEEeCCC------CHHHHHHHHHHHHh-cCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEc
Confidence 48999998321 11234566666655 468999999863 2 2345677788777789998873
No 119
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=83.67 E-value=11 Score=34.32 Aligned_cols=104 Identities=16% Similarity=0.050 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEE
Q 019107 168 EFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVG 247 (346)
Q Consensus 168 ~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avG 247 (346)
+.|.+.++.+.+.|+|++=+|--...+.... ....+.. +.++++|+.- -..+++-..+.+.++.+.. .+++.+=
T Consensus 75 ~~~~~ll~~~~~~~~d~iDiE~~~~~~~~~~-~~~~~~~--~~~iI~S~H~--f~~tp~~~~l~~~~~~~~~-~gadivK 148 (224)
T PF01487_consen 75 EEYLELLERAIRLGPDYIDIELDLFPDDLKS-RLAARKG--GTKIILSYHD--FEKTPSWEELIELLEEMQE-LGADIVK 148 (224)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEGGCCHHHHHH-HHHHHHT--TSEEEEEEEE--SS---THHHHHHHHHHHHH-TT-SEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEcccchhHHHH-HHHHhhC--CCeEEEEecc--CCCCCCHHHHHHHHHHHHh-cCCCeEE
Confidence 3455566667777899999997634333333 3334443 5999999972 2222233335666666654 4677766
Q ss_pred ECCC--ChhhHHHHHHHHhhh---cCCcEEEeeCC
Q 019107 248 INCT--SPRFIHGLILSVRKV---TSKPVIIYPNS 277 (346)
Q Consensus 248 vNC~--~p~~~~~~l~~l~~~---~~~pl~vypN~ 277 (346)
+-|. +++....+++..... .+.|+++++-+
T Consensus 149 ia~~~~~~~D~~~l~~~~~~~~~~~~~p~i~~~MG 183 (224)
T PF01487_consen 149 IAVMANSPEDVLRLLRFTKEFREEPDIPVIAISMG 183 (224)
T ss_dssp EEEE-SSHHHHHHHHHHHHHHHHHTSSEEEEEEET
T ss_pred EEeccCCHHHHHHHHHHHHHHhhccCCcEEEEEcC
Confidence 6664 566666666544443 36899988743
No 120
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=83.53 E-value=11 Score=37.02 Aligned_cols=140 Identities=23% Similarity=0.266 Sum_probs=82.6
Q ss_pred CChHHHHHHHHHHHHhhcceeecc-c-cccCHHhHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCC
Q 019107 52 SSPHLVRKVHLDYLDAGANIIITA-S-YQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRI 129 (346)
Q Consensus 52 ~~Pe~V~~iH~~yl~AGA~iI~Tn-T-y~as~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~ 129 (346)
.+.+.++.. +++|||.|-.- + |.+.... ..++.++ ++.++++|+++
T Consensus 14 g~l~~l~~a----i~~GADaVY~G~~~~~~R~~a---~nfs~~~----l~e~i~~ah~~--------------------- 61 (347)
T COG0826 14 GNLEDLKAA----IAAGADAVYIGEKEFGLRRRA---LNFSVED----LAEAVELAHSA--------------------- 61 (347)
T ss_pred CCHHHHHHH----HHcCCCEEEeCCccccccccc---ccCCHHH----HHHHHHHHHHc---------------------
Confidence 444554443 67899977643 3 4433222 2355433 66677777644
Q ss_pred CCCCcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCC
Q 019107 130 SSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGIT 209 (346)
Q Consensus 130 ~~~~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~ 209 (346)
+.+++|+...=+... ..+. ..+.++.|.+.|||.+++- ++ +++..+++.+.+
T Consensus 62 -gkk~~V~~N~~~~~~----------------~~~~----~~~~l~~l~e~GvDaviv~---Dp----g~i~l~~e~~p~ 113 (347)
T COG0826 62 -GKKVYVAVNTLLHND----------------ELET----LERYLDRLVELGVDAVIVA---DP----GLIMLARERGPD 113 (347)
T ss_pred -CCeEEEEeccccccc----------------hhhH----HHHHHHHHHHcCCCEEEEc---CH----HHHHHHHHhCCC
Confidence 456888885433321 1122 4456777888999999854 43 566777877668
Q ss_pred CcEEEEEEEcCC-----------C----cccCCCCHHHHHHHhhcCCC----ceEEEECCC
Q 019107 210 IPAWFSFNSKDG-----------I----NVVSGDSILECASIADSCEQ----VVAVGINCT 251 (346)
Q Consensus 210 ~pv~is~~~~~~-----------~----~l~~G~~~~~av~~~~~~~~----~~avGvNC~ 251 (346)
+|+.+|....-. + -|+.=.|+.+..+..++... +.+.|--|.
T Consensus 114 l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEls~~ei~~i~~~~~~veiEvfVhGalci 174 (347)
T COG0826 114 LPIHVSTQANVTNAETAKFWKELGAKRVVLPRELSLEEIKEIKEQTPDVEIEVFVHGALCI 174 (347)
T ss_pred CcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccCCHHHHHHHHHhCCCceEEEEEecchhh
Confidence 999999875321 1 13333466666666554311 566677675
No 121
>PRK15063 isocitrate lyase; Provisional
Probab=83.15 E-value=55 Score=33.08 Aligned_cols=130 Identities=12% Similarity=0.137 Sum_probs=79.7
Q ss_pred HHHHHHhCCCCEEEEccCC---------------CHHH----HHHHHHHHHHhCCCCcEEEEEEEcCCC-----------
Q 019107 173 RVLILANSGADLIAFETIP---------------NKLE----AKAYAELLEEEGITIPAWFSFNSKDGI----------- 222 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~~---------------~~~E----~~a~~~a~~~~~~~~pv~is~~~~~~~----------- 222 (346)
.++.+.++||-.|-||-.- ..+| +++++.+.+..+ .|++|--..+...
T Consensus 166 ~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g--~~~vIiARTDA~aa~li~s~~d~r 243 (428)
T PRK15063 166 LMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMG--VPTLVIARTDAEAADLLTSDVDER 243 (428)
T ss_pred HHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcC--CCeEEEEECCcccccccccccccc
Confidence 4778889999999999762 2233 333444333333 6766655444321
Q ss_pred --------cccCC-----CCHHHHHHHhhcC-CCceEEEECCC--ChhhHHHHHHHHhhhcCCc--EEEeeCCCCccccc
Q 019107 223 --------NVVSG-----DSILECASIADSC-EQVVAVGINCT--SPRFIHGLILSVRKVTSKP--VIIYPNSGETYNAE 284 (346)
Q Consensus 223 --------~l~~G-----~~~~~av~~~~~~-~~~~avGvNC~--~p~~~~~~l~~l~~~~~~p--l~vypN~g~~~~~~ 284 (346)
++..| ..+.++++..... .+++.|=+-.. .++.+..+.+.+.. ..| +++|+.+..
T Consensus 244 D~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~GAD~iw~Et~~~d~ee~~~fa~~v~~--~~P~~~layn~sPs----- 316 (428)
T PRK15063 244 DRPFITGERTAEGFYRVKAGIEQAIARGLAYAPYADLIWCETSTPDLEEARRFAEAIHA--KFPGKLLAYNCSPS----- 316 (428)
T ss_pred ccccccCCCccccccccccCHHHHHHHHHHHhcCCCEEEeCCCCCCHHHHHHHHHhhcc--cCccceeecCCCCC-----
Confidence 12233 4588888876531 36777766653 34666666666542 236 777754432
Q ss_pred cccccccCCCChHHHHHHHHHHHHcCCeEE
Q 019107 285 LKKWVESTGVRDEDFVSYIGKWRDAGASLF 314 (346)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~iv 314 (346)
-.|... ++++++..+.+++.+.|.+++
T Consensus 317 -fnW~~~--~~~~~~~~f~~eL~~~Gy~~~ 343 (428)
T PRK15063 317 -FNWKKN--LDDATIAKFQRELGAMGYKFQ 343 (428)
T ss_pred -cccccc--cCHHHHHHHHHHHHHcCceEE
Confidence 357543 678889999999999997664
No 122
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=83.05 E-value=30 Score=29.90 Aligned_cols=24 Identities=8% Similarity=0.098 Sum_probs=21.4
Q ss_pred ChHHHHHHHHHHHHhhcceeeccc
Q 019107 53 SPHLVRKVHLDYLDAGANIIITAS 76 (346)
Q Consensus 53 ~Pe~V~~iH~~yl~AGA~iI~TnT 76 (346)
+.+.++++.+..+++|++.|.++-
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g 34 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP 34 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH
Confidence 788899999999999999888875
No 123
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=82.91 E-value=19 Score=36.09 Aligned_cols=106 Identities=17% Similarity=0.195 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCEE-EEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCC
Q 019107 164 ETLKEFHRRRVLILANSGADLI-AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQ 242 (346)
Q Consensus 164 ~e~~~~~~~~i~~l~~~gvD~i-~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~ 242 (346)
+++.+-| ++...+.|+|+| +|..+.+...++.+++++++.|...-..+|.+..+--++ +...+.++.+.. .+
T Consensus 97 DDvVe~F---v~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~---e~yv~~akel~~-~g 169 (472)
T COG5016 97 DDVVEKF---VEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTL---EYYVELAKELLE-MG 169 (472)
T ss_pred hHHHHHH---HHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccH---HHHHHHHHHHHH-cC
Confidence 4555544 556778999998 788999999999999999999855555566654432222 223344554444 46
Q ss_pred ceEEEECCC----ChhhHHHHHHHHhhhcCCcEEEeeC
Q 019107 243 VVAVGINCT----SPRFIHGLILSVRKVTSKPVIIYPN 276 (346)
Q Consensus 243 ~~avGvNC~----~p~~~~~~l~~l~~~~~~pl~vypN 276 (346)
++-|-|-=. .|.....+++.+++..+.|+-+.-.
T Consensus 170 ~DSIciKDmaGlltP~~ayelVk~iK~~~~~pv~lHtH 207 (472)
T COG5016 170 VDSICIKDMAGLLTPYEAYELVKAIKKELPVPVELHTH 207 (472)
T ss_pred CCEEEeecccccCChHHHHHHHHHHHHhcCCeeEEecc
Confidence 777766553 4889999999999988888776543
No 124
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=82.76 E-value=5.5 Score=39.01 Aligned_cols=102 Identities=25% Similarity=0.387 Sum_probs=59.0
Q ss_pred CCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCChh-----------------hHHHHHHHHhhhcCCcE
Q 019107 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPR-----------------FIHGLILSVRKVTSKPV 271 (346)
Q Consensus 209 ~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~p~-----------------~~~~~l~~l~~~~~~pl 271 (346)
+-|.+|.|.-+ |-+.+.+|++.+.. ..++|++||..|. .+-++++.++.....|+
T Consensus 73 D~PLIvQf~~n------dp~~ll~Aa~lv~~--y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pV 144 (358)
T KOG2335|consen 73 DRPLIVQFGGN------DPENLLKAARLVQP--YCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPV 144 (358)
T ss_pred CCceEEEEcCC------CHHHHHHHHHHhhh--hcCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCe
Confidence 58999999432 33456778877754 4599999997653 23344455555555665
Q ss_pred EEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeEE---eecC-----CCchHHHHHHHHHHc
Q 019107 272 IIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLF---GGCC-----RTTPNTIKAISRVLS 333 (346)
Q Consensus 272 ~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iv---GGCC-----Gt~P~hI~al~~~~~ 333 (346)
.+.---+ .+.++=.++++...++|++++ |=.| .+.|.++.+|+...+
T Consensus 145 s~KIRI~---------------~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~ 199 (358)
T KOG2335|consen 145 SVKIRIF---------------VDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRE 199 (358)
T ss_pred EEEEEec---------------CcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHH
Confidence 4442221 234555666677777777765 2222 255555555544433
No 125
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=82.59 E-value=22 Score=34.92 Aligned_cols=133 Identities=13% Similarity=0.067 Sum_probs=71.1
Q ss_pred HHHHHHhCCCCEEEEccCCCHHHHHHHHHH-HHHhCCCCcEEEEEEEcCCCcccC--C----CCHHHHHHHhhcCCCceE
Q 019107 173 RVLILANSGADLIAFETIPNKLEAKAYAEL-LEEEGITIPAWFSFNSKDGINVVS--G----DSILECASIADSCEQVVA 245 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a-~~~~~~~~pv~is~~~~~~~~l~~--G----~~~~~av~~~~~~~~~~a 245 (346)
.++.+.++|+|.++.= +.+++. .+....+.|+++-++-...-...+ - .++++|++ .+++|
T Consensus 96 ~i~~a~~~g~dAv~~~--------~G~l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlr-----LGAdA 162 (348)
T PRK09250 96 IVKLAIEAGCNAVAST--------LGVLEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDALR-----LGAVA 162 (348)
T ss_pred HHHHHHhcCCCEEEeC--------HHHHHhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHH-----CCCCE
Confidence 3556677899999843 555554 344434689888886321110001 1 12333332 46788
Q ss_pred EEECCC-ChhhHHHHHHHHhhh------cCCcEE--EeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeEEee
Q 019107 246 VGINCT-SPRFIHGLILSVRKV------TSKPVI--IYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGG 316 (346)
Q Consensus 246 vGvNC~-~p~~~~~~l~~l~~~------~~~pl~--vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivGG 316 (346)
||+.+- +.+.-...|+.+.+. ...|++ +||-.+.+-+.. ++ ..+|+.++..++--.+.||.||==
T Consensus 163 V~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~--d~----~~~~d~Ia~AaRiaaELGADIVKv 236 (348)
T PRK09250 163 VGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDG--DY----HTAADLTGQANHLAATIGADIIKQ 236 (348)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcc--cc----cccHHHHHHHHHHHHHHcCCEEEe
Confidence 888884 333333344333332 367866 588765432210 11 123565666666678999999874
Q ss_pred cCCCchHH
Q 019107 317 CCRTTPNT 324 (346)
Q Consensus 317 CCGt~P~h 324 (346)
=.-++++.
T Consensus 237 ~yp~~~~~ 244 (348)
T PRK09250 237 KLPTNNGG 244 (348)
T ss_pred cCCCChhh
Confidence 33333343
No 126
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=82.55 E-value=44 Score=31.48 Aligned_cols=144 Identities=14% Similarity=0.103 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEE-Ec---cCC----CHHHHHH-HHHH----HHHhC-CCCcEEEEEEEcCCCcccCCCC
Q 019107 164 ETLKEFHRRRVLILANSGADLIA-FE---TIP----NKLEAKA-YAEL----LEEEG-ITIPAWFSFNSKDGINVVSGDS 229 (346)
Q Consensus 164 ~e~~~~~~~~i~~l~~~gvD~i~-~E---T~~----~~~E~~a-~~~a----~~~~~-~~~pv~is~~~~~~~~l~~G~~ 229 (346)
+.+.+...+.++.+.++|+|+|. .| +.. +.++.+. +... ++... .+.|+++.. | |..
T Consensus 140 ~~i~~~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~~lH~-c--------g~~ 210 (306)
T cd00465 140 EYLTEFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPIVHHS-C--------YDA 210 (306)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCceEEEE-C--------CCH
Confidence 44556677888888899999765 44 222 3333222 2222 22211 135665433 3 222
Q ss_pred HHHHHHHhhcCCCceEEEECCCChhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHc
Q 019107 230 ILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDA 309 (346)
Q Consensus 230 ~~~av~~~~~~~~~~avGvNC~~p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (346)
......+.+ .+++++++-.+. ..+..+.+.+. ....+..|-- +. ... -++++..+.+++.++.
T Consensus 211 -~~~~~~l~~-~~~d~~~~d~~~-~d~~~~~~~~~----~~~~i~Ggv~---~~----~~~---~~~e~i~~~v~~~l~~ 273 (306)
T cd00465 211 -ADLLEEMIQ-LGVDVISFDMTV-NEPKEAIEKVG----EKKTLVGGVD---PG----YLP---ATDEECIAKVEELVER 273 (306)
T ss_pred -HHHHHHHHH-hCcceEeccccc-CCHHHHHHHhC----CCEEEECCCC---cc----ccC---CCHHHHHHHHHHHHHH
Confidence 234555544 367777776653 23344444432 2233333321 10 011 2357788888888875
Q ss_pred CC--eEEeecCCCc----h--HHHHHHHHHHc
Q 019107 310 GA--SLFGGCCRTT----P--NTIKAISRVLS 333 (346)
Q Consensus 310 G~--~ivGGCCGt~----P--~hI~al~~~~~ 333 (346)
+. -|++--||.- + +.|+++.++++
T Consensus 274 ~~~~~il~~~cgi~~~~~~~~enl~a~v~a~~ 305 (306)
T cd00465 274 LGPHYIINPDCGLGPDSDYKPEHLRAVVQLVD 305 (306)
T ss_pred hCCCeEEeCCCCCCCCCCCcHHHHHHHHHHhh
Confidence 44 6777777643 4 88999888765
No 127
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=82.55 E-value=32 Score=31.26 Aligned_cols=96 Identities=17% Similarity=0.219 Sum_probs=64.5
Q ss_pred HHHHHhCCCCEEEEcc-CCC--------------HHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhh
Q 019107 174 VLILANSGADLIAFET-IPN--------------KLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET-~~~--------------~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~ 238 (346)
++.+.+.|+|.+-+-. .++ ++++..+++.+++.+ ..+ .|.+.+..+. +-+.+.++++.+.
T Consensus 73 ~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g--~~v--~~~~~~~~~~-~~~~~~~~~~~~~ 147 (237)
T PF00682_consen 73 VEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELG--YEV--AFGCEDASRT-DPEELLELAEALA 147 (237)
T ss_dssp HHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTT--SEE--EEEETTTGGS-SHHHHHHHHHHHH
T ss_pred HHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcC--Cce--EeCccccccc-cHHHHHHHHHHHH
Confidence 3456678999986654 444 667778888888876 444 7777665543 2234455666555
Q ss_pred cCCCceEEEECCC----ChhhHHHHHHHHhhhcC-CcEEEee
Q 019107 239 SCEQVVAVGINCT----SPRFIHGLILSVRKVTS-KPVIIYP 275 (346)
Q Consensus 239 ~~~~~~avGvNC~----~p~~~~~~l~~l~~~~~-~pl~vyp 275 (346)
+ .+++.|.+.=+ .|..+..+++.+++... .|+.+..
T Consensus 148 ~-~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~ 188 (237)
T PF00682_consen 148 E-AGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHA 188 (237)
T ss_dssp H-HT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEE
T ss_pred H-cCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEe
Confidence 4 37888877633 59999999999998866 7787765
No 128
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=82.39 E-value=41 Score=31.09 Aligned_cols=57 Identities=11% Similarity=0.147 Sum_probs=36.4
Q ss_pred CCcEEEEEEEcCCCcccCCCCHHHH---HHHhhcCCCceEEEECCCCh-----------------hhHHHHHHHHhhhcC
Q 019107 209 TIPAWFSFNSKDGINVVSGDSILEC---ASIADSCEQVVAVGINCTSP-----------------RFIHGLILSVRKVTS 268 (346)
Q Consensus 209 ~~pv~is~~~~~~~~l~~G~~~~~a---v~~~~~~~~~~avGvNC~~p-----------------~~~~~~l~~l~~~~~ 268 (346)
..|+++++. +.++++. +..+. .++++|-+||..| +.+..+++.+++ .+
T Consensus 67 ~~~vivnv~---------~~~~ee~~~~a~~v~--~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~-~~ 134 (231)
T TIGR00736 67 RALVSVNVR---------FVDLEEAYDVLLTIA--EHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE-LN 134 (231)
T ss_pred cCCEEEEEe---------cCCHHHHHHHHHHHh--cCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc-CC
Confidence 469999984 4444544 44443 3689999999743 345566666663 37
Q ss_pred CcEEEeeCC
Q 019107 269 KPVIIYPNS 277 (346)
Q Consensus 269 ~pl~vypN~ 277 (346)
.|+.+.--.
T Consensus 135 ~PVsvKiR~ 143 (231)
T TIGR00736 135 KPIFVKIRG 143 (231)
T ss_pred CcEEEEeCC
Confidence 888876444
No 129
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=81.98 E-value=14 Score=33.51 Aligned_cols=89 Identities=22% Similarity=0.234 Sum_probs=55.2
Q ss_pred HHHHHHHHhCCCCEEEEccC----CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEE
Q 019107 171 RRRVLILANSGADLIAFETI----PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAV 246 (346)
Q Consensus 171 ~~~i~~l~~~gvD~i~~ET~----~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~av 246 (346)
.++++.+.++|+|++++-.- |+-.+...+++.+++.+ ++|+++.+ .+..++....+ .+++.+
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v-----------~t~~ea~~a~~--~G~d~i 147 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADI-----------STLEEALNAAK--LGFDII 147 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEEC-----------CCHHHHHHHHH--cCCCEE
Confidence 35788889999998887421 22236666777777766 67877643 24556655443 478888
Q ss_pred EEC-CC-------ChhhHHHHHHHHhhhcCCcEEE
Q 019107 247 GIN-CT-------SPRFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 247 GvN-C~-------~p~~~~~~l~~l~~~~~~pl~v 273 (346)
++| .. ........++.+++..+.|+++
T Consensus 148 ~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia 182 (219)
T cd04729 148 GTTLSGYTEETAKTEDPDFELLKELRKALGIPVIA 182 (219)
T ss_pred EccCccccccccCCCCCCHHHHHHHHHhcCCCEEE
Confidence 775 21 0112236677777666778654
No 130
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=81.97 E-value=55 Score=34.55 Aligned_cols=98 Identities=16% Similarity=0.159 Sum_probs=63.5
Q ss_pred HHHHHhCCCCEEE-EccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCC-
Q 019107 174 VLILANSGADLIA-FETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT- 251 (346)
Q Consensus 174 i~~l~~~gvD~i~-~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~- 251 (346)
++...++|+|.|- +-.+++...++..++++++.| +-+.++++...... -+-+-+.+.++.+.+ .+++.|.+-=+
T Consensus 97 v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G--~~v~~~i~~t~~p~-~~~~~~~~~~~~~~~-~Gad~I~i~Dt~ 172 (582)
T TIGR01108 97 VKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHG--AHAQGTISYTTSPV-HTLETYLDLAEELLE-MGVDSICIKDMA 172 (582)
T ss_pred HHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcC--CEEEEEEEeccCCC-CCHHHHHHHHHHHHH-cCCCEEEECCCC
Confidence 4456678999874 446778888999999999987 55554443322211 111223344544444 46776655433
Q ss_pred ---ChhhHHHHHHHHhhhcCCcEEEee
Q 019107 252 ---SPRFIHGLILSVRKVTSKPVIIYP 275 (346)
Q Consensus 252 ---~p~~~~~~l~~l~~~~~~pl~vyp 275 (346)
.|..+..+++.+++..+.|+.+.-
T Consensus 173 G~~~P~~v~~lv~~lk~~~~~pi~~H~ 199 (582)
T TIGR01108 173 GILTPKAAYELVSALKKRFGLPVHLHS 199 (582)
T ss_pred CCcCHHHHHHHHHHHHHhCCCceEEEe
Confidence 499999999999887778877654
No 131
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=81.75 E-value=56 Score=33.28 Aligned_cols=51 Identities=16% Similarity=0.271 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhCCCCEEEEccC---CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCC
Q 019107 168 EFHRRRVLILANSGADLIAFETI---PNKLEAKAYAELLEEEGITIPAWFSFNSKDG 221 (346)
Q Consensus 168 ~~~~~~i~~l~~~gvD~i~~ET~---~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~ 221 (346)
++|.+.++.+.+.|+|.|.+-.+ -++.++..++.++++.- ++| +.|.++++
T Consensus 154 ~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~-~~p--i~~H~Hnt 207 (448)
T PRK12331 154 DYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAV-TVP--LEVHTHAT 207 (448)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhc-CCe--EEEEecCC
Confidence 45667788888899999987633 26778888999988742 355 56666554
No 132
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=81.68 E-value=71 Score=33.70 Aligned_cols=64 Identities=16% Similarity=0.121 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhCCCCEEEEccC---CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhh
Q 019107 168 EFHRRRVLILANSGADLIAFETI---PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (346)
Q Consensus 168 ~~~~~~i~~l~~~gvD~i~~ET~---~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~ 238 (346)
++|.+.++.+.+.|+|.|.+-.+ -.+.++..++.++++.- ++| +.|.++++. |..++.++..++
T Consensus 149 ~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~-~~p--i~~H~Hnt~----Gla~An~laAve 215 (582)
T TIGR01108 149 ETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRF-GLP--VHLHSHATT----GMAEMALLKAIE 215 (582)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhC-CCc--eEEEecCCC----CcHHHHHHHHHH
Confidence 46667788888899999977633 36778888999888742 355 566666553 444444444443
No 133
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=81.44 E-value=39 Score=30.16 Aligned_cols=49 Identities=18% Similarity=0.212 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCCCEEEE-----ccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEc
Q 019107 170 HRRRVLILANSGADLIAF-----ETIPNKLEAKAYAELLEEEGITIPAWFSFNSK 219 (346)
Q Consensus 170 ~~~~i~~l~~~gvD~i~~-----ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~ 219 (346)
+.+.++.+.++|+|+|=+ ...|+.......++.+++.. +.|+-+-+.+.
T Consensus 18 ~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~-~~~~~v~l~v~ 71 (220)
T PRK05581 18 LGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVT-KLPLDVHLMVE 71 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcC-CCcEEEEeeeC
Confidence 455788899999999988 54554221222334444422 24544444444
No 134
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=81.03 E-value=15 Score=35.07 Aligned_cols=67 Identities=21% Similarity=0.282 Sum_probs=46.7
Q ss_pred HHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECC
Q 019107 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC 250 (346)
|+....++|+|+|++.+| ++++++.+++.+++.+.+..+.+-.+ .|-++..+.+.+. .+++.|.+-.
T Consensus 194 ea~~a~~agaDiI~LDn~-~~e~l~~~v~~l~~~~~~~~~~leaS--------GGI~~~ni~~yA~--tGvD~Is~ga 260 (278)
T PRK08385 194 DALKAAKAGADIIMLDNM-TPEEIREVIEALKREGLRERVKIEVS--------GGITPENIEEYAK--LDVDVISLGA 260 (278)
T ss_pred HHHHHHHcCcCEEEECCC-CHHHHHHHHHHHHhcCcCCCEEEEEE--------CCCCHHHHHHHHH--cCCCEEEeCh
Confidence 444566799999999998 78999999998877542122333331 4667777776654 5788888765
No 135
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=80.85 E-value=60 Score=33.59 Aligned_cols=98 Identities=10% Similarity=0.113 Sum_probs=66.4
Q ss_pred HHHHHhCCCCEE-EEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCC-
Q 019107 174 VLILANSGADLI-AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT- 251 (346)
Q Consensus 174 i~~l~~~gvD~i-~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~- 251 (346)
++...++|+|+| +|-.++++.-++.+++++++.+...-..|+++....- +-+-+.+.++.+.+ .+++.|.+-=+
T Consensus 103 v~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~---t~e~~~~~a~~l~~-~Gad~I~IkDta 178 (499)
T PRK12330 103 VEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIH---TVEGFVEQAKRLLD-MGADSICIKDMA 178 (499)
T ss_pred HHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCC---CHHHHHHHHHHHHH-cCCCEEEeCCCc
Confidence 555677899998 5678889999999999999987322234455442211 22233445555544 47777766543
Q ss_pred ---ChhhHHHHHHHHhhhc--CCcEEEee
Q 019107 252 ---SPRFIHGLILSVRKVT--SKPVIIYP 275 (346)
Q Consensus 252 ---~p~~~~~~l~~l~~~~--~~pl~vyp 275 (346)
.|..+..+++.+++.. +.|+.+.-
T Consensus 179 Gll~P~~~~~LV~~Lk~~~~~~ipI~~H~ 207 (499)
T PRK12330 179 ALLKPQPAYDIVKGIKEACGEDTRINLHC 207 (499)
T ss_pred cCCCHHHHHHHHHHHHHhCCCCCeEEEEe
Confidence 4999999999999876 68887765
No 136
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=80.84 E-value=20 Score=32.49 Aligned_cols=96 Identities=17% Similarity=0.066 Sum_probs=51.7
Q ss_pred HHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCC------cccCCCCHHHHHHHhhcCCCceEEE
Q 019107 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGI------NVVSGDSILECASIADSCEQVVAVG 247 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~------~l~~G~~~~~av~~~~~~~~~~avG 247 (346)
++.+.+.|+|.+++-|.. +.....+.+++++.+ ..+++++.++... .-.+..++.+.++.+.. .++..+.
T Consensus 89 ~~~~~~~Ga~~vilg~~~-l~~~~~l~ei~~~~~--~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~-~g~~~ii 164 (233)
T PRK00748 89 VEALLDAGVSRVIIGTAA-VKNPELVKEACKKFP--GKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFED-AGVKAII 164 (233)
T ss_pred HHHHHHcCCCEEEECchH-HhCHHHHHHHHHHhC--CCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHh-cCCCEEE
Confidence 334555799999876532 222233445555554 3477787765311 11123456677777755 3566555
Q ss_pred ECCCChh-----hHHHHHHHHhhhcCCcEEE
Q 019107 248 INCTSPR-----FIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 248 vNC~~p~-----~~~~~l~~l~~~~~~pl~v 273 (346)
+.....+ .=..+++++.+..+.|+++
T Consensus 165 ~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia 195 (233)
T PRK00748 165 YTDISRDGTLSGPNVEATRELAAAVPIPVIA 195 (233)
T ss_pred EeeecCcCCcCCCCHHHHHHHHHhCCCCEEE
Confidence 5532211 1146667777666778654
No 137
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=80.34 E-value=58 Score=34.42 Aligned_cols=95 Identities=15% Similarity=0.153 Sum_probs=62.6
Q ss_pred HHHHHhCCCCEE-EEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHH---HHHHHhhcCCCceEEEEC
Q 019107 174 VLILANSGADLI-AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSIL---ECASIADSCEQVVAVGIN 249 (346)
Q Consensus 174 i~~l~~~gvD~i-~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~---~av~~~~~~~~~~avGvN 249 (346)
++...++|+|.| +|-.++++..++..++++++.| +-+-.+++...... .++. +.++.+.+ .+++.|.+-
T Consensus 102 v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G--~~v~~~i~~t~~p~----~t~~~~~~~a~~l~~-~Gad~I~i~ 174 (592)
T PRK09282 102 VEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAG--AHVQGTISYTTSPV----HTIEKYVELAKELEE-MGCDSICIK 174 (592)
T ss_pred HHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcC--CEEEEEEEeccCCC----CCHHHHHHHHHHHHH-cCCCEEEEC
Confidence 444667899988 4567788888999999999877 44443443222111 2344 34444433 467766654
Q ss_pred CC----ChhhHHHHHHHHhhhcCCcEEEee
Q 019107 250 CT----SPRFIHGLILSVRKVTSKPVIIYP 275 (346)
Q Consensus 250 C~----~p~~~~~~l~~l~~~~~~pl~vyp 275 (346)
=+ .|..+..+++.+++..+.|+.+..
T Consensus 175 Dt~G~~~P~~~~~lv~~lk~~~~~pi~~H~ 204 (592)
T PRK09282 175 DMAGLLTPYAAYELVKALKEEVDLPVQLHS 204 (592)
T ss_pred CcCCCcCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 33 499999999999887778887765
No 138
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=79.97 E-value=28 Score=36.30 Aligned_cols=105 Identities=18% Similarity=0.130 Sum_probs=71.0
Q ss_pred HHHHHHHhCCCCEEEEccC--CCHHH---------HHHHHHHHHHhCCCCcEEEEEEEcCCC------------------
Q 019107 172 RRVLILANSGADLIAFETI--PNKLE---------AKAYAELLEEEGITIPAWFSFNSKDGI------------------ 222 (346)
Q Consensus 172 ~~i~~l~~~gvD~i~~ET~--~~~~E---------~~a~~~a~~~~~~~~pv~is~~~~~~~------------------ 222 (346)
++++.+.++|+|-+.+-|. .+++| -..+-++++++| +..+++|+..+...
T Consensus 338 e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg-~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~ 416 (538)
T PLN02617 338 EVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYG-NQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPG 416 (538)
T ss_pred HHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcC-CceEEEEEecCcCcccCccccccccccccccC
Confidence 5577888899999999883 22222 245566777777 56788898865321
Q ss_pred ----------------cccCCCCHHHHHHHhhcCCCceEEEECCCChh-----hHHHHHHHHhhhcCCcEEEeeCCC
Q 019107 223 ----------------NVVSGDSILECASIADSCEQVVAVGINCTSPR-----FIHGLILSVRKVTSKPVIIYPNSG 278 (346)
Q Consensus 223 ----------------~l~~G~~~~~av~~~~~~~~~~avGvNC~~p~-----~~~~~l~~l~~~~~~pl~vypN~g 278 (346)
+-..+.++.+.++.+.. .++.-|.+|+..-+ .=..+++.+.+..+.|+++.--+|
T Consensus 417 ~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~-~Gageil~t~id~DGt~~G~d~~l~~~v~~~~~ipviasGG~g 492 (538)
T PLN02617 417 PNGEEYAWYQCTVKGGREGRPIGAYELAKAVEE-LGAGEILLNCIDCDGQGKGFDIELVKLVSDAVTIPVIASSGAG 492 (538)
T ss_pred cCcccceEEEEEEecCcccCCCCHHHHHHHHHh-cCCCEEEEeeccccccccCcCHHHHHHHHhhCCCCEEEECCCC
Confidence 11135567777887766 57888999997432 225677777777899998864443
No 139
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=79.92 E-value=17 Score=36.24 Aligned_cols=175 Identities=16% Similarity=0.163 Sum_probs=85.8
Q ss_pred CChHHHHHHHHHHHHhhcceeeccccccCHHhHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 019107 52 SSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISS 131 (346)
Q Consensus 52 ~~Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~ 131 (346)
++.+.+++.-+++ ..+.+.|.||+|+-....+...--+ + +++=+.+++..+++++...+ -+
T Consensus 69 ~d~~~~~~~l~~~-GL~v~~i~p~~f~~~~~~~GSLt~p-D--~~vR~~AIe~~k~~idiA~e---------------LG 129 (378)
T TIGR02635 69 EDYEELARYAEEL-GLKIGAINPNLFQDDDYKFGSLTHP-D--KRIRRKAIDHLLECVDIAKK---------------TG 129 (378)
T ss_pred cCHHHHHHHHHHc-CCceeeeeCCccCCcccCCCCCCCC-C--HHHHHHHHHHHHHHHHHHHH---------------hC
Confidence 5666665552222 2345667888885332222111111 1 24455666666666543211 12
Q ss_pred CCcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh---CCCCEEEEcc-----------CCCHHHHH
Q 019107 132 RPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILAN---SGADLIAFET-----------IPNKLEAK 197 (346)
Q Consensus 132 ~~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~---~gvD~i~~ET-----------~~~~~E~~ 197 (346)
.+ .| .. ++.||..|.+. .+.++..+.+.+-++.+.+ .++++++ |. +++..+..
T Consensus 130 a~-~I-~i------W~~DG~~~~g~----~~~~~a~~rl~esL~eI~~~~~~~v~~~i-E~Kp~Ep~~y~t~~~~~~~~l 196 (378)
T TIGR02635 130 SK-DI-SL------WLADGTNYPGQ----DDFRSRKDRLEESLAEVYEHLGADMRLLI-EYKFFEPAFYHTDIPDWGTAY 196 (378)
T ss_pred CC-eE-EE------ecCCcCcCCcc----cCHHHHHHHHHHHHHHHHHhCcCCCEEEE-ecCCCCCceeeecCCcHHHHH
Confidence 22 22 21 23456666552 2445554555555544443 3666654 43 44444444
Q ss_pred HHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCC------------ChhhHHHHHHHHhh
Q 019107 198 AYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT------------SPRFIHGLILSVRK 265 (346)
Q Consensus 198 a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~------------~p~~~~~~l~~l~~ 265 (346)
+ ++++.+ -|+.+.+ |-++...|+++.+++..+.......++=+|=. .|..+..+++.+.+
T Consensus 197 ~---l~~~lg--~~~~v~l---D~GH~~~~Enia~~~a~l~~~~kL~hiH~nd~~~~Ddd~~vG~~d~~e~~~il~el~~ 268 (378)
T TIGR02635 197 A---LSEKLG--ERALVLV---DTGHHAQGTNIEFIVATLLDEKKLGGFHFNSRKYADDDLTVGAINPYELFLIFKEIVR 268 (378)
T ss_pred H---HHHhhC--CCceEEe---ecCccCCCCCHHHHHHHHhhCCceeEEEecCCCcccCCCceecCCHHHHHHHHHHHHh
Confidence 3 344544 4554444 44555679999997776643223344445431 24456666666664
Q ss_pred h
Q 019107 266 V 266 (346)
Q Consensus 266 ~ 266 (346)
.
T Consensus 269 ~ 269 (378)
T TIGR02635 269 A 269 (378)
T ss_pred c
Confidence 4
No 140
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=79.86 E-value=62 Score=31.50 Aligned_cols=98 Identities=14% Similarity=0.136 Sum_probs=59.3
Q ss_pred HHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEEC
Q 019107 170 HRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGIN 249 (346)
Q Consensus 170 ~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvN 249 (346)
-++.++++.+.|.=.++.+ + ++++....++-.+.. .+++.++.-.. -++++.+...+++...+++|.+-
T Consensus 47 n~~LA~~a~~~G~~~i~hK-~-~~E~~~sfvrk~k~~--~L~v~~SvG~t-------~e~~~r~~~lv~a~~~~d~i~~D 115 (321)
T TIGR01306 47 DEKLAEQLAENGYFYIMHR-F-DEESRIPFIKDMQER--GLFASISVGVK-------ACEYEFVTQLAEEALTPEYITID 115 (321)
T ss_pred hHHHHHHHHHcCCEEEEec-C-CHHHHHHHHHhcccc--ccEEEEEcCCC-------HHHHHHHHHHHhcCCCCCEEEEe
Confidence 3455666777788778888 4 677655543333222 24555444221 11223344444433236888888
Q ss_pred CC--ChhhHHHHHHHHhhhcCCcEEEeeCCC
Q 019107 250 CT--SPRFIHGLILSVRKVTSKPVIIYPNSG 278 (346)
Q Consensus 250 C~--~p~~~~~~l~~l~~~~~~pl~vypN~g 278 (346)
.+ +-..+...++.+++..+.|.++-.|-+
T Consensus 116 ~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~ 146 (321)
T TIGR01306 116 IAHGHSNSVINMIKHIKTHLPDSFVIAGNVG 146 (321)
T ss_pred CccCchHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 86 457888889999988777877777764
No 141
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=79.79 E-value=57 Score=31.00 Aligned_cols=70 Identities=10% Similarity=0.093 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHhCCCC-EE-EEccCCC---------HHHHHHHHHHHHHhCCCCc-EEEEEEEcCCCcccCCCCHHH
Q 019107 165 TLKEFHRRRVLILANSGAD-LI-AFETIPN---------KLEAKAYAELLEEEGITIP-AWFSFNSKDGINVVSGDSILE 232 (346)
Q Consensus 165 e~~~~~~~~i~~l~~~gvD-~i-~~ET~~~---------~~E~~a~~~a~~~~~~~~p-v~is~~~~~~~~l~~G~~~~~ 232 (346)
...++-.+.++...+.|+| .| +..|+.. +.++..+++.+++.- +.| +-+++.+.++. |..++.
T Consensus 146 ~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~-~~p~~~l~~H~Hn~~----Gla~AN 220 (279)
T cd07947 146 FVLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDC-GVPSENLEWHGHNDF----YKAVAN 220 (279)
T ss_pred chHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhc-CCCCceEEEEecCCC----ChHHHH
Confidence 3445555666666779999 45 6677762 367888888887642 244 55788887765 666677
Q ss_pred HHHHhhc
Q 019107 233 CASIADS 239 (346)
Q Consensus 233 av~~~~~ 239 (346)
++..+..
T Consensus 221 ~laA~~a 227 (279)
T cd07947 221 AVAAWLY 227 (279)
T ss_pred HHHHHHh
Confidence 7766653
No 142
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=79.69 E-value=61 Score=31.34 Aligned_cols=81 Identities=21% Similarity=0.154 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEcc-CC---------CHHHHHHHHHHHHHhC----CCCcEEEEEEEcCCCcccCCCC
Q 019107 164 ETLKEFHRRRVLILANSGADLIAFET-IP---------NKLEAKAYAELLEEEG----ITIPAWFSFNSKDGINVVSGDS 229 (346)
Q Consensus 164 ~e~~~~~~~~i~~l~~~gvD~i~~ET-~~---------~~~E~~a~~~a~~~~~----~~~pv~is~~~~~~~~l~~G~~ 229 (346)
++..+.|.+.++.+.+ .+|+|-+.. -| +.+.+..+++++++.- ..+|+++-++... +-+.
T Consensus 144 ~~~~~d~~~~~~~~~~-~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~-----~~~~ 217 (327)
T cd04738 144 EDAVEDYVIGVRKLGP-YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDL-----SDEE 217 (327)
T ss_pred cccHHHHHHHHHHHHh-hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCC-----CHHH
Confidence 3444456666666653 589887653 22 2356667777777642 1389999886421 1124
Q ss_pred HHHHHHHhhcCCCceEEE-ECCC
Q 019107 230 ILECASIADSCEQVVAVG-INCT 251 (346)
Q Consensus 230 ~~~av~~~~~~~~~~avG-vNC~ 251 (346)
+.+.++.+.+ .++++|- .|.+
T Consensus 218 ~~~ia~~l~~-aGad~I~~~n~~ 239 (327)
T cd04738 218 LEDIADVALE-HGVDGIIATNTT 239 (327)
T ss_pred HHHHHHHHHH-cCCcEEEEECCc
Confidence 5566666655 4788766 4544
No 143
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=79.57 E-value=2.7 Score=39.98 Aligned_cols=68 Identities=22% Similarity=0.229 Sum_probs=45.0
Q ss_pred HHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCC
Q 019107 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT 251 (346)
Q Consensus 172 ~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~ 251 (346)
+|+++..++|+|.|+.|-+.+.+|++.++++++ .|+.+.++-.. ++++..+ ..+.. .|+.-|-.-.+
T Consensus 170 ~Ra~AY~eAGAD~if~~al~~~e~i~~f~~av~-----~pl~~N~t~~g------~tp~~~~-~~L~~-~Gv~~V~~~~~ 236 (289)
T COG2513 170 ERAQAYVEAGADAIFPEALTDLEEIRAFAEAVP-----VPLPANITEFG------KTPLLTV-AELAE-LGVKRVSYGLT 236 (289)
T ss_pred HHHHHHHHcCCcEEccccCCCHHHHHHHHHhcC-----CCeeeEeeccC------CCCCcCH-HHHHh-cCceEEEECcH
Confidence 478889999999999999999999998888765 55655554321 1122222 33433 46666655555
Q ss_pred C
Q 019107 252 S 252 (346)
Q Consensus 252 ~ 252 (346)
.
T Consensus 237 ~ 237 (289)
T COG2513 237 A 237 (289)
T ss_pred H
Confidence 3
No 144
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=79.54 E-value=11 Score=40.34 Aligned_cols=50 Identities=28% Similarity=0.414 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHH---HhCCCCcEEEEEEEcC
Q 019107 170 HRRRVLILANSGADLIAFETIPNKLEAKAYAELLE---EEGITIPAWFSFNSKD 220 (346)
Q Consensus 170 ~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~---~~~~~~pv~is~~~~~ 220 (346)
--+|+..|.++|+|++-+ |+|+.+|++++-..-+ +.+.+.|.+.-+.|+.
T Consensus 112 tv~Qi~~l~~aGceiVRv-tv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~ 164 (733)
T PLN02925 112 TVDQVMRIADKGADIVRI-TVQGKKEADACFEIKNTLVQKGYNIPLVADIHFAP 164 (733)
T ss_pred HHHHHHHHHHcCCCEEEE-cCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCH
Confidence 345899999999999874 7899999987765433 3466799998887763
No 145
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=79.49 E-value=29 Score=34.30 Aligned_cols=101 Identities=26% Similarity=0.176 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEE-EEccCCCH------HHHHHHHHHH----HHhCCCCcEEEEEEEcCCCcccCCCC
Q 019107 161 VSLETLKEFHRRRVLILANSGADLI-AFETIPNK------LEAKAYAELL----EEEGITIPAWFSFNSKDGINVVSGDS 229 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~~gvD~i-~~ET~~~~------~E~~a~~~a~----~~~~~~~pv~is~~~~~~~~l~~G~~ 229 (346)
++.+++.+ ++..+..+|||+| ..|+..+. +..+.+.+++ +++|..++++..++ +.
T Consensus 143 ld~~~la~----~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit---------~~- 208 (367)
T cd08205 143 LSPEELAE----LAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNIT---------GD- 208 (367)
T ss_pred CCHHHHHH----HHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcC---------CC-
Confidence 56666555 5666777999998 44554432 2333333443 23453344444442 22
Q ss_pred HHHHHHHhh--cCCCceEEEECCCChhhHHHHHHHHhhhcCCcEEEeeCC
Q 019107 230 ILECASIAD--SCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNS 277 (346)
Q Consensus 230 ~~~av~~~~--~~~~~~avGvNC~~p~~~~~~l~~l~~~~~~pl~vypN~ 277 (346)
..++++..+ ...+++++.+|-... -...++.+.+..+.|+..+|+.
T Consensus 209 ~~e~i~~a~~a~~~Gad~vmv~~~~~--g~~~~~~l~~~~~lpi~~H~a~ 256 (367)
T cd08205 209 PDELRRRADRAVEAGANALLINPNLV--GLDALRALAEDPDLPIMAHPAF 256 (367)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecccc--cccHHHHHHhcCCCeEEEccCc
Confidence 255555432 125778888877421 1122333344446778777765
No 146
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=79.46 E-value=28 Score=31.61 Aligned_cols=98 Identities=13% Similarity=0.016 Sum_probs=55.6
Q ss_pred HHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCC
Q 019107 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT 251 (346)
Q Consensus 172 ~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~ 251 (346)
+.++...+.++|++=+|--. .....++..+++. +.++++|+.-. ..+++-..+.+.+..+.. .+++.+=+-+.
T Consensus 80 ~ll~~~~~~~~d~vDiEl~~--~~~~~~~~~~~~~--~~kiI~S~H~f--~~tp~~~~l~~~~~~~~~-~gadivKla~~ 152 (225)
T cd00502 80 ELLEEALKLGPDYVDIELDS--ALLEELINSRKKG--NTKIIGSYHDF--SGTPSDEELVSRLEKMAA-LGADIVKIAVM 152 (225)
T ss_pred HHHHHHHHHCCCEEEEEecc--hHHHHHHHHHHhC--CCEEEEEeccC--CCCcCHHHHHHHHHHHHH-hCCCEEEEEec
Confidence 34455566779999999543 3334444444443 48999999632 222222334445555544 35566555554
Q ss_pred --ChhhHHHHHHHHhhhc---CCcEEEeeC
Q 019107 252 --SPRFIHGLILSVRKVT---SKPVIIYPN 276 (346)
Q Consensus 252 --~p~~~~~~l~~l~~~~---~~pl~vypN 276 (346)
+++....+++...+.. +.|++++.-
T Consensus 153 ~~~~~D~~~ll~~~~~~~~~~~~p~i~~~M 182 (225)
T cd00502 153 ANSIEDNLRLLKFTRQVKNLYDIPLIAINM 182 (225)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 4666666666544432 468888763
No 147
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=79.41 E-value=63 Score=31.31 Aligned_cols=71 Identities=13% Similarity=0.110 Sum_probs=40.9
Q ss_pred HHHHHHHHhCCCCEEEEccC-----C-----CH-HHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhc
Q 019107 171 RRRVLILANSGADLIAFETI-----P-----NK-LEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS 239 (346)
Q Consensus 171 ~~~i~~l~~~gvD~i~~ET~-----~-----~~-~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~ 239 (346)
.+.++.+.++|+|.|-+-.. + +. .....+++.+++.- ++||++-++.. -+++.+.++.+..
T Consensus 117 ~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~-~iPV~vKl~p~-------~~~~~~~a~~l~~ 188 (334)
T PRK07565 117 VDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV-SIPVAVKLSPY-------FSNLANMAKRLDA 188 (334)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc-CCcEEEEeCCC-------chhHHHHHHHHHH
Confidence 34555666788999876321 1 11 12445566666643 69999988531 1245677776655
Q ss_pred CCCceEEE-ECC
Q 019107 240 CEQVVAVG-INC 250 (346)
Q Consensus 240 ~~~~~avG-vNC 250 (346)
.++++|- +|.
T Consensus 189 -~G~dgI~~~n~ 199 (334)
T PRK07565 189 -AGADGLVLFNR 199 (334)
T ss_pred -cCCCeEEEECC
Confidence 4667643 354
No 148
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=79.30 E-value=52 Score=31.06 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=25.9
Q ss_pred cCCChHHHHHHHHHHHHhhcceeeccccc
Q 019107 50 LVSSPHLVRKVHLDYLDAGANIIITASYQ 78 (346)
Q Consensus 50 ll~~Pe~V~~iH~~yl~AGA~iI~TnTy~ 78 (346)
.+++++.+.++=+.--++|++++....|-
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~k 64 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFK 64 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeec
Confidence 36899999999999999999999999994
No 149
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=79.26 E-value=40 Score=31.31 Aligned_cols=115 Identities=18% Similarity=0.140 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHHhhcceeeccccccCHHhHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCC
Q 019107 54 PHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRP 133 (346)
Q Consensus 54 Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (346)
|.-|.+.-+.|.+||+--|.---.+++. -...-++.+ + ...=++.|++++. +..
T Consensus 84 ~~~v~~tv~~~~~aG~agi~IEDq~~~~--~~~~l~~~e---e-~~~kI~Aa~~a~~--------------------~~~ 137 (238)
T PF13714_consen 84 PENVARTVRELERAGAAGINIEDQRCGH--GGKQLVSPE---E-MVAKIRAAVDARR--------------------DPD 137 (238)
T ss_dssp HHHHHHHHHHHHHCT-SEEEEESBSTTT--STT-B--HH---H-HHHHHHHHHHHHS--------------------STT
T ss_pred hHHHHHHHHHHHHcCCcEEEeeccccCC--CCCceeCHH---H-HHHHHHHHHHhcc--------------------CCe
Confidence 8899999999999999865543334331 001112322 1 1222455555542 112
Q ss_pred cEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEE
Q 019107 134 VLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAW 213 (346)
Q Consensus 134 ~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~ 213 (346)
.+|-.-.--+. ...+-.+.--+|.++..++|+|.++++.+.+.+|++.+++.+ + .|+.
T Consensus 138 ~~I~ARTDa~~-----------------~~~~~~deaI~R~~aY~eAGAD~ifi~~~~~~~~i~~~~~~~---~--~Pl~ 195 (238)
T PF13714_consen 138 FVIIARTDAFL-----------------RAEEGLDEAIERAKAYAEAGADMIFIPGLQSEEEIERIVKAV---D--GPLN 195 (238)
T ss_dssp SEEEEEECHHC-----------------HHHHHHHHHHHHHHHHHHTT-SEEEETTSSSHHHHHHHHHHH---S--SEEE
T ss_pred EEEEEeccccc-----------------cCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhc---C--CCEE
Confidence 45544221110 012333334458899999999999999999999977776655 2 7865
Q ss_pred EEE
Q 019107 214 FSF 216 (346)
Q Consensus 214 is~ 216 (346)
+..
T Consensus 196 v~~ 198 (238)
T PF13714_consen 196 VNP 198 (238)
T ss_dssp EET
T ss_pred EEc
Confidence 544
No 150
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=79.20 E-value=57 Score=30.65 Aligned_cols=156 Identities=18% Similarity=0.218 Sum_probs=83.3
Q ss_pred HHHHHHHhCCCCEEEEccCC-----------------------CHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCC
Q 019107 172 RRVLILANSGADLIAFETIP-----------------------NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGD 228 (346)
Q Consensus 172 ~~i~~l~~~gvD~i~~ET~~-----------------------~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~ 228 (346)
+.+..+.+.|||+|=+- || ++++....++.+++...+.|++ -++.-+.- . ..
T Consensus 30 ~~~~~l~~~Gad~iElG-iPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~v-lm~Y~N~i-~--~~ 104 (258)
T PRK13111 30 EIIKALVEAGADIIELG-IPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIV-LMTYYNPI-F--QY 104 (258)
T ss_pred HHHHHHHHCCCCEEEEC-CCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE-EEecccHH-h--hc
Confidence 35777888999999443 34 3334444455555333468876 44332211 1 22
Q ss_pred CHHHHHHHhhcCCCceEEEECCCChhhHHHHHHHHhhhcCCcE-EEeeCCCCc----ccccccccc--------cc-CCC
Q 019107 229 SILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKPV-IIYPNSGET----YNAELKKWV--------ES-TGV 294 (346)
Q Consensus 229 ~~~~av~~~~~~~~~~avGvNC~~p~~~~~~l~~l~~~~~~pl-~vypN~g~~----~~~~~~~~~--------~~-~~~ 294 (346)
.++..++.+.. .+++++-++=-.++....+++.++++.=.++ ++-||.... .......|+ ++ ...
T Consensus 105 G~e~f~~~~~~-aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~ 183 (258)
T PRK13111 105 GVERFAADAAE-AGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGVTGARSA 183 (258)
T ss_pred CHHHHHHHHHH-cCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCcccC
Confidence 34667777765 4889998876677777788877776532333 366776210 000011111 00 001
Q ss_pred ChHHHHHHHHHHHHc-CCe-EEeecCCCchHHHHHHHHHHcC
Q 019107 295 RDEDFVSYIGKWRDA-GAS-LFGGCCRTTPNTIKAISRVLSN 334 (346)
Q Consensus 295 ~~~~~~~~~~~~~~~-G~~-ivGGCCGt~P~hI~al~~~~~~ 334 (346)
.+....+++++.++. +.. ++|+ +=.+|+|++++.+..+.
T Consensus 184 ~~~~~~~~i~~vk~~~~~pv~vGf-GI~~~e~v~~~~~~ADG 224 (258)
T PRK13111 184 DAADLAELVARLKAHTDLPVAVGF-GISTPEQAAAIAAVADG 224 (258)
T ss_pred CCccHHHHHHHHHhcCCCcEEEEc-ccCCHHHHHHHHHhCCE
Confidence 123344444444432 344 4554 33599999998876443
No 151
>PRK12999 pyruvate carboxylase; Reviewed
Probab=78.79 E-value=79 Score=36.19 Aligned_cols=99 Identities=14% Similarity=0.130 Sum_probs=67.9
Q ss_pred HHHHHhCCCCEE-EEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCc--ccCCCCHH---HHHHHhhcCCCceEEE
Q 019107 174 VLILANSGADLI-AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGIN--VVSGDSIL---ECASIADSCEQVVAVG 247 (346)
Q Consensus 174 i~~l~~~gvD~i-~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~--l~~G~~~~---~av~~~~~~~~~~avG 247 (346)
++...++|+|+| +|-.+.++..++.+++++++.+ +-+.++++...+-. .+.-.++. +.++.+.+ .+++.|.
T Consensus 633 i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g--~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~-~Ga~~i~ 709 (1146)
T PRK12999 633 VREAAAAGIDVFRIFDSLNWVENMRVAIDAVRETG--KIAEAAICYTGDILDPARAKYDLDYYVDLAKELEK-AGAHILA 709 (1146)
T ss_pred HHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHcC--CeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHH-cCCCEEE
Confidence 556777999998 5678888888999999999976 55556665542110 11113443 44555544 4677776
Q ss_pred ECCC----ChhhHHHHHHHHhhhcCCcEEEee
Q 019107 248 INCT----SPRFIHGLILSVRKVTSKPVIIYP 275 (346)
Q Consensus 248 vNC~----~p~~~~~~l~~l~~~~~~pl~vyp 275 (346)
+-=+ .|..+..+++.+++..+.|+.+.-
T Consensus 710 ikDt~G~l~P~~~~~lv~~lk~~~~ipi~~H~ 741 (1146)
T PRK12999 710 IKDMAGLLKPAAAYELVSALKEEVDLPIHLHT 741 (1146)
T ss_pred ECCccCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 6543 499999999999988888887764
No 152
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=78.78 E-value=38 Score=34.75 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEEccC---CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHh
Q 019107 167 KEFHRRRVLILANSGADLIAFETI---PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIA 237 (346)
Q Consensus 167 ~~~~~~~i~~l~~~gvD~i~~ET~---~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~ 237 (346)
.++|.+.++.+.+.|+|.|.+-.+ -.+.++..++.++++.- ++| |.|.++++. |..++.++..+
T Consensus 152 ~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~-~vp--I~~H~Hnt~----GlA~AN~laAi 218 (467)
T PRK14041 152 LEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKF-GVP--VEVHSHCTT----GLASLAYLAAV 218 (467)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhc-CCc--eEEEecCCC----CcHHHHHHHHH
Confidence 356777888888999999977633 36778888899888742 355 466666543 44444444444
No 153
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=78.63 E-value=44 Score=34.60 Aligned_cols=65 Identities=8% Similarity=0.189 Sum_probs=41.7
Q ss_pred HHHHHHHHhCCCCEEEEccCC-CHHHHHHHHHHHHHhCCCCcEEEE-EEEcCCCcccCCCCHHHHHHHhhcCCCceEEEE
Q 019107 171 RRRVLILANSGADLIAFETIP-NKLEAKAYAELLEEEGITIPAWFS-FNSKDGINVVSGDSILECASIADSCEQVVAVGI 248 (346)
Q Consensus 171 ~~~i~~l~~~gvD~i~~ET~~-~~~E~~a~~~a~~~~~~~~pv~is-~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGv 248 (346)
.++++.|.++|+|+|++-+-. +-......++.+++.-.+.++++. + .+.+++...++ .++++|-+
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v-----------~t~e~a~~a~~--aGaD~i~v 316 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNV-----------VTMYQAQNLIQ--AGVDGLRV 316 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecC-----------CCHHHHHHHHH--cCcCEEEE
Confidence 368999999999999998732 222333556667764325777642 2 24566666664 47788754
No 154
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=78.44 E-value=73 Score=33.68 Aligned_cols=64 Identities=19% Similarity=0.192 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhCCCCEEEEccCC---CHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhh
Q 019107 168 EFHRRRVLILANSGADLIAFETIP---NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (346)
Q Consensus 168 ~~~~~~i~~l~~~gvD~i~~ET~~---~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~ 238 (346)
++|.+.++.+.+.|+|.|.+-.+. .+.++..++.++++.- ++| |.+.++++. |..++.++..++
T Consensus 154 ~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~-~~p--i~~H~Hnt~----Gla~An~laAv~ 220 (592)
T PRK09282 154 EKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEV-DLP--VQLHSHCTS----GLAPMTYLKAVE 220 (592)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhC-CCe--EEEEEcCCC----CcHHHHHHHHHH
Confidence 567778888889999999876433 6778999999988742 355 566666553 445555555554
No 155
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=78.40 E-value=40 Score=30.76 Aligned_cols=94 Identities=18% Similarity=0.125 Sum_probs=58.7
Q ss_pred HhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCC--Chhh
Q 019107 178 ANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT--SPRF 255 (346)
Q Consensus 178 ~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~--~p~~ 255 (346)
...++|++=+|-.........+++.+++. +..+++|+.- -.++++-+.+.+.++.+.. .+++.+=+-+. +++.
T Consensus 89 ~~~~~d~vDiEl~~~~~~~~~l~~~~~~~--~~kvI~S~H~--f~~tp~~~~l~~~~~~~~~-~gaDivKia~~a~~~~D 163 (228)
T TIGR01093 89 DSPGPDFVDIELFLPDDAVKELINIAKKG--GTKIIMSYHD--FQKTPSWEEIVERLEKALS-YGADIVKIAVMANSKED 163 (228)
T ss_pred HhCCCCEEEEEccCCHHHHHHHHHHHHHC--CCEEEEeccC--CCCCCCHHHHHHHHHHHHH-hCCCEEEEEeccCCHHH
Confidence 45779999999665555555566655654 4889999862 2333333445556666654 46777777775 4666
Q ss_pred HHHHHHHHhh---hcCCcEEEeeC
Q 019107 256 IHGLILSVRK---VTSKPVIIYPN 276 (346)
Q Consensus 256 ~~~~l~~l~~---~~~~pl~vypN 276 (346)
...+++...+ ..+.|++++.-
T Consensus 164 ~~~ll~~~~~~~~~~~~p~i~~~M 187 (228)
T TIGR01093 164 VLTLLEITNKVDEHADVPLITMSM 187 (228)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeC
Confidence 6666654433 24579888763
No 156
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=78.39 E-value=34 Score=32.64 Aligned_cols=160 Identities=19% Similarity=0.172 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHH-----------H----HHHHHHHHHHh----CCCCcEEEEEEEcCCC
Q 019107 162 SLETLKEFHRRRVLILANSGADLIAFETIPNKL-----------E----AKAYAELLEEE----GITIPAWFSFNSKDGI 222 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~-----------E----~~a~~~a~~~~----~~~~pv~is~~~~~~~ 222 (346)
.++-+++.|++ ++++|+|+|.--|+..-. + .+.+++.+++. ....+++|.-++-+-+
T Consensus 39 ~p~~v~~iH~~----yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~VaGsiGP~g 114 (305)
T PF02574_consen 39 NPELVRQIHRD----YLEAGADIITTNTYQASRERLKEYGLSDEEAEELNRAAVELAREAADEYGSGRKVLVAGSIGPYG 114 (305)
T ss_dssp -HHHHHHHHHH----HHHHT-SEEEEC-TT-SHHHHGGGT-GGGCHHHHHHHHHHHHHHHHTT---TT-SEEEEEEE--S
T ss_pred CHHHHHHHHHH----HHHCCCCeEEecCCcCchhhhhhcCCcHHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccccc
Confidence 56778888876 445899999877765221 1 12223444442 1123466666654332
Q ss_pred --------cccCCCCHHHHHH-------HhhcCCCceEEEECCC-ChhhHHHHHHHHhhhcCCcEE----EeeCCCCccc
Q 019107 223 --------NVVSGDSILECAS-------IADSCEQVVAVGINCT-SPRFIHGLILSVRKVTSKPVI----IYPNSGETYN 282 (346)
Q Consensus 223 --------~l~~G~~~~~av~-------~~~~~~~~~avGvNC~-~p~~~~~~l~~l~~~~~~pl~----vypN~g~~~~ 282 (346)
.-..+.++.++.. .+.. .++|.+.+.-. +...+..+++.+++..+.|+. +..+ +...+
T Consensus 115 a~l~g~~y~~~~~~~~~~~~~~~~~q~~~l~~-~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~p~~is~~~~~~-~~l~~ 192 (305)
T PF02574_consen 115 AYLSGSEYPGDYGLSFEELRDFHREQAEALAD-AGVDLLLFETMPSLAEAKAALEAIKEVTGLPVWISFSCKDS-GRLRD 192 (305)
T ss_dssp --------CTTCTT-HHHHHHHHHHHHHHHHH-TT-SEEEEEEEC-CSCHHHHHHHHHHHHHCCSSEEE-EEEE-ES-TC
T ss_pred ccchhhhccccccccHHHHHHHHHHHHHHHHh-cCCCEEEEecCcHHHHHHHHHHHHHhhhhhhceeccchhhh-ccccC
Confidence 1123445554433 2223 47999999975 345566677776664455632 2222 22112
Q ss_pred cccccccccCCCChHHHHHHHHHHHHcCCeEEeecCCCchHHHHHHHHHHcC
Q 019107 283 AELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSN 334 (346)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivGGCCGt~P~hI~al~~~~~~ 334 (346)
++. .. ..-....+..... ..++..||=-|...|.+..+|.+....
T Consensus 193 g~~--~~----~~~~~~~~~~~~~-~~~~~~iGvNC~~~~~~~~~l~~~~~~ 237 (305)
T PF02574_consen 193 GTS--LE----DAVQVIDELLRAL-PPGPDAIGVNCTSPPEIMKALLELMSA 237 (305)
T ss_dssp TTB--CT----TSHHHHHHHHHHH-CTT-SEEEEESSS-HHHHHHHHHHHHH
T ss_pred CCC--HH----HHHHHHHHHHHHh-hhhhheEEcCCCCcHHHHhHHHHHHhc
Confidence 110 00 0011222222233 578999999999999999998887654
No 157
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=78.10 E-value=15 Score=38.49 Aligned_cols=50 Identities=12% Similarity=0.169 Sum_probs=39.0
Q ss_pred HHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHH---hCCCCcEEEEEEEcC
Q 019107 170 HRRRVLILANSGADLIAFETIPNKLEAKAYAELLEE---EGITIPAWFSFNSKD 220 (346)
Q Consensus 170 ~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~---~~~~~pv~is~~~~~ 220 (346)
--+|+..|.++|+|++-+ |+|+.+|++++-...++ .|.+.|++.-+.|+.
T Consensus 43 tv~Qi~~l~~aGceiVRv-tv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~ 95 (611)
T PRK02048 43 CVAQAKRIIDAGGEYVRL-TTQGVREAENLMNINIGLRSQGYMVPLVADVHFNP 95 (611)
T ss_pred HHHHHHHHHHcCCCEEEE-cCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCc
Confidence 345899999999999874 78999999887655443 456799998888764
No 158
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=78.03 E-value=61 Score=30.41 Aligned_cols=161 Identities=19% Similarity=0.180 Sum_probs=86.1
Q ss_pred CcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHH-----------HHHHHHHHHHhCCCCcEEE
Q 019107 146 YLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLE-----------AKAYAELLEEEGITIPAWF 214 (346)
Q Consensus 146 ~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E-----------~~a~~~a~~~~~~~~pv~i 214 (346)
+|.||. |...+. .+.++..+ .++.|.++|||.|=+- +|...+ ...+.++.+....+.++.
T Consensus 5 TLRDG~-q~~~~~--f~~~~~~~----ia~~L~~~GVd~IEvG-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~- 75 (266)
T cd07944 5 TLRDGG-YVNNWD--FGDEFVKA----IYRALAAAGIDYVEIG-YRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIA- 75 (266)
T ss_pred CcccCc-cccCcc--CCHHHHHH----HHHHHHHCCCCEEEee-cCCCCccccCCCccCCCHHHHHHHHhhhccCCEEE-
Confidence 567774 555442 47777666 4556888999998332 333211 222222222210123333
Q ss_pred EEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECC--CChhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccC
Q 019107 215 SFNSKDGINVVSGDSILECASIADSCEQVVAVGINC--TSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVEST 292 (346)
Q Consensus 215 s~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC--~~p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~ 292 (346)
.+ +.... ..+.+ +..... .+++.|-+.+ ...+.+...++..++. ...+.+.+-. . .
T Consensus 76 ~~-~~~~~-----~~~~~-l~~a~~-~gv~~iri~~~~~~~~~~~~~i~~ak~~-G~~v~~~~~~-----------a--~ 133 (266)
T cd07944 76 VM-VDYGN-----DDIDL-LEPASG-SVVDMIRVAFHKHEFDEALPLIKAIKEK-GYEVFFNLMA-----------I--S 133 (266)
T ss_pred EE-ECCCC-----CCHHH-HHHHhc-CCcCEEEEecccccHHHHHHHHHHHHHC-CCeEEEEEEe-----------e--c
Confidence 22 22211 12333 333333 3677766655 3456666666666543 2233332211 0 0
Q ss_pred CCChHHHHHHHHHHHHcCCeEEeec--C-CCchHHHHHHHHHHcCCCC
Q 019107 293 GVRDEDFVSYIGKWRDAGASLFGGC--C-RTTPNTIKAISRVLSNKSL 337 (346)
Q Consensus 293 ~~~~~~~~~~~~~~~~~G~~ivGGC--C-Gt~P~hI~al~~~~~~~~~ 337 (346)
..+++.+.+.+++..+.|+..|.=| . ..+|+++..+-+.++...+
T Consensus 134 ~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~ 181 (266)
T cd07944 134 GYSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLD 181 (266)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC
Confidence 1357889999999999998876422 2 2489999999888876543
No 159
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=77.83 E-value=51 Score=31.66 Aligned_cols=140 Identities=14% Similarity=0.148 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcc----CCCHHH--------HHHHHHHHHHhCCCC-cEEEEEEEcCCCcccCCCCHHHH
Q 019107 167 KEFHRRRVLILANSGADLIAFET----IPNKLE--------AKAYAELLEEEGITI-PAWFSFNSKDGINVVSGDSILEC 233 (346)
Q Consensus 167 ~~~~~~~i~~l~~~gvD~i~~ET----~~~~~E--------~~a~~~a~~~~~~~~-pv~is~~~~~~~~l~~G~~~~~a 233 (346)
.++..+.++.+.++|+|++.+-. +-+.+. .+.+++.+++.+ . |+++.. .|.. ...
T Consensus 181 ~~~~~~~~~~~~~~G~d~i~~~d~~~~~isp~~f~e~~~P~~k~i~~~i~~~g--~~~~~lH~---------cG~~-~~~ 248 (343)
T PF01208_consen 181 TDFIIEYAKAQIEAGADGIFIFDSSGSLISPEMFEEFILPYLKKIIDAIKEAG--KDPVILHI---------CGNT-TPI 248 (343)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEETTGGGS-HHHHHHHTHHHHHHHHHHHHHHE--TE-EEEEE---------TTHG--GG
T ss_pred HHHHHHHHHHHHHhCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHhC--CCceEEEE---------CCch-HHH
Confidence 34455556677789999885443 112222 344566677765 5 777555 2322 224
Q ss_pred HHHhhcCCCceEEEECCCChhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcC---
Q 019107 234 ASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAG--- 310 (346)
Q Consensus 234 v~~~~~~~~~~avGvNC~~p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G--- 310 (346)
+..+.. .+++++.+. ....+..+.+++. .+..+ .-|- ++ ..... -++++..+.+++.++.+
T Consensus 249 ~~~l~~-~g~d~~~~~--~~~~~~~~~~~~~--~~~~l--~Gni----~~--~~~l~---gt~eei~~~v~~~i~~~~~~ 312 (343)
T PF01208_consen 249 LDDLAD-LGADVLSVD--EKVDLAEAKRKLG--DKIVL--MGNI----DP--VSLLF---GTPEEIEEEVKRLIEEGLAG 312 (343)
T ss_dssp HHHHHT-SS-SEEEE---TTS-HHHHHHHHT--TSSEE--EEEB-----G---GGGG---S-HHHHHHHHHHHHHHTHCT
T ss_pred HHHHHh-cCCCEEEEc--CCCCHHHHHHHhC--CCeEE--ECCC----Cc--ccccc---CCHHHHHHHHHHHHHHhcCC
Confidence 555544 467776653 2223334444432 12222 2221 00 01121 25888999999988743
Q ss_pred --CeEEeecCC----CchHHHHHHHHHHcC
Q 019107 311 --ASLFGGCCR----TTPNTIKAISRVLSN 334 (346)
Q Consensus 311 --~~ivGGCCG----t~P~hI~al~~~~~~ 334 (346)
--|+|--|+ |.++.|+++-+++++
T Consensus 313 ~~gfIl~~gc~ip~~~p~eni~a~~~a~~e 342 (343)
T PF01208_consen 313 GGGFILSPGCGIPPDTPPENIKAMVEAVKE 342 (343)
T ss_dssp SSSEEBEBSS---TTS-HHHHHHHHHHHHH
T ss_pred CCCEEEeCCCcCCCCcCHHHHHHHHHHHHh
Confidence 337887785 778999999888764
No 160
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=77.81 E-value=59 Score=33.35 Aligned_cols=98 Identities=18% Similarity=0.158 Sum_probs=62.8
Q ss_pred HHHHHhCCCCEE-EEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCC-
Q 019107 174 VLILANSGADLI-AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT- 251 (346)
Q Consensus 174 i~~l~~~gvD~i-~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~- 251 (346)
++...++|+|.| ++-.++++..++..++++++.| +.+..+++......- +=+-+.+.++.+.+ .+++.|.+-=+
T Consensus 101 v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G--~~v~~~i~~t~~p~~-t~e~~~~~a~~l~~-~Gad~I~i~Dt~ 176 (467)
T PRK14041 101 VKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHG--AHVQGAISYTVSPVH-TLEYYLEFARELVD-MGVDSICIKDMA 176 (467)
T ss_pred HHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCC--CEEEEEEEeccCCCC-CHHHHHHHHHHHHH-cCCCEEEECCcc
Confidence 445667899977 4557778888888899999877 444433322111110 11223344444444 46776665443
Q ss_pred ---ChhhHHHHHHHHhhhcCCcEEEee
Q 019107 252 ---SPRFIHGLILSVRKVTSKPVIIYP 275 (346)
Q Consensus 252 ---~p~~~~~~l~~l~~~~~~pl~vyp 275 (346)
.|..+..+++.+++..+.|+.+..
T Consensus 177 G~l~P~~v~~Lv~~lk~~~~vpI~~H~ 203 (467)
T PRK14041 177 GLLTPKRAYELVKALKKKFGVPVEVHS 203 (467)
T ss_pred CCcCHHHHHHHHHHHHHhcCCceEEEe
Confidence 499999999999988788887765
No 161
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=77.09 E-value=57 Score=29.50 Aligned_cols=115 Identities=23% Similarity=0.240 Sum_probs=67.7
Q ss_pred HHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEE---C
Q 019107 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI---N 249 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGv---N 249 (346)
|++...++|+|+++. |...+ .++++.++.+ .+++.+. .++.++.+... .+++.+++ .
T Consensus 75 ~~~~a~~aGA~fivs---p~~~~--~v~~~~~~~~--~~~~~G~-----------~t~~E~~~A~~--~Gad~vk~Fpa~ 134 (206)
T PRK09140 75 QVDRLADAGGRLIVT---PNTDP--EVIRRAVALG--MVVMPGV-----------ATPTEAFAALR--AGAQALKLFPAS 134 (206)
T ss_pred HHHHHHHcCCCEEEC---CCCCH--HHHHHHHHCC--CcEEccc-----------CCHHHHHHHHH--cCCCEEEECCCC
Confidence 566778899999985 33322 2344455544 7777652 35567766554 47788887 4
Q ss_pred CCChhhHHHHHHHHhhhc--CCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeEEeecCCCch-----
Q 019107 250 CTSPRFIHGLILSVRKVT--SKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTP----- 322 (346)
Q Consensus 250 C~~p~~~~~~l~~l~~~~--~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivGGCCGt~P----- 322 (346)
..+|+.+ +.++... +.|+ +|-.| .+++ .+.+|++.|+..++..-....
T Consensus 135 ~~G~~~l----~~l~~~~~~~ipv--vaiGG---------------I~~~----n~~~~~~aGa~~vav~s~l~~~~~~~ 189 (206)
T PRK09140 135 QLGPAGI----KALRAVLPPDVPV--FAVGG---------------VTPE----NLAPYLAAGAAGFGLGSALYRPGQSA 189 (206)
T ss_pred CCCHHHH----HHHHhhcCCCCeE--EEECC---------------CCHH----HHHHHHHCCCeEEEEehHhcccccCh
Confidence 4445444 4444332 3554 34344 2333 345588999988886655443
Q ss_pred HHHHHHHHHH
Q 019107 323 NTIKAISRVL 332 (346)
Q Consensus 323 ~hI~al~~~~ 332 (346)
+.|++.++.+
T Consensus 190 ~~i~~~a~~~ 199 (206)
T PRK09140 190 EEVAERARAF 199 (206)
T ss_pred HHHHHHHHHH
Confidence 6677666654
No 162
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=76.85 E-value=35 Score=33.18 Aligned_cols=115 Identities=16% Similarity=0.225 Sum_probs=65.7
Q ss_pred CCEEEEccCCCHHHHHH-HHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCChh------
Q 019107 182 ADLIAFETIPNKLEAKA-YAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPR------ 254 (346)
Q Consensus 182 vD~i~~ET~~~~~E~~a-~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~p~------ 254 (346)
.|+++-|.+..-.=... ..+.+.....+.|+++++.-. +-+.+.+++..+.. .++++|-+||..|.
T Consensus 36 ~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~g~------~p~~~~~aA~~~~~-~g~d~IdlN~gCP~~~v~~~ 108 (333)
T PRK11815 36 HALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLGGS------DPADLAEAAKLAED-WGYDEINLNVGCPSDRVQNG 108 (333)
T ss_pred CCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEeCC------CHHHHHHHHHHHHh-cCCCEEEEcCCCCHHHccCC
Confidence 38887776543210000 122233334468999998421 22345556665655 47899999997542
Q ss_pred -----------hHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeEE
Q 019107 255 -----------FIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLF 314 (346)
Q Consensus 255 -----------~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iv 314 (346)
.+..+++.+++....|+.++--.| |... .+.++..++++.+.+.|+..|
T Consensus 109 ~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g---------~~~~--~t~~~~~~~~~~l~~aG~d~i 168 (333)
T PRK11815 109 RFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIG---------IDDQ--DSYEFLCDFVDTVAEAGCDTF 168 (333)
T ss_pred CeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEee---------eCCC--cCHHHHHHHHHHHHHhCCCEE
Confidence 234666777776678888864222 1111 123456677777778887765
No 163
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=76.83 E-value=80 Score=31.08 Aligned_cols=97 Identities=15% Similarity=0.206 Sum_probs=59.4
Q ss_pred HHHHHhCCCCEEEEccCCC---------------HHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhh
Q 019107 174 VLILANSGADLIAFETIPN---------------KLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~---------------~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~ 238 (346)
++...++|+|.+-+-.-.+ ++.+..+++.+++.+ . .++|.+.+..+. +-+-+.+.++.+.
T Consensus 78 i~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g--~--~v~~~~ed~~r~-~~~~l~~~~~~~~ 152 (365)
T TIGR02660 78 IEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRG--L--FVSVGGEDASRA-DPDFLVELAEVAA 152 (365)
T ss_pred HHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCC--C--EEEEeecCCCCC-CHHHHHHHHHHHH
Confidence 4567778999876553332 334446677777766 3 356777655443 2223344444444
Q ss_pred cCCCceEEEECCC----ChhhHHHHHHHHhhhcCCcEEEeeC
Q 019107 239 SCEQVVAVGINCT----SPRFIHGLILSVRKVTSKPVIIYPN 276 (346)
Q Consensus 239 ~~~~~~avGvNC~----~p~~~~~~l~~l~~~~~~pl~vypN 276 (346)
+ .+++.|.+-=+ .|+.+..+++.+++..+.|+.+...
T Consensus 153 ~-~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~v~l~~H~H 193 (365)
T TIGR02660 153 E-AGADRFRFADTVGILDPFSTYELVRALRQAVDLPLEMHAH 193 (365)
T ss_pred H-cCcCEEEEcccCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 4 36665544322 4999999999998877788877653
No 164
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=76.78 E-value=53 Score=29.06 Aligned_cols=66 Identities=11% Similarity=0.159 Sum_probs=43.0
Q ss_pred HHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEEC
Q 019107 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGIN 249 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvN 249 (346)
+++.+.++|+|++.+=-.........+++.+++.+ +++++.+.- ..+++.++.... . .+++.++++
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g--~~~~~~~~~-------~~t~~~~~~~~~-~-~g~d~v~~~ 133 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHG--KEVQVDLIN-------VKDKVKRAKELK-E-LGADYIGVH 133 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcC--CEEEEEecC-------CCChHHHHHHHH-H-cCCCEEEEc
Confidence 67778889999997544434445567788888866 888886421 233444444433 3 378888886
No 165
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=76.72 E-value=53 Score=28.98 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=67.5
Q ss_pred HHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCC
Q 019107 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTS 252 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~ 252 (346)
+++.+.+.|+|++..-. .. ..++++.++.+ .|+++.. .++.++...++ .+++.+++-=+.
T Consensus 68 ~~~~a~~~Ga~~i~~p~--~~---~~~~~~~~~~~--~~~i~gv-----------~t~~e~~~A~~--~Gad~i~~~p~~ 127 (190)
T cd00452 68 QADAAIAAGAQFIVSPG--LD---PEVVKAANRAG--IPLLPGV-----------ATPTEIMQALE--LGADIVKLFPAE 127 (190)
T ss_pred HHHHHHHcCCCEEEcCC--CC---HHHHHHHHHcC--CcEECCc-----------CCHHHHHHHHH--CCCCEEEEcCCc
Confidence 56667779999997432 11 23555566644 7777533 26788877664 478888874333
Q ss_pred hhhHHHHHHHHhhhc-CCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeEEeecCCCchHHH
Q 019107 253 PRFIHGLILSVRKVT-SKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTI 325 (346)
Q Consensus 253 p~~~~~~l~~l~~~~-~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivGGCCGt~P~hI 325 (346)
+. ....++.++... ..|+++ -.| .+++ .+.+|.+.|+..++.+.....+.+
T Consensus 128 ~~-g~~~~~~l~~~~~~~p~~a--~GG---------------I~~~----n~~~~~~~G~~~v~v~s~i~~~~~ 179 (190)
T cd00452 128 AV-GPAYIKALKGPFPQVRFMP--TGG---------------VSLD----NAAEWLAAGVVAVGGGSLLPKDAV 179 (190)
T ss_pred cc-CHHHHHHHHhhCCCCeEEE--eCC---------------CCHH----HHHHHHHCCCEEEEEchhcchhhh
Confidence 33 456667665443 244433 222 2333 345589999999998877774433
No 166
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=76.70 E-value=68 Score=30.26 Aligned_cols=65 Identities=15% Similarity=0.130 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhCCCCEEEEc-cC--CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhc
Q 019107 169 FHRRRVLILANSGADLIAFE-TI--PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS 239 (346)
Q Consensus 169 ~~~~~i~~l~~~gvD~i~~E-T~--~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~ 239 (346)
++.+.++.+.+.|+|.|.+- |+ -++.++...++.+++.-.+ +-++|.+.++. |..++.++..++.
T Consensus 150 ~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~--~~i~~H~Hnd~----GlA~AN~laA~~a 217 (274)
T cd07938 150 RVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFPD--EKLALHFHDTR----GQALANILAALEA 217 (274)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHCCC--CeEEEEECCCC----ChHHHHHHHHHHh
Confidence 34445566677899998765 43 3677888888888874212 56677777665 5556666666653
No 167
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=76.62 E-value=76 Score=30.76 Aligned_cols=66 Identities=11% Similarity=0.132 Sum_probs=42.8
Q ss_pred HHHHHHHHhCCCCEEEEcc-CCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEE
Q 019107 171 RRRVLILANSGADLIAFET-IPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI 248 (346)
Q Consensus 171 ~~~i~~l~~~gvD~i~~ET-~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGv 248 (346)
.++++.+.++|+|+|.+-+ ..+.......++.+++...++|+++ + ...+.+++...++ .++++|-+
T Consensus 96 ~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~-------G---~v~t~~~A~~l~~--aGaD~I~v 162 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIA-------G---NVVTAEAARDLID--AGADGVKV 162 (325)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEE-------C---CCCCHHHHHHHHh--cCCCEEEE
Confidence 4578889999999998764 3344556666777777542467765 2 2345666665554 46777655
No 168
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=76.39 E-value=12 Score=36.07 Aligned_cols=115 Identities=22% Similarity=0.221 Sum_probs=61.6
Q ss_pred hCCCC-EEEEccCCCHHHHHH----HHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCC-
Q 019107 179 NSGAD-LIAFETIPNKLEAKA----YAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTS- 252 (346)
Q Consensus 179 ~~gvD-~i~~ET~~~~~E~~a----~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~- 252 (346)
+.|++ +.+-|.+.. .++.. ..+.+.....+.|+++.+.-. +.+.+.+++..+.. .++++|-+||..
T Consensus 19 ~~g~~~~~~temi~a-~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g~------~~~~~~~aa~~~~~-~~~~~IDlN~GCP 90 (309)
T PF01207_consen 19 EFGADDLTYTEMISA-KAILRSNKKTIRLLPFLPNERPLIVQLFGN------DPEDLAEAAEIVAE-LGFDGIDLNMGCP 90 (309)
T ss_dssp CCTSSSBEE-S-EEH-HHHHCT-HHHHHHS-GCC-T-TEEEEEE-S-------HHHHHHHHHHHCC-TT-SEEEEEE---
T ss_pred HHCCCeEEEcCCEEE-CcccccccceeecccccccccceeEEEeec------cHHHHHHHHHhhhc-cCCcEEeccCCCC
Confidence 35665 777786653 22211 122223333347999999532 33455667776654 589999999963
Q ss_pred ----------------hhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeEE
Q 019107 253 ----------------PRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLF 314 (346)
Q Consensus 253 ----------------p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iv 314 (346)
|+.+..+++.+.+..+.|+.+.--.|. . -+++++.++++.+.+.|+..|
T Consensus 91 ~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~---------~----~~~~~~~~~~~~l~~~G~~~i 155 (309)
T PF01207_consen 91 APKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGW---------D----DSPEETIEFARILEDAGVSAI 155 (309)
T ss_dssp SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESEC---------T------CHHHHHHHHHHHHTT--EE
T ss_pred HHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEeccccc---------c----cchhHHHHHHHHhhhcccceE
Confidence 344566777777777888877644431 1 124556667777777776665
No 169
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=76.29 E-value=72 Score=32.72 Aligned_cols=66 Identities=11% Similarity=0.098 Sum_probs=45.8
Q ss_pred HHHHHHHHhCCCCEEEEcc-CCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEE
Q 019107 171 RRRVLILANSGADLIAFET-IPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI 248 (346)
Q Consensus 171 ~~~i~~l~~~gvD~i~~ET-~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGv 248 (346)
.++++.|.++|+|+|++.+ -.+...+...++.+++...+.|+++. ++.+.+++...++ .++++|.+
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g----------~v~t~e~a~~l~~--aGad~i~v 296 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAG----------NVATAEAARALIE--AGADAVKV 296 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEe----------ccCCHHHHHHHHH--cCCCEEEE
Confidence 5678889999999999885 35555555666666664336888872 4556777777664 36777755
No 170
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=76.28 E-value=71 Score=30.23 Aligned_cols=87 Identities=20% Similarity=0.199 Sum_probs=50.4
Q ss_pred HHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhc-CCC-ceEEEECCC-
Q 019107 175 LILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS-CEQ-VVAVGINCT- 251 (346)
Q Consensus 175 ~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~-~~~-~~avGvNC~- 251 (346)
+.+.++|||-+++=-+|- +|...+.+++++.+ +-.+ .|. .-++..+-++.+.. ..+ +-.++.+-+
T Consensus 116 ~~~~~~GvdGlivpDLP~-ee~~~~~~~~~~~g--i~~I-~lv--------aPtt~~~rl~~i~~~a~GFiY~vs~~GvT 183 (265)
T COG0159 116 RRAKEAGVDGLLVPDLPP-EESDELLKAAEKHG--IDPI-FLV--------APTTPDERLKKIAEAASGFIYYVSRMGVT 183 (265)
T ss_pred HHHHHcCCCEEEeCCCCh-HHHHHHHHHHHHcC--CcEE-EEe--------CCCCCHHHHHHHHHhCCCcEEEEeccccc
Confidence 346679999999777663 46667778888877 3322 121 11122233333322 223 223444332
Q ss_pred C---h--hhHHHHHHHHhhhcCCcEEE
Q 019107 252 S---P--RFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 252 ~---p--~~~~~~l~~l~~~~~~pl~v 273 (346)
+ + ..+..+++.++++++.|+++
T Consensus 184 G~~~~~~~~~~~~v~~vr~~~~~Pv~v 210 (265)
T COG0159 184 GARNPVSADVKELVKRVRKYTDVPVLV 210 (265)
T ss_pred CCCcccchhHHHHHHHHHHhcCCCeEE
Confidence 2 2 34788999999999999866
No 171
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=76.28 E-value=60 Score=29.42 Aligned_cols=144 Identities=19% Similarity=0.175 Sum_probs=82.7
Q ss_pred CChHHHHHHHHHHHHhhcceeeccccccCHHhHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 019107 52 SSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISS 131 (346)
Q Consensus 52 ~~Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~ 131 (346)
-.++.++........+|+++|....-..........+.+.+ ++.....+.++.+++.
T Consensus 64 ~~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~---~~~~~~~~~v~~ak~~-------------------- 120 (237)
T PF00682_consen 64 ANEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSRE---EALERIEEAVKYAKEL-------------------- 120 (237)
T ss_dssp SCHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHH---HHHHHHHHHHHHHHHT--------------------
T ss_pred ehHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHH---HHHHHHHHHHHHHHhc--------------------
Confidence 46677888777778899999886644433333445566544 4444444444444331
Q ss_pred CCcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEc-cCC--CHHHHHHHHHHHHHhCC
Q 019107 132 RPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFE-TIP--NKLEAKAYAELLEEEGI 208 (346)
Q Consensus 132 ~~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~E-T~~--~~~E~~a~~~a~~~~~~ 208 (346)
...| ++++.- ... .+.+++.+ .++.+.+.|+|.|.+- |+. .+.++.-++..+++.-.
T Consensus 121 -g~~v--~~~~~~---------~~~----~~~~~~~~----~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~ 180 (237)
T PF00682_consen 121 -GYEV--AFGCED---------ASR----TDPEELLE----LAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALP 180 (237)
T ss_dssp -TSEE--EEEETT---------TGG----SSHHHHHH----HHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHST
T ss_pred -CCce--EeCccc---------ccc----ccHHHHHH----HHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhcc
Confidence 2233 222211 111 35555555 4556666799988765 554 66788888888887531
Q ss_pred CCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEE
Q 019107 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAV 246 (346)
Q Consensus 209 ~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~av 246 (346)
+ +-+.|.+.++. |..++.++..++. |++.|
T Consensus 181 ~--~~l~~H~Hnd~----Gla~An~laA~~a--Ga~~i 210 (237)
T PF00682_consen 181 D--IPLGFHAHNDL----GLAVANALAALEA--GADRI 210 (237)
T ss_dssp T--SEEEEEEBBTT----S-HHHHHHHHHHT--T-SEE
T ss_pred C--CeEEEEecCCc----cchhHHHHHHHHc--CCCEE
Confidence 1 77788887764 6667777777753 44443
No 172
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=76.18 E-value=21 Score=34.22 Aligned_cols=62 Identities=13% Similarity=0.226 Sum_probs=43.7
Q ss_pred HHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECC
Q 019107 176 ILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (346)
Q Consensus 176 ~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC 250 (346)
...++|+|+|++..|+ ++|++.+++.+++.. ..+.+-.+ .|-++..+.+++. .+++.|.+--
T Consensus 214 eal~~gaDiI~LDnm~-~e~vk~av~~~~~~~--~~v~ieaS--------GGI~~~ni~~yA~--tGvD~Is~ga 275 (289)
T PRK07896 214 EVLAEGAELVLLDNFP-VWQTQEAVQRRDARA--PTVLLESS--------GGLTLDTAAAYAE--TGVDYLAVGA 275 (289)
T ss_pred HHHHcCCCEEEeCCCC-HHHHHHHHHHHhccC--CCEEEEEE--------CCCCHHHHHHHHh--cCCCEEEeCh
Confidence 3456999999999986 999999999776643 22333331 4677777777664 5788887755
No 173
>PRK12999 pyruvate carboxylase; Reviewed
Probab=76.09 E-value=54 Score=37.48 Aligned_cols=86 Identities=20% Similarity=0.343 Sum_probs=53.4
Q ss_pred EEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCC---CHHHHHHHHHHHHHhCCCCc
Q 019107 135 LVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIP---NKLEAKAYAELLEEEGITIP 211 (346)
Q Consensus 135 ~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~---~~~E~~a~~~a~~~~~~~~p 211 (346)
.+-++++..|+.+.+ +++.| +. ++|.+.++.+.+.|+|.|.+-.+. .+.++..++.++++.- ++|
T Consensus 669 ~~~~~i~ytg~~~d~---~~~~~----~~----~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~-~ip 736 (1146)
T PRK12999 669 IAEAAICYTGDILDP---ARAKY----DL----DYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEV-DLP 736 (1146)
T ss_pred eEEEEEEEEecCCCC---CCCCC----CH----HHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHc-CCe
Confidence 344666666654431 22222 33 477778888899999999876443 6778888899888753 455
Q ss_pred EEEEEEEcCCCcccCCCCHHHHHHHhh
Q 019107 212 AWFSFNSKDGINVVSGDSILECASIAD 238 (346)
Q Consensus 212 v~is~~~~~~~~l~~G~~~~~av~~~~ 238 (346)
|.|.++++. |..++.++..++
T Consensus 737 --i~~H~Hnt~----Gla~an~laA~~ 757 (1146)
T PRK12999 737 --IHLHTHDTS----GNGLATYLAAAE 757 (1146)
T ss_pred --EEEEeCCCC----chHHHHHHHHHH
Confidence 566666543 444444444443
No 174
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=76.07 E-value=70 Score=30.09 Aligned_cols=152 Identities=20% Similarity=0.199 Sum_probs=81.7
Q ss_pred ChHHHHHHHHHHHHhhcceeeccccccCHHhHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCC
Q 019107 53 SPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSR 132 (346)
Q Consensus 53 ~Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~ 132 (346)
+.+..++.-+.++++|.+-|..+--..-... ++.++-.++.+.+++.+ .++
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~-----Lt~~Er~~l~~~~~~~~------------------------~~~ 70 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLGSTGEFYS-----LTDEERKELLEIVVEAA------------------------AGR 70 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESSTTTTGGG-----S-HHHHHHHHHHHHHHH------------------------TTS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCccccc-----CCHHHHHHHHHHHHHHc------------------------cCc
Confidence 5677888888899999996665543322222 34455556655544432 122
Q ss_pred CcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcc----CCCHHHHHHHHHHHHHhCC
Q 019107 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFET----IPNKLEAKAYAELLEEEGI 208 (346)
Q Consensus 133 ~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET----~~~~~E~~a~~~a~~~~~~ 208 (346)
-.+|+| +|.. +.++..+ +++...+.|+|.+++-. -++.+++....+.+.+..
T Consensus 71 ~~vi~g-v~~~------------------st~~~i~----~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~- 126 (289)
T PF00701_consen 71 VPVIAG-VGAN------------------STEEAIE----LARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADAT- 126 (289)
T ss_dssp SEEEEE-EESS------------------SHHHHHH----HHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHS-
T ss_pred eEEEec-Ccch------------------hHHHHHH----HHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhc-
Confidence 345555 4332 4455555 55667779999998642 137778777777666654
Q ss_pred CCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCChhhHHHHHH
Q 019107 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLIL 261 (346)
Q Consensus 209 ~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~p~~~~~~l~ 261 (346)
++|+++--.....+ ..-++....+.. +..++.++=..+.....+..+++
T Consensus 127 ~~pi~iYn~P~~tg---~~ls~~~l~~L~-~~~nv~giK~s~~~~~~~~~~~~ 175 (289)
T PF00701_consen 127 DLPIIIYNNPARTG---NDLSPETLARLA-KIPNVVGIKDSSGDLERLIQLLR 175 (289)
T ss_dssp SSEEEEEEBHHHHS---STSHHHHHHHHH-TSTTEEEEEESSSBHHHHHHHHH
T ss_pred CCCEEEEECCCccc---cCCCHHHHHHHh-cCCcEEEEEcCchhHHHHHHHhh
Confidence 69999754321112 223444444433 34444443333334444444433
No 175
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=76.04 E-value=18 Score=33.61 Aligned_cols=96 Identities=25% Similarity=0.269 Sum_probs=63.6
Q ss_pred HHHHHhCCCCEEEEccCCCHHHHHHH-HHHHHHhCCCCcEEEEEEEcCCCcc--cCCCCHHHHHHHhhcCCCceEEEECC
Q 019107 174 VLILANSGADLIAFETIPNKLEAKAY-AELLEEEGITIPAWFSFNSKDGINV--VSGDSILECASIADSCEQVVAVGINC 250 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~-~~a~~~~~~~~pv~is~~~~~~~~l--~~G~~~~~av~~~~~~~~~~avGvNC 250 (346)
+++|..-|+.=|.+-| |...+.-.. .+.+.+.|.+...+.+|-..++... .+.+++.+++..++. .+++||-+-|
T Consensus 112 ~~AL~alg~~RIalvT-PY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~-~~aDAifisC 189 (239)
T TIGR02990 112 VDGLAALGVRRISLLT-PYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFD-PDADALFLSC 189 (239)
T ss_pred HHHHHHcCCCEEEEEC-CCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcC-CCCCEEEEeC
Confidence 4456666888888887 666665544 4557777766666667666555443 244556666665544 5799999999
Q ss_pred CChhhHHHHHHHHhhhcCCcEE
Q 019107 251 TSPRFIHGLILSVRKVTSKPVI 272 (346)
Q Consensus 251 ~~p~~~~~~l~~l~~~~~~pl~ 272 (346)
+.- ....+++.+.+...+|++
T Consensus 190 TnL-rt~~vi~~lE~~lGkPVl 210 (239)
T TIGR02990 190 TAL-RAATCAQRIEQAIGKPVV 210 (239)
T ss_pred CCc-hhHHHHHHHHHHHCCCEE
Confidence 962 234677777777789973
No 176
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=75.81 E-value=82 Score=30.71 Aligned_cols=74 Identities=16% Similarity=0.178 Sum_probs=40.6
Q ss_pred HHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcC-CCceEEEECCCC-----------hhhHHHHHHHHhhh
Q 019107 199 YAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSC-EQVVAVGINCTS-----------PRFIHGLILSVRKV 266 (346)
Q Consensus 199 ~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~-~~~~avGvNC~~-----------p~~~~~~l~~l~~~ 266 (346)
.++-+++...+.|+++|+.-.. ....+.+.+|.++.++.. ..++++=+|=+. |+.+..+++.+++.
T Consensus 124 ~l~~i~~~~~~~~i~vsi~~~~--~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~ 201 (335)
T TIGR01036 124 LVERLKRARYKGPIGINIGKNK--DTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQE 201 (335)
T ss_pred HHHHHhhccCCCcEEEEEeCCC--CCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHH
Confidence 3433433333589999985331 122334455555544321 136777776432 34567777777665
Q ss_pred cC-------CcEEEe
Q 019107 267 TS-------KPVIIY 274 (346)
Q Consensus 267 ~~-------~pl~vy 274 (346)
.+ +|+++.
T Consensus 202 ~~~~~~~~~~Pv~vK 216 (335)
T TIGR01036 202 QDGLRRVHRVPVLVK 216 (335)
T ss_pred HHhhhhccCCceEEE
Confidence 54 888875
No 177
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=75.71 E-value=21 Score=33.88 Aligned_cols=49 Identities=20% Similarity=0.307 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEc-cCC---------CHHH-HHHHHHHHHHhCCCCcEEEEEEE
Q 019107 168 EFHRRRVLILANSGADLIAFE-TIP---------NKLE-AKAYAELLEEEGITIPAWFSFNS 218 (346)
Q Consensus 168 ~~~~~~i~~l~~~gvD~i~~E-T~~---------~~~E-~~a~~~a~~~~~~~~pv~is~~~ 218 (346)
+.|.+.++.+. +++|+|=+. ..| +..+ ...+++++++.. ++|+++-++.
T Consensus 112 ~d~~~~a~~~~-~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~~-~~Pv~vKL~p 171 (295)
T PF01180_consen 112 EDWAELAKRLE-AGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREAV-DIPVFVKLSP 171 (295)
T ss_dssp HHHHHHHHHHH-HHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHHH-SSEEEEEE-S
T ss_pred HHHHHHHHHhc-CcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhcc-CCCEEEEecC
Confidence 34555666666 789988664 222 2233 333556666653 6999999875
No 178
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=75.57 E-value=71 Score=29.88 Aligned_cols=90 Identities=17% Similarity=0.220 Sum_probs=56.7
Q ss_pred HHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCC-ceEEEECCC
Q 019107 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQ-VVAVGINCT 251 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~-~~avGvNC~ 251 (346)
-++.+.++|+|.+++=-.|. +|....++.+++.+ +..+..++ ..++.+.+...++...+ +-.+.+|=.
T Consensus 107 f~~~~~~aGvdgviipDlp~-ee~~~~~~~~~~~g--l~~i~lv~--------P~T~~eri~~i~~~~~gfiy~vs~~G~ 175 (256)
T TIGR00262 107 FYAKCKEVGVDGVLVADLPL-EESGDLVEAAKKHG--VKPIFLVA--------PNADDERLKQIAEKSQGFVYLVSRAGV 175 (256)
T ss_pred HHHHHHHcCCCEEEECCCCh-HHHHHHHHHHHHCC--CcEEEEEC--------CCCCHHHHHHHHHhCCCCEEEEECCCC
Confidence 36668889999998776664 68888899999977 55544443 23344444444433333 334455521
Q ss_pred -C-----hhhHHHHHHHHhhhcCCcEEE
Q 019107 252 -S-----PRFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 252 -~-----p~~~~~~l~~l~~~~~~pl~v 273 (346)
+ +..+...++++++.++.|+.+
T Consensus 176 TG~~~~~~~~~~~~i~~lr~~~~~pi~v 203 (256)
T TIGR00262 176 TGARNRAASALNELVKRLKAYSAKPVLV 203 (256)
T ss_pred CCCcccCChhHHHHHHHHHhhcCCCEEE
Confidence 1 245778888888877778665
No 179
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=75.50 E-value=34 Score=31.21 Aligned_cols=97 Identities=21% Similarity=0.206 Sum_probs=54.1
Q ss_pred HHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccC------CCCHHHHHHHhhcCCCceEEE
Q 019107 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVS------GDSILECASIADSCEQVVAVG 247 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~------G~~~~~av~~~~~~~~~~avG 247 (346)
++.+.+.|+|.+++-|.. +.+...+.++.+..+ ...+++++.+.+..-... +.++.+.+..+.. .++..+-
T Consensus 91 ~~~~~~~Ga~~v~iGs~~-~~~~~~~~~i~~~~g-~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~-~G~~~i~ 167 (241)
T PRK13585 91 AASLLDLGVDRVILGTAA-VENPEIVRELSEEFG-SERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEE-LGAGSIL 167 (241)
T ss_pred HHHHHHcCCCEEEEChHH-hhChHHHHHHHHHhC-CCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHH-cCCCEEE
Confidence 344556899999987643 333344555556655 456888888754322212 3366777777654 3544433
Q ss_pred ---ECCCC--hhhHHHHHHHHhhhcCCcEEE
Q 019107 248 ---INCTS--PRFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 248 ---vNC~~--p~~~~~~l~~l~~~~~~pl~v 273 (346)
+...+ ...-..+++++.+..+.|+++
T Consensus 168 ~~~~~~~g~~~g~~~~~i~~i~~~~~iPvia 198 (241)
T PRK13585 168 FTNVDVEGLLEGVNTEPVKELVDSVDIPVIA 198 (241)
T ss_pred EEeecCCCCcCCCCHHHHHHHHHhCCCCEEE
Confidence 32211 111234567777666788655
No 180
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=75.50 E-value=31 Score=33.00 Aligned_cols=28 Identities=14% Similarity=0.116 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhhcceeeccccccCHH
Q 019107 55 HLVRKVHLDYLDAGANIIITASYQATIQ 82 (346)
Q Consensus 55 e~V~~iH~~yl~AGA~iI~TnTy~as~~ 82 (346)
+...+.|.++.+.|+-+|+|-.-..++.
T Consensus 33 ~~~~~~y~~ra~gg~glii~e~~~v~~~ 60 (327)
T cd02803 33 DELIEYYEERAKGGVGLIITEAAYVDPE 60 (327)
T ss_pred HHHHHHHHHHhCcCCcEEEECcEEEcCc
Confidence 5666777777777887666554444433
No 181
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=75.14 E-value=24 Score=35.33 Aligned_cols=61 Identities=15% Similarity=0.150 Sum_probs=40.3
Q ss_pred CCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCChh----------------hHHHHHHHHhhhcCCcEE
Q 019107 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPR----------------FIHGLILSVRKVTSKPVI 272 (346)
Q Consensus 209 ~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~p~----------------~~~~~l~~l~~~~~~pl~ 272 (346)
+.|+++|+.... +.+.+.+++..++. .++++|=+|++.|. .+..+++.+++..++|+.
T Consensus 99 ~~p~i~si~g~~-----~~~~~~~~a~~~~~-~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~ 172 (420)
T PRK08318 99 DRALIASIMVEC-----NEEEWKEIAPLVEE-TGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVI 172 (420)
T ss_pred CceEEEEeccCC-----CHHHHHHHHHHHHh-cCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEE
Confidence 478888884210 12335566666655 46889999986543 556667777776789998
Q ss_pred Eee
Q 019107 273 IYP 275 (346)
Q Consensus 273 vyp 275 (346)
|.-
T Consensus 173 vKl 175 (420)
T PRK08318 173 VKL 175 (420)
T ss_pred EEc
Confidence 864
No 182
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=74.83 E-value=82 Score=33.33 Aligned_cols=65 Identities=11% Similarity=0.129 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhCCCCEEEEccC---CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhh
Q 019107 167 KEFHRRRVLILANSGADLIAFETI---PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (346)
Q Consensus 167 ~~~~~~~i~~l~~~gvD~i~~ET~---~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~ 238 (346)
.++|.+.++.+.+.|+|.|.+--+ -.+.++..++.++++.- ++| |.|.++++. |..++..+..++
T Consensus 154 ~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~-~~p--i~~H~Hnt~----GlA~An~laAie 221 (593)
T PRK14040 154 LQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRV-DVP--LHLHCHATT----GLSTATLLKAIE 221 (593)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhc-CCe--EEEEECCCC----chHHHHHHHHHH
Confidence 467788888899999999987633 36778888898888743 455 456666543 545555555554
No 183
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=74.46 E-value=74 Score=29.55 Aligned_cols=64 Identities=14% Similarity=0.231 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhCCCCEEEE-ccCC--CHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhc
Q 019107 169 FHRRRVLILANSGADLIAF-ETIP--NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS 239 (346)
Q Consensus 169 ~~~~~i~~l~~~gvD~i~~-ET~~--~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~ 239 (346)
++.+.++.+.+.|+|.|.+ -|+. .+.++...+..+++. .|+-+.|.+.++. |..++.++..+..
T Consensus 140 ~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~---~~~~l~~H~Hn~~----Gla~An~laAi~a 206 (259)
T cd07939 140 FLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAA---TDLPLEFHAHNDL----GLATANTLAAVRA 206 (259)
T ss_pred HHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHh---cCCeEEEEecCCC----ChHHHHHHHHHHh
Confidence 4445666677789998864 3443 677888888888874 3344677777665 5566767766653
No 184
>PLN02591 tryptophan synthase
Probab=74.05 E-value=78 Score=29.62 Aligned_cols=89 Identities=19% Similarity=0.268 Sum_probs=53.4
Q ss_pred HHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCce-EEEECCC-
Q 019107 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVV-AVGINCT- 251 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~-avGvNC~- 251 (346)
++.+.++|||-+++=-+| ++|.....+.+++.+ +..+.-++.. ++-..+-.......+.. .|+.+=+
T Consensus 99 ~~~~~~aGv~GviipDLP-~ee~~~~~~~~~~~g--l~~I~lv~Pt--------t~~~ri~~ia~~~~gFIY~Vs~~GvT 167 (250)
T PLN02591 99 MATIKEAGVHGLVVPDLP-LEETEALRAEAAKNG--IELVLLTTPT--------TPTERMKAIAEASEGFVYLVSSTGVT 167 (250)
T ss_pred HHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHcC--CeEEEEeCCC--------CCHHHHHHHHHhCCCcEEEeeCCCCc
Confidence 455778999999988777 478888999899877 5444333221 11111222222222322 3343332
Q ss_pred -----ChhhHHHHHHHHhhhcCCcEEE
Q 019107 252 -----SPRFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 252 -----~p~~~~~~l~~l~~~~~~pl~v 273 (346)
.|..+...++.++++++.|+++
T Consensus 168 G~~~~~~~~~~~~i~~vk~~~~~Pv~v 194 (250)
T PLN02591 168 GARASVSGRVESLLQELKEVTDKPVAV 194 (250)
T ss_pred CCCcCCchhHHHHHHHHHhcCCCceEE
Confidence 1566777788888888888776
No 185
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=74.03 E-value=84 Score=32.68 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhCCCCEEEEc-cC--CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCC
Q 019107 168 EFHRRRVLILANSGADLIAFE-TI--PNKLEAKAYAELLEEEGITIPAWFSFNSKDGI 222 (346)
Q Consensus 168 ~~~~~~i~~l~~~gvD~i~~E-T~--~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~ 222 (346)
++..+.++.+.+.|+|.|.+- |+ ..+.+...+++.+++. ..+.++|.|.++.
T Consensus 158 ~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~---~~v~i~~H~HND~ 212 (524)
T PRK12344 158 EYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAA---PGVPLGIHAHNDS 212 (524)
T ss_pred HHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHh---cCCeEEEEECCCC
Confidence 345556667778999988754 43 4677888888888874 3567888888763
No 186
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=73.90 E-value=1e+02 Score=30.87 Aligned_cols=70 Identities=20% Similarity=0.200 Sum_probs=44.0
Q ss_pred HHHHHHhCCCCEEEEcc-C--------------CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHh
Q 019107 173 RVLILANSGADLIAFET-I--------------PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIA 237 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET-~--------------~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~ 237 (346)
.++.+.+.|+|+|=+-. - .+.+.+..+++++++.. ++|+++-++. +-+++.+.++.+
T Consensus 118 ~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~-~~Pv~vKl~p-------~~~~~~~~a~~~ 189 (420)
T PRK08318 118 IAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS-RLPVIVKLTP-------NITDIREPARAA 189 (420)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc-CCcEEEEcCC-------CcccHHHHHHHH
Confidence 34455567899886541 1 34557777788887754 6999998863 223466777766
Q ss_pred hcCCCceEEE-ECCC
Q 019107 238 DSCEQVVAVG-INCT 251 (346)
Q Consensus 238 ~~~~~~~avG-vNC~ 251 (346)
.+ .++++|- +|-.
T Consensus 190 ~~-~Gadgi~~~Nt~ 203 (420)
T PRK08318 190 KR-GGADAVSLINTI 203 (420)
T ss_pred HH-CCCCEEEEeccc
Confidence 55 4667644 4443
No 187
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=73.73 E-value=39 Score=31.27 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhCCC--CEEEEc-----cCCCHHHHHHHHHHHHHhCCCCcEEEE-EEEcC
Q 019107 168 EFHRRRVLILANSGA--DLIAFE-----TIPNKLEAKAYAELLEEEGITIPAWFS-FNSKD 220 (346)
Q Consensus 168 ~~~~~~i~~l~~~gv--D~i~~E-----T~~~~~E~~a~~~a~~~~~~~~pv~is-~~~~~ 220 (346)
..|.+.++.|.+.|+ |.|=++ ..+++.+++..++.+.+.+ +||+|| +.+..
T Consensus 136 ~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~~~~~g--~pi~iTE~dv~~ 194 (254)
T smart00633 136 QAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRFASLG--LEIQITELDISG 194 (254)
T ss_pred HHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHHHHHcC--CceEEEEeecCC
Confidence 467778888888765 666554 2378889999999888876 999998 66643
No 188
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=73.45 E-value=94 Score=30.30 Aligned_cols=77 Identities=16% Similarity=0.123 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhCCCCEEEEc-cCC---------CHHHHHHHHHHHHHhC------CCCcEEEEEEEcCCCcccCCCCHH
Q 019107 168 EFHRRRVLILANSGADLIAFE-TIP---------NKLEAKAYAELLEEEG------ITIPAWFSFNSKDGINVVSGDSIL 231 (346)
Q Consensus 168 ~~~~~~i~~l~~~gvD~i~~E-T~~---------~~~E~~a~~~a~~~~~------~~~pv~is~~~~~~~~l~~G~~~~ 231 (346)
+.|.+.++.+.+ .+|+|-+. +-| +.+.+..+++++++.- ..+|+|+-++..-+ -+.+.
T Consensus 154 ~dy~~~~~~~~~-~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~-----~~~i~ 227 (335)
T TIGR01036 154 EDYAACLRKLGP-LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLT-----ESDLE 227 (335)
T ss_pred HHHHHHHHHHhh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCC-----HHHHH
Confidence 345556666654 58998765 222 3344555566665432 13899998865321 11466
Q ss_pred HHHHHhhcCCCceE-EEECCC
Q 019107 232 ECASIADSCEQVVA-VGINCT 251 (346)
Q Consensus 232 ~av~~~~~~~~~~a-vGvNC~ 251 (346)
+.++.+.+ .++++ +.+|..
T Consensus 228 ~ia~~~~~-~GadGi~l~NT~ 247 (335)
T TIGR01036 228 DIADSLVE-LGIDGVIATNTT 247 (335)
T ss_pred HHHHHHHH-hCCcEEEEECCC
Confidence 67776655 46776 567876
No 189
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=73.42 E-value=23 Score=33.81 Aligned_cols=65 Identities=11% Similarity=0.113 Sum_probs=44.0
Q ss_pred HHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECC
Q 019107 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC 250 (346)
|+....++|+|+|++..| ++++++.+++.+++.. ..+.+..+ .|-++..+.++.. .+++.|-+-.
T Consensus 201 qa~ea~~agaDiI~LDn~-~~e~l~~av~~~~~~~--~~~~leaS--------GGI~~~ni~~yA~--tGvD~Is~ga 265 (284)
T PRK06096 201 EAIAALRAQPDVLQLDKF-SPQQATEIAQIAPSLA--PHCTLSLA--------GGINLNTLKNYAD--CGIRLFITSA 265 (284)
T ss_pred HHHHHHHcCCCEEEECCC-CHHHHHHHHHHhhccC--CCeEEEEE--------CCCCHHHHHHHHh--cCCCEEEECc
Confidence 344456789999999987 7888888888776433 23444442 5677777777664 4778774443
No 190
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=73.39 E-value=51 Score=33.17 Aligned_cols=66 Identities=6% Similarity=-0.013 Sum_probs=42.8
Q ss_pred HHHHHHHHhCCCCEEEEcc-CCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEE
Q 019107 171 RRRVLILANSGADLIAFET-IPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI 248 (346)
Q Consensus 171 ~~~i~~l~~~gvD~i~~ET-~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGv 248 (346)
.++++.|.++|||+|++-+ -++-..+...++.+++.-.+.++++.. -.+.+++...++ .++++|.+
T Consensus 155 ~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~----------V~T~e~a~~l~~--aGaD~I~v 221 (404)
T PRK06843 155 IERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGN----------IVTKEAALDLIS--VGADCLKV 221 (404)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEe----------cCCHHHHHHHHH--cCCCEEEE
Confidence 3578889999999999874 344455656666677643357776544 235566666554 36777654
No 191
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=73.39 E-value=48 Score=30.75 Aligned_cols=97 Identities=14% Similarity=0.008 Sum_probs=59.6
Q ss_pred HHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEc-CCC--c------ccCCCCHHHHHHHhhcCCCc
Q 019107 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSK-DGI--N------VVSGDSILECASIADSCEQV 243 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~-~~~--~------l~~G~~~~~av~~~~~~~~~ 243 (346)
+++.+.+.|+|-+++-|..- ..-..+.+++++++ + .+++|+..+ ++. . ..++.++.+.++.+.. .++
T Consensus 88 ~~~~~l~~Ga~~vvigT~a~-~~p~~~~~~~~~~g-~-~ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~-~g~ 163 (243)
T TIGR01919 88 SLRAALTGGRARVNGGTAAL-ENPWWAAAVIRYGG-D-IVAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDS-GGC 163 (243)
T ss_pred HHHHHHHcCCCEEEECchhh-CCHHHHHHHHHHcc-c-cEEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHh-CCC
Confidence 34456668999999887421 22233445556655 3 388899876 321 2 2366778888888865 466
Q ss_pred eEEEECCCChh-----hHHHHHHHHhhhcCCcEEE
Q 019107 244 VAVGINCTSPR-----FIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 244 ~avGvNC~~p~-----~~~~~l~~l~~~~~~pl~v 273 (346)
..+-++..+-+ .=..+++++.+.++.|+++
T Consensus 164 ~~ii~tdI~~dGt~~G~d~~l~~~l~~~~~~pvia 198 (243)
T TIGR01919 164 SRVVVTDSKKDGLSGGPNELLLEVVAARTDAIVAA 198 (243)
T ss_pred CEEEEEecCCcccCCCcCHHHHHHHHhhCCCCEEE
Confidence 66666664211 1145677777777778765
No 192
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=73.22 E-value=82 Score=29.55 Aligned_cols=96 Identities=17% Similarity=0.119 Sum_probs=60.9
Q ss_pred HHHHHhCCCCEEEEc-cCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCC-
Q 019107 174 VLILANSGADLIAFE-TIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT- 251 (346)
Q Consensus 174 i~~l~~~gvD~i~~E-T~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~- 251 (346)
++...+.|+|.+-+- ...++++++.+++.+++.| ..|.+++.. ... .+-+.+.+.++.+.+ .+++.|.+-=+
T Consensus 88 l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G--~~v~~~~~~--a~~-~~~~~~~~~~~~~~~-~g~~~i~l~DT~ 161 (266)
T cd07944 88 LEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKG--YEVFFNLMA--ISG-YSDEELLELLELVNE-IKPDVFYIVDSF 161 (266)
T ss_pred HHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCC--CeEEEEEEe--ecC-CCHHHHHHHHHHHHh-CCCCEEEEecCC
Confidence 444567899986433 4567888888899898877 555555432 111 122233344444444 36676655433
Q ss_pred ---ChhhHHHHHHHHhhhcC--CcEEEee
Q 019107 252 ---SPRFIHGLILSVRKVTS--KPVIIYP 275 (346)
Q Consensus 252 ---~p~~~~~~l~~l~~~~~--~pl~vyp 275 (346)
.|+.+..+++.+++..+ .|+.+..
T Consensus 162 G~~~P~~v~~lv~~l~~~~~~~~~i~~H~ 190 (266)
T cd07944 162 GSMYPEDIKRIISLLRSNLDKDIKLGFHA 190 (266)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 49999999999988765 7777654
No 193
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=73.18 E-value=26 Score=33.24 Aligned_cols=64 Identities=14% Similarity=0.112 Sum_probs=42.6
Q ss_pred HHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECC
Q 019107 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC 250 (346)
+....++|+|+|.+++| ++++++.+++..+... ..+.+-.+ .|-++..+.+.+. .++++|.+-+
T Consensus 195 a~~A~~~GaDiI~LDn~-~~e~l~~~v~~~~~~~--~~~~ieAs--------GgIt~~ni~~ya~--~GvD~IsvG~ 258 (273)
T PRK05848 195 AKNAMNAGADIVMCDNM-SVEEIKEVVAYRNANY--PHVLLEAS--------GNITLENINAYAK--SGVDAISSGS 258 (273)
T ss_pred HHHHHHcCCCEEEECCC-CHHHHHHHHHHhhccC--CCeEEEEE--------CCCCHHHHHHHHH--cCCCEEEeCh
Confidence 33455689999999986 8999999888654321 12222221 3567777777664 5788888766
No 194
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=73.01 E-value=1e+02 Score=30.40 Aligned_cols=62 Identities=15% Similarity=0.211 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCCCCEEEEc-cC--CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHh
Q 019107 169 FHRRRVLILANSGADLIAFE-TI--PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIA 237 (346)
Q Consensus 169 ~~~~~i~~l~~~gvD~i~~E-T~--~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~ 237 (346)
++.+.++.+.+.|+|.|.+- |+ ..+.++..+++.+++.- ++-++|.+.++. |..++.++..+
T Consensus 143 ~l~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~---~v~l~~H~HNd~----GlA~ANalaA~ 207 (365)
T TIGR02660 143 FLVELAEVAAEAGADRFRFADTVGILDPFSTYELVRALRQAV---DLPLEMHAHNDL----GMATANTLAAV 207 (365)
T ss_pred HHHHHHHHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHhc---CCeEEEEecCCC----ChHHHHHHHHH
Confidence 34445555667899988654 43 36778888888887642 344688887764 33444444444
No 195
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=72.84 E-value=90 Score=29.81 Aligned_cols=101 Identities=16% Similarity=0.126 Sum_probs=65.3
Q ss_pred HHHHHHHhCCCCEEEEccC-----------------CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHH
Q 019107 172 RRVLILANSGADLIAFETI-----------------PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECA 234 (346)
Q Consensus 172 ~~i~~l~~~gvD~i~~ET~-----------------~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av 234 (346)
+.++.+.++||..|.+|-. -+.+|...-++++++...+.+++|--.. +..+ .+..+.+++
T Consensus 96 r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiART--Da~~-~~~~~~eAi 172 (285)
T TIGR02320 96 RLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARV--ESLI-LGKGMEDAL 172 (285)
T ss_pred HHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEec--cccc-ccCCHHHHH
Confidence 3567788899999999753 3667888888887764213445444432 2222 233588888
Q ss_pred HHhhc--CCCceEEEECC--CChhhHHHHHHHHhhh-cCCcEEEee
Q 019107 235 SIADS--CEQVVAVGINC--TSPRFIHGLILSVRKV-TSKPVIIYP 275 (346)
Q Consensus 235 ~~~~~--~~~~~avGvNC--~~p~~~~~~l~~l~~~-~~~pl~vyp 275 (346)
+.++. ..|++++-+-+ ..++.+..+.+.+... .+.|+++-|
T Consensus 173 ~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~~~ 218 (285)
T TIGR02320 173 KRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVIVP 218 (285)
T ss_pred HHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEEec
Confidence 87643 25788888876 3567777887777542 246887655
No 196
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=72.76 E-value=64 Score=36.89 Aligned_cols=65 Identities=18% Similarity=0.354 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhCCCCEEEEccCC---CHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhh
Q 019107 167 KEFHRRRVLILANSGADLIAFETIP---NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (346)
Q Consensus 167 ~~~~~~~i~~l~~~gvD~i~~ET~~---~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~ 238 (346)
.+||.+.++.+.+.|+|.|.+-.+. .+.++..++.++++.- ++|+ .+.++++ .|..+...+..++
T Consensus 688 l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~-~~pi--~~H~Hdt----~Gla~an~laA~e 755 (1143)
T TIGR01235 688 LKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKT-DLPI--HFHTHDT----SGIAVASMLAAVE 755 (1143)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhc-CCeE--EEEECCC----CCcHHHHHHHHHH
Confidence 4678888889999999999877544 6678888888888753 4665 4555544 2444454444443
No 197
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=72.65 E-value=1.3e+02 Score=31.80 Aligned_cols=64 Identities=16% Similarity=0.087 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhCCCCEEEEccCC---CHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhh
Q 019107 168 EFHRRRVLILANSGADLIAFETIP---NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (346)
Q Consensus 168 ~~~~~~i~~l~~~gvD~i~~ET~~---~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~ 238 (346)
++|.+.++.+.+.|+|.|.+-.+. .+.++...+.++++.- ++| |.|.++++. |..+...+..++
T Consensus 154 e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~-~ip--i~~H~Hnt~----Gla~an~laAie 220 (596)
T PRK14042 154 DNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQAT-GLP--VHLHSHSTS----GLASICHYEAVL 220 (596)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhc-CCE--EEEEeCCCC----CcHHHHHHHHHH
Confidence 466677888888999999876443 6778888888888742 355 456665543 444555554443
No 198
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=72.54 E-value=64 Score=29.92 Aligned_cols=94 Identities=18% Similarity=0.159 Sum_probs=57.0
Q ss_pred HHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCc--------------ccCCCCHHHHHHHhhcCCC
Q 019107 177 LANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGIN--------------VVSGDSILECASIADSCEQ 242 (346)
Q Consensus 177 l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~--------------l~~G~~~~~av~~~~~~~~ 242 (346)
+...|+|.+++-|. .+.+...+.++.+.++ +-.+++|+.+.+... ...+.++.+.+..+.. .+
T Consensus 92 ~~~~Ga~~vivgt~-~~~~p~~~~~~~~~~~-~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~-~G 168 (254)
T TIGR00735 92 LLRAGADKVSINTA-AVKNPELIYELADRFG-SQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEK-LG 168 (254)
T ss_pred HHHcCCCEEEEChh-HhhChHHHHHHHHHcC-CCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHH-cC
Confidence 44478999988753 2333344445555554 356888998754311 1235566777777765 47
Q ss_pred ceEEEECCCCh-----hhHHHHHHHHhhhcCCcEEE
Q 019107 243 VVAVGINCTSP-----RFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 243 ~~avGvNC~~p-----~~~~~~l~~l~~~~~~pl~v 273 (346)
++.|-+..... ..-..+++++.+..+.|+++
T Consensus 169 ~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia 204 (254)
T TIGR00735 169 AGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIA 204 (254)
T ss_pred CCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEE
Confidence 78877766432 12246677777777788665
No 199
>PLN02591 tryptophan synthase
Probab=72.48 E-value=85 Score=29.37 Aligned_cols=158 Identities=14% Similarity=0.152 Sum_probs=86.7
Q ss_pred HHHHHHHHHhCCCCEEEEccCC-----------------------CHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccC
Q 019107 170 HRRRVLILANSGADLIAFETIP-----------------------NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVS 226 (346)
Q Consensus 170 ~~~~i~~l~~~gvD~i~~ET~~-----------------------~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~ 226 (346)
..+.++.|.++|||+|=+- || +++.....++.+|+. .+.|++ -++..+.- ...
T Consensus 18 ~~~~~~~l~~~Gad~iElG-iPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~-~~~p~i-lm~Y~N~i-~~~ 93 (250)
T PLN02591 18 TAEALRLLDACGADVIELG-VPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQ-LSCPIV-LFTYYNPI-LKR 93 (250)
T ss_pred HHHHHHHHHHCCCCEEEEC-CCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCEE-EEecccHH-HHh
Confidence 3446778889999999432 23 333444444445543 357865 44443221 122
Q ss_pred CCCHHHHHHHhhcCCCceEEEECCCChhhHHHHHHHHhhhcCCcE-EEeeCCCCc----ccccccccc--------cc-C
Q 019107 227 GDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKPV-IIYPNSGET----YNAELKKWV--------ES-T 292 (346)
Q Consensus 227 G~~~~~av~~~~~~~~~~avGvNC~~p~~~~~~l~~l~~~~~~pl-~vypN~g~~----~~~~~~~~~--------~~-~ 292 (346)
| ++..++.+.+ .+++++-+.=-.++....+.+..+++.=.++ ++-|+.... .......|+ +. +
T Consensus 94 G--~~~F~~~~~~-aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~ 170 (250)
T PLN02591 94 G--IDKFMATIKE-AGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGAR 170 (250)
T ss_pred H--HHHHHHHHHH-cCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCC
Confidence 3 4677777765 5889999887777888888777766532233 344776420 000001111 11 1
Q ss_pred CCChHHHHHHHHHHHH-cCCeEEeecCCCchHHHHHHHHH-HcC
Q 019107 293 GVRDEDFVSYIGKWRD-AGASLFGGCCRTTPNTIKAISRV-LSN 334 (346)
Q Consensus 293 ~~~~~~~~~~~~~~~~-~G~~ivGGCCGt~P~hI~al~~~-~~~ 334 (346)
.-.+.++.+++++.++ ....++=|=-=.+|+|++++.+. .++
T Consensus 171 ~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADG 214 (250)
T PLN02591 171 ASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADG 214 (250)
T ss_pred cCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCE
Confidence 1124455555555554 24555444444679999998776 443
No 200
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=72.41 E-value=71 Score=30.53 Aligned_cols=111 Identities=21% Similarity=0.239 Sum_probs=65.2
Q ss_pred CCCHHH---HHHHHHHHHHHHHhCCCCEEEEccC----------C-----------C----HHHHHHHHHHHHHh-CCCC
Q 019107 160 AVSLET---LKEFHRRRVLILANSGADLIAFETI----------P-----------N----KLEAKAYAELLEEE-GITI 210 (346)
Q Consensus 160 ~~~~~e---~~~~~~~~i~~l~~~gvD~i~~ET~----------~-----------~----~~E~~a~~~a~~~~-~~~~ 210 (346)
.+|.+| +.+.|.+.++.+.++|.|.|=+-.- | + ...+..+++++++. +.+.
T Consensus 130 ~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~ 209 (327)
T cd02803 130 EMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDF 209 (327)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCc
Confidence 355555 5556777788888899998854321 0 0 12234556666663 4456
Q ss_pred cEEEEEEEcCCCcccCCCCHHHHHHHh---hcCCCceEEEECCCC---h-----------hhHHHHHHHHhhhcCCcEEE
Q 019107 211 PAWFSFNSKDGINVVSGDSILECASIA---DSCEQVVAVGINCTS---P-----------RFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 211 pv~is~~~~~~~~l~~G~~~~~av~~~---~~~~~~~avGvNC~~---p-----------~~~~~~l~~l~~~~~~pl~v 273 (346)
|+.+-++..+ ...+|.++.++++.+ .+ .+++.|-+.... + ..-...++.+++..+.|+++
T Consensus 210 ~i~vris~~~--~~~~g~~~~e~~~la~~l~~-~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~ 286 (327)
T cd02803 210 PVGVRLSADD--FVPGGLTLEEAIEIAKALEE-AGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIA 286 (327)
T ss_pred eEEEEechhc--cCCCCCCHHHHHHHHHHHHH-cCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEE
Confidence 7777776532 223566777665544 33 467887665532 1 22235667777777788765
No 201
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=72.33 E-value=76 Score=30.73 Aligned_cols=162 Identities=19% Similarity=0.163 Sum_probs=87.4
Q ss_pred CCCCCCCccchhccC-CChHHHHHHHHHHHHhhcceeeccccccCH----Hh----------HHhCCCCHHHHHHHHHHH
Q 019107 37 GADLNDPLWSAKCLV-SSPHLVRKVHLDYLDAGANIIITASYQATI----QG----------FEAKGFSTEEAEALLRRS 101 (346)
Q Consensus 37 G~~~~~~lwsa~~ll-~~Pe~V~~iH~~yl~AGA~iI~TnTy~as~----~~----------l~~~g~~~~~~~~l~~~a 101 (346)
|+.+..|+|-+.-.. ++.+.+..+.... +|+=++-|-|....+ .+ +.+.|+...-++.
T Consensus 8 Gl~f~NPl~lAaG~~~~~~~~~~~~~~~g--~G~i~~ktvt~~pq~Gnp~PR~~~l~~~~~~iN~mG~~N~G~~~----- 80 (310)
T COG0167 8 GLKFPNPLGLAAGFDGKNGEELDALAALG--FGAIVTKTVTPEPQEGNPKPRLFRLPEDEGLINRMGFNNPGADA----- 80 (310)
T ss_pred ceecCCCCeEcccCCccCHHHHHHHHhcC--CceEEecCCCCcCCCCCCCCeEEEecCcccHHHhcCCCchhHHH-----
Confidence 677778998755555 7888888887776 888888888875211 11 1222333211111
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 019107 102 VEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSG 181 (346)
Q Consensus 102 v~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~g 181 (346)
+..+...... + ..-..+-|..+++.. + ++-.+.|...++...+
T Consensus 81 --~~~~l~~~~~-~-------------~~~~~~~i~~~~~~~------------------~-~~~~~d~~~~~~~~~~-- 123 (310)
T COG0167 81 --FLEELKLAKY-E-------------GKPIGVNIGKNKGGP------------------S-EEAWADYARLLEEAGD-- 123 (310)
T ss_pred --HHHHHHhhhh-c-------------cCCcCcceEEecCCC------------------c-HHHHHHHHHHHHhcCC--
Confidence 1111111100 0 000122344433221 1 2233334444444432
Q ss_pred CCEEEEc-cCC----------CHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceE-EEEC
Q 019107 182 ADLIAFE-TIP----------NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVA-VGIN 249 (346)
Q Consensus 182 vD~i~~E-T~~----------~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~a-vGvN 249 (346)
+|+|-+. .-| +.+.+..+++++++.. ++||++-++. +-+.+.+++..+.. .++++ +.+|
T Consensus 124 ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~-~~Pv~vKl~P-------~~~di~~iA~~~~~-~g~Dgl~~~N 194 (310)
T COG0167 124 ADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAAT-KVPVFVKLAP-------NITDIDEIAKAAEE-AGADGLIAIN 194 (310)
T ss_pred CCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcc-cCceEEEeCC-------CHHHHHHHHHHHHH-cCCcEEEEEe
Confidence 8888654 112 4556677777888865 6999999975 34556777777755 36665 5677
Q ss_pred CC
Q 019107 250 CT 251 (346)
Q Consensus 250 C~ 251 (346)
-+
T Consensus 195 T~ 196 (310)
T COG0167 195 TT 196 (310)
T ss_pred ec
Confidence 65
No 202
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=72.09 E-value=87 Score=29.34 Aligned_cols=72 Identities=11% Similarity=0.072 Sum_probs=42.4
Q ss_pred HHHHHHHHhCCCCEEEEcc-----------CCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhc
Q 019107 171 RRRVLILANSGADLIAFET-----------IPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS 239 (346)
Q Consensus 171 ~~~i~~l~~~gvD~i~~ET-----------~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~ 239 (346)
.+.++.+.+.|+|.|-+-. ..+.+.+..+++++++.- +.|+++-+.... +-+.+.+.++.+.+
T Consensus 114 ~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~-----~~~~~~~~a~~l~~ 187 (289)
T cd02810 114 VELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYF-----DLEDIVELAKAAER 187 (289)
T ss_pred HHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCC-----CHHHHHHHHHHHHH
Confidence 3456667777899886531 124556677788787753 588888775321 11123445555544
Q ss_pred CCCceEEEEC
Q 019107 240 CEQVVAVGIN 249 (346)
Q Consensus 240 ~~~~~avGvN 249 (346)
.++++|-+-
T Consensus 188 -~Gad~i~~~ 196 (289)
T cd02810 188 -AGADGLTAI 196 (289)
T ss_pred -cCCCEEEEE
Confidence 467776653
No 203
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=71.84 E-value=1.1e+02 Score=31.08 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=18.1
Q ss_pred ChHHHHHHHHHHHHhhcceeeccccccC
Q 019107 53 SPHLVRKVHLDYLDAGANIIITASYQAT 80 (346)
Q Consensus 53 ~Pe~V~~iH~~yl~AGA~iI~TnTy~as 80 (346)
.++..+++- .-+++|+|+|.-++-+.+
T Consensus 222 ~~~~~~r~~-~L~~aG~d~I~vd~a~g~ 248 (450)
T TIGR01302 222 REFDKERAE-ALVKAGVDVIVIDSSHGH 248 (450)
T ss_pred chhHHHHHH-HHHHhCCCEEEEECCCCc
Confidence 344444443 678899999998776643
No 204
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=71.80 E-value=98 Score=32.04 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhCCCCEEEEccCC---CHHHHHHHHHHHHHhC-CCCcEEEEEEEcCCCcccCCCCHHHHHHHhh
Q 019107 168 EFHRRRVLILANSGADLIAFETIP---NKLEAKAYAELLEEEG-ITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (346)
Q Consensus 168 ~~~~~~i~~l~~~gvD~i~~ET~~---~~~E~~a~~~a~~~~~-~~~pv~is~~~~~~~~l~~G~~~~~av~~~~ 238 (346)
++|.+.++.+.+.|+|.|.+-.+. .+.++..++.++++.- .++| |.+.+.++. |..+...+..++
T Consensus 155 e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ip--I~~H~Hnt~----GlA~An~laAie 223 (499)
T PRK12330 155 EGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTR--INLHCHSTT----GVTLVSLMKAIE 223 (499)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCe--EEEEeCCCC----CcHHHHHHHHHH
Confidence 467777888889999999876433 6778888888888742 1344 566666543 444444444443
No 205
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=71.77 E-value=92 Score=29.48 Aligned_cols=158 Identities=14% Similarity=0.194 Sum_probs=92.9
Q ss_pred HHHHHHHHhCCCCEEEEccCC-----------------------CHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCC
Q 019107 171 RRRVLILANSGADLIAFETIP-----------------------NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSG 227 (346)
Q Consensus 171 ~~~i~~l~~~gvD~i~~ET~~-----------------------~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G 227 (346)
.+.++.|.++|+|+|=+- || ++.....+++.+++.+.+.|+++-.....- ...|
T Consensus 34 ~e~i~~L~~~GaD~iELG-vPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi--~~~G 110 (265)
T COG0159 34 LEIIKTLVEAGADILELG-VPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPI--FNYG 110 (265)
T ss_pred HHHHHHHHhCCCCEEEec-CCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHH--HHhh
Confidence 346778899999999433 33 445555566667766667898865544321 1234
Q ss_pred CCHHHHHHHhhcCCCceEEEECCCChhhHHHHHHHHhhhc-CCcEEEeeCCCC-------------cccccccccccc-C
Q 019107 228 DSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVT-SKPVIIYPNSGE-------------TYNAELKKWVES-T 292 (346)
Q Consensus 228 ~~~~~av~~~~~~~~~~avGvNC~~p~~~~~~l~~l~~~~-~~pl~vypN~g~-------------~~~~~~~~~~~~-~ 292 (346)
++..++.+.+ .+++++.+-=..++.-..+.+..+++. +.-.++-||+.. +|-..... .++ +
T Consensus 111 --ie~F~~~~~~-~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~G-vTG~~ 186 (265)
T COG0159 111 --IEKFLRRAKE-AGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMG-VTGAR 186 (265)
T ss_pred --HHHHHHHHHH-cCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeccc-ccCCC
Confidence 3566777755 589999888777777777777766553 222456777641 11111000 011 0
Q ss_pred CCChHHHHHHHHHHHH-cCCeEEeecCCCchHHHHHHHHHHcCC
Q 019107 293 GVRDEDFVSYIGKWRD-AGASLFGGCCRTTPNTIKAISRVLSNK 335 (346)
Q Consensus 293 ~~~~~~~~~~~~~~~~-~G~~ivGGCCGt~P~hI~al~~~~~~~ 335 (346)
........+.+++.++ ..+.++=|=.=.+|+|.+++.+..++.
T Consensus 187 ~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~ADGV 230 (265)
T COG0159 187 NPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEAADGV 230 (265)
T ss_pred cccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHhCCeE
Confidence 0111224444444443 356666666667999999998875543
No 206
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=71.45 E-value=83 Score=28.80 Aligned_cols=99 Identities=15% Similarity=0.168 Sum_probs=61.4
Q ss_pred HHHHHHhCCCCEEEEccCCC---------------HHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHh
Q 019107 173 RVLILANSGADLIAFETIPN---------------KLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIA 237 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~~~---------------~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~ 237 (346)
.++.+.+.|+|.+.+=.-.+ .+++..+++.+++.+ +++.+++..-... ..+-+.+.+.++.+
T Consensus 79 ~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G--~~v~~~~~~~~~~-~~~~~~l~~~~~~~ 155 (265)
T cd03174 79 GIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAG--LEVEGSLEDAFGC-KTDPEYVLEVAKAL 155 (265)
T ss_pred hHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC--CeEEEEEEeecCC-CCCHHHHHHHHHHH
Confidence 45566778888886554333 677888888888876 7777777421110 01112234455544
Q ss_pred hcCCCceEEEECC----CChhhHHHHHHHHhhhcC-CcEEEee
Q 019107 238 DSCEQVVAVGINC----TSPRFIHGLILSVRKVTS-KPVIIYP 275 (346)
Q Consensus 238 ~~~~~~~avGvNC----~~p~~~~~~l~~l~~~~~-~pl~vyp 275 (346)
.+ .+++.|.+.= ..|+.+..+++.+++..+ .|+.+..
T Consensus 156 ~~-~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~ 197 (265)
T cd03174 156 EE-AGADEISLKDTVGLATPEEVAELVKALREALPDVPLGLHT 197 (265)
T ss_pred HH-cCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 44 3566555432 358999999999988765 6776654
No 207
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=71.27 E-value=86 Score=28.92 Aligned_cols=90 Identities=17% Similarity=0.221 Sum_probs=56.7
Q ss_pred HHHHHHhCCCCEEEEccCC--CHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECC
Q 019107 173 RVLILANSGADLIAFETIP--NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~~--~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC 250 (346)
.++.+.++|+|.+++=..| ..+|....++.+++.| +.+.+.++ ..++++..-..++...++..+++|=
T Consensus 93 ~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~G--l~~~~~v~--------p~T~~e~l~~~~~~~~~~l~msv~~ 162 (244)
T PRK13125 93 FLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKG--LKPVFFTS--------PKFPDLLIHRLSKLSPLFIYYGLRP 162 (244)
T ss_pred HHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcC--CCEEEEEC--------CCCCHHHHHHHHHhCCCEEEEEeCC
Confidence 3556778999999863322 1468888889999977 77776664 3445555544554445566668876
Q ss_pred C--C--hhhHHHHHHHHhhhc-CCcEE
Q 019107 251 T--S--PRFIHGLILSVRKVT-SKPVI 272 (346)
Q Consensus 251 ~--~--p~~~~~~l~~l~~~~-~~pl~ 272 (346)
. + +..+...++++++.. +.|+.
T Consensus 163 ~~g~~~~~~~~~~i~~lr~~~~~~~i~ 189 (244)
T PRK13125 163 ATGVPLPVSVERNIKRVRNLVGNKYLV 189 (244)
T ss_pred CCCCCchHHHHHHHHHHHHhcCCCCEE
Confidence 4 2 345555666777665 35643
No 208
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=71.18 E-value=1.1e+02 Score=30.26 Aligned_cols=143 Identities=16% Similarity=0.147 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEccC-----------CC-----------HHHHHHHHHHHHHhCCCCcEEEEEEEcCC
Q 019107 164 ETLKEFHRRRVLILANSGADLIAFETI-----------PN-----------KLEAKAYAELLEEEGITIPAWFSFNSKDG 221 (346)
Q Consensus 164 ~e~~~~~~~~i~~l~~~gvD~i~~ET~-----------~~-----------~~E~~a~~~a~~~~~~~~pv~is~~~~~~ 221 (346)
++..+||+++++ .|+-+|+.|-. ++ +...+.+++++++.+ .++++.+.-...
T Consensus 35 ~~~~~yy~~rA~----gG~GlIi~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~k~l~davh~~G--~~i~~QL~H~~G 108 (382)
T cd02931 35 QRGIDYYVERAK----GGTGLIITGVTMVDNEIEQFPMPSLPCPTYNPTAFIRTAKEMTERVHAYG--TKIFLQLTAGFG 108 (382)
T ss_pred HHHHHHHHHHhc----CCCCEEEEEEEEeCCcccccCCCCccccccCCHHHhHHHHHHHHHHHHcC--CEEEEEccCcCC
Confidence 678888988765 67777776621 11 223566677777766 677888741100
Q ss_pred C-------------------------cccCCCC---HHH-------HHHHhhcCCCceEEEECCCC--------------
Q 019107 222 I-------------------------NVVSGDS---ILE-------CASIADSCEQVVAVGINCTS-------------- 252 (346)
Q Consensus 222 ~-------------------------~l~~G~~---~~~-------av~~~~~~~~~~avGvNC~~-------------- 252 (346)
. ..+.-.+ +.+ ++..+.+ .+.++|-|+|.+
T Consensus 109 r~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~~-AGfDgVEih~ah~GyLl~qFLSp~~N 187 (382)
T cd02931 109 RVCIPGFLGEDKPVAPSPIPNRWLPEITCRELTTEEVETFVGKFGESAVIAKE-AGFDGVEIHAVHEGYLLDQFTISLFN 187 (382)
T ss_pred CccCccccCCCCccCCCCCCCCcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEeccccChHHHHhcCCccC
Confidence 0 0001112 222 2222223 589999999964
Q ss_pred -------------hhhHHHHHHHHhhhc--CCcEEEeeCCCCccccc------cccccccCCCChHHHHHHHHHHHHcCC
Q 019107 253 -------------PRFIHGLILSVRKVT--SKPVIIYPNSGETYNAE------LKKWVESTGVRDEDFVSYIGKWRDAGA 311 (346)
Q Consensus 253 -------------p~~~~~~l~~l~~~~--~~pl~vypN~g~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~G~ 311 (346)
+..+..+++.+++.. +.|+++.-|........ ..++. ..+.++++..+.++.+.+.|+
T Consensus 188 ~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~-~~g~~~e~~~~~~~~l~~~gv 266 (382)
T cd02931 188 KRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQ-EKGRDLEEGLKAAKILEEAGY 266 (382)
T ss_pred CCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccc-cCCCCHHHHHHHHHHHHHhCC
Confidence 133456666777665 45788876542110000 01121 124567888888888888887
Q ss_pred eEE
Q 019107 312 SLF 314 (346)
Q Consensus 312 ~iv 314 (346)
.+|
T Consensus 267 D~l 269 (382)
T cd02931 267 DAL 269 (382)
T ss_pred CEE
Confidence 776
No 209
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=70.74 E-value=1e+02 Score=29.63 Aligned_cols=82 Identities=17% Similarity=0.089 Sum_probs=42.1
Q ss_pred HHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCC--CCHHHHHHHhhcCCCceEEEECCC
Q 019107 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSG--DSILECASIADSCEQVVAVGINCT 251 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G--~~~~~av~~~~~~~~~~avGvNC~ 251 (346)
+..+.+.|+|.+-++...++.|++ +..+ +. +.+.=.+++...+..| +.+.+.++.+-. .+-..++..|.
T Consensus 248 ~~~l~~~g~d~ls~d~~~~l~~~~------~~~g-~~-~~i~Gnidp~~ll~~gt~eeI~~~v~~~l~-~~~~Il~~gcg 318 (340)
T TIGR01463 248 LRDIANNGCFGFSVDMKPGMDHAK------RVIG-GQ-ASLVGNLSPFSTLMNGTPEKVKKLAKEVLY-NGGDIVMPGCD 318 (340)
T ss_pred HHHHHHhCCCEEeecCCCCHHHHH------HHcC-Cc-eEEEecCChHHHhcCCCHHHHHHHHHHHHH-cCCeEECCCCC
Confidence 445667899999999888887753 3333 12 2222223222233344 223333333322 23355667775
Q ss_pred -C----hhhHHHHHHHHh
Q 019107 252 -S----PRFIHGLILSVR 264 (346)
Q Consensus 252 -~----p~~~~~~l~~l~ 264 (346)
. ++.+..+++..+
T Consensus 319 i~~~tp~eni~a~v~a~~ 336 (340)
T TIGR01463 319 IDWMTPLENLKAMIEACK 336 (340)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 2 355655555544
No 210
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=70.70 E-value=41 Score=33.58 Aligned_cols=60 Identities=15% Similarity=0.045 Sum_probs=34.8
Q ss_pred CCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCC----------------hhhHHHHHHHHhhhcCCcEE
Q 019107 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTS----------------PRFIHGLILSVRKVTSKPVI 272 (346)
Q Consensus 209 ~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~----------------p~~~~~~l~~l~~~~~~pl~ 272 (346)
..|+++|+.-. . +=+...+.++.+++ .+++++=+|-+. |+.+..+++.+++..++|++
T Consensus 113 ~~pvIaSi~~~---~--s~~~~~~~a~~~e~-~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~ 186 (385)
T PLN02495 113 DRILIASIMEE---Y--NKDAWEEIIERVEE-TGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVW 186 (385)
T ss_pred CCcEEEEccCC---C--CHHHHHHHHHHHHh-cCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceE
Confidence 46888887310 0 01223445555544 356777666542 34566666777777789988
Q ss_pred Ee
Q 019107 273 IY 274 (346)
Q Consensus 273 vy 274 (346)
+.
T Consensus 187 vK 188 (385)
T PLN02495 187 AK 188 (385)
T ss_pred EE
Confidence 76
No 211
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=70.56 E-value=1.2e+02 Score=30.53 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhCCCCEEEEccCC---CHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCc
Q 019107 167 KEFHRRRVLILANSGADLIAFETIP---NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQV 243 (346)
Q Consensus 167 ~~~~~~~i~~l~~~gvD~i~~ET~~---~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~ 243 (346)
.++|.+.++.|.+.|||-|.|-.|. ++.++-.++.++++.- ++|+-+...+. +|-+...-+..++ .|+
T Consensus 155 ~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~-~~pv~lHtH~T------sG~a~m~ylkAvE--AGv 225 (472)
T COG5016 155 LEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKEL-PVPVELHTHAT------SGMAEMTYLKAVE--AGV 225 (472)
T ss_pred HHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhc-CCeeEEecccc------cchHHHHHHHHHH--hCc
Confidence 4578888999999999999988765 7778888898888743 36655444332 4544444444443 244
Q ss_pred eEEEECC
Q 019107 244 VAVGINC 250 (346)
Q Consensus 244 ~avGvNC 250 (346)
+.|-..+
T Consensus 226 D~iDTAi 232 (472)
T COG5016 226 DGIDTAI 232 (472)
T ss_pred chhhhhh
Confidence 4444443
No 212
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=70.51 E-value=86 Score=30.96 Aligned_cols=159 Identities=16% Similarity=0.181 Sum_probs=90.4
Q ss_pred cCCChHHHHHHHHHHHHhhcceeeccccc--cCHHhHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCC
Q 019107 50 LVSSPHLVRKVHLDYLDAGANIIITASYQ--ATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSG 127 (346)
Q Consensus 50 ll~~Pe~V~~iH~~yl~AGA~iI~TnTy~--as~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~ 127 (346)
-+++++.+.++=+.--++|+.++.-..|. +|++.+ .|+. ..+.++-+++++++
T Consensus 110 sIEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf--~G~g--------~~gl~~L~~~~~e~--------------- 164 (352)
T PRK13396 110 SVENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAF--QGHG--------ESALELLAAAREAT--------------- 164 (352)
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCccc--CCch--------HHHHHHHHHHHHHc---------------
Confidence 37889999999888999999999988885 444333 2333 33456666666542
Q ss_pred CCCCCCcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhC
Q 019107 128 RISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEG 207 (346)
Q Consensus 128 ~~~~~~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~ 207 (346)
+-+ +.-++ .+. ++++.+.+. +|++-+-...... ...++++.+++
T Consensus 165 ---Gl~--~~tev--------------------~d~--------~~v~~~~~~-~d~lqIga~~~~n--~~LL~~va~t~ 208 (352)
T PRK13396 165 ---GLG--IITEV--------------------MDA--------ADLEKIAEV-ADVIQVGARNMQN--FSLLKKVGAQD 208 (352)
T ss_pred ---CCc--EEEee--------------------CCH--------HHHHHHHhh-CCeEEECcccccC--HHHHHHHHccC
Confidence 212 22211 121 234445444 7888766543222 23455555554
Q ss_pred CCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECC-----C-C-h--hhHHHHHHHHhhhcCCcEEEeeC
Q 019107 208 ITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC-----T-S-P--RFIHGLILSVRKVTSKPVIIYPN 276 (346)
Q Consensus 208 ~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC-----~-~-p--~~~~~~l~~l~~~~~~pl~vypN 276 (346)
+||+++= +.-.+-+.+..+++.+........+..-| . . | ..=...+..+++.+..|+++-|.
T Consensus 209 --kPVllk~-----G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lPVi~Dps 279 (352)
T PRK13396 209 --KPVLLKR-----GMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLTHLPIMIDPS 279 (352)
T ss_pred --CeEEEeC-----CCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhhCCCEEECCc
Confidence 8888664 21113334556677665433346777888 3 1 2 12244556666666788877775
No 213
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=70.31 E-value=91 Score=28.80 Aligned_cols=223 Identities=20% Similarity=0.151 Sum_probs=119.5
Q ss_pred CCChHHHHHHHHHHHHhhcceeeccccccCHHhHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCC
Q 019107 51 VSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRIS 130 (346)
Q Consensus 51 l~~Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~ 130 (346)
-.+++...++-+.+++.|.+.+-|.....+ | ..++++..+++-.+ ..
T Consensus 13 ~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~-------g----~sE~~lg~~l~~~~----------------------~~ 59 (283)
T PF00248_consen 13 RVSEEEAEAILRRALEAGINFFDTADSYGN-------G----RSERILGRALRKSR----------------------VP 59 (283)
T ss_dssp TSTHHHHHHHHHHHHHTT--EEEECGGGGG-------G----THHHHHHHHHHHTS----------------------ST
T ss_pred CCCHHHHHHHHHHHHHcCCCeecccccccc-------c----cccccccccccccc----------------------cc
Confidence 456788888889999999999999876411 1 13344444443200 12
Q ss_pred CCCcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCC---C-HHHHHHHHHHHHHh
Q 019107 131 SRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIP---N-KLEAKAYAELLEEE 206 (346)
Q Consensus 131 ~~~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~---~-~~E~~a~~~a~~~~ 206 (346)
..+++|+.=+.+-+. .....+.+.+.+...+.++.|.-..+|++++--.. . ..|+...++.+++.
T Consensus 60 r~~~~i~tK~~~~~~-----------~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~ 128 (283)
T PF00248_consen 60 RDDIFISTKVYGDGK-----------PEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKE 128 (283)
T ss_dssp GGGSEEEEEEESSSS-----------TGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHT
T ss_pred ccccccccccccccc-----------ccccccccccccccccccccccccchhccccccccccccccchhhhhhhhcccc
Confidence 236788777711111 11125788899988888888876789999875433 3 56677777778887
Q ss_pred CCCCcEEEEEEEcCCCcccCCCCHHHHHHHh--hcCCCceEEEECCCC--hhhHHHHHHHHhhhcCCcEEEee-CCCCcc
Q 019107 207 GITIPAWFSFNSKDGINVVSGDSILECASIA--DSCEQVVAVGINCTS--PRFIHGLILSVRKVTSKPVIIYP-NSGETY 281 (346)
Q Consensus 207 ~~~~pv~is~~~~~~~~l~~G~~~~~av~~~--~~~~~~~avGvNC~~--p~~~~~~l~~l~~~~~~pl~vyp-N~g~~~ 281 (346)
| +==-+.++ +.+. +.++.+ .....++.+-++..- ......+++...+. ..+++++- -++...
T Consensus 129 G--~ir~iGvs---------~~~~-~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~-gi~v~a~~~l~~G~l 195 (283)
T PF00248_consen 129 G--KIRHIGVS---------NFSP-EQLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREH-GIGVIAYSPLAGGLL 195 (283)
T ss_dssp T--SEEEEEEE---------S--H-HHHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHT-T-EEEEESTTGGGCG
T ss_pred c--cccccccc---------cccc-ccccccccccccccccccccccccccccccccccccccc-ccccccccccccCcc
Confidence 7 32223443 3332 333333 222346777777763 34555666655543 56666553 222111
Q ss_pred c-ccc-ccccccC-------C----C------ChHHHHHHHHHHHH---cCCeEEeecCCCchHHHHHHHHHH
Q 019107 282 N-AEL-KKWVEST-------G----V------RDEDFVSYIGKWRD---AGASLFGGCCRTTPNTIKAISRVL 332 (346)
Q Consensus 282 ~-~~~-~~~~~~~-------~----~------~~~~~~~~~~~~~~---~G~~ivGGCCGt~P~hI~al~~~~ 332 (346)
. ... ..+.... . + ..-..++.+-+|.- .+..++-|| ++|+|++...+.+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~--~~~~~l~en~~a~ 266 (283)
T PF00248_consen 196 TGKYKSPPPPPSRASLRDAQELADALRELAEEHGVSPAQLALRWVLSHPGVASVIVGA--SSPEHLEENLAAL 266 (283)
T ss_dssp GTTTTTTTTSTTTSGSSTHGGGHHHHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB---SSHHHHHHHHGGS
T ss_pred ccccccCCCcccccccchhhhhhhhhhhhhhhcccccchhhhhhhhhccccccccCCC--CCHHHHHHHHHHh
Confidence 0 000 0000000 0 0 00023555667763 466666665 8999998876665
No 214
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=70.17 E-value=70 Score=30.13 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEccCCC
Q 019107 161 VSLETLKEFHRRRVLILANSGADLIAFETIPN 192 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~ 192 (346)
.+.+++.+.-.+=++.|.++|+|.+++|.+.+
T Consensus 21 ~~~~~i~e~A~~ea~~l~~~GvD~viveN~~d 52 (257)
T TIGR00259 21 DNLNAVIDKAWKDAMALEEGGVDAVMFENFFD 52 (257)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 37899999888889999999999999998876
No 215
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=70.01 E-value=57 Score=30.41 Aligned_cols=95 Identities=21% Similarity=0.231 Sum_probs=64.7
Q ss_pred HHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcc------cCCCCHHHHHHHhhcCCCceEE
Q 019107 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINV------VSGDSILECASIADSCEQVVAV 246 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l------~~G~~~~~av~~~~~~~~~~av 246 (346)
.++.+.+.|++-+++-|+. +..-..+.++++++| -.+++++.++.+.-. .++-++.+.++.++. .++..+
T Consensus 89 ~v~~ll~~G~~rViiGt~a-v~~p~~v~~~~~~~g--~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~-~g~~~i 164 (241)
T COG0106 89 DVEALLDAGVARVIIGTAA-VKNPDLVKELCEEYG--DRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEE-VGLAHI 164 (241)
T ss_pred HHHHHHHCCCCEEEEecce-ecCHHHHHHHHHHcC--CcEEEEEEccCCccccccccccccCCHHHHHHHHHh-cCCCeE
Confidence 4566778999999999987 666677788888887 778889999875432 244578888887765 344444
Q ss_pred EEC-------CCChhhHHHHHHHHhhhcCCcEEE
Q 019107 247 GIN-------CTSPRFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 247 GvN-------C~~p~~~~~~l~~l~~~~~~pl~v 273 (346)
-+- |.+|. ..+++++.++++.|+++
T Consensus 165 i~TdI~~DGtl~G~n--~~l~~~l~~~~~ipvia 196 (241)
T COG0106 165 LYTDISRDGTLSGPN--VDLVKELAEAVDIPVIA 196 (241)
T ss_pred EEEecccccccCCCC--HHHHHHHHHHhCcCEEE
Confidence 332 22232 34556666667888755
No 216
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=70.01 E-value=94 Score=28.86 Aligned_cols=124 Identities=19% Similarity=0.200 Sum_probs=69.1
Q ss_pred HHHHHHhCCCCEEEEccC-------CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccC--CCCHHHHHHHhhcCCCc
Q 019107 173 RVLILANSGADLIAFETI-------PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVS--GDSILECASIADSCEQV 243 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~-------~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~--G~~~~~av~~~~~~~~~ 243 (346)
.++.+.+.|+|.+-+.-- ..+.+++.+.+++++.+ .|+++-+.. +..++.. -+.+..+++.... .++
T Consensus 95 ~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g--~~liv~~~~-~Gvh~~~~~~~~~~~~~~~a~~-~GA 170 (258)
T TIGR01949 95 TVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWG--VPLLAMMYP-RGPHIDDRDPELVAHAARLGAE-LGA 170 (258)
T ss_pred eHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcC--CCEEEEEec-cCcccccccHHHHHHHHHHHHH-HCC
Confidence 456677789987755322 12335566666666655 898884432 2222211 1123333333333 578
Q ss_pred eEEEECCCChhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeEEeecCC
Q 019107 244 VAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCR 319 (346)
Q Consensus 244 ~avGvNC~~p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivGGCCG 319 (346)
+.|++.-.. -...++++.+..+.|+.+- .|. - ..+.+++.+.+.+.++.|+. |=|+|
T Consensus 171 Dyikt~~~~---~~~~l~~~~~~~~iPVva~--GGi-~-----------~~~~~~~~~~i~~~~~aGa~--Gia~g 227 (258)
T TIGR01949 171 DIVKTPYTG---DIDSFRDVVKGCPAPVVVA--GGP-K-----------TNSDREFLQMIKDAMEAGAA--GVAVG 227 (258)
T ss_pred CEEeccCCC---CHHHHHHHHHhCCCcEEEe--cCC-C-----------CCCHHHHHHHHHHHHHcCCc--EEehh
Confidence 988876331 1344555554456787552 331 0 01357788888889999997 65666
No 217
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=69.88 E-value=13 Score=34.02 Aligned_cols=95 Identities=22% Similarity=0.234 Sum_probs=61.0
Q ss_pred HHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCC-Ccc------cCCCCHHHHHHHhhcCCCceEE
Q 019107 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDG-INV------VSGDSILECASIADSCEQVVAV 246 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~-~~l------~~G~~~~~av~~~~~~~~~~av 246 (346)
++.+.+.|+|-+++-|. .+.....+-+++++++ +-.+++|+.++.+ .-. .++.++.+.+..+.+ .++..+
T Consensus 88 ~~~ll~~Ga~~Vvigt~-~~~~~~~l~~~~~~~g-~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~-~g~~~i 164 (229)
T PF00977_consen 88 AERLLDAGADRVVIGTE-ALEDPELLEELAERYG-SQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEE-LGAGEI 164 (229)
T ss_dssp HHHHHHTT-SEEEESHH-HHHCCHHHHHHHHHHG-GGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHH-TT-SEE
T ss_pred HHHHHHhCCCEEEeChH-HhhchhHHHHHHHHcC-cccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHh-cCCcEE
Confidence 44567789999988764 2233334555666666 4579999998775 222 234568899988876 467778
Q ss_pred EECCCC-------hhhHHHHHHHHhhhcCCcEEE
Q 019107 247 GINCTS-------PRFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 247 GvNC~~-------p~~~~~~l~~l~~~~~~pl~v 273 (346)
-+++.. |+ ..+++.+.+..+.|+++
T Consensus 165 i~tdi~~dGt~~G~d--~~~~~~l~~~~~~~via 196 (229)
T PF00977_consen 165 ILTDIDRDGTMQGPD--LELLKQLAEAVNIPVIA 196 (229)
T ss_dssp EEEETTTTTTSSS----HHHHHHHHHHHSSEEEE
T ss_pred EEeeccccCCcCCCC--HHHHHHHHHHcCCCEEE
Confidence 787753 33 36677777777888766
No 218
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=69.60 E-value=56 Score=33.97 Aligned_cols=96 Identities=15% Similarity=0.011 Sum_probs=58.1
Q ss_pred HHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCC-
Q 019107 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT- 251 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~- 251 (346)
.++...+.++|++=+|.... .++...+..++.. +..+++|+. +-.++++-+.+.+.++.+.. .+++.+=+-+.
T Consensus 102 ll~~~~~~~~d~iDiEl~~~-~~~~~~~~~~~~~--~~~vI~S~H--~f~~tP~~~el~~~~~~~~~-~gaDi~Kia~~~ 175 (529)
T PLN02520 102 ALRLAMELGADYVDVELKVA-HEFINSISGKKPE--KCKVIVSSH--NYENTPSVEELGNLVARIQA-TGADIVKIATTA 175 (529)
T ss_pred HHHHHHHhCCCEEEEEcCCc-hhHHHHHHhhhhc--CCEEEEEec--CCCCCCCHHHHHHHHHHHHH-hCCCEEEEecCC
Confidence 34455567799999996433 3555556666654 378999885 22333343344455555544 36777777775
Q ss_pred -ChhhHHHHHHHHhhhcCCcEEEee
Q 019107 252 -SPRFIHGLILSVRKVTSKPVIIYP 275 (346)
Q Consensus 252 -~p~~~~~~l~~l~~~~~~pl~vyp 275 (346)
+++.+..+++.... .+.|++.+.
T Consensus 176 ~~~~D~~~ll~~~~~-~~~p~i~~~ 199 (529)
T PLN02520 176 LDITDVARMFQITVH-SQVPTIGLV 199 (529)
T ss_pred CCHHHHHHHHHHHhh-cCCCEEEEe
Confidence 46666677764433 367877654
No 219
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=69.48 E-value=1.2e+02 Score=29.71 Aligned_cols=112 Identities=14% Similarity=0.091 Sum_probs=66.2
Q ss_pred CCCHHH---HHHHHHHHHHHHHhCCCCEEEEcc------------CCC-------------HHHHHHHHHHHHHh-CCCC
Q 019107 160 AVSLET---LKEFHRRRVLILANSGADLIAFET------------IPN-------------KLEAKAYAELLEEE-GITI 210 (346)
Q Consensus 160 ~~~~~e---~~~~~~~~i~~l~~~gvD~i~~ET------------~~~-------------~~E~~a~~~a~~~~-~~~~ 210 (346)
.++.+| +.+.|.+.++.+.++|.|.+=+-. ..+ ..-+..+++++++. +.+.
T Consensus 126 ~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~ 205 (353)
T cd02930 126 ELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDF 205 (353)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCc
Confidence 355555 555677778878889999995532 112 44566667777774 4334
Q ss_pred cEEEEEEEcCCCcccCCCCHHHHHHHhhc--CCCceEEEECCC-C--hh----------hHHHHHHHHhhhcCCcEEE
Q 019107 211 PAWFSFNSKDGINVVSGDSILECASIADS--CEQVVAVGINCT-S--PR----------FIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 211 pv~is~~~~~~~~l~~G~~~~~av~~~~~--~~~~~avGvNC~-~--p~----------~~~~~l~~l~~~~~~pl~v 273 (346)
|+.+-++..+ ....|.++.++++.++. ..+++.+-|... + +. ....+.+++++..+.|+++
T Consensus 206 ~v~iRi~~~D--~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~ 281 (353)
T cd02930 206 IIIYRLSMLD--LVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIA 281 (353)
T ss_pred eEEEEecccc--cCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEE
Confidence 5555554332 23356787777665432 246777766432 1 10 1244566778778889776
No 220
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=69.18 E-value=80 Score=28.63 Aligned_cols=94 Identities=22% Similarity=0.213 Sum_probs=53.3
Q ss_pred HHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCC-----c-------ccCCCCHHHHHHHhhcCCCce
Q 019107 177 LANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGI-----N-------VVSGDSILECASIADSCEQVV 244 (346)
Q Consensus 177 l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~-----~-------l~~G~~~~~av~~~~~~~~~~ 244 (346)
+.+.|+|.+++-|. .+.....+.++.++.+ ...+++++.+..+. . -..+.++.+.+..+.. .+++
T Consensus 92 ~~~~G~~~vilg~~-~l~~~~~~~~~~~~~~-~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~G~d 168 (232)
T TIGR03572 92 LLSLGADKVSINTA-ALENPDLIEEAARRFG-SQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQ-LGAG 168 (232)
T ss_pred HHHcCCCEEEEChh-HhcCHHHHHHHHHHcC-CceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHH-cCCC
Confidence 34468999987643 2222334444455554 23367788776531 1 1134556677777755 4677
Q ss_pred EEEECCCChh-----hHHHHHHHHhhhcCCcEEE
Q 019107 245 AVGINCTSPR-----FIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 245 avGvNC~~p~-----~~~~~l~~l~~~~~~pl~v 273 (346)
.+-+.....+ .-..+++++.+..+.|+++
T Consensus 169 ~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia 202 (232)
T TIGR03572 169 EILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIA 202 (232)
T ss_pred EEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEE
Confidence 7766663221 2256677777766778654
No 221
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=69.17 E-value=15 Score=33.74 Aligned_cols=41 Identities=27% Similarity=0.343 Sum_probs=32.7
Q ss_pred HHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEE
Q 019107 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSF 216 (346)
Q Consensus 172 ~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~ 216 (346)
...+.|.+.|+|+|++..|..-.+.+..++ +.++ +||+.|=
T Consensus 169 ~Aa~~L~~~gadlIvLDCmGYt~~~r~~~~--~~~g--~PVlLsr 209 (221)
T PF07302_consen 169 AAARELAEQGADLIVLDCMGYTQEMRDIVQ--RALG--KPVLLSR 209 (221)
T ss_pred HHHHHHHhcCCCEEEEECCCCCHHHHHHHH--HHhC--CCEEeHH
Confidence 356678889999999999999999887766 3334 9998653
No 222
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=69.14 E-value=1.1e+02 Score=29.40 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=34.2
Q ss_pred ChHHHHHHHHHHHHcCCeEEeecCC----CchHHHHHHHHHHcCC
Q 019107 295 RDEDFVSYIGKWRDAGASLFGGCCR----TTPNTIKAISRVLSNK 335 (346)
Q Consensus 295 ~~~~~~~~~~~~~~~G~~ivGGCCG----t~P~hI~al~~~~~~~ 335 (346)
++++..+.+++.++.|.-|++--|| |-++.|+++.++++.+
T Consensus 294 t~eeI~~~v~~~l~~~~~Il~~gcgi~~~tp~eni~a~v~a~~~~ 338 (340)
T TIGR01463 294 TPEKVKKLAKEVLYNGGDIVMPGCDIDWMTPLENLKAMIEACKSI 338 (340)
T ss_pred CHHHHHHHHHHHHHcCCeEECCCCCCCCCCCHHHHHHHHHHHHhc
Confidence 5788999999999988888877777 5778999999888764
No 223
>PRK00865 glutamate racemase; Provisional
Probab=69.13 E-value=1e+02 Score=28.82 Aligned_cols=53 Identities=23% Similarity=0.242 Sum_probs=38.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEE
Q 019107 156 DYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAW 213 (346)
Q Consensus 156 ~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~ 213 (346)
+|+. -+.+++.++-.+.++.|.+.|+|++++=....- ..+++.+++.- ++||+
T Consensus 43 PYG~-ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa~---~~~l~~lr~~~-~iPvi 95 (261)
T PRK00865 43 PYGE-KSEEEIRERTLEIVEFLLEYGVKMLVIACNTAS---AVALPDLRERY-DIPVV 95 (261)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHHhCCCCEEEEeCchHH---HHHHHHHHHhC-CCCEE
Confidence 4543 488999999999999999999999986544321 12445566543 58887
No 224
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=69.00 E-value=69 Score=26.95 Aligned_cols=84 Identities=18% Similarity=0.098 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHhhcCCCceEEEECCCC---hhhHHHHHHHHhhh-c-CCcEEEeeCCCCccccccccccccCCCChHHHH
Q 019107 226 SGDSILECASIADSCEQVVAVGINCTS---PRFIHGLILSVRKV-T-SKPVIIYPNSGETYNAELKKWVESTGVRDEDFV 300 (346)
Q Consensus 226 ~G~~~~~av~~~~~~~~~~avGvNC~~---p~~~~~~l~~l~~~-~-~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~ 300 (346)
...++++.++.+.+ .++++|++.|.. ...+..+++.+++. . +.++++= |.. ...+.+|.
T Consensus 39 ~~vp~e~i~~~a~~-~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vG---G~~------------~~~~~~~~ 102 (137)
T PRK02261 39 VMTSQEEFIDAAIE-TDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVG---GNL------------VVGKHDFE 102 (137)
T ss_pred CCCCHHHHHHHHHH-cCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEE---CCC------------CCCccChH
Confidence 34678889988866 479999999963 45677778887765 2 2233331 110 01234566
Q ss_pred HHHHHHHHcCC-eEEeecCCCchHHHHH
Q 019107 301 SYIGKWRDAGA-SLFGGCCRTTPNTIKA 327 (346)
Q Consensus 301 ~~~~~~~~~G~-~ivGGCCGt~P~hI~a 327 (346)
+..+++.+.|+ .++++ ||.+++|-.
T Consensus 103 ~~~~~l~~~G~~~vf~~--~~~~~~i~~ 128 (137)
T PRK02261 103 EVEKKFKEMGFDRVFPP--GTDPEEAID 128 (137)
T ss_pred HHHHHHHHcCCCEEECc--CCCHHHHHH
Confidence 66677888885 56775 677777754
No 225
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=68.58 E-value=63 Score=29.96 Aligned_cols=122 Identities=15% Similarity=0.177 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHh---hcCCCceEEEEC---CC-------ChhhHHH
Q 019107 192 NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIA---DSCEQVVAVGIN---CT-------SPRFIHG 258 (346)
Q Consensus 192 ~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~---~~~~~~~avGvN---C~-------~p~~~~~ 258 (346)
++.|+...++-+.+.- ++|+++-+ ++| -|.++..+.+.+ .. .|+.++-|. |. +++.+..
T Consensus 53 t~~e~~~~~~~I~~~~-~iPv~vD~---d~G---yG~~~~~v~~tv~~~~~-aG~agi~IEDq~~~~~~~~l~~~ee~~~ 124 (238)
T PF13714_consen 53 TLTEMLAAVRRIARAV-SIPVIVDA---DTG---YGNDPENVARTVRELER-AGAAGINIEDQRCGHGGKQLVSPEEMVA 124 (238)
T ss_dssp -HHHHHHHHHHHHHHS-SSEEEEE----TTT---SSSSHHHHHHHHHHHHH-CT-SEEEEESBSTTTSTT-B--HHHHHH
T ss_pred CHHHHHHHHHHHHhhh-cCcEEEEc---ccc---cCchhHHHHHHHHHHHH-cCCcEEEeeccccCCCCCceeCHHHHHH
Confidence 5566666665555543 68988655 333 355455554444 33 466666554 54 2333333
Q ss_pred HHHHHhhhcCC---cEEEeeCCCCcccccccccc-ccCCCChHHHHHHHHHHHHcCCeEEeecCCCchHHHHHHHHHHc
Q 019107 259 LILSVRKVTSK---PVIIYPNSGETYNAELKKWV-ESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLS 333 (346)
Q Consensus 259 ~l~~l~~~~~~---pl~vypN~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~~ivGGCCGt~P~hI~al~~~~~ 333 (346)
=|+...++.+. -+++.=++ +. .. ..-++-.+.++.+.++||..|==.+-.+.++|+++++.++
T Consensus 125 kI~Aa~~a~~~~~~~I~ARTDa----------~~~~~--~~~deaI~R~~aY~eAGAD~ifi~~~~~~~~i~~~~~~~~ 191 (238)
T PF13714_consen 125 KIRAAVDARRDPDFVIIARTDA----------FLRAE--EGLDEAIERAKAYAEAGADMIFIPGLQSEEEIERIVKAVD 191 (238)
T ss_dssp HHHHHHHHHSSTTSEEEEEECH----------HCHHH--HHHHHHHHHHHHHHHTT-SEEEETTSSSHHHHHHHHHHHS
T ss_pred HHHHHHHhccCCeEEEEEeccc----------cccCC--CCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhcC
Confidence 34433333221 12222222 11 00 0124455556778899999998888899999999999984
No 226
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=68.55 E-value=33 Score=32.81 Aligned_cols=64 Identities=14% Similarity=0.137 Sum_probs=43.4
Q ss_pred HHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECC
Q 019107 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC 250 (346)
+....+.|+|+|.+..| ++++++.+++.+++...+.|+.+| .|-++..+.+.+. .+++.|-+-+
T Consensus 209 a~eA~~~GaD~I~LDn~-~~e~l~~av~~~~~~~~~i~leAs----------GGIt~~ni~~ya~--tGvD~Isvgs 272 (288)
T PRK07428 209 VQEALEYGADIIMLDNM-PVDLMQQAVQLIRQQNPRVKIEAS----------GNITLETIRAVAE--TGVDYISSSA 272 (288)
T ss_pred HHHHHHcCCCEEEECCC-CHHHHHHHHHHHHhcCCCeEEEEE----------CCCCHHHHHHHHH--cCCCEEEEch
Confidence 33355689999999987 678999988877764323443322 4667777776653 5788777665
No 227
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=68.52 E-value=47 Score=32.73 Aligned_cols=94 Identities=18% Similarity=0.248 Sum_probs=58.4
Q ss_pred HHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHH---hCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEE
Q 019107 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEE---EGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI 248 (346)
Q Consensus 172 ~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~---~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGv 248 (346)
.||..|.++|+|++-+ |+|+.++++++-+..++ .+.+.|++.-+.|+. .-|+..++ . ++.|=+
T Consensus 35 ~QI~~L~~aGceivRv-avp~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~----------~lAl~a~~--~-v~kiRI 100 (359)
T PF04551_consen 35 AQIKRLEEAGCEIVRV-AVPDMEAAEALKEIKKRLRALGSPIPLVADIHFDY----------RLALEAIE--A-VDKIRI 100 (359)
T ss_dssp HHHHHHHHCT-SEEEE-EE-SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTC----------HHHHHHHH--C--SEEEE
T ss_pred HHHHHHHHcCCCEEEE-cCCCHHHHHHHHHHHHhhccCCCCCCeeeecCCCH----------HHHHHHHH--H-hCeEEE
Confidence 5899999999999874 78999999888776555 345699998887732 22343343 2 566777
Q ss_pred CCCC------------hhhHHHHHHHHhhhcCCcEEEeeCCCCc
Q 019107 249 NCTS------------PRFIHGLILSVRKVTSKPVIIYPNSGET 280 (346)
Q Consensus 249 NC~~------------p~~~~~~l~~l~~~~~~pl~vypN~g~~ 280 (346)
|=.. .+.+..+++..++. ..|+=+=-|+|.+
T Consensus 101 NPGNi~~~~~~~~g~~~~~~~~vv~~ake~-~ipIRIGvN~GSL 143 (359)
T PF04551_consen 101 NPGNIVDEFQEELGSIREKVKEVVEAAKER-GIPIRIGVNSGSL 143 (359)
T ss_dssp -TTTSS----SS-SS-HHHHHHHHHHHHHH-T-EEEEEEEGGGS
T ss_pred CCCcccccccccccchHHHHHHHHHHHHHC-CCCEEEecccccC
Confidence 7542 34556666655543 6776666677754
No 228
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=68.16 E-value=1e+02 Score=28.64 Aligned_cols=106 Identities=15% Similarity=0.171 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEE-----EEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCC--CHHHHH
Q 019107 162 SLETLKEFHRRRVLILANSGADLI-----AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGD--SILECA 234 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~~~gvD~i-----~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~--~~~~av 234 (346)
+.+|+.. +++.+...++|++ .++.+++...+...+..+++.-.++|+++++....+|=...+. .-.+.+
T Consensus 26 ~~~e~~~----~~~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll 101 (253)
T PRK02412 26 TLEEVLA----EALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKFAGKPLLFTFRTAKEGGEIALSDEEYLALI 101 (253)
T ss_pred CHHHHHH----HHHHHhhcCCCEEEEEechhhccCCHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHHHHHHH
Confidence 5677665 3344444678877 3566666666666666666542258999999765543222222 112233
Q ss_pred HHhhcCCC-ceEEEECCC-ChhhHHHHHHHHhhhcCCcEEE
Q 019107 235 SIADSCEQ-VVAVGINCT-SPRFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 235 ~~~~~~~~-~~avGvNC~-~p~~~~~~l~~l~~~~~~pl~v 273 (346)
+.+.. .+ ++.|=|.=. ..+.+..++...++. ...+++
T Consensus 102 ~~~~~-~~~~d~vDiEl~~~~~~~~~l~~~~~~~-~~kvI~ 140 (253)
T PRK02412 102 KAVIK-SGLPDYIDVELFSGKDVVKEMVAFAHEH-GVKVVL 140 (253)
T ss_pred HHHHh-cCCCCEEEEeccCChHHHHHHHHHHHHc-CCEEEE
Confidence 33322 23 677767633 334555555554432 334443
No 229
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=68.09 E-value=1e+02 Score=28.55 Aligned_cols=91 Identities=11% Similarity=0.001 Sum_probs=56.9
Q ss_pred CCCCEEEEccCC--CHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCC--Chhh
Q 019107 180 SGADLIAFETIP--NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT--SPRF 255 (346)
Q Consensus 180 ~gvD~i~~ET~~--~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~--~p~~ 255 (346)
.++|++=+|... ..+....++..+++.+ ..+++|.. +-..+++-+.+.+.+..+.. .+++.+=+-|. ++..
T Consensus 96 ~~~d~vDiE~~~~~~~~~~~~l~~~~~~~~--~~vI~S~H--~F~~TP~~~~l~~~~~~m~~-~gaDi~KiAv~~~~~~D 170 (238)
T PRK13575 96 NGIDMIDIEWQADIDIEKHQRLITHLQQYN--KEVVISHH--NFESTPPLDELKFIFFKMQK-FNPEYVKLAVMPHNKND 170 (238)
T ss_pred CCCCEEEEEcccCCChHHHHHHHHHHHHcC--CEEEEecC--CCCCCCCHHHHHHHHHHHHH-hCCCEEEEEecCCCHHH
Confidence 458999999653 4555566666666654 88999885 33333444445556666554 35677666665 5777
Q ss_pred HHHHHHHHhhh---cCCcEEEee
Q 019107 256 IHGLILSVRKV---TSKPVIIYP 275 (346)
Q Consensus 256 ~~~~l~~l~~~---~~~pl~vyp 275 (346)
+..+++..... .+.|+++.+
T Consensus 171 vl~Ll~~~~~~~~~~~~p~i~i~ 193 (238)
T PRK13575 171 VLNLLQAMSTFSDTMDCKVVGIS 193 (238)
T ss_pred HHHHHHHHHHHHhccCCCEEEEe
Confidence 77777655432 456876654
No 230
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=67.94 E-value=93 Score=28.03 Aligned_cols=75 Identities=13% Similarity=0.200 Sum_probs=44.2
Q ss_pred HHHhCCCCEEEEccCCCH-----HHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECC
Q 019107 176 ILANSGADLIAFETIPNK-----LEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (346)
Q Consensus 176 ~l~~~gvD~i~~ET~~~~-----~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC 250 (346)
.+.+.|+|.+.+=++.-. .....+.+..+.. +.|+++.=-+ .+++++-..+. .+++.+-++.
T Consensus 38 ~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~--~~pv~~~GGI---------~~~ed~~~~~~--~Ga~~vilg~ 104 (233)
T PRK00748 38 AWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKAV--DIPVQVGGGI---------RSLETVEALLD--AGVSRVIIGT 104 (233)
T ss_pred HHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHHC--CCCEEEcCCc---------CCHHHHHHHHH--cCCCEEEECc
Confidence 344578988887665332 2233344444443 4888863211 35666655554 3678888888
Q ss_pred C---ChhhHHHHHHHH
Q 019107 251 T---SPRFIHGLILSV 263 (346)
Q Consensus 251 ~---~p~~~~~~l~~l 263 (346)
. .|+.+..+.+.+
T Consensus 105 ~~l~~~~~l~ei~~~~ 120 (233)
T PRK00748 105 AAVKNPELVKEACKKF 120 (233)
T ss_pred hHHhCHHHHHHHHHHh
Confidence 5 466666666665
No 231
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=67.58 E-value=34 Score=32.67 Aligned_cols=59 Identities=8% Similarity=0.050 Sum_probs=42.1
Q ss_pred HHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECC
Q 019107 176 ILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (346)
Q Consensus 176 ~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC 250 (346)
..++.|+|+|++..| +++|++.+++.++. .. ++.. ..|-++..+.+... .+++.|.+-.
T Consensus 209 ea~~~gaDiI~LDn~-s~e~l~~av~~~~~---~~--~lea--------SGGI~~~ni~~yA~--tGVD~Is~Ga 267 (281)
T PRK06106 209 EALELGVDAVLLDNM-TPDTLREAVAIVAG---RA--ITEA--------SGRITPETAPAIAA--SGVDLISVGW 267 (281)
T ss_pred HHHHcCCCEEEeCCC-CHHHHHHHHHHhCC---Cc--eEEE--------ECCCCHHHHHHHHh--cCCCEEEeCh
Confidence 345789999999998 77899988886642 22 3333 25677777777664 5788888766
No 232
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=67.42 E-value=69 Score=30.25 Aligned_cols=101 Identities=11% Similarity=0.049 Sum_probs=64.5
Q ss_pred HHHHHHHhCCCCEEEEccCCCHH---HHHHHHHHHHHhCCCCcEEEEEEEc--CCC-c-------ccCCCCHHHHHHHhh
Q 019107 172 RRVLILANSGADLIAFETIPNKL---EAKAYAELLEEEGITIPAWFSFNSK--DGI-N-------VVSGDSILECASIAD 238 (346)
Q Consensus 172 ~~i~~l~~~gvD~i~~ET~~~~~---E~~a~~~a~~~~~~~~pv~is~~~~--~~~-~-------l~~G~~~~~av~~~~ 238 (346)
++++.+.+.|||-+++-|.--.. .-..+.++++++| +-.+++++.++ +.. + -.++.++.+.+..+.
T Consensus 95 e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G-~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~ 173 (262)
T PLN02446 95 ENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVG-KQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFL 173 (262)
T ss_pred HHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhC-CCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHH
Confidence 46777888999999998864221 1445566777776 46799999886 331 2 124557777655554
Q ss_pred cCCCceEEEECCCChhhH-----HHHHHHHhhhcCCcEEEe
Q 019107 239 SCEQVVAVGINCTSPRFI-----HGLILSVRKVTSKPVIIY 274 (346)
Q Consensus 239 ~~~~~~avGvNC~~p~~~-----~~~l~~l~~~~~~pl~vy 274 (346)
. .++..+-++..+-+-+ ..+++++.+..+.|+++-
T Consensus 174 ~-~g~~eii~TdI~rDGtl~G~d~el~~~l~~~~~ipVIAS 213 (262)
T PLN02446 174 A-AYCDEFLVHGVDVEGKRLGIDEELVALLGEHSPIPVTYA 213 (262)
T ss_pred H-hCCCEEEEEEEcCCCcccCCCHHHHHHHHhhCCCCEEEE
Confidence 4 2466666666432211 456777777778888763
No 233
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=67.40 E-value=1.3e+02 Score=29.67 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhCCCCEEEE-ccCC--CHHHHHHHHHHHHHhCCCCcEEEEEEEcCCC
Q 019107 169 FHRRRVLILANSGADLIAF-ETIP--NKLEAKAYAELLEEEGITIPAWFSFNSKDGI 222 (346)
Q Consensus 169 ~~~~~i~~l~~~gvD~i~~-ET~~--~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~ 222 (346)
+..+.++.+.+.|+|.|.+ -|+. .+.+...+++.+++. .++-+.|.+.++.
T Consensus 146 ~l~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~---~~~~l~~H~Hnd~ 199 (378)
T PRK11858 146 FLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEA---VDIPIEVHCHNDF 199 (378)
T ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHh---cCCeEEEEecCCc
Confidence 3444556677789998854 3443 677888888888764 2455788887764
No 234
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=67.05 E-value=61 Score=29.83 Aligned_cols=94 Identities=15% Similarity=0.088 Sum_probs=53.3
Q ss_pred HHHHHhCCCCEEEEccC--CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCC-----CcccCCCCHHHHHHHhhcCCCceEE
Q 019107 174 VLILANSGADLIAFETI--PNKLEAKAYAELLEEEGITIPAWFSFNSKDG-----INVVSGDSILECASIADSCEQVVAV 246 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~--~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~-----~~l~~G~~~~~av~~~~~~~~~~av 246 (346)
++.+.+.|+|-+.+-|. .+++-++ +++++.+ ..+.+|+.++.. +-..+..++.+.++.+.+ .++..+
T Consensus 90 v~~~l~~Ga~kvviGs~~l~~p~l~~---~i~~~~~--~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~-~G~~~i 163 (241)
T PRK14024 90 LEAALATGCARVNIGTAALENPEWCA---RVIAEHG--DRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDS-AGCSRY 163 (241)
T ss_pred HHHHHHCCCCEEEECchHhCCHHHHH---HHHHHhh--hhEEEEEEEeccEeccCCeeecCccHHHHHHHHHh-cCCCEE
Confidence 44456689999987653 4544444 4444444 236677665432 112233456677777755 466666
Q ss_pred EECCCChh-----hHHHHHHHHhhhcCCcEEE
Q 019107 247 GINCTSPR-----FIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 247 GvNC~~p~-----~~~~~l~~l~~~~~~pl~v 273 (346)
-++....+ .-..+++++.+..+.|+++
T Consensus 164 iv~~~~~~g~~~G~d~~~i~~i~~~~~ipvia 195 (241)
T PRK14024 164 VVTDVTKDGTLTGPNLELLREVCARTDAPVVA 195 (241)
T ss_pred EEEeecCCCCccCCCHHHHHHHHhhCCCCEEE
Confidence 66553211 1245667777777788655
No 235
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=66.74 E-value=29 Score=33.62 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=13.0
Q ss_pred HHHhCCCCEEEEccCC
Q 019107 176 ILANSGADLIAFETIP 191 (346)
Q Consensus 176 ~l~~~gvD~i~~ET~~ 191 (346)
.+.+.|+-+++.-|+.
T Consensus 31 ~~~~~G~Gavv~ktit 46 (325)
T cd04739 31 RLEDAGAGAIVLPSLF 46 (325)
T ss_pred HHHHCCCcEEEecccc
Confidence 3667899999999985
No 236
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=66.45 E-value=59 Score=33.42 Aligned_cols=95 Identities=15% Similarity=0.137 Sum_probs=55.6
Q ss_pred HHhCCCCEEEEccCCCHHHH-------HHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHH---HHHhhc-CCCceE
Q 019107 177 LANSGADLIAFETIPNKLEA-------KAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILEC---ASIADS-CEQVVA 245 (346)
Q Consensus 177 l~~~gvD~i~~ET~~~~~E~-------~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~a---v~~~~~-~~~~~a 245 (346)
+...+.|++++|-...+.+- ....+.++..+ .||++-..++... + ...+..+ .+.+.+ ...+.+
T Consensus 313 ~~~~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~--~PVILV~~~~~g~-i--~~~~~~i~G~~~~l~~~~i~i~G 387 (476)
T PRK06278 313 VKNSDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKALG--FPVYIVSSCSKSG-I--EGAFVESMAYYSLLKKMGVKVEG 387 (476)
T ss_pred HHhcCCCEEEEECCCCcccccCCCCccccHHHHHHHhC--CCEEEEEcCCCCh-H--HHHHHHHHHHHHHHhcCCCcEEE
Confidence 33347899999987666554 13457778765 9999877653221 0 0011111 122322 235779
Q ss_pred EEECCCChhhHHHHHHHHhhhcCCcEEEeeC
Q 019107 246 VGINCTSPRFIHGLILSVRKVTSKPVIIYPN 276 (346)
Q Consensus 246 vGvNC~~p~~~~~~l~~l~~~~~~pl~vypN 276 (346)
|-+|++.++.....++.+.+.+..|++-+|-
T Consensus 388 VIlN~v~~~~~~~~~~~~le~~gvpVLG~~~ 418 (476)
T PRK06278 388 IILNKVYNMEIFEKVKKIAENSNINLIGVGK 418 (476)
T ss_pred EEEECCCcHHHHHHHHHHHHhcCCCEEEecc
Confidence 9999996544445555554556888655454
No 237
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=66.42 E-value=71 Score=31.40 Aligned_cols=135 Identities=16% Similarity=0.118 Sum_probs=72.2
Q ss_pred HHHHHhCCCCEEEEccC----------CCHHHHHHHHHHHHHhCCCCcEEEEEEE-cCCCcccCCCCHHHHHHHhhcCCC
Q 019107 174 VLILANSGADLIAFETI----------PNKLEAKAYAELLEEEGITIPAWFSFNS-KDGINVVSGDSILECASIADSCEQ 242 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~----------~~~~E~~a~~~a~~~~~~~~pv~is~~~-~~~~~l~~G~~~~~av~~~~~~~~ 242 (346)
+..+.+.|+|.+.+--- .+.+|++.+++.+.+.| +.++|.+.. --+..+ +.+.+.+..+.+ .+
T Consensus 19 l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~g--kk~~V~~N~~~~~~~~---~~~~~~l~~l~e-~G 92 (347)
T COG0826 19 LKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAG--KKVYVAVNTLLHNDEL---ETLERYLDRLVE-LG 92 (347)
T ss_pred HHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcC--CeEEEEeccccccchh---hHHHHHHHHHHH-cC
Confidence 44566688999976522 36677999999999977 666666642 111111 224566666655 58
Q ss_pred ceEEEECCCChhhHHHHHHHHhhhcCCcEEEeeCCCCcccccc---------ccccccCCCChHHHHHHHHHH--HHcCC
Q 019107 243 VVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAEL---------KKWVESTGVRDEDFVSYIGKW--RDAGA 311 (346)
Q Consensus 243 ~~avGvNC~~p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~--~~~G~ 311 (346)
+++|=++ .|-. ..++++. ..+.|+.+-+-+.. ++..+ ..|...+-++-+++.+..++. ++.=+
T Consensus 93 vDaviv~--Dpg~-i~l~~e~--~p~l~ih~S~q~~v-~N~~~~~f~~~~G~~rvVl~rEls~~ei~~i~~~~~~veiEv 166 (347)
T COG0826 93 VDAVIVA--DPGL-IMLARER--GPDLPIHVSTQANV-TNAETAKFWKELGAKRVVLPRELSLEEIKEIKEQTPDVEIEV 166 (347)
T ss_pred CCEEEEc--CHHH-HHHHHHh--CCCCcEEEeeeEec-CCHHHHHHHHHcCCEEEEeCccCCHHHHHHHHHhCCCceEEE
Confidence 8887765 3322 2333332 23566554442211 11111 112222234455566655554 33346
Q ss_pred eEEeecCCC
Q 019107 312 SLFGGCCRT 320 (346)
Q Consensus 312 ~ivGGCCGt 320 (346)
-+-|+||=.
T Consensus 167 fVhGalcia 175 (347)
T COG0826 167 FVHGALCIA 175 (347)
T ss_pred EEecchhhc
Confidence 677888854
No 238
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=66.21 E-value=1e+02 Score=27.98 Aligned_cols=103 Identities=13% Similarity=0.088 Sum_probs=57.8
Q ss_pred HHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCC
Q 019107 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT 251 (346)
Q Consensus 172 ~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~ 251 (346)
++++...++|+||++ .|...+ .+++.+++.+ +|++ +.-.++.++....+ .+++.|-+ .
T Consensus 78 ~~a~~a~~aGA~Fiv---sP~~~~--~vi~~a~~~~--i~~i-----------PG~~TptEi~~a~~--~Ga~~vKl--F 135 (212)
T PRK05718 78 EQLAQAIEAGAQFIV---SPGLTP--PLLKAAQEGP--IPLI-----------PGVSTPSELMLGME--LGLRTFKF--F 135 (212)
T ss_pred HHHHHHHHcCCCEEE---CCCCCH--HHHHHHHHcC--CCEe-----------CCCCCHHHHHHHHH--CCCCEEEE--c
Confidence 456667789999997 566655 5666677754 7776 12246677666554 35565555 2
Q ss_pred ChhhH--HHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeEEee
Q 019107 252 SPRFI--HGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGG 316 (346)
Q Consensus 252 ~p~~~--~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivGG 316 (346)
+.+.+ ...++.++.... .+-+.|-.| .++ +.+++|++.|..++||
T Consensus 136 Pa~~~gg~~~lk~l~~p~p-~~~~~ptGG---------------V~~----~ni~~~l~ag~v~~vg 182 (212)
T PRK05718 136 PAEASGGVKMLKALAGPFP-DVRFCPTGG---------------ISP----ANYRDYLALPNVLCIG 182 (212)
T ss_pred cchhccCHHHHHHHhccCC-CCeEEEeCC---------------CCH----HHHHHHHhCCCEEEEE
Confidence 11211 355555553221 022234444 334 3455699998666666
No 239
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=66.08 E-value=1.1e+02 Score=28.30 Aligned_cols=96 Identities=16% Similarity=0.219 Sum_probs=58.1
Q ss_pred HHHHHhCCCCEEEEcc-CCC--------------HHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhh
Q 019107 174 VLILANSGADLIAFET-IPN--------------KLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET-~~~--------------~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~ 238 (346)
++...+.|+|.|-+-. .++ ++.++.+++.+++.| . .++|.+.+..+. +-+-+.+.++.+.
T Consensus 75 v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G--~--~v~~~~~~~~~~-~~~~~~~~~~~~~ 149 (259)
T cd07939 75 IEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRG--L--FVSVGAEDASRA-DPDFLIEFAEVAQ 149 (259)
T ss_pred HHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC--C--eEEEeeccCCCC-CHHHHHHHHHHHH
Confidence 3445678999876542 222 234556677778766 4 445666554432 2223334444444
Q ss_pred cCCCceEEEECCC----ChhhHHHHHHHHhhhcCCcEEEee
Q 019107 239 SCEQVVAVGINCT----SPRFIHGLILSVRKVTSKPVIIYP 275 (346)
Q Consensus 239 ~~~~~~avGvNC~----~p~~~~~~l~~l~~~~~~pl~vyp 275 (346)
+ .+++.|.+.=+ .|+.+..+++.+++..+.|+.+..
T Consensus 150 ~-~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~ 189 (259)
T cd07939 150 E-AGADRLRFADTVGILDPFTTYELIRRLRAATDLPLEFHA 189 (259)
T ss_pred H-CCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4 46676665443 499999999999887667777654
No 240
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=66.08 E-value=1.1e+02 Score=28.82 Aligned_cols=88 Identities=18% Similarity=0.186 Sum_probs=55.0
Q ss_pred HHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHh-hcCCCce-EEEECC-
Q 019107 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIA-DSCEQVV-AVGINC- 250 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~-~~~~~~~-avGvNC- 250 (346)
++.+.++|||.+++=-+| ++|+...++.+++.+ +..+.-++. ++..+-++.+ ....+.. .++.+-
T Consensus 110 ~~~~~~aGvdGviipDLp-~ee~~~~~~~~~~~g--l~~I~lvap---------~t~~eri~~i~~~s~gfIY~vs~~Gv 177 (258)
T PRK13111 110 AADAAEAGVDGLIIPDLP-PEEAEELRAAAKKHG--LDLIFLVAP---------TTTDERLKKIASHASGFVYYVSRAGV 177 (258)
T ss_pred HHHHHHcCCcEEEECCCC-HHHHHHHHHHHHHcC--CcEEEEeCC---------CCCHHHHHHHHHhCCCcEEEEeCCCC
Confidence 456778999999987776 479999999999977 544422221 1112222222 2223322 345544
Q ss_pred CC-----hhhHHHHHHHHhhhcCCcEEE
Q 019107 251 TS-----PRFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 251 ~~-----p~~~~~~l~~l~~~~~~pl~v 273 (346)
++ +..+...++.++++.+.|+++
T Consensus 178 TG~~~~~~~~~~~~i~~vk~~~~~pv~v 205 (258)
T PRK13111 178 TGARSADAADLAELVARLKAHTDLPVAV 205 (258)
T ss_pred CCcccCCCccHHHHHHHHHhcCCCcEEE
Confidence 22 466788899999888899876
No 241
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=66.02 E-value=65 Score=31.21 Aligned_cols=130 Identities=18% Similarity=0.143 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEccCC----CHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhc-CCC
Q 019107 168 EFHRRRVLILANSGADLIAFETIP----NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS-CEQ 242 (346)
Q Consensus 168 ~~~~~~i~~l~~~gvD~i~~ET~~----~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~-~~~ 242 (346)
+.-.+.+++..+.|+=+-+ -+.+ + .|...-.+.+++...+.|+++++.+.... |.+..++.+.++. ...
T Consensus 69 ~in~~La~~a~~~g~~~~~-Gs~~~~~~~-~e~~~~~~~vr~~~~~~p~~~Nl~~~~~~----~~~~~~~~~~i~~~~ad 142 (326)
T cd02811 69 EINRNLAEAAEELGIAMGV-GSQRAALED-PELAESFTVVREAPPNGPLIANLGAVQLN----GYGVEEARRAVEMIEAD 142 (326)
T ss_pred HHHHHHHHHHHHcCCCeEe-cCchhhccC-hhhhhHHHHHHHhCCCceEEeecCccccC----CCCHHHHHHHHHhcCCC
Confidence 3344556666666643222 2221 2 23335556677766569999998764321 4455554444432 134
Q ss_pred ceEEEECCC----Ch---hh---HHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCe
Q 019107 243 VVAVGINCT----SP---RF---IHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGAS 312 (346)
Q Consensus 243 ~~avGvNC~----~p---~~---~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 312 (346)
...+++||. .| .. +...|+.+.+..+.|+++.-+.. ..+ .+.++.+.+.|+.
T Consensus 143 alel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~vPVivK~~g~--------------g~s----~~~a~~l~~~Gvd 204 (326)
T cd02811 143 ALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPVIVKEVGF--------------GIS----RETAKRLADAGVK 204 (326)
T ss_pred cEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCC--------------CCC----HHHHHHHHHcCCC
Confidence 566777772 11 12 23556677766789999874331 012 2345567778865
Q ss_pred E--EeecCCCc
Q 019107 313 L--FGGCCRTT 321 (346)
Q Consensus 313 i--vGGCCGt~ 321 (346)
. |+|.+||+
T Consensus 205 ~I~vsG~GGt~ 215 (326)
T cd02811 205 AIDVAGAGGTS 215 (326)
T ss_pred EEEECCCCCCc
Confidence 5 56766654
No 242
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=65.88 E-value=81 Score=29.36 Aligned_cols=95 Identities=17% Similarity=0.160 Sum_probs=54.7
Q ss_pred HHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCC----c-c------cCCCCHHHHHHHhhcCCCce
Q 019107 176 ILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGI----N-V------VSGDSILECASIADSCEQVV 244 (346)
Q Consensus 176 ~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~----~-l------~~G~~~~~av~~~~~~~~~~ 244 (346)
.+.+.|+|.+++-|. .++....+.+++++.+ +-.+.+|+.++... + . ....++.+.+..+.+ .++.
T Consensus 91 ~l~~~G~~~vvigs~-~~~~~~~~~~~~~~~~-~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~-~g~~ 167 (258)
T PRK01033 91 KIFSLGVEKVSINTA-ALEDPDLITEAAERFG-SQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEA-LGAG 167 (258)
T ss_pred HHHHCCCCEEEEChH-HhcCHHHHHHHHHHhC-CCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHH-cCCC
Confidence 344579999988753 2222333444455544 23377888876541 1 1 134567778877755 4667
Q ss_pred EEEECCCCh-----hhHHHHHHHHhhhcCCcEEE
Q 019107 245 AVGINCTSP-----RFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 245 avGvNC~~p-----~~~~~~l~~l~~~~~~pl~v 273 (346)
.+-+..... ..=..+++++.+..+.|+++
T Consensus 168 ~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIa 201 (258)
T PRK01033 168 EILLNSIDRDGTMKGYDLELLKSFRNALKIPLIA 201 (258)
T ss_pred EEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEE
Confidence 776665321 11245667777777788755
No 243
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=65.83 E-value=1.4e+02 Score=29.45 Aligned_cols=97 Identities=16% Similarity=0.207 Sum_probs=59.0
Q ss_pred HHHHHhCCCCEEEEccC-CCH--------------HHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhh
Q 019107 174 VLILANSGADLIAFETI-PNK--------------LEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~-~~~--------------~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~ 238 (346)
++...++|+|.+-+-.- ++. +.++.+++.+++.| . -+.|++.+..+. +-+-+.+.++.+.
T Consensus 81 i~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G--~--~v~~~~ed~~r~-~~~~l~~~~~~~~ 155 (378)
T PRK11858 81 IDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHG--L--YVSFSAEDASRT-DLDFLIEFAKAAE 155 (378)
T ss_pred HHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC--C--eEEEEeccCCCC-CHHHHHHHHHHHH
Confidence 55566789998755432 332 44555677777766 3 355666555443 2233444555544
Q ss_pred cCCCceEEEECCC----ChhhHHHHHHHHhhhcCCcEEEeeC
Q 019107 239 SCEQVVAVGINCT----SPRFIHGLILSVRKVTSKPVIIYPN 276 (346)
Q Consensus 239 ~~~~~~avGvNC~----~p~~~~~~l~~l~~~~~~pl~vypN 276 (346)
+ .+++.|.+-=+ .|+.+..+++.+++..+.|+.+...
T Consensus 156 ~-~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~H 196 (378)
T PRK11858 156 E-AGADRVRFCDTVGILDPFTMYELVKELVEAVDIPIEVHCH 196 (378)
T ss_pred h-CCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 4 35665544322 4999999999998877788887653
No 244
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=65.83 E-value=76 Score=26.61 Aligned_cols=81 Identities=16% Similarity=0.126 Sum_probs=52.9
Q ss_pred CCHHHHHHHhhcCCCceEEEECCC---ChhhHHHHHHHHhhhc--CCcEEEeeCCCCccccccccccccCCCChHHHHHH
Q 019107 228 DSILECASIADSCEQVVAVGINCT---SPRFIHGLILSVRKVT--SKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSY 302 (346)
Q Consensus 228 ~~~~~av~~~~~~~~~~avGvNC~---~p~~~~~~l~~l~~~~--~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~ 302 (346)
.+.++.++.+.+ .++++||+.+- +...+..+++.+++.. +.|+++=-+.. ..+++|.+.
T Consensus 37 v~~e~~v~aa~~-~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~---------------i~~~d~~~~ 100 (128)
T cd02072 37 SPQEEFIDAAIE-TDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLV---------------VGKQDFEDV 100 (128)
T ss_pred CCHHHHHHHHHH-cCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCC---------------CChhhhHHH
Confidence 567788887765 47899999983 4677888888887652 33444421110 235667777
Q ss_pred HHHHHHcCCe-EEeecCCCchHHHH
Q 019107 303 IGKWRDAGAS-LFGGCCRTTPNTIK 326 (346)
Q Consensus 303 ~~~~~~~G~~-ivGGCCGt~P~hI~ 326 (346)
..++.+.|+. ++|= ||.|++|-
T Consensus 101 ~~~L~~~Gv~~vf~p--gt~~~~i~ 123 (128)
T cd02072 101 EKRFKEMGFDRVFAP--GTPPEEAI 123 (128)
T ss_pred HHHHHHcCCCEEECc--CCCHHHHH
Confidence 7888899974 4553 57777764
No 245
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=65.57 E-value=1.2e+02 Score=28.40 Aligned_cols=141 Identities=16% Similarity=0.101 Sum_probs=77.1
Q ss_pred ChHHHHHHHHHHHHhhcceeeccccccCHHhHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCC
Q 019107 53 SPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSR 132 (346)
Q Consensus 53 ~Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~ 132 (346)
|.+.+++.-+.++++|++-|..+-...-.. .++.++-+++.+.+++.+ .++
T Consensus 19 D~~~~~~~i~~l~~~Gv~gl~v~GstGE~~-----~lt~~Er~~l~~~~~~~~------------------------~~~ 69 (284)
T cd00950 19 DFDALERLIEFQIENGTDGLVVCGTTGESP-----TLSDEEHEAVIEAVVEAV------------------------NGR 69 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcchh-----hCCHHHHHHHHHHHHHHh------------------------CCC
Confidence 567777777788899999887662221112 234455556655555432 122
Q ss_pred CcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccC----CCHHHHHHHHHHHHHhCC
Q 019107 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETI----PNKLEAKAYAELLEEEGI 208 (346)
Q Consensus 133 ~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~----~~~~E~~a~~~a~~~~~~ 208 (346)
-.+|+| +|. .+.++.. ++++...+.|+|.+++-.= ++-+|+....+.+.+. .
T Consensus 70 ~~vi~g-v~~------------------~~~~~~~----~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~-~ 125 (284)
T cd00950 70 VPVIAG-TGS------------------NNTAEAI----ELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEA-T 125 (284)
T ss_pred CcEEec-cCC------------------ccHHHHH----HHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhc-C
Confidence 345555 222 1334443 4677788899998876521 2445666655555554 3
Q ss_pred CCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCC
Q 019107 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTS 252 (346)
Q Consensus 209 ~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~ 252 (346)
++|+++--.....+ ..-++. .+..+... +..+|+-.++
T Consensus 126 ~~pi~lYn~P~~~g---~~ls~~-~~~~L~~~--p~v~giK~s~ 163 (284)
T cd00950 126 DLPVILYNVPGRTG---VNIEPE-TVLRLAEH--PNIVGIKEAT 163 (284)
T ss_pred CCCEEEEEChhHhC---CCCCHH-HHHHHhcC--CCEEEEEECC
Confidence 69999543211112 123444 33334332 4577777654
No 246
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=65.56 E-value=1.8e+02 Score=30.53 Aligned_cols=38 Identities=26% Similarity=0.282 Sum_probs=31.0
Q ss_pred HHHHHHHHHHH---hCCCCEEEEccCCCHHHHHHHHHHHHH
Q 019107 168 EFHRRRVLILA---NSGADLIAFETIPNKLEAKAYAELLEE 205 (346)
Q Consensus 168 ~~~~~~i~~l~---~~gvD~i~~ET~~~~~E~~a~~~a~~~ 205 (346)
+.|+.|++++. +.|..-|++=.+.+.+|++.++++++.
T Consensus 367 ~lf~~QlrAI~ra~~~G~~~Im~PmV~t~eE~~~~~~~~~~ 407 (565)
T TIGR01417 367 EILRTQLRAILRASAYGKLRIMFPMVATVEEIRAVKQELEE 407 (565)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHHH
Confidence 56777777764 468899999999999999999888765
No 247
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=65.53 E-value=66 Score=29.56 Aligned_cols=100 Identities=21% Similarity=0.310 Sum_probs=58.5
Q ss_pred HHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEEC--
Q 019107 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGIN-- 249 (346)
Q Consensus 172 ~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvN-- 249 (346)
+|++...++|++|++ -|...+ .+++.+++.+ .|++ +.-.++.|+....+. +.+.|=+-
T Consensus 82 e~a~~a~~aGA~FiV---sP~~~~--~v~~~~~~~~--i~~i-----------PG~~TpsEi~~A~~~--Ga~~vKlFPA 141 (222)
T PRK07114 82 ATAALYIQLGANFIV---TPLFNP--DIAKVCNRRK--VPYS-----------PGCGSLSEIGYAEEL--GCEIVKLFPG 141 (222)
T ss_pred HHHHHHHHcCCCEEE---CCCCCH--HHHHHHHHcC--CCEe-----------CCCCCHHHHHHHHHC--CCCEEEECcc
Confidence 356667889999998 455543 4667777755 8887 223577888887753 44444443
Q ss_pred -CCChhhHHHHHHHHhhhcCCc-EEEeeCCCCccccccccccccCCCCh--HHHHHHHHHHHHcCCeEEee
Q 019107 250 -CTSPRFIHGLILSVRKVTSKP-VIIYPNSGETYNAELKKWVESTGVRD--EDFVSYIGKWRDAGASLFGG 316 (346)
Q Consensus 250 -C~~p~~~~~~l~~l~~~~~~p-l~vypN~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~G~~ivGG 316 (346)
+.+|.+ ++.++.- .| +-+.|-.|. ++ +. +.+|++.|+..+|.
T Consensus 142 ~~~G~~~----ikal~~p--~p~i~~~ptGGV---------------~~~~~n----~~~yl~aGa~avg~ 187 (222)
T PRK07114 142 SVYGPGF----VKAIKGP--MPWTKIMPTGGV---------------EPTEEN----LKKWFGAGVTCVGM 187 (222)
T ss_pred cccCHHH----HHHHhcc--CCCCeEEeCCCC---------------Ccchhc----HHHHHhCCCEEEEE
Confidence 334444 4444421 12 224444442 22 22 34588899988883
No 248
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=65.52 E-value=83 Score=26.56 Aligned_cols=81 Identities=16% Similarity=0.189 Sum_probs=47.8
Q ss_pred CCHHHHHHHhhcCCCceEEEECCC---ChhhHHHHHHHHhhhc--CCcEEEeeCCCCccccccccccccCCCChHHHHHH
Q 019107 228 DSILECASIADSCEQVVAVGINCT---SPRFIHGLILSVRKVT--SKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSY 302 (346)
Q Consensus 228 ~~~~~av~~~~~~~~~~avGvNC~---~p~~~~~~l~~l~~~~--~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~ 302 (346)
.++++.++.+.+ .++++||+..- +...+..+++.+++.. ..++++ .|.. ...++++.+.
T Consensus 39 v~~e~~v~aa~~-~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~viv---GG~~------------vi~~~d~~~~ 102 (134)
T TIGR01501 39 SPQEEFIKAAIE-TKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYV---GGNL------------VVGKQDFPDV 102 (134)
T ss_pred CCHHHHHHHHHH-cCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEe---cCCc------------CcChhhhHHH
Confidence 467777777755 47888888873 4566777777776642 222222 1110 0224556665
Q ss_pred HHHHHHcCC-eEEeecCCCchHHHH
Q 019107 303 IGKWRDAGA-SLFGGCCRTTPNTIK 326 (346)
Q Consensus 303 ~~~~~~~G~-~ivGGCCGt~P~hI~ 326 (346)
..++.+.|+ .++|+ ||.+++|-
T Consensus 103 ~~~l~~~Gv~~vF~p--gt~~~~iv 125 (134)
T TIGR01501 103 EKRFKEMGFDRVFAP--GTPPEVVI 125 (134)
T ss_pred HHHHHHcCCCEEECc--CCCHHHHH
Confidence 566777884 36665 67777663
No 249
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=65.52 E-value=1.1e+02 Score=27.82 Aligned_cols=105 Identities=15% Similarity=0.223 Sum_probs=61.5
Q ss_pred HHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEE---C
Q 019107 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI---N 249 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGv---N 249 (346)
+++...++|+||++ -|... ..+++++++.+ +|++- .-.++.|+....+. +.+.|=+ +
T Consensus 72 ~a~~a~~aGA~Fiv---sP~~~--~~v~~~~~~~~--i~~iP-----------G~~TptEi~~A~~~--Ga~~vKlFPA~ 131 (204)
T TIGR01182 72 QLRQAVDAGAQFIV---SPGLT--PELAKHAQDHG--IPIIP-----------GVATPSEIMLALEL--GITALKLFPAE 131 (204)
T ss_pred HHHHHHHcCCCEEE---CCCCC--HHHHHHHHHcC--CcEEC-----------CCCCHHHHHHHHHC--CCCEEEECCch
Confidence 45667789999997 45553 35677778765 88872 22577888887753 4444433 2
Q ss_pred CCC-hhhHHHHHHHHhhhc-CCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeEEeecCCCch
Q 019107 250 CTS-PRFIHGLILSVRKVT-SKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTP 322 (346)
Q Consensus 250 C~~-p~~~~~~l~~l~~~~-~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivGGCCGt~P 322 (346)
..+ |.++ +.++.-. ..| ++|-.| .++ +.+.+|++.|+..+|+--.-.+
T Consensus 132 ~~GG~~yi----kal~~plp~i~--~~ptGG---------------V~~----~N~~~~l~aGa~~vg~Gs~L~~ 181 (204)
T TIGR01182 132 VSGGVKML----KALAGPFPQVR--FCPTGG---------------INL----ANVRDYLAAPNVACGGGSWLVP 181 (204)
T ss_pred hcCCHHHH----HHHhccCCCCc--EEecCC---------------CCH----HHHHHHHhCCCEEEEEChhhcC
Confidence 332 5544 4443211 223 335554 233 3456699999988887444433
No 250
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=65.41 E-value=47 Score=30.19 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHhhcceeecc
Q 019107 54 PHLVRKVHLDYLDAGANIIITA 75 (346)
Q Consensus 54 Pe~V~~iH~~yl~AGA~iI~Tn 75 (346)
++.+.+.-+.+.++|||+|-|+
T Consensus 142 ~~~i~~~~~~a~~~GaD~Ik~~ 163 (235)
T cd00958 142 PDLIAYAARIGAELGADIVKTK 163 (235)
T ss_pred HHHHHHHHHHHHHHCCCEEEec
Confidence 4555554555666777777764
No 251
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=65.38 E-value=12 Score=35.22 Aligned_cols=45 Identities=31% Similarity=0.347 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEE
Q 019107 162 SLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAW 213 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~ 213 (346)
+.+++ +--.++++.+.++|+|.+++|-+|+ ++++.+.+.+ ++|++
T Consensus 153 t~~~a-~~~i~ra~a~~~AGA~~i~lE~v~~-~~~~~i~~~v-----~iP~i 197 (254)
T cd06557 153 TEEEA-ERLLEDALALEEAGAFALVLECVPA-ELAKEITEAL-----SIPTI 197 (254)
T ss_pred CHHHH-HHHHHHHHHHHHCCCCEEEEcCCCH-HHHHHHHHhC-----CCCEE
Confidence 33334 3444678899999999999999985 5655555432 37776
No 252
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=65.12 E-value=1.2e+02 Score=28.45 Aligned_cols=99 Identities=18% Similarity=0.173 Sum_probs=63.4
Q ss_pred ccCCCCHHHHHHHhhcCCCceEEEECCCChhhHHHHHHHHhhhcCCc--EEEeeCCCCccccccccccc--------c--
Q 019107 224 VVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKP--VIIYPNSGETYNAELKKWVE--------S-- 291 (346)
Q Consensus 224 l~~G~~~~~av~~~~~~~~~~avGvNC~~p~~~~~~l~~l~~~~~~p--l~vypN~g~~~~~~~~~~~~--------~-- 291 (346)
+.||..+.++...+.+ |++..+.+..+++++++..+.| ++.|-|--.-|.- ..|.. .
T Consensus 56 ~aDGpvIq~a~~rAL~---------~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~--e~F~~~~~~aGvdgvi 124 (263)
T CHL00200 56 LADGPIIQEASNRALK---------QGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHYGI--NKFIKKISQAGVKGLI 124 (263)
T ss_pred CccCHHHHHHHHHHHH---------cCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhCH--HHHHHHHHHcCCeEEE
Confidence 3589888887665432 3445778888888888666677 4567674211110 01110 0
Q ss_pred -CCCChHHHHHHHHHHHHcCCeEEeecCCCch-HHHHHHHHHHc
Q 019107 292 -TGVRDEDFVSYIGKWRDAGASLFGGCCRTTP-NTIKAISRVLS 333 (346)
Q Consensus 292 -~~~~~~~~~~~~~~~~~~G~~ivGGCCGt~P-~hI~al~~~~~ 333 (346)
..+.+++-.++...+.+.|...|=-+.-||| +.|+.|++..+
T Consensus 125 ipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~ 168 (263)
T CHL00200 125 IPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAP 168 (263)
T ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCC
Confidence 1144566777777888899888888887775 78888887755
No 253
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=65.04 E-value=1.3e+02 Score=28.68 Aligned_cols=115 Identities=17% Similarity=0.200 Sum_probs=63.0
Q ss_pred CcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEc---------cCCCHHHHHH---HH
Q 019107 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFE---------TIPNKLEAKA---YA 200 (346)
Q Consensus 133 ~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~E---------T~~~~~E~~a---~~ 200 (346)
+..|-|-+==+.+...||..| .+.+.+.+ +++.+.+.|+|+|=+- -++.-+|++- ++
T Consensus 14 ~~~imGIlNvTpDSFsdgg~~-------~~~~~a~~----~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI 82 (282)
T PRK11613 14 HPHVMGILNVTPDSFSDGGTH-------NSLIDAVK----HANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVV 82 (282)
T ss_pred CceEEEEEcCCCCCCCCCCCC-------CCHHHHHH----HHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 456777776666777776433 25566555 6677788999999665 2333347544 44
Q ss_pred HHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCC----ChhhHHHHHHHHhhhcCCcEEEeeC
Q 019107 201 ELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT----SPRFIHGLILSVRKVTSKPVIIYPN 276 (346)
Q Consensus 201 ~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~----~p~~~~~~l~~l~~~~~~pl~vypN 276 (346)
+.+++. ..+.||+- -... ++++.+.. .|++.| |=. .| .+..+ +.+ ...|+++.++
T Consensus 83 ~~l~~~---~~~~ISID---------T~~~-~va~~AL~-~GadiI--NDI~g~~d~-~~~~~---~a~-~~~~vVlmh~ 141 (282)
T PRK11613 83 EAIAQR---FEVWISVD---------TSKP-EVIRESAK-AGAHII--NDIRSLSEP-GALEA---AAE-TGLPVCLMHM 141 (282)
T ss_pred HHHHhc---CCCeEEEE---------CCCH-HHHHHHHH-cCCCEE--EECCCCCCH-HHHHH---HHH-cCCCEEEEcC
Confidence 555542 23446662 2222 33433323 255543 322 33 33333 333 3689999998
Q ss_pred CCC
Q 019107 277 SGE 279 (346)
Q Consensus 277 ~g~ 279 (346)
.|.
T Consensus 142 ~g~ 144 (282)
T PRK11613 142 QGN 144 (282)
T ss_pred CCC
Confidence 764
No 254
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=64.77 E-value=55 Score=31.15 Aligned_cols=65 Identities=9% Similarity=0.055 Sum_probs=44.1
Q ss_pred HHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECC
Q 019107 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC 250 (346)
|++...++|+|+|++..| ++++++.+++.+++.. ..+.+..+ .|-++..+..... .+++.+-+-.
T Consensus 200 ea~ea~~~GaDiI~lDn~-~~e~l~~~v~~l~~~~--~~~~leas--------GGI~~~ni~~ya~--~GvD~is~ga 264 (277)
T TIGR01334 200 QALTVLQASPDILQLDKF-TPQQLHHLHERLKFFD--HIPTLAAA--------GGINPENIADYIE--AGIDLFITSA 264 (277)
T ss_pred HHHHHHHcCcCEEEECCC-CHHHHHHHHHHHhccC--CCEEEEEE--------CCCCHHHHHHHHh--cCCCEEEeCc
Confidence 344456789999999986 7888888888776533 34555553 5677777777664 4677664443
No 255
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=64.25 E-value=14 Score=34.31 Aligned_cols=53 Identities=26% Similarity=0.330 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHH-------HHH-HH----HHHHHHhCCCCcEEEEE
Q 019107 162 SLETLKEFHRRRVLILANSGADLIAFETIPNKL-------EAK-AY----AELLEEEGITIPAWFSF 216 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~-------E~~-a~----~~a~~~~~~~~pv~is~ 216 (346)
+.+++.+.-.+-+..|.++|+|.+++|.+.+.- |-. +. .+..++. ++|+=|.+
T Consensus 28 ~~~~vid~A~~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v--~iPvGvNV 92 (263)
T COG0434 28 SLEAVIDRAVRDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREV--SIPVGVNV 92 (263)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHhc--cccceeee
Confidence 788999888888899999999999999876431 212 11 2334443 48888777
No 256
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=64.09 E-value=13 Score=35.19 Aligned_cols=47 Identities=26% Similarity=0.311 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEE
Q 019107 162 SLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSF 216 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~ 216 (346)
+.+++.+ -.++++.+.++|+|.|++|-+|+ ++++.+.+.+ +.|++ .+
T Consensus 156 t~~~a~~-~i~ra~a~~eAGA~~i~lE~v~~-~~~~~i~~~l-----~iP~i-gi 202 (264)
T PRK00311 156 DEEAAEK-LLEDAKALEEAGAFALVLECVPA-ELAKEITEAL-----SIPTI-GI 202 (264)
T ss_pred CHHHHHH-HHHHHHHHHHCCCCEEEEcCCCH-HHHHHHHHhC-----CCCEE-Ee
Confidence 4444433 44678899999999999999977 5666555532 37776 44
No 257
>PRK08227 autoinducer 2 aldolase; Validated
Probab=64.01 E-value=1.3e+02 Score=28.38 Aligned_cols=116 Identities=15% Similarity=0.111 Sum_probs=66.8
Q ss_pred HHhCCCCEEEEccCC-CHHHHHH------HHHHHHHhCCCCcEEEEEEEcCCCcccCCC-CHHHHHHHhhcCCCceEEEE
Q 019107 177 LANSGADLIAFETIP-NKLEAKA------YAELLEEEGITIPAWFSFNSKDGINVVSGD-SILECASIADSCEQVVAVGI 248 (346)
Q Consensus 177 l~~~gvD~i~~ET~~-~~~E~~a------~~~a~~~~~~~~pv~is~~~~~~~~l~~G~-~~~~av~~~~~~~~~~avGv 248 (346)
.++-|+|.+.+=.++ +..|.+. +++.+.+.| +|+++ +..+ .....++. -+.-+++... ..|++.|=+
T Consensus 103 AvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G--~Plla-~~pr-G~~~~~~~~~ia~aaRiaa-ELGADiVK~ 177 (264)
T PRK08227 103 AVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYG--MPVMA-VTAV-GKDMVRDARYFSLATRIAA-EMGAQIIKT 177 (264)
T ss_pred HHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhC--CcEEE-EecC-CCCcCchHHHHHHHHHHHH-HHcCCEEec
Confidence 445789998765544 4444443 344455555 99988 4432 22232322 2334444433 368999999
Q ss_pred CCCChhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeEEeecCC
Q 019107 249 NCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCR 319 (346)
Q Consensus 249 NC~~p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivGGCCG 319 (346)
+-+. +.+..+ -+....|+++- |.. . .+.++|.+.+.+.++.|+ .|=|-|
T Consensus 178 ~y~~-~~f~~v----v~a~~vPVvia---GG~-----------k-~~~~~~L~~v~~ai~aGa--~Gv~~G 226 (264)
T PRK08227 178 YYVE-EGFERI----TAGCPVPIVIA---GGK-----------K-LPERDALEMCYQAIDEGA--SGVDMG 226 (264)
T ss_pred CCCH-HHHHHH----HHcCCCcEEEe---CCC-----------C-CCHHHHHHHHHHHHHcCC--ceeeec
Confidence 9874 333333 33456787763 210 1 235779999999998887 454555
No 258
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=63.97 E-value=31 Score=27.36 Aligned_cols=45 Identities=18% Similarity=0.201 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCCCEEEEcc--CCCHHHHHHHHHHHHHhCCCCcEEEEE
Q 019107 169 FHRRRVLILANSGADLIAFET--IPNKLEAKAYAELLEEEGITIPAWFSF 216 (346)
Q Consensus 169 ~~~~~i~~l~~~gvD~i~~ET--~~~~~E~~a~~~a~~~~~~~~pv~is~ 216 (346)
.|.+.+..+++.|. -+++|- ..+++|++.+++++++.+ ++++|.|
T Consensus 74 ~h~~~~~~~l~~g~-~v~~EKP~~~~~~~~~~l~~~a~~~~--~~~~Vg~ 120 (120)
T PF01408_consen 74 SHAEIAKKALEAGK-HVLVEKPLALTLEEAEELVEAAKEKG--VKVMVGY 120 (120)
T ss_dssp GHHHHHHHHHHTTS-EEEEESSSSSSHHHHHHHHHHHHHHT--SCEEEE-
T ss_pred chHHHHHHHHHcCC-EEEEEcCCcCCHHHHHHHHHHHHHhC--CEEEEeC
Confidence 46677777777777 444573 457888888888888766 6676653
No 259
>PRK15452 putative protease; Provisional
Probab=63.77 E-value=1e+02 Score=31.40 Aligned_cols=109 Identities=14% Similarity=0.182 Sum_probs=62.4
Q ss_pred CCChHHHHHHHHHHHHhhcceeec--cccccCHHhHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCC
Q 019107 51 VSSPHLVRKVHLDYLDAGANIIIT--ASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGR 128 (346)
Q Consensus 51 l~~Pe~V~~iH~~yl~AGA~iI~T--nTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~ 128 (346)
..+++.++.+ +++|||.|.- ..|.... ....++.+ -++.++++|++.
T Consensus 10 ag~~e~l~aA----i~~GADaVY~G~~~~~~R~---~~~~f~~e----dl~eav~~ah~~-------------------- 58 (443)
T PRK15452 10 AGTLKNMRYA----FAYGADAVYAGQPRYSLRV---RNNEFNHE----NLALGINEAHAL-------------------- 58 (443)
T ss_pred CCCHHHHHHH----HHCCCCEEEECCCccchhh---hccCCCHH----HHHHHHHHHHHc--------------------
Confidence 4677776654 6899997764 3344321 11234432 255567776532
Q ss_pred CCCCCcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCC
Q 019107 129 ISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGI 208 (346)
Q Consensus 129 ~~~~~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~ 208 (346)
+.+++|+--.=| ..+++ +.+.+.++.+.+.|||.|++ .++-.+ ..+++...
T Consensus 59 --g~kvyvt~n~i~-------------------~e~el-~~~~~~l~~l~~~gvDgvIV---~d~G~l----~~~ke~~p 109 (443)
T PRK15452 59 --GKKFYVVVNIAP-------------------HNAKL-KTFIRDLEPVIAMKPDALIM---SDPGLI----MMVREHFP 109 (443)
T ss_pred --CCEEEEEecCcC-------------------CHHHH-HHHHHHHHHHHhCCCCEEEE---cCHHHH----HHHHHhCC
Confidence 346777652111 11233 33444577788899999984 555443 45555434
Q ss_pred CCcEEEEEEEc
Q 019107 209 TIPAWFSFNSK 219 (346)
Q Consensus 209 ~~pv~is~~~~ 219 (346)
++|+++|+...
T Consensus 110 ~l~ih~stqln 120 (443)
T PRK15452 110 EMPIHLSVQAN 120 (443)
T ss_pred CCeEEEEeccc
Confidence 68999998653
No 260
>PRK00915 2-isopropylmalate synthase; Validated
Probab=63.72 E-value=1.9e+02 Score=30.01 Aligned_cols=55 Identities=22% Similarity=0.221 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhCCCCEEEE-ccC--CCHHHHHHHHHHHHHhCCC-CcEEEEEEEcCCC
Q 019107 168 EFHRRRVLILANSGADLIAF-ETI--PNKLEAKAYAELLEEEGIT-IPAWFSFNSKDGI 222 (346)
Q Consensus 168 ~~~~~~i~~l~~~gvD~i~~-ET~--~~~~E~~a~~~a~~~~~~~-~pv~is~~~~~~~ 222 (346)
++..+.++.+.+.|+|.|.+ -|+ ..+.+...+++.+++.-.+ ..+.++|.+.++.
T Consensus 149 ~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~ 207 (513)
T PRK00915 149 DFLCRVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDL 207 (513)
T ss_pred HHHHHHHHHHHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCcccceEEEEecCCC
Confidence 34445566677889998854 343 3677888889888863101 1277899998764
No 261
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=63.67 E-value=1e+02 Score=26.98 Aligned_cols=110 Identities=14% Similarity=0.123 Sum_probs=64.4
Q ss_pred HHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEE-EEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCC
Q 019107 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFS-FNSKDGINVVSGDSILECASIADSCEQVVAVGINCT 251 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is-~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~ 251 (346)
.++.+.++|+|++.+=..+...++..+++.+++.+ +++.+. +++ .+..++...+ . .+++.++++=.
T Consensus 69 ~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g--~~~~v~~~~~---------~t~~e~~~~~-~-~~~d~v~~~~~ 135 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYG--KEVQVDLIGV---------EDPEKRAKLL-K-LGVDIVILHRG 135 (202)
T ss_pred HHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcC--CeEEEEEeCC---------CCHHHHHHHH-H-CCCCEEEEcCc
Confidence 34667889999999766555566777888888866 777765 432 1345555533 3 35677777421
Q ss_pred -C-----hhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeEEee
Q 019107 252 -S-----PRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGG 316 (346)
Q Consensus 252 -~-----p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivGG 316 (346)
. .......++++++..+.|+.+- .| .+++ .++++.+.|+..++.
T Consensus 136 ~~~~~~~~~~~~~~i~~~~~~~~~~i~~~--GG---------------I~~~----~i~~~~~~Gad~vvv 185 (202)
T cd04726 136 IDAQAAGGWWPEDDLKKVKKLLGVKVAVA--GG---------------ITPD----TLPEFKKAGADIVIV 185 (202)
T ss_pred ccccccCCCCCHHHHHHHHhhcCCCEEEE--CC---------------cCHH----HHHHHHhcCCCEEEE
Confidence 1 1223445555554334554432 22 2333 355688888876554
No 262
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=63.66 E-value=41 Score=32.33 Aligned_cols=62 Identities=11% Similarity=0.167 Sum_probs=44.2
Q ss_pred HHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECC
Q 019107 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC 250 (346)
++...+++|+|+|++.+|+ ++|++.+++..+. .+.+..+ .|-++..+.+.+. .+++.|.+-+
T Consensus 220 ea~ea~~~gaDiI~LDn~s-~e~~~~av~~~~~-----~~~ieaS--------GGI~~~ni~~yA~--tGVD~Is~ga 281 (296)
T PRK09016 220 ELDQALKAGADIIMLDNFT-TEQMREAVKRTNG-----RALLEVS--------GNVTLETLREFAE--TGVDFISVGA 281 (296)
T ss_pred HHHHHHHcCCCEEEeCCCC-hHHHHHHHHhhcC-----CeEEEEE--------CCCCHHHHHHHHh--cCCCEEEeCc
Confidence 3444666999999999985 7899988885532 3444442 4677777777664 5889888877
No 263
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=63.66 E-value=83 Score=28.82 Aligned_cols=95 Identities=13% Similarity=-0.022 Sum_probs=58.7
Q ss_pred HHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcc---cCCCCHHHHHHHhhcCCCceEEEEC
Q 019107 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINV---VSGDSILECASIADSCEQVVAVGIN 249 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l---~~G~~~~~av~~~~~~~~~~avGvN 249 (346)
+++.+...|+|-+++-|.. ... ..+.+++++++ +-.+++|+.+++. .. .++.++.+.++.+... +..+-++
T Consensus 92 dv~~~l~~Ga~~viigt~~-~~~-~~~~~~~~~~~-~~~iivslD~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~li~~ 165 (233)
T cd04723 92 NAQEWLKRGASRVIVGTET-LPS-DDDEDRLAALG-EQRLVLSLDFRGG-QLLKPTDFIGPEELLRRLAKW--PEELIVL 165 (233)
T ss_pred HHHHHHHcCCCeEEEccee-ccc-hHHHHHHHhcC-CCCeEEEEeccCC-eeccccCcCCHHHHHHHHHHh--CCeEEEE
Confidence 4555667899998887654 333 56667777776 2379999988654 32 4677888888887653 3333332
Q ss_pred CC---C--hhhHHHHHHHHhhhcCCcEEE
Q 019107 250 CT---S--PRFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 250 C~---~--p~~~~~~l~~l~~~~~~pl~v 273 (346)
-. + -..-..+++.+.+....|+.+
T Consensus 166 di~~~G~~~g~~~~~~~~i~~~~~ipvi~ 194 (233)
T cd04723 166 DIDRVGSGQGPDLELLERLAARADIPVIA 194 (233)
T ss_pred EcCccccCCCcCHHHHHHHHHhcCCCEEE
Confidence 22 1 011235566666666778765
No 264
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=63.46 E-value=1.4e+02 Score=28.55 Aligned_cols=155 Identities=19% Similarity=0.166 Sum_probs=74.6
Q ss_pred cCCChHHH-----------HHHHHHHHHhhcceeeccccccCHHhHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 019107 50 LVSSPHLV-----------RKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMK 118 (346)
Q Consensus 50 ll~~Pe~V-----------~~iH~~yl~AGA~iI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~ 118 (346)
+.++||.| .+..+.++++|+|+|.... .+..- ++++..+++..-..+-..+++...
T Consensus 166 ~~~~Pe~v~~ll~~~~~~~~~~~~~~~~~G~d~i~~~d--~~~~~-----isp~~f~e~~~P~~k~i~~~i~~~------ 232 (343)
T PF01208_consen 166 LYDDPEKVHELLDKITDFIIEYAKAQIEAGADGIFIFD--SSGSL-----ISPEMFEEFILPYLKKIIDAIKEA------ 232 (343)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEE--TTGGG-----S-HHHHHHHTHHHHHHHHHHHHHH------
T ss_pred HHhCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccccc--cccCC-----CCHHHHHHHHHHHHHHHHHHHHHh------
Confidence 45788754 3456678899999987776 33222 345556665555444444443322
Q ss_pred CCCCCCCCCCCCCCCcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHH
Q 019107 119 DSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKA 198 (346)
Q Consensus 119 ~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a 198 (346)
+....+.=+.|-. ...++.+.+.|+|.+-++.-.++.|++
T Consensus 233 ------------g~~~~~lH~cG~~---------------------------~~~~~~l~~~g~d~~~~~~~~~~~~~~- 272 (343)
T PF01208_consen 233 ------------GKDPVILHICGNT---------------------------TPILDDLADLGADVLSVDEKVDLAEAK- 272 (343)
T ss_dssp ------------ETE-EEEEETTHG----------------------------GGHHHHHTSS-SEEEE-TTS-HHHHH-
T ss_pred ------------CCCceEEEECCch---------------------------HHHHHHHHhcCCCEEEEcCCCCHHHHH-
Confidence 1102233333221 113556777999999998777775543
Q ss_pred HHHHHHHhCCCCcEEEEEEEcCCCcccCCC--CHHHHHHHh-hc---CCCceEEEECCC-----ChhhHHHHHHHHhh
Q 019107 199 YAELLEEEGITIPAWFSFNSKDGINVVSGD--SILECASIA-DS---CEQVVAVGINCT-----SPRFIHGLILSVRK 265 (346)
Q Consensus 199 ~~~a~~~~~~~~pv~is~~~~~~~~l~~G~--~~~~av~~~-~~---~~~~~avGvNC~-----~p~~~~~~l~~l~~ 265 (346)
++.+.+..++=.+ +....|. |+ .+.+.++.+ +. ..+-..++..|. +++.+..+++..++
T Consensus 273 -----~~~~~~~~l~Gni--~~~~~l~-gt~eei~~~v~~~i~~~~~~~~gfIl~~gc~ip~~~p~eni~a~~~a~~e 342 (343)
T PF01208_consen 273 -----RKLGDKIVLMGNI--DPVSLLF-GTPEEIEEEVKRLIEEGLAGGGGFILSPGCGIPPDTPPENIKAMVEAVKE 342 (343)
T ss_dssp -----HHHTTSSEEEEEB---G-GGGG-S-HHHHHHHHHHHHHHTHCTSSSEEBEBSS---TTS-HHHHHHHHHHHHH
T ss_pred -----HHhCCCeEEECCC--Ccccccc-CCHHHHHHHHHHHHHHhcCCCCCEEEeCCCcCCCCcCHHHHHHHHHHHHh
Confidence 3544234444333 3323444 42 333333322 21 123456777784 24666666665543
No 265
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=63.14 E-value=66 Score=29.93 Aligned_cols=94 Identities=18% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHH--------------------HHHHHHhCCCCcEEEEEEEcCCCcccC
Q 019107 167 KEFHRRRVLILANSGADLIAFETIPNKLEAKAY--------------------AELLEEEGITIPAWFSFNSKDGINVVS 226 (346)
Q Consensus 167 ~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~--------------------~~a~~~~~~~~pv~is~~~~~~~~l~~ 226 (346)
.++|++..+...+.|+|++. |..+.+.+..+ ++.+.+++ +|+++|. .
T Consensus 55 ~e~~~~L~~~~~~~gi~f~s--tpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tg--kPvIlST---------G 121 (241)
T PF03102_consen 55 EEQHKELFEYCKELGIDFFS--TPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTG--KPVILST---------G 121 (241)
T ss_dssp HHHHHHHHHHHHHTT-EEEE--EE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT---S-EEEE----------T
T ss_pred HHHHHHHHHHHHHcCCEEEE--CCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhC--CcEEEEC---------C
Q ss_pred CCCHHHHHHHhhcC---CCceEEEECCCC-----hhhH-HHHHHHHhhhcCCcEEE
Q 019107 227 GDSILECASIADSC---EQVVAVGINCTS-----PRFI-HGLILSVRKVTSKPVII 273 (346)
Q Consensus 227 G~~~~~av~~~~~~---~~~~avGvNC~~-----p~~~-~~~l~~l~~~~~~pl~v 273 (346)
+.++.++-+.++-. .....+.+=|++ |+.+ +..+..|++....|++.
T Consensus 122 ~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~~~vG~ 177 (241)
T PF03102_consen 122 MSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFGVPVGY 177 (241)
T ss_dssp T--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHSTSEEEE
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcCCCEEe
No 266
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=63.13 E-value=1.1e+02 Score=29.30 Aligned_cols=63 Identities=17% Similarity=0.140 Sum_probs=37.8
Q ss_pred HHHHHHHHHhCCCCEEEEccC-CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEE
Q 019107 170 HRRRVLILANSGADLIAFETI-PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI 248 (346)
Q Consensus 170 ~~~~i~~l~~~gvD~i~~ET~-~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGv 248 (346)
|..-++.|.+.|||+|- ||- +.+ +...+...|+.- +.|++.-. .++.++.+..+ .|++.||-
T Consensus 76 ~~~Ea~~L~eaGvDiID-aT~r~rP--~~~~~~~iK~~~-~~l~MAD~-----------stleEal~a~~--~Gad~I~T 138 (283)
T cd04727 76 HFVEAQILEALGVDMID-ESEVLTP--ADEEHHIDKHKF-KVPFVCGA-----------RNLGEALRRIS--EGAAMIRT 138 (283)
T ss_pred HHHHHHHHHHcCCCEEe-ccCCCCc--HHHHHHHHHHHc-CCcEEccC-----------CCHHHHHHHHH--CCCCEEEe
Confidence 44557889999999995 876 344 344555555532 47777433 45666666554 24455444
Q ss_pred C
Q 019107 249 N 249 (346)
Q Consensus 249 N 249 (346)
-
T Consensus 139 T 139 (283)
T cd04727 139 K 139 (283)
T ss_pred c
Confidence 3
No 267
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=63.12 E-value=1.1e+02 Score=28.56 Aligned_cols=101 Identities=18% Similarity=0.203 Sum_probs=71.6
Q ss_pred HHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcC--------------CCcccCCCCHHHHHHHhhcCC
Q 019107 176 ILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKD--------------GINVVSGDSILECASIADSCE 241 (346)
Q Consensus 176 ~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~--------------~~~l~~G~~~~~av~~~~~~~ 241 (346)
.+..+|+|-+-+.| +-+.....+-++++++| .--+++++.+.. .++-..|.+..+-+..+.. .
T Consensus 91 ~ll~aGADKVSINs-aAv~~p~lI~~~a~~FG-sQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~-~ 167 (256)
T COG0107 91 KLLRAGADKVSINS-AAVKDPELITEAADRFG-SQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEE-L 167 (256)
T ss_pred HHHHcCCCeeeeCh-hHhcChHHHHHHHHHhC-CceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHH-c
Confidence 46669999999887 45666677788888888 566777776533 1233455666666666655 4
Q ss_pred CceEEEECCCC-----hhhHHHHHHHHhhhcCCcEEEeeCCCC
Q 019107 242 QVVAVGINCTS-----PRFIHGLILSVRKVTSKPVIIYPNSGE 279 (346)
Q Consensus 242 ~~~avGvNC~~-----p~~~~~~l~~l~~~~~~pl~vypN~g~ 279 (346)
++-=|.+||.. --+=.++++.+++..+.|+++.--+|.
T Consensus 168 GAGEIlLtsmD~DGtk~GyDl~l~~~v~~~v~iPvIASGGaG~ 210 (256)
T COG0107 168 GAGEILLTSMDRDGTKAGYDLELTRAVREAVNIPVIASGGAGK 210 (256)
T ss_pred CCceEEEeeecccccccCcCHHHHHHHHHhCCCCEEecCCCCc
Confidence 77779999963 234467888998888999998766663
No 268
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=63.08 E-value=1.3e+02 Score=28.12 Aligned_cols=67 Identities=12% Similarity=0.175 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEc-cC--CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhh
Q 019107 162 SLETLKEFHRRRVLILANSGADLIAFE-TI--PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~~~gvD~i~~E-T~--~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~ 238 (346)
+.+.+.+ .++.+.+.|+|-|.+- |+ -++.++..++..+++. .|+-+.|.+.++. |..++.++..+.
T Consensus 139 ~~~~l~~----~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~---~~~~i~~H~Hn~~----Gla~an~~~a~~ 207 (262)
T cd07948 139 DLVDLLR----VYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGV---VSCDIEFHGHNDT----GCAIANAYAALE 207 (262)
T ss_pred CHHHHHH----HHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHh---cCCeEEEEECCCC----ChHHHHHHHHHH
Confidence 3455544 4555667899887654 44 3677888888888874 3355677777765 556677776665
Q ss_pred c
Q 019107 239 S 239 (346)
Q Consensus 239 ~ 239 (346)
.
T Consensus 208 a 208 (262)
T cd07948 208 A 208 (262)
T ss_pred h
Confidence 3
No 269
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=62.94 E-value=1.6e+02 Score=28.96 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCCEEEE-ccCC--CHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHh
Q 019107 169 FHRRRVLILANSGADLIAF-ETIP--NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIA 237 (346)
Q Consensus 169 ~~~~~i~~l~~~gvD~i~~-ET~~--~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~ 237 (346)
++.+.++.+.+.|+|-|.+ -|+. .+.++..+++.+++. .|+-+.|.+.++. |..++.++..+
T Consensus 142 ~l~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~---~~~~l~~H~Hnd~----GlA~AN~laA~ 206 (363)
T TIGR02090 142 FLIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKEN---VKLPISVHCHNDF----GLATANSIAGV 206 (363)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcc---cCceEEEEecCCC----ChHHHHHHHHH
Confidence 3444556677789998754 4544 577888888888763 3456778887764 33344444444
No 270
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=62.89 E-value=1.4e+02 Score=28.24 Aligned_cols=68 Identities=10% Similarity=0.112 Sum_probs=41.6
Q ss_pred HHHHHHHhC--CCCEEEEcc------------CCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHh
Q 019107 172 RRVLILANS--GADLIAFET------------IPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIA 237 (346)
Q Consensus 172 ~~i~~l~~~--gvD~i~~ET------------~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~ 237 (346)
+.++.+.++ ++|.|-+-. ..+.+.+..+++++++.- ++|+++-+.. +-++..+.++.+
T Consensus 107 ~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~-~~pv~vKi~~-------~~~~~~~~a~~l 178 (300)
T TIGR01037 107 EVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT-DVPVFAKLSP-------NVTDITEIAKAA 178 (300)
T ss_pred HHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEECCC-------ChhhHHHHHHHH
Confidence 355556554 388886641 235567777888888753 5899887742 112345566656
Q ss_pred hcCCCceEEEE
Q 019107 238 DSCEQVVAVGI 248 (346)
Q Consensus 238 ~~~~~~~avGv 248 (346)
.+ .++++|-+
T Consensus 179 ~~-~G~d~i~v 188 (300)
T TIGR01037 179 EE-AGADGLTL 188 (300)
T ss_pred HH-cCCCEEEE
Confidence 54 47787764
No 271
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=62.68 E-value=30 Score=34.14 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=41.0
Q ss_pred CCCcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccC-CCHHHHHHHHHHHHHhCCC
Q 019107 131 SRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETI-PNKLEAKAYAELLEEEGIT 209 (346)
Q Consensus 131 ~~~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~-~~~~E~~a~~~a~~~~~~~ 209 (346)
+.+.+|+.++||... +.++++.|.++|+|+|++-+- -+-+.....++.+++.-.+
T Consensus 94 ~~~l~V~aavg~~~~------------------------~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~ 149 (352)
T PF00478_consen 94 KGRLLVAAAVGTRDD------------------------DFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPD 149 (352)
T ss_dssp TSCBCEEEEEESSTC------------------------HHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTT
T ss_pred cccceEEEEecCCHH------------------------HHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCC
Confidence 347899999999631 245788899999999999843 3444444555666664436
Q ss_pred CcEEEEE
Q 019107 210 IPAWFSF 216 (346)
Q Consensus 210 ~pv~is~ 216 (346)
.||++-=
T Consensus 150 ~~viaGN 156 (352)
T PF00478_consen 150 VPVIAGN 156 (352)
T ss_dssp SEEEEEE
T ss_pred ceEEecc
Confidence 8888543
No 272
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=62.26 E-value=1.7e+02 Score=28.99 Aligned_cols=153 Identities=16% Similarity=0.191 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCC------------------CHHHHHHHHHHHHHhCC
Q 019107 147 LADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIP------------------NKLEAKAYAELLEEEGI 208 (346)
Q Consensus 147 l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~------------------~~~E~~a~~~a~~~~~~ 208 (346)
+++..+|+.. .+...-+...++|+++++ .|+-+++.|+.. .+...+-+.+++++.|
T Consensus 23 maPm~~~~a~-~dG~pt~~~~~yy~~RA~----gG~Glii~~~~~v~~~g~~~~~~~~l~~d~~i~~~~~vt~avH~~G- 96 (363)
T COG1902 23 MAPMTRNRAT-PDGLPTDLLAEYYAERAK----GGAGLIITEATAVDPGGRGYPGQPGLWSDAQIPGLKRLTEAVHAHG- 96 (363)
T ss_pred ecCccccccc-CCCCCCHHHHHHHHHHhc----CCCCEEEEeeEeeCcccccCCCCCccCChhHhHHHHHHHHHHHhcC-
Q ss_pred CCcEEEEEEEcC---------------------------CCcccCCCCHHHHHHHhhcC------CCceEEEECCCChhh
Q 019107 209 TIPAWFSFNSKD---------------------------GINVVSGDSILECASIADSC------EQVVAVGINCTSPRF 255 (346)
Q Consensus 209 ~~pv~is~~~~~---------------------------~~~l~~G~~~~~av~~~~~~------~~~~avGvNC~~p~~ 255 (346)
.++|+.+.=.. ..+-++-+.+.++++....+ .|.|+|=|-++|-..
T Consensus 97 -~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYL 175 (363)
T COG1902 97 -AKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARRAKEAGFDGVEIHGAHGYL 175 (363)
T ss_pred -CeEEEEeccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchH
Q ss_pred HHHHHHHHhhh----------------------------cCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHH
Q 019107 256 IHGLILSVRKV----------------------------TSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWR 307 (346)
Q Consensus 256 ~~~~l~~l~~~----------------------------~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (346)
+.+.|....+. .+.|+++.-|.. +|....+.+.+++.+.++.+.
T Consensus 176 i~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~--------d~~~~~g~~~~e~~~la~~L~ 247 (363)
T COG1902 176 LSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPD--------DFFDGGGLTIEEAVELAKALE 247 (363)
T ss_pred HHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECcc--------ccCCCCCCCHHHHHHHHHHHH
Q ss_pred HcC-CeEE
Q 019107 308 DAG-ASLF 314 (346)
Q Consensus 308 ~~G-~~iv 314 (346)
+.| +.++
T Consensus 248 ~~G~~d~i 255 (363)
T COG1902 248 EAGLVDYI 255 (363)
T ss_pred hcCCccEE
No 273
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=61.86 E-value=47 Score=33.16 Aligned_cols=73 Identities=14% Similarity=0.191 Sum_probs=47.5
Q ss_pred HHHHHHHHhCCCCEEEEcc-C--------------CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHH
Q 019107 171 RRRVLILANSGADLIAFET-I--------------PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECAS 235 (346)
Q Consensus 171 ~~~i~~l~~~gvD~i~~ET-~--------------~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~ 235 (346)
.+.++.+.+.|+|.|-+-. . .+++-+..+++++++.. ++|+|+-++. +-+++.+.++
T Consensus 130 ~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~-~iPv~vKLsP-------n~t~i~~ia~ 201 (385)
T PLN02495 130 EEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKA-TVPVWAKMTP-------NITDITQPAR 201 (385)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhh-cCceEEEeCC-------ChhhHHHHHH
Confidence 3345556678999996642 1 24456677778887764 6999999974 2234777777
Q ss_pred HhhcCCCceE-EEECCCC
Q 019107 236 IADSCEQVVA-VGINCTS 252 (346)
Q Consensus 236 ~~~~~~~~~a-vGvNC~~ 252 (346)
.+.. .++++ +.+|-..
T Consensus 202 aa~~-~Gadgi~liNT~~ 218 (385)
T PLN02495 202 VALK-SGCEGVAAINTIM 218 (385)
T ss_pred HHHH-hCCCEEEEecccC
Confidence 6655 36676 4557653
No 274
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=61.57 E-value=1.1e+02 Score=27.57 Aligned_cols=107 Identities=19% Similarity=0.159 Sum_probs=59.4
Q ss_pred HHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCC
Q 019107 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT 251 (346)
Q Consensus 172 ~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~ 251 (346)
+|++...++|++|++ -|...+ .+++.+++.+ +|++-.. .++.|+....+ .+.+.+=+-=.
T Consensus 71 e~a~~a~~aGA~Fiv---SP~~~~--~v~~~~~~~~--i~~iPG~-----------~TptEi~~A~~--~G~~~vK~FPA 130 (196)
T PF01081_consen 71 EQAEAAIAAGAQFIV---SPGFDP--EVIEYAREYG--IPYIPGV-----------MTPTEIMQALE--AGADIVKLFPA 130 (196)
T ss_dssp HHHHHHHHHT-SEEE---ESS--H--HHHHHHHHHT--SEEEEEE-----------SSHHHHHHHHH--TT-SEEEETTT
T ss_pred HHHHHHHHcCCCEEE---CCCCCH--HHHHHHHHcC--CcccCCc-----------CCHHHHHHHHH--CCCCEEEEecc
Confidence 356667779999998 466654 4677778766 8888433 46788888775 35566655433
Q ss_pred ChhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeEEeecC
Q 019107 252 SPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCC 318 (346)
Q Consensus 252 ~p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivGGCC 318 (346)
+.---.+.++.++.-.. .+-+.|-.|. +++ .+++|++.|+..+|+--
T Consensus 131 ~~~GG~~~ik~l~~p~p-~~~~~ptGGV---------------~~~----N~~~~l~ag~~~vg~Gs 177 (196)
T PF01081_consen 131 GALGGPSYIKALRGPFP-DLPFMPTGGV---------------NPD----NLAEYLKAGAVAVGGGS 177 (196)
T ss_dssp TTTTHHHHHHHHHTTTT-T-EEEEBSS-----------------TT----THHHHHTSTTBSEEEES
T ss_pred hhcCcHHHHHHHhccCC-CCeEEEcCCC---------------CHH----HHHHHHhCCCEEEEECc
Confidence 21111345555553211 1334566653 222 24568999977666633
No 275
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=60.52 E-value=1.6e+02 Score=28.22 Aligned_cols=83 Identities=14% Similarity=0.154 Sum_probs=44.5
Q ss_pred HHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCC--CHHHHHHHhhcCCCceEEEECCC
Q 019107 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGD--SILECASIADSCEQVVAVGINCT 251 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~--~~~~av~~~~~~~~~~avGvNC~ 251 (346)
++.+.+.|+|.+-++.-.++.|++. ..+.+..++=.+ +....+..|+ .+.+.++.+-+ .+...+...|.
T Consensus 246 l~~~~~~g~d~~~~d~~~dl~~~~~------~~g~~~~i~Gni--dp~~~l~~gt~eeI~~~v~~~l~-~g~~Il~~gcg 316 (339)
T PRK06252 246 LEEMADCGFDGISIDEKVDVKTAKE------NVGDRAALIGNV--STSFTLLNGTPEKVKAEAKKCLE-DGVDILAPGCG 316 (339)
T ss_pred HHHHHhcCCCeeccCCCCCHHHHHH------HhCCCeEEEecc--CcHHHhcCCCHHHHHHHHHHHHH-cCCCEEcCCCC
Confidence 5556678999998888778877643 233123333222 3323444443 23333333322 23456677785
Q ss_pred -----ChhhHHHHHHHHhh
Q 019107 252 -----SPRFIHGLILSVRK 265 (346)
Q Consensus 252 -----~p~~~~~~l~~l~~ 265 (346)
.++.+..+++..+.
T Consensus 317 i~~~tp~enl~a~v~a~~~ 335 (339)
T PRK06252 317 IAPKTPLENIKAMVEARKE 335 (339)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 24666666665543
No 276
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=60.34 E-value=93 Score=28.92 Aligned_cols=79 Identities=9% Similarity=-0.020 Sum_probs=50.1
Q ss_pred HHHHHHhCCCCEEEEcc---CCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEEC
Q 019107 173 RVLILANSGADLIAFET---IPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGIN 249 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET---~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvN 249 (346)
.++.+...|.|++++.. ..+..++..++.+++..+ ..++|-+. ..+...+-..++ .++++|.+-
T Consensus 25 ~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g--~~~~VRv~---------~~~~~~i~~~Ld--~Ga~gIivP 91 (249)
T TIGR02311 25 AAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYP--SSPVVRPA---------IGDPVLIKQLLD--IGAQTLLVP 91 (249)
T ss_pred HHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcC--CCcEEECC---------CCCHHHHHHHhC--CCCCEEEec
Confidence 35567779999999874 345666666666665544 56666542 112234444444 467888887
Q ss_pred CC-ChhhHHHHHHHHh
Q 019107 250 CT-SPRFIHGLILSVR 264 (346)
Q Consensus 250 C~-~p~~~~~~l~~l~ 264 (346)
.+ +++.+..+++..+
T Consensus 92 ~v~s~e~a~~~v~~~~ 107 (249)
T TIGR02311 92 MIETAEQAEAAVAATR 107 (249)
T ss_pred CcCCHHHHHHHHHHcC
Confidence 76 6788877777654
No 277
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=60.19 E-value=84 Score=30.22 Aligned_cols=85 Identities=18% Similarity=0.111 Sum_probs=53.9
Q ss_pred HHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEEC
Q 019107 170 HRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGIN 249 (346)
Q Consensus 170 ~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvN 249 (346)
+.++++.+.+.+|+++.+ ++..+.+ .++.+++.+ .+++..+ .++.++.... + .++++|.+.
T Consensus 76 ~~~~~~~~~~~~v~~v~~-~~g~p~~---~i~~lk~~g--~~v~~~v-----------~s~~~a~~a~-~-~GaD~Ivv~ 136 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTT-GAGNPGK---YIPRLKENG--VKVIPVV-----------ASVALAKRME-K-AGADAVIAE 136 (307)
T ss_pred HHHHHHHHHhCCCCEEEE-cCCCcHH---HHHHHHHcC--CEEEEEc-----------CCHHHHHHHH-H-cCCCEEEEE
Confidence 356788888999999987 4555543 566677765 7776433 2344554433 3 377887664
Q ss_pred C---C-C--hhhHHHHHHHHhhhcCCcEEE
Q 019107 250 C---T-S--PRFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 250 C---~-~--p~~~~~~l~~l~~~~~~pl~v 273 (346)
. . + ......+++++.+..+.|+++
T Consensus 137 g~eagGh~g~~~~~~ll~~v~~~~~iPvia 166 (307)
T TIGR03151 137 GMESGGHIGELTTMALVPQVVDAVSIPVIA 166 (307)
T ss_pred CcccCCCCCCCcHHHHHHHHHHHhCCCEEE
Confidence 4 2 2 122467788887777888765
No 278
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=60.04 E-value=1.5e+02 Score=27.83 Aligned_cols=90 Identities=18% Similarity=0.215 Sum_probs=52.7
Q ss_pred HHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHH-hhcCCCceE-EEEC
Q 019107 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASI-ADSCEQVVA-VGIN 249 (346)
Q Consensus 172 ~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~-~~~~~~~~a-vGvN 249 (346)
+-++.+.++|||.+++=-+|- +|.....+++++.+ +..+ .|.. ..++ .+-++. .....+... +..+
T Consensus 106 ~F~~~~~~aGvdGlIipDLP~-ee~~~~~~~~~~~g--l~~I-~lv~-------p~t~-~~Ri~~i~~~a~gFiY~vs~~ 173 (259)
T PF00290_consen 106 RFFKEAKEAGVDGLIIPDLPP-EESEELREAAKKHG--LDLI-PLVA-------PTTP-EERIKKIAKQASGFIYLVSRM 173 (259)
T ss_dssp HHHHHHHHHTEEEEEETTSBG-GGHHHHHHHHHHTT---EEE-EEEE-------TTS--HHHHHHHHHH-SSEEEEESSS
T ss_pred HHHHHHHHcCCCEEEEcCCCh-HHHHHHHHHHHHcC--CeEE-EEEC-------CCCC-HHHHHHHHHhCCcEEEeeccC
Confidence 345567779999999766663 67788888888877 5544 3322 1222 333333 333333222 2223
Q ss_pred CC-C-----hhhHHHHHHHHhhhcCCcEEE
Q 019107 250 CT-S-----PRFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 250 C~-~-----p~~~~~~l~~l~~~~~~pl~v 273 (346)
-+ + +..+...++.+++.++.|+.+
T Consensus 174 GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~v 203 (259)
T PF00290_consen 174 GVTGSRTELPDELKEFIKRIKKHTDLPVAV 203 (259)
T ss_dssp SSSSTTSSCHHHHHHHHHHHHHTTSS-EEE
T ss_pred CCCCCcccchHHHHHHHHHHHhhcCcceEE
Confidence 21 1 467888899999988999866
No 279
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=59.87 E-value=1.5e+02 Score=27.68 Aligned_cols=54 Identities=13% Similarity=0.076 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHHHHHhCCC---CEEE---EccCCCHHHHHHHHHH---HHHhCCCCcEEEEEE
Q 019107 162 SLETLKEFHRRRVLILANSGA---DLIA---FETIPNKLEAKAYAEL---LEEEGITIPAWFSFN 217 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~~~gv---D~i~---~ET~~~~~E~~a~~~a---~~~~~~~~pv~is~~ 217 (346)
..++..++++++++.+.+.|+ |+++ +....+.++...+++. +++. +.|+.+.++
T Consensus 142 ~~~~~~~~~~~~i~~~~~~Gi~~~~iilDPg~gf~ks~~~~~~~l~~i~~l~~~--~~p~l~G~S 204 (257)
T TIGR01496 142 VVEEVLRFLEARAEELVAAGVAAERIILDPGIGFGKTPEHNLELLKHLEEFVAL--GYPLLVGAS 204 (257)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHEEEECCCCcccCHHHHHHHHHHHHHHHhC--CCcEEEEec
Confidence 467888999999999999998 4443 2222344444444444 4543 489999884
No 280
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=59.58 E-value=1.2e+02 Score=28.83 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=40.1
Q ss_pred CCChHHHHHHHHHHHHhhcceeecccc--ccCHHhHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 019107 51 VSSPHLVRKVHLDYLDAGANIIITASY--QATIQGFEAKGFSTEEAEALLRRSVEIACEAREIY 112 (346)
Q Consensus 51 l~~Pe~V~~iH~~yl~AGA~iI~TnTy--~as~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~ 112 (346)
+++.|.|+.+-+.--.+||+++.---| ++|++.|+- +.. .++++-++|++.+
T Consensus 55 vEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQG--lge--------~gL~~l~~a~~~~ 108 (286)
T COG2876 55 VESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQG--LGE--------EGLKLLKRAADET 108 (286)
T ss_pred cCCHHHHHHHHHHHHHcchhhccCCcCCCCCCcccccc--cCH--------HHHHHHHHHHHHc
Confidence 789999999999999999999998888 577766643 332 3566667776653
No 281
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=59.46 E-value=92 Score=29.16 Aligned_cols=76 Identities=8% Similarity=0.003 Sum_probs=47.0
Q ss_pred HHHHHHhCCCCEEEEc---cCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEEC
Q 019107 173 RVLILANSGADLIAFE---TIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGIN 249 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~E---T~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvN 249 (346)
.++.+...|.|++++. +-.+..++..++.+++..+ .+.+|-+.. .+...+-+.++ .|+.+|.+-
T Consensus 32 ~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g--~~~lVRvp~---------~~~~~i~r~LD--~Ga~giivP 98 (256)
T PRK10558 32 TTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSA--SAPVVRVPT---------NEPVIIKRLLD--IGFYNFLIP 98 (256)
T ss_pred HHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcC--CCcEEECCC---------CCHHHHHHHhC--CCCCeeeec
Confidence 4666778999999987 4457788888888888765 777766632 12233333333 255555555
Q ss_pred CC-ChhhHHHHHH
Q 019107 250 CT-SPRFIHGLIL 261 (346)
Q Consensus 250 C~-~p~~~~~~l~ 261 (346)
.+ .++.+..+++
T Consensus 99 ~v~tae~a~~~v~ 111 (256)
T PRK10558 99 FVETAEEARRAVA 111 (256)
T ss_pred CcCCHHHHHHHHH
Confidence 54 3555555544
No 282
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=59.41 E-value=1.2e+02 Score=29.59 Aligned_cols=77 Identities=17% Similarity=0.231 Sum_probs=54.9
Q ss_pred CCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCC------HHHHHHHhhcCCCceEEEE----C
Q 019107 180 SGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDS------ILECASIADSCEQVVAVGI----N 249 (346)
Q Consensus 180 ~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~------~~~av~~~~~~~~~~avGv----N 249 (346)
.++|++ |+++++-++.+-+++.+.|....|+.-+...+ ++.|.. +.+.++.+.++.++.-+|+ +
T Consensus 92 ~~~Dvs---~~sel~~arqlse~A~~~Gk~h~VlLmVd~~D---lreG~~~~~~~~l~~~V~eI~~lkGi~~vGlgTnF~ 165 (353)
T COG3457 92 RKVDVS---TVSELDTARQLSEAAVRMGKVHDVLLMVDYGD---LREGQWGFLIEDLEETVEEIQQLKGIHLVGLGTNFP 165 (353)
T ss_pred HhcCeE---EEecHHHHHHHHHHHHHhCcceeEEEEEEccc---ccCcchhhHHHHHHHHHHHHhcCCCceEEeeecccc
Confidence 368966 47888889999999888886667777776654 667754 6777777767677666665 7
Q ss_pred CCC-----hhhHHHHHHH
Q 019107 250 CTS-----PRFIHGLILS 262 (346)
Q Consensus 250 C~~-----p~~~~~~l~~ 262 (346)
|-+ |+.+..+++.
T Consensus 166 Cfg~v~PTp~n~~~ll~~ 183 (353)
T COG3457 166 CFGDVLPTPENLESLLQG 183 (353)
T ss_pred cccCcCCCcccHHHHHHH
Confidence 852 5677776653
No 283
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=59.13 E-value=95 Score=28.80 Aligned_cols=93 Identities=10% Similarity=-0.044 Sum_probs=56.0
Q ss_pred HHHHHhCCCCEEEEccC--CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcc------cCCCCHHHHHHHhhcCCCceE
Q 019107 174 VLILANSGADLIAFETI--PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINV------VSGDSILECASIADSCEQVVA 245 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~--~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l------~~G~~~~~av~~~~~~~~~~a 245 (346)
++.+.+.|+|-+++-|. .+++-++.+ .+++ + .+++|+.++++.-. .++.++.+.+..+.. .++..
T Consensus 88 ~~~~l~~Ga~rvvigT~a~~~p~~l~~~----~~~~-~-~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~-~g~~~ 160 (241)
T PRK14114 88 AEKLRKLGYRRQIVSSKVLEDPSFLKFL----KEID-V-EPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKE-YGLEE 160 (241)
T ss_pred HHHHHHCCCCEEEECchhhCCHHHHHHH----HHhC-C-CEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHh-cCCCE
Confidence 44466689999988764 455444333 3345 3 37899988654212 245577788888765 35556
Q ss_pred EEECCCChh-----hHHHHHHHHhhhcCCcEEE
Q 019107 246 VGINCTSPR-----FIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 246 vGvNC~~p~-----~~~~~l~~l~~~~~~pl~v 273 (346)
+-++...-+ .=..+++++.+..+.|+++
T Consensus 161 ii~tdI~rdGt~~G~d~el~~~l~~~~~~pvia 193 (241)
T PRK14114 161 IVHTEIEKDGTLQEHDFSLTRKIAIEAEVKVFA 193 (241)
T ss_pred EEEEeechhhcCCCcCHHHHHHHHHHCCCCEEE
Confidence 666653211 1145667777666778765
No 284
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=59.01 E-value=60 Score=31.15 Aligned_cols=62 Identities=11% Similarity=0.113 Sum_probs=43.7
Q ss_pred HHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECC
Q 019107 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC 250 (346)
++....++|+|+|++..| ++++++.+++.+++ .+.+..+ .|-++..+.+++. .+++.|-+-+
T Consensus 209 ea~~a~~agaDiImLDnm-spe~l~~av~~~~~-----~~~leaS--------GGI~~~ni~~yA~--tGVD~Is~ga 270 (290)
T PRK06559 209 AAEEAAAAGADIIMLDNM-SLEQIEQAITLIAG-----RSRIECS--------GNIDMTTISRFRG--LAIDYVSSGS 270 (290)
T ss_pred HHHHHHHcCCCEEEECCC-CHHHHHHHHHHhcC-----ceEEEEE--------CCCCHHHHHHHHh--cCCCEEEeCc
Confidence 344466789999999997 78888888886552 2333332 4677777777664 5788887776
No 285
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=58.93 E-value=1.2e+02 Score=29.53 Aligned_cols=95 Identities=13% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCceEEEECCCC---------h-----------------hhHHHHHHHHhhhcCC-cEEEeeCCCCccc
Q 019107 230 ILECASIADSCEQVVAVGINCTS---------P-----------------RFIHGLILSVRKVTSK-PVIIYPNSGETYN 282 (346)
Q Consensus 230 ~~~av~~~~~~~~~~avGvNC~~---------p-----------------~~~~~~l~~l~~~~~~-pl~vypN~g~~~~ 282 (346)
+.+++..+.. .+.++|-|||.+ | ..+..+++.+++.... |+++.-|..
T Consensus 154 f~~aA~~a~~-aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~---- 228 (338)
T cd02933 154 FRQAARNAIE-AGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPF---- 228 (338)
T ss_pred HHHHHHHHHH-cCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECcc----
Q ss_pred ccccccccc--CCCChHHHHHHHHHHHHcCCeEE---eecC-----CCchHHHHHHHHHHc
Q 019107 283 AELKKWVES--TGVRDEDFVSYIGKWRDAGASLF---GGCC-----RTTPNTIKAISRVLS 333 (346)
Q Consensus 283 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~G~~iv---GGCC-----Gt~P~hI~al~~~~~ 333 (346)
+|... ...+.+++.+.++.+.+.|+.+| +|.+ +...+..+++++.++
T Consensus 229 ----~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ 285 (338)
T cd02933 229 ----GTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFK 285 (338)
T ss_pred ----ccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcC
No 286
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=58.81 E-value=1.6e+02 Score=27.49 Aligned_cols=150 Identities=17% Similarity=0.133 Sum_probs=81.3
Q ss_pred ChHHHHHHHHHHHHhhcceeeccccccCHHhHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCC
Q 019107 53 SPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSR 132 (346)
Q Consensus 53 ~Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~ 132 (346)
+.+.+++.-+..++.|++-|..+--..-.. -++.++-+++.+.+++.+ .++
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~GstGE~~-----~ls~~Er~~l~~~~~~~~------------------------~~~ 66 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVLGTTGEAP-----TLTDEERKEVIEAVVEAV------------------------AGR 66 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcccc-----cCCHHHHHHHHHHHHHHh------------------------CCC
Confidence 567788887888889999776543222211 234444555554444432 122
Q ss_pred CcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcc----CCCHHHHHHHHHHHHHhCC
Q 019107 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFET----IPNKLEAKAYAELLEEEGI 208 (346)
Q Consensus 133 ~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET----~~~~~E~~a~~~a~~~~~~ 208 (346)
-.+|+| +|.. +.++..+ +++...+.|+|.+++-. -++-+++....+.+.+..
T Consensus 67 ~~vi~g-v~~~------------------~~~~~i~----~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~- 122 (281)
T cd00408 67 VPVIAG-VGAN------------------STREAIE----LARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADAS- 122 (281)
T ss_pred CeEEEe-cCCc------------------cHHHHHH----HHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcC-
Confidence 345565 2221 3344333 56677889999998753 125567666666665543
Q ss_pred CCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCC--hhhHHHHHH
Q 019107 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTS--PRFIHGLIL 261 (346)
Q Consensus 209 ~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~--p~~~~~~l~ 261 (346)
++|+++--.....+. .-++.. +..+.+. +-.+|+-.++ ...+..+++
T Consensus 123 ~~pi~iYn~P~~tg~---~l~~~~-~~~L~~~--~~v~giK~s~~d~~~~~~~~~ 171 (281)
T cd00408 123 DLPVILYNIPGRTGV---DLSPET-IARLAEH--PNIVGIKDSSGDLDRLTRLIA 171 (281)
T ss_pred CCCEEEEECccccCC---CCCHHH-HHHHhcC--CCEEEEEeCCCCHHHHHHHHH
Confidence 699997643222222 234443 3334332 4567777764 344444443
No 287
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=58.66 E-value=1.6e+02 Score=27.67 Aligned_cols=149 Identities=19% Similarity=0.133 Sum_probs=81.3
Q ss_pred ChHHHHHHHHHHHHhhcceeeccccccCHHhHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCC
Q 019107 53 SPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSR 132 (346)
Q Consensus 53 ~Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~ 132 (346)
+.+.+++.-+.+++.|.+-|..+--..--.. ++.++-.++++.+++. + .++
T Consensus 20 D~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~-----ls~~Er~~~~~~~~~~----~--------------------~~~ 70 (292)
T PRK03170 20 DFAALRKLVDYLIANGTDGLVVVGTTGESPT-----LTHEEHEELIRAVVEA----V--------------------NGR 70 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcCCcccc-----CCHHHHHHHHHHHHHH----h--------------------CCC
Confidence 5677888888889999998776533222222 3445555555544443 2 122
Q ss_pred CcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcc----CCCHHHHHHHHHHHHHhCC
Q 019107 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFET----IPNKLEAKAYAELLEEEGI 208 (346)
Q Consensus 133 ~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET----~~~~~E~~a~~~a~~~~~~ 208 (346)
-.+|+| +|.. +.++..+ +++...+.|+|.+++-. -++-+|+....+.+.+..
T Consensus 71 ~~vi~g-v~~~------------------~~~~~i~----~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~- 126 (292)
T PRK03170 71 VPVIAG-TGSN------------------STAEAIE----LTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEAT- 126 (292)
T ss_pred CcEEee-cCCc------------------hHHHHHH----HHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcC-
Confidence 335555 2221 3344444 67777889999998742 124566666666655543
Q ss_pred CCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCCh--hhHHHHH
Q 019107 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSP--RFIHGLI 260 (346)
Q Consensus 209 ~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~p--~~~~~~l 260 (346)
++|+++-=.....+. .-+. +.+..+... +-.+|+-.+++ ..+..++
T Consensus 127 ~~pv~lYn~P~~~g~---~l~~-~~~~~L~~~--p~v~giK~s~~d~~~~~~~~ 174 (292)
T PRK03170 127 DLPIILYNVPGRTGV---DILP-ETVARLAEH--PNIVGIKEATGDLERVSELI 174 (292)
T ss_pred CCCEEEEECccccCC---CCCH-HHHHHHHcC--CCEEEEEECCCCHHHHHHHH
Confidence 599996532211222 2333 344444333 45677776543 4444443
No 288
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=58.60 E-value=1.6e+02 Score=27.48 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=34.0
Q ss_pred CChHHHHHHHHHHHHcCCeEEeecCCC----chHHHHHHHHHHcCCC
Q 019107 294 VRDEDFVSYIGKWRDAGASLFGGCCRT----TPNTIKAISRVLSNKS 336 (346)
Q Consensus 294 ~~~~~~~~~~~~~~~~G~~ivGGCCGt----~P~hI~al~~~~~~~~ 336 (346)
.+++.+.+.++++.+.|+..|. .|-| +|..+..+-+.++...
T Consensus 140 ~~~~~~~~~~~~~~~~G~~~i~-l~DT~G~~~P~~v~~lv~~l~~~~ 185 (268)
T cd07940 140 TDLDFLIEVVEAAIEAGATTIN-IPDTVGYLTPEEFGELIKKLKENV 185 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEE-ECCCCCCCCHHHHHHHHHHHHHhC
Confidence 3578889999999999999886 5555 9999998888887654
No 289
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=58.47 E-value=22 Score=33.56 Aligned_cols=45 Identities=29% Similarity=0.393 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEE
Q 019107 162 SLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAW 213 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~ 213 (346)
+.+++.+ -.++++++.++|+|.|++|-+| .+.++.+.+. .+.|++
T Consensus 155 t~~~a~~-~i~~A~a~e~AGA~~ivlE~vp-~~~a~~It~~-----l~iP~i 199 (263)
T TIGR00222 155 DEEAAKK-LLEDALALEEAGAQLLVLECVP-VELAAKITEA-----LAIPVI 199 (263)
T ss_pred CHHHHHH-HHHHHHHHHHcCCCEEEEcCCc-HHHHHHHHHh-----CCCCEE
Confidence 4444444 5567889999999999999999 4555555443 237754
No 290
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=58.08 E-value=82 Score=31.19 Aligned_cols=113 Identities=19% Similarity=0.183 Sum_probs=60.9
Q ss_pred ChHHHHHHHHHHHHhhcceeeccccccCHHhHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCC
Q 019107 53 SPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSR 132 (346)
Q Consensus 53 ~Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~ 132 (346)
+|+...++-++++.+|+|.|.-.-=..+...+ +.++-.++..++++.|.+ + +++
T Consensus 144 d~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~-----~~eER~~~v~~av~~a~~-------~--------------TG~ 197 (367)
T cd08205 144 SPEELAELAYELALGGIDLIKDDELLADQPYA-----PFEERVRACMEAVRRANE-------E--------------TGR 197 (367)
T ss_pred CHHHHHHHHHHHHhcCCCeeeccccccCcccC-----CHHHHHHHHHHHHHHHHH-------h--------------hCC
Confidence 57889999999999999998633222221111 112223344444433321 1 234
Q ss_pred CcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcE
Q 019107 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPA 212 (346)
Q Consensus 133 ~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv 212 (346)
++.+++.+.. +.+|+.+ +++...+.|+|.+++-....-..+ .+.+++.. ++|+
T Consensus 198 ~~~y~~nit~-------------------~~~e~i~----~a~~a~~~Gad~vmv~~~~~g~~~---~~~l~~~~-~lpi 250 (367)
T cd08205 198 KTLYAPNITG-------------------DPDELRR----RADRAVEAGANALLINPNLVGLDA---LRALAEDP-DLPI 250 (367)
T ss_pred cceEEEEcCC-------------------CHHHHHH----HHHHHHHcCCCEEEEecccccccH---HHHHHhcC-CCeE
Confidence 4445553321 2255555 455566789999998766543221 22233322 5888
Q ss_pred EEEEEE
Q 019107 213 WFSFNS 218 (346)
Q Consensus 213 ~is~~~ 218 (346)
+..+..
T Consensus 251 ~~H~a~ 256 (367)
T cd08205 251 MAHPAF 256 (367)
T ss_pred EEccCc
Confidence 876654
No 291
>PRK08227 autoinducer 2 aldolase; Validated
Probab=57.54 E-value=1.7e+02 Score=27.61 Aligned_cols=89 Identities=11% Similarity=0.142 Sum_probs=45.5
Q ss_pred HHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCccc-C------CCCHHHHHHHhhcCCCceEE
Q 019107 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVV-S------GDSILECASIADSCEQVVAV 246 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~-~------G~~~~~av~~~~~~~~~~av 246 (346)
+..+.. ++|.+++= +.+++.......+.|+++.++-.. .+. + -.++++|++ .+++||
T Consensus 48 ~~~i~~-~~da~~~~--------~G~~~~~~~~~~~~~lil~ls~~t--~~~~~~~~~~l~~sVeeAvr-----lGAdAV 111 (264)
T PRK08227 48 IAPLFP-YADVLMCT--------RGILRSVVPPATNKPVVLRASGGN--SILKELSNEAVAVDMEDAVR-----LNACAV 111 (264)
T ss_pred HHHHhh-cCCEEEeC--------hhHHHhcccccCCCcEEEEEcCCC--CCCCCCCcccceecHHHHHH-----CCCCEE
Confidence 444555 79999843 445544333334689888886321 111 1 123444443 356777
Q ss_pred EECCC-ChhhHHHHHHHHhhh------cCCcEEE-eeCCC
Q 019107 247 GINCT-SPRFIHGLILSVRKV------TSKPVII-YPNSG 278 (346)
Q Consensus 247 GvNC~-~p~~~~~~l~~l~~~------~~~pl~v-ypN~g 278 (346)
++..- +.+.-...|+.+.+. ...|+++ ||-..
T Consensus 112 ~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~ 151 (264)
T PRK08227 112 AAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGK 151 (264)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCC
Confidence 77774 333323334333332 3678654 66544
No 292
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=57.42 E-value=1.7e+02 Score=27.61 Aligned_cols=89 Identities=17% Similarity=0.246 Sum_probs=56.3
Q ss_pred HHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCce-EEEECCC-
Q 019107 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVV-AVGINCT- 251 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~-avGvNC~- 251 (346)
++.+.++|||.+++=-.|. +|.....+.+++.+ +..+.-++. .++.+..-..++...+.. .+..+=+
T Consensus 112 ~~~~~~aGvdgviipDLP~-ee~~~~~~~~~~~g--i~~I~lv~P--------tT~~eri~~i~~~a~gFIY~vS~~GvT 180 (263)
T CHL00200 112 IKKISQAGVKGLIIPDLPY-EESDYLISVCNLYN--IELILLIAP--------TSSKSRIQKIARAAPGCIYLVSTTGVT 180 (263)
T ss_pred HHHHHHcCCeEEEecCCCH-HHHHHHHHHHHHcC--CCEEEEECC--------CCCHHHHHHHHHhCCCcEEEEcCCCCC
Confidence 5567789999999877774 78888999999977 555544432 222232323333222222 2233332
Q ss_pred C-----hhhHHHHHHHHhhhcCCcEEE
Q 019107 252 S-----PRFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 252 ~-----p~~~~~~l~~l~~~~~~pl~v 273 (346)
+ ++.+..+++.+++.++.|+.+
T Consensus 181 G~~~~~~~~~~~~i~~ir~~t~~Pi~v 207 (263)
T CHL00200 181 GLKTELDKKLKKLIETIKKMTNKPIIL 207 (263)
T ss_pred CCCccccHHHHHHHHHHHHhcCCCEEE
Confidence 1 466788888998888999876
No 293
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=57.36 E-value=1.1e+02 Score=28.64 Aligned_cols=76 Identities=11% Similarity=-0.020 Sum_probs=47.4
Q ss_pred HHHHHHhCCCCEEEEcc---CCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEEC
Q 019107 173 RVLILANSGADLIAFET---IPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGIN 249 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET---~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvN 249 (346)
.++.+...|.|++++.+ .-+..++..++.+++..+ .+.+|-+.. .+...+-+.++ .|+.+|.+-
T Consensus 25 ~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g--~~~~VRvp~---------~~~~~i~r~LD--~Ga~gIivP 91 (249)
T TIGR03239 25 TTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSA--SAPVVRPPW---------NEPVIIKRLLD--IGFYNFLIP 91 (249)
T ss_pred HHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcC--CCcEEECCC---------CCHHHHHHHhc--CCCCEEEec
Confidence 35667779999999874 447778888888888765 777766632 12233333333 356666665
Q ss_pred CC-ChhhHHHHHH
Q 019107 250 CT-SPRFIHGLIL 261 (346)
Q Consensus 250 C~-~p~~~~~~l~ 261 (346)
.+ .++.+..+++
T Consensus 92 ~v~taeea~~~v~ 104 (249)
T TIGR03239 92 FVESAEEAERAVA 104 (249)
T ss_pred CcCCHHHHHHHHH
Confidence 55 4555555544
No 294
>KOG2949 consensus Ketopantoate hydroxymethyltransferase [Coenzyme transport and metabolism]
Probab=57.06 E-value=1.2e+02 Score=28.22 Aligned_cols=87 Identities=17% Similarity=0.219 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCC------CcccCCCCHHHHHHHhhc---
Q 019107 169 FHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDG------INVVSGDSILECASIADS--- 239 (346)
Q Consensus 169 ~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~------~~l~~G~~~~~av~~~~~--- 239 (346)
.-+..++.+..+|+|.+=+|--++ .-++ +++.+-+. +.||+-.+-+.+. +.-..|.++..+++.++.
T Consensus 118 a~knAv~vmk~~g~~~vK~EgGs~-~~~~-~~~~l~er--gipV~gHvGLTPQ~v~~lGGyk~QGr~~~~a~~l~EtAmq 193 (306)
T KOG2949|consen 118 AVKNAVRVMKEGGMDAVKLEGGSN-SRIT-AAKRLVER--GIPVMGHVGLTPQAVSVLGGYKPQGRNIASAVKLVETAMQ 193 (306)
T ss_pred HHHHHHHHHHhcCCceEEEccCcH-HHHH-HHHHHHHc--CCceeeeccCChhhhhhccCcCccchhHHHHHHHHHHHHH
Confidence 445678888889999999997652 2223 33444443 4999877765442 333467788887776642
Q ss_pred --CCCceEEEECCCChhhHHHH
Q 019107 240 --CEQVVAVGINCTSPRFIHGL 259 (346)
Q Consensus 240 --~~~~~avGvNC~~p~~~~~~ 259 (346)
..+++-+-+.|++|.....+
T Consensus 194 Lqk~Gc~svvlECvP~~~A~~i 215 (306)
T KOG2949|consen 194 LQKAGCFSVVLECVPPPVAAAI 215 (306)
T ss_pred HHhcccceEeeecCChHHHHHH
Confidence 25788999999975444333
No 295
>PLN02417 dihydrodipicolinate synthase
Probab=57.04 E-value=1.7e+02 Score=27.48 Aligned_cols=141 Identities=11% Similarity=-0.049 Sum_probs=75.7
Q ss_pred ChHHHHHHHHHHHHhhcceeeccccccCHHhHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCC
Q 019107 53 SPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSR 132 (346)
Q Consensus 53 ~Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~ 132 (346)
+.+.+++.-+-+++.|++-|..+--..-...| +.++-+++++.+++.+ .++
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~l-----s~~Er~~~~~~~~~~~------------------------~~~ 70 (280)
T PLN02417 20 DLEAYDSLVNMQIENGAEGLIVGGTTGEGQLM-----SWDEHIMLIGHTVNCF------------------------GGK 70 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcchhhC-----CHHHHHHHHHHHHHHh------------------------CCC
Confidence 56778888888899999977665443333333 4455555655554432 122
Q ss_pred CcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcc----CCCHHHHHHHHHHHHHhCC
Q 019107 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFET----IPNKLEAKAYAELLEEEGI 208 (346)
Q Consensus 133 ~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET----~~~~~E~~a~~~a~~~~~~ 208 (346)
-.+|+| +|.. +.++..+ +++...+.|+|.+++-. -++.+|+....+.+.+.
T Consensus 71 ~pvi~g-v~~~------------------~t~~~i~----~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~-- 125 (280)
T PLN02417 71 IKVIGN-TGSN------------------STREAIH----ATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDM-- 125 (280)
T ss_pred CcEEEE-CCCc------------------cHHHHHH----HHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhh--
Confidence 234555 3332 2344433 56667778999888642 12556666666665553
Q ss_pred CCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCChh
Q 019107 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPR 254 (346)
Q Consensus 209 ~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~p~ 254 (346)
. |+++-=.....+. .-++. .+..+.+ .+..+||-.++.+
T Consensus 126 ~-pi~lYn~P~~tg~---~l~~~-~l~~l~~--~pni~giKdss~~ 164 (280)
T PLN02417 126 G-PTIIYNVPGRTGQ---DIPPE-VIFKIAQ--HPNFAGVKECTGN 164 (280)
T ss_pred C-CEEEEEChhHhCc---CCCHH-HHHHHhc--CCCEEEEEeCCCc
Confidence 3 8764322111121 12333 3333433 2457788776543
No 296
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=56.74 E-value=1.9e+02 Score=27.76 Aligned_cols=145 Identities=13% Similarity=-0.043 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEc-c----CCCH---HHHH----HHHHHHHHhCCCCcEEEEEEEcCC--CcccCCC
Q 019107 163 LETLKEFHRRRVLILANSGADLIAFE-T----IPNK---LEAK----AYAELLEEEGITIPAWFSFNSKDG--INVVSGD 228 (346)
Q Consensus 163 ~~e~~~~~~~~i~~l~~~gvD~i~~E-T----~~~~---~E~~----a~~~a~~~~~~~~pv~is~~~~~~--~~l~~G~ 228 (346)
.+.+.+.+++.++.|.++|+++|-+. . ..+. +++. .+.+++.+.+.+.++.+.+...+. ....+|
T Consensus 150 ~~~la~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~lHiC~G~~~~~~~~~~- 228 (332)
T cd03311 150 AMDLALALREEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADRPDDTQIHTHICYGNFRSTWAAEG- 228 (332)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeecchhhccCCcccHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCCCcccccccC-
Confidence 45677789999999999999977543 2 2221 1222 223333332324566666643321 223344
Q ss_pred CHHHHHHHhhcCCCceEEEECCCCh-hhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHH
Q 019107 229 SILECASIADSCEQVVAVGINCTSP-RFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWR 307 (346)
Q Consensus 229 ~~~~av~~~~~~~~~~avGvNC~~p-~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (346)
+...++..+... .++++++-...+ ..-...|+.+.. ++.+++ |. .|.. ..|.+ ++++..+.+++..
T Consensus 229 ~y~~i~~~l~~~-~vd~~~le~~~~~~~~~~~l~~~~~--~k~l~~----Gv-Vd~~-~~~~e----~~e~v~~ri~~~~ 295 (332)
T cd03311 229 GYEPIAEYIFEL-DVDVFFLEYDNSRAGGLEPLKELPY--DKKVGL----GV-VDVK-SPEVE----SPEEVKDRIEEAA 295 (332)
T ss_pred cHHHHHHHHHhC-CCCEEEEEEcCCCCcchHHHHhCCC--CCEEEe----ee-ecCC-CCCCC----CHHHHHHHHHHHH
Confidence 446667766553 589999988753 222233343321 222211 21 1111 12332 4788888887777
Q ss_pred HcCC---eEEeecCCCc
Q 019107 308 DAGA---SLFGGCCRTT 321 (346)
Q Consensus 308 ~~G~---~ivGGCCGt~ 321 (346)
+... -++.=-||..
T Consensus 296 ~~~~~~~l~lsp~CGl~ 312 (332)
T cd03311 296 KYVPLEQLWVSPDCGFA 312 (332)
T ss_pred hhCCHHHEEECCCCCCC
Confidence 6443 2677778853
No 297
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=56.71 E-value=2.1e+02 Score=28.28 Aligned_cols=137 Identities=16% Similarity=0.159 Sum_probs=73.1
Q ss_pred HHHHHHHhCCCCEEE-Ecc------CCCHHH-----HHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhc
Q 019107 172 RRVLILANSGADLIA-FET------IPNKLE-----AKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS 239 (346)
Q Consensus 172 ~~i~~l~~~gvD~i~-~ET------~~~~~E-----~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~ 239 (346)
.-++.+.++|+|.|. |++ +.+.+| ...+++-+++.+ ..+.+|.| |. |. ...+..+..
T Consensus 193 ~Yl~~qi~aGAdavqifDsW~g~l~~~~~~~f~~~~~~~i~~~vk~~~-~~~pii~f-~~-------ga--~~~l~~m~~ 261 (352)
T COG0407 193 EYLKAQIEAGADAVQIFDSWAGVLSMIDYDEFVLPYMKRIVREVKEVK-GGVPVIHF-CK-------GA--GHLLEDMAK 261 (352)
T ss_pred HHHHHHHHhCCCEEEeeccccccCCcccHHHHhhhHHHHHHHHHHHhC-CCCcEEEE-CC-------Cc--HHHHHHHHh
Confidence 334556779999984 344 111222 122344455544 22445566 32 21 123444444
Q ss_pred CCCceEEEECCCChhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeE----Ee
Q 019107 240 CEQVVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASL----FG 315 (346)
Q Consensus 240 ~~~~~avGvNC~~p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~i----vG 315 (346)
.+.+++|+-+.-+ +..+ ++.......++-|-- + ..+. -+++...+.+++.++.|... +=
T Consensus 262 -~g~d~l~vdw~v~--l~~a----~~~~~~~~~lqGNld----P---~lL~---~~~~~i~~~~~~iL~~~~~~~~~Ifn 324 (352)
T COG0407 262 -TGFDVLGVDWRVD--LKEA----KKRLGDKVALQGNLD----P---ALLY---APPEAIKEEVKRILEDGGDGSGYIFN 324 (352)
T ss_pred -cCCcEEeeccccC--HHHH----HHHhCCCceEEeccC----h---Hhhc---CCHHHHHHHHHHHHHHhccCCCceec
Confidence 3689999888743 2222 222222255665542 1 0011 13566777788888776654 22
Q ss_pred ecCC----CchHHHHHHHHHHcCCC
Q 019107 316 GCCR----TTPNTIKAISRVLSNKS 336 (346)
Q Consensus 316 GCCG----t~P~hI~al~~~~~~~~ 336 (346)
=-|| |.|++++++-+.++...
T Consensus 325 lGhGI~P~tp~e~v~~lve~v~~~~ 349 (352)
T COG0407 325 LGHGILPETPPENVKALVEAVHEYS 349 (352)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHhc
Confidence 2355 67899999999887654
No 298
>PRK00208 thiG thiazole synthase; Reviewed
Probab=56.69 E-value=1.7e+02 Score=27.39 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=21.2
Q ss_pred CCChHHHHHHHHHHHHhhcceeeccccccCH
Q 019107 51 VSSPHLVRKVHLDYLDAGANIIITASYQATI 81 (346)
Q Consensus 51 l~~Pe~V~~iH~~yl~AGA~iI~TnTy~as~ 81 (346)
+.+++.+++. ...+|++|++.+.-+.+.
T Consensus 20 y~s~~~~~~a---i~asg~~ivTvalrR~~~ 47 (250)
T PRK00208 20 YPSPQVMQEA---IEASGAEIVTVALRRVNL 47 (250)
T ss_pred CCCHHHHHHH---HHHhCCCeEEEEEEeecC
Confidence 4677777665 567999999998876553
No 299
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=56.62 E-value=1.8e+02 Score=27.66 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEccC
Q 019107 161 VSLETLKEFHRRRVLILANSGADLIAFETI 190 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~ 190 (346)
.+.++++..-+..+..+...|| ..+|..
T Consensus 65 ~t~e~l~~~~~~~~~e~~~~Gv--~y~E~r 92 (324)
T TIGR01430 65 RTEDDFKRLAYEYVEKAAKDGV--VYAEVF 92 (324)
T ss_pred CCHHHHHHHHHHHHHHHHHcCC--EEEEEE
Confidence 3678888888888888888998 566743
No 300
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=56.51 E-value=1.8e+02 Score=27.53 Aligned_cols=148 Identities=18% Similarity=0.100 Sum_probs=78.5
Q ss_pred ChHHHHHHHHHHHHhh-cceeecc-ccccCHHhHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCC
Q 019107 53 SPHLVRKVHLDYLDAG-ANIIITA-SYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRIS 130 (346)
Q Consensus 53 ~Pe~V~~iH~~yl~AG-A~iI~Tn-Ty~as~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~ 130 (346)
+.+.+++.-+.++++| ++-|..+ |-+-. . -++.++-.++++.+++.+ .
T Consensus 19 D~~~~~~~i~~~i~~G~v~gi~~~GstGE~-~-----~Lt~eEr~~~~~~~~~~~------------------------~ 68 (290)
T TIGR00683 19 NEKGLRQIIRHNIDKMKVDGLYVGGSTGEN-F-----MLSTEEKKEIFRIAKDEA------------------------K 68 (290)
T ss_pred CHHHHHHHHHHHHhCCCcCEEEECCccccc-c-----cCCHHHHHHHHHHHHHHh------------------------C
Confidence 5677777777889999 9976544 32211 1 134455556655555432 1
Q ss_pred CCCcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCC-----CHHHHHHHHHHHHH
Q 019107 131 SRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIP-----NKLEAKAYAELLEE 205 (346)
Q Consensus 131 ~~~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~-----~~~E~~a~~~a~~~ 205 (346)
++-.+|+| +|.. +.++..+ +++...+.|+|.+++= .| +.+|+....+.+.+
T Consensus 69 ~~~pvi~g-v~~~------------------~t~~~i~----la~~a~~~Gad~v~v~-~P~y~~~~~~~i~~yf~~v~~ 124 (290)
T TIGR00683 69 DQIALIAQ-VGSV------------------NLKEAVE----LGKYATELGYDCLSAV-TPFYYKFSFPEIKHYYDTIIA 124 (290)
T ss_pred CCCcEEEe-cCCC------------------CHHHHHH----HHHHHHHhCCCEEEEe-CCcCCCCCHHHHHHHHHHHHh
Confidence 22234555 3321 3344433 5666777899999873 34 55666666665543
Q ss_pred hCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCC--hhhHHHHH
Q 019107 206 EGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTS--PRFIHGLI 260 (346)
Q Consensus 206 ~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~--p~~~~~~l 260 (346)
...++|+++-=.. ..+-..-+.+ .+..+.+. +-.+||-.++ +..+..++
T Consensus 125 ~~~~lpv~lYn~P---~~tg~~l~~~-~i~~L~~~--pnv~giK~s~~d~~~~~~~~ 175 (290)
T TIGR00683 125 ETGGLNMIVYSIP---FLTGVNMGIE-QFGELYKN--PKVLGVKFTAGDFYLLERLK 175 (290)
T ss_pred hCCCCCEEEEeCc---cccccCcCHH-HHHHHhcC--CCEEEEEeCCCCHHHHHHHH
Confidence 2225899854211 1111222333 34444332 4577777653 45554443
No 301
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=56.45 E-value=2.1e+02 Score=28.20 Aligned_cols=100 Identities=13% Similarity=0.039 Sum_probs=56.6
Q ss_pred HHHHHhCCCCEEEEc-----------cCCCHHHHH----HHHHHHHHhCCCCcEEEE--EEEcCCCcccCCCCHHHHHHH
Q 019107 174 VLILANSGADLIAFE-----------TIPNKLEAK----AYAELLEEEGITIPAWFS--FNSKDGINVVSGDSILECASI 236 (346)
Q Consensus 174 i~~l~~~gvD~i~~E-----------T~~~~~E~~----a~~~a~~~~~~~~pv~is--~~~~~~~~l~~G~~~~~av~~ 236 (346)
++...++|+|.+.+- .-.+.+|+. .+++.+++.+..+-+.++ |.|++.++. +-+-+.+.++.
T Consensus 127 ie~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~-~~~~l~~~~~~ 205 (347)
T PLN02746 127 FEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPV-PPSKVAYVAKE 205 (347)
T ss_pred HHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCC-CHHHHHHHHHH
Confidence 444566899987654 223444444 466777777632332343 444544442 22334455555
Q ss_pred hhcCCCceEEEECCC----ChhhHHHHHHHHhhhcC-CcEEEee
Q 019107 237 ADSCEQVVAVGINCT----SPRFIHGLILSVRKVTS-KPVIIYP 275 (346)
Q Consensus 237 ~~~~~~~~avGvNC~----~p~~~~~~l~~l~~~~~-~pl~vyp 275 (346)
+.+ .+++-|.+-=+ .|..+..+++.+++..+ .|+.+..
T Consensus 206 ~~~-~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H~ 248 (347)
T PLN02746 206 LYD-MGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHF 248 (347)
T ss_pred HHH-cCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 544 46666555433 49999999999987655 3565543
No 302
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=56.43 E-value=1.8e+02 Score=27.60 Aligned_cols=178 Identities=17% Similarity=0.117 Sum_probs=95.3
Q ss_pred EEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEE-----EEccCCC--HHHHHHHHHHHHHhC
Q 019107 135 LVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLI-----AFETIPN--KLEAKAYAELLEEEG 207 (346)
Q Consensus 135 ~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i-----~~ET~~~--~~E~~a~~~a~~~~~ 207 (346)
++.| |=|-...++. ++-.-+.+.+.+|-+..++.+.+ .|.++ ++|.... +.-++.+++.+++.+
T Consensus 16 lcvG-lDP~~~~l~~-------~~~~~~~~~~~~f~~~ivd~~~~-~v~~vK~gla~f~~~G~~G~~~l~~~i~~l~~~g 86 (278)
T PRK00125 16 LCVG-LDPHPSLLPA-------WGLSGDADGLFEFCRIIVDATAD-LVAAFKPQIAYFEAHGAEGLAQLERTIAYLREAG 86 (278)
T ss_pred EEEE-ECCChHhccc-------ccccccHHHHHHHHHHHHHhcCC-cccEEeccHHHHHhcCchhhhHHHHHHHHHHHCC
Confidence 5555 6776655542 22123567788888888888764 33333 3454421 112334677777765
Q ss_pred CCCcEEEEEEEcCCCcccCCCCHHHHHHHhhc-CCCceEEEECCC-ChhhHHHHHHHHhhhcCCcEEE---eeCCC--Cc
Q 019107 208 ITIPAWFSFNSKDGINVVSGDSILECASIADS-CEQVVAVGINCT-SPRFIHGLILSVRKVTSKPVII---YPNSG--ET 280 (346)
Q Consensus 208 ~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~-~~~~~avGvNC~-~p~~~~~~l~~l~~~~~~pl~v---ypN~g--~~ 280 (346)
+||++-+-..|=+ .+....++.+.. ..+++++-||+. +.+.+.++++...+. .+-+.| .-|.+ .+
T Consensus 87 --~~VilD~K~~DI~-----nTv~~ya~a~~~~~~g~DavTVhp~~G~d~l~~~~~~~~~~-~k~vfVlvlTSnp~s~~l 158 (278)
T PRK00125 87 --VLVIADAKRGDIG-----STAEAYAKAAFESPLEADAVTVSPYMGFDSLEPYLEYAEEH-GKGVFVLCRTSNPGGSDL 158 (278)
T ss_pred --CcEEEEeecCChH-----HHHHHHHHHHhcCccCCcEEEECCcCCHHHHHHHHHHHHhc-CCEEEEEEeCCCCCHHHH
Confidence 8888766553322 344555555442 357999999996 678888887765442 222222 23333 11
Q ss_pred cccccccccccCCCC-hHHHHHHHHHHHH---cCCeEEe-ecCCCchHHHHHHHHHHcC
Q 019107 281 YNAELKKWVESTGVR-DEDFVSYIGKWRD---AGASLFG-GCCRTTPNTIKAISRVLSN 334 (346)
Q Consensus 281 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~G~~ivG-GCCGt~P~hI~al~~~~~~ 334 (346)
.+ .......+ -+...+.+.+|.+ .....+| ==|.|-|+.++.|++.+..
T Consensus 159 q~-----~~~~~~~~l~~~V~~~a~~~~~~~~~~~g~~G~VVgaT~p~e~~~iR~~~~~ 212 (278)
T PRK00125 159 QF-----LRTADGRPLYQHVADLAAALNNLGNCGYGSIGLVVGATFPPELAAVRKILGG 212 (278)
T ss_pred Hh-----hhccCCCcHHHHHHHHHHHHhccccCCCCCCEEEECCCCHHHHHHHHHhCCC
Confidence 00 00000001 1234444444443 1122244 3445779999999988643
No 303
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=56.07 E-value=2.1e+02 Score=28.21 Aligned_cols=65 Identities=18% Similarity=0.146 Sum_probs=34.4
Q ss_pred HHHHHHhCCCCEEEEcc---------------CCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHh
Q 019107 173 RVLILANSGADLIAFET---------------IPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIA 237 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET---------------~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~ 237 (346)
+++.|.++|+|.+-+-. +|-+.-+..+.+++++. ..|||. |.+- ..-.+++..+
T Consensus 162 ~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~--~v~iIA-----DGGi----~~sGDi~KAl 230 (352)
T PF00478_consen 162 GAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDY--GVPIIA-----DGGI----RTSGDIVKAL 230 (352)
T ss_dssp HHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCT--TSEEEE-----ESS-----SSHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhc--cCceee-----cCCc----Ccccceeeee
Confidence 45558889999998663 23222222333444444 388872 1221 2335777766
Q ss_pred hcCCCceEEEECC
Q 019107 238 DSCEQVVAVGINC 250 (346)
Q Consensus 238 ~~~~~~~avGvNC 250 (346)
. .++++|++-=
T Consensus 231 a--~GAd~VMlG~ 241 (352)
T PF00478_consen 231 A--AGADAVMLGS 241 (352)
T ss_dssp H--TT-SEEEEST
T ss_pred e--ecccceeech
Confidence 4 3667777653
No 304
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=55.92 E-value=1.6e+02 Score=26.66 Aligned_cols=100 Identities=11% Similarity=0.172 Sum_probs=58.4
Q ss_pred HHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEEC---
Q 019107 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGIN--- 249 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvN--- 249 (346)
|++...++|++|++ -|.+.+ .+++.+++.+ +|++ +.-.++.|+....+. +.+.|=+-
T Consensus 68 ~a~~ai~aGA~Fiv---SP~~~~--~vi~~a~~~~--i~~i-----------PG~~TptEi~~A~~~--Ga~~vK~FPa~ 127 (201)
T PRK06015 68 QFEDAAKAGSRFIV---SPGTTQ--ELLAAANDSD--VPLL-----------PGAATPSEVMALREE--GYTVLKFFPAE 127 (201)
T ss_pred HHHHHHHcCCCEEE---CCCCCH--HHHHHHHHcC--CCEe-----------CCCCCHHHHHHHHHC--CCCEEEECCch
Confidence 55667789999998 455543 4666777765 8887 223577888887754 44554443
Q ss_pred CC-ChhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeEEee
Q 019107 250 CT-SPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGG 316 (346)
Q Consensus 250 C~-~p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivGG 316 (346)
.. +|.++..+-.-+. ..|+ .|-.| .+++ .+.+|+++|+...||
T Consensus 128 ~~GG~~yikal~~plp---~~~l--~ptGG---------------V~~~----n~~~~l~ag~~~~~g 171 (201)
T PRK06015 128 QAGGAAFLKALSSPLA---GTFF--CPTGG---------------ISLK----NARDYLSLPNVVCVG 171 (201)
T ss_pred hhCCHHHHHHHHhhCC---CCcE--EecCC---------------CCHH----HHHHHHhCCCeEEEE
Confidence 23 3554444422221 2333 35554 2333 445699987766665
No 305
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=55.81 E-value=1.7e+02 Score=27.13 Aligned_cols=76 Identities=20% Similarity=0.209 Sum_probs=43.8
Q ss_pred HHHHHhCCCCEEEEccCCCH-----HHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCC-CCHHHHHHHhhcCCCceEEE
Q 019107 174 VLILANSGADLIAFETIPNK-----LEAKAYAELLEEEGITIPAWFSFNSKDGINVVSG-DSILECASIADSCEQVVAVG 247 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~-----~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G-~~~~~av~~~~~~~~~~avG 247 (346)
++.+.+.|+|-|.+=-+... .....+.++.+.. ..|++++= | .+++++.+.+. .+++.+-
T Consensus 36 a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~--~~pv~~gG----------Gi~s~~d~~~l~~--~G~~~vv 101 (258)
T PRK01033 36 VRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASEC--FMPLCYGG----------GIKTLEQAKKIFS--LGVEKVS 101 (258)
T ss_pred HHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHhC--CCCEEECC----------CCCCHHHHHHHHH--CCCCEEE
Confidence 44455678877764322211 1233344444443 48887543 2 35677666653 4788888
Q ss_pred ECCC---ChhhHHHHHHHH
Q 019107 248 INCT---SPRFIHGLILSV 263 (346)
Q Consensus 248 vNC~---~p~~~~~~l~~l 263 (346)
+|+. .|+.+..+++.+
T Consensus 102 igs~~~~~~~~~~~~~~~~ 120 (258)
T PRK01033 102 INTAALEDPDLITEAAERF 120 (258)
T ss_pred EChHHhcCHHHHHHHHHHh
Confidence 9985 477777776665
No 306
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=55.80 E-value=36 Score=31.41 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhCCCCEEEEccCC---CHHHHHHHHHHHHHhCCCCcEEEE
Q 019107 168 EFHRRRVLILANSGADLIAFETIP---NKLEAKAYAELLEEEGITIPAWFS 215 (346)
Q Consensus 168 ~~~~~~i~~l~~~gvD~i~~ET~~---~~~E~~a~~~a~~~~~~~~pv~is 215 (346)
..|.+++..++++|.|+++ |... +.++.+.+++++++.+ .++++.
T Consensus 48 ~~H~e~a~~aL~aGkhVl~-~s~gAlad~e~~~~l~~aA~~~g--~~l~i~ 95 (229)
T TIGR03855 48 EAVKEYAEKILKNGKDLLI-MSVGALADRELRERLREVARSSG--RKVYIP 95 (229)
T ss_pred HHHHHHHHHHHHCCCCEEE-ECCcccCCHHHHHHHHHHHHhcC--CEEEEC
Confidence 3688999999999999998 5542 7788999999999876 777665
No 307
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=55.62 E-value=1.8e+02 Score=27.18 Aligned_cols=126 Identities=21% Similarity=0.211 Sum_probs=67.7
Q ss_pred HHHHHHhCCCCEEE-EccCCC------HHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCC---HHHHHHHhhcCCC
Q 019107 173 RVLILANSGADLIA-FETIPN------KLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDS---ILECASIADSCEQ 242 (346)
Q Consensus 173 ~i~~l~~~gvD~i~-~ET~~~------~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~---~~~av~~~~~~~~ 242 (346)
.++...+.|+|.+- ..-+.+ .+++..+++++++.+ .|+++-. ..+..++.++.+ +..+++.+.. .+
T Consensus 98 ~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g--~pl~vi~-~~~g~~~e~~~~~~~i~~a~~~a~e-~G 173 (267)
T PRK07226 98 TVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWG--MPLLAMM-YPRGPGIKNEYDPEVVAHAARVAAE-LG 173 (267)
T ss_pred cHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcC--CcEEEEE-ecCCCccCCCccHHHHHHHHHHHHH-HC
Confidence 35556778887553 222222 335556666666655 8888743 222233323333 3333443333 47
Q ss_pred ceEEEECCCChhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeEEeecCCCc
Q 019107 243 VVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTT 321 (346)
Q Consensus 243 ~~avGvNC~~p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivGGCCGt~ 321 (346)
++.|=.+=.. + ..+++++.+..+.|+.+ -+|... -+.+++.+.+.+.++.|+. |=|+|..
T Consensus 174 AD~vKt~~~~-~--~~~l~~~~~~~~ipV~a--~GGi~~------------~~~~~~l~~v~~~~~aGA~--Gis~gr~ 233 (267)
T PRK07226 174 ADIVKTNYTG-D--PESFREVVEGCPVPVVI--AGGPKT------------DTDREFLEMVRDAMEAGAA--GVAVGRN 233 (267)
T ss_pred CCEEeeCCCC-C--HHHHHHHHHhCCCCEEE--EeCCCC------------CCHHHHHHHHHHHHHcCCc--EEehhhh
Confidence 7887665221 1 24445544444577543 333200 1246788888888999998 7788754
No 308
>PRK09234 fbiC FO synthase; Reviewed
Probab=55.54 E-value=3.3e+02 Score=30.23 Aligned_cols=38 Identities=18% Similarity=0.328 Sum_probs=25.5
Q ss_pred ChHHHHHHHHHHHHhhcc-eeecc------ccccCHHhHHhCCCC
Q 019107 53 SPHLVRKVHLDYLDAGAN-IIITA------SYQATIQGFEAKGFS 90 (346)
Q Consensus 53 ~Pe~V~~iH~~yl~AGA~-iI~Tn------Ty~as~~~l~~~g~~ 90 (346)
.||.|.+.-+.-.+.|+. ++.|. .|...+++|...|++
T Consensus 103 s~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~ 147 (843)
T PRK09234 103 SPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYD 147 (843)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccc
Confidence 567788888888889987 33332 233345667777885
No 309
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=55.35 E-value=68 Score=31.11 Aligned_cols=75 Identities=23% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCceEEEECCCC--------------------------hhhHHHHHHHHhhhc--CCcEEEeeCCCCcc
Q 019107 230 ILECASIADSCEQVVAVGINCTS--------------------------PRFIHGLILSVRKVT--SKPVIIYPNSGETY 281 (346)
Q Consensus 230 ~~~av~~~~~~~~~~avGvNC~~--------------------------p~~~~~~l~~l~~~~--~~pl~vypN~g~~~ 281 (346)
+.+++..+.. .+.++|-|||.+ +..+..+++.+++.. +.|+++.-|.
T Consensus 151 ~~~aA~ra~~-aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~---- 225 (338)
T cd04733 151 FAHAARLAQE-AGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNS---- 225 (338)
T ss_pred HHHHHHHHHH-cCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcH----
Q ss_pred ccccccccccCCCChHHHHHHHHHHHHcCCeEE
Q 019107 282 NAELKKWVESTGVRDEDFVSYIGKWRDAGASLF 314 (346)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iv 314 (346)
........++++..++++.+.+.|+.+|
T Consensus 226 -----~~~~~~g~~~eea~~ia~~Le~~Gvd~i 253 (338)
T cd04733 226 -----ADFQRGGFTEEDALEVVEALEEAGVDLV 253 (338)
T ss_pred -----HHcCCCCCCHHHHHHHHHHHHHcCCCEE
No 310
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=55.28 E-value=73 Score=32.75 Aligned_cols=67 Identities=9% Similarity=0.081 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhCCCCEEEEccC-CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEE
Q 019107 169 FHRRRVLILANSGADLIAFETI-PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVG 247 (346)
Q Consensus 169 ~~~~~i~~l~~~gvD~i~~ET~-~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avG 247 (346)
...++++.|.++|||.|++-+- .+..-..-+++.+++...++||++.+ +.+.+.+...++ .++++|.
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~----------~~t~~~~~~l~~--~G~d~i~ 292 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGN----------VVSAEGVRDLLE--AGANIIK 292 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEec----------cCCHHHHHHHHH--hCCCEEE
Confidence 4557899999999999999843 44445555566677653368999843 345555555554 3666654
No 311
>PF02515 CoA_transf_3: CoA-transferase family III; InterPro: IPR003673 CoA-transferases are found in organisms from all kingdoms of life. They catalyse reversible transfer reactions of coenzyme A groups from CoA-thioesters to free acids. There are at least three families of CoA-transferases, which differ in sequence and reaction mechanism: Family I consists of CoA-transferases for 3-oxoacids (2.8.3.5 from EC, 2.8.3.6 from EC), short-chain fatty acids (2.8.3.8 from EC, 2.8.3.9 from EC) and glutaconate (2.8.3.12 from EC). Most use succinyl-CoA or acetyl-CoA as CoA donors. Family II consists of the homodimeric alpha-subunits of citrate lyase and citramalate lyase (2.8.3.10 from EC, 2.8.3.11 from EC). These enzymes catalyse the transfer of acyl carrier protein (ACP) with a covalently bound CoA derivative, but can accept free CoA thioesters as well. Family III consists of formyl-CoA:oxalate CoA-transferase [], succinyl-CoA:(R)-benzylsuccinate CoA-transferase [], (E)-cinnamoyl-CoA:(R)-phenyllactate CoA-transferase [], and butyrobetainyl-CoA:(R)-carnitine CoA-transferase []. These CoA-transferases occur in prokaryotes and eukaryotes, and catalyse CoA-transfer reactions in a highly substrate- and stereo-specific manner []. This entry represents family III CoA-transferases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1PT7_B 1PT8_A 1PQY_A 1Q7E_A 1Q6Y_A 1PT5_A 1XK6_B 1XK7_C 1XVT_A 1XVU_A ....
Probab=55.21 E-value=66 Score=28.46 Aligned_cols=39 Identities=23% Similarity=0.187 Sum_probs=23.4
Q ss_pred CCChHHHHHHHHHHHHhhcceeeccccccCHHhHHhCCCCHHHH
Q 019107 51 VSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEA 94 (346)
Q Consensus 51 l~~Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~~g~~~~~~ 94 (346)
+.+|+-.+.+++ +-+.|||++.|-= +..+.+.|++.+.+
T Consensus 5 l~~~~gr~~l~~--L~~~ADV~i~n~r---pg~~~~lGl~~~~l 43 (191)
T PF02515_consen 5 LKSPEGRAALRR--LLATADVVIENFR---PGVLERLGLDYEAL 43 (191)
T ss_dssp TTSHHHHHHHHH--HHHT-SEEEEESS---TTHHHHTT-SHHHH
T ss_pred CcCHHHHHHHHH--HHHhCCEEEECCc---hhhhHhcCCCHHHH
Confidence 566665444433 3457999998853 55677889986543
No 312
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=55.11 E-value=2.7e+02 Score=29.44 Aligned_cols=48 Identities=25% Similarity=0.353 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHH---HHhCCCCcEEEEEEEc
Q 019107 171 RRRVLILANSGADLIAFETIPNKLEAKAYAELL---EEEGITIPAWFSFNSK 219 (346)
Q Consensus 171 ~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~---~~~~~~~pv~is~~~~ 219 (346)
-+|+..|.++|+|++-+ |+|+.++++++-... ++.|.+.|++.-+.|+
T Consensus 48 v~Qi~~L~~aGceiVRv-tvp~~~~A~al~~I~~~L~~~g~~iPLVADIHF~ 98 (606)
T PRK00694 48 VRQICALQEWGCDIVRV-TVQGLKEAQACEHIKERLIQQGISIPLVADIHFF 98 (606)
T ss_pred HHHHHHHHHcCCCEEEE-cCCCHHHHHhHHHHHHHHhccCCCCCEEeecCCC
Confidence 35889999999999874 789999988776543 3356679999888773
No 313
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=54.85 E-value=1.4e+02 Score=28.28 Aligned_cols=78 Identities=12% Similarity=0.006 Sum_probs=49.3
Q ss_pred HHHHHHhCCCCEEEEcc---CCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEEC
Q 019107 173 RVLILANSGADLIAFET---IPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGIN 249 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET---~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvN 249 (346)
.++.+...|.|++++.. --+..++...+.+++..+ .+.+|-+. ++ +...+-+.++ .|+.+|.+=
T Consensus 31 ~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g--~~~lVRvp--------~~-~~~~i~r~LD--~GA~GIivP 97 (267)
T PRK10128 31 MAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYA--SQPVIRPV--------EG-SKPLIKQVLD--IGAQTLLIP 97 (267)
T ss_pred HHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcC--CCeEEECC--------CC-CHHHHHHHhC--CCCCeeEec
Confidence 35567779999999874 347778888888888765 66665552 12 2233333443 366777776
Q ss_pred CC-ChhhHHHHHHHH
Q 019107 250 CT-SPRFIHGLILSV 263 (346)
Q Consensus 250 C~-~p~~~~~~l~~l 263 (346)
.+ +++....+++..
T Consensus 98 ~V~saeeA~~~V~a~ 112 (267)
T PRK10128 98 MVDTAEQARQVVSAT 112 (267)
T ss_pred CcCCHHHHHHHHHhc
Confidence 66 466666665543
No 314
>PRK00784 cobyric acid synthase; Provisional
Probab=54.70 E-value=99 Score=31.72 Aligned_cols=97 Identities=18% Similarity=0.123 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHH------HHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHH
Q 019107 161 VSLETLKEFHRRRVLILANSGADLIAFETIPNKLEA------KAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECA 234 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~------~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av 234 (346)
++.+.+.+.|+ .+. .+.|++++|-...+.|. ....++++..+ .||++-..+. .|.++..+.
T Consensus 110 ~~~~~I~~~~~----~l~-~~~D~vIVEGaGg~~~~~L~~~~~~~~dlak~l~--~PVILV~~~~------~g~~~~~i~ 176 (488)
T PRK00784 110 RLLEAVLESLD----RLA-AEYDVVVVEGAGSPAEINLRDRDIANMGFAEAAD--APVILVADID------RGGVFASLV 176 (488)
T ss_pred hhHHHHHHHHH----HHH-hcCCEEEEECCCCccccCcccCCchhHHHHHHcC--CCEEEEEeCC------cCcHHHHHH
Confidence 45566665553 233 47899999965222221 33567778765 9999865442 233455443
Q ss_pred ---HHhhcC--CCceEEEECCCChh--hHHHHHHHHhhhcCCc
Q 019107 235 ---SIADSC--EQVVAVGINCTSPR--FIHGLILSVRKVTSKP 270 (346)
Q Consensus 235 ---~~~~~~--~~~~avGvNC~~p~--~~~~~l~~l~~~~~~p 270 (346)
..+... ..+.++=+|++.++ .+....+.+.+....|
T Consensus 177 ~~~~~l~~~~~~~i~GvI~N~v~~~~~~~~~~~~~l~~~~gip 219 (488)
T PRK00784 177 GTLALLPPEERARVKGFIINKFRGDISLLEPGLDWLEELTGVP 219 (488)
T ss_pred HHHHhcChhhCCcEEEEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 233311 25778999998643 2344444454444455
No 315
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=54.46 E-value=2e+02 Score=27.34 Aligned_cols=111 Identities=13% Similarity=0.148 Sum_probs=65.7
Q ss_pred ChHHHHHHHHHHHHhhcceeeccccccCHHhHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCC
Q 019107 53 SPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSR 132 (346)
Q Consensus 53 ~Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~ 132 (346)
+.+.+++.-+-+++.|++-|..+--..-... ++.++-.++++.+++.+ .++
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~-----Ls~~Er~~l~~~~~~~~------------------------~g~ 69 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISVGGTSGEPGS-----LTLEERKQAIENAIDQI------------------------AGR 69 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCccccc-----CCHHHHHHHHHHHHHHh------------------------CCC
Confidence 5678888888889999997665543322222 34455556666555432 123
Q ss_pred CcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccC----CCHHHHHHHHHHHHHhCC
Q 019107 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETI----PNKLEAKAYAELLEEEGI 208 (346)
Q Consensus 133 ~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~----~~~~E~~a~~~a~~~~~~ 208 (346)
-.+|+| +|. .+.++..+ +++...+.|+|.+++-+= ++.+++....+.+.+...
T Consensus 70 ~pvi~g-v~~------------------~~t~~ai~----~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~ 126 (294)
T TIGR02313 70 IPFAPG-TGA------------------LNHDETLE----LTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVP 126 (294)
T ss_pred CcEEEE-CCc------------------chHHHHHH----HHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhcc
Confidence 345666 222 13344433 455667789999987642 355666666665554321
Q ss_pred CCcEEEE
Q 019107 209 TIPAWFS 215 (346)
Q Consensus 209 ~~pv~is 215 (346)
++|+++-
T Consensus 127 ~lpv~iY 133 (294)
T TIGR02313 127 DFPIIIY 133 (294)
T ss_pred CCCEEEE
Confidence 5898865
No 316
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=54.38 E-value=2.2e+02 Score=28.69 Aligned_cols=62 Identities=16% Similarity=0.068 Sum_probs=32.5
Q ss_pred HHHHHhCCCCEEEEc----c-----------CCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhh
Q 019107 174 VLILANSGADLIAFE----T-----------IPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (346)
Q Consensus 174 i~~l~~~gvD~i~~E----T-----------~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~ 238 (346)
++.+.+.|+|+|..- + .|.+.-+..+.+++++.+ .||+. ++-+.+ ..++++.+.
T Consensus 208 a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~--vpVIA------dGGI~~---~~Di~KALa 276 (404)
T PRK06843 208 ALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTN--ICIIA------DGGIRF---SGDVVKAIA 276 (404)
T ss_pred HHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcC--CeEEE------eCCCCC---HHHHHHHHH
Confidence 344666899998653 1 133333333445455543 88773 233333 356666664
Q ss_pred cCCCceEEEE
Q 019107 239 SCEQVVAVGI 248 (346)
Q Consensus 239 ~~~~~~avGv 248 (346)
.++++|.+
T Consensus 277 --lGA~aVmv 284 (404)
T PRK06843 277 --AGADSVMI 284 (404)
T ss_pred --cCCCEEEE
Confidence 35555554
No 317
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=54.31 E-value=88 Score=30.07 Aligned_cols=63 Identities=11% Similarity=0.121 Sum_probs=43.5
Q ss_pred HHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECC
Q 019107 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (346)
Q Consensus 172 ~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC 250 (346)
+|+....++|+|+|++..| ++++++.+++.++. .+.+..+ .|-++..+.+++. .+++.|-+-.
T Consensus 216 eea~eA~~aGaDiImLDnm-spe~l~~av~~~~~-----~~~lEaS--------GGIt~~ni~~yA~--tGVD~IS~ga 278 (294)
T PRK06978 216 AQLETALAHGAQSVLLDNF-TLDMMREAVRVTAG-----RAVLEVS--------GGVNFDTVRAFAE--TGVDRISIGA 278 (294)
T ss_pred HHHHHHHHcCCCEEEECCC-CHHHHHHHHHhhcC-----CeEEEEE--------CCCCHHHHHHHHh--cCCCEEEeCc
Confidence 3444566799999999998 78888888876542 2333332 4677777777654 5788877766
No 318
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=53.83 E-value=1.7e+02 Score=28.41 Aligned_cols=91 Identities=21% Similarity=0.331 Sum_probs=55.3
Q ss_pred CC-CEEEEccCCCHHHHHHHHHH---HHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCC----
Q 019107 181 GA-DLIAFETIPNKLEAKAYAEL---LEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTS---- 252 (346)
Q Consensus 181 gv-D~i~~ET~~~~~E~~a~~~a---~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~---- 252 (346)
|. |++.-|.+....-+..--+- +.....+.|+.+.+.-. +-+.+.+++..+.. .+++.|=+||..
T Consensus 34 ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~gs------dp~~l~eaA~~~~~-~g~~~IdlN~GCP~~~ 106 (323)
T COG0042 34 GAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLGGS------DPELLAEAAKIAEE-LGADIIDLNCGCPSPK 106 (323)
T ss_pred CCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEecCC------CHHHHHHHHHHHHh-cCCCEEeeeCCCChHH
Confidence 44 99999988765433322111 11112257777777321 11234566666655 458999999963
Q ss_pred -------------hhhHHHHHHHHhhhc-CCcEEEeeCCC
Q 019107 253 -------------PRFIHGLILSVRKVT-SKPVIIYPNSG 278 (346)
Q Consensus 253 -------------p~~~~~~l~~l~~~~-~~pl~vypN~g 278 (346)
|+.+..+++.+.++. ++|+-|.--.|
T Consensus 107 V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG 146 (323)
T COG0042 107 VVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLG 146 (323)
T ss_pred hcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecc
Confidence 345666777888877 49998876555
No 319
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=53.74 E-value=1.9e+02 Score=26.93 Aligned_cols=67 Identities=18% Similarity=0.177 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhCCCCEEEEc-cCC--CHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhc
Q 019107 169 FHRRRVLILANSGADLIAFE-TIP--NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS 239 (346)
Q Consensus 169 ~~~~~i~~l~~~gvD~i~~E-T~~--~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~ 239 (346)
++.+.++.+.+.|+|.|.+- |+. ++.++..+++.+++.-.+.++-+.|.+.++. |..++.++..++.
T Consensus 144 ~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~----GlA~An~laAi~a 213 (268)
T cd07940 144 FLIEVVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDL----GLAVANSLAAVEA 213 (268)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCc----chHHHHHHHHHHh
Confidence 44456666777899998764 433 6778888898888742111267788887765 5556666666653
No 320
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=53.56 E-value=81 Score=31.89 Aligned_cols=71 Identities=14% Similarity=0.178 Sum_probs=50.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcc---CCCHH-HHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHH
Q 019107 157 YGDAVSLETLKEFHRRRVLILANSGADLIAFET---IPNKL-EAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILE 232 (346)
Q Consensus 157 ~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET---~~~~~-E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~ 232 (346)
++...+.+.+++.++- .+.+.+|..|++.. +.+.+ =++++++++++.+.++|++|-+ .|+..++
T Consensus 324 ~GG~a~~~~v~~a~~i---i~~d~~vk~iliNIfGGI~~cd~iA~gii~a~~~~~~~~pivvRl---------~Gtn~~~ 391 (422)
T PLN00124 324 VGGNASEQQVVEAFKI---LTSDDKVKAILVNIFGGIMKCDVIASGIVNAAKQVGLKVPLVVRL---------EGTNVDQ 391 (422)
T ss_pred cCCCCCHHHHHHHHHH---HhcCCCCcEEEEEecCCccchHHHHHHHHHHHHhcCCCCcEEEEc---------CCCCHHH
Confidence 3334577888887762 35578999998643 33444 3467788888877789999866 7888888
Q ss_pred HHHHhhc
Q 019107 233 CASIADS 239 (346)
Q Consensus 233 av~~~~~ 239 (346)
..+.+..
T Consensus 392 g~~~l~~ 398 (422)
T PLN00124 392 GKRILKE 398 (422)
T ss_pred HHHHHHh
Confidence 8887764
No 321
>PRK06498 isocitrate lyase; Provisional
Probab=53.39 E-value=28 Score=35.76 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=29.3
Q ss_pred HhCCCCEEEEcc-CCCHHHHHHHHHHHHHhCCCCcEE
Q 019107 178 ANSGADLIAFET-IPNKLEAKAYAELLEEEGITIPAW 213 (346)
Q Consensus 178 ~~~gvD~i~~ET-~~~~~E~~a~~~a~~~~~~~~pv~ 213 (346)
..+++|+||+|| -|++.+++..++.+++.-+++...
T Consensus 342 ~apyADLlW~ET~~P~~~qa~~fa~~Ir~~~P~~~La 378 (531)
T PRK06498 342 LQNGADLLWIETEKPHVAQIAGMVNRIREVVPNAKLV 378 (531)
T ss_pred hcCcCcEEEecCCCCCHHHHHHHHHHHHHHCCCCeEE
Confidence 358999999998 899999999999999854344443
No 322
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=53.37 E-value=2.4e+02 Score=28.02 Aligned_cols=85 Identities=19% Similarity=0.255 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHHHH----hCC--CCEEEEccCCC-------HHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCC
Q 019107 162 SLETLKEFHRRRVLILA----NSG--ADLIAFETIPN-------KLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGD 228 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~----~~g--vD~i~~ET~~~-------~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~ 228 (346)
+.++..+.+.+-++.+. +.| |. |++|.+|+ +..+..+++.+++.+ .|=.+.++++-.-...-|.
T Consensus 148 d~~~a~~~~~e~L~~lae~A~~~G~GV~-laLEp~p~~~~~~~ll~T~~~al~li~~v~--~pn~vgl~lDvgH~~~~g~ 224 (382)
T TIGR02631 148 DVRAALDRMREALNLLAAYAEDQGYGLR-FALEPKPNEPRGDILLPTVGHALAFIETLE--RPELFGLNPETGHEQMAGL 224 (382)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCCcE-EEEccCCCCCCcceecCCHHHHHHHHHHcC--CccceeEEEechhHhhcCC
Confidence 45666666666655553 333 54 66788764 223444555556654 4443444444333345788
Q ss_pred CHHHHHHHhhcCCCceEEEEC
Q 019107 229 SILECASIADSCEQVVAVGIN 249 (346)
Q Consensus 229 ~~~~av~~~~~~~~~~avGvN 249 (346)
++.+++........+..|=+|
T Consensus 225 n~~~~i~~~l~~~kl~Hvhln 245 (382)
T TIGR02631 225 NFTHGIAQALWAGKLFHIDLN 245 (382)
T ss_pred CHHHHHHHHHhCCCEEEEecC
Confidence 998888744222234455555
No 323
>PRK09389 (R)-citramalate synthase; Provisional
Probab=53.24 E-value=2.7e+02 Score=28.63 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhCCCCEEEE-ccCC--CHHHHHHHHHHHHHhCCCCcEEEEEEEcCCC
Q 019107 168 EFHRRRVLILANSGADLIAF-ETIP--NKLEAKAYAELLEEEGITIPAWFSFNSKDGI 222 (346)
Q Consensus 168 ~~~~~~i~~l~~~gvD~i~~-ET~~--~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~ 222 (346)
+|..+.++.+.+.|+|-|.+ -|+. .+.+...+++.+++. .++-++|.|.++.
T Consensus 143 ~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~---~~v~l~~H~HND~ 197 (488)
T PRK09389 143 DFLKELYKAGIEAGADRICFCDTVGILTPEKTYELFKRLSEL---VKGPVSIHCHNDF 197 (488)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCcCHHHHHHHHHHHHhh---cCCeEEEEecCCc
Confidence 34445566677799998754 4543 667888888888763 3456788888764
No 324
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=53.23 E-value=2.3e+02 Score=27.67 Aligned_cols=96 Identities=13% Similarity=0.067 Sum_probs=58.3
Q ss_pred HHHHHhCCCCEEEEcc-CCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCC-
Q 019107 174 VLILANSGADLIAFET-IPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT- 251 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET-~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~- 251 (346)
++...+.|+|.|-+-| ....+.++..++.+++.| +.+.+++.. ... .+-+.+.+.++.+.+ .+++.|.+-=+
T Consensus 94 l~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G--~~v~~~l~~--a~~-~~~e~l~~~a~~~~~-~Ga~~i~i~DT~ 167 (337)
T PRK08195 94 LKMAYDAGVRVVRVATHCTEADVSEQHIGLARELG--MDTVGFLMM--SHM-APPEKLAEQAKLMES-YGAQCVYVVDSA 167 (337)
T ss_pred HHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCC--CeEEEEEEe--ccC-CCHHHHHHHHHHHHh-CCCCEEEeCCCC
Confidence 4556678999986654 334445666677778876 556555532 111 122233344444444 46776655443
Q ss_pred ---ChhhHHHHHHHHhhhc--CCcEEEee
Q 019107 252 ---SPRFIHGLILSVRKVT--SKPVIIYP 275 (346)
Q Consensus 252 ---~p~~~~~~l~~l~~~~--~~pl~vyp 275 (346)
.|+.+..+++.+++.. +.|+.+..
T Consensus 168 G~~~P~~v~~~v~~l~~~l~~~i~ig~H~ 196 (337)
T PRK08195 168 GALLPEDVRDRVRALRAALKPDTQVGFHG 196 (337)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 3999999999998875 56777654
No 325
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=53.08 E-value=1.1e+02 Score=29.14 Aligned_cols=64 Identities=19% Similarity=0.249 Sum_probs=43.6
Q ss_pred HHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECC
Q 019107 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC 250 (346)
|++...++|+|+|++--| +++|++.+++.+ . ....+.+..+ .|-++..+.++.. .+++.|-+--
T Consensus 200 ~~~eAl~agaDiImLDNm-~~e~~~~av~~l-~--~~~~~~lEaS--------GgIt~~ni~~yA~--tGVD~IS~ga 263 (280)
T COG0157 200 EAEEALEAGADIIMLDNM-SPEELKEAVKLL-G--LAGRALLEAS--------GGITLENIREYAE--TGVDVISVGA 263 (280)
T ss_pred HHHHHHHcCCCEEEecCC-CHHHHHHHHHHh-c--cCCceEEEEe--------CCCCHHHHHHHhh--cCCCEEEeCc
Confidence 344456699999999987 788999888876 2 2346666553 4667777766653 4777765543
No 326
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=52.84 E-value=2.1e+02 Score=27.19 Aligned_cols=99 Identities=13% Similarity=0.089 Sum_probs=58.3
Q ss_pred HHHHhCCCCEEEEccCC---------------CHHHHHHHHHHHHHhCCCCcEEEEE--EEcCCCcccCCCCHHHHHHHh
Q 019107 175 LILANSGADLIAFETIP---------------NKLEAKAYAELLEEEGITIPAWFSF--NSKDGINVVSGDSILECASIA 237 (346)
Q Consensus 175 ~~l~~~gvD~i~~ET~~---------------~~~E~~a~~~a~~~~~~~~pv~is~--~~~~~~~l~~G~~~~~av~~~ 237 (346)
+...+.|+|.+.+-.-. .+++++.+++.+++.+...-+.|++ .+..+++. +=+.+.+.++.+
T Consensus 86 e~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~-~~~~~~~~~~~~ 164 (287)
T PRK05692 86 EAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEV-PPEAVADVAERL 164 (287)
T ss_pred HHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCC-CHHHHHHHHHHH
Confidence 34456899987655222 1335677788888877322223333 33444432 222344455555
Q ss_pred hcCCCceEEEECCC----ChhhHHHHHHHHhhhcC-CcEEEee
Q 019107 238 DSCEQVVAVGINCT----SPRFIHGLILSVRKVTS-KPVIIYP 275 (346)
Q Consensus 238 ~~~~~~~avGvNC~----~p~~~~~~l~~l~~~~~-~pl~vyp 275 (346)
.+ .+++.|.+-=+ .|..+..+++.+++..+ .|+.+..
T Consensus 165 ~~-~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~ 206 (287)
T PRK05692 165 FA-LGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHF 206 (287)
T ss_pred HH-cCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 44 46776665433 49999999999987654 6777654
No 327
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=52.71 E-value=2.3e+02 Score=27.65 Aligned_cols=96 Identities=14% Similarity=0.050 Sum_probs=58.1
Q ss_pred HHHHHhCCCCEEEEccC-CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCC-
Q 019107 174 VLILANSGADLIAFETI-PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT- 251 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~-~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~- 251 (346)
++...+.|+|.+-+-|- ...+.++..++.+++.| ..+.+++.. ... .+-+.+.+.++.+.+ .+++.|.+-=+
T Consensus 93 l~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G--~~v~~~l~~--s~~-~~~e~l~~~a~~~~~-~Ga~~i~i~DT~ 166 (333)
T TIGR03217 93 LKAAYDAGARTVRVATHCTEADVSEQHIGMARELG--MDTVGFLMM--SHM-TPPEKLAEQAKLMES-YGADCVYIVDSA 166 (333)
T ss_pred HHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcC--CeEEEEEEc--ccC-CCHHHHHHHHHHHHh-cCCCEEEEccCC
Confidence 45566789999876543 33445666677788876 555555532 111 122233344444443 46676655433
Q ss_pred ---ChhhHHHHHHHHhhhcC--CcEEEee
Q 019107 252 ---SPRFIHGLILSVRKVTS--KPVIIYP 275 (346)
Q Consensus 252 ---~p~~~~~~l~~l~~~~~--~pl~vyp 275 (346)
.|+.+..+++.+++..+ .|+++..
T Consensus 167 G~~~P~~v~~~v~~l~~~l~~~i~ig~H~ 195 (333)
T TIGR03217 167 GAMLPDDVRDRVRALKAVLKPETQVGFHA 195 (333)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCceEEEEe
Confidence 38999999999987754 7777764
No 328
>PF06187 DUF993: Protein of unknown function (DUF993); InterPro: IPR009334 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 4DNH_A.
Probab=52.67 E-value=2e+02 Score=28.35 Aligned_cols=88 Identities=13% Similarity=0.172 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHH----------HHHHHHhCCCCcEEEEEEEcC-CCcc--cCC
Q 019107 161 VSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAY----------AELLEEEGITIPAWFSFNSKD-GINV--VSG 227 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~----------~~a~~~~~~~~pv~is~~~~~-~~~l--~~G 227 (346)
.+.+++.+.|++|++...+.|...|+ |-|-.=++.+ -+++++. +.||++..-=+. +..| --|
T Consensus 125 ~sld~V~~AY~eQ~~~ve~~Gg~~IL---MASRaLA~~A~~p~DY~~VY~~lL~q~--~~PVILHWLG~mFDPaL~GYWG 199 (382)
T PF06187_consen 125 ASLDDVIAAYEEQLEAVEAAGGRVIL---MASRALAAVARSPDDYLRVYDRLLSQA--DEPVILHWLGDMFDPALAGYWG 199 (382)
T ss_dssp --HHHHHHHHHHHHHHHHHTT--EEE------HHHHHH--SHHHHHHHHHHHHHH---SS-EEEEEE-TTT-GGGTTTTS
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEE---eehHHHHHhhCCHHHHHHHHHHHHHHc--CCCEEEEecccccCcccccccC
Confidence 58999999999999999999999998 3333222222 2334543 489998874221 1122 122
Q ss_pred -CCHHHHHHH----hhc-CCCceEEEECCCCh
Q 019107 228 -DSILECASI----ADS-CEQVVAVGINCTSP 253 (346)
Q Consensus 228 -~~~~~av~~----~~~-~~~~~avGvNC~~p 253 (346)
.++.++.+. +.. ...+++|=|.--..
T Consensus 200 s~d~~~A~~t~l~lI~~~~~kVdGIKiSLLD~ 231 (382)
T PF06187_consen 200 SADLDAAMDTVLELIAAHADKVDGIKISLLDA 231 (382)
T ss_dssp -SSHHHHHHHHHHHHHHTGGGEEEEEEES--H
T ss_pred CCcHHHHHHHHHHHHHhChhhcCeeEecccCc
Confidence 355555443 322 23567666654443
No 329
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=52.60 E-value=1.5e+02 Score=27.82 Aligned_cols=99 Identities=10% Similarity=0.044 Sum_probs=60.9
Q ss_pred HHHHHHhCCCCEEEEccCCCHH---HHHHHHHHHHHhCCCCcEEEEEEEc--CCC--cc-------cCCCCHH-HHHHHh
Q 019107 173 RVLILANSGADLIAFETIPNKL---EAKAYAELLEEEGITIPAWFSFNSK--DGI--NV-------VSGDSIL-ECASIA 237 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~~~~~---E~~a~~~a~~~~~~~~pv~is~~~~--~~~--~l-------~~G~~~~-~av~~~ 237 (346)
+++.+.++|+|-+.+-|.--.+ ....+-++.+++| +-.+++++.++ +++ ++ .++.++. +.++.+
T Consensus 89 ~v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG-~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~~ 167 (253)
T TIGR02129 89 NAQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVG-KDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEEL 167 (253)
T ss_pred HHHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhC-CCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHHH
Confidence 4556777999999998742211 1334556667776 45799999886 122 21 2445666 777777
Q ss_pred hcCCCceEEEECCCChhhH-----HHHHHHHhhhcCCcEEEe
Q 019107 238 DSCEQVVAVGINCTSPRFI-----HGLILSVRKVTSKPVIIY 274 (346)
Q Consensus 238 ~~~~~~~avGvNC~~p~~~-----~~~l~~l~~~~~~pl~vy 274 (346)
.. . +..|-++-.+-+-+ ..+++.+.+..+.|+++-
T Consensus 168 ~~-~-~~~il~TdI~rDGtl~G~dlel~~~l~~~~~ipVIAS 207 (253)
T TIGR02129 168 SK-Y-CDEFLIHAADVEGLCKGIDEELVSKLGEWSPIPITYA 207 (253)
T ss_pred Hh-h-CCEEEEeeecccCccccCCHHHHHHHHhhCCCCEEEE
Confidence 54 2 55666666432221 456677777778887764
No 330
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=52.39 E-value=2.1e+02 Score=26.98 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=57.1
Q ss_pred HHHHHhCCCCEEEEccCCCH---------------HHHHHHHHHHHHhCCCCcEEE--EEEEcCCCcccCCCCHHHHHHH
Q 019107 174 VLILANSGADLIAFETIPNK---------------LEAKAYAELLEEEGITIPAWF--SFNSKDGINVVSGDSILECASI 236 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~---------------~E~~a~~~a~~~~~~~~pv~i--s~~~~~~~~l~~G~~~~~av~~ 236 (346)
++...+.|+|.|-+-.-.+- +.++.+++.+++.+...-+.+ +|.+++.+.. +-+-+.+.++.
T Consensus 79 v~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~-~~~~~~~~~~~ 157 (274)
T cd07938 79 AERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEV-PPERVAEVAER 157 (274)
T ss_pred HHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCC-CHHHHHHHHHH
Confidence 45566788998765533332 334455667777763222222 3444444443 22223344554
Q ss_pred hhcCCCceEEEECCC----ChhhHHHHHHHHhhhc-CCcEEEee
Q 019107 237 ADSCEQVVAVGINCT----SPRFIHGLILSVRKVT-SKPVIIYP 275 (346)
Q Consensus 237 ~~~~~~~~avGvNC~----~p~~~~~~l~~l~~~~-~~pl~vyp 275 (346)
+.+ .+++.|.+-=+ .|..+..+++.+++.. +.|+.+.-
T Consensus 158 ~~~-~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~ 200 (274)
T cd07938 158 LLD-LGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHF 200 (274)
T ss_pred HHH-cCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEEE
Confidence 444 46776666543 4999999999998765 46776654
No 331
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=52.38 E-value=1.6e+02 Score=25.77 Aligned_cols=50 Identities=20% Similarity=0.198 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCCCEEEEc-----cCCCHHHHHHHHHHHHHhCCCCcEEEEEEEc
Q 019107 169 FHRRRVLILANSGADLIAFE-----TIPNKLEAKAYAELLEEEGITIPAWFSFNSK 219 (346)
Q Consensus 169 ~~~~~i~~l~~~gvD~i~~E-----T~~~~~E~~a~~~a~~~~~~~~pv~is~~~~ 219 (346)
...+.++.+.+.|+|.|=+- .+++......+++.+++.. +.|+.+-+.+.
T Consensus 12 ~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~-~~~v~v~lm~~ 66 (210)
T TIGR01163 12 RLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYT-DLPIDVHLMVE 66 (210)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcC-CCcEEEEeeeC
Confidence 45567888999999998763 3344444344455555543 46765555554
No 332
>PRK10481 hypothetical protein; Provisional
Probab=52.26 E-value=1.9e+02 Score=26.59 Aligned_cols=107 Identities=14% Similarity=0.142 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEccCC---CHHHHHHHH-----------HHHHHhC-------------------
Q 019107 161 VSLETLKEFHRRRVLILANSGADLIAFETIP---NKLEAKAYA-----------ELLEEEG------------------- 207 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~---~~~E~~a~~-----------~a~~~~~------------------- 207 (346)
++.+.+...-+.+|+.|.+.|+|.|++=.+. .+...+.++ .++....
T Consensus 70 ~s~~~v~~~lq~~i~~l~~~g~d~ivl~Ctgdfp~l~a~r~~l~~P~~~i~~lv~Al~~g~riGVitP~~~qi~~~~~kw 149 (224)
T PRK10481 70 VSKQKVERDLQSVIEVLDNQGYDVILLLCTGEFPSLTARNAILLEPSRILPPLVAAIVGGHQVGVIVPVEEQLAQQAQKW 149 (224)
T ss_pred EEHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCCCccccCccccCchhhHHHHHHHhcCCCeEEEEEeCHHHHHHHHHHH
Confidence 5788888889999999999999999865444 333322221 1111100
Q ss_pred --CCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCChhhHHHHHHHHhhhcCCcEEE
Q 019107 208 --ITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 208 --~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~p~~~~~~l~~l~~~~~~pl~v 273 (346)
...++. +.+.+.. ..+-..+.++++.+.. .++++|-+-|++... ...+.+++...+|++.
T Consensus 150 ~~~G~~v~--~~~aspy-~~~~~~l~~aa~~L~~-~gaD~Ivl~C~G~~~--~~~~~le~~lg~PVI~ 211 (224)
T PRK10481 150 QVLQKPPV--FALASPY-HGSEEELIDAGKELLD-QGADVIVLDCLGYHQ--RHRDLLQKALDVPVLL 211 (224)
T ss_pred HhcCCcee--EeecCCC-CCCHHHHHHHHHHhhc-CCCCEEEEeCCCcCH--HHHHHHHHHHCcCEEc
Confidence 012222 2222211 1111134455555544 589999999997542 3355566667888643
No 333
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=52.05 E-value=2.1e+02 Score=27.03 Aligned_cols=65 Identities=12% Similarity=0.164 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhCCCCEEEEc-cCC--CHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhc
Q 019107 169 FHRRRVLILANSGADLIAFE-TIP--NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS 239 (346)
Q Consensus 169 ~~~~~i~~l~~~gvD~i~~E-T~~--~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~ 239 (346)
+..+.++.+.+.|+|-|.+- |+. ++.++..+++.+++.-.+ +-++|.+.++. |..++.++..++.
T Consensus 148 ~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~--~~i~~H~Hnd~----Gla~AN~laA~~a 215 (280)
T cd07945 148 YVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRYPN--LHFDFHAHNDY----DLAVANVLAAVKA 215 (280)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhhCCC--CeEEEEeCCCC----CHHHHHHHHHHHh
Confidence 44556667788899988653 543 677888888888763212 45678777765 6566777766653
No 334
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=51.15 E-value=2.3e+02 Score=28.74 Aligned_cols=66 Identities=9% Similarity=0.112 Sum_probs=42.3
Q ss_pred HHHHHHHHhCCCCEEEEccC-CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEE
Q 019107 171 RRRVLILANSGADLIAFETI-PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI 248 (346)
Q Consensus 171 ~~~i~~l~~~gvD~i~~ET~-~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGv 248 (346)
.++++.|.++|+|+|.+-+- .+-.-+...++.+++.-.++|+++.- ..+.+++...++ .++++|.+
T Consensus 226 ~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~----------v~t~~~a~~l~~--aGad~i~v 292 (450)
T TIGR01302 226 KERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGN----------VATAEQAKALID--AGADGLRV 292 (450)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEe----------CCCHHHHHHHHH--hCCCEEEE
Confidence 35788899999999998752 23334455566666652368988732 345666666554 36777754
No 335
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=50.98 E-value=1.7e+02 Score=25.70 Aligned_cols=99 Identities=18% Similarity=0.033 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEccC--CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhc
Q 019107 162 SLETLKEFHRRRVLILANSGADLIAFETI--PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS 239 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~~~gvD~i~~ET~--~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~ 239 (346)
+.+++.+ .++.+ +.|+|+| |-- -.......+++.+++...+.++.+.+.+.+-++ ..++.+..
T Consensus 10 ~~~~a~~----~~~~l-~~~v~~i--ev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~--------~~~~~~~~ 74 (206)
T TIGR03128 10 DIEEALE----LAEKV-ADYVDII--EIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGE--------YEAEQAFA 74 (206)
T ss_pred CHHHHHH----HHHHc-ccCeeEE--EeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEeeccchH--------HHHHHHHH
Confidence 4555544 56667 7888865 542 232333445556665421456666554332221 12333333
Q ss_pred CCCceEEEECCCCh-hhHHHHHHHHhhhcCCcEEEe-eCC
Q 019107 240 CEQVVAVGINCTSP-RFIHGLILSVRKVTSKPVIIY-PNS 277 (346)
Q Consensus 240 ~~~~~avGvNC~~p-~~~~~~l~~l~~~~~~pl~vy-pN~ 277 (346)
.+++.+-+.|..+ ..+..+++..++. ..++++- +|.
T Consensus 75 -~Gad~i~vh~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~ 112 (206)
T TIGR03128 75 -AGADIVTVLGVADDATIKGAVKAAKKH-GKEVQVDLINV 112 (206)
T ss_pred -cCCCEEEEeccCCHHHHHHHHHHHHHc-CCEEEEEecCC
Confidence 4778888888743 4556777766654 5565543 454
No 336
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=50.89 E-value=81 Score=27.86 Aligned_cols=53 Identities=26% Similarity=0.334 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcc
Q 019107 169 FHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINV 224 (346)
Q Consensus 169 ~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l 224 (346)
.|.+|++++-..|-=+|.+=|-.+-.-+.-+++.+++.+ . .+|.++=++.+++
T Consensus 98 vFsRqveA~g~~GDvLigISTSGNS~nVl~Ai~~Ak~~g--m-~vI~ltG~~GG~~ 150 (176)
T COG0279 98 VFSRQVEALGQPGDVLIGISTSGNSKNVLKAIEAAKEKG--M-TVIALTGKDGGKL 150 (176)
T ss_pred HHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcC--C-EEEEEecCCCccc
Confidence 477899999988855556788888888888888888765 4 4456766666553
No 337
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=50.79 E-value=2e+02 Score=26.40 Aligned_cols=90 Identities=12% Similarity=0.130 Sum_probs=53.5
Q ss_pred HHHHHhCCCCEEEEccC--CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcc------cCCCCHHHHHHHhhcCCCceE
Q 019107 174 VLILANSGADLIAFETI--PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINV------VSGDSILECASIADSCEQVVA 245 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~--~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l------~~G~~~~~av~~~~~~~~~~a 245 (346)
++.+.+.|+|-+++-|. .++ ..+-+++++++ +-.+++|+.++.++++ ..+.++.+.+..+.. .++..
T Consensus 88 ~~~~l~~Ga~kvvigt~a~~~p---~~~~~~~~~~g-~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~-~g~~~ 162 (232)
T PRK13586 88 AKRLLSLDVNALVFSTIVFTNF---NLFHDIVREIG-SNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNE-LELLG 162 (232)
T ss_pred HHHHHHCCCCEEEECchhhCCH---HHHHHHHHHhC-CCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHh-cCCCE
Confidence 44455689999998664 344 34455566765 3568999988423332 244577788888765 35555
Q ss_pred EEECCCC-------hhhHHHHHHHHhhhcCCcE
Q 019107 246 VGINCTS-------PRFIHGLILSVRKVTSKPV 271 (346)
Q Consensus 246 vGvNC~~-------p~~~~~~l~~l~~~~~~pl 271 (346)
+-++-.. |+ ..+++.+.+. ..|+
T Consensus 163 ii~tdI~~dGt~~G~d--~el~~~~~~~-~~~v 192 (232)
T PRK13586 163 IIFTYISNEGTTKGID--YNVKDYARLI-RGLK 192 (232)
T ss_pred EEEecccccccCcCcC--HHHHHHHHhC-CCCE
Confidence 5555532 32 3356666554 4453
No 338
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=50.60 E-value=2.1e+02 Score=26.46 Aligned_cols=102 Identities=18% Similarity=0.142 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEc----------------cCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCccc
Q 019107 162 SLETLKEFHRRRVLILANSGADLIAFE----------------TIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVV 225 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~~~gvD~i~~E----------------T~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~ 225 (346)
+++++.+ .++.+ ..++|.|=+- -+.+++-+..+++++++. ++||++-+....
T Consensus 78 ~~ee~~~----~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~--~~PVsvKiR~~~----- 145 (231)
T TIGR00736 78 DLEEAYD----VLLTI-AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKEL--NKPIFVKIRGNC----- 145 (231)
T ss_pred CHHHHHH----HHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcC--CCcEEEEeCCCC-----
Confidence 5566554 33333 3478877543 233667777788888854 489888776422
Q ss_pred CCCCHHHHHHHhhcCCCceEEEECCCCh---hhHHHHHHHHhhhcC-CcEEEeeCCC
Q 019107 226 SGDSILECASIADSCEQVVAVGINCTSP---RFIHGLILSVRKVTS-KPVIIYPNSG 278 (346)
Q Consensus 226 ~G~~~~~av~~~~~~~~~~avGvNC~~p---~~~~~~l~~l~~~~~-~pl~vypN~g 278 (346)
+.....+.++.+.+ .++++|-|.|.-+ ..-...++++++..+ .|++. |.|
T Consensus 146 ~~~~~~~~a~~l~~-aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIg--NGg 199 (231)
T TIGR00736 146 IPLDELIDALNLVD-DGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIG--NNS 199 (231)
T ss_pred CcchHHHHHHHHHH-cCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEE--ECC
Confidence 22344566766655 5899999988533 234677788877763 77544 554
No 339
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=50.44 E-value=3e+02 Score=28.29 Aligned_cols=151 Identities=11% Similarity=0.004 Sum_probs=79.0
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEE-----E-ccCCCHH-HHHHHHHHH----HHhCCCCcEEEEEEEcCCCcccCCCC
Q 019107 161 VSLETLKEFHRRRVLILANSGADLIA-----F-ETIPNKL-EAKAYAELL----EEEGITIPAWFSFNSKDGINVVSGDS 229 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~~gvD~i~-----~-ET~~~~~-E~~a~~~a~----~~~~~~~pv~is~~~~~~~~l~~G~~ 229 (346)
++.+++.+ ++..+...|+|+|= . ..+.-.+ -++++.+++ +++| .+.+.++.+ +|.+
T Consensus 173 Lsp~~~a~----~~y~~~~GGvD~IKDDE~l~~q~f~p~~~Rv~~~~~a~~~a~~eTG--~~k~y~~Ni-------T~~~ 239 (468)
T PRK04208 173 LSAKNYGR----VVYEALRGGLDFTKDDENLNSQPFNRWRDRFLFVMEAIDKAEAETG--ERKGHYLNV-------TAPT 239 (468)
T ss_pred CCHHHHHH----HHHHHHhcCCceeeCCCCCCCCCCccHHHHHHHHHHHHHHHHHhhC--CcceEEEec-------CCCC
Confidence 46666655 44456668999982 2 2233333 344444444 4456 444444544 3433
Q ss_pred HHHHHHH---hhcCCCceEEEECCC--ChhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHH
Q 019107 230 ILECASI---ADSCEQVVAVGINCT--SPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIG 304 (346)
Q Consensus 230 ~~~av~~---~~~~~~~~avGvNC~--~p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (346)
..+..+. +.. .+..++.||.. +...+ ..|.......+.||.+.|+.-..+... +..+++... +.+
T Consensus 240 ~~em~~ra~~~~e-~G~~~~mv~~~~~G~~~l-~~l~~~~~~~~l~IhaHrA~~ga~~r~-----~~~Gis~~v---l~K 309 (468)
T PRK04208 240 MEEMYKRAEFAKE-LGSPIVMIDVVTAGWTAL-QSLREWCRDNGLALHAHRAMHAAFTRN-----PNHGISFRV---LAK 309 (468)
T ss_pred HHHHHHHHHHHHH-hCCCEEEEeccccccHHH-HHHHHhhhcCCcEEEecCCcccccccC-----cCCCCCHHH---HHH
Confidence 4454443 333 47788999885 33332 333333224578999988863222111 111234322 444
Q ss_pred HHHHcCCe--EE---eecCCCchHHHHHHHHHHcC
Q 019107 305 KWRDAGAS--LF---GGCCRTTPNTIKAISRVLSN 334 (346)
Q Consensus 305 ~~~~~G~~--iv---GGCCGt~P~hI~al~~~~~~ 334 (346)
-|+-.|+. ++ +|==..+++...++++.+..
T Consensus 310 l~RLaGaD~ih~~t~~Gk~~~~~~~~~~~~~~l~~ 344 (468)
T PRK04208 310 LLRLIGVDHLHTGTVVGKLEGDRAEVLGYYDILRE 344 (468)
T ss_pred HHHHcCCCccccCCccCCccCCHHHHHHHHHHHhh
Confidence 45656644 23 44444778888888876643
No 340
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=50.37 E-value=46 Score=30.23 Aligned_cols=44 Identities=9% Similarity=0.132 Sum_probs=33.0
Q ss_pred HHHHHHHHHhCCCCEEEEc-cC-CCHHHHHHHHHHHHHhCCCCcEEE
Q 019107 170 HRRRVLILANSGADLIAFE-TI-PNKLEAKAYAELLEEEGITIPAWF 214 (346)
Q Consensus 170 ~~~~i~~l~~~gvD~i~~E-T~-~~~~E~~a~~~a~~~~~~~~pv~i 214 (346)
....++.+.++|+|.|++- |. -+.+++...++++|+.. ++|+|+
T Consensus 13 ~~~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~-~lPvil 58 (205)
T TIGR01769 13 IEKIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKIT-NLPVIL 58 (205)
T ss_pred HHHHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhc-CCCEEE
Confidence 3345667888999999997 42 35567777888888853 699998
No 341
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=49.97 E-value=95 Score=29.71 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=16.2
Q ss_pred cCCCCHHHHHHHhhcCCCceEEEECCCC
Q 019107 225 VSGDSILECASIADSCEQVVAVGINCTS 252 (346)
Q Consensus 225 ~~G~~~~~av~~~~~~~~~~avGvNC~~ 252 (346)
.+|.+++.+.+.++ .+...|++-.++
T Consensus 85 DHg~~~e~i~~ai~--~GftSVM~DgS~ 110 (286)
T PRK08610 85 DHGSSFEKCKEAID--AGFTSVMIDASH 110 (286)
T ss_pred CCCCCHHHHHHHHH--cCCCEEEEeCCC
Confidence 46666666666554 256677777764
No 342
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=49.95 E-value=1.5e+02 Score=30.32 Aligned_cols=83 Identities=14% Similarity=0.118 Sum_probs=47.7
Q ss_pred CCCCEEEEccCCCHHHHH------HHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHH---HhhcC--CCceEEEE
Q 019107 180 SGADLIAFETIPNKLEAK------AYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECAS---IADSC--EQVVAVGI 248 (346)
Q Consensus 180 ~gvD~i~~ET~~~~~E~~------a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~---~~~~~--~~~~avGv 248 (346)
.+.|++++|+...+.+.- ...+.++..+ .||++-+.+.. |..+..+.. .++.. ..+.++-+
T Consensus 121 ~~~D~vIIEGaGGl~~~~~~~~d~s~~~lA~~l~--apVILV~d~~~------g~~~a~i~gt~~~l~~~~~~~i~GvIl 192 (475)
T TIGR00313 121 REYDYVVIEGAGSPAEINLLKRDLANMRIAELAN--ADAILVADIDR------GGVFASIYGTLKLLPENWRKLIKGIVI 192 (475)
T ss_pred hcCCEEEEECCCCccccccCcCCchHHHHHHHhC--CCEEEEEeCCc------cHHHHHHHHHHHHhChhhcCceEEEEE
Confidence 468999999998776521 2345566654 89987754422 222223322 22221 24678999
Q ss_pred CCCCh--hhHHHHHHHHhhhcCCc
Q 019107 249 NCTSP--RFIHGLILSVRKVTSKP 270 (346)
Q Consensus 249 NC~~p--~~~~~~l~~l~~~~~~p 270 (346)
|++.+ ..+...++.+.+....|
T Consensus 193 Nrv~~~~~~~~~~~~~l~e~~gip 216 (475)
T TIGR00313 193 NKFRGNVDVLKSGIEKLEELTGIP 216 (475)
T ss_pred eccCCcHHHHHHHHHHHHHhhCCC
Confidence 99854 33445555555544555
No 343
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=49.84 E-value=53 Score=30.35 Aligned_cols=86 Identities=21% Similarity=0.178 Sum_probs=50.9
Q ss_pred CeEEEecchHHHHHHcCCCCCCCc----------cchhccCCChHHHHHHHHHHHHhhcceeeccccccCHHhH-HhCCC
Q 019107 21 GYSVVDGGFATELERHGADLNDPL----------WSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGF-EAKGF 89 (346)
Q Consensus 21 ~~lilDGg~gt~L~~~G~~~~~~l----------wsa~~ll~~Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l-~~~g~ 89 (346)
.+.++||-|=.-|++.|+-+..++ +-..+.+.+++.- ++-.+||||||..|-=-..--.. .+.++
T Consensus 123 Tv~~iDG~~R~~lEetGmG~~~Evemlr~A~~k~l~t~~yV~s~~eA----qa~~~aGadiiv~hmg~ttgG~Igar~~~ 198 (276)
T COG5564 123 TVGLIDGRMRASLEETGMGYGLEVEMLREAHAKDLLTTPYVFSFEEA----QAMTKAGADIIVAHMGLTTGGLIGARSAL 198 (276)
T ss_pred eeEEecchhhhhHHHhCcchHHHHHHHHHHHhccccccceecCHHHH----HHHHHcCcceeeecccccccceecccccc
Confidence 478999999999998866442111 0011222333332 23468999999876422211112 34566
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 019107 90 STEEAEALLRRSVEIACEARE 110 (346)
Q Consensus 90 ~~~~~~~l~~~av~lA~~A~~ 110 (346)
+.+++.++.+.+.+-+|..++
T Consensus 199 Sl~~~vel~~~~~~aar~v~k 219 (276)
T COG5564 199 SLADCVELIELAAEAARGVRK 219 (276)
T ss_pred CHHHHHHHHHHHHHHHhhhhh
Confidence 767777887777777776653
No 344
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=49.78 E-value=2.9e+02 Score=27.86 Aligned_cols=100 Identities=19% Similarity=0.169 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEE-----EEc-cCCCH-HHHHHHHHHH----HHhCCCCcEEEEEEEcCCCcccCCCC
Q 019107 161 VSLETLKEFHRRRVLILANSGADLI-----AFE-TIPNK-LEAKAYAELL----EEEGITIPAWFSFNSKDGINVVSGDS 229 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~~gvD~i-----~~E-T~~~~-~E~~a~~~a~----~~~~~~~pv~is~~~~~~~~l~~G~~ 229 (346)
++.+++.+ ++..+...|+|+| +.. ++.-. +.++++.+++ +++| .+.+-++.+ +|.
T Consensus 156 lsp~~~a~----~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG--~~~~y~~Ni-------T~~- 221 (406)
T cd08207 156 LTPEETAA----LVRQLAAAGIDFIKDDELLANPPYSPLDERVRAVMRVINDHAQRTG--RKVMYAFNI-------TDD- 221 (406)
T ss_pred CCHHHHHH----HHHHHHhCCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHhhC--CcceEEEec-------CCC-
Confidence 46666665 4455666899997 222 22222 2344444444 4456 444445544 232
Q ss_pred HHHHHHH---hhcCCCceEEEECCCChhhHHHHHHHHhhhcCCcEEEeeCC
Q 019107 230 ILECASI---ADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNS 277 (346)
Q Consensus 230 ~~~av~~---~~~~~~~~avGvNC~~p~~~~~~l~~l~~~~~~pl~vypN~ 277 (346)
..+..+. +.. .+..++.+|.... -...++.+++..+.|+...|+.
T Consensus 222 ~~em~~ra~~~~~-~G~~~~mv~~~~~--G~~~l~~l~~~~~l~IhaHra~ 269 (406)
T cd08207 222 IDEMRRNHDLVVE-AGGTCVMVSLNSV--GLSGLAALRRHSQLPIHGHRNG 269 (406)
T ss_pred HHHHHHHHHHHHH-hCCCeEEEecccc--chHHHHHHHhcCCceEEECCCc
Confidence 4455443 333 4667788887521 1233555555568899888875
No 345
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=49.40 E-value=2.4e+02 Score=26.90 Aligned_cols=96 Identities=8% Similarity=-0.030 Sum_probs=62.6
Q ss_pred HHHHHHhCCCCEEEEccC--------------CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhh
Q 019107 173 RVLILANSGADLIAFETI--------------PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~--------------~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~ 238 (346)
-++.+.++||-.|.+|-. -+.+|...=++++++...+.+++|.-.. +... ...++++++.+.
T Consensus 93 tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART--Da~~--~~g~deAI~Ra~ 168 (285)
T TIGR02317 93 TVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIART--DARA--VEGLDAAIERAK 168 (285)
T ss_pred HHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEc--Cccc--ccCHHHHHHHHH
Confidence 577888999999999974 2566777777777765434567766544 3332 234889988764
Q ss_pred c--CCCceEEEECCC-ChhhHHHHHHHHhhhcCCcEEEeeC
Q 019107 239 S--CEQVVAVGINCT-SPRFIHGLILSVRKVTSKPVIIYPN 276 (346)
Q Consensus 239 ~--~~~~~avGvNC~-~p~~~~~~l~~l~~~~~~pl~vypN 276 (346)
. ..|+++|-+-+. +.+.+..+.+. .+.|+++-+-
T Consensus 169 ay~~AGAD~vfi~g~~~~e~i~~~~~~----i~~Pl~~n~~ 205 (285)
T TIGR02317 169 AYVEAGADMIFPEALTSLEEFRQFAKA----VKVPLLANMT 205 (285)
T ss_pred HHHHcCCCEEEeCCCCCHHHHHHHHHh----cCCCEEEEec
Confidence 3 257888888775 45555554444 4578765443
No 346
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.34 E-value=1.2e+02 Score=29.00 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=42.0
Q ss_pred HHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECC
Q 019107 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC 250 (346)
+....+.|+|+|++..| ++++++.+++.++. . +.+.. ..|-++..+.+++. .+++.|-+-.
T Consensus 206 ~~ea~~~gaDiImLDn~-s~e~l~~av~~~~~----~-~~lea--------SGgI~~~ni~~yA~--tGVD~Is~ga 266 (281)
T PRK06543 206 IEPVLAAGVDTIMLDNF-SLDDLREGVELVDG----R-AIVEA--------SGNVNLNTVGAIAS--TGVDVISVGA 266 (281)
T ss_pred HHHHHhcCCCEEEECCC-CHHHHHHHHHHhCC----C-eEEEE--------ECCCCHHHHHHHHh--cCCCEEEeCc
Confidence 33455689999999998 78898888886652 1 22222 25677887777764 5788776655
No 347
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=49.25 E-value=77 Score=29.90 Aligned_cols=59 Identities=19% Similarity=0.239 Sum_probs=39.3
Q ss_pred HHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECC
Q 019107 176 ILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (346)
Q Consensus 176 ~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC 250 (346)
...+.|+|+|.+..|+ +++++.+++..++ ++|+.++ .|-++..+.+.+. .++++|.+-.
T Consensus 197 ~A~~~gaDyI~ld~~~-~e~l~~~~~~~~~---~ipi~Ai----------GGI~~~ni~~~a~--~Gvd~Iav~s 255 (268)
T cd01572 197 EALEAGADIIMLDNMS-PEELREAVALLKG---RVLLEAS----------GGITLENIRAYAE--TGVDYISVGA 255 (268)
T ss_pred HHHHcCCCEEEECCcC-HHHHHHHHHHcCC---CCcEEEE----------CCCCHHHHHHHHH--cCCCEEEEEe
Confidence 3456899999999984 7787777775542 3665543 4667777776664 4666665543
No 348
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=49.00 E-value=2.7e+02 Score=27.23 Aligned_cols=90 Identities=9% Similarity=0.067 Sum_probs=49.2
Q ss_pred CCCHHH---HHHHHHHHHHHHHhCCCCEEEEcc--------C--C-----------CH-HHHH---HHHHHHHHh-CC--
Q 019107 160 AVSLET---LKEFHRRRVLILANSGADLIAFET--------I--P-----------NK-LEAK---AYAELLEEE-GI-- 208 (346)
Q Consensus 160 ~~~~~e---~~~~~~~~i~~l~~~gvD~i~~ET--------~--~-----------~~-~E~~---a~~~a~~~~-~~-- 208 (346)
.+|.+| +.+.|.+-++.+.++|.|.+=+=- | | ++ ..++ .+++++++. +.
T Consensus 133 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~ 212 (353)
T cd04735 133 ELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHA 212 (353)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhcccc
Confidence 356555 555677777778889999985431 0 1 11 1223 344555553 30
Q ss_pred CCcEEEEEEEcCCCcccCCCCHHHHHHHh---hcCCCceEEEECC
Q 019107 209 TIPAWFSFNSKDGINVVSGDSILECASIA---DSCEQVVAVGINC 250 (346)
Q Consensus 209 ~~pv~is~~~~~~~~l~~G~~~~~av~~~---~~~~~~~avGvNC 250 (346)
..++.|.+.+..+.....|.++++.++.+ ++ .+++.|-|-+
T Consensus 213 ~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~-~GvD~I~Vs~ 256 (353)
T cd04735 213 DKDFILGYRFSPEEPEEPGIRMEDTLALVDKLAD-KGLDYLHISL 256 (353)
T ss_pred CCCceEEEEECcccccCCCCCHHHHHHHHHHHHH-cCCCEEEecc
Confidence 03444444443333344677777765543 33 4788887765
No 349
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=48.35 E-value=1.2e+02 Score=28.91 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=17.7
Q ss_pred ccCCCCHHHHHHHhhcCCCceEEEECCCC
Q 019107 224 VVSGDSILECASIADSCEQVVAVGINCTS 252 (346)
Q Consensus 224 l~~G~~~~~av~~~~~~~~~~avGvNC~~ 252 (346)
|.+|.+++.+.+.++. +...|++-+++
T Consensus 84 LDHg~~~e~i~~ai~~--GftSVM~DgS~ 110 (285)
T PRK07709 84 LDHGSSFEKCKEAIDA--GFTSVMIDASH 110 (285)
T ss_pred CCCCCCHHHHHHHHHc--CCCEEEEeCCC
Confidence 3466677777666653 56777777775
No 350
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=48.30 E-value=2.7e+02 Score=27.47 Aligned_cols=228 Identities=17% Similarity=0.216 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHhhcceeeccccccCHHhHHhC-----C--C--CH----HHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 019107 56 LVRKVHLDYLDAGANIIITASYQATIQGFEAK-----G--F--ST----EEAEALLRRSVEIACEAREIYYDRCMKDSWD 122 (346)
Q Consensus 56 ~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~~-----g--~--~~----~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~ 122 (346)
.++++...=++||.|+++-.-|+ .-+... | . ++ ++...+.. .+.-.+++..|.++.++
T Consensus 39 ~~~~~~~~q~dAGld~~Tdgqlr---Dm~~~fl~~i~~~~~~~~p~~~~~~~a~i~e--l~~~~~~~~~~~~~~~~---- 109 (344)
T PRK06052 39 VVRSAFQMKIDAGVQVPTYPQFR---DMIEQFLDIIRDEKCCEEPYVVKEECAKILE--LEAIEEVAKEYKEETGE---- 109 (344)
T ss_pred HHHHHHHHHHhcCCccccchHHH---HHHHhHHHHHcCCcccCCCeeeehhhhhHHH--HHHHHHHHHHHHHhhCC----
Confidence 66777777888999999988888 222111 1 0 10 11222222 23345555666555321
Q ss_pred CCCCCCCCCCCcEEEEecCCccCCcCCCCCCCC-CCCC--CCCHHHHHHHHHHHHHHHHhCCCCEEEE-----ccCC---
Q 019107 123 FTGSGRISSRPVLVAASVGSYGAYLADGSEYSG-DYGD--AVSLETLKEFHRRRVLILANSGADLIAF-----ETIP--- 191 (346)
Q Consensus 123 ~~~~~~~~~~~~~VaGsiGP~g~~l~~g~eY~g-~~~~--~~~~~e~~~~~~~~i~~l~~~gvD~i~~-----ET~~--- 191 (346)
..+-++.|. ||+--+.. .|.+ .|.+ ..-..++..+-++.++.+.+.||++|-+ -|.+
T Consensus 110 ------~~~VKv~iT---GP~tL~~~---~f~~~~Y~d~~~~la~~ia~~l~~e~~~l~~~gv~~IqIDEP~l~~~~~~~ 177 (344)
T PRK06052 110 ------TLEVRVCVT---GPTELYLQ---EFGGTIYTDILLILAKSVERFVENAIKSAKNFKIKTISIDEPSLGINPEIQ 177 (344)
T ss_pred ------CCCeEEEec---CHHHHHHH---HcCCccccchHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCcccccCCccc
Confidence 011122333 57532111 1222 3322 1123456677888899999999999843 3333
Q ss_pred -CHHHHHHHHHHHHH----hCCCCcEEEEEEEcCCCcccCCCCHHHHH-HHhhcCCCceEEEECCC-ChhhHHHHHHHH-
Q 019107 192 -NKLEAKAYAELLEE----EGITIPAWFSFNSKDGINVVSGDSILECA-SIADSCEQVVAVGINCT-SPRFIHGLILSV- 263 (346)
Q Consensus 192 -~~~E~~a~~~a~~~----~~~~~pv~is~~~~~~~~l~~G~~~~~av-~~~~~~~~~~avGvNC~-~p~~~~~~l~~l- 263 (346)
+.+++..+++.+.. .|.+.++.+.. ... ..+....+++.+++-++ .|+.+ .+++..
T Consensus 178 ~~~~~~i~Al~~a~~~a~~~gvdv~i~lH~---------------~l~~~~i~~~~~idvi~~E~A~~~~~L-~~l~~~~ 241 (344)
T PRK06052 178 FSDDEIISALTVASTYARKQGADVEIHLHS---------------PLYYELICETPGINVIGVESAATPSYL-DLIDKKV 241 (344)
T ss_pred cCHHHHHHHHHHHHhhhccCCcceEEEEeh---------------HhhHHHHhcCCCCCEEeeeccCChHHH-HHHhhhh
Confidence 55666666665511 23223333222 233 33444345999999998 56544 444432
Q ss_pred -hhhcCCc--EEEeeC--CC--Ccccc--ccccccc--------cCCCChHHHHHHHHHHHH---cCCeEEeecCCCc
Q 019107 264 -RKVTSKP--VIIYPN--SG--ETYNA--ELKKWVE--------STGVRDEDFVSYIGKWRD---AGASLFGGCCRTT 321 (346)
Q Consensus 264 -~~~~~~p--l~vypN--~g--~~~~~--~~~~~~~--------~~~~~~~~~~~~~~~~~~---~G~~ivGGCCGt~ 321 (346)
.. .++. ++|.-- .. ..++. .++.|.. ...-+++++.+.+++.++ ..--+|.=-||--
T Consensus 242 ~e~-~dk~ig~GV~dtd~~~~~~~~~~~~~~n~~~~~~~~~~~~~~VEsveEI~~rI~~ale~i~~e~lwVNPDCGLK 318 (344)
T PRK06052 242 LED-TDTFLRVGVARTDIFSLIAILNEKYGTNAWKDKEYLQEIVTELETPEVIKKRLEKAYSIFGDRIKYVGPDCGLG 318 (344)
T ss_pred hhh-cCCceEEeEEEchhhcchhhhhhhcccccccchhhccccCCCCCCHHHHHHHHHHHHHhCChhhEEECCCCCCC
Confidence 11 1333 344332 10 01111 1234643 122456778777666553 3456677788854
No 351
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.16 E-value=1e+02 Score=29.29 Aligned_cols=61 Identities=18% Similarity=0.183 Sum_probs=40.4
Q ss_pred HHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECC
Q 019107 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC 250 (346)
+....+.|+|+|.+..| ++++++.+++..+ + +.|+.+| .|-++..+.+.+. .++++|.+-+
T Consensus 202 a~eA~~~gaD~I~LD~~-~~e~l~~~v~~~~--~-~i~leAs----------GGIt~~ni~~~a~--tGvD~Isvg~ 262 (277)
T PRK05742 202 LRQALAAGADIVMLDEL-SLDDMREAVRLTA--G-RAKLEAS----------GGINESTLRVIAE--TGVDYISIGA 262 (277)
T ss_pred HHHHHHcCCCEEEECCC-CHHHHHHHHHHhC--C-CCcEEEE----------CCCCHHHHHHHHH--cCCCEEEECh
Confidence 33355688999999775 7778887777543 2 4665543 3667666666553 4778877766
No 352
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=48.13 E-value=2.2e+02 Score=25.97 Aligned_cols=141 Identities=12% Similarity=0.110 Sum_probs=72.5
Q ss_pred HHHHHHHhCCCCEEEE-ccCCC----HHHHHHHHHHHHHhCCCCcEEEEEEEc-------CCCcccCC-CCHHHHHHHhh
Q 019107 172 RRVLILANSGADLIAF-ETIPN----KLEAKAYAELLEEEGITIPAWFSFNSK-------DGINVVSG-DSILECASIAD 238 (346)
Q Consensus 172 ~~i~~l~~~gvD~i~~-ET~~~----~~E~~a~~~a~~~~~~~~pv~is~~~~-------~~~~l~~G-~~~~~av~~~~ 238 (346)
..++..++.||+++-+ |-=.+ .+.++.+..+.++++ .|++|.-.++ +.-++-.. .++.++.+.+.
T Consensus 25 ~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~~--v~liINd~~dlA~~~~AdGVHlGq~D~~~~~ar~~~~ 102 (211)
T COG0352 25 EWVEAALKGGVTAVQLREKDLSDEEYLALAEKLRALCQKYG--VPLIINDRVDLALAVGADGVHLGQDDMPLAEARELLG 102 (211)
T ss_pred HHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHHHHHHHhC--CeEEecCcHHHHHhCCCCEEEcCCcccchHHHHHhcC
Confidence 4677788899999854 32222 234455556666655 8888766442 11233222 34555555442
Q ss_pred cCCCceEEEECCCChhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeEEeecC
Q 019107 239 SCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCC 318 (346)
Q Consensus 239 ~~~~~~avGvNC~~p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivGGCC 318 (346)
. -.-||+.|.+.+.+..+.+. ....+++ |.+|...++.-.+. .. -++...+.+....-+-.|||
T Consensus 103 ~---~~iIG~S~h~~eea~~A~~~----g~DYv~~----GpifpT~tK~~~~~--~G-~~~l~~~~~~~~iP~vAIGG-- 166 (211)
T COG0352 103 P---GLIIGLSTHDLEEALEAEEL----GADYVGL----GPIFPTSTKPDAPP--LG-LEGLREIRELVNIPVVAIGG-- 166 (211)
T ss_pred C---CCEEEeecCCHHHHHHHHhc----CCCEEEE----CCcCCCCCCCCCCc--cC-HHHHHHHHHhCCCCEEEEcC--
Confidence 2 24789999876655444222 1233443 44444333221111 11 12233322222233455775
Q ss_pred CCchHHHHHHHHH
Q 019107 319 RTTPNTIKAISRV 331 (346)
Q Consensus 319 Gt~P~hI~al~~~ 331 (346)
.+++.+..+.+.
T Consensus 167 -i~~~nv~~v~~~ 178 (211)
T COG0352 167 -INLENVPEVLEA 178 (211)
T ss_pred -CCHHHHHHHHHh
Confidence 999999888664
No 353
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=48.10 E-value=2.4e+02 Score=26.47 Aligned_cols=149 Identities=16% Similarity=0.088 Sum_probs=80.0
Q ss_pred ChHHHHHHHHHHHHhhcceeeccccccCHHhHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCC
Q 019107 53 SPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSR 132 (346)
Q Consensus 53 ~Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~ 132 (346)
+.+.+++.-+.++++|++-|..+--..--. -++.++-+++.+.+++.+ .++
T Consensus 17 D~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~-----~Ls~~Er~~~~~~~~~~~------------------------~~~ 67 (285)
T TIGR00674 17 DFAALEKLIDFQIENGTDAIVVVGTTGESP-----TLSHEEHKKVIEFVVDLV------------------------NGR 67 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcccc-----cCCHHHHHHHHHHHHHHh------------------------CCC
Confidence 556777777788899999776542221111 234455566655555432 122
Q ss_pred CcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccC----CCHHHHHHHHHHHHHhCC
Q 019107 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETI----PNKLEAKAYAELLEEEGI 208 (346)
Q Consensus 133 ~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~----~~~~E~~a~~~a~~~~~~ 208 (346)
-.+|+| +|.. +.++..+ +++...+.|+|.+++=.= ++.+|+....+.+.+..
T Consensus 68 ~~vi~g-v~~~------------------s~~~~i~----~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~- 123 (285)
T TIGR00674 68 VPVIAG-TGSN------------------ATEEAIS----LTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEV- 123 (285)
T ss_pred CeEEEe-CCCc------------------cHHHHHH----HHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcC-
Confidence 345566 3221 3445443 677778899999986421 35667766666665543
Q ss_pred CCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEE-CCC-ChhhHHHHH
Q 019107 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI-NCT-SPRFIHGLI 260 (346)
Q Consensus 209 ~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGv-NC~-~p~~~~~~l 260 (346)
++|+++-=.....+ ..-++. .+..+.+. +-.+|+ +++ ....+..++
T Consensus 124 ~~pi~lYn~P~~tg---~~l~~~-~l~~L~~~--~~v~giK~s~~d~~~~~~l~ 171 (285)
T TIGR00674 124 DLPIILYNVPSRTG---VSLYPE-TVKRLAEE--PNIVAIKEATGNLERISEIK 171 (285)
T ss_pred CCCEEEEECcHHhc---CCCCHH-HHHHHHcC--CCEEEEEeCCCCHHHHHHHH
Confidence 58987543221112 123443 33334332 346677 344 344444443
No 354
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=47.93 E-value=2.4e+02 Score=26.50 Aligned_cols=157 Identities=14% Similarity=0.101 Sum_probs=85.5
Q ss_pred HHHHHHHHHhCCCCEEEEc----------------------cCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCC
Q 019107 170 HRRRVLILANSGADLIAFE----------------------TIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSG 227 (346)
Q Consensus 170 ~~~~i~~l~~~gvD~i~~E----------------------T~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G 227 (346)
..+.++.|.++|||+|=+- --.+++++..+++.+++...+.|+|+--..+. -...|
T Consensus 26 ~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~--i~~~G 103 (259)
T PF00290_consen 26 TLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNP--IFQYG 103 (259)
T ss_dssp HHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHH--HHHH-
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccH--Hhccc
Confidence 3446778888999998322 22255555556666673345799886654321 11123
Q ss_pred CCHHHHHHHhhcCCCceEEEECCCChhhHHHHHHHHhhhc-CCcEEEeeCCCCcc----cccccccc--------cc-CC
Q 019107 228 DSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVT-SKPVIIYPNSGETY----NAELKKWV--------ES-TG 293 (346)
Q Consensus 228 ~~~~~av~~~~~~~~~~avGvNC~~p~~~~~~l~~l~~~~-~~pl~vypN~g~~~----~~~~~~~~--------~~-~~ 293 (346)
++..++.+.+ .+++++-+==-+++....+.+.+.++. +.-..+.|+..... ......|+ ++ +.
T Consensus 104 --~e~F~~~~~~-aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~ 180 (259)
T PF00290_consen 104 --IERFFKEAKE-AGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVTGSRT 180 (259)
T ss_dssp --HHHHHHHHHH-HTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSSSTTS
T ss_pred --hHHHHHHHHH-cCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCCCCcc
Confidence 3556666655 478887776666676666666555442 22245677653210 00001111 11 11
Q ss_pred CChHHHHHHHHHHHHc-CCeEEeecCCCchHHHHHHHHH
Q 019107 294 VRDEDFVSYIGKWRDA-GASLFGGCCRTTPNTIKAISRV 331 (346)
Q Consensus 294 ~~~~~~~~~~~~~~~~-G~~ivGGCCGt~P~hI~al~~~ 331 (346)
.-+....+++++.++. ...++-|=.=.+|+|++++...
T Consensus 181 ~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~~~ 219 (259)
T PF00290_consen 181 ELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLAAG 219 (259)
T ss_dssp SCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHHcc
Confidence 1245566777666654 4777777777899999998743
No 355
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=47.92 E-value=1.5e+02 Score=28.31 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=46.1
Q ss_pred HHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcC------------------------CCcccCCCCHHH
Q 019107 177 LANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKD------------------------GINVVSGDSILE 232 (346)
Q Consensus 177 l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~------------------------~~~l~~G~~~~~ 232 (346)
..+.+.=+..|.+ .+++-++++++++.+.+ .|+++.++-.. --+|.+|.+++.
T Consensus 13 A~~~~yAV~AfN~-~n~e~~~avi~AAee~~--sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~ 89 (286)
T PRK12738 13 AQANGYAVPAFNI-HNAETIQAILEVCSEMR--SPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDD 89 (286)
T ss_pred HHHCCceEEEEEe-CCHHHHHHHHHHHHHHC--CCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHH
Confidence 3344545555554 46777777777777755 67777764311 013568888887
Q ss_pred HHHHhhcCCCceEEEECCCC
Q 019107 233 CASIADSCEQVVAVGINCTS 252 (346)
Q Consensus 233 av~~~~~~~~~~avGvNC~~ 252 (346)
+.+.++ .+...|++-+++
T Consensus 90 i~~ai~--~GFtSVM~DgS~ 107 (286)
T PRK12738 90 IRRKVH--AGVRSAMIDGSH 107 (286)
T ss_pred HHHHHH--cCCCeEeecCCC
Confidence 777775 377889999985
No 356
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=47.46 E-value=2.4e+02 Score=26.36 Aligned_cols=96 Identities=24% Similarity=0.235 Sum_probs=55.0
Q ss_pred HHHHHhCCCCEEEEcc-----------CCC----HHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhh
Q 019107 174 VLILANSGADLIAFET-----------IPN----KLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET-----------~~~----~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~ 238 (346)
++...+.|+|.|-+-. -.+ +++++.+++.+++.+ +.+.+++. +..+. +-+.+.+.++.+.
T Consensus 77 i~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G--~~v~~~~e--da~r~-~~~~l~~~~~~~~ 151 (262)
T cd07948 77 ARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKG--IEVRFSSE--DSFRS-DLVDLLRVYRAVD 151 (262)
T ss_pred HHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC--CeEEEEEE--eeCCC-CHHHHHHHHHHHH
Confidence 4445668999876532 112 333555556677766 55555553 22211 1122344455544
Q ss_pred cCCCceEEEECCC----ChhhHHHHHHHHhhhcCCcEEEee
Q 019107 239 SCEQVVAVGINCT----SPRFIHGLILSVRKVTSKPVIIYP 275 (346)
Q Consensus 239 ~~~~~~avGvNC~----~p~~~~~~l~~l~~~~~~pl~vyp 275 (346)
. .+++.|.+-=+ .|+.+..+++.+++..+.|+.+..
T Consensus 152 ~-~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~~~i~~H~ 191 (262)
T cd07948 152 K-LGVNRVGIADTVGIATPRQVYELVRTLRGVVSCDIEFHG 191 (262)
T ss_pred H-cCCCEEEECCcCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4 36666655443 499999999999887667776654
No 357
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=47.38 E-value=2.1e+02 Score=25.55 Aligned_cols=96 Identities=18% Similarity=0.166 Sum_probs=55.4
Q ss_pred HHHHHHHhCCCCEEEEcc----------------CCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHH
Q 019107 172 RRVLILANSGADLIAFET----------------IPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECAS 235 (346)
Q Consensus 172 ~~i~~l~~~gvD~i~~ET----------------~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~ 235 (346)
+.++.+.++|+|.|=+-. ..+.+.+..+++++++.- ..|+.+-+....+. . +...+.+.
T Consensus 71 ~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~-~~~v~vk~r~~~~~---~-~~~~~~~~ 145 (231)
T cd02801 71 EAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAV-PIPVTVKIRLGWDD---E-EETLELAK 145 (231)
T ss_pred HHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhc-CCCEEEEEeeccCC---c-hHHHHHHH
Confidence 345556668999985531 126667777888887643 36776655432111 0 24556666
Q ss_pred HhhcCCCceEEEECCCCh------hhHHHHHHHHhhhcCCcEEE
Q 019107 236 IADSCEQVVAVGINCTSP------RFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 236 ~~~~~~~~~avGvNC~~p------~~~~~~l~~l~~~~~~pl~v 273 (346)
.+.+ .+++.+-+.+... ..-...++.+++..+.|+++
T Consensus 146 ~l~~-~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~ 188 (231)
T cd02801 146 ALED-AGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIA 188 (231)
T ss_pred HHHH-hCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEE
Confidence 6655 4778886666421 12234556666666677654
No 358
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=47.10 E-value=2.7e+02 Score=26.82 Aligned_cols=112 Identities=14% Similarity=0.170 Sum_probs=66.2
Q ss_pred CCCHHHH---HHHHHHHHHHHHhCCCCEEEEcc------------CCC-------------HHHHHHHHHHHHH-hCCCC
Q 019107 160 AVSLETL---KEFHRRRVLILANSGADLIAFET------------IPN-------------KLEAKAYAELLEE-EGITI 210 (346)
Q Consensus 160 ~~~~~e~---~~~~~~~i~~l~~~gvD~i~~ET------------~~~-------------~~E~~a~~~a~~~-~~~~~ 210 (346)
.++.+|+ .+.|.+.++.+.++|.|.+=+-. ..+ ...+..+++++++ .+.+.
T Consensus 143 ~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~ 222 (336)
T cd02932 143 ELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDK 222 (336)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCc
Confidence 4665554 55677778888889999995542 111 2234566677776 34457
Q ss_pred cEEEEEEEcCCCcccCCCCHHHHHHHhhc--CCCceEEEEC---CC-------ChhhHHHHHHHHhhhcCCcEEE
Q 019107 211 PAWFSFNSKDGINVVSGDSILECASIADS--CEQVVAVGIN---CT-------SPRFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 211 pv~is~~~~~~~~l~~G~~~~~av~~~~~--~~~~~avGvN---C~-------~p~~~~~~l~~l~~~~~~pl~v 273 (346)
|+.+-++..+. ...|.++.+++..+.. ..+++.|-+- ++ .+......++.+++..+.|+++
T Consensus 223 ~v~vri~~~~~--~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~ 295 (336)
T cd02932 223 PLFVRISATDW--VEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIA 295 (336)
T ss_pred eEEEEEccccc--CCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEE
Confidence 88877765432 2356677777665432 1356666542 11 0122345667777777888765
No 359
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=47.03 E-value=2.2e+02 Score=25.80 Aligned_cols=152 Identities=18% Similarity=0.168 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEE-----EEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCC--HHHHH
Q 019107 162 SLETLKEFHRRRVLILANSGADLI-----AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDS--ILECA 234 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~~~gvD~i-----~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~--~~~av 234 (346)
+.+++.. +++.+ ..|+|++ .++...+...+..+.+.++..-.++|+++++....+|=...+.. -.+..
T Consensus 10 ~~~~~~~----~~~~~-~~~aD~vElRlD~l~~~~~~~~~~~~~~~~~~~~~~~piI~T~R~~~eGG~~~~~~~~~~~ll 84 (228)
T TIGR01093 10 DLEEALA----TAEKI-CKGADIVELRVDLLKDPSSNNDVDALIEQLSQLRPDKPLIFTIRTISEGGKFPGNEEEYLEEL 84 (228)
T ss_pred CHHHHHH----HHHHh-ccCCCEEEEEechhcccCcHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHHHHHHH
Confidence 4555443 45555 5788887 23554455445445554443223589999997655432222221 12233
Q ss_pred HHhhcCCCceEEEECCC-ChhhHHHHHHHHhhhcCCcEEE-eeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCe
Q 019107 235 SIADSCEQVVAVGINCT-SPRFIHGLILSVRKVTSKPVII-YPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGAS 312 (346)
Q Consensus 235 ~~~~~~~~~~avGvNC~-~p~~~~~~l~~l~~~~~~pl~v-ypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 312 (346)
..+-...+++.|=|--. ..+.+..+++..... ..-+++ |.|-. +. .+.+++.+...+..+.|+.
T Consensus 85 ~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~-~~kvI~S~H~f~-------~t------p~~~~l~~~~~~~~~~gaD 150 (228)
T TIGR01093 85 KRAADSPGPDFVDIELFLPDDAVKELINIAKKG-GTKIIMSYHDFQ-------KT------PSWEEIVERLEKALSYGAD 150 (228)
T ss_pred HHHHHhCCCCEEEEEccCCHHHHHHHHHHHHHC-CCEEEEeccCCC-------CC------CCHHHHHHHHHHHHHhCCC
Confidence 32211235777777765 345556666654432 223333 32221 01 1234566666667777766
Q ss_pred EEeecCC-CchHHHHHHHHHH
Q 019107 313 LFGGCCR-TTPNTIKAISRVL 332 (346)
Q Consensus 313 ivGGCCG-t~P~hI~al~~~~ 332 (346)
++==.+- .++++...|-+..
T Consensus 151 ivKia~~a~~~~D~~~ll~~~ 171 (228)
T TIGR01093 151 IVKIAVMANSKEDVLTLLEIT 171 (228)
T ss_pred EEEEEeccCCHHHHHHHHHHH
Confidence 6543333 3555555554443
No 360
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=46.98 E-value=96 Score=29.21 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=38.6
Q ss_pred HHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEE
Q 019107 177 LANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI 248 (346)
Q Consensus 177 l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGv 248 (346)
..+.|+|+|.+..| .+++++.+++.+++. .++|+.++ .|-++..+...+. .++++|.+
T Consensus 197 A~~~gaD~I~ld~~-~~e~l~~~v~~i~~~-~~i~i~as----------GGIt~~ni~~~a~--~Gad~Isv 254 (269)
T cd01568 197 ALEAGADIIMLDNM-SPEELKEAVKLLKGL-PRVLLEAS----------GGITLENIRAYAE--TGVDVIST 254 (269)
T ss_pred HHHcCCCEEEECCC-CHHHHHHHHHHhccC-CCeEEEEE----------CCCCHHHHHHHHH--cCCCEEEE
Confidence 34578999999997 557777777766543 23554432 4677777777664 46777765
No 361
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=46.28 E-value=3.6e+02 Score=27.97 Aligned_cols=46 Identities=15% Similarity=0.047 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhCCCCEEEEccC---CCHHHHHHHHHHHHHhCCCCcEEEEE
Q 019107 168 EFHRRRVLILANSGADLIAFETI---PNKLEAKAYAELLEEEGITIPAWFSF 216 (346)
Q Consensus 168 ~~~~~~i~~l~~~gvD~i~~ET~---~~~~E~~a~~~a~~~~~~~~pv~is~ 216 (346)
+.-.++++.+.+.|+|+|=+-.- |..++++.+++++++.. +.| ||+
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~-~~p--ISI 213 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDAL-DSP--VIA 213 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhC-CCc--EEE
Confidence 44556788888899999976544 55566888888888642 344 566
No 362
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=46.17 E-value=37 Score=32.56 Aligned_cols=39 Identities=23% Similarity=0.224 Sum_probs=31.2
Q ss_pred HHHHHHHhCCCCEEEEcc-CCCHHHHHHHHHHHHHhCCCCcEE
Q 019107 172 RRVLILANSGADLIAFET-IPNKLEAKAYAELLEEEGITIPAW 213 (346)
Q Consensus 172 ~~i~~l~~~gvD~i~~ET-~~~~~E~~a~~~a~~~~~~~~pv~ 213 (346)
+|+++..++|+|.+++|. ..+.+|++.+++.+. ..+|+.
T Consensus 170 ~Ra~aY~eAGAD~ifv~~~~~~~~ei~~~~~~~~---~p~pv~ 209 (290)
T TIGR02321 170 RRGQAYEEAGADAILIHSRQKTPDEILAFVKSWP---GKVPLV 209 (290)
T ss_pred HHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhcC---CCCCeE
Confidence 478899999999999997 589999888877553 236775
No 363
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=46.05 E-value=2.4e+02 Score=28.32 Aligned_cols=127 Identities=14% Similarity=0.174 Sum_probs=72.9
Q ss_pred HHhCCCCEEEEccC-CCHHHHHHHHHHHHHhCCCCc--EEEEEEEcCCC-----------cccCCCCHHHHHHHh--hcC
Q 019107 177 LANSGADLIAFETI-PNKLEAKAYAELLEEEGITIP--AWFSFNSKDGI-----------NVVSGDSILECASIA--DSC 240 (346)
Q Consensus 177 l~~~gvD~i~~ET~-~~~~E~~a~~~a~~~~~~~~p--v~is~~~~~~~-----------~l~~G~~~~~av~~~--~~~ 240 (346)
....+|-+|..-.- |+.+++|+..-++..++ ..| .++.+|.+... -..+-.++.++.+.+ ...
T Consensus 209 ~~~~~IPvi~g~~~~p~~d~lK~lgAA~Atsg-s~~m~Hi~GvTPEa~~~~~a~~~~~e~i~i~~~dl~~~~~~l~~~~~ 287 (400)
T PF04412_consen 209 KVGDRIPVITGLERRPSEDDLKALGAAMATSG-SVAMFHIVGVTPEAPTLEAAFGGKAERITITDADLEEVYEELNTAGD 287 (400)
T ss_pred hcCCCcCeEeCCCCCCCHHHHHHHhhhhhccc-ceeeEEEeCCCCCCCcchhhhcCCceEEEeCHHHHHHHHHHhccCCC
Confidence 44456777754444 88999999998888876 344 33444433111 011223444555555 222
Q ss_pred CCceEEEECCC--ChhhHHHHHHHHhhhc---CCcEEEeeCCCCccccccccccccCCCChHHHHH--HHHHHHHcCCeE
Q 019107 241 EQVVAVGINCT--SPRFIHGLILSVRKVT---SKPVIIYPNSGETYNAELKKWVESTGVRDEDFVS--YIGKWRDAGASL 313 (346)
Q Consensus 241 ~~~~avGvNC~--~p~~~~~~l~~l~~~~---~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~G~~i 313 (346)
..++.|-+-|- +.+.+..+.+.++... +.|+.+.-... ..+...+ ++++..+.|+++
T Consensus 288 ~~~D~V~lGcPH~S~~El~~ia~ll~gr~~~~~~~~~i~t~~~----------------v~~~a~~~G~~~~le~~G~~i 351 (400)
T PF04412_consen 288 EKVDLVALGCPHLSLEELREIAELLEGRKVHPNVPLWITTSRA----------------VYELAERMGYVERLEKAGVQI 351 (400)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCCCCCceEEEECCHH----------------HHHHHHhCCHHHHHHHcCCEE
Confidence 46899999995 4666666666665432 33443331110 0122223 566778899999
Q ss_pred EeecCCC
Q 019107 314 FGGCCRT 320 (346)
Q Consensus 314 vGGCCGt 320 (346)
+-++|=.
T Consensus 352 v~dTC~~ 358 (400)
T PF04412_consen 352 VTDTCMV 358 (400)
T ss_pred Eccccce
Confidence 9999964
No 364
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=46.01 E-value=1.1e+02 Score=30.60 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=14.8
Q ss_pred CeEEeecCCC--chHHHHHHHHHHcC
Q 019107 311 ASLFGGCCRT--TPNTIKAISRVLSN 334 (346)
Q Consensus 311 ~~ivGGCCGt--~P~hI~al~~~~~~ 334 (346)
++|||.++-+ .|.++++|++.+..
T Consensus 165 VNiiG~~~~~~~~~~d~~ei~~lL~~ 190 (430)
T cd01981 165 VNLIGPSSLGFHNRHDCRELKRLLHT 190 (430)
T ss_pred EEEEcCCCCCCCCcchHHHHHHHHHH
Confidence 7777776542 36666666666553
No 365
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=45.89 E-value=1.5e+02 Score=28.05 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=34.0
Q ss_pred HhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEE
Q 019107 178 ANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAV 246 (346)
Q Consensus 178 ~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~av 246 (346)
.+.|+|+|.+..| ...+++.+++.+++...++|++++ .|-++..+.+.+. .++++|
T Consensus 200 ~~~gaD~I~ld~~-~p~~l~~~~~~~~~~~~~i~i~As----------GGI~~~ni~~~~~--~Gvd~I 255 (272)
T cd01573 200 AEAGADILQLDKF-SPEELAELVPKLRSLAPPVLLAAA----------GGINIENAAAYAA--AGADIL 255 (272)
T ss_pred HHcCCCEEEECCC-CHHHHHHHHHHHhccCCCceEEEE----------CCCCHHHHHHHHH--cCCcEE
Confidence 3578888888876 446667666666553224555533 3566666666554 356666
No 366
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=45.83 E-value=17 Score=35.22 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=22.2
Q ss_pred CCChHHHHHHHHHHHHhhcceeecc
Q 019107 51 VSSPHLVRKVHLDYLDAGANIIITA 75 (346)
Q Consensus 51 l~~Pe~V~~iH~~yl~AGA~iI~Tn 75 (346)
++....|.+.+..+-+||||+|+|.
T Consensus 286 ~d~~~~~~Esl~~ikRAGAd~IiTY 310 (320)
T cd04823 286 LDEDKVMLESLLAFKRAGADGILTY 310 (320)
T ss_pred CcHHHHHHHHHHHHHhcCCCEEeec
Confidence 4667889999999999999999984
No 367
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=45.82 E-value=2.4e+02 Score=25.74 Aligned_cols=148 Identities=18% Similarity=0.235 Sum_probs=70.7
Q ss_pred HHHHHHHHHhCCCCEEEEccC-----CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCc----------------ccCCC
Q 019107 170 HRRRVLILANSGADLIAFETI-----PNKLEAKAYAELLEEEGITIPAWFSFNSKDGIN----------------VVSGD 228 (346)
Q Consensus 170 ~~~~i~~l~~~gvD~i~~ET~-----~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~----------------l~~G~ 228 (346)
..++++.+.++|+|.+-+--| |++.=--..++.+++...+.|+=+.+-+.+..+ ...-.
T Consensus 14 l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H~Ea~~ 93 (220)
T PRK08883 14 LGEDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHVEASE 93 (220)
T ss_pred HHHHHHHHHHcCCCEEEEecccCcccCccccCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcc
Confidence 446788888899998865432 343322334455555311355444443322100 00012
Q ss_pred CHHHHHHHhhcCCCceEEEECCC-ChhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHH
Q 019107 229 SILECASIADSCEQVVAVGINCT-SPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWR 307 (346)
Q Consensus 229 ~~~~av~~~~~~~~~~avGvNC~-~p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (346)
.+...+..+++..--.++-+|.. +.+.+..+++.+... .-+.+.|--|. +.|.+. .-+-.+.+++++
T Consensus 94 ~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~v--lvMtV~PGfgG------q~fi~~----~lekI~~l~~~~ 161 (220)
T PRK08883 94 HVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLI--LLMSVNPGFGG------QSFIPH----TLDKLRAVRKMI 161 (220)
T ss_pred cHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeE--EEEEecCCCCC------ceecHh----HHHHHHHHHHHH
Confidence 34556666655322346778885 446666666654211 11234553321 223221 111233344554
Q ss_pred H-cC--CeE-EeecCCCchHHHHHHHHH
Q 019107 308 D-AG--ASL-FGGCCRTTPNTIKAISRV 331 (346)
Q Consensus 308 ~-~G--~~i-vGGCCGt~P~hI~al~~~ 331 (346)
+ .| ..| +.| |.+++.|+.+.++
T Consensus 162 ~~~~~~~~I~vdG--GI~~eni~~l~~a 187 (220)
T PRK08883 162 DESGRDIRLEIDG--GVKVDNIREIAEA 187 (220)
T ss_pred HhcCCCeeEEEEC--CCCHHHHHHHHHc
Confidence 3 33 222 333 5889998888654
No 368
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=45.66 E-value=17 Score=35.05 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.1
Q ss_pred CCChHHHHHHHHHHHHhhcceeecc
Q 019107 51 VSSPHLVRKVHLDYLDAGANIIITA 75 (346)
Q Consensus 51 l~~Pe~V~~iH~~yl~AGA~iI~Tn 75 (346)
++....|.+.+..|-+||||+|+|.
T Consensus 281 id~~~~~~Esl~~~kRAGAd~IiTY 305 (314)
T cd00384 281 IDEERVVLESLTSIKRAGADLIITY 305 (314)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEee
Confidence 4667789999999999999999974
No 369
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=45.59 E-value=3.6e+02 Score=27.76 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhcceeeccccccC
Q 019107 56 LVRKVHLDYLDAGANIIITASYQAT 80 (346)
Q Consensus 56 ~V~~iH~~yl~AGA~iI~TnTy~as 80 (346)
.+.+.-..++++|+++|.-.+=+.+
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~a~~~ 251 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDTAHGH 251 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEeccCCc
Confidence 3556677888899998876655543
No 370
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=45.45 E-value=2.4e+02 Score=26.11 Aligned_cols=99 Identities=22% Similarity=0.212 Sum_probs=62.6
Q ss_pred HHHHHHHHHhC-CCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEE
Q 019107 170 HRRRVLILANS-GADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI 248 (346)
Q Consensus 170 ~~~~i~~l~~~-gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGv 248 (346)
|-+.+..+.+. ++|++=+|-.......+.++...++.+ +++|- ++-.++++-+.+.+....+.. .+++.+=|
T Consensus 80 ~i~ll~~la~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~----vI~Sy--H~F~~TP~~~~i~~~l~km~~-~~aDivKi 152 (231)
T COG0710 80 YIELLKKLAELNGPDYIDIELSSPEDDVKEIIKFAKKHG----VIVSY--HDFEKTPPLEEIIERLDKMES-LGADIVKI 152 (231)
T ss_pred HHHHHHHHHhhcCCCEEEEEccCcchhHHHHHhccccCC----EEEEe--ccCCCCCcHHHHHHHHHHHHh-hCCCeEEE
Confidence 44455566664 599999997766555555666555433 77776 333333333335566666554 46788888
Q ss_pred CCC--ChhhHHHHHHHHhhh--cCCcEEEee
Q 019107 249 NCT--SPRFIHGLILSVRKV--TSKPVIIYP 275 (346)
Q Consensus 249 NC~--~p~~~~~~l~~l~~~--~~~pl~vyp 275 (346)
-|. +.+.++.+|+..+.. ...|+++.+
T Consensus 153 Avm~~~~~DvL~ll~~~~~~~~~~~p~i~i~ 183 (231)
T COG0710 153 AVMPQSKEDVLDLLEATREFKEAEKPVITIS 183 (231)
T ss_pred EecCCCHHHHHHHHHHHHhccccCCCEEEEe
Confidence 886 467888888877653 478877665
No 371
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=45.42 E-value=1.5e+02 Score=29.85 Aligned_cols=84 Identities=12% Similarity=0.067 Sum_probs=44.9
Q ss_pred eEEEecchHHHHHHc-CC---CCCCCccchhccC--CChHHHHHHHHHHHHhhcceeeccccccCHHh-HHh----C-C-
Q 019107 22 YSVVDGGFATELERH-GA---DLNDPLWSAKCLV--SSPHLVRKVHLDYLDAGANIIITASYQATIQG-FEA----K-G- 88 (346)
Q Consensus 22 ~lilDGg~gt~L~~~-G~---~~~~~lwsa~~ll--~~Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~-l~~----~-g- 88 (346)
++++.=|-|..+... |- |+-.- +. -..+ .||.+|+.+.+ ++.==....|-|...+.. |+. . +
T Consensus 25 ~~~~~~G~G~~v~D~~G~~YlDf~~G-ia-v~~lGH~hP~iv~al~~---Q~~kl~h~sn~~~~~~~~~la~~L~~~s~~ 99 (404)
T COG4992 25 PVVIVRGEGAYVWDQQGREYLDFAAG-IA-VNNLGHCHPALVEALKE---QAEKLWHVSNLFYNEPQAELAEKLVELSPF 99 (404)
T ss_pred ceeEEeccccEEECCCCCEeeeeccc-ee-eeccCCCCHHHHHHHHH---HHHHhhhcccccCChHHHHHHHHHHhhCcc
Confidence 455665677766543 32 22110 11 1112 58999988877 444345566666543321 211 1 1
Q ss_pred CCH----HHHHHHHHHHHHHHHHHHH
Q 019107 89 FST----EEAEALLRRSVEIACEARE 110 (346)
Q Consensus 89 ~~~----~~~~~l~~~av~lA~~A~~ 110 (346)
.+. ....|.|+.|+++||+...
T Consensus 100 ~d~vff~NSGaEA~EaAiKlARk~~~ 125 (404)
T COG4992 100 ADRVFFCNSGAEANEAALKLARKYTG 125 (404)
T ss_pred ccEEEEcCCcHHHHHHHHHHHHHHcC
Confidence 110 1356789999999998864
No 372
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=45.31 E-value=2.7e+02 Score=26.22 Aligned_cols=142 Identities=17% Similarity=0.121 Sum_probs=75.6
Q ss_pred ChHHHHHHHHHHHHh-hcceeeccccccCHHhHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 019107 53 SPHLVRKVHLDYLDA-GANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISS 131 (346)
Q Consensus 53 ~Pe~V~~iH~~yl~A-GA~iI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~ 131 (346)
+.+.+++.-+.++++ |++-|..+--..-... ++.++-.++.+.+++.+ .+
T Consensus 19 D~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~-----Lt~~Er~~~~~~~~~~~------------------------~~ 69 (288)
T cd00954 19 NEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFL-----LSVEERKQIAEIVAEAA------------------------KG 69 (288)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECcCCcCccc-----CCHHHHHHHHHHHHHHh------------------------CC
Confidence 456778888888899 9997765543322222 23345555555554432 12
Q ss_pred CCcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcc----CCCHHHHHHHHHHHHHhC
Q 019107 132 RPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFET----IPNKLEAKAYAELLEEEG 207 (346)
Q Consensus 132 ~~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET----~~~~~E~~a~~~a~~~~~ 207 (346)
+-.+|+| +|. .+.++..+ +++...+.|+|.+++=. -++-+|+....+.+.+..
T Consensus 70 ~~~viag-v~~------------------~~~~~ai~----~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~ 126 (288)
T cd00954 70 KVTLIAH-VGS------------------LNLKESQE----LAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAA 126 (288)
T ss_pred CCeEEec-cCC------------------CCHHHHHH----HHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 2345566 222 13455444 56667789999997521 135567766666654432
Q ss_pred CCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCC
Q 019107 208 ITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTS 252 (346)
Q Consensus 208 ~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~ 252 (346)
.++|+++ ..... ..-..-+++ .+..+.+. +-.+|+--++
T Consensus 127 ~~lpi~i-Yn~P~--~tg~~l~~~-~~~~L~~~--pnivgiK~s~ 165 (288)
T cd00954 127 ASLPMII-YHIPA--LTGVNLTLE-QFLELFEI--PNVIGVKFTA 165 (288)
T ss_pred CCCCEEE-EeCcc--ccCCCCCHH-HHHHHhcC--CCEEEEEeCC
Confidence 1589997 33221 111223443 33334333 3456666553
No 373
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=45.30 E-value=2.9e+02 Score=26.53 Aligned_cols=97 Identities=9% Similarity=0.002 Sum_probs=62.9
Q ss_pred HHHHHHHhCCCCEEEEccCC--------------CHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHh
Q 019107 172 RRVLILANSGADLIAFETIP--------------NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIA 237 (346)
Q Consensus 172 ~~i~~l~~~gvD~i~~ET~~--------------~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~ 237 (346)
+-++.+.++||-.|.+|-.. +.+|...=++++++...+.+++|--.. +..+.. .++++++..
T Consensus 97 r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART--Da~~~~--g~deAI~Ra 172 (292)
T PRK11320 97 RTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMART--DALAVE--GLDAAIERA 172 (292)
T ss_pred HHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEec--Cccccc--CHHHHHHHH
Confidence 35777888999999999742 566777667777664334667765543 333333 488888876
Q ss_pred hc--CCCceEEEECCC-ChhhHHHHHHHHhhhcCCcEEEeeC
Q 019107 238 DS--CEQVVAVGINCT-SPRFIHGLILSVRKVTSKPVIIYPN 276 (346)
Q Consensus 238 ~~--~~~~~avGvNC~-~p~~~~~~l~~l~~~~~~pl~vypN 276 (346)
.. ..|+++|-+-+. .++.+..+.+. .+.|+++-+-
T Consensus 173 ~aY~eAGAD~ifi~~~~~~~~i~~~~~~----~~~Pl~~n~~ 210 (292)
T PRK11320 173 QAYVEAGADMIFPEAMTELEMYRRFADA----VKVPILANIT 210 (292)
T ss_pred HHHHHcCCCEEEecCCCCHHHHHHHHHh----cCCCEEEEec
Confidence 43 257898888775 45655555544 3678765443
No 374
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=45.03 E-value=17 Score=35.07 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=22.3
Q ss_pred CCChHHHHHHHHHHHHhhcceeecc
Q 019107 51 VSSPHLVRKVHLDYLDAGANIIITA 75 (346)
Q Consensus 51 l~~Pe~V~~iH~~yl~AGA~iI~Tn 75 (346)
++....|.+.+..+-+||||+|+|.
T Consensus 287 iDe~~~~~Esl~~ikRAGAd~IiTY 311 (320)
T cd04824 287 FDLKRAVLEAMTGFRRAGADIIITY 311 (320)
T ss_pred CcHHHHHHHHHHHHHhcCCCEEEee
Confidence 5667899999999999999999984
No 375
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=44.95 E-value=62 Score=30.35 Aligned_cols=48 Identities=21% Similarity=0.133 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEE
Q 019107 169 FHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNS 218 (346)
Q Consensus 169 ~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~ 218 (346)
.|.+.+..+++.|+.+++--|-.+.+|++.+.+++++.+ .|++++..+
T Consensus 80 ~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g--~~v~~a~Nf 127 (266)
T TIGR00036 80 GVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAG--IAAVIAPNF 127 (266)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCC--ccEEEECcc
Confidence 566778888889999988667667888888888877754 888887754
No 376
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=44.78 E-value=2.1e+02 Score=25.63 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=27.1
Q ss_pred HHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhC
Q 019107 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEG 207 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~ 207 (346)
++.+.+.|+|++.+=..+...-++.+++.+++.+
T Consensus 69 ~~~~~~~gad~vTvh~~~g~~~l~~~~~~~~~~~ 102 (213)
T TIGR01740 69 YESKIKQGADMVNVHGVAGSESVEAAKEAASEGG 102 (213)
T ss_pred HHHHHhcCCCEEEEcCCCCHHHHHHHHHHhhcCC
Confidence 4446679999999988888877888888887654
No 377
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=44.73 E-value=2.8e+02 Score=26.30 Aligned_cols=128 Identities=13% Similarity=0.076 Sum_probs=70.4
Q ss_pred CCCEEEEccC-----------CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCC-CceE-EE
Q 019107 181 GADLIAFETI-----------PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCE-QVVA-VG 247 (346)
Q Consensus 181 gvD~i~~ET~-----------~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~-~~~a-vG 247 (346)
++|+|=+-.- .+.+.+..+++++++.- ++|+++-++... +-+.+.++++.+.+.. ++++ +.
T Consensus 119 ~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~-~iPv~vKl~p~~-----~~~~~~~~a~~l~~~~~G~~gi~~ 192 (294)
T cd04741 119 FPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAY-SIPVGVKTPPYT-----DPAQFDTLAEALNAFACPISFITA 192 (294)
T ss_pred cccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhc-CCCEEEEeCCCC-----CHHHHHHHHHHHhccccCCcEEEE
Confidence 6888865421 14677888888888764 699998886532 1123455665554321 4554 33
Q ss_pred ECCCCh----h------------------------hHHHHHHHHhhhcC--CcEEEeeCCCCccccccccccccCCCChH
Q 019107 248 INCTSP----R------------------------FIHGLILSVRKVTS--KPVIIYPNSGETYNAELKKWVESTGVRDE 297 (346)
Q Consensus 248 vNC~~p----~------------------------~~~~~l~~l~~~~~--~pl~vypN~g~~~~~~~~~~~~~~~~~~~ 297 (346)
+|-..+ + .....+.++++..+ .|++. |.|. .+.+
T Consensus 193 ~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig--~GGI--------------~s~~ 256 (294)
T cd04741 193 TNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIG--VGGV--------------LDGR 256 (294)
T ss_pred EccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEE--eCCC--------------CCHH
Confidence 444311 0 01122333333332 34332 2221 2344
Q ss_pred HHHHHHHHHHHcCCeEEeecCCC---chHHHHHHHHHHcC
Q 019107 298 DFVSYIGKWRDAGASLFGGCCRT---TPNTIKAISRVLSN 334 (346)
Q Consensus 298 ~~~~~~~~~~~~G~~ivGGCCGt---~P~hI~al~~~~~~ 334 (346)
+..+ .+..||..|.-|-+. +|..++.|.+.+..
T Consensus 257 da~e----~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~ 292 (294)
T cd04741 257 GAFR----MRLAGASAVQVGTALGKEGPKVFARIEKELED 292 (294)
T ss_pred HHHH----HHHcCCCceeEchhhhhcCchHHHHHHHHHHh
Confidence 4444 345799888877773 79999888877654
No 378
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=44.57 E-value=2.7e+02 Score=26.04 Aligned_cols=85 Identities=19% Similarity=0.257 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHH-HHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcC
Q 019107 162 SLETLKEFHRRRVLILANSGADLIAFETIPNKLEA-KAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSC 240 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~-~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~ 240 (346)
++-|+...|. +.|+|=|+|=.+..-.|- ...++.+++.. .-|+|-|++-..- .+++++-..+.
T Consensus 31 DpVelA~~Y~-------e~GADElvFlDItAs~~gr~~~~~vv~r~A--~~vfiPltVGGGI-----~s~eD~~~ll~-- 94 (256)
T COG0107 31 DPVELAKRYN-------EEGADELVFLDITASSEGRETMLDVVERVA--EQVFIPLTVGGGI-----RSVEDARKLLR-- 94 (256)
T ss_pred ChHHHHHHHH-------HcCCCeEEEEecccccccchhHHHHHHHHH--hhceeeeEecCCc-----CCHHHHHHHHH--
Confidence 4455555554 479999988877766665 34456666654 5577788774322 36777777765
Q ss_pred CCceEEEECCC---ChhhHHHHHHH
Q 019107 241 EQVVAVGINCT---SPRFIHGLILS 262 (346)
Q Consensus 241 ~~~~avGvNC~---~p~~~~~~l~~ 262 (346)
.+++=|-||-. .|+.+..+-+.
T Consensus 95 aGADKVSINsaAv~~p~lI~~~a~~ 119 (256)
T COG0107 95 AGADKVSINSAAVKDPELITEAADR 119 (256)
T ss_pred cCCCeeeeChhHhcChHHHHHHHHH
Confidence 47899999996 46655555444
No 379
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=44.51 E-value=18 Score=34.96 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=22.4
Q ss_pred CCChHHHHHHHHHHHHhhcceeecc
Q 019107 51 VSSPHLVRKVHLDYLDAGANIIITA 75 (346)
Q Consensus 51 l~~Pe~V~~iH~~yl~AGA~iI~Tn 75 (346)
++....|.+.+..|-+||||+|+|.
T Consensus 290 ~d~~~~~~Esl~~~kRAGAd~IiTY 314 (322)
T PRK13384 290 LDERAVVTETLGGLKRAGADLIVSY 314 (322)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEeeh
Confidence 5677899999999999999999974
No 380
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=44.50 E-value=3.2e+02 Score=26.86 Aligned_cols=135 Identities=13% Similarity=0.104 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEE-----ccCCCHHHHHHHHHHHHHhCC---CCcEEEEEEEcCCCcccCCCCHHHHH
Q 019107 163 LETLKEFHRRRVLILANSGADLIAF-----ETIPNKLEAKAYAELLEEEGI---TIPAWFSFNSKDGINVVSGDSILECA 234 (346)
Q Consensus 163 ~~e~~~~~~~~i~~l~~~gvD~i~~-----ET~~~~~E~~a~~~a~~~~~~---~~pv~is~~~~~~~~l~~G~~~~~av 234 (346)
.+++...|++.++.|.++||+.|=+ -+..+..+...+.++.+.... +.++.++..+. . +..++
T Consensus 177 ~~dla~~y~~el~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~l~tyfg--------~-~~~~~ 247 (360)
T cd03312 177 LDKLLPVYKELLKKLAAAGAEWVQIDEPALVLDLPEEWLAAFKRAYEELAKAAPGLKLLLATYFG--------S-LGENL 247 (360)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEeeCChhhcCCCHHHHHHHHHHHHHHhcCCCCCcEEEEeccc--------c-hHHHH
Confidence 5667888999999999999998732 233444466666666655321 25577664332 1 24556
Q ss_pred HHhhcCCCceEEEECCCChhhHHHHHHHHhhh--cCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHH--cC
Q 019107 235 SIADSCEQVVAVGINCTSPRFIHGLILSVRKV--TSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRD--AG 310 (346)
Q Consensus 235 ~~~~~~~~~~avGvNC~~p~~~~~~l~~l~~~--~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~G 310 (346)
..+.+ ..++++++-++... .-++.+... .++.+++ |. .|+. ..|.+ ++++..+.+.+..+ .-
T Consensus 248 ~~l~~-l~Vd~l~le~~~~~---~~l~~l~~~~~~~k~l~l----Gv-Id~r-n~~~e----d~e~i~~~i~~a~~~v~~ 313 (360)
T cd03312 248 DLLAS-LPVDGLHLDLVRGP---ENLEAVLKAGFADKVLSA----GV-VDGR-NIWRA----DLAASLALLETLAAILGD 313 (360)
T ss_pred HHHHc-CCCCEEEEEecCCc---ccHHHHHhcCCCCCEEEE----EE-EcCC-CCCcC----CHHHHHHHHHHHHHHhcC
Confidence 66655 47899999998542 122222221 1222322 21 2221 24654 35666555554443 23
Q ss_pred CeEEeecCCC
Q 019107 311 ASLFGGCCRT 320 (346)
Q Consensus 311 ~~ivGGCCGt 320 (346)
=-+|.=-||-
T Consensus 314 ~l~lsp~CgL 323 (360)
T cd03312 314 RLVVSPSCSL 323 (360)
T ss_pred cEEEECCCCC
Confidence 3557777774
No 381
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=44.37 E-value=2.6e+02 Score=25.74 Aligned_cols=90 Identities=21% Similarity=0.256 Sum_probs=55.4
Q ss_pred HHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCC-ceEEEECCC
Q 019107 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQ-VVAVGINCT 251 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~-~~avGvNC~ 251 (346)
.++.+.++|+|.+++=-.| .+|....++.+++.+ +..++-++ ..++....-..++...+ +-.+++|=+
T Consensus 96 fi~~~~~aG~~giiipDl~-~ee~~~~~~~~~~~g--~~~i~~i~--------P~T~~~~i~~i~~~~~~~vy~~s~~g~ 164 (242)
T cd04724 96 FLRDAKEAGVDGLIIPDLP-PEEAEEFREAAKEYG--LDLIFLVA--------PTTPDERIKKIAELASGFIYYVSRTGV 164 (242)
T ss_pred HHHHHHHCCCcEEEECCCC-HHHHHHHHHHHHHcC--CcEEEEeC--------CCCCHHHHHHHHhhCCCCEEEEeCCCC
Confidence 4666888999999874444 468888889999877 55554443 23333333333331223 344555553
Q ss_pred -C-----hhhHHHHHHHHhhhcCCcEEE
Q 019107 252 -S-----PRFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 252 -~-----p~~~~~~l~~l~~~~~~pl~v 273 (346)
+ +..+...++.+++..+.|+.+
T Consensus 165 tG~~~~~~~~~~~~i~~lr~~~~~pI~v 192 (242)
T cd04724 165 TGARTELPDDLKELIKRIRKYTDLPIAV 192 (242)
T ss_pred CCCccCCChhHHHHHHHHHhcCCCcEEE
Confidence 1 245667788888877788766
No 382
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=43.92 E-value=2.2e+02 Score=26.06 Aligned_cols=68 Identities=12% Similarity=0.008 Sum_probs=41.8
Q ss_pred HHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcc------cCCCCHHHHHHHhhcCCCceEEEECC
Q 019107 177 LANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINV------VSGDSILECASIADSCEQVVAVGINC 250 (346)
Q Consensus 177 l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l------~~G~~~~~av~~~~~~~~~~avGvNC 250 (346)
+.+.|+|-+++-|... +...+-+++++++ . +++|+..+++.-. ..+.++.++++.+... +..+-++.
T Consensus 91 l~~~G~~~vivGtaa~--~~~~l~~~~~~~g--~-ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~--~~~ii~t~ 163 (228)
T PRK04128 91 AYEIGVENVIIGTKAF--DLEFLEKVTSEFE--G-ITVSLDVKGGRIAVKGWLEESSIKVEDAYEMLKNY--VNRFIYTS 163 (228)
T ss_pred HHHCCCCEEEECchhc--CHHHHHHHHHHcC--C-EEEEEEccCCeEecCCCeEcCCCCHHHHHHHHHHH--hCEEEEEe
Confidence 4457999998865543 3444555666665 3 8889987654222 2455677777777543 44555655
Q ss_pred C
Q 019107 251 T 251 (346)
Q Consensus 251 ~ 251 (346)
.
T Consensus 164 i 164 (228)
T PRK04128 164 I 164 (228)
T ss_pred c
Confidence 4
No 383
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=43.73 E-value=2.9e+02 Score=26.20 Aligned_cols=101 Identities=12% Similarity=0.098 Sum_probs=58.6
Q ss_pred HHHHHHhCCCCEEEEc-cCCCHHH----HHHHHHHHHHhCCCCcEEEEEEEcC-----CCcc---cCCCCHHHHHHHhhc
Q 019107 173 RVLILANSGADLIAFE-TIPNKLE----AKAYAELLEEEGITIPAWFSFNSKD-----GINV---VSGDSILECASIADS 239 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~E-T~~~~~E----~~a~~~a~~~~~~~~pv~is~~~~~-----~~~l---~~G~~~~~av~~~~~ 239 (346)
.++...+.|++.+++- ..-+.+| .+.+++.+++.+ . .|-.-+-. +... .+-++++++.+.+..
T Consensus 89 ~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~g--v--~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~ 164 (282)
T TIGR01859 89 SCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKG--V--SVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKE 164 (282)
T ss_pred HHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcC--C--EEEEeeCCCcCccccccccccccCCHHHHHHHHHH
Confidence 4445567899999875 3333333 334445455554 3 23322211 1100 123588888877754
Q ss_pred CCCceEEEECCC--C------hhhHHHHHHHHhhhcCCcEEEeeCCC
Q 019107 240 CEQVVAVGINCT--S------PRFIHGLILSVRKVTSKPVIIYPNSG 278 (346)
Q Consensus 240 ~~~~~avGvNC~--~------p~~~~~~l~~l~~~~~~pl~vypN~g 278 (346)
.+++.+++.+. + |..-...|+.+++..+.|+++.--+|
T Consensus 165 -tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSG 210 (282)
T TIGR01859 165 -TGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASG 210 (282)
T ss_pred -HCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCC
Confidence 47888887753 2 44446677888887889987765455
No 384
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=43.25 E-value=3.3e+02 Score=26.72 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=32.0
Q ss_pred CChHHHHHHHHHHHHcCCeEEeecCC----CchHHHHHHHHHHcCC
Q 019107 294 VRDEDFVSYIGKWRDAGASLFGGCCR----TTPNTIKAISRVLSNK 335 (346)
Q Consensus 294 ~~~~~~~~~~~~~~~~G~~ivGGCCG----t~P~hI~al~~~~~~~ 335 (346)
.+++.+.+.++.+.+.|+..|. .|- .+|..+..+-+.++..
T Consensus 138 ~~~~~l~~~~~~~~~~g~~~i~-l~DT~G~~~P~~v~~li~~l~~~ 182 (363)
T TIGR02090 138 TDIDFLIKVFKRAEEAGADRIN-IADTVGVLTPQKMEELIKKLKEN 182 (363)
T ss_pred CCHHHHHHHHHHHHhCCCCEEE-EeCCCCccCHHHHHHHHHHHhcc
Confidence 4578889999999999998876 333 4899998888887654
No 385
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=43.03 E-value=3e+02 Score=26.07 Aligned_cols=145 Identities=18% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEcc---CCC-----------HHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCC
Q 019107 163 LETLKEFHRRRVLILANSGADLIAFET---IPN-----------KLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGD 228 (346)
Q Consensus 163 ~~e~~~~~~~~i~~l~~~gvD~i~~ET---~~~-----------~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~ 228 (346)
.+.+.+...+.++.+.++|+|+|.+-. ... ..-.+.+++.+++.+ .|+++.+ .|.
T Consensus 163 l~~i~~~~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g--~~~~lH~---------cG~ 231 (330)
T cd03465 163 LEKCTEFIIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALG--GPVIHHN---------CGD 231 (330)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHcC--CceEEEE---------CCC
Q ss_pred CHHHHHHHhhcCCCceEEEECCCChhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHH
Q 019107 229 SILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRD 308 (346)
Q Consensus 229 ~~~~av~~~~~~~~~~avGvNC~~p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (346)
.- ..+..+.+ .+++++.+--.. .+..+.+.+.......=.+-|. ..+..+ ++++..+.+++.++
T Consensus 232 ~~-~~~~~l~~-~~~d~~~~d~~~--dl~~~~~~~g~~~~i~G~id~~-~~l~~g-----------t~eei~~~v~~~l~ 295 (330)
T cd03465 232 TA-PILELMAD-LGADVFSIDVTV--DLAEAKKKVGDKACLMGNLDPI-DVLLNG-----------SPEEIKEEVKELLE 295 (330)
T ss_pred ch-hHHHHHHH-hCCCeEeecccC--CHHHHHHHhCCceEEEeCcChH-HhhcCC-----------CHHHHHHHHHHHHH
Q ss_pred cCCe-----EEeecCC----CchHHHHHHHHHHcC
Q 019107 309 AGAS-----LFGGCCR----TTPNTIKAISRVLSN 334 (346)
Q Consensus 309 ~G~~-----ivGGCCG----t~P~hI~al~~~~~~ 334 (346)
.+.. |++-.|| |-++.|+++.+++++
T Consensus 296 ~~~~~~~~~il~~gc~i~~~~p~enl~a~v~a~~~ 330 (330)
T cd03465 296 KLLKGGGGYILSSGCEIPPDTPIENIKAMIDAVRE 330 (330)
T ss_pred HHhCCCCCEEEeCCCCCCCCCCHHHHHHHHHHHhC
No 386
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=42.71 E-value=4e+02 Score=27.48 Aligned_cols=147 Identities=13% Similarity=-0.007 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEE----E-c-cC-CCHHHHHHHHHHHH----HhCCCCcEEEEEEEcCCCcccCCCC
Q 019107 161 VSLETLKEFHRRRVLILANSGADLIA----F-E-TI-PNKLEAKAYAELLE----EEGITIPAWFSFNSKDGINVVSGDS 229 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~~gvD~i~----~-E-T~-~~~~E~~a~~~a~~----~~~~~~pv~is~~~~~~~~l~~G~~ 229 (346)
++.+++.+ ++..+...|+|+|= + . .+ |-.+.++++.++++ ++| .+.+..+.+ ++.+
T Consensus 180 Lsp~~~A~----~~y~~~~GGvD~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a~~eTG--~~~~y~~Ni-------Ta~~ 246 (475)
T CHL00040 180 LSAKNYGR----AVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETG--EIKGHYLNA-------TAGT 246 (475)
T ss_pred CCHHHHHH----HHHHHHcCCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhC--Ccceeeecc-------CCCC
Confidence 46666665 44456679999982 1 1 22 22234444445443 356 444434433 3333
Q ss_pred HHHHHHH---hhcCCCceEEEECCC--ChhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHH
Q 019107 230 ILECASI---ADSCEQVVAVGINCT--SPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIG 304 (346)
Q Consensus 230 ~~~av~~---~~~~~~~~avGvNC~--~p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (346)
..+..+. +.. .+..++.+|-. +...+ ..|....+..+.||.+.|+.-..+.. .+..+++. +. +.+
T Consensus 247 ~~em~~ra~~a~e-~G~~~~mv~~~~~G~~al-~~l~~~~~~~~l~IhaHrA~~ga~~r-----~~~~Gis~--~v-l~K 316 (475)
T CHL00040 247 CEEMYKRAVFARE-LGVPIVMHDYLTGGFTAN-TSLAHYCRDNGLLLHIHRAMHAVIDR-----QKNHGIHF--RV-LAK 316 (475)
T ss_pred HHHHHHHHHHHHH-cCCceEEEeccccccchH-HHHHHHhhhcCceEEecccccccccc-----CccCCCcH--HH-HHH
Confidence 4444443 333 46677788775 33332 22332222357899998886322221 11122343 22 555
Q ss_pred HHHHcCCeEE-----eecCCCchHHHHHHHH
Q 019107 305 KWRDAGASLF-----GGCCRTTPNTIKAISR 330 (346)
Q Consensus 305 ~~~~~G~~iv-----GGCCGt~P~hI~al~~ 330 (346)
-|+-.|+..+ .|=-..+.+....+++
T Consensus 317 L~RLaGaD~ih~~t~~gk~~g~~~~~~~~~~ 347 (475)
T CHL00040 317 ALRMSGGDHIHAGTVVGKLEGEREMTLGFVD 347 (475)
T ss_pred HHHHcCCCccccCCcccCCCCCHHHHHHHHH
Confidence 5777787776 4434444453434433
No 387
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=42.57 E-value=2.5e+02 Score=30.76 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=16.1
Q ss_pred HHHHHHhCCCCEEEEccCCCH
Q 019107 173 RVLILANSGADLIAFETIPNK 193 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~~~~ 193 (346)
.+..+.+..||.|.+|+-.+-
T Consensus 652 i~~~i~~l~vD~~~lE~~rs~ 672 (758)
T PRK05222 652 IIDAIAALDADVISIETSRSD 672 (758)
T ss_pred HHHHHHhCCCCEEEEEecCCC
Confidence 566677788999999976443
No 388
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=42.51 E-value=2.7e+02 Score=25.54 Aligned_cols=101 Identities=14% Similarity=0.105 Sum_probs=52.0
Q ss_pred HHHHHHHHhCCCCEEEEc------cC-----CC-----------HHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCC
Q 019107 171 RRRVLILANSGADLIAFE------TI-----PN-----------KLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGD 228 (346)
Q Consensus 171 ~~~i~~l~~~gvD~i~~E------T~-----~~-----------~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~ 228 (346)
.+.++.+.++|||+|=+. -+ ++ +.....+++.+++.. +.|+.+-.... .....|
T Consensus 17 ~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~-~~pv~lm~y~n--~~~~~G- 92 (242)
T cd04724 17 LEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN-TIPIVLMGYYN--PILQYG- 92 (242)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC-CCCEEEEEecC--HHHHhC-
Confidence 346777888999999877 11 11 113334455556543 58865432222 111122
Q ss_pred CHHHHHHHhhcCCCceEEEECCCChhhHHHHHHHHhhhcCCc-EEEeeCC
Q 019107 229 SILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKP-VIIYPNS 277 (346)
Q Consensus 229 ~~~~av~~~~~~~~~~avGvNC~~p~~~~~~l~~l~~~~~~p-l~vypN~ 277 (346)
+...++.+.. .+++++-+.=-+++....+++.++++.-.+ +.+-|+.
T Consensus 93 -~~~fi~~~~~-aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T 140 (242)
T cd04724 93 -LERFLRDAKE-AGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTT 140 (242)
T ss_pred -HHHHHHHHHH-CCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 2445555544 356666554445666666666665543223 2344554
No 389
>PLN02321 2-isopropylmalate synthase
Probab=42.35 E-value=4.6e+02 Score=28.08 Aligned_cols=44 Identities=16% Similarity=0.108 Sum_probs=32.6
Q ss_pred CChHHHHHHHHHHHHcCCeEEeecC---CCchHHHHHHHHHHcCCCC
Q 019107 294 VRDEDFVSYIGKWRDAGASLFGGCC---RTTPNTIKAISRVLSNKSL 337 (346)
Q Consensus 294 ~~~~~~~~~~~~~~~~G~~ivGGCC---Gt~P~hI~al~~~~~~~~~ 337 (346)
.+++...+.++...+.|+..|.=|= ..+|.++..+-+.++...+
T Consensus 237 td~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~ 283 (632)
T PLN02321 237 SDPEFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKANTP 283 (632)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHhcC
Confidence 4577778888888999999876331 2589999888888765433
No 390
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=42.33 E-value=1.8e+02 Score=27.14 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=44.9
Q ss_pred HHHHHHhCCCCEEEEc-cCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECC
Q 019107 173 RVLILANSGADLIAFE-TIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~E-T~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC 250 (346)
|+......|+|++++- +.-+..+++.+++.+++.| +-+++-+. +..++-... . .+++.||+|=
T Consensus 125 qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lG--l~~lvevh-----------~~~E~~~A~-~-~gadiIgin~ 188 (260)
T PRK00278 125 QIYEARAAGADAILLIVAALDDEQLKELLDYAHSLG--LDVLVEVH-----------DEEELERAL-K-LGAPLIGINN 188 (260)
T ss_pred HHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcC--CeEEEEeC-----------CHHHHHHHH-H-cCCCEEEECC
Confidence 6777888999999876 4446678898999988876 66665552 234554433 3 4789999995
No 391
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=42.19 E-value=3.8e+02 Score=27.07 Aligned_cols=147 Identities=14% Similarity=0.094 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEE----E--ccCCCH-HHHHHHHHHH----HHhCCCCcEEEEEEEcCCCcccCCCC
Q 019107 161 VSLETLKEFHRRRVLILANSGADLIA----F--ETIPNK-LEAKAYAELL----EEEGITIPAWFSFNSKDGINVVSGDS 229 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~~gvD~i~----~--ET~~~~-~E~~a~~~a~----~~~~~~~pv~is~~~~~~~~l~~G~~ 229 (346)
++.+++.+ ++..+...|+|+|= + ..+.-. +.++++.+++ +++| .+.+-.+.+. |.
T Consensus 157 lsp~~~a~----~~~~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG--~~~~ya~NiT-------~~- 222 (412)
T TIGR03326 157 LSTEEHAK----VAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAETG--ERKEYLANIT-------AP- 222 (412)
T ss_pred CChHHHHH----HHHHHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHHHHHhC--CcceEEEEec-------CC-
Confidence 46666655 45557779999982 1 223223 3444445554 4466 4444455442 22
Q ss_pred HHHHHH---HhhcCCCceEEEECCC--ChhhHHHHHHHHhh---hcCCcEEEeeCCCCccccccccccccCCCChHHHHH
Q 019107 230 ILECAS---IADSCEQVVAVGINCT--SPRFIHGLILSVRK---VTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVS 301 (346)
Q Consensus 230 ~~~av~---~~~~~~~~~avGvNC~--~p~~~~~~l~~l~~---~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~ 301 (346)
..+..+ .+.. .+..++.||.. +... ++.+++ ..+.|+...|+.-..+.. .+..+++.. .
T Consensus 223 ~~em~~ra~~~~~-~G~~~~mv~~~~~G~~~----l~~l~~~~~~~~l~ih~Hra~~ga~~~-----~~~~Gis~~--v- 289 (412)
T TIGR03326 223 VREMERRAELVAD-LGGQYVMVDVVVCGWSA----LQYIRELTEDLGLAIHAHRAMHAAFTR-----NPKHGISMF--A- 289 (412)
T ss_pred HHHHHHHHHHHHH-hCCCeEEEEeeccchHH----HHHHHHhhccCCeEEEEcCCccccccc-----CCCCcCcHH--H-
Confidence 234443 3333 46778888875 3333 344443 357889888875211111 011123322 1
Q ss_pred HHHHHHHcCCeE--Ee----ecCCCchHHHHHHHHHHcC
Q 019107 302 YIGKWRDAGASL--FG----GCCRTTPNTIKAISRVLSN 334 (346)
Q Consensus 302 ~~~~~~~~G~~i--vG----GCCGt~P~hI~al~~~~~~ 334 (346)
+.+-|+-+|+.. +| |==..+++...++++.+..
T Consensus 290 l~kl~RLaGaD~~~~~t~~~Gk~~~~~~~~~~~~~~~~~ 328 (412)
T TIGR03326 290 LAKLYRLIGVDQLHTGTAGVGKLEGGKEDTKQINDFLRQ 328 (412)
T ss_pred HHHHHHHcCCCeeeeCCCccCCCCCCHHHHHHHHHHHhC
Confidence 444455556443 33 2233456666777776653
No 392
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=42.15 E-value=2.3e+02 Score=26.38 Aligned_cols=140 Identities=16% Similarity=0.147 Sum_probs=80.3
Q ss_pred CCCCEEEE--ccCCCHHH--HHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCC---
Q 019107 180 SGADLIAF--ETIPNKLE--AKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTS--- 252 (346)
Q Consensus 180 ~gvD~i~~--ET~~~~~E--~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~--- 252 (346)
.-+|++=| -|..-..+ ++..++.+++.+ +++..-=++-+- .+.. ..+.+.++.+++ .+.++|=|+=..
T Consensus 23 ~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~--V~v~~GGtl~E~-~~~q-~~~~~Yl~~~k~-lGf~~IEiS~G~~~i 97 (237)
T TIGR03849 23 DYITFVKFGWGTSALIDRDIVKEKIEMYKDYG--IKVYPGGTLFEI-AHSK-GKFDEYLNECDE-LGFEAVEISDGSMEI 97 (237)
T ss_pred hheeeEEecCceEeeccHHHHHHHHHHHHHcC--CeEeCCccHHHH-HHHh-hhHHHHHHHHHH-cCCCEEEEcCCccCC
Confidence 46788743 34443333 777888888876 555411000000 0011 233444445544 477888787752
Q ss_pred -hhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeEE---e-------ecCC--
Q 019107 253 -PRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLF---G-------GCCR-- 319 (346)
Q Consensus 253 -p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iv---G-------GCCG-- 319 (346)
.+....+++.+++ .-+-+.|--|.... .....+++++|.+.+++++++||..| + |+|.
T Consensus 98 ~~~~~~rlI~~~~~---~g~~v~~EvG~K~~------~~~~~~~~~~~i~~~~~~LeAGA~~ViiEarEsg~~~Gi~~~~ 168 (237)
T TIGR03849 98 SLEERCNLIERAKD---NGFMVLSEVGKKSP------EKDSELTPDDRIKLINKDLEAGADYVIIEGRESGKNIGLFDEK 168 (237)
T ss_pred CHHHHHHHHHHHHh---CCCeEeccccccCC------cccccCCHHHHHHHHHHHHHCCCcEEEEeehhcCCCcceeCCC
Confidence 3556677777654 34556665553211 11123678999999999999998765 2 6775
Q ss_pred --CchHHHHHHHHHHc
Q 019107 320 --TTPNTIKAISRVLS 333 (346)
Q Consensus 320 --t~P~hI~al~~~~~ 333 (346)
...+-+.+|.+.+.
T Consensus 169 g~~r~d~v~~i~~~l~ 184 (237)
T TIGR03849 169 GNVKEDELDVLAENVD 184 (237)
T ss_pred CCCchHHHHHHHhhCC
Confidence 45666666666544
No 393
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=42.10 E-value=4.9e+02 Score=28.33 Aligned_cols=111 Identities=11% Similarity=0.088 Sum_probs=64.5
Q ss_pred CCCHHH---HHHHHHHHHHHHHhCCCCEEEEccC------------C---------CH----HHHHHHHHHHHHh-CCCC
Q 019107 160 AVSLET---LKEFHRRRVLILANSGADLIAFETI------------P---------NK----LEAKAYAELLEEE-GITI 210 (346)
Q Consensus 160 ~~~~~e---~~~~~~~~i~~l~~~gvD~i~~ET~------------~---------~~----~E~~a~~~a~~~~-~~~~ 210 (346)
++|.+| +.+.|.+-++...++|.|.|=+-.- + ++ .=+..+++++++. +.+.
T Consensus 540 ~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~ 619 (765)
T PRK08255 540 EMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEK 619 (765)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCC
Confidence 356555 5556777777788899999943211 1 22 2233455556653 3356
Q ss_pred cEEEEEEEcCCCcccCCCCHHHHHHHh---hcCCCceEEEECCC--Ch--------hhHHHHHHHHhhhcCCcEEE
Q 019107 211 PAWFSFNSKDGINVVSGDSILECASIA---DSCEQVVAVGINCT--SP--------RFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 211 pv~is~~~~~~~~l~~G~~~~~av~~~---~~~~~~~avGvNC~--~p--------~~~~~~l~~l~~~~~~pl~v 273 (346)
|+.+-++..+ ....|.++++.+..+ ++ .+++.|-|-.. .. .....+.+.+++..+.|+++
T Consensus 620 ~v~~ri~~~~--~~~~g~~~~~~~~~~~~l~~-~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~ 692 (765)
T PRK08255 620 PMSVRISAHD--WVEGGNTPDDAVEIARAFKA-AGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIA 692 (765)
T ss_pred eeEEEEcccc--ccCCCCCHHHHHHHHHHHHh-cCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEE
Confidence 7777776533 234577777766544 33 46777766532 11 12244556777777888766
No 394
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=42.08 E-value=2.7e+02 Score=25.31 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEc-cCCCHHHHHHHHHHHHHh
Q 019107 162 SLETLKEFHRRRVLILANSGADLIAFE-TIPNKLEAKAYAELLEEE 206 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~~~gvD~i~~E-T~~~~~E~~a~~~a~~~~ 206 (346)
+.+++.+ .++.+.+.|+|+| | |+.+. +...+++.+++.
T Consensus 25 ~~~~a~~----i~~al~~~Gi~~i--Eitl~~~-~~~~~I~~l~~~ 63 (212)
T PRK05718 25 KLEDAVP----LAKALVAGGLPVL--EVTLRTP-AALEAIRLIAKE 63 (212)
T ss_pred CHHHHHH----HHHHHHHcCCCEE--EEecCCc-cHHHHHHHHHHH
Confidence 4555544 6777888888866 5 44443 555555556553
No 395
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=41.89 E-value=1.5e+02 Score=26.83 Aligned_cols=65 Identities=11% Similarity=0.002 Sum_probs=43.8
Q ss_pred EEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHH---HhhcCCCceEEEECCC
Q 019107 186 AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECAS---IADSCEQVVAVGINCT 251 (346)
Q Consensus 186 ~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~---~~~~~~~~~avGvNC~ 251 (346)
+..|+.+.+.++.+-+++++.+...+||+.+.+.. +.-+.|-+..++.+ .+....++...|+-|.
T Consensus 95 ~~~~I~s~~~~~~l~~~a~~~g~~~~v~l~id~~~-Gm~R~Gi~~~~~~~~~~~i~~~~~l~l~Gl~tH 162 (224)
T cd06824 95 WVHSVDRLKIAKRLNDQRPAGLPPLNVCIQVNISG-EDSKSGVAPEDAAELAEAISQLPNLRLRGLMAI 162 (224)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCCcEEEEEEcCC-CCCCCCCCHHHHHHHHHHHhcCCCCcEEEEEEe
Confidence 44789999999988888877664567788887643 22356776655444 3344456777888775
No 396
>PLN02826 dihydroorotate dehydrogenase
Probab=41.81 E-value=3.8e+02 Score=26.98 Aligned_cols=144 Identities=20% Similarity=0.164 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEc-cCC---------CHHHHHHHHHHHHHh--------CCCCcEEEEEEEcCCCccc
Q 019107 164 ETLKEFHRRRVLILANSGADLIAFE-TIP---------NKLEAKAYAELLEEE--------GITIPAWFSFNSKDGINVV 225 (346)
Q Consensus 164 ~e~~~~~~~~i~~l~~~gvD~i~~E-T~~---------~~~E~~a~~~a~~~~--------~~~~pv~is~~~~~~~~l~ 225 (346)
++..+-|...++.+. ..+|+|.+. +-| +.+.+..+++.+++. ...+|+++-++.+-
T Consensus 200 ~~~~~Dy~~~~~~~~-~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl----- 273 (409)
T PLN02826 200 EDAAADYVQGVRALS-QYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDL----- 273 (409)
T ss_pred cccHHHHHHHHHHHh-hhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCC-----
Confidence 444556777777776 469999765 112 233444555544421 12589999886421
Q ss_pred CCCCHHHHHHHhhcCCCceE-EEECCCC--hh---------------------hHHHHHHHHhhhc--CCcEEEeeCCCC
Q 019107 226 SGDSILECASIADSCEQVVA-VGINCTS--PR---------------------FIHGLILSVRKVT--SKPVIIYPNSGE 279 (346)
Q Consensus 226 ~G~~~~~av~~~~~~~~~~a-vGvNC~~--p~---------------------~~~~~l~~l~~~~--~~pl~vypN~g~ 279 (346)
+-+.+.++++.+.. .++++ +-+|.+- +. .....+..+.+.. +.|++.- .|
T Consensus 274 ~~~di~~ia~~a~~-~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgv--GG- 349 (409)
T PLN02826 274 SKEDLEDIAAVALA-LGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGC--GG- 349 (409)
T ss_pred CHHHHHHHHHHHHH-cCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEE--CC-
Confidence 12246677776654 46776 5667541 11 1122233333332 2233221 11
Q ss_pred ccccccccccccCCCChHHHHHHHHHHHHcCCeEEeecCCC---chHHHHHHHHHHcC
Q 019107 280 TYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRT---TPNTIKAISRVLSN 334 (346)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivGGCCGt---~P~hI~al~~~~~~ 334 (346)
..+.++.. +.+.+||+.|.-|.+. +|..++.|.+.+..
T Consensus 350 -------------I~sg~Da~----e~i~AGAs~VQv~Ta~~~~Gp~~i~~I~~eL~~ 390 (409)
T PLN02826 350 -------------VSSGEDAY----KKIRAGASLVQLYTAFAYEGPALIPRIKAELAA 390 (409)
T ss_pred -------------CCCHHHHH----HHHHhCCCeeeecHHHHhcCHHHHHHHHHHHHH
Confidence 12333333 3567899998877662 68888887777653
No 397
>PLN02433 uroporphyrinogen decarboxylase
Probab=41.78 E-value=3.4e+02 Score=26.33 Aligned_cols=41 Identities=7% Similarity=0.004 Sum_probs=31.7
Q ss_pred ChHHHHHHHHHHHHcCCe---EEeecCC----CchHHHHHHHHHHcCC
Q 019107 295 RDEDFVSYIGKWRDAGAS---LFGGCCR----TTPNTIKAISRVLSNK 335 (346)
Q Consensus 295 ~~~~~~~~~~~~~~~G~~---ivGGCCG----t~P~hI~al~~~~~~~ 335 (346)
++++..+.+++.++.+.. |+.-.|| |.+++|+++.++++..
T Consensus 290 t~e~i~~~v~~~i~~~~~~g~Il~~Gc~i~~~tp~eNi~a~v~av~~~ 337 (345)
T PLN02433 290 SKEAIEKEVRDVVKKAGPQGHILNLGHGVLVGTPEENVAHFFDVAREL 337 (345)
T ss_pred CHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCCHHHHHHHHHHHHHh
Confidence 578899999998875433 6665565 6789999999998864
No 398
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=41.73 E-value=2.6e+02 Score=24.96 Aligned_cols=62 Identities=19% Similarity=0.203 Sum_probs=40.1
Q ss_pred HHHHHHhCCCCEEEEcc-CCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEEC
Q 019107 173 RVLILANSGADLIAFET-IPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGIN 249 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET-~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvN 249 (346)
+++.+.+.|+|.+++-+ .....+++.+++..+..+ +.+++.+. +..++.+.. + .+++.+|+|
T Consensus 86 ~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g--~~~~v~v~-----------~~~e~~~~~-~-~g~~~i~~t 148 (217)
T cd00331 86 QIYEARAAGADAVLLIVAALDDEQLKELYELARELG--MEVLVEVH-----------DEEELERAL-A-LGAKIIGIN 148 (217)
T ss_pred HHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcC--CeEEEEEC-----------CHHHHHHHH-H-cCCCEEEEe
Confidence 57778889999998543 233467777887777765 55554442 334444433 3 367888888
No 399
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=41.59 E-value=21 Score=34.59 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=20.5
Q ss_pred CCChHHHHHHHHHHHHhhcceeecc
Q 019107 51 VSSPHLVRKVHLDYLDAGANIIITA 75 (346)
Q Consensus 51 l~~Pe~V~~iH~~yl~AGA~iI~Tn 75 (346)
++....|.+.+..|-+||||+|+|.
T Consensus 291 ~d~~~~~~Esl~~~kRAGAd~IiTY 315 (324)
T PF00490_consen 291 IDEKRVVLESLLSIKRAGADIIITY 315 (324)
T ss_dssp S-HHHHHHHHHHHHHHHT-SEEEET
T ss_pred cchhhHHHHHHHHHHHcCCCEEEee
Confidence 4666799999999999999999984
No 400
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=41.56 E-value=1.5e+02 Score=27.79 Aligned_cols=58 Identities=10% Similarity=0.044 Sum_probs=46.0
Q ss_pred HHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhc
Q 019107 170 HRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS 239 (346)
Q Consensus 170 ~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~ 239 (346)
|.+.++.+...+.|.|++.-+-+.+++.++++++.. | ..+|.|+ +..+..+++..+..
T Consensus 138 ~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa~t-G--h~v~tTl---------Ha~~~~~ai~Rl~~ 195 (264)
T cd01129 138 FARGLRAILRQDPDIIMVGEIRDAETAEIAVQAALT-G--HLVLSTL---------HTNDAPGAITRLLD 195 (264)
T ss_pred HHHHHHHHhccCCCEEEeccCCCHHHHHHHHHHHHc-C--CcEEEEe---------ccCCHHHHHHHHHH
Confidence 556677777889999999999999999999997773 4 6688777 66677788887754
No 401
>KOG2794 consensus Delta-aminolevulinic acid dehydratase [Coenzyme transport and metabolism]
Probab=41.49 E-value=20 Score=33.91 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=20.6
Q ss_pred CChHHHHHHHHHHHHhhcceeecc
Q 019107 52 SSPHLVRKVHLDYLDAGANIIITA 75 (346)
Q Consensus 52 ~~Pe~V~~iH~~yl~AGA~iI~Tn 75 (346)
+-...|-+-|.-|.+||||||.|.
T Consensus 304 Dlk~~vmEsm~~frRAGAdiIlTY 327 (340)
T KOG2794|consen 304 DLKKVVMESMLGFRRAGADIILTY 327 (340)
T ss_pred cHHHHHHHHHHHHHhcCCcEEEee
Confidence 445678899999999999999974
No 402
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=41.32 E-value=2.9e+02 Score=25.55 Aligned_cols=81 Identities=15% Similarity=0.096 Sum_probs=51.4
Q ss_pred CceEEEECCC--ChhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeEEeecC-
Q 019107 242 QVVAVGINCT--SPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCC- 318 (346)
Q Consensus 242 ~~~avGvNC~--~p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivGGCC- 318 (346)
+++.+.+-+. ..+.+..+++..++. ...+.+++-.. ...+|+.+.+.+++..+.|+..|. .|
T Consensus 98 g~~~iri~~~~s~~~~~~~~i~~ak~~-G~~v~~~~~~~-------------~~~~~~~~~~~~~~~~~~G~d~i~-l~D 162 (263)
T cd07943 98 GVDVVRVATHCTEADVSEQHIGAARKL-GMDVVGFLMMS-------------HMASPEELAEQAKLMESYGADCVY-VTD 162 (263)
T ss_pred CCCEEEEEechhhHHHHHHHHHHHHHC-CCeEEEEEEec-------------cCCCHHHHHHHHHHHHHcCCCEEE-EcC
Confidence 6777666443 345556666665543 33333333110 114578899999999999999885 44
Q ss_pred ---CCchHHHHHHHHHHcCCCC
Q 019107 319 ---RTTPNTIKAISRVLSNKSL 337 (346)
Q Consensus 319 ---Gt~P~hI~al~~~~~~~~~ 337 (346)
.-+|..++.+-+.++...+
T Consensus 163 T~G~~~P~~v~~lv~~l~~~~~ 184 (263)
T cd07943 163 SAGAMLPDDVRERVRALREALD 184 (263)
T ss_pred CCCCcCHHHHHHHHHHHHHhCC
Confidence 3489999998888876533
No 403
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=41.20 E-value=2.9e+02 Score=25.39 Aligned_cols=94 Identities=16% Similarity=0.155 Sum_probs=51.3
Q ss_pred HHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCC---C----cc-----cCCCCHHHHHHHhhcCCCce
Q 019107 177 LANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDG---I----NV-----VSGDSILECASIADSCEQVV 244 (346)
Q Consensus 177 l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~---~----~l-----~~G~~~~~av~~~~~~~~~~ 244 (346)
+.+.|+|.+++-|. .+.....+.+..+..+ +-.+++++.+.++ + .+ ....++.+.+..+.. .+++
T Consensus 92 ~l~~Ga~~Viigt~-~l~~p~~~~ei~~~~g-~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~g~~ 168 (253)
T PRK02083 92 LLRAGADKVSINSA-AVANPELISEAADRFG-SQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEE-LGAG 168 (253)
T ss_pred HHHcCCCEEEEChh-HhhCcHHHHHHHHHcC-CCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHH-cCCC
Confidence 34468999988753 2222233334444444 3457778876542 1 11 234466677776655 4677
Q ss_pred EEEECC----C-ChhhHHHHHHHHhhhcCCcEEE
Q 019107 245 AVGINC----T-SPRFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 245 avGvNC----~-~p~~~~~~l~~l~~~~~~pl~v 273 (346)
.+-+.= . ....-..+++.+.+..+.|+++
T Consensus 169 ~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia 202 (253)
T PRK02083 169 EILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIA 202 (253)
T ss_pred EEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEE
Confidence 665522 2 1111246777777777788655
No 404
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=41.19 E-value=98 Score=28.95 Aligned_cols=102 Identities=17% Similarity=0.248 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhhcceeeccccccCHHhHHhCCCC----HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCC
Q 019107 55 HLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFS----TEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRIS 130 (346)
Q Consensus 55 e~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~~g~~----~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~ 130 (346)
+...++|..-.+-|..|= +=++.+++ ++ +.|-. .+++.+++.+|++||++. .
T Consensus 54 ~er~~l~~ai~etgv~ip-SmClSaHR-Rf-PfGS~D~~~r~~aleiM~KaI~LA~dL---------------------G 109 (287)
T COG3623 54 EERLALVNAIQETGVRIP-SMCLSAHR-RF-PFGSKDEATRQQALEIMEKAIQLAQDL---------------------G 109 (287)
T ss_pred HHHHHHHHHHHHhCCCcc-chhhhhhc-cC-CCCCCCHHHHHHHHHHHHHHHHHHHHh---------------------C
Confidence 445677877777775432 11222221 11 11221 256778999999999876 2
Q ss_pred CCCcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCCCH
Q 019107 131 SRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNK 193 (346)
Q Consensus 131 ~~~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~ 193 (346)
-+.+-+|| |-.+.++. ++.+.....+.-+..++....+.| ++++|+|-++
T Consensus 110 IRtIQLAG----YDVYYE~~--------d~eT~~rFi~g~~~a~~lA~~aqV-~lAvEiMDtp 159 (287)
T COG3623 110 IRTIQLAG----YDVYYEEA--------DEETRQRFIEGLKWAVELAARAQV-MLAVEIMDTP 159 (287)
T ss_pred ceeEeecc----ceeeeccC--------CHHHHHHHHHHHHHHHHHHHhhcc-EEEeeecccH
Confidence 24677777 54433211 112333344444444554445555 6788988654
No 405
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=41.13 E-value=3.2e+02 Score=25.86 Aligned_cols=145 Identities=15% Similarity=0.089 Sum_probs=78.5
Q ss_pred ChHHHHHHHHHHHHhhcceeecc-ccccCHHhHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 019107 53 SPHLVRKVHLDYLDAGANIIITA-SYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISS 131 (346)
Q Consensus 53 ~Pe~V~~iH~~yl~AGA~iI~Tn-Ty~as~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~ 131 (346)
|.+.++++-+.+++.|++-|..+ |.+-. . -++.++-+++.+.+++.+ .+
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v~GstGE~-~-----~Lt~eEr~~v~~~~~~~~------------------------~g 73 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFAAGGTGEF-F-----SLTPAEYEQVVEIAVSTA------------------------KG 73 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCcCc-c-----cCCHHHHHHHHHHHHHHh------------------------CC
Confidence 56788999999999999977643 43321 1 234455556655555432 12
Q ss_pred CCcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCC-----CHHHHHHHHHHHHHh
Q 019107 132 RPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIP-----NKLEAKAYAELLEEE 206 (346)
Q Consensus 132 ~~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~-----~~~E~~a~~~a~~~~ 206 (346)
+-.+|+| +|. . .++.. ++++...+.|+|.+++= -| +-+++....+.+.+.
T Consensus 74 ~~pvi~g-v~~-~------------------t~~ai----~~a~~a~~~Gadav~~~-pP~y~~~s~~~i~~~f~~v~~a 128 (296)
T TIGR03249 74 KVPVYTG-VGG-N------------------TSDAI----EIARLAEKAGADGYLLL-PPYLINGEQEGLYAHVEAVCES 128 (296)
T ss_pred CCcEEEe-cCc-c------------------HHHHH----HHHHHHHHhCCCEEEEC-CCCCCCCCHHHHHHHHHHHHhc
Confidence 3345666 342 1 12333 35667778999999873 33 445655555555543
Q ss_pred CCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCC--ChhhHHHHHH
Q 019107 207 GITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT--SPRFIHGLIL 261 (346)
Q Consensus 207 ~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~--~p~~~~~~l~ 261 (346)
. ++|+++= +..+ ..-+++...+.++... -.+||--+ ....+..+++
T Consensus 129 ~-~~pvilY---n~~g---~~l~~~~~~~La~~~~--nvvgiKds~~d~~~~~~~~~ 176 (296)
T TIGR03249 129 T-DLGVIVY---QRDN---AVLNADTLERLADRCP--NLVGFKDGIGDMEQMIEITQ 176 (296)
T ss_pred c-CCCEEEE---eCCC---CCCCHHHHHHHHhhCC--CEEEEEeCCCCHHHHHHHHH
Confidence 3 5898862 1111 1224443333333233 45666554 3455555543
No 406
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=40.96 E-value=38 Score=29.25 Aligned_cols=73 Identities=19% Similarity=0.280 Sum_probs=47.4
Q ss_pred cCCCCHHHHHHHhhcCCCceEEEECCC-C----hhhHHHHHHHHhhhc----CCcEEEeeCCCCccccccccccccCCCC
Q 019107 225 VSGDSILECASIADSCEQVVAVGINCT-S----PRFIHGLILSVRKVT----SKPVIIYPNSGETYNAELKKWVESTGVR 295 (346)
Q Consensus 225 ~~G~~~~~av~~~~~~~~~~avGvNC~-~----p~~~~~~l~~l~~~~----~~pl~vypN~g~~~~~~~~~~~~~~~~~ 295 (346)
-|++.+.+++..+.+.+.+.+|.||+. + .+....+++.+++.. .+|++++- .|.- .+
T Consensus 56 id~~~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v-~GT~-------------~d 121 (153)
T PF00549_consen 56 IDPSTRNEALEIEAADPEVKVILVDIVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARV-CGTN-------------AD 121 (153)
T ss_dssp T-SSHHHHHHHHHHTSTTESEEEEEEESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEE-ESTT-------------CH
T ss_pred cCHHHHHHHHHHHhcCCCccEEEEEeccccCchHHHHHHHHHHHHhccccCCCCcEEEEe-eeec-------------CC
Confidence 468888999998766678899999995 2 456677777776553 57888764 2211 12
Q ss_pred hHHHHHHHHHHHHcCC
Q 019107 296 DEDFVSYIGKWRDAGA 311 (346)
Q Consensus 296 ~~~~~~~~~~~~~~G~ 311 (346)
|..+.+..+.+.+.|+
T Consensus 122 pq~~~~~~~~L~~~G~ 137 (153)
T PF00549_consen 122 PQGRMGQAGALEDAGV 137 (153)
T ss_dssp TTSCHHHHHHHHCTTC
T ss_pred CCCcHHHHHHHHhCCC
Confidence 3444456666667776
No 407
>TIGR03586 PseI pseudaminic acid synthase.
Probab=40.94 E-value=1.3e+02 Score=29.29 Aligned_cols=97 Identities=15% Similarity=0.134 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhCCCCEEEEccCCCHHHHHHH--------------------HHHHHHhCCCCcEEEEEEEcCCCcccCC
Q 019107 168 EFHRRRVLILANSGADLIAFETIPNKLEAKAY--------------------AELLEEEGITIPAWFSFNSKDGINVVSG 227 (346)
Q Consensus 168 ~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~--------------------~~a~~~~~~~~pv~is~~~~~~~~l~~G 227 (346)
++|++..+...+.|++++. |..+...+..+ ++.+.++ ++||++|--. .+=
T Consensus 77 e~~~~L~~~~~~~Gi~~~s--tpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~--gkPvilstG~------~t~ 146 (327)
T TIGR03586 77 EWHKELFERAKELGLTIFS--SPFDETAVDFLESLDVPAYKIASFEITDLPLIRYVAKT--GKPIIMSTGI------ATL 146 (327)
T ss_pred HHHHHHHHHHHHhCCcEEE--ccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHhc--CCcEEEECCC------CCH
Confidence 4566666666666766663 33344333322 3334444 4999987621 122
Q ss_pred CCHHHHHHHhhcCCCceEEEECCCC--h----hhHHHHHHHHhhhcCCcEEEe
Q 019107 228 DSILECASIADSCEQVVAVGINCTS--P----RFIHGLILSVRKVTSKPVIIY 274 (346)
Q Consensus 228 ~~~~~av~~~~~~~~~~avGvNC~~--p----~~~~~~l~~l~~~~~~pl~vy 274 (346)
+.+..|++.+........+.+-|++ | +.=+..+..+++....|++..
T Consensus 147 ~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~~pVG~S 199 (327)
T TIGR03586 147 EEIQEAVEACREAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAERFNVPVGLS 199 (327)
T ss_pred HHHHHHHHHHHHCCCCcEEEEecCCCCCCCcccCCHHHHHHHHHHhCCCEEee
Confidence 3455667766543233577888973 2 223556677777677887664
No 408
>PTZ00344 pyridoxal kinase; Provisional
Probab=40.70 E-value=2.2e+02 Score=26.85 Aligned_cols=78 Identities=8% Similarity=-0.062 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHHHHHHH-HHhCCCCEEEEccCCCHHHHHHHHHHHHHh---CCCCcEEEEEEEcCCCcccCCCCHHHHH
Q 019107 159 DAVSLETLKEFHRRRVLI-LANSGADLIAFETIPNKLEAKAYAELLEEE---GITIPAWFSFNSKDGINVVSGDSILECA 234 (346)
Q Consensus 159 ~~~~~~e~~~~~~~~i~~-l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~---~~~~pv~is~~~~~~~~l~~G~~~~~av 234 (346)
..++.+++.++.+. ++. .....+|++..-.+|+.+-+..+++.+++. +.+.++++--...+.+++..+..+.+++
T Consensus 55 ~~i~~~~~~~~l~~-l~~~~~~~~~~~v~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~ 133 (296)
T PTZ00344 55 HRLDLNELITLMDG-LRANNLLSDYTYVLTGYINSADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDAY 133 (296)
T ss_pred eeCCHHHHHHHHHH-HHhcCCcccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHHH
Confidence 34666665554332 222 123468999999999988888888887643 2112343321233455555666666666
Q ss_pred HHh
Q 019107 235 SIA 237 (346)
Q Consensus 235 ~~~ 237 (346)
..+
T Consensus 134 ~~l 136 (296)
T PTZ00344 134 REL 136 (296)
T ss_pred HHH
Confidence 543
No 409
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=40.69 E-value=2e+02 Score=23.34 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=24.3
Q ss_pred CCHHHHHHHhhcCCCceEEEECCCC---hhhHHHHHHHHhhh
Q 019107 228 DSILECASIADSCEQVVAVGINCTS---PRFIHGLILSVRKV 266 (346)
Q Consensus 228 ~~~~~av~~~~~~~~~~avGvNC~~---p~~~~~~l~~l~~~ 266 (346)
.+.+++++.+.+ .+++.|++.|.. .+.+..+++.+++.
T Consensus 37 vp~e~~~~~a~~-~~~d~V~iS~~~~~~~~~~~~~~~~L~~~ 77 (122)
T cd02071 37 QTPEEIVEAAIQ-EDVDVIGLSSLSGGHMTLFPEVIELLREL 77 (122)
T ss_pred CCHHHHHHHHHH-cCCCEEEEcccchhhHHHHHHHHHHHHhc
Confidence 466677776655 467888887763 34556666666654
No 410
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=40.67 E-value=60 Score=30.81 Aligned_cols=46 Identities=24% Similarity=0.353 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhCCCCEEEEc--cCCCHHHHHHHHHHHHHhCCCCcEEEEEE
Q 019107 169 FHRRRVLILANSGADLIAFE--TIPNKLEAKAYAELLEEEGITIPAWFSFN 217 (346)
Q Consensus 169 ~~~~~i~~l~~~gvD~i~~E--T~~~~~E~~a~~~a~~~~~~~~pv~is~~ 217 (346)
.|.+++...+++|..+|+ | --.+++|++.+++++++.+ +++.|.|.
T Consensus 79 ~H~e~~~~AL~aGkhVl~-EKPla~t~~ea~~l~~~a~~~~--~~l~v~~~ 126 (342)
T COG0673 79 LHAELALAALEAGKHVLC-EKPLALTLEEAEELVELARKAG--VKLMVGFN 126 (342)
T ss_pred hhHHHHHHHHhcCCEEEE-cCCCCCCHHHHHHHHHHHHHcC--Cceeeehh
Confidence 577788888888886554 7 3458888888888888764 55555554
No 411
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=40.61 E-value=2.9e+02 Score=27.63 Aligned_cols=61 Identities=15% Similarity=0.196 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHh-CCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCCh--hhHHHHHHH
Q 019107 191 PNKLEAKAYAELLEEE-GITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSP--RFIHGLILS 262 (346)
Q Consensus 191 ~~~~E~~a~~~a~~~~-~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~p--~~~~~~l~~ 262 (346)
-|.+.+..+++-+.+. +.+++--+-+.+ |+.+-+..-+.+.+ .-|-+||++| -+-+++++.
T Consensus 41 Rn~~KL~~vL~~~~~k~~~~ls~~~i~i~-------D~~n~~Sl~emak~----~~vivN~vGPyR~hGE~VVka 104 (423)
T KOG2733|consen 41 RNEKKLQEVLEKVGEKTGTDLSSSVILIA-------DSANEASLDEMAKQ----ARVIVNCVGPYRFHGEPVVKA 104 (423)
T ss_pred CCHHHHHHHHHHHhhccCCCcccceEEEe-------cCCCHHHHHHHHhh----hEEEEeccccceecCcHHHHH
Confidence 4677777777766553 333333332323 34333333333333 2455999988 344555554
No 412
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=40.45 E-value=3.2e+02 Score=25.66 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=21.2
Q ss_pred CCChHHHHHHHHHHHHhhcceeeccccccCH
Q 019107 51 VSSPHLVRKVHLDYLDAGANIIITASYQATI 81 (346)
Q Consensus 51 l~~Pe~V~~iH~~yl~AGA~iI~TnTy~as~ 81 (346)
+.+++.+++. .-.+|++|++.+.-+.+.
T Consensus 19 y~s~~~~~~a---i~aSg~~ivTva~rR~~~ 46 (248)
T cd04728 19 YPSPAIMKEA---IEASGAEIVTVALRRVNI 46 (248)
T ss_pred CCCHHHHHHH---HHHhCCCEEEEEEEeccc
Confidence 4677777665 557999999998877653
No 413
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=40.23 E-value=1.3e+02 Score=30.12 Aligned_cols=24 Identities=17% Similarity=0.447 Sum_probs=18.8
Q ss_pred CCeEEeecCCCchHHHHHHHHHHcC
Q 019107 310 GASLFGGCCRTTPNTIKAISRVLSN 334 (346)
Q Consensus 310 G~~ivGGCCGt~P~hI~al~~~~~~ 334 (346)
.++|+|||. .+|.++++|++.+..
T Consensus 159 ~VNiig~~~-~~~~D~~eik~lL~~ 182 (417)
T cd01966 159 QVNLLPGAH-LTPGDVEELKDIIEA 182 (417)
T ss_pred cEEEECCCC-CCHHHHHHHHHHHHH
Confidence 389999884 368899999888764
No 414
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=40.20 E-value=3.4e+02 Score=26.02 Aligned_cols=91 Identities=8% Similarity=-0.070 Sum_probs=59.7
Q ss_pred HHHHHHhCCCCEEEEccCC--------------CHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhh
Q 019107 173 RVLILANSGADLIAFETIP--------------NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~~--------------~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~ 238 (346)
-++.+.++||-.|.+|-.. +.+|...=++++++...+.+++|.-..+. . .+..++++++...
T Consensus 97 ~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa--~--~~~g~deaI~Ra~ 172 (294)
T TIGR02319 97 ATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDA--R--ESFGLDEAIRRSR 172 (294)
T ss_pred HHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecc--c--ccCCHHHHHHHHH
Confidence 4778889999999999742 45566666666666433456776665443 2 3456889988764
Q ss_pred c--CCCceEEEECCC-ChhhHHHHHHHHhhhcCCcE
Q 019107 239 S--CEQVVAVGINCT-SPRFIHGLILSVRKVTSKPV 271 (346)
Q Consensus 239 ~--~~~~~avGvNC~-~p~~~~~~l~~l~~~~~~pl 271 (346)
. ..|+++|=+-+. .++.+..+.+. .+.|+
T Consensus 173 aY~eAGAD~ifi~~~~~~~ei~~~~~~----~~~P~ 204 (294)
T TIGR02319 173 EYVAAGADCIFLEAMLDVEEMKRVRDE----IDAPL 204 (294)
T ss_pred HHHHhCCCEEEecCCCCHHHHHHHHHh----cCCCe
Confidence 3 257888888664 46666555554 35675
No 415
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=40.15 E-value=3.4e+02 Score=25.91 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=31.3
Q ss_pred ChHHHHHHHHHHHHcCCeEEeecCC----CchHHHHHHHHHHc
Q 019107 295 RDEDFVSYIGKWRDAGASLFGGCCR----TTPNTIKAISRVLS 333 (346)
Q Consensus 295 ~~~~~~~~~~~~~~~G~~ivGGCCG----t~P~hI~al~~~~~ 333 (346)
++++..+.+++.++.|.-|++--|| |.++.++++.++++
T Consensus 283 t~e~i~~~~~~~l~~g~~Il~~Gc~i~~~tp~env~a~v~a~~ 325 (326)
T cd03307 283 TPEDVKAEARKCLEDGVDILAPGCGIAPRTPLANLKAMVEARK 325 (326)
T ss_pred CHHHHHHHHHHHHHccCCEecCcCCCCCCCCHHHHHHHHHHHh
Confidence 5788999999999887667766666 67888999888765
No 416
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=40.15 E-value=3.5e+02 Score=27.10 Aligned_cols=150 Identities=19% Similarity=0.214 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEE-----EEc-cCCCH-HHHHHHHHHH----HHhCCCCcEEEEEEEcCCCcccCCCC
Q 019107 161 VSLETLKEFHRRRVLILANSGADLI-----AFE-TIPNK-LEAKAYAELL----EEEGITIPAWFSFNSKDGINVVSGDS 229 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~~gvD~i-----~~E-T~~~~-~E~~a~~~a~----~~~~~~~pv~is~~~~~~~~l~~G~~ 229 (346)
++.+++.+ ++..+...|+|+| +.. .+.-. +.++++.+++ +++| .+.+-.+.+. |.
T Consensus 137 lsp~~~a~----~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~a~~~a~~~a~~eTG--~~~~ya~NiT-------~~- 202 (391)
T cd08209 137 LDLDDLAE----QLREQALGGVDLIKDDEILFDNPLAPALERIRACRPVLQEVYEQTG--RRTLYAVNLT-------GP- 202 (391)
T ss_pred CCHHHHHH----HHHHHHhCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhC--CcceEEEEcC-------CC-
Confidence 46666655 4445666899988 222 22222 2344444444 3456 4444455442 22
Q ss_pred HHHHHH---HhhcCCCceEEEECCCChhhHHHHHHHHhh--hcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHH
Q 019107 230 ILECAS---IADSCEQVVAVGINCTSPRFIHGLILSVRK--VTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIG 304 (346)
Q Consensus 230 ~~~av~---~~~~~~~~~avGvNC~~p~~~~~~l~~l~~--~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (346)
..+..+ .+.+ .++.++++|....- ...++.+++ ....|+.+.|+.-..+... +..+++.. .-+.+
T Consensus 203 ~~em~~ra~~~~~-~G~~~~mv~~~~~G--~~~l~~l~~~~~~~lpIhaHra~~ga~~~~-----~~~Gis~~--~~l~k 272 (391)
T cd08209 203 VFTLKEKARRLVE-AGANALLFNVFAYG--LDVLEALASDPEINVPIFAHPAFAGALYGS-----PDYGIAAS--VLLGT 272 (391)
T ss_pred HHHHHHHHHHHHH-hCCCEEEEeccccc--hHHHHHHHhcCcCCcEEEecCCcccccccC-----CCCCCcHH--HHHHH
Confidence 234433 3333 46778888885211 223444444 3467898888852111110 01112211 12223
Q ss_pred HHHHcCCeE-----EeecCCCchHHHHHHHHHHcC
Q 019107 305 KWRDAGASL-----FGGCCRTTPNTIKAISRVLSN 334 (346)
Q Consensus 305 ~~~~~G~~i-----vGGCCGt~P~hI~al~~~~~~ 334 (346)
-|+-.|+.. +||==..+++...++++.+..
T Consensus 273 l~RLaGaD~~~~~~~~Gk~~~~~~~~~~~~~~~~~ 307 (391)
T cd08209 273 LMRLAGADAVLFPSPYGSVALSKEEALAIAEALRR 307 (391)
T ss_pred HHHHcCCCccccCCccCCcCCCHHHHHHHHHHHhC
Confidence 344455433 244444566666667666543
No 417
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=39.59 E-value=2.6e+02 Score=28.36 Aligned_cols=104 Identities=17% Similarity=0.197 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEccCC-------CHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHH
Q 019107 162 SLETLKEFHRRRVLILANSGADLIAFETIP-------NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECA 234 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~-------~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av 234 (346)
+.+.+++.|.+ + ..+.|++++|-.. .+.+-....+.++..+ .||++-...+ . .+.++...+
T Consensus 63 ~~~~i~~~~~~----~-~~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~--~pVILV~~~~---~--~~~t~~al~ 130 (449)
T TIGR00379 63 SEAQIQECFHR----H-SKGTDYSIIEGVRGLYDGISAITDYGSTASVAKALD--APIVLVMNCQ---R--LSRSAAAIV 130 (449)
T ss_pred CHHHHHHHHHH----h-cccCCEEEEecCCccccCCCCCCCCccHHHHHHHhC--CCEEEEECCc---h--HHHHHHHHH
Confidence 45666665543 2 2467999999651 1112233556777765 9999877543 1 122333322
Q ss_pred HHh---hcCCCceEEEECCCCh-hhHHHHHHHHhhhcCCc-EEEeeCC
Q 019107 235 SIA---DSCEQVVAVGINCTSP-RFIHGLILSVRKVTSKP-VIIYPNS 277 (346)
Q Consensus 235 ~~~---~~~~~~~avGvNC~~p-~~~~~~l~~l~~~~~~p-l~vypN~ 277 (346)
... +....+.+|-+|++.+ .......+.+.+....| +++-|..
T Consensus 131 ~~~~~~~~~i~i~GvIlN~v~~~~~~~~~~~~i~~~~gipvLG~IP~~ 178 (449)
T TIGR00379 131 LGYRSFDPGVKLKGVILNRVGSERHLEKLKIAVEPLRGIPILGVIPRQ 178 (449)
T ss_pred HHHHhhCCCCCEEEEEEECCCCHHHHHHHHHHHHHhCCCCEEEEecCc
Confidence 111 2223577899999865 33334444555555677 4555654
No 418
>PF03481 SUA5: Putative GTP-binding controlling metal-binding; InterPro: IPR005145 The function of this domain is unknown, it is found in P32579 from SWISSPROT and its relatives. It is found C-terminal to the IPR006070 from INTERPRO.; PDB: 2EQA_A 3AJE_A 4E1B_A 2YV4_A.
Probab=39.51 E-value=41 Score=27.66 Aligned_cols=44 Identities=23% Similarity=0.121 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHH
Q 019107 162 SLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEE 205 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~ 205 (346)
+.+++....-..++.+-+.|+|.|++|.+|.-.+..++.+-+++
T Consensus 79 d~~~~A~~Lf~~LR~~D~~~~~~I~ie~~~~~~~g~Ai~dRL~R 122 (125)
T PF03481_consen 79 DPEEAARNLFAALRELDELGVDLILIEGPPETGLGLAIMDRLRR 122 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHTT-SEEEEEEESGCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhcCCCEEEEeeCCCcCcHHHHHHHHHH
Confidence 67777666666788888899999999999977777777665554
No 419
>PRK04302 triosephosphate isomerase; Provisional
Probab=39.26 E-value=2.9e+02 Score=24.96 Aligned_cols=43 Identities=14% Similarity=0.084 Sum_probs=23.4
Q ss_pred HHHHHhCCCCEEEEccC-----------CCHHHHHHHHHHHHHhCCCCcEEEEE
Q 019107 174 VLILANSGADLIAFETI-----------PNKLEAKAYAELLEEEGITIPAWFSF 216 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~-----------~~~~E~~a~~~a~~~~~~~~pv~is~ 216 (346)
++.+.+.+.|+|.+|-. .....+..+++.+++...+.|++.-+
T Consensus 127 ~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~Gg 180 (223)
T PRK04302 127 SAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGA 180 (223)
T ss_pred HHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEEC
Confidence 33444556777776642 23445555666666532246776555
No 420
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=39.10 E-value=3.9e+02 Score=26.36 Aligned_cols=79 Identities=9% Similarity=-0.082 Sum_probs=45.2
Q ss_pred HHhCCCCEEEEccCC-------CHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCC-------CHHHHHHHhhcCCC
Q 019107 177 LANSGADLIAFETIP-------NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGD-------SILECASIADSCEQ 242 (346)
Q Consensus 177 l~~~gvD~i~~ET~~-------~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~-------~~~~av~~~~~~~~ 242 (346)
.++-|+|.+.+=.++ .++|+..+++.+++.| +|+++-...+ ...+.+.. -+.-|++... ..|
T Consensus 155 AlrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~G--lPlv~~~YpR-G~~i~~~~d~~~~~d~Ia~AaRiaa-ELG 230 (348)
T PRK09250 155 ALRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHELG--LATVLWSYLR-NSAFKKDGDYHTAADLTGQANHLAA-TIG 230 (348)
T ss_pred HHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhC--CCEEEEeccc-CcccCCcccccccHHHHHHHHHHHH-HHc
Confidence 444789988765444 3345555555566666 9988754333 33333322 2334444433 368
Q ss_pred ceEEEECCC-ChhhHHHH
Q 019107 243 VVAVGINCT-SPRFIHGL 259 (346)
Q Consensus 243 ~~avGvNC~-~p~~~~~~ 259 (346)
++.|=++-+ .++....+
T Consensus 231 ADIVKv~yp~~~~~f~~v 248 (348)
T PRK09250 231 ADIIKQKLPTNNGGYKAI 248 (348)
T ss_pred CCEEEecCCCChhhHHHh
Confidence 999999986 44444333
No 421
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=38.75 E-value=1.5e+02 Score=27.99 Aligned_cols=59 Identities=22% Similarity=0.230 Sum_probs=40.6
Q ss_pred HHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEE
Q 019107 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI 248 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGv 248 (346)
+....+.|+|+|.+..| .+++++.+++.++. .+|+.++ .|-++..+...+. .++++|.+
T Consensus 191 a~~A~~~gaDyI~ld~~-~~e~lk~~v~~~~~---~ipi~As----------GGI~~~ni~~~a~--~Gvd~Isv 249 (265)
T TIGR00078 191 AEEAAEAGADIIMLDNM-KPEEIKEAVQLLKG---RVLLEAS----------GGITLDNLEEYAE--TGVDVISS 249 (265)
T ss_pred HHHHHHcCCCEEEECCC-CHHHHHHHHHHhcC---CCcEEEE----------CCCCHHHHHHHHH--cCCCEEEe
Confidence 33455689999999987 55777777775532 2565432 5677777777664 47888888
No 422
>PRK08185 hypothetical protein; Provisional
Probab=38.68 E-value=2.1e+02 Score=27.27 Aligned_cols=68 Identities=18% Similarity=0.164 Sum_probs=38.4
Q ss_pred CCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCC-----------------------CcccCCCCHHHHHHH
Q 019107 180 SGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDG-----------------------INVVSGDSILECASI 236 (346)
Q Consensus 180 ~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~-----------------------~~l~~G~~~~~av~~ 236 (346)
.+-=+..|.+ .+++-++++++++.+.+ .|+++.++-..- -+|.+|.+++.+...
T Consensus 11 ~~yaV~AfN~-~n~e~~~avi~AAee~~--sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~lHLDHg~~~e~i~~a 87 (283)
T PRK08185 11 HQFAVGAFNV-ADSCFLRAVVEEAEANN--APAIIAIHPNELDFLGDNFFAYVRERAKRSPVPFVIHLDHGATIEDVMRA 87 (283)
T ss_pred cCceEEEEEe-CCHHHHHHHHHHHHHhC--CCEEEEeCcchhhhccHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHH
Confidence 3444444443 35556666666665543 566665543110 134577777776666
Q ss_pred hhcCCCceEEEECCCC
Q 019107 237 ADSCEQVVAVGINCTS 252 (346)
Q Consensus 237 ~~~~~~~~avGvNC~~ 252 (346)
++ .+...|++-.++
T Consensus 88 i~--~Gf~SVM~D~S~ 101 (283)
T PRK08185 88 IR--CGFTSVMIDGSL 101 (283)
T ss_pred HH--cCCCEEEEeCCC
Confidence 64 367788888875
No 423
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=38.38 E-value=3.6e+02 Score=25.72 Aligned_cols=81 Identities=15% Similarity=0.092 Sum_probs=41.4
Q ss_pred HHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCC--CHHHHHHHhhcCCCceEEEECCC
Q 019107 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGD--SILECASIADSCEQVVAVGINCT 251 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~--~~~~av~~~~~~~~~~avGvNC~ 251 (346)
++.+.+.|+|.+-++.-.++.|++ +..+.++.++=.+ ++...+..|+ .+.+.++.+-.. +...+...|.
T Consensus 237 l~~~~~~g~d~~~~d~~~dl~e~~------~~~g~~~~i~Gni--dp~~~l~~gt~e~i~~~~~~~l~~-g~~Il~~Gc~ 307 (326)
T cd03307 237 LEYIAQCGFDGISVDEKVDVKTAK------EIVGGRAALIGNV--SPSQTLLNGTPEDVKAEARKCLED-GVDILAPGCG 307 (326)
T ss_pred HHHHHHcCCCeecccccCCHHHHH------HHcCCceEEEeCC--ChHHHhcCCCHHHHHHHHHHHHHc-cCCEecCcCC
Confidence 445666799999888877887754 3333223333222 3222344553 233333333222 3345666775
Q ss_pred -C----hhhHHHHHHHH
Q 019107 252 -S----PRFIHGLILSV 263 (346)
Q Consensus 252 -~----p~~~~~~l~~l 263 (346)
. ++.+..+++..
T Consensus 308 i~~~tp~env~a~v~a~ 324 (326)
T cd03307 308 IAPRTPLANLKAMVEAR 324 (326)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 2 35555555543
No 424
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=38.18 E-value=1.4e+02 Score=27.73 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=43.0
Q ss_pred EEEEEE-cCCCcccCCCCHHHHHHHhhcCCCceEEEECCC-C--hhhHHHHHHHHhhhcCCcEEEeeCCC
Q 019107 213 WFSFNS-KDGINVVSGDSILECASIADSCEQVVAVGINCT-S--PRFIHGLILSVRKVTSKPVIIYPNSG 278 (346)
Q Consensus 213 ~is~~~-~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~-~--p~~~~~~l~~l~~~~~~pl~vypN~g 278 (346)
|..|+. +++.. +...+.++.+.. .+-++|.|--+ + -+.+..++++++...+.|+++.|++.
T Consensus 16 ~~H~tliDP~k~----~~~~ei~~~~~~-~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~ 80 (240)
T COG1646 16 KRHLTLIDPDKT----EEADEIAEAAAE-AGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGSP 80 (240)
T ss_pred ceEEEEeCcccc----cccHHHHHHHHH-cCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecCCh
Confidence 777775 44432 233455555544 46799999887 3 36799999999977899999999764
No 425
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=38.13 E-value=3.7e+02 Score=25.76 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=29.4
Q ss_pred HHHHHhCC-CCEEEEcc-CC----------CHHHHHHHHHHHHHhCCCCcEEEEEEE
Q 019107 174 VLILANSG-ADLIAFET-IP----------NKLEAKAYAELLEEEGITIPAWFSFNS 218 (346)
Q Consensus 174 i~~l~~~g-vD~i~~ET-~~----------~~~E~~a~~~a~~~~~~~~pv~is~~~ 218 (346)
++.+.+++ +|+|-+-. -| +.+.+..+++++++.- ++|+++-++.
T Consensus 111 a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~-~~Pv~vKlsp 166 (310)
T PRK02506 111 LKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYF-TKPLGVKLPP 166 (310)
T ss_pred HHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhc-CCccEEecCC
Confidence 44455666 89886642 22 3566777788887754 6899988864
No 426
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=38.11 E-value=1.5e+02 Score=28.15 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCEEE------------EccCCCHHHHHHHHHHHHH--hCCCCcEEEEEEEcCCCcccCC---CCHHHHH
Q 019107 172 RRVLILANSGADLIA------------FETIPNKLEAKAYAELLEE--EGITIPAWFSFNSKDGINVVSG---DSILECA 234 (346)
Q Consensus 172 ~~i~~l~~~gvD~i~------------~ET~~~~~E~~a~~~a~~~--~~~~~pv~is~~~~~~~~l~~G---~~~~~av 234 (346)
+|++.+.++|+|+|+ .+|..+++|+...++.+.+ ...+.-+++-+ +| .+++|+-
T Consensus 161 e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~---------hGGPI~~p~D~~ 231 (268)
T PF09370_consen 161 EQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLC---------HGGPIATPEDAQ 231 (268)
T ss_dssp HHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEE---------ECTTB-SHHHHH
T ss_pred HHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEE---------eCCCCCCHHHHH
Q ss_pred HHhhcCCCceEE
Q 019107 235 SIADSCEQVVAV 246 (346)
Q Consensus 235 ~~~~~~~~~~av 246 (346)
..++...++.++
T Consensus 232 ~~l~~t~~~~Gf 243 (268)
T PF09370_consen 232 YVLRNTKGIHGF 243 (268)
T ss_dssp HHHHH-TTEEEE
T ss_pred HHHhcCCCCCEE
No 427
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=38.10 E-value=50 Score=30.89 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=28.4
Q ss_pred CChHHHHHHHHHHHHcCCeE--EeecCCCch-------H-HHHHHHHHHcCC
Q 019107 294 VRDEDFVSYIGKWRDAGASL--FGGCCRTTP-------N-TIKAISRVLSNK 335 (346)
Q Consensus 294 ~~~~~~~~~~~~~~~~G~~i--vGGCCGt~P-------~-hI~al~~~~~~~ 335 (346)
.++++..+.++++++.||.+ ||| ++|.| + +++.|...++..
T Consensus 20 ~~~~~~~~~a~~~~~~GA~iIDIG~-~st~p~~~~i~~~~E~~rl~~~v~~~ 70 (257)
T TIGR01496 20 LSVDKAVAHAERMLEEGADIIDVGG-ESTRPGADRVSPEEELNRVVPVIKAL 70 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC-CCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 46788999999999999998 554 44533 2 555666555533
No 428
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=38.07 E-value=4.1e+02 Score=26.62 Aligned_cols=89 Identities=15% Similarity=0.176 Sum_probs=51.2
Q ss_pred HHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEE-EEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCC
Q 019107 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFS-FNSKDGINVVSGDSILECASIADSCEQVVAVGINCT 251 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is-~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~ 251 (346)
.++.+.+.|+|++.+-..++......+++.+++.+ +++.+. +++. +++..+ ..+.+ .+++.|++.-.
T Consensus 73 ~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G--~~~~~g~~s~~--------t~~e~~-~~a~~-~GaD~I~~~pg 140 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLADDSTIEDAVRAARKYG--VRLMADLINVP--------DPVKRA-VELEE-LGVDYINVHVG 140 (430)
T ss_pred HHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcC--CEEEEEecCCC--------CHHHHH-HHHHh-cCCCEEEEEec
Confidence 56778889999998644444444566777788865 777653 2221 233333 33333 36777776542
Q ss_pred C-----hhhHHHHHHHHhhhcCCcEEE
Q 019107 252 S-----PRFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 252 ~-----p~~~~~~l~~l~~~~~~pl~v 273 (346)
. +......++++++..+.|+.+
T Consensus 141 ~~~~~~~~~~~~~l~~l~~~~~iPI~a 167 (430)
T PRK07028 141 IDQQMLGKDPLELLKEVSEEVSIPIAV 167 (430)
T ss_pred cchhhcCCChHHHHHHHHhhCCCcEEE
Confidence 1 122235666666555677655
No 429
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=38.01 E-value=1.2e+02 Score=27.63 Aligned_cols=127 Identities=21% Similarity=0.165 Sum_probs=63.6
Q ss_pred HHHHHHhCCCCEEEEccC----------CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCC---HHHHHHHhhc
Q 019107 173 RVLILANSGADLIAFETI----------PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDS---ILECASIADS 239 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~----------~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~---~~~av~~~~~ 239 (346)
.++...+.|+|-+-+=-. ...+|+..+++.+++.+ +|+++-.... +....+... +..+++.+..
T Consensus 81 ~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~g--l~vIlE~~l~-~~~~~~~~~~~~I~~a~ria~e 157 (236)
T PF01791_consen 81 EVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYG--LKVILEPYLR-GEEVADEKKPDLIARAARIAAE 157 (236)
T ss_dssp HHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSE--EEEEEEECEC-HHHBSSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCC--cEEEEEEecC-chhhcccccHHHHHHHHHHHHH
Confidence 345556677766532111 12346666677677544 8998873332 222222222 4555555444
Q ss_pred CCCceEEEECCC----C-hhhHHHHHHHHhhhcCCc--EEEeeCCCCccccccccccccCCCChHHH---HHHHHHHHHc
Q 019107 240 CEQVVAVGINCT----S-PRFIHGLILSVRKVTSKP--VIIYPNSGETYNAELKKWVESTGVRDEDF---VSYIGKWRDA 309 (346)
Q Consensus 240 ~~~~~avGvNC~----~-p~~~~~~l~~l~~~~~~p--l~vypN~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 309 (346)
.+++.|=.+-. . ++. ..+++++-.....| +.+...+|. +.++| .+.+.+.++.
T Consensus 158 -~GaD~vKt~tg~~~~~t~~~-~~~~~~~~~~~~~p~~~~Vk~sGGi---------------~~~~~~~~l~~a~~~i~a 220 (236)
T PF01791_consen 158 -LGADFVKTSTGKPVGATPED-VELMRKAVEAAPVPGKVGVKASGGI---------------DAEDFLRTLEDALEFIEA 220 (236)
T ss_dssp -TT-SEEEEE-SSSSCSHHHH-HHHHHHHHHTHSSTTTSEEEEESSS---------------SHHHHHHSHHHHHHHHHT
T ss_pred -hCCCEEEecCCccccccHHH-HHHHHHHHHhcCCCcceEEEEeCCC---------------ChHHHHHHHHHHHHHHHc
Confidence 57777666554 1 122 23333333333556 333333332 23433 4556667799
Q ss_pred CCeEEeecCC
Q 019107 310 GASLFGGCCR 319 (346)
Q Consensus 310 G~~ivGGCCG 319 (346)
|+..+|=++|
T Consensus 221 Ga~~~G~~~G 230 (236)
T PF01791_consen 221 GADRIGTSSG 230 (236)
T ss_dssp THSEEEEEEH
T ss_pred CChhHHHHHH
Confidence 9999997765
No 430
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=37.98 E-value=59 Score=27.20 Aligned_cols=40 Identities=13% Similarity=0.122 Sum_probs=28.5
Q ss_pred CChHHHHHHHHHHHHcCCeEEeecC--CCchHHHHHHHHHHcCCC
Q 019107 294 VRDEDFVSYIGKWRDAGASLFGGCC--RTTPNTIKAISRVLSNKS 336 (346)
Q Consensus 294 ~~~~~~~~~~~~~~~~G~~ivGGCC--Gt~P~hI~al~~~~~~~~ 336 (346)
.+++++.+. +.+.++.+||-|. +++.+.++++.+.++...
T Consensus 40 ~s~e~~v~a---a~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g 81 (132)
T TIGR00640 40 QTPEEIARQ---AVEADVHVVGVSSLAGGHLTLVPALRKELDKLG 81 (132)
T ss_pred CCHHHHHHH---HHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcC
Confidence 346666554 5677899999877 567777788887777654
No 431
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=37.92 E-value=3.7e+02 Score=25.73 Aligned_cols=125 Identities=14% Similarity=0.190 Sum_probs=67.8
Q ss_pred HHHHHHHhCCC-CEEEEccCCCHHHHHH---------HHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCC
Q 019107 172 RRVLILANSGA-DLIAFETIPNKLEAKA---------YAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCE 241 (346)
Q Consensus 172 ~~i~~l~~~gv-D~i~~ET~~~~~E~~a---------~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~ 241 (346)
+|++...++|+ -+.++|-+|+--.... -+++.++. .++||+--.. .|. +.++-... + .
T Consensus 19 ~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~-V~iPVIGi~K--------~~~-~~Ea~~L~-e-a 86 (283)
T cd04727 19 EQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDA-VSIPVMAKVR--------IGH-FVEAQILE-A-L 86 (283)
T ss_pred HHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHh-CCCCeEEeee--------hhH-HHHHHHHH-H-c
Confidence 57777777774 7778898884321110 12233333 2599984442 222 55655544 3 4
Q ss_pred CceEEEECCCC-hhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeEEeec-CC
Q 019107 242 QVVAVGINCTS-PRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGC-CR 319 (346)
Q Consensus 242 ~~~avGvNC~~-p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivGGC-CG 319 (346)
+++.| -|+. +.....++..++...+.|+++-.. .+.+ +.+-.+.|+.+||=. +|
T Consensus 87 GvDiI--DaT~r~rP~~~~~~~iK~~~~~l~MAD~s---------------------tleE-al~a~~~Gad~I~TTl~g 142 (283)
T cd04727 87 GVDMI--DESEVLTPADEEHHIDKHKFKVPFVCGAR---------------------NLGE-ALRRISEGAAMIRTKGEA 142 (283)
T ss_pred CCCEE--eccCCCCcHHHHHHHHHHHcCCcEEccCC---------------------CHHH-HHHHHHCCCCEEEecCCC
Confidence 78887 5873 333566777776544666554211 1222 233457888888844 23
Q ss_pred CchH------HHHHHHHHH
Q 019107 320 TTPN------TIKAISRVL 332 (346)
Q Consensus 320 t~P~------hI~al~~~~ 332 (346)
.|++ |++.|...+
T Consensus 143 yT~~~~~~~~~~~~i~~~i 161 (283)
T cd04727 143 GTGNVVEAVRHMRAVNGEI 161 (283)
T ss_pred CCCcHHHHHHHHHHHHHHH
Confidence 4444 555555444
No 432
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=37.77 E-value=27 Score=33.88 Aligned_cols=25 Identities=28% Similarity=0.305 Sum_probs=21.7
Q ss_pred CCChHHHHHHHHHHHHhhcceeecc
Q 019107 51 VSSPHLVRKVHLDYLDAGANIIITA 75 (346)
Q Consensus 51 l~~Pe~V~~iH~~yl~AGA~iI~Tn 75 (346)
++....|.+.+..|-+||||+|+|.
T Consensus 289 ~D~~~~~~Esl~~~kRAGAd~IiTY 313 (323)
T PRK09283 289 IDEERVVLESLLSIKRAGADGILTY 313 (323)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEec
Confidence 4556789999999999999999974
No 433
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=37.45 E-value=27 Score=27.23 Aligned_cols=47 Identities=28% Similarity=0.531 Sum_probs=30.3
Q ss_pred ChhhHHHHHHHHhhhcCCc----EEEeeCCCCccccccccccccCCCChHHHHHHHHHHHH-cCC
Q 019107 252 SPRFIHGLILSVRKVTSKP----VIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRD-AGA 311 (346)
Q Consensus 252 ~p~~~~~~l~~l~~~~~~p----l~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~ 311 (346)
.-+.+..++..+.+.+.-| |+.||+.+. ..+|+...+.+++|+. .|-
T Consensus 29 ~ee~~d~lv~hF~~iteHP~gSDLIfYP~~~~-------------edsPegIv~~vKeWRa~nG~ 80 (85)
T PF01320_consen 29 TEEEHDELVDHFEKITEHPDGSDLIFYPEDGR-------------EDSPEGIVKEVKEWRASNGK 80 (85)
T ss_dssp SCHHHHHHHHHHHHHH--TTTTHHHHS-STTS-------------TSSHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHcCCCCCCCceeeeCCCCC-------------CCCHHHHHHHHHHHHHHcCC
Confidence 3456777777776654444 777877653 1358999999999985 453
No 434
>TIGR01346 isocit_lyase isocitrate lyase. Isocitrate lyase and malate synthase are the enzymes of the glyoxylate shunt, a pathway associated with the TCA cycle.
Probab=37.40 E-value=52 Score=34.11 Aligned_cols=58 Identities=22% Similarity=0.144 Sum_probs=37.4
Q ss_pred CCCCEEEEcc-CCCHHHHHHHHHHHHHhCCCCcEEEEEE--EcCCCcccCCCCHHHHHHHhh
Q 019107 180 SGADLIAFET-IPNKLEAKAYAELLEEEGITIPAWFSFN--SKDGINVVSGDSILECASIAD 238 (346)
Q Consensus 180 ~gvD~i~~ET-~~~~~E~~a~~~a~~~~~~~~pv~is~~--~~~~~~l~~G~~~~~av~~~~ 238 (346)
+.+|+|++|| -|++.+++...+.+++.-+++...-.++ |+=..+ .+.+.+...+..+-
T Consensus 378 PyaDliW~ET~~Pdl~~A~~Fa~~v~~~~P~k~LaYN~SPSFNW~~~-~~d~~~~~F~~~L~ 438 (527)
T TIGR01346 378 PYADLIWMETSTPDLELAKKFAEGVKSKFPDQLLAYNLSPSFNWSAH-MEDDEIAKFIQELG 438 (527)
T ss_pred ccccEEEecCCCCCHHHHHHHHHHHHHHCCCCeEEecCCCCcccccc-CCHHHHHHHHHHHH
Confidence 6799999999 8999999999999988543443332222 111222 34455555555553
No 435
>PRK14847 hypothetical protein; Provisional
Probab=37.34 E-value=3.4e+02 Score=26.55 Aligned_cols=21 Identities=14% Similarity=0.090 Sum_probs=15.5
Q ss_pred eecCCCchHHHHHHHHHHcCC
Q 019107 315 GGCCRTTPNTIKAISRVLSNK 335 (346)
Q Consensus 315 GGCCGt~P~hI~al~~~~~~~ 335 (346)
|--.+...+.+.++++.+...
T Consensus 296 g~~~~id~~~l~~~~~~v~~~ 316 (333)
T PRK14847 296 GIASGLDFRDMAALRACVSEC 316 (333)
T ss_pred CCCCCcCHHHHHHHHHHHHHH
Confidence 445678888888888887653
No 436
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=37.17 E-value=1.2e+02 Score=27.93 Aligned_cols=70 Identities=14% Similarity=0.094 Sum_probs=49.5
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHh--CCCCcEEEEEEEcCCCcccCCCCHHHH---HHHhh-cCCCceEEEECCCCh
Q 019107 181 GADLIAFETIPNKLEAKAYAELLEEE--GITIPAWFSFNSKDGINVVSGDSILEC---ASIAD-SCEQVVAVGINCTSP 253 (346)
Q Consensus 181 gvD~i~~ET~~~~~E~~a~~~a~~~~--~~~~pv~is~~~~~~~~l~~G~~~~~a---v~~~~-~~~~~~avGvNC~~p 253 (346)
.+|+ ++|+-+++-+..+-+++.+. +...+|+|-+.+..+. ...|.++.++ ++.+. .+.++.-.|+-|..|
T Consensus 89 ~~~~--ihsvDs~~la~~L~~~a~~~~~~~~~~VlIqVn~g~e~-~K~Gv~~~e~~~l~~~i~~~~~~L~l~GLMt~~~ 164 (227)
T cd06822 89 NLYM--VETVDSEKLADKLNKAWEKLGEREPLKVMVQVNTSGEE-SKSGLEPSEAVELVKHIIEECPNLKFSGLMTIGS 164 (227)
T ss_pred cccE--EEecCCHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC-CCCCCCHHHHHHHHHHHHhhCCCceEEEEEeeCC
Confidence 4564 59999999988888888776 6678999999775422 2477765554 44444 556778888888654
No 437
>PRK08005 epimerase; Validated
Probab=36.97 E-value=3.1e+02 Score=24.90 Aligned_cols=78 Identities=22% Similarity=0.218 Sum_probs=47.4
Q ss_pred HHHHHHhCCCCEEE--EccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECC
Q 019107 173 RVLILANSGADLIA--FETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (346)
Q Consensus 173 ~i~~l~~~gvD~i~--~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC 250 (346)
.++.|.++|+|.|. +|+.+++ ..+++.+|+.| ..+.+++. .++++......+. .++.|.|-.
T Consensus 73 ~i~~~~~~gad~It~H~Ea~~~~---~~~l~~Ik~~G--~k~GlAln--------P~Tp~~~i~~~l~---~vD~VlvMs 136 (210)
T PRK08005 73 WLPWLAAIRPGWIFIHAESVQNP---SEILADIRAIG--AKAGLALN--------PATPLLPYRYLAL---QLDALMIMT 136 (210)
T ss_pred HHHHHHHhCCCEEEEcccCccCH---HHHHHHHHHcC--CcEEEEEC--------CCCCHHHHHHHHH---hcCEEEEEE
Confidence 35667788999886 4765554 34667777766 66777764 3466666655554 345555555
Q ss_pred CCh-----hhHHHHHHHHhhh
Q 019107 251 TSP-----RFIHGLILSVRKV 266 (346)
Q Consensus 251 ~~p-----~~~~~~l~~l~~~ 266 (346)
+.| ..+...++++++.
T Consensus 137 V~PGf~GQ~f~~~~~~KI~~l 157 (210)
T PRK08005 137 SEPDGRGQQFIAAMCEKVSQS 157 (210)
T ss_pred ecCCCccceecHHHHHHHHHH
Confidence 433 4556666655543
No 438
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=36.83 E-value=47 Score=32.32 Aligned_cols=41 Identities=7% Similarity=0.182 Sum_probs=34.7
Q ss_pred CChHHHHHHHHHHHHcCCeEEeecCCCchHHHHHHHHHHcCC
Q 019107 294 VRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSNK 335 (346)
Q Consensus 294 ~~~~~~~~~~~~~~~~G~~ivGGCCGt~P~hI~al~~~~~~~ 335 (346)
+++++|.+++++..+.+. +++.+.|+++++++.+...++..
T Consensus 66 ~~~E~~~sfvrk~k~~~L-~v~~SvG~t~e~~~r~~~lv~a~ 106 (321)
T TIGR01306 66 FDEESRIPFIKDMQERGL-FASISVGVKACEYEFVTQLAEEA 106 (321)
T ss_pred CCHHHHHHHHHhcccccc-EEEEEcCCCHHHHHHHHHHHhcC
Confidence 468888888888777777 89999999999999999888754
No 439
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=36.74 E-value=3e+02 Score=26.06 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=52.1
Q ss_pred HHHHHHHHhCCCCEEEEc-cCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEEC
Q 019107 171 RRRVLILANSGADLIAFE-TIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGIN 249 (346)
Q Consensus 171 ~~~i~~l~~~gvD~i~~E-T~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvN 249 (346)
...+++..+.|+.+.+-+ +-.+.++++ +.. +.|+|+.+....+ -+...+.++.+.. .++++|-+|
T Consensus 84 ~~la~aa~~~g~~~~~~~~~~~~~~~i~-------~~~-~~~~~~ql~~~~~-----~~~~~~~i~~~~~-~g~~~i~l~ 149 (299)
T cd02809 84 LATARAAAAAGIPFTLSTVSTTSLEEVA-------AAA-PGPRWFQLYVPRD-----REITEDLLRRAEA-AGYKALVLT 149 (299)
T ss_pred HHHHHHHHHcCCCEEecCCCcCCHHHHH-------Hhc-CCCeEEEEeecCC-----HHHHHHHHHHHHH-cCCCEEEEe
Confidence 345566677888877644 333444332 222 3799999865322 1233455665554 467777766
Q ss_pred CCChh----hHHHHHHHHhhhcCCcEEEe
Q 019107 250 CTSPR----FIHGLILSVRKVTSKPVIIY 274 (346)
Q Consensus 250 C~~p~----~~~~~l~~l~~~~~~pl~vy 274 (346)
+..|. .....++.+++.++.|+++.
T Consensus 150 ~~~p~~~~~~~~~~i~~l~~~~~~pvivK 178 (299)
T cd02809 150 VDTPVLGRRLTWDDLAWLRSQWKGPLILK 178 (299)
T ss_pred cCCCCCCCCCCHHHHHHHHHhcCCCEEEe
Confidence 54332 12356677777777898876
No 440
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=36.64 E-value=3.8e+02 Score=25.42 Aligned_cols=113 Identities=21% Similarity=0.286 Sum_probs=69.5
Q ss_pred CcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcE
Q 019107 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPA 212 (346)
Q Consensus 133 ~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv 212 (346)
+.+|.-.+ |+|+ |. .+.++ +.+..++.+.++|+|.+=+|-= .|+...++.+.+.+ .||
T Consensus 76 ~~~vv~Dm-PF~s-----------y~--~s~~~---a~~nA~r~~ke~gA~aVKlEGG---~~~~~~i~~L~~~g--IPV 133 (268)
T COG0413 76 NAFVVADL-PFGS-----------YE--VSPEQ---ALKNAARLMKEAGADAVKLEGG---EEMAETIKRLTERG--IPV 133 (268)
T ss_pred CeeEEeCC-CCcc-----------cC--CCHHH---HHHHHHHHHHHhCCCEEEEcCC---HHHHHHHHHHHHcC--Cce
Confidence 55666666 5554 22 24444 3445566677799999999976 45555666777755 999
Q ss_pred EEEEEEcCCCc------ccCCCCHHHHHHHhh-----cCCCceEEEECCCChhhHHHHHHHHhhhcCCcE
Q 019107 213 WFSFNSKDGIN------VVSGDSILECASIAD-----SCEQVVAVGINCTSPRFIHGLILSVRKVTSKPV 271 (346)
Q Consensus 213 ~is~~~~~~~~------l~~G~~~~~av~~~~-----~~~~~~avGvNC~~p~~~~~~l~~l~~~~~~pl 271 (346)
+-.+-+.+..- =.-|.+-+++-+.++ ...++.++-+.|+.. ++.+.+.+..+.|.
T Consensus 134 ~gHiGLtPQ~v~~~GGykvqGr~~~~a~~l~~dA~ale~AGaf~ivlE~Vp~----~lA~~IT~~lsiPt 199 (268)
T COG0413 134 MGHIGLTPQSVNWLGGYKVQGRTEESAEKLLEDAKALEEAGAFALVLECVPA----ELAKEITEKLSIPT 199 (268)
T ss_pred EEEecCChhhhhccCCeeeecCCHHHHHHHHHHHHHHHhcCceEEEEeccHH----HHHHHHHhcCCCCE
Confidence 98886654331 123444343333331 125899999999963 34455555556773
No 441
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=36.61 E-value=6e+02 Score=27.77 Aligned_cols=80 Identities=20% Similarity=0.191 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEc-----cCCCHHHHHHHHHHHHHhC---CCCcEEEEEEEcCCCcccCCCCHHHHH
Q 019107 163 LETLKEFHRRRVLILANSGADLIAFE-----TIPNKLEAKAYAELLEEEG---ITIPAWFSFNSKDGINVVSGDSILECA 234 (346)
Q Consensus 163 ~~e~~~~~~~~i~~l~~~gvD~i~~E-----T~~~~~E~~a~~~a~~~~~---~~~pv~is~~~~~~~~l~~G~~~~~av 234 (346)
.+++...|.+.++.|.++||+.|=+. +-+...+..++.++.+... .+.+++++..+. ++.+..
T Consensus 173 l~~L~~~y~~~l~~L~~~G~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~ki~l~tyFg---------~~~~~~ 243 (750)
T TIGR01371 173 LEKLLPVYKEVLKKLAEAGATWVQIDEPALVTDLSKEDLAAFKEAYTELSEALSGLKLLLQTYFD---------SVGDAL 243 (750)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEeeCchhcCCCCHHHHHHHHHHHHHHHhccCCceEEEECCCC---------chHHHH
Confidence 46678889999999999999987432 2223335555656655432 134555555442 244555
Q ss_pred HHhhcCCCceEEEECCCC
Q 019107 235 SIADSCEQVVAVGINCTS 252 (346)
Q Consensus 235 ~~~~~~~~~~avGvNC~~ 252 (346)
..+.+ ..++++++-+++
T Consensus 244 ~~l~~-lpvd~l~lD~v~ 260 (750)
T TIGR01371 244 EALVS-LPVKGIGLDFVH 260 (750)
T ss_pred HHHHc-CCCCEEEEEecc
Confidence 55544 357788888774
No 442
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=36.56 E-value=3.6e+02 Score=25.22 Aligned_cols=149 Identities=14% Similarity=0.137 Sum_probs=86.2
Q ss_pred CeEEEecchH----------HHHHHc-CCCCCCCccchhccCCChHHHHHHHHHHHHhhcc--eeeccccccCHHhHHh-
Q 019107 21 GYSVVDGGFA----------TELERH-GADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGAN--IIITASYQATIQGFEA- 86 (346)
Q Consensus 21 ~~lilDGg~g----------t~L~~~-G~~~~~~lwsa~~ll~~Pe~V~~iH~~yl~AGA~--iI~TnTy~as~~~l~~- 86 (346)
-+.|.||+.| ..|++. |++.- +..+.. -.++..++.....+-.+|.+ ++.|--.-..-. -..
T Consensus 31 ~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i-~Hlt~r--~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~-~~~~ 106 (272)
T TIGR00676 31 FVSVTYGAGGSTRDRTVRIVRRIKKETGIPTV-PHLTCI--GATREEIREILREYRELGIRHILALRGDPPKGEG-TPTP 106 (272)
T ss_pred EEEeccCCCCCcHHHHHHHHHHHHHhcCCCee-EEeeec--CCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCC-CCCC
Confidence 4789999775 445533 65431 233332 24778899999999999988 434544432211 000
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHH
Q 019107 87 KGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETL 166 (346)
Q Consensus 87 ~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~ 166 (346)
-.++ .+++|-+-.++.+ .+..|++..=|.|- +.. .+.++-
T Consensus 107 ~~f~---------~a~~Li~~i~~~~-------------------~~f~ig~a~~Pegh----------p~~--~~~~~~ 146 (272)
T TIGR00676 107 GGFN---------YASELVEFIRNEF-------------------GDFDIGVAAYPEKH----------PEA--PNLEED 146 (272)
T ss_pred CCCC---------CHHHHHHHHHHhc-------------------CCeeEEEEeCCCCC----------CCC--CCHHHH
Confidence 1121 2344443333221 14566665556542 111 133322
Q ss_pred HHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEE
Q 019107 167 KEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFN 217 (346)
Q Consensus 167 ~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~ 217 (346)
.+ +++.=.++|+|+++=--+.+.+-....++.+++.+.++|++..+.
T Consensus 147 ~~----~L~~K~~aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi~~PIi~Gi~ 193 (272)
T TIGR00676 147 IE----NLKRKVDAGADYAITQLFFDNDDYYRFVDRCRAAGIDVPIIPGIM 193 (272)
T ss_pred HH----HHHHHHHcCCCeEeeccccCHHHHHHHHHHHHHcCCCCCEecccC
Confidence 22 233345589999987777788888888888888877899998885
No 443
>PLN02892 isocitrate lyase
Probab=36.12 E-value=58 Score=34.05 Aligned_cols=33 Identities=36% Similarity=0.337 Sum_probs=27.6
Q ss_pred CCCCEEEEcc-CCCHHHHHHHHHHHHHhCCCCcE
Q 019107 180 SGADLIAFET-IPNKLEAKAYAELLEEEGITIPA 212 (346)
Q Consensus 180 ~gvD~i~~ET-~~~~~E~~a~~~a~~~~~~~~pv 212 (346)
+.+|+|++|| -|++.+++...+.+++.-+++..
T Consensus 399 PyaDliW~ET~~Pdl~~A~~Fa~~V~~~~P~k~L 432 (570)
T PLN02892 399 PYADLIWMETASPDLAEATKFAEGVKAKHPEIML 432 (570)
T ss_pred cccCEEEecCCCCCHHHHHHHHHHHHHhCCCCee
Confidence 6799999998 89999999999999985434433
No 444
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=35.97 E-value=29 Score=33.40 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.8
Q ss_pred CCChHHHHHHHHHHHHhhcceeecc
Q 019107 51 VSSPHLVRKVHLDYLDAGANIIITA 75 (346)
Q Consensus 51 l~~Pe~V~~iH~~yl~AGA~iI~Tn 75 (346)
++....|-+.+..|-+||||+|+|.
T Consensus 294 ide~~~vlEsL~~~kRAGAd~IiTY 318 (330)
T COG0113 294 IDEEKVVLESLTSIKRAGADLIITY 318 (330)
T ss_pred cchHHHHHHHHHHHHhcCCCEEEee
Confidence 4667789999999999999999974
No 445
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=35.85 E-value=4.2e+02 Score=25.75 Aligned_cols=112 Identities=16% Similarity=0.098 Sum_probs=62.4
Q ss_pred CCCHHHHHH---HHHHHHHHHHhCCCCEEEEcc----------CC-----------CH----HHHHHHHHHHHHhCCCCc
Q 019107 160 AVSLETLKE---FHRRRVLILANSGADLIAFET----------IP-----------NK----LEAKAYAELLEEEGITIP 211 (346)
Q Consensus 160 ~~~~~e~~~---~~~~~i~~l~~~gvD~i~~ET----------~~-----------~~----~E~~a~~~a~~~~~~~~p 211 (346)
.+|.+|+.+ .|.+.++.+.++|.|.+=+-. -| ++ .=+..+++++++.- +.+
T Consensus 130 ~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~v-g~~ 208 (343)
T cd04734 130 AMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAV-GPD 208 (343)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHc-CCC
Confidence 466666554 566666667789999994433 11 11 22345566666642 244
Q ss_pred EEEEEEEcCCCcccCCCCHHHHHHHh---hcCCC-ceEEEECCCC-----------------hhhHHHHHHHHhhhcCCc
Q 019107 212 AWFSFNSKDGINVVSGDSILECASIA---DSCEQ-VVAVGINCTS-----------------PRFIHGLILSVRKVTSKP 270 (346)
Q Consensus 212 v~is~~~~~~~~l~~G~~~~~av~~~---~~~~~-~~avGvNC~~-----------------p~~~~~~l~~l~~~~~~p 270 (346)
++|.+.+..+....+|.++.+.+..+ ++ .+ ++.|=|.+.. +.....+++.+++..+.|
T Consensus 209 ~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~-~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ip 287 (343)
T cd04734 209 FIVGIRISGDEDTEGGLSPDEALEIAARLAA-EGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLP 287 (343)
T ss_pred CeEEEEeehhhccCCCCCHHHHHHHHHHHHh-cCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCC
Confidence 44444443333345777887766554 33 34 6777764321 111235566667667788
Q ss_pred EEE
Q 019107 271 VII 273 (346)
Q Consensus 271 l~v 273 (346)
+++
T Consensus 288 vi~ 290 (343)
T cd04734 288 VFH 290 (343)
T ss_pred EEe
Confidence 665
No 446
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=35.51 E-value=3.6e+02 Score=25.83 Aligned_cols=80 Identities=16% Similarity=0.166 Sum_probs=50.3
Q ss_pred EEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCChhhHHHHHHHH
Q 019107 184 LIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSV 263 (346)
Q Consensus 184 ~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~p~~~~~~l~~l 263 (346)
.+++| ||...-...-.|+++.| ..++.+.. ....+.-||++.|.+..+.. . +++|.+=+... ..++.+
T Consensus 48 ~lF~e--~STRTR~SFe~A~~~LG-g~~i~l~~---~~ss~~kgEsl~Dt~~~l~~-~-~D~iv~R~~~~----~~~~~~ 115 (304)
T PRK00779 48 MIFEK--PSTRTRVSFEVGMAQLG-GHAIFLSP---RDTQLGRGEPIEDTARVLSR-Y-VDAIMIRTFEH----ETLEEL 115 (304)
T ss_pred EEecC--CCchHHHHHHHHHHHcC-CcEEEECc---ccccCCCCcCHHHHHHHHHH-h-CCEEEEcCCCh----hHHHHH
Confidence 34445 56665444445567776 34444322 22345579999999999865 3 78999887653 345555
Q ss_pred hhhcCCcEEEeeCCC
Q 019107 264 RKVTSKPVIIYPNSG 278 (346)
Q Consensus 264 ~~~~~~pl~vypN~g 278 (346)
.++.+.|+ -|+|
T Consensus 116 a~~~~vPV---INag 127 (304)
T PRK00779 116 AEYSTVPV---INGL 127 (304)
T ss_pred HHhCCCCE---EeCC
Confidence 66678886 3665
No 447
>PRK11579 putative oxidoreductase; Provisional
Probab=35.50 E-value=1.2e+02 Score=29.25 Aligned_cols=47 Identities=13% Similarity=0.071 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhCCCCEEEEc--cCCCHHHHHHHHHHHHHhCCCCcEEEEEEE
Q 019107 169 FHRRRVLILANSGADLIAFE--TIPNKLEAKAYAELLEEEGITIPAWFSFNS 218 (346)
Q Consensus 169 ~~~~~i~~l~~~gvD~i~~E--T~~~~~E~~a~~~a~~~~~~~~pv~is~~~ 218 (346)
.|.+++..++++|..++ +| --.+++|++.+++++++.+ +++.+.|..
T Consensus 76 ~H~~~~~~al~aGkhVl-~EKPla~t~~ea~~l~~~a~~~g--~~l~v~~~~ 124 (346)
T PRK11579 76 THFPLAKAALEAGKHVV-VDKPFTVTLSQARELDALAKSAG--RVLSVFHNR 124 (346)
T ss_pred HHHHHHHHHHHCCCeEE-EeCCCCCCHHHHHHHHHHHHHhC--CEEEEEeec
Confidence 58888888888998866 48 3358899999999999876 777777754
No 448
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=35.45 E-value=2.5e+02 Score=26.96 Aligned_cols=60 Identities=15% Similarity=0.097 Sum_probs=39.4
Q ss_pred CCCEEEEccCC-----CHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCC
Q 019107 181 GADLIAFETIP-----NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT 251 (346)
Q Consensus 181 gvD~i~~ET~~-----~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~ 251 (346)
++|.|.+.+|. +..+++.+.++++..+. .++-|-++ .|-++..+.+... .+++.||+-..
T Consensus 211 ~~d~I~lDn~~~~~G~~~~~~~~~~~~l~~~g~-~~~~ieaS--------GgI~~~~i~~~a~--~gvD~isvGs~ 275 (302)
T cd01571 211 KLDGVRLDTPSSRRGVFRYLIREVRWALDIRGY-KHVKIFVS--------GGLDEEDIKELED--VGVDAFGVGTA 275 (302)
T ss_pred CCcEEEECCCCCCCCCHHHHHHHHHHHHHhCCC-CCeEEEEe--------CCCCHHHHHHHHH--cCCCEEECCcc
Confidence 58999999986 56667778888776541 22333332 5667776666553 36888887764
No 449
>COG1679 Predicted aconitase [General function prediction only]
Probab=35.24 E-value=4.7e+02 Score=26.15 Aligned_cols=131 Identities=11% Similarity=0.218 Sum_probs=78.5
Q ss_pred HHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEE--EEEEEcCCCcc----------cCCCCHHHHHHHhhcC-
Q 019107 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAW--FSFNSKDGINV----------VSGDSILECASIADSC- 240 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~--is~~~~~~~~l----------~~G~~~~~av~~~~~~- 240 (346)
+-.....++-+|.+-+.|+.+++|+.--++..++ .++.+ ..+|.+.. .+ -+-..+.++.+.+...
T Consensus 210 ~G~~~~d~IP~~~~~~~p~~d~lKalgAA~atsg-avam~HvegvTPE~~-~~~~~d~~e~i~i~~~d~~da~~~l~~~~ 287 (403)
T COG1679 210 AGEAAGDGIPYFRLALFPSEDELKALGAAMATSG-AVAMYHVEGVTPEAR-ALAFGDKAEKIEIEREDIDDAWERLNTAD 287 (403)
T ss_pred HHHhccCCCCeeccCCCCCHHHHHHHHHHHhhcC-ceeEEEecCCCcccc-cccccccCceeeeeHHHHHHHHHHhhcCC
Confidence 3445557899999999999999999999988876 33332 12222211 11 1223455666666432
Q ss_pred CCceEEEECCCC--hhhHHHHHHHHhhh---cCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeEEe
Q 019107 241 EQVVAVGINCTS--PRFIHGLILSVRKV---TSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFG 315 (346)
Q Consensus 241 ~~~~avGvNC~~--p~~~~~~l~~l~~~---~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivG 315 (346)
..|+.|-+-|-| .+.+..+++.+++. .++|+.|.-... + .......-+++...+.|+++|-
T Consensus 288 ~epdli~iGcPHaS~~E~~~la~~l~~r~~~~~~~~~V~~sr~-v-------------~~~a~~~G~~~~le~~g~~vv~ 353 (403)
T COG1679 288 GEPDLIALGCPHASLEELRRLAELLKGRKRPAGVPLYVTTSRA-V-------------YAQARKEGYLAKLEELGVKVVS 353 (403)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHHHHhccCCCCCCCEEEEcCHH-H-------------HHHHhhhhhHHHHHHcCCEEec
Confidence 247888888854 56667777766554 234544422111 0 1123344456677788999999
Q ss_pred ecCCC
Q 019107 316 GCCRT 320 (346)
Q Consensus 316 GCCGt 320 (346)
+.|-.
T Consensus 354 DtC~v 358 (403)
T COG1679 354 DTCMV 358 (403)
T ss_pred CceeE
Confidence 88864
No 450
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=35.20 E-value=3.7e+02 Score=24.98 Aligned_cols=91 Identities=12% Similarity=0.115 Sum_probs=50.1
Q ss_pred HHHHHHHhCCCCEEEEccCC----CHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEE
Q 019107 172 RRVLILANSGADLIAFETIP----NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVG 247 (346)
Q Consensus 172 ~~i~~l~~~gvD~i~~ET~~----~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avG 247 (346)
++++.+.+.|+|+|=+-.-| ..+|++.++..+++.. +.| +|+ |......+...++.+.+ +-.
T Consensus 30 ~~A~~~~~~GAdiIDIG~~~~~~~~~ee~~r~v~~i~~~~-~~p--iSI---------DT~~~~v~e~aL~~~~G--~~i 95 (252)
T cd00740 30 DVARQQVEGGAQILDLNVDYGGLDGVSAMKWLLNLLATEP-TVP--LML---------DSTNWEVIEAGLKCCQG--KCV 95 (252)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCc--EEe---------eCCcHHHHHHHHhhCCC--CcE
Confidence 45666777999999766533 4556777777777642 455 455 33333333333333223 224
Q ss_pred ECCCCh----hhHHHHHHHHhhhcCCcEEEeeCC
Q 019107 248 INCTSP----RFIHGLILSVRKVTSKPVIIYPNS 277 (346)
Q Consensus 248 vNC~~p----~~~~~~l~~l~~~~~~pl~vypN~ 277 (346)
+|=.+. +.+..+++.++++ +.|+++.++.
T Consensus 96 INsIs~~~~~e~~~~~~~~~~~~-~~~vV~m~~~ 128 (252)
T cd00740 96 VNSINLEDGEERFLKVARLAKEH-GAAVVVLAFD 128 (252)
T ss_pred EEeCCCCCCccccHHHHHHHHHh-CCCEEEeccC
Confidence 555432 2355555544443 6788888863
No 451
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=34.90 E-value=2.5e+02 Score=27.16 Aligned_cols=56 Identities=9% Similarity=0.098 Sum_probs=36.7
Q ss_pred CCCCEEEEccC--------CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECC
Q 019107 180 SGADLIAFETI--------PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (346)
Q Consensus 180 ~gvD~i~~ET~--------~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC 250 (346)
+|+|+|++..| .++++++.+++.++. ..| +..+ .|-++..+.+++. .+++.|-+-.
T Consensus 228 agaDiImLDnm~~~~~~~~~~~e~l~~av~~~~~---~~~--lEaS--------GGIt~~ni~~yA~--tGVD~Is~Ga 291 (308)
T PLN02716 228 TSLTRVMLDNMVVPLENGDVDVSMLKEAVELING---RFE--TEAS--------GNVTLDTVHKIGQ--TGVTYISSGA 291 (308)
T ss_pred CCCCEEEeCCCcccccccCCCHHHHHHHHHhhCC---Cce--EEEE--------CCCCHHHHHHHHH--cCCCEEEeCc
Confidence 88999999988 377777777775542 222 3331 4667777776653 4777776655
No 452
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=34.45 E-value=3.7e+02 Score=24.72 Aligned_cols=104 Identities=13% Similarity=0.168 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEc---cCCCHH------HHHHHH----HH-----------------------HH
Q 019107 161 VSLETLKEFHRRRVLILANSGADLIAFE---TIPNKL------EAKAYA----EL-----------------------LE 204 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~~gvD~i~~E---T~~~~~------E~~a~~----~a-----------------------~~ 204 (346)
++.+.+...-+..|+.|.+.|+|+|++- .||.+. |-..++ .+ .+
T Consensus 67 ls~~~v~~~lq~~i~~le~~G~d~illlCTG~F~~l~~~~~lleP~ril~~lV~al~~~~~vGVivP~~eQ~~~~~~kW~ 146 (221)
T PF07302_consen 67 LSKKKVEPRLQACIAQLEAQGYDVILLLCTGEFPGLTARNPLLEPDRILPPLVAALVGGHQVGVIVPLPEQIAQQAEKWQ 146 (221)
T ss_pred EEHHHHHHHHHHHHHHHHHCCCCEEEEeccCCCCCCCCCcceeehHHhHHHHHHHhcCCCeEEEEecCHHHHHHHHHHHH
Confidence 5788888888889999999999999753 233222 111111 11 11
Q ss_pred HhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCCh-hhHHHHHHHHhhhcCCcEEE
Q 019107 205 EEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSP-RFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 205 ~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~p-~~~~~~l~~l~~~~~~pl~v 273 (346)
..+ ..|+++..+... .+-+.+.+|++.+.. .+++.|-+.|.+. ..+...+++. +++|+++
T Consensus 147 ~l~-~~~~~a~asPy~----~~~~~l~~Aa~~L~~-~gadlIvLDCmGYt~~~r~~~~~~---~g~PVlL 207 (221)
T PF07302_consen 147 PLG-NPVVVAAASPYE----GDEEELAAAARELAE-QGADLIVLDCMGYTQEMRDIVQRA---LGKPVLL 207 (221)
T ss_pred hcC-CCeEEEEeCCCC----CCHHHHHHHHHHHHh-cCCCEEEEECCCCCHHHHHHHHHH---hCCCEEe
Confidence 112 234444443221 123466777777765 4789999999975 5566666554 5788754
No 453
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=34.35 E-value=2.4e+02 Score=25.98 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEE-----EEccCCCHHHHHHHHHHHHHhCCCCcEEEEEE
Q 019107 162 SLETLKEFHRRRVLILANSGADLI-----AFETIPNKLEAKAYAELLEEEGITIPAWFSFN 217 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~~~gvD~i-----~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~ 217 (346)
+.+|+.. +++.+...++|++ .|+. .+..+...+.+.+++. ++|+++++.
T Consensus 31 ~~ee~~~----~~~~~~~~~aDivE~RlD~l~~-~~~~~~~~~~~~l~~~--~~p~I~T~R 84 (229)
T PRK01261 31 DIKEMKE----RFKTKVLSDKNLYEIRFDLFHD-HSIESEPEIISALNEM--DIDYIFTYR 84 (229)
T ss_pred CHHHHHH----HHHHhhcCCCCEEEEEeeccCC-CChHHHHHHHHHHhhc--CCCEEEEEc
Confidence 5677655 4455666788886 3444 4555666666667664 489999886
No 454
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=34.23 E-value=5.6e+02 Score=26.70 Aligned_cols=139 Identities=13% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHhhcceeeccccccCHHhHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCcEEEEecCCcc
Q 019107 65 LDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYG 144 (346)
Q Consensus 65 l~AGA~iI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g 144 (346)
+.+|.++|....=....+.....+.+.++..+....+|+.|++. ...|..+.--+.
T Consensus 91 ~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~------------------------g~~V~~~~e~f~ 146 (526)
T TIGR00977 91 IKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQ------------------------GDEVIYDAEHFF 146 (526)
T ss_pred hcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc------------------------CCeEEEEeeeee
Q ss_pred CCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcc---CCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCC
Q 019107 145 AYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFET---IPNKLEAKAYAELLEEEGITIPAWFSFNSKDG 221 (346)
Q Consensus 145 ~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET---~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~ 221 (346)
+ .|+-+. ++..+.++.+.++|+|-|.+=. +..+.+...+++.+++.- ....++|.|.++
T Consensus 147 D------~~r~~~----------~~l~~~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~~--~~~~i~vH~HND 208 (526)
T TIGR00977 147 D------GYKANP----------EYALATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRSL--KQPQLGIHAHND 208 (526)
T ss_pred e------cccCCH----------HHHHHHHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHhC--CCCEEEEEECCC
Q ss_pred CcccCCCCHHHHHHHhhcCCCceEEEEC
Q 019107 222 INVVSGDSILECASIADSCEQVVAVGIN 249 (346)
Q Consensus 222 ~~l~~G~~~~~av~~~~~~~~~~avGvN 249 (346)
. |..++.++..+.+.....=.-+|
T Consensus 209 ~----GlAvANslaAv~AGA~~Vd~Tin 232 (526)
T TIGR00977 209 S----GTAVANSLLAVEAGATMVQGTIN 232 (526)
T ss_pred C----ChHHHHHHHHHHhCCCEEEEecc
No 455
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties
Probab=34.01 E-value=3.1e+02 Score=26.97 Aligned_cols=66 Identities=9% Similarity=0.015 Sum_probs=40.7
Q ss_pred CCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCC-HH---HHHHHhhcCCCceEEEECCC
Q 019107 181 GADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDS-IL---ECASIADSCEQVVAVGINCT 251 (346)
Q Consensus 181 gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~-~~---~av~~~~~~~~~~avGvNC~ 251 (346)
++++.+ .+.+.++++.+-+++++.+ +++.|.+-++. +..+.|-. .. +.++.+....++.-.|+-|-
T Consensus 98 ~~~i~~--~vds~~~l~~L~~~a~~~g--~~~~v~i~vn~-g~~R~G~~~~~~~~~l~~~i~~~~~l~l~Gi~~~ 167 (382)
T cd06818 98 DFEFFC--LVDSVDNVRALAAFFAALE--RPLNVLIELGV-PGGRTGVRTEAEALALADAIAASPALRLAGVEGY 167 (382)
T ss_pred CCCEEE--EECCHHHHHHHHHHHHhcC--CceEEEEEECC-CCCCCCCCCHHHHHHHHHHHHcCCCceEeEEEee
Confidence 455432 5678888888877777655 55555555553 34456653 33 34444444457788999995
No 456
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=33.99 E-value=3.6e+02 Score=24.44 Aligned_cols=92 Identities=17% Similarity=0.169 Sum_probs=49.0
Q ss_pred hCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCC----c-------ccCCCCHHHHHHHhhcCCCceEEE
Q 019107 179 NSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGI----N-------VVSGDSILECASIADSCEQVVAVG 247 (346)
Q Consensus 179 ~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~----~-------l~~G~~~~~av~~~~~~~~~~avG 247 (346)
+.|+|.+++-+. .+.+-..+.++.++.+ +-.+.+++.++.+. + ..+..+..+.+..+.+ .+++.+-
T Consensus 91 ~~G~~~v~ig~~-~~~~p~~~~~i~~~~~-~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~-~G~d~i~ 167 (243)
T cd04731 91 RAGADKVSINSA-AVENPELIREIAKRFG-SQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEE-LGAGEIL 167 (243)
T ss_pred HcCCceEEECch-hhhChHHHHHHHHHcC-CCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHH-CCCCEEE
Confidence 368998887652 2222233444445544 22477788765221 1 1123445556666654 4677766
Q ss_pred ECCCC-----hhhHHHHHHHHhhhcCCcEEE
Q 019107 248 INCTS-----PRFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 248 vNC~~-----p~~~~~~l~~l~~~~~~pl~v 273 (346)
+-... ...-..+++.+.+..+.|+++
T Consensus 168 v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia 198 (243)
T cd04731 168 LTSMDRDGTKKGYDLELIRAVSSAVNIPVIA 198 (243)
T ss_pred EeccCCCCCCCCCCHHHHHHHHhhCCCCEEE
Confidence 64432 122346677777666788654
No 457
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=33.97 E-value=5.1e+02 Score=26.18 Aligned_cols=178 Identities=15% Similarity=0.074 Sum_probs=91.2
Q ss_pred ChHHHHHHHHHHHHhhcceeeccccc-----cCHHhHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCC
Q 019107 53 SPHLVRKVHLDYLDAGANIIITASYQ-----ATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSG 127 (346)
Q Consensus 53 ~Pe~V~~iH~~yl~AGA~iI~TnTy~-----as~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~ 127 (346)
+++.|++. -.=...|.+-+-.|||+ -...++.....+. +++=+.|+++.+++++... +
T Consensus 99 D~~elk~~-A~e~GL~lda~Npn~Fs~~~~q~~~yk~GSLtnPD---~~VR~~AIeh~~~~i~Ig~-e------------ 161 (412)
T TIGR02629 99 DPKELKAR-GSALGLGFDAMNSNTFSDAPGQAHSYKFGSLSHTD---AATRRQAVEHNLECIEIGK-A------------ 161 (412)
T ss_pred CHHHHHHH-HHHcCCccceeccccccCcccccccccccccCCCC---HHHHHHHHHHHHHHHHHHH-H------------
Confidence 77777732 12223466777888893 3333443332232 2455667777777765421 1
Q ss_pred CCCCCCcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCC-E-EEEccCC--------CHHHHH
Q 019107 128 RISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGAD-L-IAFETIP--------NKLEAK 197 (346)
Q Consensus 128 ~~~~~~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD-~-i~~ET~~--------~~~E~~ 197 (346)
.+.+. | --|++||..|.++- ++.+..+.+.+-++.+.+.-.| . +.+|.=| .+.|.-
T Consensus 162 --lGs~~-v-------~IW~gDG~~yP~Q~----~~~~~~~rl~esL~eI~~~~pd~~k~~iEyKpfEP~~ys~~v~d~g 227 (412)
T TIGR02629 162 --LGSKA-L-------TVWIGDGSNFPGQS----NFTRAFERYLDAMKAVYAGLPDDWKLFTEHKMYEPAFYSTVVQDWG 227 (412)
T ss_pred --hCCCe-e-------EEECCCCCCCcCcc----chHHHHHHHHHHHHHHHhhCCccceEEEecccCCCceeeeechHHH
Confidence 11121 1 23677888887652 4444444444444444443333 2 2233211 113433
Q ss_pred HHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECC------------CChhhHHHHHHHHhh
Q 019107 198 AYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC------------TSPRFIHGLILSVRK 265 (346)
Q Consensus 198 a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC------------~~p~~~~~~l~~l~~ 265 (346)
....++++.| .+.++. -|.++-..+++++.++..+.......++=+|= ++|..+..++..+.+
T Consensus 228 ~~yl~~~~lg--~~~~vl---LD~GH~~P~~nie~ivs~ll~~gkL~GfHfNd~~ygDDdL~vGSv~p~qlf~i~~el~~ 302 (412)
T TIGR02629 228 TNYLIAQELG--PKAFCL---VDLGHHAPNVNIEMIVARLIQFKKLGGFHFNDSKYGDDDLDAGSIDPYRLFLVFNELVD 302 (412)
T ss_pred HHHHHHHHhC--CCcEEE---eecCCCCcccCHHHHHHHHHhhCCcceeecCCCCcccCCcceecCCHHHHHHHHHHHHH
Confidence 3444455655 333333 35576678999999887653322334444554 457666666666655
Q ss_pred h
Q 019107 266 V 266 (346)
Q Consensus 266 ~ 266 (346)
.
T Consensus 303 ~ 303 (412)
T TIGR02629 303 A 303 (412)
T ss_pred h
Confidence 4
No 458
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=33.90 E-value=65 Score=30.18 Aligned_cols=65 Identities=15% Similarity=0.181 Sum_probs=0.0
Q ss_pred EEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeE--EeecCC-------CchHHHHHHHHHHcCCCCC-Cc
Q 019107 271 VIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASL--FGGCCR-------TTPNTIKAISRVLSNKSLP-SA 340 (346)
Q Consensus 271 l~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~i--vGGCCG-------t~P~hI~al~~~~~~~~~~-~~ 340 (346)
|-+-|+++ ||+ +..++.+...+.+.+.++.||.+ ||||-. ...++++.|...++..... ..
T Consensus 7 lN~tpdSF--~dg-------~~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~ 77 (257)
T cd00739 7 LNVTPDSF--SDG-------GRFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDV 77 (257)
T ss_pred EcCCCCCC--CCC-------CCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q ss_pred cccc
Q 019107 341 NLNI 344 (346)
Q Consensus 341 ~~~~ 344 (346)
+|+|
T Consensus 78 plSI 81 (257)
T cd00739 78 LISV 81 (257)
T ss_pred cEEE
No 459
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=33.43 E-value=2.5e+02 Score=26.69 Aligned_cols=27 Identities=15% Similarity=0.057 Sum_probs=19.4
Q ss_pred ccCCCCHHHHHHHhhcCCCceEEEECCCC
Q 019107 224 VVSGDSILECASIADSCEQVVAVGINCTS 252 (346)
Q Consensus 224 l~~G~~~~~av~~~~~~~~~~avGvNC~~ 252 (346)
|.+|.+++.+.+.++ .+...|++-+++
T Consensus 76 LDH~~~~~~i~~ai~--~GftSVMiD~S~ 102 (276)
T cd00947 76 LDHGSSFELIKRAIR--AGFSSVMIDGSH 102 (276)
T ss_pred CCCCCCHHHHHHHHH--hCCCEEEeCCCC
Confidence 347777777777665 367888888875
No 460
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=33.42 E-value=5.5e+02 Score=26.46 Aligned_cols=64 Identities=11% Similarity=0.076 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCCCEEEEccC-CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEE
Q 019107 171 RRRVLILANSGADLIAFETI-PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAV 246 (346)
Q Consensus 171 ~~~i~~l~~~gvD~i~~ET~-~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~av 246 (346)
.++++.|.++|+|+|.+-+- .+-......++.+++.-.++|+++ + +..+.+++...++ .++++|
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~a-------G---~V~t~~~a~~~~~--aGad~I 307 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIA-------G---NVVTADQAKNLID--AGADGL 307 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEE-------C---CcCCHHHHHHHHH--cCCCEE
Confidence 46788999999999998652 122223345555665422577775 2 2345566665554 356665
No 461
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=33.39 E-value=2.8e+02 Score=27.69 Aligned_cols=27 Identities=11% Similarity=0.069 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhhcceeeccccccCH
Q 019107 55 HLVRKVHLDYLDAGANIIITASYQATI 81 (346)
Q Consensus 55 e~V~~iH~~yl~AGA~iI~TnTy~as~ 81 (346)
+++.++++-|.+-.|..+..|-...+.
T Consensus 179 ~~~~~l~~~f~~~d~~l~EINPl~~~~ 205 (392)
T PRK14046 179 KTIMGCYRAFRDLDATMLEINPLVVTK 205 (392)
T ss_pred HHHHHHHHHHHhcCcEEEEEEcceEcC
Confidence 578889999999999999988765443
No 462
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=33.27 E-value=98 Score=29.35 Aligned_cols=67 Identities=21% Similarity=0.262 Sum_probs=43.3
Q ss_pred HHHHHHHHhCCCCEEEEccCCC-----HHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCC---CHHHHHHHhhcCCC
Q 019107 171 RRRVLILANSGADLIAFETIPN-----KLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGD---SILECASIADSCEQ 242 (346)
Q Consensus 171 ~~~i~~l~~~gvD~i~~ET~~~-----~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~---~~~~av~~~~~~~~ 242 (346)
.+.++.|.+.|||++=+| +|- -.|+.++.+-+... .++|+++-- .|. .|.+.++.... .+
T Consensus 189 ~~a~k~fsd~GadvlKve-vPvyveGe~~ea~~~f~~~~~~-~~lP~i~LS---------AGV~~klF~~tv~fA~e-aG 256 (306)
T COG3684 189 IEAMKEFSDSGADVLKVE-VPVYVEGEQEEAAAAFQRQNDH-INLPWIYLS---------AGVSAKLFQRTVRFAME-AG 256 (306)
T ss_pred HHHHHHhccCCCceEEee-cceeccCccHHHHHHHHHhhcC-CCCCeEEEe---------cCccHHHhHHHHHHHHH-cC
Confidence 445777889999999999 576 67777776665554 368977432 343 34556665433 34
Q ss_pred ceEEEECCC
Q 019107 243 VVAVGINCT 251 (346)
Q Consensus 243 ~~avGvNC~ 251 (346)
+ =||=|.
T Consensus 257 A--sGvL~G 263 (306)
T COG3684 257 A--SGVLAG 263 (306)
T ss_pred C--ceeEec
Confidence 4 566675
No 463
>PRK05398 formyl-coenzyme A transferase; Provisional
Probab=33.23 E-value=1.6e+02 Score=29.55 Aligned_cols=39 Identities=15% Similarity=0.282 Sum_probs=24.5
Q ss_pred CCChHHHHHHHHHHHHhhcceeeccccccCHHhHHhCCCCHHHH
Q 019107 51 VSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEA 94 (346)
Q Consensus 51 l~~Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~~g~~~~~~ 94 (346)
+++|+-...+++ |-+.|||+++| |+ +..+.+.|++.+.+
T Consensus 74 Lk~~eGr~~l~~--Lv~~ADVvien-~r--pg~~~rlGl~~e~L 112 (416)
T PRK05398 74 TKTPEGKEVLEK--LIREADVLVEN-FG--PGALDRMGFTWERI 112 (416)
T ss_pred CCCHHHHHHHHH--HHhcCCEEEEC-CC--cchHHHcCCCHHHH
Confidence 345654333332 23569999998 66 55678889986543
No 464
>PTZ00413 lipoate synthase; Provisional
Probab=33.20 E-value=5.1e+02 Score=26.03 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=12.1
Q ss_pred CCCchHHHHHHHHHHcCCCC
Q 019107 318 CRTTPNTIKAISRVLSNKSL 337 (346)
Q Consensus 318 CGt~P~hI~al~~~~~~~~~ 337 (346)
=|=|.+++.++...+.....
T Consensus 305 LGET~eEvie~m~dLrelGV 324 (398)
T PTZ00413 305 LGETEEEVRQTLRDLRTAGV 324 (398)
T ss_pred CCCCHHHHHHHHHHHHHcCC
Confidence 45666666666666655444
No 465
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=33.16 E-value=5.3e+02 Score=26.11 Aligned_cols=102 Identities=13% Similarity=0.187 Sum_probs=66.3
Q ss_pred CChHHHHHHHHHHHHhhcceeecccc-ccCHHhHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCC
Q 019107 52 SSPHLVRKVHLDYLDAGANIIITASY-QATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRIS 130 (346)
Q Consensus 52 ~~Pe~V~~iH~~yl~AGA~iI~TnTy-~as~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~ 130 (346)
-||-.|+..-+.=.+-|..+++-.|= |.|..+-- .|+.+.+....+.. +|.+.- ..
T Consensus 21 ahp~VieAAl~~a~~~~~pvLiEAT~NQVnq~GGY-TGmtP~dF~~~V~~---iA~~~g-------------------f~ 77 (420)
T TIGR02810 21 AHPLVLEAAIRRARASGTPVLIEATSNQVNQFGGY-TGMTPADFRDFVET---IADRIG-------------------FP 77 (420)
T ss_pred CCHHHHHHHHHHHhhcCCcEEEEeccccccccCCc-CCCCHHHHHHHHHH---HHHHcC-------------------CC
Confidence 48888888777777778888887775 55544211 47776555443332 333321 12
Q ss_pred CCCcEEEEe-cCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEcc
Q 019107 131 SRPVLVAAS-VGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFET 189 (346)
Q Consensus 131 ~~~~~VaGs-iGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET 189 (346)
..++++.|. +||-. + ++++.+++.+.-++.++..+++|.+.|-+-+
T Consensus 78 ~~~iiLggDHlGPn~------------W-q~lpa~eAM~~A~~li~ayV~AGF~kIHLD~ 124 (420)
T TIGR02810 78 RDRLILGGDHLGPNP------------W-QHLPADEAMAKAAALVDAYVEAGFTKIHLDA 124 (420)
T ss_pred hhcEEeecCCCCCcc------------c-cCCCHHHHHHHHHHHHHHHHHcCCceEEecC
Confidence 224555554 55521 2 3478899999899999999999999998874
No 466
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=33.07 E-value=4.9e+02 Score=25.68 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=23.3
Q ss_pred cCCChHHHHHHHHHHHHhhcceeeccccc
Q 019107 50 LVSSPHLVRKVHLDYLDAGANIIITASYQ 78 (346)
Q Consensus 50 ll~~Pe~V~~iH~~yl~AGA~iI~TnTy~ 78 (346)
.++.++.+.++=+.--++|+.++.-..|.
T Consensus 127 ~iE~~~~~~~~A~~lk~~g~~~~r~~~~k 155 (360)
T PRK12595 127 SVESYEQVEAVAKALKAKGLKLLRGGAFK 155 (360)
T ss_pred cccCHHHHHHHHHHHHHcCCcEEEccccC
Confidence 36788888888777788999999887774
No 467
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=33.04 E-value=3.4e+02 Score=26.43 Aligned_cols=102 Identities=10% Similarity=0.029 Sum_probs=0.0
Q ss_pred CCHHHHHHHhhcCCCceEEEECCCChhh---------HHHHHHHHhhhcCCcEEEeeC-----CCCccccccccccccCC
Q 019107 228 DSILECASIADSCEQVVAVGINCTSPRF---------IHGLILSVRKVTSKPVIIYPN-----SGETYNAELKKWVESTG 293 (346)
Q Consensus 228 ~~~~~av~~~~~~~~~~avGvNC~~p~~---------~~~~l~~l~~~~~~pl~vypN-----~g~~~~~~~~~~~~~~~ 293 (346)
.++.+.+..+....+++.|=||+.+.+. +..+++.+.+..+.||++--. ...+...-.......+.
T Consensus 75 ~~p~~~Ak~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~p 154 (319)
T PRK04452 75 NDPAAWAKKCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERC 154 (319)
T ss_pred cCHHHHHHHHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCC
Q ss_pred ----CChHHHHHHHHHHHHcCCeEEeecCCCchHHHHHHHHHHc
Q 019107 294 ----VRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLS 333 (346)
Q Consensus 294 ----~~~~~~~~~~~~~~~~G~~ivGGCCGt~P~hI~al~~~~~ 333 (346)
.+.+.|.+.+.-..+.|+.+|+-| |.+|..+.+...
T Consensus 155 LInSat~en~~~i~~lA~~y~~~Vva~s----~~Dln~ak~L~~ 194 (319)
T PRK04452 155 LLGSAEEDNYKKIAAAAMAYGHAVIAWS----PLDINLAKQLNI 194 (319)
T ss_pred EEEECCHHHHHHHHHHHHHhCCeEEEEc----HHHHHHHHHHHH
No 468
>PRK06801 hypothetical protein; Provisional
Probab=33.04 E-value=2.7e+02 Score=26.61 Aligned_cols=71 Identities=14% Similarity=0.066 Sum_probs=44.0
Q ss_pred HHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCC------------------------CcccCCCCHHH
Q 019107 177 LANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDG------------------------INVVSGDSILE 232 (346)
Q Consensus 177 l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~------------------------~~l~~G~~~~~ 232 (346)
..+.+.=+-.|.+ .+++-++++++++.+.+ .|+++.++-... -+|.+|.+++.
T Consensus 13 A~~~~yaV~Afn~-~n~e~~~avi~AAe~~~--~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~ 89 (286)
T PRK06801 13 ARKHGYALGAFNV-LDSHFLRALFAAAKQER--SPFIINIAEVHFKYISLESLVEAVKFEAARHDIPVVLNLDHGLHFEA 89 (286)
T ss_pred HHHCCceEEEEee-CCHHHHHHHHHHHHHHC--CCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHH
Confidence 3344555555554 37777777777777754 777777753210 13557777766
Q ss_pred HHHHhhcCCCceEEEECCCC
Q 019107 233 CASIADSCEQVVAVGINCTS 252 (346)
Q Consensus 233 av~~~~~~~~~~avGvNC~~ 252 (346)
+.+.++ .|+..|++-.++
T Consensus 90 i~~Ai~--~GftSVm~D~S~ 107 (286)
T PRK06801 90 VVRALR--LGFSSVMFDGST 107 (286)
T ss_pred HHHHHH--hCCcEEEEcCCC
Confidence 666664 367888888874
No 469
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=32.99 E-value=4.5e+02 Score=25.24 Aligned_cols=24 Identities=21% Similarity=0.045 Sum_probs=13.1
Q ss_pred hhhHHHHHHHHhhhcCCcEEEeeCCC
Q 019107 253 PRFIHGLILSVRKVTSKPVIIYPNSG 278 (346)
Q Consensus 253 p~~~~~~l~~l~~~~~~pl~vypN~g 278 (346)
+..+..+.+.+++. .-+++=||++
T Consensus 102 ~~D~~~~~~~a~~~--g~~iiGPncp 125 (293)
T COG0074 102 VLDMLELKRYAREK--GTRLIGPNCP 125 (293)
T ss_pred HHHHHHHHHHHHhc--CCEEECCCCC
Confidence 45555665555432 3456667764
No 470
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=32.85 E-value=2.4e+02 Score=27.58 Aligned_cols=90 Identities=12% Similarity=0.128 Sum_probs=49.3
Q ss_pred HHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCc--eEEEECCC
Q 019107 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQV--VAVGINCT 251 (346)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~--~avGvNC~ 251 (346)
++.+.+-|||++=+-+. ++.. ...++.+.+++ +|+++|--. .+=+.+..+++.+...... ..+.+-|+
T Consensus 102 vd~l~~~~v~~~KIaS~-~~~n-~pLL~~~A~~g--kPvilStGm------atl~Ei~~Av~~i~~~G~~~~~i~llhC~ 171 (329)
T TIGR03569 102 ADFLEDLGVPRFKIPSG-EITN-APLLKKIARFG--KPVILSTGM------ATLEEIEAAVGVLRDAGTPDSNITLLHCT 171 (329)
T ss_pred HHHHHhcCCCEEEECcc-cccC-HHHHHHHHhcC--CcEEEECCC------CCHHHHHHHHHHHHHcCCCcCcEEEEEEC
Confidence 34444556676654432 2222 22444555555 999988621 1223455677766543222 36777897
Q ss_pred C--h----hhHHHHHHHHhhhcCCcEEE
Q 019107 252 S--P----RFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 252 ~--p----~~~~~~l~~l~~~~~~pl~v 273 (346)
+ | +.=+..+..|++....|++.
T Consensus 172 s~YP~~~~~~nL~~I~~Lk~~f~~pVG~ 199 (329)
T TIGR03569 172 TEYPAPFEDVNLNAMDTLKEAFDLPVGY 199 (329)
T ss_pred CCCCCCcccCCHHHHHHHHHHhCCCEEE
Confidence 4 2 22356677777767788874
No 471
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=32.76 E-value=2.4e+02 Score=30.67 Aligned_cols=65 Identities=28% Similarity=0.501 Sum_probs=40.8
Q ss_pred CCceEEEECCCC---------h-----------------hhHHHHHHHHhhhc--CCcEEEeeCCCCccccccccccccC
Q 019107 241 EQVVAVGINCTS---------P-----------------RFIHGLILSVRKVT--SKPVIIYPNSGETYNAELKKWVEST 292 (346)
Q Consensus 241 ~~~~avGvNC~~---------p-----------------~~~~~~l~~l~~~~--~~pl~vypN~g~~~~~~~~~~~~~~ 292 (346)
.+.++|-|||.+ | ..+..+++.+++.. +.|+.+.-|... |.+.
T Consensus 563 aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~--------~~~~- 633 (765)
T PRK08255 563 AGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHD--------WVEG- 633 (765)
T ss_pred cCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEcccc--------ccCC-
Confidence 589999999983 3 12345555666653 468888877632 2221
Q ss_pred CCChHHHHHHHHHHHHcCCeEE
Q 019107 293 GVRDEDFVSYIGKWRDAGASLF 314 (346)
Q Consensus 293 ~~~~~~~~~~~~~~~~~G~~iv 314 (346)
..++++..++++.+.+.|+.+|
T Consensus 634 g~~~~~~~~~~~~l~~~g~d~i 655 (765)
T PRK08255 634 GNTPDDAVEIARAFKAAGADLI 655 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCcEE
Confidence 2456777777777777775554
No 472
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=32.69 E-value=7e+02 Score=27.38 Aligned_cols=164 Identities=9% Similarity=0.017 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcceeeccccccCHHhHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCc
Q 019107 55 HLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPV 134 (346)
Q Consensus 55 e~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (346)
.++++--++..+||+++|+-.-=.. +..+...+.+.++..+..-.+++++.+.+. ....+
T Consensus 586 ~alr~Ev~~L~~aG~~~IQIDEPal-~e~~~~~~~~~~~~l~~av~af~~~~~~v~-------------------~~~~I 645 (766)
T PLN02475 586 LAIKDEVEDLEKAGITVIQIDEAAL-REGLPLRKSEHAFYLDWAVHSFRITNCGVQ-------------------DTTQI 645 (766)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCcch-hhcCCcCccCHHHHHHHHHHHHHHHHhcCC-------------------CCCEE
Q ss_pred EEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHH-hCCCCcEE
Q 019107 135 LVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEE-EGITIPAW 213 (346)
Q Consensus 135 ~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~-~~~~~pv~ 213 (346)
.+--|-|.+.. .+..+.+..||.|.+|+--+-.+ .++.+++ .+.++.+.
T Consensus 646 ~~H~C~gnf~~---------------------------I~~~i~~l~~D~~~~E~~rs~~~---~l~~l~~~~~~~~~Ig 695 (766)
T PLN02475 646 HTHMCYSNFND---------------------------IIHSIIDMDADVITIENSRSDEK---LLSVFREGVKYGAGIG 695 (766)
T ss_pred EEEEecCCcHH---------------------------HHHHHHhCCCCEEEEEcCCCChh---hhHHHHhhcCCCCeEE
Q ss_pred EEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECC-CC-----hhhHHHHHHHHhhhcC
Q 019107 214 FSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC-TS-----PRFIHGLILSVRKVTS 268 (346)
Q Consensus 214 is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC-~~-----p~~~~~~l~~l~~~~~ 268 (346)
.-+.--...++.+-+.+.+.++.+.+.-++.=+.+|. |+ .+.+.+.|+.|-++++
T Consensus 696 lGViD~~s~~ves~Eei~~rI~~a~~~v~~e~l~vnPDCGl~tr~~~~~~~kL~~mv~aa~ 756 (766)
T PLN02475 696 PGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYPEVKPALKNMVAAAK 756 (766)
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHHhCCcceEEEcCCCCcccCCHHHHHHHHHHHHHHHH
No 473
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=32.62 E-value=4.1e+02 Score=24.67 Aligned_cols=53 Identities=25% Similarity=0.293 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEE
Q 019107 162 SLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNS 218 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~ 218 (346)
+.++-.+..++.+ ++|+|+++=--+.+.+.....++.+++.+.++|+++.+..
T Consensus 145 ~~~~~~~~L~~Ki----~aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi~vPIi~GI~p 197 (274)
T cd00537 145 SLEEDIKRLKRKV----DAGADFIITQLFFDNDAFLRFVDRCRAAGITVPIIPGIMP 197 (274)
T ss_pred CHHHHHHHHHHHH----HCCCCEEeecccccHHHHHHHHHHHHHcCCCCCEEeeccc
Confidence 3444444444443 3799999977778888888888888888777999999864
No 474
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=32.30 E-value=2.7e+02 Score=26.40 Aligned_cols=36 Identities=28% Similarity=0.238 Sum_probs=18.9
Q ss_pred hCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEE
Q 019107 179 NSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFN 217 (346)
Q Consensus 179 ~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~ 217 (346)
+.+-=+-+|.+ .+++-++++++++.+.+ .|+++.++
T Consensus 13 ~~~yav~Afn~-~n~e~~~avi~aAe~~~--~PvIl~~~ 48 (282)
T TIGR01859 13 KEGYAVGAFNF-NNLEWTQAILEAAEEEN--SPVIIQVS 48 (282)
T ss_pred HCCceEEEEEE-CCHHHHHHHHHHHHHhC--CCEEEEcC
Confidence 34443344443 35555666666666543 66666553
No 475
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=32.22 E-value=4.3e+02 Score=24.73 Aligned_cols=100 Identities=15% Similarity=0.077 Sum_probs=55.1
Q ss_pred HHHHHHhCCCCEEEEccCC---------------CHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHh
Q 019107 173 RVLILANSGADLIAFETIP---------------NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIA 237 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~~---------------~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~ 237 (346)
-++.+.+.|+|.+.+-.=. .++.++.+++.+++.| +.+.++...-.++.-.+-+-+.+.++.+
T Consensus 83 ~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G--~~v~~~~~~~~d~~~~~~~~~~~~~~~~ 160 (273)
T cd07941 83 NLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHG--REVIFDAEHFFDGYKANPEYALATLKAA 160 (273)
T ss_pred HHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC--CeEEEeEEeccccCCCCHHHHHHHHHHH
Confidence 3556778899988763221 2334556677777776 5555432211111111112223444444
Q ss_pred hcCCCceEEEECC----CChhhHHHHHHHHhhhcC-CcEEEee
Q 019107 238 DSCEQVVAVGINC----TSPRFIHGLILSVRKVTS-KPVIIYP 275 (346)
Q Consensus 238 ~~~~~~~avGvNC----~~p~~~~~~l~~l~~~~~-~pl~vyp 275 (346)
.+ .+++.|.+-= ..|+.+..+++.+++... .|+.+..
T Consensus 161 ~~-~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~ 202 (273)
T cd07941 161 AE-AGADWLVLCDTNGGTLPHEIAEIVKEVRERLPGVPLGIHA 202 (273)
T ss_pred Hh-CCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCCeeEEEe
Confidence 33 3566554432 249999999999987654 6776654
No 476
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=32.08 E-value=5e+02 Score=25.50 Aligned_cols=112 Identities=10% Similarity=0.011 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEE--------EEccCCC-----------------HHHHHHHHHHHHHhCCCCcEEEEE
Q 019107 162 SLETLKEFHRRRVLILANSGADLI--------AFETIPN-----------------KLEAKAYAELLEEEGITIPAWFSF 216 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~~~gvD~i--------~~ET~~~-----------------~~E~~a~~~a~~~~~~~~pv~is~ 216 (346)
+.+++.+.|...++...++|.|.+ ++..|-+ ..=+..+++++++.-..-++.+-+
T Consensus 153 eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRi 232 (362)
T PRK10605 153 EIPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRI 232 (362)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Q ss_pred EEcCCCc-ccCCCCHHH-HHHHhhc--CCCceEEEECC----CChhhHHHHHHHHhhhcCCcEEE
Q 019107 217 NSKDGIN-VVSGDSILE-CASIADS--CEQVVAVGINC----TSPRFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 217 ~~~~~~~-l~~G~~~~~-av~~~~~--~~~~~avGvNC----~~p~~~~~~l~~l~~~~~~pl~v 273 (346)
+..+... ...|.++.+ ++..+.. ..+++.|-|.+ ..+.....+.+.+++..+.|+++
T Consensus 233 s~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv~~ 297 (362)
T PRK10605 233 SPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFHGVIIG 297 (362)
T ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCCccccHHHHHHHHHHCCCCEEE
No 477
>PLN02321 2-isopropylmalate synthase
Probab=32.06 E-value=6.6e+02 Score=26.90 Aligned_cols=57 Identities=16% Similarity=0.106 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEc-cC--CCHHHHHHHHHHHHHhCCCC-cEEEEEEEcCCC
Q 019107 162 SLETLKEFHRRRVLILANSGADLIAFE-TI--PNKLEAKAYAELLEEEGITI-PAWFSFNSKDGI 222 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~~~gvD~i~~E-T~--~~~~E~~a~~~a~~~~~~~~-pv~is~~~~~~~ 222 (346)
+++.+. +.++.+.+.|+|.|.+- |+ ..+.|...+++.+++.-... ++++++.|.++.
T Consensus 238 d~d~l~----~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~ 298 (632)
T PLN02321 238 DPEFLY----RILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKANTPGIENVIISTHCQNDL 298 (632)
T ss_pred CHHHHH----HHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCC
Confidence 554444 45666777899998653 44 36779999998887742123 488999998764
No 478
>PRK07094 biotin synthase; Provisional
Probab=31.92 E-value=2.4e+02 Score=26.87 Aligned_cols=78 Identities=17% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCEEEE--ccC-----------CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHh
Q 019107 171 RRRVLILANSGADLIAF--ETI-----------PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIA 237 (346)
Q Consensus 171 ~~~i~~l~~~gvD~i~~--ET~-----------~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~ 237 (346)
.+.++.|.++|+|.+.+ ||. .+.++...+++.+++.| .++...|.+--.+... +++.+.+..+
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~G--i~v~~~~iiGlpget~--ed~~~~l~~l 204 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELG--YEVGSGFMVGLPGQTL--EDLADDILFL 204 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcC--CeecceEEEECCCCCH--HHHHHHHHHH
Q ss_pred hcCCCceEEEECCCCh
Q 019107 238 DSCEQVVAVGINCTSP 253 (346)
Q Consensus 238 ~~~~~~~avGvNC~~p 253 (346)
.+ .++..++++-..|
T Consensus 205 ~~-l~~~~v~~~~~~P 219 (323)
T PRK07094 205 KE-LDLDMIGIGPFIP 219 (323)
T ss_pred Hh-CCCCeeeeecccc
No 479
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=31.76 E-value=4.6e+02 Score=25.03 Aligned_cols=98 Identities=15% Similarity=0.083 Sum_probs=63.9
Q ss_pred HHHHHHhCCCCEEEEccCC----------------CHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHH
Q 019107 173 RVLILANSGADLIAFETIP----------------NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASI 236 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~ET~~----------------~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~ 236 (346)
-++.+.++||-.|-+|-.. +.+|...-++++++...+.+++|.-.. |..+ .+..+.++++.
T Consensus 95 tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ART--Da~~-~~~g~deAI~R 171 (290)
T TIGR02321 95 VVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARV--EALI-AGLGQQEAVRR 171 (290)
T ss_pred HHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEe--cccc-ccCCHHHHHHH
Confidence 5777888999999999741 445556666666664334567766543 3332 34556888887
Q ss_pred hhc--CCCceEEEECC--CChhhHHHHHHHHhhhcCCcEEEee
Q 019107 237 ADS--CEQVVAVGINC--TSPRFIHGLILSVRKVTSKPVIIYP 275 (346)
Q Consensus 237 ~~~--~~~~~avGvNC--~~p~~~~~~l~~l~~~~~~pl~vyp 275 (346)
+.. ..|+++|=+-+ ..++.+..+.+.+. ...|+++.|
T Consensus 172 a~aY~eAGAD~ifv~~~~~~~~ei~~~~~~~~--~p~pv~~~~ 212 (290)
T TIGR02321 172 GQAYEEAGADAILIHSRQKTPDEILAFVKSWP--GKVPLVLVP 212 (290)
T ss_pred HHHHHHcCCCEEEecCCCCCHHHHHHHHHhcC--CCCCeEEec
Confidence 643 25889998885 36777777777653 235776655
No 480
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=31.69 E-value=2.9e+02 Score=26.42 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=17.8
Q ss_pred ccCCCCHHHHHHHhhcCCCceEEEECCCC
Q 019107 224 VVSGDSILECASIADSCEQVVAVGINCTS 252 (346)
Q Consensus 224 l~~G~~~~~av~~~~~~~~~~avGvNC~~ 252 (346)
|.+|.+++.+.+.++ .+...|++-+++
T Consensus 84 LDHg~~~e~i~~ai~--~GftSVMiDgS~ 110 (288)
T TIGR00167 84 LDHGASEEDCAQAVK--AGFSSVMIDGSH 110 (288)
T ss_pred CCCCCCHHHHHHHHH--cCCCEEEecCCC
Confidence 346667766666664 356777788775
No 481
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=31.55 E-value=1.3e+02 Score=27.32 Aligned_cols=49 Identities=22% Similarity=0.361 Sum_probs=36.1
Q ss_pred CCHHHHHHHhhcCCCceEEEECCC---ChhhHHHHHHHHhhhcCCcEEEeeCC
Q 019107 228 DSILECASIADSCEQVVAVGINCT---SPRFIHGLILSVRKVTSKPVIIYPNS 277 (346)
Q Consensus 228 ~~~~~av~~~~~~~~~~avGvNC~---~p~~~~~~l~~l~~~~~~pl~vypN~ 277 (346)
+.+.+.+..+.. .+.++|.|--+ ..+.+..+++.+++..++|+++.|..
T Consensus 11 e~~~~ia~~v~~-~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvilfp~~ 62 (205)
T TIGR01769 11 DEIEKIAKNAKD-AGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVILFPGN 62 (205)
T ss_pred HHHHHHHHHHHh-cCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEEECCC
Confidence 445555555554 46788888754 46889999999998889999988854
No 482
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=31.51 E-value=3.3e+02 Score=26.09 Aligned_cols=76 Identities=24% Similarity=0.291 Sum_probs=49.8
Q ss_pred HHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcC----C---------------------CcccC
Q 019107 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKD----G---------------------INVVS 226 (346)
Q Consensus 172 ~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~----~---------------------~~l~~ 226 (346)
+.++...+.+.=+=.|. +.+++-++++++++++.. .||+|.++-.. . -+|.+
T Consensus 8 ~ll~~Ake~~yAvpAfN-~~nlE~~~AileaA~e~~--sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lHlDH 84 (286)
T COG0191 8 ELLDKAKENGYAVPAFN-INNLETLQAILEAAEEEK--SPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALHLDH 84 (286)
T ss_pred HHHHHHHHcCCceeeee-ecCHHHHHHHHHHHHHhC--CCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 34445555666666666 468889999999999865 89999996321 1 13456
Q ss_pred CCCHHHHHHHhhcCCCceEEEECCCC
Q 019107 227 GDSILECASIADSCEQVVAVGINCTS 252 (346)
Q Consensus 227 G~~~~~av~~~~~~~~~~avGvNC~~ 252 (346)
|.+++.+.+.++ .+..-+++--++
T Consensus 85 g~~~~~~~~ai~--~GFsSvMiDgS~ 108 (286)
T COG0191 85 GASFEDCKQAIR--AGFSSVMIDGSH 108 (286)
T ss_pred CCCHHHHHHHHh--cCCceEEecCCc
Confidence 666666666664 355666666663
No 483
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=31.33 E-value=3.3e+02 Score=27.62 Aligned_cols=100 Identities=16% Similarity=0.082 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEE-----EEc-cCCC-HHHHHHHHHHH----HHhCCCCcEEEEEEEcCCCcccCCCC
Q 019107 161 VSLETLKEFHRRRVLILANSGADLI-----AFE-TIPN-KLEAKAYAELL----EEEGITIPAWFSFNSKDGINVVSGDS 229 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~~gvD~i-----~~E-T~~~-~~E~~a~~~a~----~~~~~~~pv~is~~~~~~~~l~~G~~ 229 (346)
++.++..+ ++..+...|+|+| +.. .+.- .+.++++.+++ +++| .+.+-.+.+ +| +
T Consensus 173 Lsp~~~a~----~~y~~~~GGvD~IKDDE~l~~q~f~p~~eRv~~~~~ai~~a~~eTG--~~~~ya~Ni-------T~-~ 238 (424)
T cd08208 173 LPPGEFAE----LGYQSWLGGLDIAKDDEMLADVDWCPLEERAALLGKARRRAEAETG--VPKIYLANI-------TD-E 238 (424)
T ss_pred CCHHHHHH----HHHHHHcCCcccccccccccCCCCCCHHHHHHHHHHHHHHHHHhhC--CcceEEEEc-------cC-C
Confidence 46666655 4445666899987 222 1222 23444444544 4466 333434443 22 2
Q ss_pred HHHHHHH---hhcCCCceEEEECCCChhhHHHHHHHHhhhcCCcEEEeeCC
Q 019107 230 ILECASI---ADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNS 277 (346)
Q Consensus 230 ~~~av~~---~~~~~~~~avGvNC~~p~~~~~~l~~l~~~~~~pl~vypN~ 277 (346)
..+..+. +.. .+..++.+|-...- ...++.+++..+.||.+.|+.
T Consensus 239 ~~em~~ra~~a~~-~G~~~vmv~~~~~G--~~al~~L~~~~~l~ihaHra~ 286 (424)
T cd08208 239 VDRLMELHDVAVR-NGANALLINAMPVG--LSAVRMLRKHAQVPLIAHFPF 286 (424)
T ss_pred HHHHHHHHHHHHH-hCCCEEEEeeeccc--HHHHHHHHhcCCCeEEeccCc
Confidence 3444443 333 46677777774211 234555565667889888874
No 484
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=31.31 E-value=3e+02 Score=23.48 Aligned_cols=73 Identities=25% Similarity=0.270 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHH--H---HHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHH
Q 019107 162 SLETLKEFHRRRVLILANSGADLIAFETIPNKL--E---AKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASI 236 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~--E---~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~ 236 (346)
..+.+.+..++..+.+.+.|+. +.+|+.+... - +..+.+.+++.+ .|. +.++++.......|.++.+.++.
T Consensus 106 ~~~~~~~~l~~l~~~a~~~gv~-i~lE~~~~~~~~~~~~~~~~~~~l~~~~--~~~-~~i~~D~~h~~~~~~~~~~~i~~ 181 (213)
T PF01261_consen 106 NWERLAENLRELAEIAEEYGVR-IALENHPGPFSETPFSVEEIYRLLEEVD--SPN-VGICFDTGHLIMAGEDPDEAIKR 181 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSE-EEEE-SSSSSSSEESSHHHHHHHHHHHT--TTT-EEEEEEHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcce-EEEecccCccccchhhHHHHHHHHhhcC--CCc-ceEEEehHHHHHcCCCHHHHHHH
Confidence 3445555666666666667776 5558776442 0 133444444444 221 33433333333346666666665
Q ss_pred hh
Q 019107 237 AD 238 (346)
Q Consensus 237 ~~ 238 (346)
+.
T Consensus 182 ~~ 183 (213)
T PF01261_consen 182 LA 183 (213)
T ss_dssp HH
T ss_pred hh
Confidence 53
No 485
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=31.27 E-value=3.5e+02 Score=23.41 Aligned_cols=141 Identities=16% Similarity=0.179 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhCCCCEEEEcc-CCCHHHHHH----HHHHHHHhCCCCcEEEEEEEc-------CCCccc-CCCCHHHHHH
Q 019107 169 FHRRRVLILANSGADLIAFET-IPNKLEAKA----YAELLEEEGITIPAWFSFNSK-------DGINVV-SGDSILECAS 235 (346)
Q Consensus 169 ~~~~~i~~l~~~gvD~i~~ET-~~~~~E~~a----~~~a~~~~~~~~pv~is~~~~-------~~~~l~-~G~~~~~av~ 235 (346)
.+.++++.+.++|++++.+=. --+-.|... +.+..++. +.|++|.-.++ +.-++. ...++.++-.
T Consensus 13 ~~~~~l~~~~~~gv~~v~lR~k~~~~~~~~~~a~~l~~~~~~~--~~~liin~~~~la~~~~~dGvHl~~~~~~~~~~r~ 90 (180)
T PF02581_consen 13 DFLEQLEAALAAGVDLVQLREKDLSDEELLELARRLAELCQKY--GVPLIINDRVDLALELGADGVHLGQSDLPPAEARK 90 (180)
T ss_dssp HHHHHHHHHHHTT-SEEEEE-SSS-HHHHHHHHHHHHHHHHHT--TGCEEEES-HHHHHHCT-SEEEEBTTSSSHHHHHH
T ss_pred hHHHHHHHHHHCCCcEEEEcCCCCCccHHHHHHHHHHHHhhcc--eEEEEecCCHHHHHhcCCCEEEecccccchHHhhh
Confidence 356678888889999986543 223344333 34444554 48888875432 111332 2234555544
Q ss_pred HhhcCCCceEEEECCCChhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHH---cCCe
Q 019107 236 IADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRD---AGAS 312 (346)
Q Consensus 236 ~~~~~~~~~avGvNC~~p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~G~~ 312 (346)
.+.. -.-+|+.|.+++.+..+. +..-..+.+-| +|...++.- ..+-.+.. ..+|.+ .=+-
T Consensus 91 ~~~~---~~~ig~S~h~~~e~~~a~----~~g~dYv~~gp----vf~T~sk~~-----~~~~g~~~-l~~~~~~~~~pv~ 153 (180)
T PF02581_consen 91 LLGP---DKIIGASCHSLEEAREAE----ELGADYVFLGP----VFPTSSKPG-----APPLGLDG-LREIARASPIPVY 153 (180)
T ss_dssp HHTT---TSEEEEEESSHHHHHHHH----HCTTSEEEEET----SS--SSSSS------TTCHHHH-HHHHHHHTSSCEE
T ss_pred hccc---ceEEEeecCcHHHHHHhh----hcCCCEEEECC----ccCCCCCcc-----ccccCHHH-HHHHHHhCCCCEE
Confidence 4422 147899999876644432 11123455443 222222111 11222222 122332 2344
Q ss_pred EEeecCCCchHHHHHHHHH
Q 019107 313 LFGGCCRTTPNTIKAISRV 331 (346)
Q Consensus 313 ivGGCCGt~P~hI~al~~~ 331 (346)
.+|| .+|++|..+.+.
T Consensus 154 AlGG---I~~~~i~~l~~~ 169 (180)
T PF02581_consen 154 ALGG---ITPENIPELREA 169 (180)
T ss_dssp EESS-----TTTHHHHHHT
T ss_pred EEcC---CCHHHHHHHHHc
Confidence 5675 999999988743
No 486
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=31.10 E-value=3.2e+02 Score=23.01 Aligned_cols=75 Identities=20% Similarity=0.278 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCChhhHHHHHHHHhhhcCCc
Q 019107 191 PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKP 270 (346)
Q Consensus 191 ~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~p~~~~~~l~~l~~~~~~p 270 (346)
|+...-...-.++.+.| ..++.+. ..+..+..|+++.|.++.+... +++|.+=.... ..++.+.++...|
T Consensus 49 ~StRTR~SFe~A~~~LG-g~~i~~~---~~~s~~~k~Esl~Dtar~ls~~--~D~iv~R~~~~----~~~~~~a~~~~vP 118 (142)
T PF02729_consen 49 PSTRTRLSFEAAANRLG-GHVIYLD---PSTSSLGKGESLEDTARVLSRY--VDAIVIRHPSH----GALEELAEHSSVP 118 (142)
T ss_dssp --HHHHHHHHHHHHHTT-CEEEEEE---TTTSSTTTSSEHHHHHHHHHHH--CSEEEEEESSH----HHHHHHHHHCSSE
T ss_pred CCchhhhhHHHhhhcce-eEEEEEC---cccccCcCCCCHHHHHHHHHHh--hheEEEEeccc----hHHHHHHHhccCC
Confidence 67766455555677777 3444433 4556677899999999998763 67877775553 4456666667889
Q ss_pred EEEeeCCC
Q 019107 271 VIIYPNSG 278 (346)
Q Consensus 271 l~vypN~g 278 (346)
+ -|+|
T Consensus 119 V---INa~ 123 (142)
T PF02729_consen 119 V---INAG 123 (142)
T ss_dssp E---EEEE
T ss_pred e---EcCc
Confidence 7 3555
No 487
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=30.76 E-value=4.6e+02 Score=24.67 Aligned_cols=143 Identities=17% Similarity=0.052 Sum_probs=78.4
Q ss_pred ChHHHHHHHHHHHH-hhcceeeccccccCHHhHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 019107 53 SPHLVRKVHLDYLD-AGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISS 131 (346)
Q Consensus 53 ~Pe~V~~iH~~yl~-AGA~iI~TnTy~as~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~ 131 (346)
+.+.+++.-+.+++ +|++-|..+-...-... ++.++-.++.+.+++.+ .+
T Consensus 22 D~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~-----Ls~eEr~~~~~~~~~~~------------------------~~ 72 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFL-----LSTEEKKQVLEIVAEEA------------------------KG 72 (293)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECCCcccccc-----CCHHHHHHHHHHHHHHh------------------------CC
Confidence 46778888888888 99997665543322222 34455555555555432 12
Q ss_pred CCcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEccC----CCHHHHHHHHHHHHHhC
Q 019107 132 RPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETI----PNKLEAKAYAELLEEEG 207 (346)
Q Consensus 132 ~~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~----~~~~E~~a~~~a~~~~~ 207 (346)
+-.+|+| +|.. +.++..+ +++...+.|+|.+++=+= ++.+++..-.+.+.+..
T Consensus 73 ~~~viag-vg~~------------------~t~~ai~----~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~ 129 (293)
T PRK04147 73 KVKLIAQ-VGSV------------------NTAEAQE----LAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSA 129 (293)
T ss_pred CCCEEec-CCCC------------------CHHHHHH----HHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhC
Confidence 2345665 3221 3445444 566677899999986541 14456665555554432
Q ss_pred CCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCChh
Q 019107 208 ITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPR 254 (346)
Q Consensus 208 ~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~p~ 254 (346)
++|+++-=.....+. .-+++ .+..+.. .+-.+||-+++++
T Consensus 130 -~lPv~iYn~P~~tg~---~l~~~-~l~~L~~--~pnvvgiK~s~~d 169 (293)
T PRK04147 130 -DNPMIVYNIPALTGV---NLSLD-QFNELFT--LPKVIGVKQTAGD 169 (293)
T ss_pred -CCCEEEEeCchhhcc---CCCHH-HHHHHhc--CCCEEEEEeCCCC
Confidence 589986532211222 22333 4444433 2457889887643
No 488
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=30.76 E-value=4.2e+02 Score=24.24 Aligned_cols=72 Identities=14% Similarity=0.126 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEccCCC--HHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHh
Q 019107 162 SLETLKEFHRRRVLILANSGADLIAFETIPN--KLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIA 237 (346)
Q Consensus 162 ~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~--~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~ 237 (346)
..+++.+..++.++.+.+.||. |.+|+++. +.....+.+.+++.+ .| ++.+.++.......|.++.+.++..
T Consensus 127 ~~~~~~~~l~~l~~~a~~~gv~-l~lE~~~~~~~~~~~~~~~l~~~v~--~~-~~~~~~D~~h~~~~~~~~~~~l~~~ 200 (284)
T PRK13210 127 TRQRFIEGLAWAVEQAAAAQVM-LAVEIMDTPFMNSISKWKKWDKEID--SP-WLTVYPDVGNLSAWGNDVWSELKLG 200 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhCCE-EEEEecCccccCCHHHHHHHHHHcC--CC-ceeEEecCChhhhcCCCHHHHHHHh
Confidence 4566777777777878888985 45698643 122223334445443 34 3455443332223466666666543
No 489
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=30.74 E-value=4.5e+02 Score=24.49 Aligned_cols=88 Identities=16% Similarity=0.135 Sum_probs=45.1
Q ss_pred HHHHHHHhCCCCEEEEccCC-----------------------CHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCC
Q 019107 172 RRVLILANSGADLIAFETIP-----------------------NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGD 228 (346)
Q Consensus 172 ~~i~~l~~~gvD~i~~ET~~-----------------------~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~ 228 (346)
+.++.|.++|||+|=+- +| +++.....++.+++...+.|++ .++..+.- ...|
T Consensus 28 ~~~~~l~~~Gad~iElG-iPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv-~m~Y~Npi-~~~G- 103 (256)
T TIGR00262 28 EIIKTLIEAGADALELG-VPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIG-LLTYYNLI-FRKG- 103 (256)
T ss_pred HHHHHHHHcCCCEEEEC-CCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE-EEEeccHH-hhhh-
Confidence 45778888999999543 23 4455555666666542368876 55554320 1112
Q ss_pred CHHHHHHHhhcCCCceEEEECCCChhhHHHHHHHHhh
Q 019107 229 SILECASIADSCEQVVAVGINCTSPRFIHGLILSVRK 265 (346)
Q Consensus 229 ~~~~av~~~~~~~~~~avGvNC~~p~~~~~~l~~l~~ 265 (346)
+++.+..+.+ .+++++-+.=-.++....+++.+++
T Consensus 104 -~e~f~~~~~~-aGvdgviipDlp~ee~~~~~~~~~~ 138 (256)
T TIGR00262 104 -VEEFYAKCKE-VGVDGVLVADLPLEESGDLVEAAKK 138 (256)
T ss_pred -HHHHHHHHHH-cCCCEEEECCCChHHHHHHHHHHHH
Confidence 2333443333 2444444443333444444444443
No 490
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=30.61 E-value=3e+02 Score=26.26 Aligned_cols=71 Identities=15% Similarity=0.087 Sum_probs=42.9
Q ss_pred HHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCC------------------------CcccCCCCHHH
Q 019107 177 LANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDG------------------------INVVSGDSILE 232 (346)
Q Consensus 177 l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~------------------------~~l~~G~~~~~ 232 (346)
..+.+-=+-.|.+ .+++-++++++++.+.+ .|++++++-..- -+|.+|.+++.
T Consensus 11 A~~~~yAV~AfN~-~n~e~~~avi~AAee~~--sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~ 87 (282)
T TIGR01858 11 AQAGGYAVPAFNI-HNLETIQAVVETAAEMR--SPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHLDHHESLDD 87 (282)
T ss_pred HHHcCCeEEEEEe-CCHHHHHHHHHHHHHhC--CCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHH
Confidence 3334444445543 36666666666666654 566666643210 13457888887
Q ss_pred HHHHhhcCCCceEEEECCCC
Q 019107 233 CASIADSCEQVVAVGINCTS 252 (346)
Q Consensus 233 av~~~~~~~~~~avGvNC~~ 252 (346)
+.+.++ .|..-|++-.++
T Consensus 88 i~~ai~--~GFtSVM~DgS~ 105 (282)
T TIGR01858 88 IRQKVH--AGVRSAMIDGSH 105 (282)
T ss_pred HHHHHH--cCCCEEeecCCC
Confidence 777775 367888888885
No 491
>PRK10206 putative oxidoreductase; Provisional
Probab=30.43 E-value=1.8e+02 Score=28.27 Aligned_cols=46 Identities=22% Similarity=0.193 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCCCCEEEEc--cCCCHHHHHHHHHHHHHhCCCCcEEEEEE
Q 019107 169 FHRRRVLILANSGADLIAFE--TIPNKLEAKAYAELLEEEGITIPAWFSFN 217 (346)
Q Consensus 169 ~~~~~i~~l~~~gvD~i~~E--T~~~~~E~~a~~~a~~~~~~~~pv~is~~ 217 (346)
.|.+++..++++|..+++ | -..+++|++.+++++++.+ +++.+.+.
T Consensus 76 ~H~~~~~~al~aGkhVl~-EKPla~~~~ea~~l~~~a~~~~--~~l~v~~~ 123 (344)
T PRK10206 76 SHFEYAKRALEAGKNVLV-EKPFTPTLAEAKELFALAKSKG--LTVTPYQN 123 (344)
T ss_pred HHHHHHHHHHHcCCcEEE-ecCCcCCHHHHHHHHHHHHHhC--CEEEEEEe
Confidence 588888888889987765 7 2347899999999988876 66666554
No 492
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=30.42 E-value=3.4e+02 Score=25.78 Aligned_cols=84 Identities=10% Similarity=-0.024 Sum_probs=48.4
Q ss_pred HHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCC------------------------CcccCCCCHHH
Q 019107 177 LANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDG------------------------INVVSGDSILE 232 (346)
Q Consensus 177 l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~------------------------~~l~~G~~~~~ 232 (346)
..+.+.=+-.|.+ .+++-++++++++.+.+ .|+++.++-..- -+|.+|.+++.
T Consensus 13 A~~~~yaV~Afn~-~n~e~~~avi~aAe~~~--~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~ 89 (281)
T PRK06806 13 ANQENYGVGAFSV-ANMEMVMGAIKAAEELN--SPIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAVHFDHGMTFEK 89 (281)
T ss_pred HHHCCceEEEEEe-CCHHHHHHHHHHHHHhC--CCEEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEEECCCCCCHHH
Confidence 3334544455553 46677777777777654 677776643210 13557777776
Q ss_pred HHHHhhcCCCceEEEECCCC--hhhHHHHHHHHhh
Q 019107 233 CASIADSCEQVVAVGINCTS--PRFIHGLILSVRK 265 (346)
Q Consensus 233 av~~~~~~~~~~avGvNC~~--p~~~~~~l~~l~~ 265 (346)
+...++ .++..|.+-+.+ .+....+.+++.+
T Consensus 90 i~~Al~--~G~tsVm~d~s~~~~~eni~~t~~v~~ 122 (281)
T PRK06806 90 IKEALE--IGFTSVMFDGSHLPLEENIQKTKEIVE 122 (281)
T ss_pred HHHHHH--cCCCEEEEcCCCCCHHHHHHHHHHHHH
Confidence 666664 378888898874 2333344444433
No 493
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=30.40 E-value=3e+02 Score=26.21 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=41.9
Q ss_pred hCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCC------------------------CcccCCCCHHHHH
Q 019107 179 NSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDG------------------------INVVSGDSILECA 234 (346)
Q Consensus 179 ~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~------------------------~~l~~G~~~~~av 234 (346)
+.+.=+..|.+ .+++-++++++++.+.+ .|+++.++-..- -+|.+|.+++.+.
T Consensus 15 ~~~yaV~AfNv-~n~e~~~avi~AAee~~--sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHLDH~~~~e~i~ 91 (284)
T PRK12857 15 KGGYAVGAFNC-NNMEIVQAIVAAAEAEK--SPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHLDHGTDFEQVM 91 (284)
T ss_pred HcCCeEEEEEe-CCHHHHHHHHHHHHHhC--CCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHH
Confidence 34444455553 46677777777777654 777777653210 1245777777666
Q ss_pred HHhhcCCCceEEEECCCC
Q 019107 235 SIADSCEQVVAVGINCTS 252 (346)
Q Consensus 235 ~~~~~~~~~~avGvNC~~ 252 (346)
+.++. +...|++-.++
T Consensus 92 ~ai~~--GftSVM~DgS~ 107 (284)
T PRK12857 92 KCIRN--GFTSVMIDGSK 107 (284)
T ss_pred HHHHc--CCCeEEEeCCC
Confidence 66653 66788888875
No 494
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=29.98 E-value=4.2e+02 Score=24.01 Aligned_cols=147 Identities=12% Similarity=0.052 Sum_probs=78.9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcC
Q 019107 161 VSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSC 240 (346)
Q Consensus 161 ~~~~e~~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~ 240 (346)
.+.+++.+.-++..+ .++..+.+ ++.-+..+.+.++..+ ..+...+.|+ -|....-.-+.++-+.++.
T Consensus 15 ~t~~~i~~lc~~A~~----~~~~avcv----~p~~v~~a~~~l~~~~--v~v~tVigFP-~G~~~~~~K~~E~~~Av~~- 82 (211)
T TIGR00126 15 TTEEDIITLCAQAKT----YKFAAVCV----NPSYVPLAKELLKGTE--VRICTVVGFP-LGASTTDVKLYETKEAIKY- 82 (211)
T ss_pred CCHHHHHHHHHHHHh----hCCcEEEe----CHHHHHHHHHHcCCCC--CeEEEEeCCC-CCCCcHHHHHHHHHHHHHc-
Confidence 577888876655443 47776664 3444555666665433 3333333232 1221111222334444432
Q ss_pred CCceE--EEECCC-----ChhhHHHHHHHHhhhc-CCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCe
Q 019107 241 EQVVA--VGINCT-----SPRFIHGLILSVRKVT-SKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGAS 312 (346)
Q Consensus 241 ~~~~a--vGvNC~-----~p~~~~~~l~~l~~~~-~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 312 (346)
+++. +-+|-. ..+.+..-+..+.+.. ..|+-+---.+ .++.++....++-..+.|+.
T Consensus 83 -GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~--------------~L~~~ei~~a~~ia~eaGAD 147 (211)
T TIGR00126 83 -GADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETG--------------LLTDEEIRKACEICIDAGAD 147 (211)
T ss_pred -CCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecC--------------CCCHHHHHHHHHHHHHhCCC
Confidence 4444 444543 2344444455555443 45654421111 14456777777777899999
Q ss_pred EEeec-----CCCchHHHHHHHHHHcC
Q 019107 313 LFGGC-----CRTTPNTIKAISRVLSN 334 (346)
Q Consensus 313 ivGGC-----CGt~P~hI~al~~~~~~ 334 (346)
+|==. -|+|+++++.|++.++.
T Consensus 148 fvKTsTGf~~~gat~~dv~~m~~~v~~ 174 (211)
T TIGR00126 148 FVKTSTGFGAGGATVEDVRLMRNTVGD 174 (211)
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHhcc
Confidence 88332 45889999999998875
No 495
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=29.98 E-value=3e+02 Score=24.59 Aligned_cols=57 Identities=19% Similarity=0.073 Sum_probs=38.4
Q ss_pred CcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEECCCChhhHHHHHHHHhhhcCCcEEE
Q 019107 210 IPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVII 273 (346)
Q Consensus 210 ~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvNC~~p~~~~~~l~~l~~~~~~pl~v 273 (346)
.=++||....+.+-+.++..+.++++.+.. .++.++-+|+ ++ .++.+++..+.|++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~i~~~a~~~~~-~G~~~~~~~~--~~----~~~~i~~~~~iPil~ 65 (219)
T cd04729 9 GGLIVSCQALPGEPLHSPEIMAAMALAAVQ-GGAVGIRANG--VE----DIRAIRARVDLPIIG 65 (219)
T ss_pred CCeEEEccCCCCCCcCcHHHHHHHHHHHHH-CCCeEEEcCC--HH----HHHHHHHhCCCCEEE
Confidence 347888888888889999999988887765 4666554433 33 334444446788763
No 496
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=29.97 E-value=1.8e+02 Score=28.13 Aligned_cols=63 Identities=16% Similarity=0.125 Sum_probs=34.4
Q ss_pred HHHHHHhCCCCEEEEc--------c-------CCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHh
Q 019107 173 RVLILANSGADLIAFE--------T-------IPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIA 237 (346)
Q Consensus 173 ~i~~l~~~gvD~i~~E--------T-------~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~ 237 (346)
+++.+.++|+|+|.+. | .|.+.-+..+.+++++. +.||+. ++-+.++ .++++.+
T Consensus 148 ~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~--~vpVIA------~GGI~~~---~di~kAl 216 (325)
T cd00381 148 AARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDY--GVPVIA------DGGIRTS---GDIVKAL 216 (325)
T ss_pred HHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhc--CCcEEe------cCCCCCH---HHHHHHH
Confidence 3445777999999862 1 23333334444444443 388872 2323333 4556555
Q ss_pred hcCCCceEEEE
Q 019107 238 DSCEQVVAVGI 248 (346)
Q Consensus 238 ~~~~~~~avGv 248 (346)
. .+++++++
T Consensus 217 a--~GA~~Vmi 225 (325)
T cd00381 217 A--AGADAVML 225 (325)
T ss_pred H--cCCCEEEe
Confidence 3 36677666
No 497
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=29.95 E-value=2.7e+02 Score=26.58 Aligned_cols=70 Identities=17% Similarity=0.094 Sum_probs=41.3
Q ss_pred HhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCC------------------------CcccCCCCHHHH
Q 019107 178 ANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDG------------------------INVVSGDSILEC 233 (346)
Q Consensus 178 ~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~------------------------~~l~~G~~~~~a 233 (346)
.+.+-=+..|.+ .+++-++++++++.+.+ .|+++.++-..- -+|.+|.+++.+
T Consensus 14 ~~~~yaV~AfN~-~n~e~~~avi~AAee~~--sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHLDHg~~~e~i 90 (284)
T PRK09195 14 QRGGYAVPAFNI-HNLETMQVVVETAAELH--SPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLDHHEKFDDI 90 (284)
T ss_pred HHcCceEEEEEe-CCHHHHHHHHHHHHHhC--CCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Confidence 334444444443 46666666666666644 666666643110 134577788777
Q ss_pred HHHhhcCCCceEEEECCCC
Q 019107 234 ASIADSCEQVVAVGINCTS 252 (346)
Q Consensus 234 v~~~~~~~~~~avGvNC~~ 252 (346)
.+.++. |...|++-.++
T Consensus 91 ~~Ai~~--GftSVM~DgS~ 107 (284)
T PRK09195 91 AQKVRS--GVRSVMIDGSH 107 (284)
T ss_pred HHHHHc--CCCEEEeCCCC
Confidence 776653 67888888875
No 498
>PRK01060 endonuclease IV; Provisional
Probab=29.91 E-value=4.4e+02 Score=24.19 Aligned_cols=18 Identities=6% Similarity=-0.020 Sum_probs=12.8
Q ss_pred ChHHHHHHHHHHHHhhcc
Q 019107 53 SPHLVRKVHLDYLDAGAN 70 (346)
Q Consensus 53 ~Pe~V~~iH~~yl~AGA~ 70 (346)
.++.++++-+..-+.|-.
T Consensus 45 ~~~~~~~lk~~~~~~gl~ 62 (281)
T PRK01060 45 EELNIEAFKAACEKYGIS 62 (281)
T ss_pred CHHHHHHHHHHHHHcCCC
Confidence 566677777666677777
No 499
>PRK06801 hypothetical protein; Provisional
Probab=29.90 E-value=5e+02 Score=24.78 Aligned_cols=103 Identities=14% Similarity=0.181 Sum_probs=58.7
Q ss_pred HHHHHhCCCCEEEEc--cCC---CHHHHHHHHHHHHHhCCCCcEEEEEEE--cCCCc--cc-----CCCCHHHHHHHhhc
Q 019107 174 VLILANSGADLIAFE--TIP---NKLEAKAYAELLEEEGITIPAWFSFNS--KDGIN--VV-----SGDSILECASIADS 239 (346)
Q Consensus 174 i~~l~~~gvD~i~~E--T~~---~~~E~~a~~~a~~~~~~~~pv~is~~~--~~~~~--l~-----~G~~~~~av~~~~~ 239 (346)
++..++.|++.+++- ..| ++...+.+++.++..+ .+|=.-+-. ..+.. .. .-++++++.+.++.
T Consensus 90 i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~g--v~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~ 167 (286)
T PRK06801 90 VVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVG--VSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDR 167 (286)
T ss_pred HHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcC--CeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHH
Confidence 334566899999873 233 3344455556666655 333222211 11111 00 12366788877755
Q ss_pred CCCceEEEECCC--C------hhhHHHHHHHHhhhcCCcEEEeeCCCC
Q 019107 240 CEQVVAVGINCT--S------PRFIHGLILSVRKVTSKPVIIYPNSGE 279 (346)
Q Consensus 240 ~~~~~avGvNC~--~------p~~~~~~l~~l~~~~~~pl~vypN~g~ 279 (346)
.+++.+.+.-. | |..-...|+.+++..+.||++.-.+|.
T Consensus 168 -tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi 214 (286)
T PRK06801 168 -TGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGI 214 (286)
T ss_pred -HCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCC
Confidence 58898888442 1 334456778888777899988876664
No 500
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=29.78 E-value=1.2e+02 Score=28.52 Aligned_cols=43 Identities=16% Similarity=0.148 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEE
Q 019107 169 FHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWF 214 (346)
Q Consensus 169 ~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~i 214 (346)
.|.+.+..++++|.+++. +....+.+.+.+++++++.+ .++++
T Consensus 79 ~h~e~~~~aL~aGk~Vi~-~s~gal~~~~~L~~~A~~~g--~~l~v 121 (271)
T PRK13302 79 VLRAIVEPVLAAGKKAIV-LSVGALLRNEDLIDLARQNG--GQIIV 121 (271)
T ss_pred HHHHHHHHHHHcCCcEEE-ecchhHHhHHHHHHHHHHcC--CEEEE
Confidence 366777777888998876 56666778888888888865 66665
Done!