Citrus Sinensis ID: 019109

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340------
Protein Sequence
MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIAAVEERYRDAGIFIFLSLFCIFLFLFNPQLRKISSLNGIHMIMLC
Secondary Structure (PSIPRED)
ccccccccccccHHcccccccccccccccccEEEEEcccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccEEEEEEEEEccccEEEEEccccEEEEEEEcccEEEEcccccccEEEEEEEccccEEEEEEEcHHHHHHHHHHHcccccccccHHHHHHHHHHHcccEEEEEEEEEEEccEEEEEEEEEEcccccEEEEEEccHHHHHHHHHHccccEEEEHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccEEcccccHHHcccccccccccccHcHccHHHHHHccccccccEEEEEEcccccccccccEEEEEEccccccccccccccccccHHHcccEEEEEEEEEcccccEEEEEccccEEEEEEcccccccccccccccEEEEEEcccccEEEEEEEccHHHHHHHHHHcccccccccHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEEEccccEEEEEEEccccHHHHHHHHccccEEEcHHHHHHcccEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccHHHHEcc
Coil and Loop (DISEMBL)
mgslqgpvfcpavrarqgglyntvpstgpvmkarffrselwgfkgltaVKTKVGVFTrqqnarkckivqctfssssngngsmaenfnendedfvNSSVVEAVevksgadgfmikmrdgrhlrcvhnnpqgghlpdyaphpaIVLKmedgtglllPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTkvgnetecvsfdlrpsdainIAVRCKVPIqvnkylaysdgmrviesgklsthspgsdgllfteldkpsgqpcldtkefNLVRNMLIAAVEERYRDAGIFIFLSLFCIFLFLfnpqlrkisslNGIHMIMLC
Flexible Loop (DISEMBL)
MGSLQGPVFCPAvrarqgglyntvpstgpvMKARFFRSELWGFKGLTAVKTKVGvftrqqnarkckivqctfssssngngSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIAAVEERYRDAGIFIFLSLFCIFLFLFNPQLRKisslngihmimlc
Low Complexity Region (SEG)
MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTFSSSSNGNGSMAenfnendedfVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIAAVEERYRDAGififlslfciflflfNPQLRKISSLNGIHMIMLC
Disordered region (IsUnstruct)
*******VFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTF*************************VVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIE*************LLFT********PCLDTKEFNLVRNMLIAAVEERYRDAGIFIFLSLFCIFLFLFNPQLRKISSLNGIHMIM**
Disordered Region (DISOPRED)
****QGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTK**************************************EDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLM*********RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAY******************************************LVRNMLIAAVEERYRDAGIFIFLSLFCIFLFLFNPQLRKISSLNGIHMIMLC
Disordered Region (DISEMBL)
MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIAAVEERYRDAGIFIFLSLFCIFLFLFNPQLRKISSLNGIHMIMLC
Disordered Region (DISPRO)
***LQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTFSS**************NDEDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIES**********************GQPCLDTKEFNLVRNMLIAAVEERYRDAGIFIFLSLFCIFLFLFNPQLRKISSLNGIHMIMLC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIAAVEERYRDAGIFIFLSLFCIFLFLFNPQLRKISSLNGIHMIMLC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	346	2.2.26 [Sep-21-2011]
Q9FWS6	325	Bifunctional nuclease 1 O	yes	no	0.875	0.932	0.739	1e-131
Q93VH2	329	Bifunctional nuclease 2 O	no	no	0.895	0.942	0.711	1e-129
Q6YZM6	325	Bifunctional nuclease 2 O	yes	no	0.884	0.941	0.584	1e-104
Q09LL3	331	Bifunctional nuclease OS=	N/A	no	0.901	0.942	0.509	3e-82
Q5N8J3	331	Bifunctional nuclease 1 O	no	no	0.901	0.942	0.509	6e-82
B8A8D2	331	Bifunctional nuclease 1 O	N/A	no	0.901	0.942	0.509	4e-81
Q50604	164	Uncharacterized protein R	yes	no	0.320	0.676	0.228	0.0003

>sp|Q9FWS6|BBD1_ARATH Bifunctional nuclease 1 OS=Arabidopsis thaliana GN=BBD1 PE=2 SV=1

 Score =  468 bits (1205), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 233/315 (73%), Positives = 262/315 (83%), Gaps = 12/315 (3%)

Query: 1   MGSLQGPVFCPAVRARQ-GGLYNTVPSTGPVMKARFFRSELWG--FKGLTAVKTKVGVFT 57
           M S+Q PV CPA+R RQ G   + V  TG  +K R   S+ WG   KG+ +  T   +  
Sbjct: 1   MRSVQAPVVCPAIRPRQVGACASLVNYTG--LKPR---SQFWGNRTKGVKSQGTTTTITL 55

Query: 58  RQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRD 117
           R  N    K ++C FSS S+GNGS AENFNENDE++VNSSVVEAVEVKSGADGFM+KMRD
Sbjct: 56  RLCN----KSIKCVFSSHSDGNGSTAENFNENDEEYVNSSVVEAVEVKSGADGFMVKMRD 111

Query: 118 GRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIAR 177
           GR LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAM NVQIAR
Sbjct: 112 GRQLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIAR 171

Query: 178 PTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIA 237
           PT+YQVVKEM++KMGYEVRLVRVTKRVHEAYFAQL+L+KVGN +ECVSFDLRPSDAINIA
Sbjct: 172 PTMYQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAINIA 231

Query: 238 VRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVR 297
           VRCK+PIQVNKYLAYSDGMRVIESGK+ST +P SDGLLFTE D+P+GQ CLDTKEFN++ 
Sbjct: 232 VRCKIPIQVNKYLAYSDGMRVIESGKISTPAPASDGLLFTEQDRPNGQACLDTKEFNILS 291

Query: 298 NMLIAAVEERYRDAG 312
            M+ A  EERY +A 
Sbjct: 292 KMMQAVDEERYDEAA 306

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

>sp|Q93VH2|BBD2_ARATH Bifunctional nuclease 2 OS=Arabidopsis thaliana GN=BBD2 PE=2 SV=1

 Score =  463 bits (1191), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/312 (71%), Positives = 259/312 (83%), Gaps = 2/312 (0%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           M SLQ PV CP+VR RQ G+   + +   V K R  R + WG +     K++      + 
Sbjct: 1   MRSLQAPVVCPSVRPRQLGVSALLVNCS-VSKTRSLRKQFWGNQTKND-KSQAATVNLRL 58

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
           + R+ K ++C FSS S+G GS AENFNENDED+V SSV+EAVEVKSG DGFM+KM+DGR 
Sbjct: 59  HLRRYKSIKCLFSSHSDGTGSTAENFNENDEDYVKSSVLEAVEVKSGPDGFMVKMKDGRQ 118

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           LRCVHNNPQGG+LP+YAPH AIVLKMEDGTGLLLPIIVLEMPSVLLMAAM NVQIARPT+
Sbjct: 119 LRCVHNNPQGGNLPNYAPHSAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIARPTM 178

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQVVK+M++KMGYEVRLVRVT RVHEAYFA+LYL+KVG++++CVSFDLRPSDAINIAVRC
Sbjct: 179 YQVVKDMVDKMGYEVRLVRVTTRVHEAYFAELYLSKVGDKSDCVSFDLRPSDAINIAVRC 238

Query: 241 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNML 300
           KVPIQVNKYLAYSDGMRVI+SGKLS  +P SDGLLFTELD+P+GQPC DTKEF+LVRNM+
Sbjct: 239 KVPIQVNKYLAYSDGMRVIDSGKLSKQTPASDGLLFTELDRPNGQPCFDTKEFDLVRNMM 298

Query: 301 IAAVEERYRDAG 312
            A  EERY +A 
Sbjct: 299 QAVDEERYDEAA 310

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q6YZM6|BBD2_ORYSJ Bifunctional nuclease 2 OS=Oryza sativa subsp. japonica GN=BBD2 PE=2 SV=1

 Score =  379 bits (974), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/315 (58%), Positives = 248/315 (78%), Gaps = 9/315 (2%)

Query: 3   SLQGPVFCPAVRARQ---GGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQ 59
           +++GP+ C AV   +     + N++  +G +  A  F   +  ++ +T + + +    ++
Sbjct: 2   AMEGPILCRAVMQAKLPVTMISNSLTKSGQLGTA--FLGCVCKYRNITRLISPIYQPAQK 59

Query: 60  QNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGR 119
             A  C     +FSSSS+GNG MA NF+E+DED+VNS+V+EAVEV+SGA+G++IKMRDG+
Sbjct: 60  NFATVCG----SFSSSSDGNGYMAGNFSESDEDYVNSTVLEAVEVRSGAEGYVIKMRDGK 115

Query: 120 HLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPT 179
           +LRCVHNN QG ++P+ AP PAIVL++EDG+  LLPIIVLEMPSVLLMAA+RNV IARPT
Sbjct: 116 NLRCVHNNSQGRNIPESAPQPAIVLRIEDGSETLLPIIVLEMPSVLLMAAIRNVHIARPT 175

Query: 180 LYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVR 239
           +YQVVKEMI+KMGYEV+LVR+ KR+ EAY A+L+LTKVG+ TE ++FDLRPSDAINIAVR
Sbjct: 176 IYQVVKEMIDKMGYEVKLVRINKRIQEAYCAELFLTKVGDHTESITFDLRPSDAINIAVR 235

Query: 240 CKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNM 299
           CKVPIQV++ LAYSDG+R +E  +++  +  SDGLLFTELD+P GQPC++ +EF L+RNM
Sbjct: 236 CKVPIQVHRSLAYSDGIRSVEPARMAIAAGMSDGLLFTELDRPDGQPCVEAQEFGLIRNM 295

Query: 300 LIAAVEERYRDAGIF 314
           LIAAVEERY+DA  +
Sbjct: 296 LIAAVEERYKDAATW 310

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q09LL3|BBD_ORYMI Bifunctional nuclease OS=Oryza minuta GN=BBD PE=2 SV=1

 Score =  305 bits (781), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 162/318 (50%), Positives = 229/318 (72%), Gaps = 6/318 (1%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
           M  + GPV         G L +    +G +++    R    G +G    A +   G F  
Sbjct: 1   MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59

Query: 59  QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
           +++AR   +  V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60  ERHARSGWVWPVYCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119

Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIA 176
           DG++LRCV NNP+   L D APH AIVLKMEDG+ LLLPIIV+E PS++L+AA+RN++I 
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179

Query: 177 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 236
           RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAINI
Sbjct: 180 RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINI 239

Query: 237 AVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLV 296
           A RCKVPIQVN+ +AY++G++V++     ++   SD   +T LD+P  QPC + +EF+LV
Sbjct: 240 AFRCKVPIQVNRRIAYNNGLKVVQPTPSESYV-SSDQFQYTRLDRPDDQPCFEAQEFDLV 298

Query: 297 RNMLIAAVEERYRDAGIF 314
           RNML+AAVEERY+DA  +
Sbjct: 299 RNMLVAAVEERYKDAAQY 316

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Oryza minuta (taxid: 63629)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q5N8J3|BBD1_ORYSJ Bifunctional nuclease 1 OS=Oryza sativa subsp. japonica GN=BBD1 PE=2 SV=1

 Score =  304 bits (779), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 162/318 (50%), Positives = 229/318 (72%), Gaps = 6/318 (1%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
           M  + GPV         G L +    +G +++    R    G +G    A +   G F  
Sbjct: 1   MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59

Query: 59  QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
           +++AR   +  V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60  ERHARSGWVWPVCCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119

Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIA 176
           DG++LRCV NNP+   L D APH AIVLKMEDG+ LLLPIIV+E PS++L+AA+RN++I 
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179

Query: 177 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 236
           RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAINI
Sbjct: 180 RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINI 239

Query: 237 AVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLV 296
           A RCKVPIQVN+ +AY++G++V++     ++   SD   +T LD+P  QPC + +EF+LV
Sbjct: 240 AFRCKVPIQVNRRIAYNNGLKVVQPTPSESYV-SSDQFQYTRLDRPDDQPCFEAQEFDLV 298

Query: 297 RNMLIAAVEERYRDAGIF 314
           RNML+AAVEERY+DA  +
Sbjct: 299 RNMLVAAVEERYKDAAQY 316

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|B8A8D2|BBD1_ORYSI Bifunctional nuclease 1 OS=Oryza sativa subsp. indica GN=BBD1 PE=3 SV=1

 Score =  301 bits (772), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 162/318 (50%), Positives = 228/318 (71%), Gaps = 6/318 (1%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
           M  + GPV         G L +    +G +++    R    G +G    A +   G F  
Sbjct: 1   MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59

Query: 59  QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
           +++AR   +  V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60  ERHARSGWVWPVCCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119

Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIA 176
           DG++LRCV NNP+   L D APH AIVLKMEDG+ LLLPIIV+E PS++L+AA+RN++I 
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179

Query: 177 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 236
           RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAINI
Sbjct: 180 RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINI 239

Query: 237 AVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLV 296
           A RCKVPIQVN+ +AY++G++V++     ++   SD    T LD+P  QPC + +EF+LV
Sbjct: 240 AFRCKVPIQVNRRIAYNNGLKVVQPTPSESYV-SSDQFQCTRLDRPDDQPCFEAQEFDLV 298

Query: 297 RNMLIAAVEERYRDAGIF 314
           RNML+AAVEERY+DA  +
Sbjct: 299 RNMLVAAVEERYKDAAQY 316

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Oryza sativa subsp. indica (taxid: 39946)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q50604|Y1829_MYCTU Uncharacterized protein Rv1829/MT1877 OS=Mycobacterium tuberculosis GN=Rv1829 PE=4 SV=2

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 7/118 (5%)

Query: 139 HPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLV 198
            P ++L+  +G   L PI + +  +  +    + V+  RP  + +++++I  +G+ ++ V
Sbjct: 17  QPVLLLREANGDRYL-PIWIGQSEAAAIALEQQGVEPPRPLTHDLIRDLIAALGHSLKEV 75

Query: 199 RVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGM 256
           R+       ++A L   +       +    RPSD++ IA+R  VPI V + +    G+
Sbjct: 76  RIVDLQEGTFYADLIFDR------NIKVSARPSDSVAIALRVGVPIYVEEAVLAQAGL 127

Mycobacterium tuberculosis (taxid: 1773)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	346
359492154	327	PREDICTED: uncharacterized protein LOC10	0.904	0.957	0.808	1e-150
224062099	326	predicted protein [Populus trichocarpa]	0.893	0.947	0.821	1e-150
302142539	355	unnamed protein product [Vitis vinifera]	0.904	0.881	0.808	1e-150
255538728	327	conserved hypothetical protein [Ricinus	0.895	0.948	0.828	1e-148
224085706	328	predicted protein [Populus trichocarpa]	0.895	0.945	0.793	1e-143
449511603	327	PREDICTED: bifunctional nuclease 1-like	0.904	0.957	0.754	1e-140
449460235	327	PREDICTED: bifunctional nuclease 1-like	0.898	0.951	0.756	1e-139
255635435	328	unknown [Glycine max]	0.895	0.945	0.768	1e-137
147842247	964	hypothetical protein VITISV_009514 [Viti	0.843	0.302	0.729	1e-134
297842281	324	hypothetical protein ARALYDRAFT_476684 [	0.869	0.929	0.737	1e-129

>gi|359492154|ref|XP_003634371.1| PREDICTED: uncharacterized protein LOC100855103 [Vitis vinifera]

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 254/314 (80%), Positives = 281/314 (89%), Gaps = 1/314 (0%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MG+LQGPV CP VRA++ G+Y T+P + P+ K + FRS  WGF+G    +TK G    Q 
Sbjct: 1   MGTLQGPVICPTVRAKEAGVY-TLPVSLPLKKTKIFRSGFWGFRGNCGGRTKAGSVPHQL 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
           + RKCK +QC+FSSSS+GNGSMAENFNENDED+VNSSVVEAVEVKSGADGFMIKMRDGRH
Sbjct: 60  HTRKCKTLQCSFSSSSDGNGSMAENFNENDEDYVNSSVVEAVEVKSGADGFMIKMRDGRH 119

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           LRCVHNNPQGGH+PDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNVQIARPTL
Sbjct: 120 LRCVHNNPQGGHMPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTL 179

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQV+KEMI+KMGY V+LVRVTKRVHEAYFAQLYLTKVGNE E VSFDLRPSDAINIAVRC
Sbjct: 180 YQVMKEMIDKMGYAVKLVRVTKRVHEAYFAQLYLTKVGNEKESVSFDLRPSDAINIAVRC 239

Query: 241 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNML 300
           KVPIQVNKYLAYSDGMRVIES K+S  +  SDGLLFTELD+PSGQPC++TKEF+LVRNML
Sbjct: 240 KVPIQVNKYLAYSDGMRVIESAKVSVQASSSDGLLFTELDRPSGQPCIETKEFDLVRNML 299

Query: 301 IAAVEERYRDAGIF 314
           IAAVEERYRDA  +
Sbjct: 300 IAAVEERYRDAAQW 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062099|ref|XP_002300754.1| predicted protein [Populus trichocarpa] gi|222842480|gb|EEE80027.1| predicted protein [Populus trichocarpa]

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 258/314 (82%), Positives = 281/314 (89%), Gaps = 5/314 (1%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           M SLQGPV CP VRA+Q G +   P TGP++KAR  RSELWGFKG    KTKVG+ +RQ 
Sbjct: 1   MVSLQGPVICPTVRAKQAGKH-AFPMTGPLVKARLVRSELWGFKGY---KTKVGLTSRQL 56

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
            AR+C  VQC+ SSSS+GNGS AENFNENDED+VNSSVVEAVEVKSG+DGF+IKMRDGRH
Sbjct: 57  KARRCNTVQCSLSSSSDGNGSTAENFNENDEDYVNSSVVEAVEVKSGSDGFVIKMRDGRH 116

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNVQIARPT+
Sbjct: 117 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTM 176

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQVVK+M+EKMG+EV+LVRVTKRVHEAYFAQLYLTK+GNETECVSFDLRPSDAINIAVRC
Sbjct: 177 YQVVKDMVEKMGFEVKLVRVTKRVHEAYFAQLYLTKIGNETECVSFDLRPSDAINIAVRC 236

Query: 241 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNML 300
           KVPIQVNKYLAYSDGMRVIESGK    SP SDG+LFTELD+P+GQPCLDTKEFNLVRNM 
Sbjct: 237 KVPIQVNKYLAYSDGMRVIESGK-PIQSPASDGILFTELDRPTGQPCLDTKEFNLVRNMF 295

Query: 301 IAAVEERYRDAGIF 314
            AA EERY DA  +
Sbjct: 296 TAAFEERYGDAAQW 309

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142539|emb|CBI19742.3| unnamed protein product [Vitis vinifera]

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 254/314 (80%), Positives = 281/314 (89%), Gaps = 1/314 (0%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MG+LQGPV CP VRA++ G+Y T+P + P+ K + FRS  WGF+G    +TK G    Q 
Sbjct: 29  MGTLQGPVICPTVRAKEAGVY-TLPVSLPLKKTKIFRSGFWGFRGNCGGRTKAGSVPHQL 87

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
           + RKCK +QC+FSSSS+GNGSMAENFNENDED+VNSSVVEAVEVKSGADGFMIKMRDGRH
Sbjct: 88  HTRKCKTLQCSFSSSSDGNGSMAENFNENDEDYVNSSVVEAVEVKSGADGFMIKMRDGRH 147

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           LRCVHNNPQGGH+PDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNVQIARPTL
Sbjct: 148 LRCVHNNPQGGHMPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTL 207

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQV+KEMI+KMGY V+LVRVTKRVHEAYFAQLYLTKVGNE E VSFDLRPSDAINIAVRC
Sbjct: 208 YQVMKEMIDKMGYAVKLVRVTKRVHEAYFAQLYLTKVGNEKESVSFDLRPSDAINIAVRC 267

Query: 241 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNML 300
           KVPIQVNKYLAYSDGMRVIES K+S  +  SDGLLFTELD+PSGQPC++TKEF+LVRNML
Sbjct: 268 KVPIQVNKYLAYSDGMRVIESAKVSVQASSSDGLLFTELDRPSGQPCIETKEFDLVRNML 327

Query: 301 IAAVEERYRDAGIF 314
           IAAVEERYRDA  +
Sbjct: 328 IAAVEERYRDAAQW 341

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538728|ref|XP_002510429.1| conserved hypothetical protein [Ricinus communis] gi|223551130|gb|EEF52616.1| conserved hypothetical protein [Ricinus communis]

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 260/314 (82%), Positives = 281/314 (89%), Gaps = 4/314 (1%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           M SLQGPV CPAVRA+Q G Y T+P   P+ KAR  RS LW FKG++  KTK+  F+ QQ
Sbjct: 1   MTSLQGPVICPAVRAKQAGTY-TLPLNVPLFKARLVRSGLWRFKGISDYKTKLTGFSPQQ 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
            AR   + QC  SSSSNGNG+ AENFN NDED+V+SSVVEAVEVKSGADGFMIKMRDGRH
Sbjct: 60  -ARNTTL-QCCLSSSSNGNGNTAENFNVNDEDYVHSSVVEAVEVKSGADGFMIKMRDGRH 117

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           +RCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNVQIARPTL
Sbjct: 118 VRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTL 177

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNET+CVSFDLRPSDAINIAVRC
Sbjct: 178 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETQCVSFDLRPSDAINIAVRC 237

Query: 241 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNML 300
           KVPIQVNKYLAYSDGMRVIESGK+ THSPGSDGLLFTELD+P+GQPCLDTKEFNLV N++
Sbjct: 238 KVPIQVNKYLAYSDGMRVIESGKI-THSPGSDGLLFTELDRPTGQPCLDTKEFNLVSNLM 296

Query: 301 IAAVEERYRDAGIF 314
            A VEERY+DA  +
Sbjct: 297 NAVVEERYQDAAQW 310

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085706|ref|XP_002307674.1| predicted protein [Populus trichocarpa] gi|222857123|gb|EEE94670.1| predicted protein [Populus trichocarpa]

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 250/315 (79%), Positives = 278/315 (88%), Gaps = 5/315 (1%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MGSLQGPV  PAVRA+Q G Y + P TGP++K    RSEL GFKGL+  K+KV + +RQ 
Sbjct: 1   MGSLQGPVIYPAVRAKQAGTY-SFPMTGPLVKGWLIRSELRGFKGLSGCKSKVVLTSRQL 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
            AR+C +VQC+ SSSS+GNGS AENFNEN  D+VNSSVVEAVEVKSG+DGF+IKMRDGRH
Sbjct: 60  KARRCSVVQCSLSSSSDGNGSTAENFNENHGDYVNSSVVEAVEVKSGSDGFVIKMRDGRH 119

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           LRCVHNNPQGGHLPD APHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNVQIARPT+
Sbjct: 120 LRCVHNNPQGGHLPDNAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTM 179

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQVVKEM+EKMGYEV+LVRVTKRVHEAYFAQLYLTK+GNETECVSFDLRPSDAINIAVRC
Sbjct: 180 YQVVKEMVEKMGYEVKLVRVTKRVHEAYFAQLYLTKIGNETECVSFDLRPSDAINIAVRC 239

Query: 241 KVPIQVNKYLAYSDGMRVIESGKLSTHS-PGSDGLLFTELDKPSGQPCLDTKEFNLVRNM 299
           KVPIQVNKYLAYSDGMRV+    L  +S P  +GLLFTELD+P+GQPCLDTKEF+LVRNM
Sbjct: 240 KVPIQVNKYLAYSDGMRVMN---LKANSVPCFNGLLFTELDRPTGQPCLDTKEFDLVRNM 296

Query: 300 LIAAVEERYRDAGIF 314
           L AA+EERY DA  +
Sbjct: 297 LTAAIEERYGDAAQW 311

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511603|ref|XP_004164003.1| PREDICTED: bifunctional nuclease 1-like [Cucumis sativus]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 237/314 (75%), Positives = 274/314 (87%), Gaps = 1/314 (0%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MGSLQGPV CP + A+Q G + ++P    +M   F R +LWGF G+  +  K+   + ++
Sbjct: 1   MGSLQGPVVCPTICAKQAG-FCSLPINRSLMAFSFRRGQLWGFTGINGLNAKLPAISLKR 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
             RKCK ++C+FSSSS+ NGS AENFNE +E++V SSVVEAVEVKSGADGF+IKMRDGRH
Sbjct: 60  CTRKCKTLRCSFSSSSDDNGSTAENFNEKNEEYVESSVVEAVEVKSGADGFVIKMRDGRH 119

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           LRCVHNNP GGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNV IARPT+
Sbjct: 120 LRCVHNNPHGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVPIARPTM 179

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQVVKEMI+KMGYEV+LVRVTKRVHEAYFAQLYL+K+G ET+C+SFDLRPSDAINIAVRC
Sbjct: 180 YQVVKEMIDKMGYEVKLVRVTKRVHEAYFAQLYLSKIGCETDCLSFDLRPSDAINIAVRC 239

Query: 241 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNML 300
           +VPIQVNKYLAYSDGMRV+ESGKLST +  +DGLLFTELD+PSGQPC++ KEFNLVRNML
Sbjct: 240 QVPIQVNKYLAYSDGMRVVESGKLSTQALATDGLLFTELDRPSGQPCVEAKEFNLVRNML 299

Query: 301 IAAVEERYRDAGIF 314
           IAAVEERYRDA  +
Sbjct: 300 IAAVEERYRDAAQW 313

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460235|ref|XP_004147851.1| PREDICTED: bifunctional nuclease 1-like [Cucumis sativus]

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 236/312 (75%), Positives = 273/312 (87%), Gaps = 1/312 (0%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MGSLQGPV CP + A+Q G + ++P    +M   F R +LWGF G+  +  K+   + ++
Sbjct: 1   MGSLQGPVVCPTICAKQAG-FCSLPINRSLMAFSFRRGQLWGFTGINGLNAKLPAISLKR 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
             RKCK ++C+FSSSS+ NGS AENFNE +E++V SSVVEAVEVKSGADGF+IKMRDGRH
Sbjct: 60  CTRKCKTLRCSFSSSSDDNGSTAENFNEKNEEYVESSVVEAVEVKSGADGFVIKMRDGRH 119

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           LRCVHNNP GGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNV IARPT+
Sbjct: 120 LRCVHNNPHGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVPIARPTM 179

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQVVKEMI+KMGYEV+LVRVTKRVHEAYFAQLYL+K+G ET+C+SFDLRPSDAINIAVRC
Sbjct: 180 YQVVKEMIDKMGYEVKLVRVTKRVHEAYFAQLYLSKIGCETDCLSFDLRPSDAINIAVRC 239

Query: 241 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNML 300
           +VPIQVNKYLA+SDGMRV+ESGKLST +  +DGLLFTELD+PSGQPC++ KEFNLVRNML
Sbjct: 240 QVPIQVNKYLAFSDGMRVVESGKLSTQALATDGLLFTELDRPSGQPCVEAKEFNLVRNML 299

Query: 301 IAAVEERYRDAG 312
           IAAVEERYRDA 
Sbjct: 300 IAAVEERYRDAA 311

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255635435|gb|ACU18070.1| unknown [Glycine max]

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 242/315 (76%), Positives = 266/315 (84%), Gaps = 5/315 (1%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPV-MKARFFRSELWGFKGLTAVKTKVGVFTRQ 59
           M S+QGPV CP+VRA+Q G + ++P  G V M  R  RSE WG  G    K K G  +  
Sbjct: 1   MSSVQGPVVCPSVRAKQVG-FCSIPMIGAVKMNVRRIRSEFWGLNG---AKAKPGFLSCH 56

Query: 60  QNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGR 119
            N RKCK V CTF+S SN +GS A+NFNE DED+V SSV+EAVEVKSGADGF+IKMRDGR
Sbjct: 57  INTRKCKTVHCTFNSPSNDSGSTADNFNEKDEDYVISSVIEAVEVKSGADGFIIKMRDGR 116

Query: 120 HLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPT 179
           HLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNV IARPT
Sbjct: 117 HLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAIRNVPIARPT 176

Query: 180 LYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVR 239
           LYQVVKEMI+KMGYEV+ VRVT+RVHEAYFAQLYLTKVGN+ E VSFDLRPSDAINIAVR
Sbjct: 177 LYQVVKEMIDKMGYEVKFVRVTRRVHEAYFAQLYLTKVGNDAEYVSFDLRPSDAINIAVR 236

Query: 240 CKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNM 299
           CKVPIQVNKYLAYSDGMRVIESGKLST  PG DG LFTE+D+PSGQPC +T EFNL+ NM
Sbjct: 237 CKVPIQVNKYLAYSDGMRVIESGKLSTQFPGMDGRLFTEMDRPSGQPCAETTEFNLLHNM 296

Query: 300 LIAAVEERYRDAGIF 314
           L A VEERY+DA +F
Sbjct: 297 LKAVVEERYKDAALF 311

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147842247|emb|CAN76215.1| hypothetical protein VITISV_009514 [Vitis vinifera]

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 237/325 (72%), Positives = 262/325 (80%), Gaps = 33/325 (10%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MG+LQGPV CP VRA++ G+Y T+P + P+ K + FRS  WGF+G    +TK G    Q 
Sbjct: 1   MGTLQGPVICPTVRAKEAGVY-TLPVSLPLKKTKIFRSGFWGFRGNCGGRTKAGXVPHQL 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
           + RKCK +QC+FSSSS+GNGSMAENFNENDED+VNSSVVEAVEVKSGADGFMIKMRDGRH
Sbjct: 60  HTRKCKTLQCSFSSSSDGNGSMAENFNENDEDYVNSSVVEAVEVKSGADGFMIKMRDGRH 119

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           LRCVHNNPQGGH+PDYAPHPAIVLKMEDGTGLLLPI                  IARPTL
Sbjct: 120 LRCVHNNPQGGHMPDYAPHPAIVLKMEDGTGLLLPI------------------IARPTL 161

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTK--------------VGNETECVSF 226
           YQV+KEMI+KMGY V+LVRVTKRVHEAYFAQLYLTK              VGNE E VSF
Sbjct: 162 YQVMKEMIDKMGYAVKLVRVTKRVHEAYFAQLYLTKAYSCCTPCSLIDCLVGNEKESVSF 221

Query: 227 DLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQP 286
           DLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIES K+S  +  SDGLLFTELD+PSGQP
Sbjct: 222 DLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESAKVSVQASSSDGLLFTELDRPSGQP 281

Query: 287 CLDTKEFNLVRNMLIAAVEERYRDA 311
           C++TKEF+LVRNMLIAAVEERYRDA
Sbjct: 282 CIETKEFDLVRNMLIAAVEERYRDA 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842281|ref|XP_002889022.1| hypothetical protein ARALYDRAFT_476684 [Arabidopsis lyrata subsp. lyrata] gi|297334863|gb|EFH65281.1| hypothetical protein ARALYDRAFT_476684 [Arabidopsis lyrata subsp. lyrata]

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 233/316 (73%), Positives = 260/316 (82%), Gaps = 15/316 (4%)

Query: 1   MGSLQGPVFCPAVRARQ-GGLYNTVPSTGPVMKARFFRSELWGFK--GLTAVKTKVGVFT 57
           M SLQ PV CPA+R RQ G   + V  TG   + +F+ +   GFK  G T +        
Sbjct: 1   MRSLQAPVVCPAIRPRQVGACASLVNYTGLKPRRQFWGNRTKGFKSQGTTTI-------- 52

Query: 58  RQQNARKC-KIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
                R C K ++C FSS S+GNGS AENFNENDE++VNSSVVEAVEVKSGADGFM+KMR
Sbjct: 53  ---TLRLCDKSIKCVFSSHSDGNGSTAENFNENDEEYVNSSVVEAVEVKSGADGFMVKMR 109

Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIA 176
           DGR LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAM NVQIA
Sbjct: 110 DGRQLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIA 169

Query: 177 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 236
           RPT+YQVVKEM++KMGYEVRLVRVTKRVHEAYFAQLYL+KVGN +ECVSFDLRPSDAINI
Sbjct: 170 RPTMYQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLYLSKVGNASECVSFDLRPSDAINI 229

Query: 237 AVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLV 296
           AVRCK+PIQVNKYLAYSDGMRVIESGK+ST +P SDGLLFTE D+P+GQ CLDTKEFN++
Sbjct: 230 AVRCKIPIQVNKYLAYSDGMRVIESGKISTPTPASDGLLFTEQDRPNGQACLDTKEFNIL 289

Query: 297 RNMLIAAVEERYRDAG 312
             M+ A  EERY +A 
Sbjct: 290 SKMMQAVDEERYDEAA 305

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	346
TAIR|locus:2018422	325	BBD1 "AT1G75380" [Arabidopsis	0.875	0.932	0.722	9.7e-112
TAIR|locus:2013164	329	BBD2 "bifunctional nuclease in	0.893	0.939	0.684	1.1e-108
TAIR|locus:2156842	340	AT5G66050 [Arabidopsis thalian	0.514	0.523	0.360	1.1e-21
UNIPROTKB|Q50604	164	MT1877 "Uncharacterized protei	0.395	0.835	0.251	3.9e-05

TAIR|locus:2018422 BBD1 "AT1G75380" [Arabidopsis thaliana (taxid:3702)]

 Score = 1103 (393.3 bits), Expect = 9.7e-112, P = 9.7e-112
 Identities = 226/313 (72%), Positives = 253/313 (80%)

Query:     1 MGSLQGPVFCPAVRARQ-GGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQ 59
             M S+Q PV CPA+R RQ G   + V  TG  +K R   S+ WG +    VK++ G  T  
Sbjct:     1 MRSVQAPVVCPAIRPRQVGACASLVNYTG--LKPR---SQFWGNR-TKGVKSQ-GT-TTT 52

Query:    60 QNARKC-KIVQCTFSSSSNGNGSMAXXXXXXXXXXVNSSVVEAVEVKSGADGFMIKMRDG 118
                R C K ++C FSS S+GNGS A          VNSSVVEAVEVKSGADGFM+KMRDG
Sbjct:    53 ITLRLCNKSIKCVFSSHSDGNGSTAENFNENDEEYVNSSVVEAVEVKSGADGFMVKMRDG 112

Query:   119 RHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARP 178
             R LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAM NVQIARP
Sbjct:   113 RQLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIARP 172

Query:   179 TLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAV 238
             T+YQVVKEM++KMGYEVRLVRVTKRVHEAYFAQL+L+KVGN +ECVSFDLRPSDAINIAV
Sbjct:   173 TMYQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAINIAV 232

Query:   239 RCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRN 298
             RCK+PIQVNKYLAYSDGMRVIESGK+ST +P SDGLLFTE D+P+GQ CLDTKEFN++  
Sbjct:   233 RCKIPIQVNKYLAYSDGMRVIESGKISTPAPASDGLLFTEQDRPNGQACLDTKEFNILSK 292

Query:   299 MLIAAVEERYRDA 311
             M+ A  EERY +A
Sbjct:   293 MMQAVDEERYDEA 305

GO:0004518 "nuclease activity" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0031063 "regulation of histone deacetylation" evidence=IGI

GO:0043565 "sequence-specific DNA binding" evidence=IDA;IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IGI

TAIR|locus:2013164 BBD2 "bifunctional nuclease in basal defense response 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1074 (383.1 bits), Expect = 1.1e-108, P = 1.1e-108
 Identities = 213/311 (68%), Positives = 249/311 (80%)

Query:     1 MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
             M SLQ PV CP+VR RQ G+   + +   V K R  R + WG +     K++      + 
Sbjct:     1 MRSLQAPVVCPSVRPRQLGVSALLVNCS-VSKTRSLRKQFWGNQTKND-KSQAATVNLRL 58

Query:    61 NARKCKIVQCTFSSSSNGNGSMAXXXXXXXXXXVNSSVVEAVEVKSGADGFMIKMRDGRH 120
             + R+ K ++C FSS S+G GS A          V SSV+EAVEVKSG DGFM+KM+DGR 
Sbjct:    59 HLRRYKSIKCLFSSHSDGTGSTAENFNENDEDYVKSSVLEAVEVKSGPDGFMVKMKDGRQ 118

Query:   121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
             LRCVHNNPQGG+LP+YAPH AIVLKMEDGTGLLLPIIVLEMPSVLLMAAM NVQIARPT+
Sbjct:   119 LRCVHNNPQGGNLPNYAPHSAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIARPTM 178

Query:   181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
             YQVVK+M++KMGYEVRLVRVT RVHEAYFA+LYL+KVG++++CVSFDLRPSDAINIAVRC
Sbjct:   179 YQVVKDMVDKMGYEVRLVRVTTRVHEAYFAELYLSKVGDKSDCVSFDLRPSDAINIAVRC 238

Query:   241 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNML 300
             KVPIQVNKYLAYSDGMRVI+SGKLS  +P SDGLLFTELD+P+GQPC DTKEF+LVRNM+
Sbjct:   239 KVPIQVNKYLAYSDGMRVIDSGKLSKQTPASDGLLFTELDRPNGQPCFDTKEFDLVRNMM 298

Query:   301 IAAVEERYRDA 311
              A  EERY +A
Sbjct:   299 QAVDEERYDEA 309

GO:0003677 "DNA binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0006289 "nucleotide-excision repair" evidence=IEA

GO:0009611 "response to wounding" evidence=ISS

TAIR|locus:2156842 AT5G66050 [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 67/186 (36%), Positives = 102/186 (54%)

Query:   128 PQG-GHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMP-SVLLMAAMRNVQIARPTLYQVVK 185
             P G G L  +   P I LK+      LLP+IV +     LL   ++      P  +Q V 
Sbjct:   132 PIGLGFLRQFK-QPTIFLKISCDGDYLLPVIVGDAAVEKLLDVPLQGHTEECPDQFQFVS 190

Query:   186 EMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQ 245
              +++K+GYEV++V++T R+   Y+A L L K G + E +  D RPSDAIN+A  C+ PI 
Sbjct:   191 AVVDKLGYEVKMVKLTGRIVNTYYASLCLGKPG-DIEAICIDSRPSDAINVARACQAPIY 249

Query:   246 VNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIAAVE 305
             VNK +   + +++   G+  +  P  + +L +  D P   P   ++E  LVRNM +A+ E
Sbjct:   250 VNKAIVLEEAIKIGYGGRPQSAKPVFNVILDSAPDGPD--PL--SEELKLVRNMDLASKE 305

Query:   306 ERYRDA 311
             ERY DA
Sbjct:   306 ERYIDA 311

GO:0003677 "DNA binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006289 "nucleotide-excision repair" evidence=IEA

UNIPROTKB|Q50604 MT1877 "Uncharacterized protein Rv1829/MT1877" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 113 (44.8 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 37/147 (25%), Positives = 73/147 (49%)

Query:   140 PAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVR 199
             P ++L+  +G   L PI + +  +  +    + V+  RP  + +++++I  +G+ ++ VR
Sbjct:    18 PVLLLREANGDRYL-PIWIGQSEAAAIALEQQGVEPPRPLTHDLIRDLIAALGHSLKEVR 76

Query:   200 VTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVI 259
             +       ++A L   +  N    +    RPSD++ IA+R  VPI V + +    G+ + 
Sbjct:    77 IVDLQEGTFYADLIFDR--N----IKVSARPSDSVAIALRVGVPIYVEEAVLAQAGLLIP 130

Query:   260 -ESGKLSTHSPGSDGL-LFTE-LDKPS 283
              ES + +T +   D +  F E LD  S
Sbjct:   131 DESDEEATTAVREDEVEKFKEFLDSVS 157


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      346       321   0.00085  116 3  11 22  0.37    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  201 KB (2113 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.50u 0.13s 22.63t   Elapsed:  00:00:01
  Total cpu time:  22.50u 0.13s 22.63t   Elapsed:  00:00:01
  Start:  Fri May 10 21:30:08 2013   End:  Fri May 10 21:30:09 2013

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93VH2	BBD2_ARATH	3, ., 1, ., -, ., -	0.7115	0.8959	0.9422	no	no
B8A8D2	BBD1_ORYSI	3, ., 1, ., -, ., -	0.5094	0.9017	0.9425	N/A	no
Q9FWS6	BBD1_ARATH	3, ., 1, ., -, ., -	0.7396	0.8757	0.9323	yes	no
Q6YZM6	BBD2_ORYSJ	3, ., 1, ., -, ., -	0.5841	0.8843	0.9415	yes	no
Q09LL3	BBD_ORYMI	3, ., 1, ., -, ., -	0.5094	0.9017	0.9425	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0003027102 hypothetical protein (326 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	346
pfam02577	132	pfam02577, DNase-RNase, Bifunctional nuclease	7e-17
COG1259	151	COG1259, COG1259, Uncharacterized conserved protei	8e-14

>gnl|CDD|217117 pfam02577, DNase-RNase, Bifunctional nuclease

 Score = 75.6 bits (187), Expect = 7e-17
 Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 5/112 (4%)

Query: 137 APHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVR 196
           +  P ++L+ EDG   +LPI +    +  +  A+  V+  RP  + ++K+++E +G +V 
Sbjct: 12  SGAPVVLLRDEDG-ERVLPIWIGPAEAQAIALALEGVEPPRPLTHDLLKDVLEALGAKVE 70

Query: 197 LVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNK 248
            V +       ++A+L L   G E      D RPSDAI +A+R   PI V +
Sbjct: 71  RVVIDDLKDGTFYARLVLRDGGEEE----IDARPSDAIALALRTGAPIYVTE 118

This family is a bifunctional nuclease, with both DNase and RNase activity. It forms a wedge-shaped dimer, with each monomer being triangular in shape. A large groove at the thick end of the wedge contains a possible active site. Length = 132

>gnl|CDD|224179 COG1259, COG1259, Uncharacterized conserved protein [Function unknown]

 Score = 67.7 bits (166), Expect = 8e-14
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 5/116 (4%)

Query: 135 DYAPH--PAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMG 192
                  P +VL +E G   +LPI +    ++ +  A+  V+  RP  + ++ E+ E++G
Sbjct: 13  FVPVSSFPTVVLLLEGGDNRVLPIYIGASEALAIAKALEGVEPPRPLTHDLLVEIFEELG 72

Query: 193 YEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNK 248
             V  V +   +   Y+A L L +   + +    D RPSDAI +A+R   PI V +
Sbjct: 73  ARVEKVVIDDLIDNTYYATLILEQDDGKIQ---IDARPSDAIALALRVGAPIYVAE 125

Length = 151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	346
PF02577	135	DNase-RNase: Bifunctional nuclease; InterPro: IPR0	100.0
COG1259	151	Uncharacterized conserved protein [Function unknow	100.0
PF02151	36	UVR: UvrB/uvrC motif; InterPro: IPR001943 During t	95.7
COG3880	176	Modulator of heat shock repressor CtsR, McsA [Sign	92.37

>PF02577 DNase-RNase: Bifunctional nuclease; InterPro: IPR003729 This entry describes proteins of unknown function

Probab=100.00  E-value=2.2e-34  Score=248.27  Aligned_cols=125  Identities=29%  Similarity=0.476  Sum_probs=106.0

Q ss_pred             cccCCCCCCCcEEEEEecCCCceEEEEEecchhHHHHHHHHccCCCCCCChHHHHHHHHHHhCCeEeEEEEEeeECCEEE
Q 019109          130 GGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYF  209 (346)
Q Consensus       130 ~gaLd~ya~~PvLVL~eedg~~r~LPI~I~eaeAiaIa~aL~g~~~~RPlTHDLL~evLe~lg~~V~~V~I~~l~dGvFy  209 (346)
                      |..++..+++|++||++++++ +.|||||+..||.+|+.++++.+++||+|||||.++++++|.++++|+|++++||+||
T Consensus         5 gi~~~~~~~~~vvlL~~~~~~-~~lpI~i~~~ea~~i~~~~~~~~~~RP~thdLl~~~l~~lg~~v~~V~I~~~~dg~f~   83 (135)
T PF02577_consen    5 GISVDEPSGQPVVLLREEDGD-RVLPIWIGAFEAQAIALALEGEKPPRPLTHDLLSDLLEALGAEVERVVIDDLEDGVFY   83 (135)
T ss_dssp             EEEEETTTTEEEEEEEETTSS-EEEEEE--HHHHHHHHHHHCT---SS--HHHHHHHHHHHTTEEEEEEEEEEEETTEEE
T ss_pred             EEEEcCCCCceEEEEEEcCCC-EEEEEEECHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHcCCEEEEEEEEEEECCEEE
Confidence            445566677899999999987 6999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeecCccceEEEEeCChHHHHHHHHHcCCCEEEehhHHhhcCccc
Q 019109          210 AQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRV  258 (346)
Q Consensus       210 A~L~l~~~g~e~e~~~IDaRPSDAIALAlR~~~PIyV~e~Vl~~agI~v  258 (346)
                      |+|++++++   ++..+|+||||||+||+|+++||||+++|++++|+++
T Consensus        84 A~L~l~~~~---~~~~id~RpSDAiaLAl~~~~PI~v~~~vl~~~~~~~  129 (135)
T PF02577_consen   84 ARLVLRQGG---EEIEIDARPSDAIALALRFGAPIYVSEEVLDEAGVPV  129 (135)
T ss_dssp             EEEEEEETT---TEEEEEE-HHHHHHHHHHHT--EEEEHHHHHHH-EE-
T ss_pred             EEEEEecCC---EEEEEECcHhHHHHHHHHhCCCEEEeHHHHhhcCCCC
Confidence            999999776   5889999999999999999999999999999999998

The structure has been determined for one member of this group, the hypothetical protein TM0160 from Thermotoga maritima, which was found to consist of a duplication of two beta(3)-alpha(2) structural repeats, forming a single barrel-like beta-sheet [].; PDB: 1SJ5_A 1VJL_A.

>COG1259 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1e-32  Score=243.05  Aligned_cols=126  Identities=27%  Similarity=0.452  Sum_probs=116.0

Q ss_pred             cccCCCCCCCcEEEEEecCCCceEEEEEecchhHHHHHHHHccCCCCCCChHHHHHHHHHHhCCeEeEEEEEeeECCEEE
Q 019109          130 GGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYF  209 (346)
Q Consensus       130 ~gaLd~ya~~PvLVL~eedg~~r~LPI~I~eaeAiaIa~aL~g~~~~RPlTHDLL~evLe~lg~~V~~V~I~~l~dGvFy  209 (346)
                      +.+++.-.+.|++++...+++++.|||||+..||.+|+.++++..++||+||||+.++++.++.++++|+|++++|||||
T Consensus        10 ~i~~~~~~~~~~~v~~~~~~~~~~lPI~Ig~~ea~si~~~l~~~~p~RP~tHdll~~i~~~l~~~v~kVvI~d~~d~tyy   89 (151)
T COG1259          10 GIFFVPVSSFPTVVLLLEGGDNRVLPIYIGASEALAIAKALEGVEPPRPLTHDLLVEIFEELGARVEKVVIDDLIDNTYY   89 (151)
T ss_pred             EEEEecccCCceEEEEEEcCCCeEEEEEEeHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhCCcEEEEEEEEeccCeEE
Confidence            45566677888777776677768999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeecCccceEEEEeCChHHHHHHHHHcCCCEEEehhHHhhcCccc
Q 019109          210 AQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRV  258 (346)
Q Consensus       210 A~L~l~~~g~e~e~~~IDaRPSDAIALAlR~~~PIyV~e~Vl~~agI~v  258 (346)
                      |+|++++++   ....+|+||||||+||+|.|+||||.|+|+++++++.
T Consensus        90 A~L~~~~~~---~~~~iDaRPSDaI~LAlr~~~PI~V~e~v~~~a~~~~  135 (151)
T COG1259          90 ATLILEQDD---GKIQIDARPSDAIALALRVGAPIYVAEEVLDEAEIEI  135 (151)
T ss_pred             EEEEEEcCC---ceEEEecccchHHHHHHHhCCCEEEehhhhhhhcCcC
Confidence            999999987   3689999999999999999999999999999998887

>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []

Probab=95.70  E-value=0.007  Score=41.63  Aligned_cols=26  Identities=15%  Similarity=0.105  Sum_probs=21.0

Q ss_pred             hHHHHHHHHHHhh-hccHHHHhhcccc
Q 019109          292 EFNLVRNMLIAAV-EERYRDAGIFIFL  317 (346)
Q Consensus       292 e~elLremL~~Av-eEdYE~AA~lRd~  317 (346)
                      .+..|++.+..|+ ++|||.|+.|||-
T Consensus         3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~   29 (36)
T PF02151_consen    3 LIKELEEKMEEAVENEDFEKAARLRDQ   29 (36)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            3567888888887 9999999999985

UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.

>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]

Probab=92.37  E-value=0.085  Score=48.41  Aligned_cols=28  Identities=11%  Similarity=0.246  Sum_probs=25.4

Q ss_pred             hhhHHHHHHHHHHhh-hccHHHHhhcccc
Q 019109          290 TKEFNLVRNMLIAAV-EERYRDAGIFIFL  317 (346)
Q Consensus       290 ~~e~elLremL~~Av-eEdYE~AA~lRd~  317 (346)
                      ...+.+|++.|++.+ .||||.||.+||.
T Consensus       135 ~~~I~~L~e~Lq~~i~~EefEeAA~iRDq  163 (176)
T COG3880         135 KRKIIALKEALQDLIEREEFEEAAVIRDQ  163 (176)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            347899999999999 9999999999995

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	346
1vjl_A	164	Hypothetical protein TM0160; structural genomics,	4e-23
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07

>1vjl_A Hypothetical protein TM0160; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: d.257.1.1 PDB: 1sj5_A Length = 164

 Score = 93.3 bits (231), Expect = 4e-23
 Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 18/155 (11%)

Query: 112 MIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMR 171
           M K      ++ +  +            P ++L   +GT  +LPI +       L  AM 
Sbjct: 13  MRKAW----VKTLALDRVSNT-------PVVILG-IEGTNRVLPIWIGACEGHALALAME 60

Query: 172 NVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYL------TKVGNETECVS 225
            ++  RP  + ++  ++E +   V  V +       ++A L +       +   E   + 
Sbjct: 61  KMEFPRPLTHDLLLSVLESLEARVDKVIIHSLKDNTFYATLVIRDLTYTDEEDEEAALID 120

Query: 226 FDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIE 260
            D RPSDAI +AV+   PI V+  L     + +  
Sbjct: 121 IDSRPSDAIILAVKTGAPIFVSDNLVEKHSIELEV 155

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 3e-07
 Identities = 36/267 (13%), Positives = 74/267 (27%), Gaps = 83/267 (31%)

Query: 123 CVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEM-PSVLLMAAMRNVQIAR---- 177
               +P      D++ +  I L++      L  ++  +   + LL+  + NVQ A+    
Sbjct: 206 LYQIDPNWTSRSDHSSN--IKLRIHSIQAELRRLLKSKPYENCLLV--LLNVQNAKAWNA 261

Query: 178 -----PTL-----YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFD 227
                  L      QV   +       + L   +  +       L L  +    +    D
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ----D 317

Query: 228 LRPSDA--IN------IAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTEL 279
           L P +    N      IA   +  +       + +  ++    + S             L
Sbjct: 318 L-PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-------------L 363

Query: 280 DKPSGQPCLDTKEFNLVRNMLIAAVEERYRDAGIF-----IFLSLFCIF--------LFL 326
           +       L+  E+            + +    +F     I   L  +         + +
Sbjct: 364 N------VLEPAEY-----------RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406

Query: 327 FNPQLRKISSLN--------GIHMIML 345
              +L K S +          I  I L
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYL 433

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	346
1vjl_A	164	Hypothetical protein TM0160; structural genomics,	100.0
1e52_A	63	Excinuclease ABC subunit; DNA excision repair, UVR	93.44

>1vjl_A Hypothetical protein TM0160; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: d.257.1.1 PDB: 1sj5_A

Probab=100.00  E-value=1.1e-38  Score=283.45  Aligned_cols=129  Identities=24%  Similarity=0.372  Sum_probs=119.9

Q ss_pred             CcccCCCCCCCcEEEEEecCCCceEEEEEecchhHHHHHHHHccCCCCCCChHHHHHHHHHHhCCeEeEEEEEeeECCEE
Q 019109          129 QGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAY  208 (346)
Q Consensus       129 q~gaLd~ya~~PvLVL~eedg~~r~LPI~I~eaeAiaIa~aL~g~~~~RPlTHDLL~evLe~lg~~V~~V~I~~l~dGvF  208 (346)
                      +++++|+++++|+|||++++++ |+|||||+..||.+|+.++++.+++||+|||||.++++++|.++++|+|++++||+|
T Consensus        19 ~gi~ld~~~~~pvvvL~~~~g~-r~LPI~Ig~~EA~aI~~~l~~~~~~RPlThDLl~~il~~lg~~v~~V~I~~l~dgtf   97 (164)
T 1vjl_A           19 KTLALDRVSNTPVVILGIEGTN-RVLPIWIGACEGHALALAMEKMEFPRPLTHDLLLSVLESLEARVDKVIIHSLKDNTF   97 (164)
T ss_dssp             EEEEECTTTCCEEEEEEETTSS-EEEEEECCHHHHHHHHHHHHTCCCSSCCHHHHHHHHHHHTTEEEEEEEEEEEETTEE
T ss_pred             EEEEEcCCCCceEEEEEecCCC-EEEEEEECHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCEEEEEEEEEeECCEE
Confidence            4999999999999999999887 699999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEe------ecCccceEEEEeCChHHHHHHHHHcCCCEEEehhHHhhcCccc
Q 019109          209 FAQLYLT------KVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRV  258 (346)
Q Consensus       209 yA~L~l~------~~g~e~e~~~IDaRPSDAIALAlR~~~PIyV~e~Vl~~agI~v  258 (346)
                      ||+|+++      +++++.+.+++|+|||||||||+|+++||||+|+|++++|+++
T Consensus        98 yA~L~l~~~~~~~~~~~~~~~~~iDaRPSDAIaLAlR~~~PI~V~e~Vl~~a~i~~  153 (164)
T 1vjl_A           98 YATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSDNLVEKHSIEL  153 (164)
T ss_dssp             EEEEEEEECC--------CCEEEEEECHHHHHHHHHHHTCCEEEEHHHHHHHCEEC
T ss_pred             EEEEEEeccccccCCCCcceEEEEECcHHHHHHHHHHHCCCEEEcHHHHhhcCCCC
Confidence            9999999      6553335789999999999999999999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	346
d1vjla_	151	d.257.1.1 (A:) Hypothetical protein TM0160 {Thermo	2e-27

>d1vjla_ d.257.1.1 (A:) Hypothetical protein TM0160 {Thermotoga maritima [TaxId: 2336]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Hypothetical protein TM0160
superfamily: Hypothetical protein TM0160
family: Hypothetical protein TM0160
domain: Hypothetical protein TM0160
species: Thermotoga maritima [TaxId: 2336]

 Score =  103 bits (257), Expect = 2e-27
 Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 6/133 (4%)

Query: 135 DYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYE 194
           D   +  +V+   +GT  +LPI +       L  AM  ++  RP  + ++  ++E +   
Sbjct: 13  DRVSNTPVVILGIEGTNRVLPIWIGACEGHALALAMEKMEFPRPLTHDLLLSVLESLEAR 72

Query: 195 VRLVRVTKRVHEAYFAQLYL------TKVGNETECVSFDLRPSDAINIAVRCKVPIQVNK 248
           V  V +       ++A L +       +   E   +  D RPSDAI +AV+   PI V+ 
Sbjct: 73  VDKVIIHSLKDNTFYATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSD 132

Query: 249 YLAYSDGMRVIES 261
            L     + +  +
Sbjct: 133 NLVEKHSIELEVN 145

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	346
d1vjla_	151	Hypothetical protein TM0160 {Thermotoga maritima [	100.0
d1e52a_	56	C-terminal UvrC-binding domain of UvrB {Escherichi	92.35

>d1vjla_ d.257.1.1 (A:) Hypothetical protein TM0160 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Hypothetical protein TM0160
superfamily: Hypothetical protein TM0160
family: Hypothetical protein TM0160
domain: Hypothetical protein TM0160
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4.3e-37  Score=267.68  Aligned_cols=128  Identities=24%  Similarity=0.370  Sum_probs=118.4

Q ss_pred             cccCCCCCCCcEEEEEecCCCceEEEEEecchhHHHHHHHHccCCCCCCChHHHHHHHHHHhCCeEeEEEEEeeECCEEE
Q 019109          130 GGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYF  209 (346)
Q Consensus       130 ~gaLd~ya~~PvLVL~eedg~~r~LPI~I~eaeAiaIa~aL~g~~~~RPlTHDLL~evLe~lg~~V~~V~I~~l~dGvFy  209 (346)
                      +.+++..+++|+|||++++++ |.|||||+..||.+|+.++++.+++||+|||||.++++++|+++.+|+|++++||+||
T Consensus         9 ~i~~~~~~~~pvvlL~~~~~~-~~LPI~Ig~~EA~~I~~~l~~~~~~RP~thDLl~~~l~~lg~~v~~V~I~~~~dg~fy   87 (151)
T d1vjla_           9 TLALDRVSNTPVVILGIEGTN-RVLPIWIGACEGHALALAMEKMEFPRPLTHDLLLSVLESLEARVDKVIIHSLKDNTFY   87 (151)
T ss_dssp             EEEECTTTCCEEEEEEETTSS-EEEEEECCHHHHHHHHHHHHTCCCSSCCHHHHHHHHHHHTTEEEEEEEEEEEETTEEE
T ss_pred             EEEEecCCCCcEEEEEECCCC-eEEEEEEChHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhCCEEEEEEEEEEecCCeE
Confidence            667788889999999998877 6999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeecCc------cceEEEEeCChHHHHHHHHHcCCCEEEehhHHhhcCccc
Q 019109          210 AQLYLTKVGN------ETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRV  258 (346)
Q Consensus       210 A~L~l~~~g~------e~e~~~IDaRPSDAIALAlR~~~PIyV~e~Vl~~agI~v  258 (346)
                      |+|+++++..      +.+.+++||||||||+||+|+++||||+++|++++|+.+
T Consensus        88 A~L~l~~~~~~~~~~~~~~~~~iDaRPSDAIaLAlr~~~PI~v~~~Vl~~a~i~~  142 (151)
T d1vjla_          88 ATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSDNLVEKHSIEL  142 (151)
T ss_dssp             EEEEEEECC--------CCEEEEEECHHHHHHHHHHHTCCEEEEHHHHHHHCEEC
T ss_pred             EEEEEecCcccccccccCceeEeccChhHHHHHHHhhCCCEEEcHHHHHhcCCCC
Confidence            9999986431      125789999999999999999999999999999999876

>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: C-terminal UvrC-binding domain of UvrB
family: C-terminal UvrC-binding domain of UvrB
domain: C-terminal UvrC-binding domain of UvrB
species: Escherichia coli [TaxId: 562]

Probab=92.35  E-value=0.036  Score=39.33  Aligned_cols=26  Identities=4%  Similarity=0.118  Sum_probs=20.7

Q ss_pred             hHHHHHHHHHHh-hhccHHHHhhcccc
Q 019109          292 EFNLVRNMLIAA-VEERYRDAGIFIFL  317 (346)
Q Consensus       292 e~elLremL~~A-veEdYE~AA~lRd~  317 (346)
                      .++.|++-+.+| .+.+||.||+|||.
T Consensus        18 ~i~~Le~~M~~aa~~l~FE~AA~~RD~   44 (56)
T d1e52a_          18 KIHELEGLMMQHAQNLEFEEAAQIRDQ   44 (56)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            467777766655 59999999999996