BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019110
(346 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224110804|ref|XP_002315641.1| predicted protein [Populus trichocarpa]
gi|222864681|gb|EEF01812.1| predicted protein [Populus trichocarpa]
Length = 396
Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/347 (70%), Positives = 291/347 (83%), Gaps = 9/347 (2%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAE 60
M+SQL LIE+SFN RY+ WV EAL+ELP +FTITDP+ISGHPIVFAS GFLKMSGF R +
Sbjct: 1 MESQLALIEKSFNTRYSPWVREALEELPHNFTITDPTISGHPIVFASPGFLKMSGFRRDQ 60
Query: 61 IIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED 120
+IG NGRMFQGP+TNR+T+MEIREAIREER ++V+L NY+KDGTPFWMLF+MS VF KED
Sbjct: 61 VIGNNGRMFQGPKTNRKTVMEIREAIREERAVQVSLWNYRKDGTPFWMLFQMSPVFSKED 120
Query: 121 GRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLA 180
GR HF+ VQVPI+ K ++DG + EIVFGSCRREVCSDSL++L RVLA
Sbjct: 121 GRVIHFIGVQVPILRNKRS-------TDDGADAAWNEIVFGSCRREVCSDSLVELGRVLA 173
Query: 181 LDS--DDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGF 238
LD+ + G+E E+ EASDLEK++AAT I+NILSVLTHYS+ TGRL CGKRCS P G
Sbjct: 174 LDTYTNCRGVETEEPWEASDLEKQRAATTINNILSVLTHYSESTGRLACGKRCSSPAAGL 233
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
I+SSL ISLGRI QSFVLIDPHLP+MP+VYASDAFLKLTGYDR+EV+G N RFL+GV TD
Sbjct: 234 INSSLNISLGRINQSFVLIDPHLPNMPIVYASDAFLKLTGYDRHEVLGCNWRFLSGVGTD 293
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
++VL QI+ES+Q EQACTV LNYRKDKS+FWNLLH+SP+RNA+GK+
Sbjct: 294 SSVLNQIQESMQVEQACTVCFLNYRKDKSTFWNLLHMSPVRNATGKI 340
>gi|224102353|ref|XP_002312647.1| predicted protein [Populus trichocarpa]
gi|222852467|gb|EEE90014.1| predicted protein [Populus trichocarpa]
Length = 396
Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust.
Identities = 242/347 (69%), Positives = 293/347 (84%), Gaps = 9/347 (2%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAE 60
M+SQL IEQS N RY+LWV E LDEL +FTITDP+I+GHPIVFAS GFLKMSGFSR +
Sbjct: 1 MESQLAPIEQSLNARYSLWVREDLDELRHNFTITDPNITGHPIVFASPGFLKMSGFSREQ 60
Query: 61 IIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED 120
++G NGR+FQGP+TNR+T+MEIREAIREER + V LLNY+KDGTPFWMLF+MS VF KED
Sbjct: 61 VVGNNGRIFQGPKTNRKTVMEIREAIREERAVRVRLLNYRKDGTPFWMLFQMSPVFSKED 120
Query: 121 GRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLA 180
G HF+ VQVPI K + ++DG + EI FGSCRREVCSDSL++L RVLA
Sbjct: 121 GGVVHFIGVQVPIRRNKKL-------TDDGADAACNEIAFGSCRREVCSDSLVELTRVLA 173
Query: 181 LDSDDT--GLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGF 238
LD+D G++IE+SCEAS+LEK++AATAI++ILSVLT S+ TGR+VCGKRCSLP G
Sbjct: 174 LDTDTNCKGVKIEESCEASELEKQRAATAINDILSVLTGCSESTGRMVCGKRCSLPAAGL 233
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
I+SSL ISLGRIKQSFVLIDPHLP+MP+VYASDAFLKLTGYDR+EV+G++ FLNGVDTD
Sbjct: 234 INSSLNISLGRIKQSFVLIDPHLPNMPVVYASDAFLKLTGYDRHEVLGRDWNFLNGVDTD 293
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+++L+Q++ESIQ EQ CTV ILNYRKDKS+FWNLLH+SP+RNA+GK+
Sbjct: 294 SSILHQVQESIQVEQPCTVCILNYRKDKSTFWNLLHMSPVRNATGKI 340
>gi|225424899|ref|XP_002269901.1| PREDICTED: protein TWIN LOV 1 [Vitis vinifera]
Length = 397
Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust.
Identities = 251/350 (71%), Positives = 293/350 (83%), Gaps = 7/350 (2%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAE 60
M+SQL LIEQSFN RY++WV EALDELPD+FTITDPSISGHPIVFASRGFLKMSG+S+ E
Sbjct: 1 MESQLALIEQSFNYRYSVWVREALDELPDNFTITDPSISGHPIVFASRGFLKMSGYSKEE 60
Query: 61 IIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED 120
+IG+NGR FQGP T+RR+I EI+EAI+EER I+ LLNY+KDGTP WMLF MS VF KED
Sbjct: 61 VIGKNGRAFQGPGTSRRSITEIQEAIQEERTIQTILLNYRKDGTPIWMLFHMSPVFSKED 120
Query: 121 GRATHFVAVQVPIVSRKHMRNSGMSYSEDG---GGSRLREIVFGSCRREVCSDSLLDLDR 177
GR HFVAVQVP+ SRK R SG DG G R R+IVFGSCRREVCSDS+L+L+
Sbjct: 121 GRVIHFVAVQVPM-SRKP-RWSGSGPGRDGVCEDGCRSRDIVFGSCRREVCSDSVLELEH 178
Query: 178 VLALDS--DDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPG 235
VLA +S D + E+ EASD EKR+AA A++NILS+LTHYS+LTG+LVC KRC+L G
Sbjct: 179 VLAFESLFDSDNRDDEEPREASDQEKRRAAAAVNNILSLLTHYSELTGKLVCEKRCTLSG 238
Query: 236 MGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295
+G + +SL ISLGRIKQSFVL DPHLP+MP+VYASDAFLKLTGY R+EV+G C FL+GV
Sbjct: 239 IGLLGASLIISLGRIKQSFVLTDPHLPEMPIVYASDAFLKLTGYARHEVLGCQCMFLSGV 298
Query: 296 DTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
DTD + L Q+KESIQTEQACTVRILNYRKD+SSFWNLLHISP+RNASGK+
Sbjct: 299 DTDPSTLLQVKESIQTEQACTVRILNYRKDRSSFWNLLHISPVRNASGKI 348
>gi|255558228|ref|XP_002520141.1| twin lov protein, putative [Ricinus communis]
gi|223540633|gb|EEF42196.1| twin lov protein, putative [Ricinus communis]
Length = 375
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 238/338 (70%), Positives = 286/338 (84%), Gaps = 6/338 (1%)
Query: 7 LIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNG 66
LI+QSFN RY+ EAL+ LPD FTITDP ISGHPI+FAS GF K+SGF + EIIG+NG
Sbjct: 12 LIQQSFNTRYSFSAREALNGLPDCFTITDPYISGHPIIFASDGFSKLSGFPKDEIIGKNG 71
Query: 67 RMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHF 126
R+FQGP+TNRR+IMEIREAIREER ++++LLNY+KDGTPFW+LF M+ VF K+DGR HF
Sbjct: 72 RIFQGPKTNRRSIMEIREAIREERALQISLLNYRKDGTPFWLLFHMTPVFNKKDGRVVHF 131
Query: 127 VAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDT 186
VAVQVPI+ R++ G + SEDG G LREIVFGSCRREVCSDSL++L RVL+LDSD
Sbjct: 132 VAVQVPILKRRN----GSALSEDGSG--LREIVFGSCRREVCSDSLVELGRVLSLDSDSR 185
Query: 187 GLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYIS 246
G IE+ C AS+ EKRKA TAI++ILSVLT+YS+ G LVC KRC+L G G ISSSL IS
Sbjct: 186 GSNIEEPCVASEAEKRKAVTAINSILSVLTNYSECNGELVCAKRCNLVGAGMISSSLNIS 245
Query: 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIK 306
LGRI+QSFVL DPHLPDMP+VYASDAFLKLTGY R+EV+ +NCRFL G+DTD +V+ QIK
Sbjct: 246 LGRIRQSFVLTDPHLPDMPIVYASDAFLKLTGYARHEVLWRNCRFLGGIDTDRSVIEQIK 305
Query: 307 ESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGK 344
++IQ EQACTVRILNYR++K++FWNLLHISP+RNA+GK
Sbjct: 306 KNIQAEQACTVRILNYRRNKTTFWNLLHISPVRNATGK 343
>gi|30678020|ref|NP_849928.1| protein TWIN LOV 1 [Arabidopsis thaliana]
gi|18146960|dbj|BAB83170.1| twin LOV protein 1 [Arabidopsis thaliana]
gi|330250519|gb|AEC05613.1| protein TWIN LOV 1 [Arabidopsis thaliana]
Length = 397
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/337 (66%), Positives = 270/337 (80%), Gaps = 5/337 (1%)
Query: 11 SFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQ 70
SF+ RYTLW+ EAL+ELP +FTITDP ISGHPIVFAS GFLKM+G+SR E+IGRNG++FQ
Sbjct: 19 SFSGRYTLWIKEALEELPHNFTITDPFISGHPIVFASLGFLKMTGYSREEVIGRNGKVFQ 78
Query: 71 GPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
GP+TNRR+IMEIREAIREER ++V+LLNY+K G+PFWMLF M VFGK+DG+ T+FVAVQ
Sbjct: 79 GPKTNRRSIMEIREAIREERSVQVSLLNYRKSGSPFWMLFHMCPVFGKDDGKVTNFVAVQ 138
Query: 131 VPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDD--TGL 188
VPI R+H R G S FGSCRREVC + + DR L ++ DD GL
Sbjct: 139 VPISGREHHRKK---LRNVGDLSSDTSPTFGSCRREVCFGNFVCQDRALPVECDDDEQGL 195
Query: 189 EIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLG 248
E + CEAS+ EK KA AI+N+LS+L HYS+L+GRLVCGKR L G+ +SSSL ISLG
Sbjct: 196 EDWEQCEASESEKLKATEAINNVLSILVHYSELSGRLVCGKRYCLRGVDCLSSSLVISLG 255
Query: 249 RIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKES 308
RIKQSFVL +P LPDMP++YASDAFL LTGY R EV+GQNCRFL+GVDTD++VLY++KE
Sbjct: 256 RIKQSFVLTNPCLPDMPIIYASDAFLTLTGYKRQEVLGQNCRFLSGVDTDSSVLYEMKEC 315
Query: 309 IQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
I Q+CTV+ILNYRKDKSSFWNLLHISP+RNASGK
Sbjct: 316 ILKGQSCTVQILNYRKDKSSFWNLLHISPVRNASGKT 352
>gi|42570655|ref|NP_973401.1| protein TWIN LOV 1 [Arabidopsis thaliana]
gi|330250518|gb|AEC05612.1| protein TWIN LOV 1 [Arabidopsis thaliana]
Length = 358
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/336 (66%), Positives = 270/336 (80%), Gaps = 5/336 (1%)
Query: 11 SFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQ 70
SF+ RYTLW+ EAL+ELP +FTITDP ISGHPIVFAS GFLKM+G+SR E+IGRNG++FQ
Sbjct: 19 SFSGRYTLWIKEALEELPHNFTITDPFISGHPIVFASLGFLKMTGYSREEVIGRNGKVFQ 78
Query: 71 GPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
GP+TNRR+IMEIREAIREER ++V+LLNY+K G+PFWMLF M VFGK+DG+ T+FVAVQ
Sbjct: 79 GPKTNRRSIMEIREAIREERSVQVSLLNYRKSGSPFWMLFHMCPVFGKDDGKVTNFVAVQ 138
Query: 131 VPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDD--TGL 188
VPI R+H R G S FGSCRREVC + + DR L ++ DD GL
Sbjct: 139 VPISGREHHRKK---LRNVGDLSSDTSPTFGSCRREVCFGNFVCQDRALPVECDDDEQGL 195
Query: 189 EIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLG 248
E + CEAS+ EK KA AI+N+LS+L HYS+L+GRLVCGKR L G+ +SSSL ISLG
Sbjct: 196 EDWEQCEASESEKLKATEAINNVLSILVHYSELSGRLVCGKRYCLRGVDCLSSSLVISLG 255
Query: 249 RIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKES 308
RIKQSFVL +P LPDMP++YASDAFL LTGY R EV+GQNCRFL+GVDTD++VLY++KE
Sbjct: 256 RIKQSFVLTNPCLPDMPIIYASDAFLTLTGYKRQEVLGQNCRFLSGVDTDSSVLYEMKEC 315
Query: 309 IQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGK 344
I Q+CTV+ILNYRKDKSSFWNLLHISP+RNASGK
Sbjct: 316 ILKGQSCTVQILNYRKDKSSFWNLLHISPVRNASGK 351
>gi|297817884|ref|XP_002876825.1| pac motif-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297322663|gb|EFH53084.1| pac motif-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 386
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 226/339 (66%), Positives = 273/339 (80%), Gaps = 10/339 (2%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
E SFN RYTLW+ EAL+ELP +FTITDP ISGHPIVFAS GFLKM+G+SR E+IGRNG++
Sbjct: 9 EDSFNGRYTLWITEALEELPHNFTITDPFISGHPIVFASLGFLKMTGYSREEVIGRNGKV 68
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
FQGP+TNRR+IMEIREAIREER + V+LLNY+K G+PFWMLF MS VFG++DG+ +FVA
Sbjct: 69 FQGPKTNRRSIMEIREAIREERSVMVSLLNYRKSGSPFWMLFHMSPVFGRDDGKVINFVA 128
Query: 129 VQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDD-TG 187
VQVPI ++H + MS S E+VFGSCRREVC S + +R ++ DD G
Sbjct: 129 VQVPISGQEHRKLGVMS-------SDHSELVFGSCRREVCFGSFVHQNRASPVECDDEQG 181
Query: 188 LEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISL 247
LE + CEAS+ EK KA A++N+LS+LT YS+L+GRLVCGKR L G+ +SSSL ISL
Sbjct: 182 LEDWEHCEASESEKLKAVEAVNNVLSILTRYSELSGRLVCGKRYCLRGVDCLSSSLVISL 241
Query: 248 GRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKE 307
GRIKQSFVL +P LPDMP++YASDAFL LTGY R EV+GQNCRFL+GVDTD++VLY+IKE
Sbjct: 242 GRIKQSFVLTNPCLPDMPIIYASDAFLTLTGYKRQEVLGQNCRFLSGVDTDSSVLYEIKE 301
Query: 308 SIQTEQACTVRILNY--RKDKSSFWNLLHISPIRNASGK 344
I Q+CTV+ILNY RKDKSSFWNLLHISP+RNASGK
Sbjct: 302 CILKGQSCTVQILNYSNRKDKSSFWNLLHISPVRNASGK 340
>gi|18395411|ref|NP_565288.1| protein TWIN LOV 1 [Arabidopsis thaliana]
gi|75099072|sp|O64511.2|TLOV1_ARATH RecName: Full=Protein TWIN LOV 1
gi|15010682|gb|AAK74000.1| At2g02710/T20F6.15 [Arabidopsis thaliana]
gi|16323302|gb|AAL15406.1| At2g02710/T20F6.15 [Arabidopsis thaliana]
gi|20196957|gb|AAC05351.2| putative receptor-like protein kinase [Arabidopsis thaliana]
gi|330250520|gb|AEC05614.1| protein TWIN LOV 1 [Arabidopsis thaliana]
Length = 399
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 225/339 (66%), Positives = 270/339 (79%), Gaps = 7/339 (2%)
Query: 11 SFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQ 70
SF+ RYTLW+ EAL+ELP +FTITDP ISGHPIVFAS GFLKM+G+SR E+IGRNG++FQ
Sbjct: 19 SFSGRYTLWIKEALEELPHNFTITDPFISGHPIVFASLGFLKMTGYSREEVIGRNGKVFQ 78
Query: 71 GPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
GP+TNRR+IMEIREAIREER ++V+LLNY+K G+PFWMLF M VFGK+DG+ T+FVAVQ
Sbjct: 79 GPKTNRRSIMEIREAIREERSVQVSLLNYRKSGSPFWMLFHMCPVFGKDDGKVTNFVAVQ 138
Query: 131 VPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDD--TGL 188
VPI R+H R G S FGSCRREVC + + DR L ++ DD GL
Sbjct: 139 VPISGREHHRK---KLRNVGDLSSDTSPTFGSCRREVCFGNFVCQDRALPVECDDDEQGL 195
Query: 189 EIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLG 248
E + CEAS+ EK KA AI+N+LS+L HYS+L+GRLVCGKR L G+ +SSSL ISLG
Sbjct: 196 EDWEQCEASESEKLKATEAINNVLSILVHYSELSGRLVCGKRYCLRGVDCLSSSLVISLG 255
Query: 249 RIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKES 308
RIKQSFVL +P LPDMP++YASDAFL LTGY R EV+GQNCRFL+GVDTD++VLY++KE
Sbjct: 256 RIKQSFVLTNPCLPDMPIIYASDAFLTLTGYKRQEVLGQNCRFLSGVDTDSSVLYEMKEC 315
Query: 309 IQTEQACTVRILNY--RKDKSSFWNLLHISPIRNASGKV 345
I Q+CTV+ILNY RKDKSSFWNLLHISP+RNASGK
Sbjct: 316 ILKGQSCTVQILNYSNRKDKSSFWNLLHISPVRNASGKT 354
>gi|350537683|ref|NP_001234816.1| LOV/LOV protein [Solanum lycopersicum]
gi|311692316|dbj|BAJ24889.1| LOV/LOV protein [Solanum lycopersicum]
Length = 398
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 218/353 (61%), Positives = 275/353 (77%), Gaps = 10/353 (2%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAE 60
M+SQLGLIE+SFN +Y+ V EALDELPDSFTITDPSISGHPIV+ SRGFLK+ G+S+ E
Sbjct: 1 MESQLGLIEKSFNVKYSDGVREALDELPDSFTITDPSISGHPIVYVSRGFLKVFGYSKNE 60
Query: 61 IIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED 120
++G+NGR+FQGP+TNRR++M IREAIREER I+++LLNY+KDGTPFWMLF M V+ ++D
Sbjct: 61 VLGKNGRVFQGPKTNRRSVMAIREAIREERGIQISLLNYRKDGTPFWMLFNMCPVYSEKD 120
Query: 121 GRATHFVAVQVPIVSRKH----MRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLD 176
GR HF+ +QVPI+ R++ DGG R V+ CRREVCS+S++++D
Sbjct: 121 GRVVHFLGIQVPILRRRNSLGGGIGRNGGVCYDGGN--CRGYVYKCCRREVCSNSMMEMD 178
Query: 177 RVLALDS----DDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCS 232
R L++DS D T +++E CEASD EK KA+ A++NI+SVL +YS+L GRLV +RC
Sbjct: 179 RALSVDSVSGLDHTEVDVEGPCEASDQEKTKASVAVNNIMSVLANYSELNGRLVIDRRCC 238
Query: 233 LPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFL 292
G +S+SL IS GRIKQSFVL D HLPDMP+VYASDAFLKL GY R+EV+G+NCRFL
Sbjct: 239 QSGTSLLSASLNISFGRIKQSFVLTDAHLPDMPIVYASDAFLKLIGYLRHEVLGRNCRFL 298
Query: 293 NGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+G DT+ +QIK+ IQ EQ CTV ILNYRKD +SFWN LHISPIR+ASGKV
Sbjct: 299 SGEDTERGTQFQIKQCIQNEQPCTVHILNYRKDGTSFWNFLHISPIRSASGKV 351
>gi|449434827|ref|XP_004135197.1| PREDICTED: protein TWIN LOV 1-like [Cucumis sativus]
Length = 385
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 216/347 (62%), Positives = 272/347 (78%), Gaps = 13/347 (3%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAE 60
M+ LGLIEQS N+RY+LWV EAL++L D+FTITDP I+GHPIVF S GFLKM+G+++ E
Sbjct: 1 MELPLGLIEQSLNSRYSLWVREALNDLSDNFTITDPCIAGHPIVFVSPGFLKMTGYTKEE 60
Query: 61 IIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED 120
+IG+NG+MFQGP T+R ++M IREA+REE+ I++NLLNY+KDGTPFW+ F+M+ VF KED
Sbjct: 61 VIGKNGKMFQGPETSRSSVMLIREAVREEKEIQINLLNYRKDGTPFWVFFQMTPVFSKED 120
Query: 121 GRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLA 180
G+ HFV VQVPI+ G S GSCRRE+ SDS+ +LD L
Sbjct: 121 GQIIHFVGVQVPILKNSRKSRCGACKS-----------FLGSCRRELMSDSISELDCTLN 169
Query: 181 LDS--DDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGF 238
DS D +EIE+ CEA D EK++AA AI NIL VLTH+S++TG LVC +RCSLP +G
Sbjct: 170 RDSQPDSNRVEIEEPCEACDDEKQRAAIAISNILFVLTHHSEVTGGLVCERRCSLPRVGI 229
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+ SSL SL RIKQSFVL DP+LPDMP+VYASD FLKLTGY R EV+G+NCRFL+G+DTD
Sbjct: 230 LCSSLNTSLNRIKQSFVLTDPNLPDMPIVYASDEFLKLTGYTRCEVLGRNCRFLSGIDTD 289
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
++ L++IKES+Q+EQACTVRILNYRK+KSSFWN LH+SP+ NASGK+
Sbjct: 290 SSTLFKIKESLQSEQACTVRILNYRKNKSSFWNDLHVSPVHNASGKL 336
>gi|449530273|ref|XP_004172120.1| PREDICTED: protein TWIN LOV 1-like [Cucumis sativus]
Length = 382
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 217/347 (62%), Positives = 275/347 (79%), Gaps = 16/347 (4%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAE 60
M+ LGLIEQS N+RY+LWV EAL++L D+FTITDP I+GHPIVF S GFLKM+G+++ E
Sbjct: 1 MELPLGLIEQSLNSRYSLWVREALNDLSDNFTITDPCIAGHPIVFVSPGFLKMTGYTKEE 60
Query: 61 IIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED 120
+IG+NG+MFQGP T+R ++M IREA+REE+ I++NLLNY+KDGTPFW+ F+M+ VF KED
Sbjct: 61 VIGKNGKMFQGPETSRSSVMLIREAVREEKEIQINLLNYRKDGTPFWVFFQMTPVFSKED 120
Query: 121 GRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLA 180
G+ HFV VQVPI+ K+ R S + GSCRRE+ SDS+ +LD L
Sbjct: 121 GQIIHFVGVQVPIL--KNSRKSRCGF------------FLGSCRRELMSDSISELDCTLN 166
Query: 181 LDS--DDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGF 238
DS D +EIE+ CEA D EK++AA AI NIL VLTH+S++TG LVC +RCSLP +G
Sbjct: 167 RDSQPDSNRVEIEEPCEACDDEKQRAAIAISNILFVLTHHSEVTGGLVCERRCSLPRVGI 226
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+ SSL SL RIKQSFVL DP+LPDMP+VYASD FLKLTGY R EV+G+NCRFL+G+DTD
Sbjct: 227 LCSSLNTSLNRIKQSFVLTDPNLPDMPIVYASDEFLKLTGYTRCEVLGRNCRFLSGIDTD 286
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
++ L++IKES+Q+EQACTVRILNYRK+KSSFWN LH+SP+ NASGK+
Sbjct: 287 SSTLFKIKESLQSEQACTVRILNYRKNKSSFWNDLHVSPVHNASGKL 333
>gi|356498170|ref|XP_003517926.1| PREDICTED: protein TWIN LOV 1-like [Glycine max]
Length = 388
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 218/351 (62%), Positives = 271/351 (77%), Gaps = 20/351 (5%)
Query: 1 MDSQLG--LIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSR 58
M+ +LG I++SFN RYT ++LDELPDSFTITDPSI GHPIVFAS GFLK++G++
Sbjct: 3 MELELGSTTIQRSFNTRYTRHARDSLDELPDSFTITDPSIPGHPIVFASPGFLKLTGYAA 62
Query: 59 AEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGK 118
E++GR +FQGPRT+R++++EIREA+REER +V LLNY+KDGTPFWMLF++ VF
Sbjct: 63 REVLGRPAAIFQGPRTSRKSVIEIREAVREERNAQVVLLNYRKDGTPFWMLFRVCPVFSS 122
Query: 119 EDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRV 178
+ G HFVAVQVP+ ++ GS +R+ FG CR+EVC+DSL ++ RV
Sbjct: 123 DGGAVVHFVAVQVPLQKKE--------------GSGVRDFGFGCCRKEVCADSLAEIGRV 168
Query: 179 LALDS----DDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLP 234
+L+ D LE E+ CEASD EKR A A+DNI SVLTHYS+ TGRLVC KRCS+P
Sbjct: 169 CSLEQVLEPDVRELEREEPCEASDEEKRSAVNAMDNIFSVLTHYSEATGRLVCQKRCSIP 228
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
+G +S+SL ISLGRIKQSFVL +P L DMP+VYASDAFLKLTGY +NEV+G+NCRFL G
Sbjct: 229 DVGLLSTSLIISLGRIKQSFVLTNPRLSDMPIVYASDAFLKLTGYAKNEVLGRNCRFLGG 288
Query: 295 VDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
DTDT+ L+ I+ESI+TEQ CTVRILNYRKDKSSFWN LHISP+R+ASGKV
Sbjct: 289 TDTDTSTLHLIRESIKTEQPCTVRILNYRKDKSSFWNFLHISPVRDASGKV 339
>gi|358248936|ref|NP_001240221.1| protein TWIN LOV 1-like [Glycine max]
gi|156069000|gb|ABU44493.1| PAS/LOV protein 1 [Glycine max]
Length = 390
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 217/351 (61%), Positives = 272/351 (77%), Gaps = 20/351 (5%)
Query: 1 MDSQLG--LIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSR 58
++ +LG I++SF+ RYT ++L ELPDSFTITDPSI GHPIVFAS GFLK++G+S
Sbjct: 5 LEQELGSTTIQRSFDARYTRHARDSLGELPDSFTITDPSIPGHPIVFASPGFLKLTGYSL 64
Query: 59 AEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGK 118
E++GR +FQGPRT+R++++EIREA+REER +V LLNY++DGTPFWMLF++S VF
Sbjct: 65 REVLGRPAAIFQGPRTSRKSVIEIREAVREERNAQVVLLNYRRDGTPFWMLFRVSPVFSS 124
Query: 119 EDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRV 178
+ G HFVAVQVP+ ++ GS +R+ FG CR+EVC DSL ++DRV
Sbjct: 125 DGGAVVHFVAVQVPLQKKE--------------GSGVRDFGFGCCRKEVCVDSLAEIDRV 170
Query: 179 LALDS----DDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLP 234
+L+ D +E E+ CEASD EKR A TA+D+I SVLTHYS+ TGRLVC KR S+P
Sbjct: 171 CSLEQVLEPDVREVEREEPCEASDDEKRSAVTAMDSIFSVLTHYSEATGRLVCRKRSSIP 230
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
+G +S+SL ISLGRIKQSFVL +PHLPDMP+VYASDAFLKLTGY +NEV+G NCRFL G
Sbjct: 231 DVGLLSTSLIISLGRIKQSFVLTNPHLPDMPIVYASDAFLKLTGYAKNEVLGHNCRFLGG 290
Query: 295 VDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
DTDT+ L+ I+ESI+TEQ CTVRILNYRKDKSSFWN LHISP+R+ASGKV
Sbjct: 291 TDTDTSTLHLIRESIKTEQPCTVRILNYRKDKSSFWNFLHISPVRDASGKV 341
>gi|296086433|emb|CBI32022.3| unnamed protein product [Vitis vinifera]
Length = 345
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/298 (69%), Positives = 244/298 (81%), Gaps = 7/298 (2%)
Query: 53 MSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKM 112
MSG+S+ E+IG+NGR FQGP T+RR+I EI+EAI+EER I+ LLNY+KDGTP WMLF M
Sbjct: 1 MSGYSKEEVIGKNGRAFQGPGTSRRSITEIQEAIQEERTIQTILLNYRKDGTPIWMLFHM 60
Query: 113 SLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDG---GGSRLREIVFGSCRREVCS 169
S VF KEDGR HFVAVQVP+ SRK R SG DG G R R+IVFGSCRREVCS
Sbjct: 61 SPVFSKEDGRVIHFVAVQVPM-SRKP-RWSGSGPGRDGVCEDGCRSRDIVFGSCRREVCS 118
Query: 170 DSLLDLDRVLALDS--DDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVC 227
DS+L+L+ VLA +S D + E+ EASD EKR+AA A++NILS+LTHYS+LTG+LVC
Sbjct: 119 DSVLELEHVLAFESLFDSDNRDDEEPREASDQEKRRAAAAVNNILSLLTHYSELTGKLVC 178
Query: 228 GKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQ 287
KRC+L G+G + +SL ISLGRIKQSFVL DPHLP+MP+VYASDAFLKLTGY R+EV+G
Sbjct: 179 EKRCTLSGIGLLGASLIISLGRIKQSFVLTDPHLPEMPIVYASDAFLKLTGYARHEVLGC 238
Query: 288 NCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
C FL+GVDTD + L Q+KESIQTEQACTVRILNYRKD+SSFWNLLHISP+RNASGK+
Sbjct: 239 QCMFLSGVDTDPSTLLQVKESIQTEQACTVRILNYRKDRSSFWNLLHISPVRNASGKI 296
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 66/109 (60%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
+L + SF +TDP + PIV+AS FLK++G++R E++G G T+ T++++
Sbjct: 197 SLGRIKQSFVLTDPHLPEMPIVYASDAFLKLTGYARHEVLGCQCMFLSGVDTDPSTLLQV 256
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+E+I+ E+ V +LNY+KD + FW L +S V G+ + V VQ+
Sbjct: 257 KESIQTEQACTVRILNYRKDRSSFWNLLHISPVR-NASGKIAYSVWVQM 304
>gi|388511109|gb|AFK43618.1| unknown [Medicago truncatula]
Length = 394
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 208/349 (59%), Positives = 262/349 (75%), Gaps = 19/349 (5%)
Query: 8 IEQSFNNRYTLWVHEALDELPDS--FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN 65
I++SF+ Y+ + E+L+EL + FTITDPS+S HPI+FAS FL ++GF+R E++GR+
Sbjct: 4 IKKSFDEFYSHYARESLEELSEEIPFTITDPSLSNHPIIFASHAFLNITGFTRDEVLGRS 63
Query: 66 GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATH 125
G MFQG T RR++MEIREA+REER V L+NY+K+GTPFW+ +S VF + G H
Sbjct: 64 GSMFQGSATCRRSVMEIREAVREERETNVVLVNYRKNGTPFWVFLTVSPVFCVKSGAVVH 123
Query: 126 FVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRV------L 179
FVAVQVP+ R + + + D +F CR+EVCSDSL++LDRV L
Sbjct: 124 FVAVQVPLKLRVYGGGGSVVVNHD--------FMFRCCRKEVCSDSLVELDRVSSRNQVL 175
Query: 180 ALDSDD---TGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGM 236
L+ DD T LE E+ EASD E+R A TA+DNI SVLTHYS+LTGRLVC KRCS P +
Sbjct: 176 DLEHDDDDVTDLESEEPREASDDERRSAVTAMDNIFSVLTHYSELTGRLVCRKRCSNPAV 235
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G +SSSL ISLGRIKQSFVL +PHLPDMP+VYASDAF+KLTGY R+EV+G+NCRFL G +
Sbjct: 236 GLLSSSLIISLGRIKQSFVLTNPHLPDMPIVYASDAFMKLTGYTRDEVLGRNCRFLGGRN 295
Query: 297 TDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TD + L I+ESI+TE+ CTVRILNYRKDKSSFWNLLHISP+R+A+GKV
Sbjct: 296 TDDSALQLIRESIKTEKLCTVRILNYRKDKSSFWNLLHISPVRDATGKV 344
>gi|357486599|ref|XP_003613587.1| Blue-light-activated histidine kinase [Medicago truncatula]
gi|355514922|gb|AES96545.1| Blue-light-activated histidine kinase [Medicago truncatula]
Length = 394
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 208/349 (59%), Positives = 262/349 (75%), Gaps = 19/349 (5%)
Query: 8 IEQSFNNRYTLWVHEALDELPDS--FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN 65
I++SF+ Y+ + E+L+EL + FTITDPS+S HPI+FAS FL ++GF+R E++GR+
Sbjct: 4 IKKSFDEFYSHYARESLEELSEEIPFTITDPSLSNHPIIFASHAFLNITGFTRDEVLGRS 63
Query: 66 GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATH 125
G MFQG T RR++MEIREA+REER V L+NY+K+GTPFW+ +S VF + G H
Sbjct: 64 GSMFQGSATCRRSVMEIREAVREERETNVVLVNYRKNGTPFWVFLTVSPVFCVKSGAVVH 123
Query: 126 FVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRV------L 179
FVAVQVP+ R + + + D +F CR+EVCSDSL++LDRV L
Sbjct: 124 FVAVQVPLKLRVYGGGGSVVVNHD--------FMFRCCRKEVCSDSLVELDRVSSRNQVL 175
Query: 180 ALDSDD---TGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGM 236
L+ DD T LE E+ EASD E+R A TA+DNI SVLTHYS+LTGRLVC KRCS P +
Sbjct: 176 DLEHDDDDVTDLESEEPREASDDERRSAVTAMDNIFSVLTHYSELTGRLVCRKRCSNPAV 235
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G +SSSL ISLGRIKQSFVL +PHLPDMP+VYASDAF+KLTGY R+EV+G+NCRFL G +
Sbjct: 236 GLLSSSLIISLGRIKQSFVLTNPHLPDMPIVYASDAFMKLTGYTRDEVLGRNCRFLGGRN 295
Query: 297 TDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TD + L I+ESI+TE+ CTVRILNYRKDKSSFWNLLHISP+R+A+GKV
Sbjct: 296 TDDSALQLIRESIKTEKLCTVRILNYRKDKSSFWNLLHISPVRDATGKV 344
>gi|218187650|gb|EEC70077.1| hypothetical protein OsI_00692 [Oryza sativa Indica Group]
Length = 395
Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 174/345 (50%), Positives = 227/345 (65%), Gaps = 17/345 (4%)
Query: 8 IEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGR 67
+ S RY+ WV EALDELP SF +TDP++ GHPIV+ASRG ++G+ E++GRN R
Sbjct: 11 LAASLTARYSDWVVEALDELPGSFILTDPAMPGHPIVYASRGLASLTGYPPREVLGRNAR 70
Query: 68 MFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
+FQG T+R + +REA+R +RP +V++LNY++DG W+L ++ VF DGR HF+
Sbjct: 71 LFQGADTDRAAVAGVREAVRGQRPHQVSILNYRRDGEAHWVLLHLAPVFHASDGRVLHFL 130
Query: 128 AVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREV-------CSDSLLDLDRVLA 180
AVQVPI R + + +VF +CR E C+ ++
Sbjct: 131 AVQVPIAPPASRRRTPPCRAARP------PVVFAACREEARVEEECPCASHAGEV----F 180
Query: 181 LDSDDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFIS 240
+D D G + E+ AS+ EK KA + ++I S L YS+LTG +VCGKRC G+ +S
Sbjct: 181 VDVDKRGQDAEEPRVASEHEKEKALSTANSIFSALNRYSKLTGLVVCGKRCDSVGIPALS 240
Query: 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTT 300
SSL +SLGRIKQSFVL DPHLPDMP++YASDAFL LTGY R E++G NCRFLNG T
Sbjct: 241 SSLNLSLGRIKQSFVLTDPHLPDMPIIYASDAFLSLTGYSREEILGCNCRFLNGPGTSVE 300
Query: 301 VLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
VL QI + I +EQACTV +LNYRK SSF +LLHISPIRNASGKV
Sbjct: 301 VLEQINQHICSEQACTVHLLNYRKGGSSFRDLLHISPIRNASGKV 345
>gi|115434972|ref|NP_001042244.1| Os01g0186200 [Oryza sativa Japonica Group]
gi|55295935|dbj|BAD67803.1| putative PHY3 protein [Oryza sativa Japonica Group]
gi|113531775|dbj|BAF04158.1| Os01g0186200 [Oryza sativa Japonica Group]
gi|215766597|dbj|BAG98701.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222617882|gb|EEE54014.1| hypothetical protein OsJ_00672 [Oryza sativa Japonica Group]
Length = 395
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 174/345 (50%), Positives = 227/345 (65%), Gaps = 17/345 (4%)
Query: 8 IEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGR 67
+ S RY+ WV EALDELP SF +TDP++ GHPIV+ASRG ++G+ E++GRN R
Sbjct: 11 LAASLTARYSDWVVEALDELPGSFILTDPAMPGHPIVYASRGLASLTGYPPREVLGRNAR 70
Query: 68 MFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
+FQG T+R + +REA+R +RP +V++LNY++DG W+L ++ VF DGR HF+
Sbjct: 71 LFQGADTDRAAVAGVREAVRGQRPHQVSILNYRRDGEAHWVLLHLAPVFHASDGRVLHFL 130
Query: 128 AVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREV-------CSDSLLDLDRVLA 180
AVQVPI R + + +VF +CR E C+ ++
Sbjct: 131 AVQVPIAPPASRRRTPPCRAARPF------VVFAACREEARVEEECPCASHAGEV----F 180
Query: 181 LDSDDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFIS 240
+D D G + E+ AS+ EK KA + ++I S L YS+LTG +VCGKRC G+ +S
Sbjct: 181 VDVDKRGQDAEEPRVASEHEKEKALSTANSIFSALNRYSKLTGLVVCGKRCDSVGIPALS 240
Query: 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTT 300
SSL +SLGRIKQSFVL DPHLPDMP++YASDAFL LTGY R E++G NCRFLNG T
Sbjct: 241 SSLNLSLGRIKQSFVLTDPHLPDMPIIYASDAFLSLTGYSREEILGCNCRFLNGPGTSVE 300
Query: 301 VLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
VL QI + I +EQACTV +LNYRK SSF +LLHISPIRNASGKV
Sbjct: 301 VLEQINQHICSEQACTVHLLNYRKGGSSFRDLLHISPIRNASGKV 345
>gi|357125813|ref|XP_003564584.1| PREDICTED: protein TWIN LOV 1-like [Brachypodium distachyon]
Length = 396
Score = 313 bits (802), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 170/342 (49%), Positives = 221/342 (64%), Gaps = 13/342 (3%)
Query: 7 LIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNG 66
L+ S RY+ WV E LDELP SF +TDP++SGHPIV+ASRG ++G+ +++GRN
Sbjct: 15 LLAASLTARYSDWVLEELDELPGSFLLTDPAMSGHPIVYASRGLASLTGYRPRDVLGRNA 74
Query: 67 RMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHF 126
R+FQG T+R + +R+A+R +R +V +LNY++DG P W+L ++ VF DGR HF
Sbjct: 75 RLFQGAATDRAAVAGVRDAVRCQRAHQVAILNYRRDGAPHWVLLHVAPVFHAHDGRVLHF 134
Query: 127 VAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLA---LDS 183
+AVQVPI + R + VF +CR E + L +D
Sbjct: 135 LAVQVPIAAAPRRRAAPCRRPP----------VFAACREEARVEEELPCASHAGEAFVDI 184
Query: 184 DDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSL 243
D GLE + AS +K KA + ++I S L YS+LTG +VCGKRC G+ +SSSL
Sbjct: 185 DKRGLEAGEPRVASGCDKEKALSTANSIFSALNRYSKLTGLVVCGKRCDSAGIPALSSSL 244
Query: 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLY 303
+SLGRIKQSFVL D HLPDMP+VYASDAFL LTGY R E++G NCRFLNG T VL
Sbjct: 245 NLSLGRIKQSFVLTDRHLPDMPVVYASDAFLSLTGYSREEILGCNCRFLNGPGTSLEVLE 304
Query: 304 QIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I +I EQACTV +LNYRKD +F +LLH+SPIRNASGKV
Sbjct: 305 EINRNICCEQACTVHLLNYRKDGLAFPDLLHVSPIRNASGKV 346
>gi|147765804|emb|CAN75623.1| hypothetical protein VITISV_039336 [Vitis vinifera]
Length = 439
Score = 307 bits (786), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 160/249 (64%), Positives = 191/249 (76%), Gaps = 10/249 (4%)
Query: 38 ISGHPIVF---ASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94
I G+PI + FLKMSG+S+ E+IG+NGR FQGP T+RR+I EI+EAI+EER I+
Sbjct: 70 IRGYPITLLDHEAGEFLKMSGYSKEEVIGKNGRAFQGPGTSRRSITEIQEAIQEERTIQT 129
Query: 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDG---G 151
LLNY+KDGTP WMLF MS VF KEDGR HFVAVQVP+ SRK R SG DG
Sbjct: 130 ILLNYRKDGTPIWMLFHMSPVFSKEDGRVIHFVAVQVPM-SRKP-RXSGSGPGRDGVCED 187
Query: 152 GSRLREIVFGSCRREVCSDSLLDLDRVLALDS--DDTGLEIEDSCEASDLEKRKAATAID 209
G R R+IVFGSCRREVCSDS+L+L+ VLA +S D + E+ EASD EKR+AA A++
Sbjct: 188 GCRSRDIVFGSCRREVCSDSVLELEHVLAFESLFDSDNRDDEEPREASDQEKRRAAAAVN 247
Query: 210 NILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYA 269
NILS+LTHYS+LTG+LVC KRC L G+G + +SL ISLGRIKQSFVL DPHLP+MP+ YA
Sbjct: 248 NILSLLTHYSELTGKLVCEKRCXLSGIGLLGASLIISLGRIKQSFVLTDPHLPEMPIAYA 307
Query: 270 SDAFLKLTG 278
SDAFLKLTG
Sbjct: 308 SDAFLKLTG 316
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 256 LIDPHLPDMPMV---YASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
I H+ P+ + + FLK++GY + EV+G+N R G T + +I+E+IQ E
Sbjct: 65 FIWAHIRGYPITLLDHEAGEFLKMSGYSKEEVIGKNGRAFQGPGTSRRSITEIQEAIQEE 124
Query: 313 QACTVRILNYRKDKSSFWNLLHISPI 338
+ +LNYRKD + W L H+SP+
Sbjct: 125 RTIQTILLNYRKDGTPIWMLFHMSPV 150
>gi|194703998|gb|ACF86083.1| unknown [Zea mays]
gi|414875957|tpg|DAA53088.1| TPA: hypothetical protein ZEAMMB73_525936 [Zea mays]
Length = 402
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 161/340 (47%), Positives = 215/340 (63%), Gaps = 15/340 (4%)
Query: 11 SFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQ 70
S RY+ WV E LDELP SF +TDP++ GHPIV+ASRG ++G++ +++GRN R+FQ
Sbjct: 23 SLTARYSDWVLETLDELPGSFLLTDPALPGHPIVYASRGLAALTGYAPRDVLGRNARLFQ 82
Query: 71 GPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
G T+R T+ +REA+R RP + +LNY++DG P W+L ++ +F DG HF+AVQ
Sbjct: 83 GAATDRATVAGVREAVRAHRPHQAAILNYRRDGAPHWVLLHLAPLFHARDGTLLHFLAVQ 142
Query: 131 VPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRRE---VCSD--SLLDLDRVLALDSDD 185
VPI R G + +CR E V D +V +D D
Sbjct: 143 VPIAPAAVAR---------GATCHTTGHLLAACRDEASRVAEDFPCATHAGKVF-VDMDK 192
Query: 186 TGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYI 245
GLE E+ SD EK A + ++I+S L YS+LTG +V KRC G+ +SSSL +
Sbjct: 193 RGLETEEPRVPSDSEKDMAISTANSIVSALNSYSKLTGLVVSRKRCDSIGIPALSSSLKL 252
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
SLGRIKQSFVL D LP+MP++YASDAF LTGY R E++G NC+ LNG T VL +I
Sbjct: 253 SLGRIKQSFVLTDSRLPNMPIIYASDAFTSLTGYSREEILGCNCKVLNGPGTSLEVLEEI 312
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ I +EQACTV +L+YRKD SSF + LH+SPIR+ASGKV
Sbjct: 313 NQHICSEQACTVDLLSYRKDGSSFCDHLHVSPIRDASGKV 352
>gi|302797635|ref|XP_002980578.1| hypothetical protein SELMODRAFT_112753 [Selaginella moellendorffii]
gi|300151584|gb|EFJ18229.1| hypothetical protein SELMODRAFT_112753 [Selaginella moellendorffii]
Length = 374
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 151/356 (42%), Positives = 206/356 (57%), Gaps = 45/356 (12%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAE 60
M + ++ QS Y + + L + +F + DP + HPIV+AS GFL+M+G+SR E
Sbjct: 1 MKNHKLIVSQSLIRSYRASIQDELQKHAYNFVLCDPGLPDHPIVYASDGFLEMTGYSRDE 60
Query: 61 IIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED 120
++GRN R QG T++R I+EIREAIREER ++ +LNY K G PFW LF ++ VF ++D
Sbjct: 61 VLGRNCRFLQGRDTDKRAIVEIREAIREERDCQIKILNYTKAGKPFWNLFHLAPVFSQQD 120
Query: 121 GRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLA 180
GR HFV VQ+PI S+ R G L L+ L+
Sbjct: 121 GRVVHFVGVQLPISSKLAARKDG---------------------------HLTGLE--LS 151
Query: 181 LDSDDTGLEIED-----SCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCS--- 232
D LE E+ SC+ L + A + +VL + + + V R
Sbjct: 152 FDE----LEFEEHFDNPSCKNYHLSEEDKQRAFAAVKAVLQELANSSCKGVSSMRSKSFS 207
Query: 233 ---LPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNC 289
+P GF+++SL ++L RI SFVL DPHLPDMP+V+AS FL+LTGY R EV+G+NC
Sbjct: 208 EGVIPP-GFVATSLLLALTRIPHSFVLTDPHLPDMPIVHASLEFLELTGYTREEVIGRNC 266
Query: 290 RFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
RFL G DTD + +++ SI Q CTVRILNYRK+K FWN LHISP+RN+SGKV
Sbjct: 267 RFLQGPDTDLAPIEELRSSISEGQTCTVRILNYRKNKEPFWNSLHISPVRNSSGKV 322
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 10/136 (7%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +P SF +TDP + PIV AS FL+++G++R E+IGRN R QGP T+ I E+
Sbjct: 223 ALTRIPHSFVLTDPHLPDMPIVHASLEFLELTGYTREEVIGRNCRFLQGPDTDLAPIEEL 282
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R +I E + V +LNY+K+ PFW +S V G+ ++ +QV +
Sbjct: 283 RSSISEGQTCTVRILNYRKNKEPFWNSLHISPV-RNSSGKVAYYAGIQVAV--------- 332
Query: 143 GMSYSEDGGGSRLREI 158
S ED G +R++++
Sbjct: 333 SHSSEEDEGRARMQQL 348
>gi|302790163|ref|XP_002976849.1| hypothetical protein SELMODRAFT_443359 [Selaginella moellendorffii]
gi|300155327|gb|EFJ21959.1| hypothetical protein SELMODRAFT_443359 [Selaginella moellendorffii]
Length = 394
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 150/356 (42%), Positives = 206/356 (57%), Gaps = 45/356 (12%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAE 60
M + ++ QS Y + + L + +F + DP + HPIV+AS GFL+M+G+SR E
Sbjct: 21 MKNHKLIVSQSLIRSYRASIQDELQKHAYNFVLCDPGLPDHPIVYASDGFLEMTGYSRDE 80
Query: 61 IIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED 120
++GRN R QG T++R I+EIREAIREER ++ +LNY K G PFW LF ++ VF ++D
Sbjct: 81 VLGRNCRFLQGRDTDKRAIVEIREAIREERDCQIKILNYTKAGKPFWNLFHLAPVFSQQD 140
Query: 121 GRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLA 180
GR HFV VQ+PI S+ R G L L+ L+
Sbjct: 141 GRVVHFVGVQLPISSKVAARKDG---------------------------HLTGLE--LS 171
Query: 181 LDSDDTGLEIED-----SCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCS--- 232
D LE E+ SC+ L + A + +VL + + + V R
Sbjct: 172 FDE----LEFEEHFDNPSCKNYHLSEEDKQRAFAAVKAVLQELANSSCKGVSSMRSKSFS 227
Query: 233 ---LPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNC 289
+P GF+++SL ++L RI SFVL DPHLPDMP+V+AS FL+LTGY R EV+G+NC
Sbjct: 228 EGVIPP-GFVATSLLLALTRIPHSFVLTDPHLPDMPIVHASLEFLELTGYTREEVIGRNC 286
Query: 290 RFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
RFL G DTD + +++ SI Q CT+RILNYRK+K FWN LHISP+RN+SGKV
Sbjct: 287 RFLQGPDTDLAPIEELRSSISEGQTCTIRILNYRKNKEPFWNSLHISPVRNSSGKV 342
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 77/136 (56%), Gaps = 10/136 (7%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +P SF +TDP + PIV AS FL+++G++R E+IGRN R QGP T+ I E+
Sbjct: 243 ALTRIPHSFVLTDPHLPDMPIVHASLEFLELTGYTREEVIGRNCRFLQGPDTDLAPIEEL 302
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R +I E + + +LNY+K+ PFW +S V G+ ++ +QV +
Sbjct: 303 RSSISEGQTCTIRILNYRKNKEPFWNSLHISPV-RNSSGKVAYYAGIQVAV--------- 352
Query: 143 GMSYSEDGGGSRLREI 158
S ED G +R++++
Sbjct: 353 SHSSEEDEGRARMQQL 368
>gi|168047069|ref|XP_001775994.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672652|gb|EDQ59186.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 406
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 158/342 (46%), Positives = 209/342 (61%), Gaps = 24/342 (7%)
Query: 11 SFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQ 70
S + Y + + L + +F ++DP + HPIVFAS GFL+MSG+ R E++GRN R Q
Sbjct: 29 SLSRAYNEKIGQVLQQHEYNFVLSDPRLPDHPIVFASEGFLRMSGYDREEVLGRNCRFLQ 88
Query: 71 GPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
GP T+R T++EIR+AIREER +V +LNY K G PFW LF M+ +F DGR H+V VQ
Sbjct: 89 GPDTDRGTVVEIRDAIREERACQVRILNYTKQGEPFWNLFHMAPIFSN-DGRVIHYVGVQ 147
Query: 131 VPIVSRKHMRNSGMSYS---EDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTG 187
PI K + + ++ + EDG E S DL R +L S D
Sbjct: 148 TPIA--KDLLSEAVTAALPAEDGSSVPAEE-------------SAADL-RGDSLHSPDES 191
Query: 188 LEIEDSCE-ASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSL---PGMGFISSSL 243
E E +D K KAA A+ + LT S++ G L +R L G +SSSL
Sbjct: 192 SEDEAMPSFVNDDVKEKAAVAVQTVTGELTRSSRVKGALEQNRRIGLSECAAKGVVSSSL 251
Query: 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLY 303
+SL RI+QS VL DP LPD P+V+ASD F +LTGY R EVVG+NCRFL G DTD +
Sbjct: 252 LLSLTRIQQSLVLADPSLPDTPIVHASDVFCELTGYSREEVVGRNCRFLQGPDTDPESVR 311
Query: 304 QIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+E+IQ E+ CTVRILNYRKD + FWN LH++P+R+A+GKV
Sbjct: 312 EIREAIQAERPCTVRILNYRKDDTPFWNHLHVAPVRSATGKV 353
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 72/94 (76%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
+FVL DP LPD P+V+AS+ FL+++GYDR EV+G+NCRFL G DTD + +I+++I+ E
Sbjct: 48 NFVLSDPRLPDHPIVFASEGFLRMSGYDREEVLGRNCRFLQGPDTDRGTVVEIRDAIREE 107
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+AC VRILNY K FWNL H++PI + G+V+
Sbjct: 108 RACQVRILNYTKQGEPFWNLFHMAPIFSNDGRVI 141
>gi|311692314|dbj|BAJ24888.1| LOV/LOV protein 2 [Physcomitrella patens]
Length = 437
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 158/349 (45%), Positives = 210/349 (60%), Gaps = 23/349 (6%)
Query: 11 SFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQ 70
S + Y + + L + +F ++DP + HPIVFAS GFL+MSG+ R E++GRN R Q
Sbjct: 45 SLSRAYNEKIGQVLQQHEYNFVLSDPRLPDHPIVFASEGFLRMSGYDREEVLGRNCRFLQ 104
Query: 71 GPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
GP T+R T++EIR+AIREER +V +LNY K G PFW LF M+ +F DGR H+V VQ
Sbjct: 105 GPDTDRGTVVEIRDAIREERACQVRILNYTKQGEPFWNLFHMAPIFSN-DGRVIHYVGVQ 163
Query: 131 VPIVSRKHMRNSGMSYS---EDGGGSRLREIVFGSCRREVCSDSLLDLD--------RVL 179
PI K + + ++ + EDG E ++ DSL D R
Sbjct: 164 TPIA--KDLLSEAVTAALPAEDGSSVPAEESAA-----DLRGDSLHSPDESSVNMRLRGG 216
Query: 180 ALDSDDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSL---PGM 236
A D E S D+ K KAA A+ + LT S++ G L +R L
Sbjct: 217 ATSHADEEDEAMPSFVNDDV-KEKAAVAVQTVTGELTRSSRVKGALEQNRRIGLSECAAK 275
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G +SSSL +SL RI+QS VL DP LPD P+V+ASD F +LTGY R EVVG+NCRFL G D
Sbjct: 276 GVVSSSLLLSLTRIQQSLVLADPSLPDTPIVHASDVFCELTGYSREEVVGRNCRFLQGPD 335
Query: 297 TDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TD + +I+E+IQ E+ CTVRILNYRKD + FWN LH++P+R+A+GKV
Sbjct: 336 TDPESVREIREAIQAERPCTVRILNYRKDDTPFWNHLHVAPVRSATGKV 384
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 72/94 (76%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
+FVL DP LPD P+V+AS+ FL+++GYDR EV+G+NCRFL G DTD + +I+++I+ E
Sbjct: 64 NFVLSDPRLPDHPIVFASEGFLRMSGYDREEVLGRNCRFLQGPDTDRGTVVEIRDAIREE 123
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+AC VRILNY K FWNL H++PI + G+V+
Sbjct: 124 RACQVRILNYTKQGEPFWNLFHMAPIFSNDGRVI 157
>gi|311692312|dbj|BAJ24887.1| LOV/LOV protein 1 [Physcomitrella patens]
Length = 435
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 152/351 (43%), Positives = 210/351 (59%), Gaps = 32/351 (9%)
Query: 11 SFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQ 70
S + Y V +AL + +F ++DP + HPIVFAS GFL+MS + R E++GRN R Q
Sbjct: 47 SLSRAYNEKVGQALGQHEYNFVLSDPRLPDHPIVFASEGFLRMSRYERDEVVGRNCRFLQ 106
Query: 71 GPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
GP T+RRT++EIR+AIREER +V +LNY K PFW LF M+ +F DG+ H+V VQ
Sbjct: 107 GPDTDRRTVVEIRDAIREERACQVLILNYTKYKEPFWNLFHMAPIFSS-DGQVIHYVGVQ 165
Query: 131 VPIVSR----------KHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLA 180
PI M +S +S E +RL SC E D+L
Sbjct: 166 TPIADDLASQALLSELPAMNDSFLSAKEYTDVARL-----DSC--ESTHDNLSK------ 212
Query: 181 LDSDDTGLEIEDS---CEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSL---P 234
S G ++ED ++ +KA A++ + S LT S++ G L +R L
Sbjct: 213 --SSSRGRDVEDEDSLFPVNEGVNQKATLAVEKVTSELTQLSRVKGALEKNRRVGLSESA 270
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G +SSSL +SL RI+QS +L DP+LPD P+V+ASD F +LTGY R EVVG+NCRFL G
Sbjct: 271 AKGVVSSSLMLSLTRIQQSLILSDPNLPDTPIVHASDVFCELTGYSREEVVGRNCRFLQG 330
Query: 295 VDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
DTD + +I+E+I+ E+ TVRILNY+KD + FWN LH++P+R+A+G V
Sbjct: 331 PDTDPEAVREIREAIKAERPYTVRILNYKKDNTPFWNHLHVAPVRSATGGV 381
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 78/101 (77%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+LG+ + +FVL DP LPD P+V+AS+ FL+++ Y+R+EVVG+NCRFL G DTD + +I
Sbjct: 59 ALGQHEYNFVLSDPRLPDHPIVFASEGFLRMSRYERDEVVGRNCRFLQGPDTDRRTVVEI 118
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+++I+ E+AC V ILNY K K FWNL H++PI ++ G+V+
Sbjct: 119 RDAIREERACQVLILNYTKYKEPFWNLFHMAPIFSSDGQVI 159
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 82/144 (56%), Gaps = 8/144 (5%)
Query: 4 QLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIG 63
++GL E + + + +L + S ++DP++ PIV AS F +++G+SR E++G
Sbjct: 263 RVGLSESAAKGVVSSSLMLSLTRIQQSLILSDPNLPDTPIVHASDVFCELTGYSREEVVG 322
Query: 64 RNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRA 123
RN R QGP T+ + EIREAI+ ERP V +LNYKKD TPFW ++ V G A
Sbjct: 323 RNCRFLQGPDTDPEAVREIREAIKAERPYTVRILNYKKDNTPFWNHLHVAPVRSATGGVA 382
Query: 124 THFVAVQ-------VPIVSRKHMR 140
+FV VQ VP+V +R
Sbjct: 383 -YFVGVQLNVSEADVPVVQGASLR 405
>gi|168060156|ref|XP_001782064.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666475|gb|EDQ53128.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 327
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 146/337 (43%), Positives = 207/337 (61%), Gaps = 19/337 (5%)
Query: 11 SFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQ 70
S + Y V +AL + +F ++DP + HPIVFAS GFL+MS + R E++GRN R Q
Sbjct: 6 SLSRAYNEKVGQALGQHEYNFVLSDPRLPDHPIVFASEGFLRMSRYERDEVVGRNCRFLQ 65
Query: 71 GPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
GP T+RRT++EIR+AIREER +V +LNY K PFW LF M+ +F DG+ H+V VQ
Sbjct: 66 GPDTDRRTVVEIRDAIREERACQVLILNYTKYKEPFWNLFHMAPIFSS-DGQVIHYVGVQ 124
Query: 131 VPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEI 190
PI ++D L + + + D+ R+ +D T +E
Sbjct: 125 TPI-------------ADDLASQALLSELPAMNDSFLSAKEYTDVARLTLIDCA-TDVED 170
Query: 191 EDSC-EASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSL---PGMGFISSSLYIS 246
EDS ++ +KA A++ + S LT S++ G L +R L G +SSSL +S
Sbjct: 171 EDSLFPVNEGVNQKATLAVEKVTSELTQLSRVKGALEKNRRVGLSESAAKGVVSSSLMLS 230
Query: 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIK 306
L RI+QS +L DP+LPD P+V+ASD F +LTGY R EVVG+NCRFL G DTD + +I+
Sbjct: 231 LTRIQQSLILSDPNLPDTPIVHASDVFCELTGYSREEVVGRNCRFLQGPDTDPEAVREIR 290
Query: 307 ESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
E+I+ E+ TVRILNY+KD + FWN LH++P+R+A+G
Sbjct: 291 EAIKAERPYTVRILNYKKDNTPFWNHLHVAPVRSATG 327
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 78/101 (77%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+LG+ + +FVL DP LPD P+V+AS+ FL+++ Y+R+EVVG+NCRFL G DTD + +I
Sbjct: 18 ALGQHEYNFVLSDPRLPDHPIVFASEGFLRMSRYERDEVVGRNCRFLQGPDTDRRTVVEI 77
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+++I+ E+AC V ILNY K K FWNL H++PI ++ G+V+
Sbjct: 78 RDAIREERACQVLILNYTKYKEPFWNLFHMAPIFSSDGQVI 118
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 66/104 (63%)
Query: 4 QLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIG 63
++GL E + + + +L + S ++DP++ PIV AS F +++G+SR E++G
Sbjct: 211 RVGLSESAAKGVVSSSLMLSLTRIQQSLILSDPNLPDTPIVHASDVFCELTGYSREEVVG 270
Query: 64 RNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFW 107
RN R QGP T+ + EIREAI+ ERP V +LNYKKD TPFW
Sbjct: 271 RNCRFLQGPDTDPEAVREIREAIKAERPYTVRILNYKKDNTPFW 314
>gi|356514312|ref|XP_003525850.1| PREDICTED: LOW QUALITY PROTEIN: protein TWIN LOV 1-like [Glycine
max]
Length = 270
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 137/261 (52%), Positives = 177/261 (67%), Gaps = 18/261 (6%)
Query: 24 LDELP-DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
+ LP +SFTITDPSI GHPIVFA+ FLK++G+S E++G +F GP T+++ +++I
Sbjct: 1 MSSLPSNSFTITDPSIPGHPIVFANPSFLKLTGYSLREVLGWPAAIFSGPLTSQKFVIKI 60
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
E +REER V LLNY +DG PFWMLF +S +F + G HF+ VQVP+ ++
Sbjct: 61 HEIVREERNAXVILLNYHRDGMPFWMLFCVSPIFSSDGGAVVHFIVVQVPLQKKEX---- 116
Query: 143 GMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDS----DDTGLEIEDSCEASD 198
GS +R+ FG R+EVC DSL + DR+ +L+ D LE E+SCEASD
Sbjct: 117 ---------GSGVRDFGFGCYRKEVCVDSLAEXDRICSLEQLLEPDVRELEREESCEASD 167
Query: 199 LEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLID 258
EKR TA+D I SVLTHY + TGRLVC KR S+P +G +S+SL ISLGRIKQSFVL +
Sbjct: 168 DEKRSVVTAMDCIFSVLTHYGEATGRLVCRKRSSIPDVGLLSTSLIISLGRIKQSFVLTN 227
Query: 259 PHLPDMPMVYASDAFLKLTGY 279
PHLPDMP VYASD L LTG+
Sbjct: 228 PHLPDMPTVYASDTLLNLTGF 248
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 53/92 (57%)
Query: 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQT 311
SF + DP +P P+V+A+ +FLKLTGY EV+G +G T + +I E ++
Sbjct: 7 NSFTITDPSIPGHPIVFANPSFLKLTGYSLREVLGWPAAIFSGPLTSQKFVIKIHEIVRE 66
Query: 312 EQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
E+ V +LNY +D FW L +SPI ++ G
Sbjct: 67 ERNAXVILLNYHRDGMPFWMLFCVSPIFSSDG 98
>gi|414875958|tpg|DAA53089.1| TPA: hypothetical protein ZEAMMB73_525936 [Zea mays]
Length = 317
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 135/305 (44%), Positives = 184/305 (60%), Gaps = 15/305 (4%)
Query: 10 QSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMF 69
S RY+ WV E LDELP SF +TDP++ GHPIV+ASRG ++G++ +++GRN R+F
Sbjct: 22 SSLTARYSDWVLETLDELPGSFLLTDPALPGHPIVYASRGLAALTGYAPRDVLGRNARLF 81
Query: 70 QGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAV 129
QG T+R T+ +REA+R RP + +LNY++DG P W+L ++ +F DG HF+AV
Sbjct: 82 QGAATDRATVAGVREAVRAHRPHQAAILNYRRDGAPHWVLLHLAPLFHARDGTLLHFLAV 141
Query: 130 QVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRRE---VCSD--SLLDLDRVLALDSD 184
QVPI R G + +CR E V D +V +D D
Sbjct: 142 QVPIAPAAVAR---------GATCHTTGHLLAACRDEASRVAEDFPCATHAGKVF-VDMD 191
Query: 185 DTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLY 244
GLE E+ SD EK A + ++I+S L YS+LTG +V KRC G+ +SSSL
Sbjct: 192 KRGLETEEPRVPSDSEKDMAISTANSIVSALNSYSKLTGLVVSRKRCDSIGIPALSSSLK 251
Query: 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQ 304
+SLGRIKQSFVL D LP+MP++YASDAF LTGY R E++G NC+ LNG T VL +
Sbjct: 252 LSLGRIKQSFVLTDSRLPNMPIIYASDAFTSLTGYSREEILGCNCKVLNGPGTSLEVLEE 311
Query: 305 IKESI 309
++ I
Sbjct: 312 VRARI 316
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 57/96 (59%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + SF+L DP LP P+VYAS LTGY +V+G+N R G TD + +
Sbjct: 35 TLDELPGSFLLTDPALPGHPIVYASRGLAALTGYAPRDVLGRNARLFQGAATDRATVAGV 94
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNA 341
+E+++ + ILNYR+D + W LLH++P+ +A
Sbjct: 95 REAVRAHRPHQAAILNYRRDGAPHWVLLHLAPLFHA 130
>gi|356561078|ref|XP_003548812.1| PREDICTED: LOW QUALITY PROTEIN: protein TWIN LOV 1-like [Glycine
max]
Length = 254
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/275 (48%), Positives = 172/275 (62%), Gaps = 41/275 (14%)
Query: 8 IEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGR 67
I++SF+ RYT + LDELPDSFT+TDPSI GHPIVFAS GFLK++G+S E++GR
Sbjct: 14 IQRSFDARYTRHTRDLLDELPDSFTVTDPSILGHPIVFASPGFLKLTGYSLREVLGRPTA 73
Query: 68 MFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
+FQGP T ++++EIR+ +REER +V L HFV
Sbjct: 74 IFQGPLTFPKSVIEIRKVVREERNAQVIL-----------------------PKSVVHFV 110
Query: 128 AVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDS---- 183
AV VP+ ++ GS +R+ F C +EVC DSL + D V +L+
Sbjct: 111 AVXVPLQKKE--------------GSGVRDFGFECCXKEVCVDSLAEXDCVCSLEQVPEP 156
Query: 184 DDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSL 243
D +E E+ CEASD EK TA+D+I VLTHYS+ TGRLVC KR ++P +G +S+SL
Sbjct: 157 DVREVEREELCEASDDEKXSVVTAMDSIFYVLTHYSEATGRLVCRKRSNIPDVGLLSTSL 216
Query: 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278
ISLGRIKQSFVL + HLPDMP+VYASD FL+LT
Sbjct: 217 IISLGRIKQSFVLTNLHLPDMPIVYASDTFLELTN 251
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIK 306
L + SF + DP + P+V+AS FLKLTGY EV+G+ G T + +I+
Sbjct: 30 LDELPDSFTVTDPSILGHPIVFASPGFLKLTGYSLREVLGRPTAIFQGPLTFPKSVIEIR 89
Query: 307 ESIQTEQACTV 317
+ ++ E+ V
Sbjct: 90 KVVREERNAQV 100
>gi|384250283|gb|EIE23763.1| putative blue light receptor [Coccomyxa subellipsoidea C-169]
Length = 803
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 118/342 (34%), Positives = 181/342 (52%), Gaps = 40/342 (11%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+F + D ++ P+VFAS GFL M+G+S E++G N R QG T+ + + IR+A+++
Sbjct: 45 TFVVADATLPDCPLVFASEGFLSMTGYSAEEVLGHNCRFLQGEGTDPKEVAIIRDAVKKG 104
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSED 149
V LLNY++DGTPFW L M+ + EDG+ + FV VQV + S+ G ++S+
Sbjct: 105 EGCSVRLLNYRRDGTPFWNLLTMTPI-KTEDGKVSKFVGVQVDVTSK----TEGRAFSDA 159
Query: 150 GG-------GSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDS--------- 193
G +RLRE V + + D L +V + +D+G E +
Sbjct: 160 TGVPLLVKYDTRLRENV----AKNIVQDVTL---QVQEAEEEDSGAASEAARVSSLKGFN 212
Query: 194 ----------CEASDLEKRKAATAIDNILSVLTHYSQLT--GRLVCGKRCSLPGMGFISS 241
L +A D H QL G V K + ++
Sbjct: 213 KLWHKMGNKVTRPQCLGGPPSAPLGDPKAQASAHDPQLQKQGERVGKKMTAPKTFPRVAM 272
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
L ++ RI+Q+F + DP+LPD P+V+ASD FL+++ YDR EV+G+NCRFL G DTD
Sbjct: 273 DLATTVERIQQNFCICDPNLPDNPIVFASDGFLEMSQYDRFEVLGRNCRFLQGPDTDPKA 332
Query: 302 LYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+ I+++I+++ TVRILNYRK FWN+L I+P+ + G
Sbjct: 333 ISIIRDAIKSQSEATVRILNYRKSGQPFWNMLTIAPMADVDG 374
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 69/99 (69%)
Query: 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIK 306
L ++ +FV+ D LPD P+V+AS+ FL +TGY EV+G NCRFL G TD + I+
Sbjct: 39 LAGLRHTFVVADATLPDCPLVFASEGFLSMTGYSAEEVLGHNCRFLQGEGTDPKEVAIIR 98
Query: 307 ESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
++++ + C+VR+LNYR+D + FWNLL ++PI+ GKV
Sbjct: 99 DAVKKGEGCSVRLLNYRRDGTPFWNLLTMTPIKTEDGKV 137
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + ++ + +F I DP++ +PIVFAS GFL+MS + R E++GRN R QGP T
Sbjct: 269 RVAMDLATTVERIQQNFCICDPNLPDNPIVFASDGFLEMSQYDRFEVLGRNCRFLQGPDT 328
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
+ + I IR+AI+ + V +LNY+K G PFW + ++ + DG + F+ VQV +
Sbjct: 329 DPKAISIIRDAIKSQSEATVRILNYRKSGQPFWNMLTIAPM-ADVDGTSRFFIGVQVDVT 387
Query: 135 S 135
+
Sbjct: 388 A 388
>gi|303288491|ref|XP_003063534.1| phototropin, blue light receptor [Micromonas pusilla CCMP1545]
gi|226455366|gb|EEH52670.1| phototropin, blue light receptor [Micromonas pusilla CCMP1545]
Length = 819
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 121/326 (37%), Positives = 179/326 (54%), Gaps = 44/326 (13%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL + +FT++DP++ PIV+AS GFLKM+G+S E+I RN R QG T+R + +I
Sbjct: 39 ALASVRHTFTVSDPTLPDCPIVYASDGFLKMTGYSAEEVINRNCRFLQGEDTDRDDVQKI 98
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM--- 139
R+A+++ + + L NYKKDGTPFW L ++ V EDG F+ VQV + R
Sbjct: 99 RDAVQKGERLTIRLQNYKKDGTPFWNLLTIAPV-KMEDGTVAKFIGVQVDVTDRTEGEVG 157
Query: 140 RNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDL 199
R G DGG V G+ + E L+ D+ L D + G+E D+
Sbjct: 158 RTVG-----DGG-------VVGA-KDEKGLPLLVRYDQRLK-DQNYPGVE--------DV 195
Query: 200 EKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDP 259
EK A + I + T S+ L + ++ RI+QSF++ DP
Sbjct: 196 EK--AVMKGEGIDADATRNSRAREGL----------------DMATTMERIQQSFLISDP 237
Query: 260 HLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRI 319
LPD P+V+ASD FL TGY R E++G+NCRFL G TD + +I+ +I+ + CTVR+
Sbjct: 238 SLPDCPIVFASDGFLDFTGYGREEILGRNCRFLQGAGTDRDAVKEIRNAIKDNRECTVRL 297
Query: 320 LNYRKDKSSFWNLLHISPIRNASGKV 345
LNY K FWN+ ++P+R+ +G+V
Sbjct: 298 LNYTKQGKPFWNMFTLAPVRDHAGEV 323
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 73/106 (68%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S L ++L ++ +F + DP LPD P+VYASD FLK+TGY EV+ +NCRFL G DTD
Sbjct: 33 SKGLTMALASVRHTFTVSDPTLPDCPIVYASDGFLKMTGYSAEEVINRNCRFLQGEDTDR 92
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +I++++Q + T+R+ NY+KD + FWNLL I+P++ G V
Sbjct: 93 DDVQKIRDAVQKGERLTIRLQNYKKDGTPFWNLLTIAPVKMEDGTV 138
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
++ + SF I+DPS+ PIVFAS GFL +G+ R EI+GRN R QG T+R + EIR
Sbjct: 225 MERIQQSFLISDPSLPDCPIVFASDGFLDFTGYGREEILGRNCRFLQGAGTDRDAVKEIR 284
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
AI++ R V LLNY K G PFW +F ++ V G F VQV +
Sbjct: 285 NAIKDNRECTVRLLNYTKQGKPFWNMFTLAPVR-DHAGEVRFFAGVQVDVT 334
>gi|307103015|gb|EFN51280.1| hypothetical protein CHLNCDRAFT_141214 [Chlorella variabilis]
Length = 796
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/320 (34%), Positives = 174/320 (54%), Gaps = 47/320 (14%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +L +F + D ++ P+++AS GF+ M+G+S E++G N R QG T+ + + ++
Sbjct: 32 ALAQLRHTFVVADATLPDCPLIYASEGFVHMTGYSMEEVLGHNCRFLQGEGTDPKDVKKL 91
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R+A+R P+ LLNY+KDGTPFW L M+ + E GR FV VQV + ++
Sbjct: 92 RDAVRNGTPVCTRLLNYRKDGTPFWNLLTMTPI-KDEMGRVIKFVGVQVDVTNK----TE 146
Query: 143 GMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDLEKR 202
G +Y++ G L + DD L++
Sbjct: 147 GRAYTDSAGVPML-------------------------VHYDDR------------LKET 169
Query: 203 KAATAIDNILSVLTHY-SQLTGRLVCGKRC-SLPGMGFISSSLYISLGRIKQSFVLIDPH 260
A +D++L+ + ++ RL G +LP + L ++ RI+ +FV+ DP
Sbjct: 170 VAKPIVDDVLTAVQEADGKVPVRLSRGSPSRALPRVAL---DLATTVERIQSNFVIADPT 226
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320
LPD P+V+ASD FLKLTGY R EV+G+NCRFL G DTD + ++K +I+ + CTVR+L
Sbjct: 227 LPDCPIVFASDPFLKLTGYRREEVLGRNCRFLQGRDTDRATVNELKAAIRAGRECTVRML 286
Query: 321 NYRKDKSSFWNLLHISPIRN 340
NY K FWN+L ++PI++
Sbjct: 287 NYTKAGKPFWNMLTVAPIKD 306
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 73/108 (67%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+ + L +L +++ +FV+ D LPD P++YAS+ F+ +TGY EV+G NCRFL G TD
Sbjct: 25 VKAQLTSALAQLRHTFVVADATLPDCPLIYASEGFVHMTGYSMEEVLGHNCRFLQGEGTD 84
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +++++++ R+LNYRKD + FWNLL ++PI++ G+V+
Sbjct: 85 PKDVKKLRDAVRNGTPVCTRLLNYRKDGTPFWNLLTMTPIKDEMGRVI 132
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R L + ++ + +F I DP++ PIVFAS FLK++G+ R E++GRN R QG T
Sbjct: 204 RVALDLATTVERIQSNFVIADPTLPDCPIVFASDPFLKLTGYRREEVLGRNCRFLQGRDT 263
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+R T+ E++ AIR R V +LNY K G PFW + ++ + E+ R V VQV +
Sbjct: 264 DRATVNELKAAIRAGRECTVRMLNYTKAGKPFWNMLTVAPIKDIEE-RPRFLVGVQVDV 321
>gi|60099458|dbj|BAD89968.1| phototropin [Phaseolus vulgaris]
Length = 996
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 125/391 (31%), Positives = 197/391 (50%), Gaps = 66/391 (16%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + EAL L +F ++D + PI++AS GF M+G+S EIIGRN R QGP T
Sbjct: 182 RVSQELKEALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEIIGRNCRFLQGPDT 241
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
++ + +IR+AIR R LLNYKK+GTPFW L ++ + K+D G F+ +QV +
Sbjct: 242 DKNEVDKIRDAIRNGRSYCGRLLNYKKNGTPFWNLLTVTPI--KDDKGNTIKFIGMQVEV 299
Query: 134 ------VSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTG 187
V+ K +R +G+ S +R +E GS V ++ D ++ +DDT
Sbjct: 300 SKYTEGVNEKALRPNGLPKSLIRYDARQKETAMGSITEVV--QTVKDPKSIINKRNDDTA 357
Query: 188 LEIED------------SCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPG 235
+ E+ S +A + + NI S+ ++ Q R R SL G
Sbjct: 358 SKQEEEEKMNLDFVLPKSADAGNTSTPGRQPSPLNIQSMSSN--QEKSRTSRSGRISLKG 415
Query: 236 MGFISSS-----------------------------------------LYISLGRIKQSF 254
S S L +L RI+++F
Sbjct: 416 FKGKSQSSAGRDEEKTIVEPEVLMTKEIEWSNNWEHSLRERDIRQGIDLATTLERIEKNF 475
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
V+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD + +I+++I+ ++
Sbjct: 476 VISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVSRIRDAIREQRE 535
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV+++NY K FWNL H+ P+R+ G++
Sbjct: 536 ITVQLINYTKSGKKFWNLFHLQPMRDQKGEL 566
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 72/108 (66%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L ++Q+FV+ D PD P++YAS F +TGY E++G+NCRFL G DTD
Sbjct: 183 VSQELKEALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEIIGRNCRFLQGPDTD 242
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+++I+ ++ R+LNY+K+ + FWNLL ++PI++ G +
Sbjct: 243 KNEVDKIRDAIRNGRSYCGRLLNYKKNGTPFWNLLTVTPIKDDKGNTI 290
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 72/109 (66%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F I+DP + +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ I
Sbjct: 467 TLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVSRI 526
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R+AIRE+R I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 527 RDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 574
>gi|302837812|ref|XP_002950465.1| phototropin [Volvox carteri f. nagariensis]
gi|300264470|gb|EFJ48666.1| phototropin [Volvox carteri f. nagariensis]
Length = 744
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 112/331 (33%), Positives = 174/331 (52%), Gaps = 43/331 (12%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+ L L +F + D ++ P+V+AS GF M+G+ E++G N R QG T+ + + +
Sbjct: 13 KVLAGLRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQK 72
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
IREAI++ V LLNY+KDGTPFW L ++ + DG+ + FV VQV + S+
Sbjct: 73 IREAIKKGEACSVRLLNYRKDGTPFWNLLTVTPI-KTPDGKVSKFVGVQVDVTSK----T 127
Query: 142 SGMSYSEDGG-------GSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSC 194
G + +++ G RLRE V +++ D + +++ ++ +
Sbjct: 128 EGKALADNSGVPLLVKYDHRLRENV----AKKIVDDVTIAVEKAEGVEPGAASAAATAAG 183
Query: 195 EASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSF 254
+ R AA S P + L ++ RI+Q+F
Sbjct: 184 QGKPQGVRGAAPK------------------------SFPRVAL---DLATTVERIQQNF 216
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
V+ DP LPD P+V+ASDAFL+LTGY R +V+G+NCRFL G TD+ + QI+E+I+T
Sbjct: 217 VISDPTLPDCPIVFASDAFLELTGYSREDVLGRNCRFLQGPGTDSATVDQIREAIRTGTE 276
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TVRILNY K FWN+ ++P+R+ G V
Sbjct: 277 ITVRILNYTKQGRPFWNMFTMAPMRDQDGSV 307
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 77/113 (68%)
Query: 233 LPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFL 292
+ G+ +S L L ++ +FV+ D LPD P+VYAS+ F +TGY +EV+G NCRFL
Sbjct: 1 MAGVPSPASQLTKVLAGLRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFL 60
Query: 293 NGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
G TD + +I+E+I+ +AC+VR+LNYRKD + FWNLL ++PI+ GKV
Sbjct: 61 QGEGTDPKEVQKIREAIKKGEACSVRLLNYRKDGTPFWNLLTVTPIKTPDGKV 113
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 81/131 (61%), Gaps = 2/131 (1%)
Query: 6 GLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN 65
G +SF R L + ++ + +F I+DP++ PIVFAS FL+++G+SR +++GRN
Sbjct: 192 GAAPKSFP-RVALDLATTVERIQQNFVISDPTLPDCPIVFASDAFLELTGYSREDVLGRN 250
Query: 66 GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATH 125
R QGP T+ T+ +IREAIR I V +LNY K G PFW +F M+ + +DG
Sbjct: 251 CRFLQGPGTDSATVDQIREAIRTGTEITVRILNYTKQGRPFWNMFTMAPMR-DQDGSVRF 309
Query: 126 FVAVQVPIVSR 136
FV VQV + ++
Sbjct: 310 FVGVQVDVTAQ 320
>gi|55295936|dbj|BAD67804.1| putative phototropin [Oryza sativa Japonica Group]
gi|215767136|dbj|BAG99364.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 218
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 101/160 (63%), Positives = 120/160 (75%)
Query: 186 TGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYI 245
G + E+ AS+ EK KA + ++I S L YS+LTG +VCGKRC G+ +SSSL +
Sbjct: 9 AGQDAEEPRVASEHEKEKALSTANSIFSALNRYSKLTGLVVCGKRCDSVGIPALSSSLNL 68
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
SLGRIKQSFVL DPHLPDMP++YASDAFL LTGY R E++G NCRFLNG T VL QI
Sbjct: 69 SLGRIKQSFVLTDPHLPDMPIIYASDAFLSLTGYSREEILGCNCRFLNGPGTSVEVLEQI 128
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ I +EQACTV +LNYRK SSF +LLHISPIRNASGKV
Sbjct: 129 NQHICSEQACTVHLLNYRKGGSSFRDLLHISPIRNASGKV 168
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 56/99 (56%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
+ SF +TDP + PI++AS FL ++G+SR EI+G N R GP T+ + +I + I
Sbjct: 73 IKQSFVLTDPHLPDMPIIYASDAFLSLTGYSREEILGCNCRFLNGPGTSVEVLEQINQHI 132
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATH 125
E+ V+LLNY+K G+ F L +S + A H
Sbjct: 133 CSEQACTVHLLNYRKGGSSFRDLLHISPIRNASGKVAFH 171
>gi|308812864|ref|XP_003083739.1| putative blue light receptor (ISS) [Ostreococcus tauri]
gi|116055620|emb|CAL58288.1| putative blue light receptor (ISS) [Ostreococcus tauri]
Length = 738
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 112/328 (34%), Positives = 165/328 (50%), Gaps = 52/328 (15%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V A +FT+ D + PIV+AS GFL+M+G++ AE+IG N R QG +TN+ +
Sbjct: 20 VARAFGAFDHTFTVCDATKPDCPIVYASDGFLRMTGYAAAEVIGYNCRFLQGEKTNKNDV 79
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
E+REAI+ V LLNYKKDGTPFW ++ V DG ++ VQ
Sbjct: 80 RELREAIKNGDRWSVRLLNYKKDGTPFWNYLVVAPV-KLADGTVVKYIGVQT-------- 130
Query: 140 RNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEA--S 197
D+ V D+ + G+E ++ + S
Sbjct: 131 ----------------------------------DVTEVKDADTGERGIEFDEKGQPVPS 156
Query: 198 DLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLI 257
+ R AA + + V G +R + GM S+ L RI+QSFV+
Sbjct: 157 RYDARAAAATLGRVSEVEQAVRTAEGLGNQAQRRT--GMDLAST-----LERIEQSFVIT 209
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTV 317
DP LPD P+V+ASD F++ TGY +E++G+NCRFL G TD + +I+E+I+ + CTV
Sbjct: 210 DPSLPDHPIVFASDGFMEFTGYSVDEILGRNCRFLQGPKTDRAAVAKIREAIENGEECTV 269
Query: 318 RILNYRKDKSSFWNLLHISPIRNASGKV 345
R+LNY K FWN+ ++P+R+ G V
Sbjct: 270 RLLNYTKTGEEFWNMFTLAPVRDEQGIV 297
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 69/112 (61%), Gaps = 1/112 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + SF ITDPS+ HPIVFAS GF++ +G+S EI+GRN R QGP+T+R + +IR
Sbjct: 199 LERIEQSFVITDPSLPDHPIVFASDGFMEFTGYSVDEILGRNCRFLQGPKTDRAAVAKIR 258
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
EAI V LLNY K G FW +F ++ V E G F VQV I +
Sbjct: 259 EAIENGEECTVRLLNYTKTGEEFWNMFTLAPV-RDEQGIVRFFAGVQVDITA 309
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 66/101 (65%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+ G +F + D PD P+VYASD FL++TGY EV+G NCRFL G T+ + ++
Sbjct: 23 AFGAFDHTFTVCDATKPDCPIVYASDGFLRMTGYAAAEVIGYNCRFLQGEKTNKNDVREL 82
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+E+I+ +VR+LNY+KD + FWN L ++P++ A G V+
Sbjct: 83 REAIKNGDRWSVRLLNYKKDGTPFWNYLVVAPVKLADGTVV 123
>gi|255088732|ref|XP_002506288.1| blue light receptor [Micromonas sp. RCC299]
gi|226521560|gb|ACO67546.1| blue light receptor [Micromonas sp. RCC299]
Length = 870
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/324 (35%), Positives = 162/324 (50%), Gaps = 46/324 (14%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL L +FT+ DP++ PIV+AS GFLKM+G+ E++ RN R QG TN + +I
Sbjct: 55 ALASLRHTFTVCDPTLPDCPIVYASDGFLKMTGYPAEEVLNRNCRFLQGEETNMDDVRKI 114
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
EA+++ I V LLNY+KDG FW L ++ V DG F+ VQV + R
Sbjct: 115 SEAVKKGERITVRLLNYRKDGQKFWNLLTVAPV-KLPDGTVAKFIGVQVDVSDRTEGNAD 173
Query: 143 GMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDLEKR 202
+ +D G L L D L+ ++ D+EK
Sbjct: 174 NSAAMKDTKGLPL-------------------------LVKYDQRLKDQNFNRVDDVEK- 207
Query: 203 KAATAIDNILSVLTHYS-QLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHL 261
+VLT L V R L + +L RI+QSFV+ DP L
Sbjct: 208 ----------AVLTGEGVDLDANPVAANRGGL--------DMATTLERIQQSFVIADPSL 249
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILN 321
PD P+V+ASD FL TGY R E++G+NCRFL G TD + + +I+++I CTVR+LN
Sbjct: 250 PDCPIVFASDGFLDFTGYTREEILGRNCRFLQGPRTDRSAVAEIRKAIDEGSECTVRLLN 309
Query: 322 YRKDKSSFWNLLHISPIRNASGKV 345
Y K FWN+ ++P+R+ G V
Sbjct: 310 YTKQGKPFWNMFTMAPVRDEQGNV 333
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 71/106 (66%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S L +L ++ +F + DP LPD P+VYASD FLK+TGY EV+ +NCRFL G +T+
Sbjct: 49 SKDLTNALASLRHTFTVCDPTLPDCPIVYASDGFLKMTGYPAEEVLNRNCRFLQGEETNM 108
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +I E+++ + TVR+LNYRKD FWNLL ++P++ G V
Sbjct: 109 DDVRKISEAVKKGERITVRLLNYRKDGQKFWNLLTVAPVKLPDGTV 154
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Query: 14 NRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPR 73
NR L + L+ + SF I DPS+ PIVFAS GFL +G++R EI+GRN R QGPR
Sbjct: 225 NRGGLDMATTLERIQQSFVIADPSLPDCPIVFASDGFLDFTGYTREEILGRNCRFLQGPR 284
Query: 74 TNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
T+R + EIR+AI E V LLNY K G PFW +F M+ V E G F VQV +
Sbjct: 285 TDRSAVAEIRKAIDEGSECTVRLLNYTKQGKPFWNMFTMAPV-RDEQGNVRFFAGVQVDV 343
Query: 134 V 134
Sbjct: 344 T 344
>gi|148907121|gb|ABR16704.1| unknown [Picea sitchensis]
Length = 272
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/232 (45%), Positives = 143/232 (61%), Gaps = 16/232 (6%)
Query: 7 LIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNG 66
LIE+S N RY+ + EAL ++ +F ITDP + HPIV+AS+GFLKMSG+S E++GRN
Sbjct: 21 LIEESLNIRYSDGIREALGQVHFNFVITDPCLLDHPIVYASQGFLKMSGYSTEEVVGRNV 80
Query: 67 RMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHF 126
R QGP T+RRT++ IREAIREE+ +V++LNYKK+GT FW LF ++ VF + DGR HF
Sbjct: 81 RFLQGPDTDRRTVLTIREAIREEKSCQVSILNYKKNGTAFWNLFHLAPVFSEGDGRVIHF 140
Query: 127 VAVQVPI----------VSRKHMRNSGMSYSEDG--GGSRLREIVFGSCRREVCSDSLLD 174
V VQ PI N+ ++ E+ I FGSCRRE+ S+ +D
Sbjct: 141 VGVQTPISKFSRSSVSNNVSCSRPNNCPAFVENMLFNHHTSSAIYFGSCRRELFSNFSVD 200
Query: 175 LDRVLALDS----DDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLT 222
L +S D+ GLE E +CEA + +K+KA A IL LT +S+ T
Sbjct: 201 LGHSGLYNSLAEEDNAGLEEEPTCEAKESDKQKAIAAATRILFELTQFSKHT 252
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 73/102 (71%), Gaps = 1/102 (0%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+LG++ +FV+ DP L D P+VYAS FLK++GY EVVG+N RFL G DTD + I
Sbjct: 37 ALGQVHFNFVITDPCLLDHPIVYASQGFLKMSGYSTEEVVGRNVRFLQGPDTDRRTVLTI 96
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPI-RNASGKVL 346
+E+I+ E++C V ILNY+K+ ++FWNL H++P+ G+V+
Sbjct: 97 REAIREEKSCQVSILNYKKNGTAFWNLFHLAPVFSEGDGRVI 138
>gi|20260484|gb|AAM13140.1| unknown protein [Arabidopsis thaliana]
gi|31711968|gb|AAP68340.1| At5g58140 [Arabidopsis thaliana]
Length = 549
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 121/370 (32%), Positives = 194/370 (52%), Gaps = 45/370 (12%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + AL L +F ++D + PIV+AS GF M+G+S EI+GRN R QGP T
Sbjct: 119 RVSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDT 178
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
++ + +IR+ ++ + LLNYKKDGTPFW L ++ + K+D G F+ +QV +
Sbjct: 179 DKNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPI--KDDQGNTIKFIGMQVEV 236
Query: 134 ------VSRKHMRNSGMSYSEDGGGSRLREIVFGSC---------RREVCSDSLLDLDRV 178
V+ K +R +G+S S +R +E S R+ +S+ + D +
Sbjct: 237 SKYTEGVNDKALRPNGLSKSLIRYDARQKEKALDSITEVVQTIRHRKSQVQESVSN-DTM 295
Query: 179 LALDSDDT---GLEIEDSCEASDL------------EKRKAATAIDNILSVLTHYSQLTG 223
+ DS T G + S EAS K K++ L + +
Sbjct: 296 VKPDSSTTPTPGRQTRQSDEASKSFRTPGRVSTPTGSKLKSSNNRHEDLLRMEPEELMLS 355
Query: 224 RLVCGKRCSLP--------GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLK 275
V G+R S G L +L RI+++FV+ DP LPD P+++ASD+FL+
Sbjct: 356 TEVIGQRDSWDLSDRERDIRQGI---DLATTLERIEKNFVISDPRLPDNPIIFASDSFLE 412
Query: 276 LTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHI 335
LT Y R E++G+NCRFL G +TD + +I+++I+ ++ TV+++NY K FWNL H+
Sbjct: 413 LTEYSREEILGRNCRFLQGPETDQATVQKIRDAIRDQREITVQLINYTKSGKKFWNLFHL 472
Query: 336 SPIRNASGKV 345
P+R+ G++
Sbjct: 473 QPMRDQKGEL 482
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 70/108 (64%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L ++Q+FV+ D P P+VYAS F +TGY E+VG+NCRFL G DTD
Sbjct: 120 VSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTD 179
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I++ ++ ++ R+LNY+KD + FWNLL ++PI++ G +
Sbjct: 180 KNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDQGNTI 227
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F I+DP + +PI+FAS FL+++ +SR EI+GRN R QGP T++ T+ +I
Sbjct: 383 TLERIEKNFVISDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDQATVQKI 442
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R+AIR++R I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 443 RDAIRDQREITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 490
>gi|412985223|emb|CCO20248.1| phototropin [Bathycoccus prasinos]
Length = 888
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 117/327 (35%), Positives = 171/327 (52%), Gaps = 42/327 (12%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V +AL L +FT+ D + PIV+AS FL+M+G+ EII N R QG T+ ++
Sbjct: 68 VAQALATLRHTFTVCDATAPDCPIVYASDSFLQMTGYPSEEIIHHNCRFLQGKDTDPESV 127
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
++R+A++ + V LLNY+KDGTPFW ++ V DG ++ VQV V+ K
Sbjct: 128 KKLRDAVKAGERVSVRLLNYRKDGTPFWNYLTIAPV-KLADGTVVKYIGVQVD-VTDKTE 185
Query: 140 RNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSC-EASD 198
N S +D G L L+ D LA + E+E++ A+
Sbjct: 186 GNVAPSVLKDNDGFPL----------------LVRYDARLAAQNLGAFTEVEEAVLSATG 229
Query: 199 LEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLID 258
L K++ + D+ LT S GM S+ L RI++SFV+ D
Sbjct: 230 L---KSSKSFDDDQQALTSRS---------------GMDMAST-----LERIQESFVITD 266
Query: 259 PHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVR 318
P LPD P+V+ASD FL TGY R E++G+NCRFL G DTD + I+++I TVR
Sbjct: 267 PSLPDHPIVFASDGFLSFTGYTREEILGRNCRFLQGKDTDQNSVKAIRDAIDAGSEVTVR 326
Query: 319 ILNYRKDKSSFWNLLHISPIRNASGKV 345
+LNY K+ FWN+ ++P+R+ GKV
Sbjct: 327 LLNYTKNGRPFWNMFTLAPVRDDEGKV 353
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 78/126 (61%), Gaps = 1/126 (0%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
+Q+ +R + + L+ + +SF ITDPS+ HPIVFAS GFL +G++R EI+GRN R
Sbjct: 240 QQALTSRSGMDMASTLERIQESFVITDPSLPDHPIVFASDGFLSFTGYTREEILGRNCRF 299
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QG T++ ++ IR+AI + V LLNY K+G PFW +F ++ V E G+ F
Sbjct: 300 LQGKDTDQNSVKAIRDAIDAGSEVTVRLLNYTKNGRPFWNMFTLAPVRDDE-GKVRFFAG 358
Query: 129 VQVPIV 134
VQV +
Sbjct: 359 VQVDVT 364
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 73/108 (67%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+ ++ +L ++ +F + D PD P+VYASD+FL++TGY E++ NCRFL G DTD
Sbjct: 64 VKQNVAQALATLRHTFTVCDATAPDCPIVYASDSFLQMTGYPSEEIIHHNCRFLQGKDTD 123
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +++++++ + +VR+LNYRKD + FWN L I+P++ A G V+
Sbjct: 124 PESVKKLRDAVKAGERVSVRLLNYRKDGTPFWNYLTIAPVKLADGTVV 171
>gi|30697015|ref|NP_568874.2| phototropin 2 [Arabidopsis thaliana]
gi|332009618|gb|AED97001.1| phototropin 2 [Arabidopsis thaliana]
Length = 689
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 121/370 (32%), Positives = 194/370 (52%), Gaps = 45/370 (12%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + AL L +F ++D + PIV+AS GF M+G+S EI+GRN R QGP T
Sbjct: 119 RVSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDT 178
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
++ + +IR+ ++ + LLNYKKDGTPFW L ++ + K+D G F+ +QV +
Sbjct: 179 DKNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPI--KDDQGNTIKFIGMQVEV 236
Query: 134 ------VSRKHMRNSGMSYSEDGGGSRLREIVFGSC---------RREVCSDSLLDLDRV 178
V+ K +R +G+S S +R +E S R+ +S+ + D +
Sbjct: 237 SKYTEGVNDKALRPNGLSKSLIRYDARQKEKALDSITEVVQTIRHRKSQVQESVSN-DTM 295
Query: 179 LALDSDDT---GLEIEDSCEASDL------------EKRKAATAIDNILSVLTHYSQLTG 223
+ DS T G + S EAS K K++ L + +
Sbjct: 296 VKPDSSTTPTPGRQTRQSDEASKSFRTPGRVSTPTGSKLKSSNNRHEDLLRMEPEELMLS 355
Query: 224 RLVCGKRCSLP--------GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLK 275
V G+R S G L +L RI+++FV+ DP LPD P+++ASD+FL+
Sbjct: 356 TEVIGQRDSWDLSDRERDIRQGI---DLATTLERIEKNFVISDPRLPDNPIIFASDSFLE 412
Query: 276 LTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHI 335
LT Y R E++G+NCRFL G +TD + +I+++I+ ++ TV+++NY K FWNL H+
Sbjct: 413 LTEYSREEILGRNCRFLQGPETDQATVQKIRDAIRDQREITVQLINYTKSGKKFWNLFHL 472
Query: 336 SPIRNASGKV 345
P+R+ G++
Sbjct: 473 QPMRDQKGEL 482
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 70/108 (64%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L ++Q+FV+ D P P+VYAS F +TGY E+VG+NCRFL G DTD
Sbjct: 120 VSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTD 179
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I++ ++ ++ R+LNY+KD + FWNLL ++PI++ G +
Sbjct: 180 KNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDQGNTI 227
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F I+DP + +PI+FAS FL+++ +SR EI+GRN R QGP T++ T+ +I
Sbjct: 383 TLERIEKNFVISDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDQATVQKI 442
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R+AIR++R I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 443 RDAIRDQREITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 490
>gi|297793331|ref|XP_002864550.1| hypothetical protein ARALYDRAFT_495918 [Arabidopsis lyrata subsp.
lyrata]
gi|297310385|gb|EFH40809.1| hypothetical protein ARALYDRAFT_495918 [Arabidopsis lyrata subsp.
lyrata]
Length = 915
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/369 (32%), Positives = 192/369 (52%), Gaps = 45/369 (12%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + AL L +F ++D + PIV+AS GF M+G+S EI+GRN R QGP T
Sbjct: 119 RVSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDT 178
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
++ + +IR+ ++ + LLNYKKDGTPFW L ++ + K+D G F+ +QV +
Sbjct: 179 DKNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPI--KDDQGNTIKFIGMQVEV 236
Query: 134 ------VSRKHMRNSGMSYSEDGGGSRLREIVFGSC---------RREVCSDSLLDLDRV 178
V+ K +R +G+S S +R +E S R+ +S+ + + V
Sbjct: 237 SKYTEGVNDKVLRPNGLSKSLIRYDARQKEKALDSITEVVQTIRHRKSQVQESVSNSNMV 296
Query: 179 LALDSDDTGLEIEDSCEASDL------------EKRKAATAIDNILSVLTHYSQLTGRLV 226
S G + S EAS K K+++ L + + V
Sbjct: 297 TPDSSTTPGRQNRQSDEASKSFRTPGRVSTPTGTKLKSSSNKHEDLLRMEPEELMLSTEV 356
Query: 227 CGKRCSL----------PGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKL 276
G+R S G+ L +L RI+++FV+ DP LPD P+++ASD+FL+L
Sbjct: 357 IGQRDSWDLSDRERDIRQGI-----DLATTLERIEKNFVISDPRLPDNPIIFASDSFLEL 411
Query: 277 TGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHIS 336
T Y R E++G+NCRFL G +TD + +I+++I+ + TV+++NY K FWNL H+
Sbjct: 412 TEYTREEILGRNCRFLQGPETDQATVQKIRDAIRDQTEITVQLINYTKSGKKFWNLFHLQ 471
Query: 337 PIRNASGKV 345
P+R+ G++
Sbjct: 472 PMRDQKGEL 480
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 70/108 (64%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L ++Q+FV+ D P P+VYAS F +TGY E+VG+NCRFL G DTD
Sbjct: 120 VSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTD 179
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I++ ++ ++ R+LNY+KD + FWNLL ++PI++ G +
Sbjct: 180 KNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDQGNTI 227
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 72/109 (66%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F I+DP + +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ +I
Sbjct: 381 TLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVQKI 440
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R+AIR++ I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 441 RDAIRDQTEITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 488
>gi|145362057|ref|NP_851212.2| phototropin 2 [Arabidopsis thaliana]
gi|332009620|gb|AED97003.1| phototropin 2 [Arabidopsis thaliana]
Length = 898
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 121/372 (32%), Positives = 195/372 (52%), Gaps = 49/372 (13%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + AL L +F ++D + PIV+AS GF M+G+S EI+GRN R QGP T
Sbjct: 119 RVSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDT 178
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
++ + +IR+ ++ + LLNYKKDGTPFW L ++ + K+D G F+ +QV +
Sbjct: 179 DKNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPI--KDDQGNTIKFIGMQVEV 236
Query: 134 ------VSRKHMRNSGMSYSEDGGGSRLREIVFGSC---------RREVCSDSLLDLDRV 178
V+ K +R +G+S S +R +E S R+ +S+ + D +
Sbjct: 237 SKYTEGVNDKALRPNGLSKSLIRYDARQKEKALDSITEVVQTIRHRKSQVQESVSN-DTM 295
Query: 179 LALDSDDT---GLEIEDSCEASDL------------EKRKAATAIDNILSVLTHYSQLTG 223
+ DS T G + S EAS K K++ L + +
Sbjct: 296 VKPDSSTTPTPGRQTRQSDEASKSFRTPGRVSTPTGSKLKSSNNRHEDLLRMEPEELMLS 355
Query: 224 RLVCGKRCSL----------PGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAF 273
V G+R S G+ L +L RI+++FV+ DP LPD P+++ASD+F
Sbjct: 356 TEVIGQRDSWDLSDRERDIRQGI-----DLATTLERIEKNFVISDPRLPDNPIIFASDSF 410
Query: 274 LKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLL 333
L+LT Y R E++G+NCRFL G +TD + +I+++I+ ++ TV+++NY K FWNL
Sbjct: 411 LELTEYSREEILGRNCRFLQGPETDQATVQKIRDAIRDQREITVQLINYTKSGKKFWNLF 470
Query: 334 HISPIRNASGKV 345
H+ P+R+ G++
Sbjct: 471 HLQPMRDQKGEL 482
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 70/108 (64%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L ++Q+FV+ D P P+VYAS F +TGY E+VG+NCRFL G DTD
Sbjct: 120 VSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTD 179
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I++ ++ ++ R+LNY+KD + FWNLL ++PI++ G +
Sbjct: 180 KNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDQGNTI 227
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F I+DP + +PI+FAS FL+++ +SR EI+GRN R QGP T++ T+ +I
Sbjct: 383 TLERIEKNFVISDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDQATVQKI 442
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R+AIR++R I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 443 RDAIRDQREITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 490
>gi|30697007|ref|NP_851210.1| phototropin 2 [Arabidopsis thaliana]
gi|30697010|ref|NP_851211.1| phototropin 2 [Arabidopsis thaliana]
gi|82593023|sp|P93025.2|PHOT2_ARATH RecName: Full=Phototropin-2; AltName: Full=Defective in chloroplast
avoidance protein 1; AltName: Full=Non-phototropic
hypocotyl 1-like protein 1; Short=AtKin7;
Short=NPH1-like protein 1
gi|5391442|gb|AAC27293.2| non phototropic hypocotyl 1-like [Arabidopsis thaliana]
gi|10176790|dbj|BAB09904.1| unnamed protein product [Arabidopsis thaliana]
gi|332009619|gb|AED97002.1| phototropin 2 [Arabidopsis thaliana]
gi|332009621|gb|AED97004.1| phototropin 2 [Arabidopsis thaliana]
Length = 915
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 121/372 (32%), Positives = 195/372 (52%), Gaps = 49/372 (13%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + AL L +F ++D + PIV+AS GF M+G+S EI+GRN R QGP T
Sbjct: 119 RVSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDT 178
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
++ + +IR+ ++ + LLNYKKDGTPFW L ++ + K+D G F+ +QV +
Sbjct: 179 DKNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPI--KDDQGNTIKFIGMQVEV 236
Query: 134 ------VSRKHMRNSGMSYSEDGGGSRLREIVFGSC---------RREVCSDSLLDLDRV 178
V+ K +R +G+S S +R +E S R+ +S+ + D +
Sbjct: 237 SKYTEGVNDKALRPNGLSKSLIRYDARQKEKALDSITEVVQTIRHRKSQVQESVSN-DTM 295
Query: 179 LALDSDDT---GLEIEDSCEASDL------------EKRKAATAIDNILSVLTHYSQLTG 223
+ DS T G + S EAS K K++ L + +
Sbjct: 296 VKPDSSTTPTPGRQTRQSDEASKSFRTPGRVSTPTGSKLKSSNNRHEDLLRMEPEELMLS 355
Query: 224 RLVCGKRCSL----------PGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAF 273
V G+R S G+ L +L RI+++FV+ DP LPD P+++ASD+F
Sbjct: 356 TEVIGQRDSWDLSDRERDIRQGI-----DLATTLERIEKNFVISDPRLPDNPIIFASDSF 410
Query: 274 LKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLL 333
L+LT Y R E++G+NCRFL G +TD + +I+++I+ ++ TV+++NY K FWNL
Sbjct: 411 LELTEYSREEILGRNCRFLQGPETDQATVQKIRDAIRDQREITVQLINYTKSGKKFWNLF 470
Query: 334 HISPIRNASGKV 345
H+ P+R+ G++
Sbjct: 471 HLQPMRDQKGEL 482
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 70/108 (64%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L ++Q+FV+ D P P+VYAS F +TGY E+VG+NCRFL G DTD
Sbjct: 120 VSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTD 179
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I++ ++ ++ R+LNY+KD + FWNLL ++PI++ G +
Sbjct: 180 KNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDQGNTI 227
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F I+DP + +PI+FAS FL+++ +SR EI+GRN R QGP T++ T+ +I
Sbjct: 383 TLERIEKNFVISDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDQATVQKI 442
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R+AIR++R I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 443 RDAIRDQREITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 490
>gi|20797092|emb|CAC94940.1| putative blue light receptor [Chlamydomonas reinhardtii]
Length = 750
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 109/323 (33%), Positives = 175/323 (54%), Gaps = 32/323 (9%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+ L L +F + D ++ P+V+AS GF M+G+ E++G N R QG T+ + + +
Sbjct: 13 KVLAGLRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQK 72
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
IR+AI++ V LLNY+KDGTPFW L ++ + DGR + FV VQV + S+
Sbjct: 73 IRDAIKKGEACSVRLLNYRKDGTPFWNLLTVTPI-KTPDGRVSKFVGVQVDVTSK----T 127
Query: 142 SGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDLEK 201
G + +++ G L + + R+ + +++D D +A++ + G+E + +
Sbjct: 128 EGKALADNSGVPLL--VKYDHRLRDNVARTIVD-DVTIAVEKAE-GVEPGQASAVAAAAP 183
Query: 202 RKAATAIDNILSVLTHYSQLTGRLVCGKRCSLP-GMGFISSSLYISLGRIKQSFVLIDPH 260
A G R + P ++ L ++ RI+Q+F + DP
Sbjct: 184 LGAK----------------------GPRGTAPKSFPRVALDLATTVERIQQNFCISDPT 221
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320
LPD P+V+ASDAFL+LTGY R EV+G+NCRFL G TD + QI+ +I+ TVRIL
Sbjct: 222 LPDCPIVFASDAFLELTGYSREEVLGRNCRFLQGAGTDRGTVDQIRAAIKEGSELTVRIL 281
Query: 321 NYRKDKSSFWNLLHISPIRNASG 343
NY K +FWN+ ++P+R+ G
Sbjct: 282 NYTKAGKAFWNMFTLAPMRDQDG 304
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 77/113 (68%)
Query: 233 LPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFL 292
+ G+ +S L L ++ +FV+ D LPD P+VYAS+ F +TGY +EV+G NCRFL
Sbjct: 1 MAGVPAPASQLTKVLAGLRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFL 60
Query: 293 NGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
G TD + +I+++I+ +AC+VR+LNYRKD + FWNLL ++PI+ G+V
Sbjct: 61 QGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPFWNLLTVTPIKTPDGRV 113
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 2/131 (1%)
Query: 6 GLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN 65
G +SF R L + ++ + +F I+DP++ PIVFAS FL+++G+SR E++GRN
Sbjct: 191 GTAPKSFP-RVALDLATTVERIQQNFCISDPTLPDCPIVFASDAFLELTGYSREEVLGRN 249
Query: 66 GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATH 125
R QG T+R T+ +IR AI+E + V +LNY K G FW +F ++ +DG A
Sbjct: 250 CRFLQGAGTDRGTVDQIRAAIKEGSELTVRILNYTKAGKAFWNMFTLA-PMRDQDGHARF 308
Query: 126 FVAVQVPIVSR 136
FV VQV + ++
Sbjct: 309 FVGVQVDVTAQ 319
>gi|159470479|ref|XP_001693387.1| phototropin [Chlamydomonas reinhardtii]
gi|158277645|gb|EDP03413.1| phototropin [Chlamydomonas reinhardtii]
Length = 750
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 109/323 (33%), Positives = 175/323 (54%), Gaps = 32/323 (9%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+ L L +F + D ++ P+V+AS GF M+G+ E++G N R QG T+ + + +
Sbjct: 13 KVLAGLRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQK 72
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
IR+AI++ V LLNY+KDGTPFW L ++ + DGR + FV VQV + S+
Sbjct: 73 IRDAIKKGEACSVRLLNYRKDGTPFWNLLTVTPI-KTPDGRVSKFVGVQVDVTSK----T 127
Query: 142 SGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDLEK 201
G + +++ G L + + R+ + +++D D +A++ + G+E + +
Sbjct: 128 EGKALADNSGVPLL--VKYDHRLRDNVARTIVD-DVTIAVEKAE-GVEPGQASAVAAAAP 183
Query: 202 RKAATAIDNILSVLTHYSQLTGRLVCGKRCSLP-GMGFISSSLYISLGRIKQSFVLIDPH 260
A G R + P ++ L ++ RI+Q+F + DP
Sbjct: 184 LGAK----------------------GPRGTAPKSFPRVALDLATTVERIQQNFCISDPT 221
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320
LPD P+V+ASDAFL+LTGY R EV+G+NCRFL G TD + QI+ +I+ TVRIL
Sbjct: 222 LPDCPIVFASDAFLELTGYSREEVLGRNCRFLQGAGTDRGTVDQIRAAIKEGSELTVRIL 281
Query: 321 NYRKDKSSFWNLLHISPIRNASG 343
NY K +FWN+ ++P+R+ G
Sbjct: 282 NYTKAGKAFWNMFTLAPMRDQDG 304
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 77/113 (68%)
Query: 233 LPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFL 292
+ G+ +S L L ++ +FV+ D LPD P+VYAS+ F +TGY +EV+G NCRFL
Sbjct: 1 MAGVPAPASQLTKVLAGLRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFL 60
Query: 293 NGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
G TD + +I+++I+ +AC+VR+LNYRKD + FWNLL ++PI+ G+V
Sbjct: 61 QGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPFWNLLTVTPIKTPDGRV 113
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 2/131 (1%)
Query: 6 GLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN 65
G +SF R L + ++ + +F I+DP++ PIVFAS FL+++G+SR E++GRN
Sbjct: 191 GTAPKSFP-RVALDLATTVERIQQNFCISDPTLPDCPIVFASDAFLELTGYSREEVLGRN 249
Query: 66 GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATH 125
R QG T+R T+ +IR AI+E + V +LNY K G FW +F ++ +DG A
Sbjct: 250 CRFLQGAGTDRGTVDQIRAAIKEGSELTVRILNYTKAGKAFWNMFTLA-PMRDQDGHARF 308
Query: 126 FVAVQVPIVSR 136
FV VQV + ++
Sbjct: 309 FVGVQVDVTAQ 319
>gi|20797097|emb|CAC94941.1| putative blue light receptor [Chlamydomonas reinhardtii]
Length = 749
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 109/323 (33%), Positives = 175/323 (54%), Gaps = 32/323 (9%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+ L L +F + D ++ P+V+AS GF M+G+ E++G N R QG T+ + + +
Sbjct: 13 KVLAGLRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQK 72
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
IR+AI++ V LLNY+KDGTPFW L ++ + DGR + FV VQV + S+
Sbjct: 73 IRDAIKKGEACSVRLLNYRKDGTPFWNLLTVTPI-KTPDGRVSKFVGVQVDVTSK----T 127
Query: 142 SGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDLEK 201
G + +++ G L + + R+ + +++D D +A++ + G+E + +
Sbjct: 128 EGKALADNSGVPLL--VKYDHRLRDNVARTIVD-DVTIAVEKAE-GVEPGQASAVAAAAP 183
Query: 202 RKAATAIDNILSVLTHYSQLTGRLVCGKRCSLP-GMGFISSSLYISLGRIKQSFVLIDPH 260
A G R + P ++ L ++ RI+Q+F + DP
Sbjct: 184 LGAK----------------------GPRGTAPKSFPRVALDLATTVERIQQNFCISDPT 221
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320
LPD P+V+ASDAFL+LTGY R EV+G+NCRFL G TD + QI+ +I+ TVRIL
Sbjct: 222 LPDCPIVFASDAFLELTGYSREEVLGRNCRFLQGAGTDRGTVDQIRAAIKEGSELTVRIL 281
Query: 321 NYRKDKSSFWNLLHISPIRNASG 343
NY K +FWN+ ++P+R+ G
Sbjct: 282 NYTKAGKAFWNMFTLAPMRDQDG 304
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 77/113 (68%)
Query: 233 LPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFL 292
+ G+ +S L L ++ +FV+ D LPD P+VYAS+ F +TGY +EV+G NCRFL
Sbjct: 1 MAGVPAPASQLTKVLAGLRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFL 60
Query: 293 NGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
G TD + +I+++I+ +AC+VR+LNYRKD + FWNLL ++PI+ G+V
Sbjct: 61 QGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPFWNLLTVTPIKTPDGRV 113
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 2/131 (1%)
Query: 6 GLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN 65
G +SF R L + ++ + +F I+DP++ PIVFAS FL+++G+SR E++GRN
Sbjct: 191 GTAPKSFP-RVALDLATTVERIQQNFCISDPTLPDCPIVFASDAFLELTGYSREEVLGRN 249
Query: 66 GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATH 125
R QG T+R T+ +IR AI+E + V +LNY K G FW +F ++ +DG A
Sbjct: 250 CRFLQGAGTDRGTVDQIRAAIKEGSELTVRILNYTKAGKAFWNMFTLA-PMRDQDGHARF 308
Query: 126 FVAVQVPIVSR 136
FV VQV + ++
Sbjct: 309 FVGVQVDVTAQ 319
>gi|356542583|ref|XP_003539746.1| PREDICTED: phototropin-1-like [Glycine max]
Length = 977
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 119/390 (30%), Positives = 184/390 (47%), Gaps = 70/390 (17%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF KM+G++ E+IGRN R QG T+ +
Sbjct: 168 LRDALSAFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFMQGADTDPDDV 227
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI------ 133
+IREA++ LLNYKKDGTPFW L ++ + +DGR F+ +QV +
Sbjct: 228 AKIREALQSGSTYCGRLLNYKKDGTPFWNLLTIAPI-KDDDGRVLKFIGMQVEVSKHTEG 286
Query: 134 VSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDS 193
K +R +G+ S +R +E S+ LL + R AL I+ S
Sbjct: 287 AKEKMLRPNGLPESLIRYDARQKEKA-----NSTVSELLLAVRRPRALSESAGRPMIKKS 341
Query: 194 C---EASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPG-----------MGFI 239
+A D K++ ++ S R + LP MGFI
Sbjct: 342 ASGDDAQDKPPEKSSRRKSESVASFRRKSHAGDRSSMERITELPEKKHKSSRRRSFMGFI 401
Query: 240 SSS--------------------------------------------LYISLGRIKQSFV 255
S L +L RI+++FV
Sbjct: 402 RKSQSNFGSFNDEAVVENSSESSDEDDERPESFDGKVQKKEKRKGLDLATTLERIEKNFV 461
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315
+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD + +I+E+I +
Sbjct: 462 ITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDNQTDV 521
Query: 316 TVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV+++NY K FWNL H+ P+R+ G+V
Sbjct: 522 TVQLINYTKSGKKFWNLFHLQPMRDQKGEV 551
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 75/112 (66%)
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G+ +S L +L +Q+FV+ D PD P++YAS F K+TGY EV+G+NCRF+ G
Sbjct: 160 GIPRVSEDLRDALSAFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFMQG 219
Query: 295 VDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
DTD + +I+E++Q+ R+LNY+KD + FWNLL I+PI++ G+VL
Sbjct: 220 ADTDPDDVAKIREALQSGSTYCGRLLNYKKDGTPFWNLLTIAPIKDDDGRVL 271
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 10 QSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMF 69
Q R L + L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R
Sbjct: 439 QKKEKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFL 498
Query: 70 QGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAV 129
QGP T+ T+ +IREAI + + V L+NY K G FW LF + + ++ G +F+ V
Sbjct: 499 QGPETDPATVRKIREAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQK-GEVQYFIGV 557
Query: 130 QV 131
Q+
Sbjct: 558 QL 559
>gi|145355076|ref|XP_001421797.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582035|gb|ABP00091.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 734
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 109/326 (33%), Positives = 159/326 (48%), Gaps = 41/326 (12%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V A +FT+ D + PIV+AS GFL+M+ + E+IG N R QG T+ +
Sbjct: 20 VARAFAAFDHTFTVCDATREDCPIVYASDGFLRMTQYGADEVIGHNCRFLQGEATDGNDV 79
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
E+REAI+ V LLNYKKDGTPFW ++ V DG ++ VQV + K
Sbjct: 80 RELREAIKRGDRWSVRLLNYKKDGTPFWNYLVVAPV-KLADGTVAKYIGVQVDVTEVKDA 138
Query: 140 RNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDL 199
G R +D D+ G+ + S
Sbjct: 139 TT----------GER-------------------------GIDFDEEGMPV-----PSRY 158
Query: 200 EKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDP 259
+ R AA ++ + V G G + G + L +L RI+QSFV+ DP
Sbjct: 159 DARAAAVSLGRVSEVENAVRAAEGLSEDGVDDAGARKGRVGLDLASTLERIEQSFVITDP 218
Query: 260 HLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRI 319
LPD P+V+ASD F+ TGY +E++G+NCRFL G TD + +I+++I+ + CTVR+
Sbjct: 219 SLPDHPIVFASDGFMDFTGYSVDEILGRNCRFLQGPKTDRAAVAKIRQAIELGEECTVRL 278
Query: 320 LNYRKDKSSFWNLLHISPIRNASGKV 345
LNY K FWN+ ++P+R+ G V
Sbjct: 279 LNYTKSGKQFWNMFTLAPVRDDQGIV 304
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R L + L+ + SF ITDPS+ HPIVFAS GF+ +G+S EI+GRN R QGP+T
Sbjct: 197 RVGLDLASTLERIEQSFVITDPSLPDHPIVFASDGFMDFTGYSVDEILGRNCRFLQGPKT 256
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
+R + +IR+AI V LLNY K G FW +F ++ V + G F VQV I
Sbjct: 257 DRAAVAKIRQAIELGEECTVRLLNYTKSGKQFWNMFTLAPV-RDDQGIVRFFAGVQVDIT 315
Query: 135 S 135
+
Sbjct: 316 A 316
>gi|168005245|ref|XP_001755321.1| PHOTB3 phototropin blue light photoreceptor [Physcomitrella patens
subsp. patens]
gi|162693449|gb|EDQ79801.1| PHOTB3 phototropin blue light photoreceptor [Physcomitrella patens
subsp. patens]
Length = 732
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 112/343 (32%), Positives = 173/343 (50%), Gaps = 38/343 (11%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R T + EAL +F ITD HPIVFASRGF M+G+S E+IG+N R QGP T
Sbjct: 4 RVTKGLLEALTSFKQTFVITDAMRLDHPIVFASRGFFTMTGYSPEEVIGQNCRFLQGPDT 63
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI- 133
+ + + +IR ++ +P LLNY+K+ TPFW + ++ + E+ R + +QV +
Sbjct: 64 DPKEVEKIRHGLKAGKPFCGRLLNYRKNRTPFWNILTITPI-KDENDRVIKCIGMQVEMS 122
Query: 134 --------VSR--KHMRNSGMSYSEDGGGSRLREI-VFGSCRREVCSDSLLDLDRVLALD 182
V+R + S + Y E S + + V E SL+ + + L
Sbjct: 123 KYTEGVKSVARCPNGLPESLIRYDEMATESVTQLVKVLKKPLSEF--QSLVGIGKSQRLQ 180
Query: 183 SDDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSS 242
D T E+ E+ + ++ +L G R +
Sbjct: 181 EDTTKFELSPGVVMLGHEQPETQDVLNRML---------------GMRRGI--------D 217
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L ++ RI ++FV+ DP LPD P+++ASD FL+LT Y R E++G NCRFL G D D +
Sbjct: 218 LATTIERIDRNFVITDPRLPDNPIIFASDDFLELTEYSREEILGHNCRFLQGRDKDQNTV 277
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
QI++SI+ + TV++LNY K FWNL H+ +R+ G++
Sbjct: 278 QQIRDSIRENRDITVQLLNYTKSGKPFWNLFHLQAMRDQKGEL 320
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 70/108 (64%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
++ L +L KQ+FV+ D D P+V+AS F +TGY EV+GQNCRFL G DTD
Sbjct: 5 VTKGLLEALTSFKQTFVITDAMRLDHPIVFASRGFFTMTGYSPEEVIGQNCRFLQGPDTD 64
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+ ++ + R+LNYRK+++ FWN+L I+PI++ + +V+
Sbjct: 65 PKEVEKIRHGLKAGKPFCGRLLNYRKNRTPFWNILTITPIKDENDRVI 112
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+F ITDP + +PI+FAS FL+++ +SR EI+G N R QG ++ T+ +IR++IRE
Sbjct: 228 NFVITDPRLPDNPIIFASDDFLELTEYSREEILGHNCRFLQGRDKDQNTVQQIRDSIREN 287
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R I V LLNY K G PFW LF + + G +F+ VQ+
Sbjct: 288 RDITVQLLNYTKSGKPFWNLFHLQ-AMRDQKGELQYFIGVQL 328
>gi|302802410|ref|XP_002982959.1| hypothetical protein SELMODRAFT_10296 [Selaginella moellendorffii]
gi|300149112|gb|EFJ15768.1| hypothetical protein SELMODRAFT_10296 [Selaginella moellendorffii]
Length = 824
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/347 (31%), Positives = 183/347 (52%), Gaps = 25/347 (7%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F + D + PI++AS GF M+G++ E+IGRN R QG T+ +
Sbjct: 72 LKDALSSFQQTFVVCDATDPELPILYASAGFFSMTGYTAKEVIGRNCRFLQGTETDPADV 131
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS---- 135
+IR A+ + + LLNYKK+GTPFW L ++ + EDG+ ++ + V +
Sbjct: 132 SKIRVALEQGKSFCGRLLNYKKNGTPFWNLLTIAPI-KDEDGKVLKYIGMLVEVSQFTEG 190
Query: 136 --RKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDS 193
K +R +GM S +R ++ V S V S D+ D + ++ D
Sbjct: 191 SKDKAVRPNGMPESLIKYDARQKDSVVSSVSELVEVFSTSKTDQSNDHDRRASAGKLTDV 250
Query: 194 CEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISS------------ 241
EAS ++ K ++LS L + + + + + +L +
Sbjct: 251 PEASPVKASKRTRRSSSLLSFLRRHVRASAEI---DQLTLKTADNVDDFPEDFQRKKEIR 307
Query: 242 ---SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G DT+
Sbjct: 308 RGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGKNCRFLQGPDTN 367
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +I+ +I+ +++ TV++LNY K FWNL H+ P+R+ G++
Sbjct: 368 QETVTRIRYAIRDQRSITVQLLNYTKRGKPFWNLFHLQPMRDNKGEL 414
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 75/113 (66%)
Query: 234 PGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLN 293
P + +S L +L +Q+FV+ D P++P++YAS F +TGY EV+G+NCRFL
Sbjct: 63 PHIPRVSEDLKDALSSFQQTFVVCDATDPELPILYASAGFFSMTGYTAKEVIGRNCRFLQ 122
Query: 294 GVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
G +TD + +I+ +++ ++ R+LNY+K+ + FWNLL I+PI++ GKVL
Sbjct: 123 GTETDPADVSKIRVALEQGKSFCGRLLNYKKNGTPFWNLLTIAPIKDEDGKVL 175
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+G+N R QGP TN+ T+ IR
Sbjct: 316 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGKNCRFLQGPDTNQETVTRIR 375
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
AIR++R I V LLNY K G PFW LF + + + G +F+ VQ+
Sbjct: 376 YAIRDQRSITVQLLNYTKRGKPFWNLFHLQPMRDNK-GELQYFIGVQL 422
>gi|242051781|ref|XP_002455036.1| hypothetical protein SORBIDRAFT_03g003350 [Sorghum bicolor]
gi|241927011|gb|EES00156.1| hypothetical protein SORBIDRAFT_03g003350 [Sorghum bicolor]
Length = 213
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/162 (59%), Positives = 119/162 (73%)
Query: 184 DDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSL 243
D GLE E+ ASD EK A + +NI+SVL YS+LTG +V +RCS G+ +SSSL
Sbjct: 2 DKRGLEAEELRVASDCEKEMATSMANNIVSVLNRYSKLTGLVVSSQRCSSVGIPALSSSL 61
Query: 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLY 303
+SLGRIKQSFVL D LPDMP++YASDAF LTGY R E++G NC+ LNG T VL
Sbjct: 62 NLSLGRIKQSFVLTDSRLPDMPIIYASDAFTSLTGYSREEILGCNCKVLNGPGTSLEVLE 121
Query: 304 QIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I + I +EQACTV +L+YRKD SSF +LLH+SPIR+ASGKV
Sbjct: 122 EINQHICSEQACTVDLLSYRKDGSSFCDLLHVSPIRDASGKV 163
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 53/87 (60%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
+ SF +TD + PI++AS F ++G+SR EI+G N ++ GP T+ + EI + I
Sbjct: 68 IKQSFVLTDSRLPDMPIIYASDAFTSLTGYSREEILGCNCKVLNGPGTSLEVLEEINQHI 127
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMS 113
E+ V+LL+Y+KDG+ F L +S
Sbjct: 128 CSEQACTVDLLSYRKDGSSFCDLLHVS 154
>gi|302764126|ref|XP_002965484.1| hypothetical protein SELMODRAFT_230655 [Selaginella moellendorffii]
gi|300166298|gb|EFJ32904.1| hypothetical protein SELMODRAFT_230655 [Selaginella moellendorffii]
Length = 952
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 108/347 (31%), Positives = 184/347 (53%), Gaps = 25/347 (7%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F + D + PI++AS GF M+G++ E+IGRN R QG T+ +
Sbjct: 185 LKDALSSFQQTFVVCDATDPELPILYASAGFFSMTGYTAKEVIGRNCRFLQGTETDPVDV 244
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS---- 135
+IR A+ + + LLNYKK+GTPFW L ++ + EDG+ ++ + V +
Sbjct: 245 SKIRVALEQGKSFCGRLLNYKKNGTPFWNLLTIAPI-KDEDGKVLKYIGMLVEVSQFTEG 303
Query: 136 --RKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDS 193
K +R +GM S +R ++ V S V S D+ D + ++ D
Sbjct: 304 SKDKAVRPNGMPESLIKYDARQKDSVVSSVSELVEVFSTSKRDQSNDHDRRASAGKLTDV 363
Query: 194 CEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISS------------ 241
EAS ++ K ++LS L +++ + + + +L +
Sbjct: 364 PEASPVKASKRTRRSSSLLSFLRRHAKDSAEI---DQLTLKTADNVDDFPEDFQRKKEIR 420
Query: 242 ---SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G DT+
Sbjct: 421 RGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGKNCRFLQGPDTN 480
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +I+ +I+ +++ TV++LNY K FWNL H+ P+R+ G++
Sbjct: 481 QETVTRIRYAIRDQKSITVQLLNYTKRGKPFWNLFHLQPMRDNKGEL 527
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 75/113 (66%)
Query: 234 PGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLN 293
P + +S L +L +Q+FV+ D P++P++YAS F +TGY EV+G+NCRFL
Sbjct: 176 PHIPRVSEDLKDALSSFQQTFVVCDATDPELPILYASAGFFSMTGYTAKEVIGRNCRFLQ 235
Query: 294 GVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
G +TD + +I+ +++ ++ R+LNY+K+ + FWNLL I+PI++ GKVL
Sbjct: 236 GTETDPVDVSKIRVALEQGKSFCGRLLNYKKNGTPFWNLLTIAPIKDEDGKVL 288
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+G+N R QGP TN+ T+ IR
Sbjct: 429 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGKNCRFLQGPDTNQETVTRIR 488
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
AIR+++ I V LLNY K G PFW LF + + + G +F+ VQ+
Sbjct: 489 YAIRDQKSITVQLLNYTKRGKPFWNLFHLQPMRDNK-GELQYFIGVQL 535
>gi|73760084|dbj|BAE20160.1| phototropin [Mougeotia scalaris]
gi|73760094|dbj|BAE20165.1| phototropin [Mougeotia scalaris]
Length = 839
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 109/354 (30%), Positives = 177/354 (50%), Gaps = 36/354 (10%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F + D + P++FAS GF +M+G+S E+IG+N R QGP T+R +
Sbjct: 38 LKDALTAFQQTFVMCDATKPNTPVMFASEGFYRMTGYSAKEVIGKNCRFLQGPETDRSEV 97
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIVSRKH 138
++++A+ + + LLNY+KDG+ FW L +S V K+D GR F+ +QV +
Sbjct: 98 EKLKQALLDGQSWCGRLLNYRKDGSSFWNLLTVSPV--KDDSGRVVKFIGMQVEVSKFTE 155
Query: 139 MRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLL----DLDRVLALDSDDTGLEIEDSC 194
+N + S +R EV + LL + + +++ +++
Sbjct: 156 GKNDDIKRPNQLPVSLIRYDDRQKDEAEVRVEELLQDMKESESPAEVEAKVQTVQVSVPA 215
Query: 195 EASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGM---GFISS---------- 241
+ S L K A + T S G+ K +P + G S
Sbjct: 216 QPSKLSKEAPAE------TKKTRRSSYFGKNAAPKAEEVPPVFEPGVEVSLLMEDELDTM 269
Query: 242 ----------SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRF 291
L +L RI+++FV+ DP LPD P+++ASD FL+LT Y R E++G+NCRF
Sbjct: 270 AVEKKHRHGIDLATTLERIQKNFVITDPRLPDNPIIFASDDFLELTEYTREEIIGRNCRF 329
Query: 292 LNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
L G DTD + +I+ +I Q TV++LNY K FWNL H+ +R+ G++
Sbjct: 330 LQGKDTDKETVAKIRHAIDNHQDITVQLLNYTKSGKPFWNLFHLQAVRDTKGRL 383
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 78/111 (70%)
Query: 236 MGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295
+G S L +L +Q+FV+ D P+ P+++AS+ F ++TGY EV+G+NCRFL G
Sbjct: 31 LGEASQGLKDALTAFQQTFVMCDATKPNTPVMFASEGFYRMTGYSAKEVIGKNCRFLQGP 90
Query: 296 DTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+TD + + ++K+++ Q+ R+LNYRKD SSFWNLL +SP+++ SG+V+
Sbjct: 91 ETDRSEVEKLKQALLDGQSWCGRLLNYRKDGSSFWNLLTVSPVKDDSGRVV 141
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 79/131 (60%), Gaps = 1/131 (0%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAE 60
M+ +L + +R+ + + L+ + +F ITDP + +PI+FAS FL+++ ++R E
Sbjct: 262 MEDELDTMAVEKKHRHGIDLATTLERIQKNFVITDPRLPDNPIIFASDDFLELTEYTREE 321
Query: 61 IIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED 120
IIGRN R QG T++ T+ +IR AI + I V LLNY K G PFW LF + V +
Sbjct: 322 IIGRNCRFLQGKDTDKETVAKIRHAIDNHQDITVQLLNYTKSGKPFWNLFHLQAVRDTK- 380
Query: 121 GRATHFVAVQV 131
GR +F+ VQ+
Sbjct: 381 GRLQYFIGVQL 391
>gi|414875956|tpg|DAA53087.1| TPA: hypothetical protein ZEAMMB73_525936 [Zea mays]
Length = 274
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 92/227 (40%), Positives = 129/227 (56%), Gaps = 15/227 (6%)
Query: 10 QSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMF 69
S RY+ WV E LDELP SF +TDP++ GHPIV+ASRG ++G++ +++GRN R+F
Sbjct: 22 SSLTARYSDWVLETLDELPGSFLLTDPALPGHPIVYASRGLAALTGYAPRDVLGRNARLF 81
Query: 70 QGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAV 129
QG T+R T+ +REA+R RP + +LNY++DG P W+L ++ +F DG HF+AV
Sbjct: 82 QGAATDRATVAGVREAVRAHRPHQAAILNYRRDGAPHWVLLHLAPLFHARDGTLLHFLAV 141
Query: 130 QVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRRE---VCSD--SLLDLDRVLALDSD 184
QVPI R G + +CR E V D +V +D D
Sbjct: 142 QVPIAPAAVAR---------GATCHTTGHLLAACRDEASRVAEDFPCATHAGKVF-VDMD 191
Query: 185 DTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRC 231
GLE E+ SD EK A + ++I+S L YS+LTG +V KRC
Sbjct: 192 KRGLETEEPRVPSDSEKDMAISTANSIVSALNSYSKLTGLVVSRKRC 238
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 57/96 (59%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + SF+L DP LP P+VYAS LTGY +V+G+N R G TD + +
Sbjct: 35 TLDELPGSFLLTDPALPGHPIVYASRGLAALTGYAPRDVLGRNARLFQGAATDRATVAGV 94
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNA 341
+E+++ + ILNYR+D + W LLH++P+ +A
Sbjct: 95 REAVRAHRPHQAAILNYRRDGAPHWVLLHLAPLFHA 130
>gi|224102759|ref|XP_002312790.1| predicted protein [Populus trichocarpa]
gi|222849198|gb|EEE86745.1| predicted protein [Populus trichocarpa]
Length = 923
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 117/375 (31%), Positives = 188/375 (50%), Gaps = 49/375 (13%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + +AL L +F ++D + PI++AS GF M+G+S EIIGRN R QG T
Sbjct: 131 RVSQELKDALATLQQTFVVSDATKPDCPIMYASGGFFTMTGYSSKEIIGRNCRFLQGADT 190
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
+R + +IR+A++ LLNYKK+GTPFW L ++ + K+D G A F+ +QV +
Sbjct: 191 DRNEVAKIRDAVKNGTSYCGRLLNYKKNGTPFWNLLTVTPI--KDDRGNAIKFIGMQVEV 248
Query: 134 ------VSRKHMRNSGMSYSEDGGGSR--------LREIV-----FGSCRREVCSDSLLD 174
V+ K R +G+ S +R + E+V S R D+
Sbjct: 249 SKYTEGVNDKAFRPNGLPKSLIRYDARQKAKALDSITEVVQTLKHPKSPSRTASHDTSDH 308
Query: 175 LDRVLALDSDDTGLEIEDSCEASDLEKRKAATAID----------NILSVLTHYS--QLT 222
LD +L D + S++ + A +I+S + H +
Sbjct: 309 LDCLLPKSVDFDSFTLPSRLTPSNVSQSPTAKNSRKSPRIPLMGLSIISAVKHEEPPAIE 368
Query: 223 GRLVCGKRCSLPG------------MGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYAS 270
++ K L GF L +L I+ +FV+ DP LPD P+ +AS
Sbjct: 369 PEILMTKDIELSDGWDRAEWERDIRQGF---HLATTLENIENNFVITDPRLPDNPITFAS 425
Query: 271 DAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFW 330
D FL+LT Y R E++G+NCRFL G +TD + + +I+++I+ ++ TV+++NY K FW
Sbjct: 426 DGFLELTEYTREEILGRNCRFLQGPETDQSTVSKIRDAIREQREITVQLINYTKSGKKFW 485
Query: 331 NLLHISPIRNASGKV 345
NL H+ P+R+ G++
Sbjct: 486 NLFHLQPMRDQKGEL 500
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + ++F ITDP + +PI FAS GFL+++ ++R EI+GRN R QGP T++ T+ +IR
Sbjct: 402 LENIENNFVITDPRLPDNPITFASDGFLELTEYTREEILGRNCRFLQGPETDQSTVSKIR 461
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AIRE+R I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 462 DAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 508
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 71/108 (65%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L ++Q+FV+ D PD P++YAS F +TGY E++G+NCRFL G DTD
Sbjct: 132 VSQELKDALATLQQTFVVSDATKPDCPIMYASGGFFTMTGYSSKEIIGRNCRFLQGADTD 191
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+++++ + R+LNY+K+ + FWNLL ++PI++ G +
Sbjct: 192 RNEVAKIRDAVKNGTSYCGRLLNYKKNGTPFWNLLTVTPIKDDRGNAI 239
>gi|357472521|ref|XP_003606545.1| Phototropin [Medicago truncatula]
gi|355507600|gb|AES88742.1| Phototropin [Medicago truncatula]
Length = 940
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 112/400 (28%), Positives = 187/400 (46%), Gaps = 77/400 (19%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF M+G++ E+IGRN R QG T+ +
Sbjct: 155 LRDALSAFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVIGRNCRFMQGADTDPNDV 214
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI------ 133
+IRE++ LLNYKKDGTPFW L ++ + E+G+ + +QV +
Sbjct: 215 AKIRESLAAGTTYCGRLLNYKKDGTPFWNLLTIAPI-KDENGKILKLIGMQVEVSKHTEG 273
Query: 134 VSRKHMRNSGMSYS--------EDGGGSRLREIVFGSCRR-EVCSDS-----LLDLDRVL 179
K +R +G+ S ++ S + E+V RR S+S + +
Sbjct: 274 TKEKMLRPNGLPKSLIRYDARQKEKANSSVNELVEAVSRRPRSLSESANRPPFIKVPTKT 333
Query: 180 ALDSDDTGLEIEDSCEASDLEKRKAAT------------AIDNILSVLTHYSQLTGRLVC 227
SD E++ + S ++ +T D + + ++ +
Sbjct: 334 VHSSDHATQELQKTPSKSSRRRKSESTLPSFRRKSHSGGGGDTHFNSMHPITETPENKIN 393
Query: 228 GKRCSLPGMGFISSSL------------------------------------------YI 245
+R S MGFI SL
Sbjct: 394 SRRRSF--MGFIRKSLSNNESFNDEQLADDEDSSEDDERPDSVDEKIKKREKRKGLDLAT 451
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD + +I
Sbjct: 452 TLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVKKI 511
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+++I + TV+++NY K FWNL H+ P+R+ G+V
Sbjct: 512 RQAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEV 551
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 73/112 (65%)
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G+ +S L +L +Q+FV+ D PD P++YAS F +TGY EV+G+NCRF+ G
Sbjct: 147 GIPRVSEDLRDALSAFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVIGRNCRFMQG 206
Query: 295 VDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
DTD + +I+ES+ R+LNY+KD + FWNLL I+PI++ +GK+L
Sbjct: 207 ADTDPNDVAKIRESLAAGTTYCGRLLNYKKDGTPFWNLLTIAPIKDENGKIL 258
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+ T+ +IR
Sbjct: 453 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVKKIR 512
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 513 QAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GEVQYFIGVQL 559
>gi|356560715|ref|XP_003548634.1| PREDICTED: LOW QUALITY PROTEIN: protein TWIN LOV 1-like [Glycine
max]
Length = 232
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/180 (53%), Positives = 121/180 (67%), Gaps = 18/180 (10%)
Query: 104 TPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSC 163
TPFWMLF++S VF + G HFV VQVP+ ++ GS +R+ FG C
Sbjct: 15 TPFWMLFRVSPVFSSDGGAVVHFVVVQVPLQKKE--------------GSEVRDFGFGCC 60
Query: 164 RREVCSDSLLDLDRVLALDS----DDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYS 219
R+EVC DSL++ D + +L+ D +E + CEASD EKR TA+D I SVLTHYS
Sbjct: 61 RKEVCVDSLVEXDHICSLEQLLEHDVREVERXEPCEASDDEKRSVVTAMDCIFSVLTHYS 120
Query: 220 QLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGY 279
+ T RLVC KR S+P +G +S+SL ISLGRIKQSFVL +PHLPDM +VYASDAFL LTG+
Sbjct: 121 EATRRLVCRKRSSIPDVGLLSTSLIISLGRIKQSFVLTNPHLPDMAIVYASDAFLNLTGF 180
>gi|384246421|gb|EIE19911.1| hypothetical protein COCSUDRAFT_19032 [Coccomyxa subellipsoidea
C-169]
Length = 319
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 105/326 (32%), Positives = 167/326 (51%), Gaps = 38/326 (11%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
F I+ PI+FAS F +++G++ E++G N R GP T+R+ +MEIR AI+EER
Sbjct: 14 FAISSARDPDMPIIFASPSFYELTGYTPEEVLGSNCRFLHGPDTSRQKVMEIRSAIQEER 73
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDG 150
+V + NYKK G FW F + +F ++ G +++ G
Sbjct: 74 AAQVCIKNYKKSGESFWNHFYLEPIF-EDAGVVEYYI----------------------G 110
Query: 151 GGSRLREIVFGSCRREVC----SDSLLDLDRVLALDSDDTGLEIEDSCEASDL------- 199
S++R F + R +VC + + L + + +DD L + D +D+
Sbjct: 111 TSSKIR---FNA-RIQVCRGYAAATFLCAECLPVARADDVPLVLTDEPSCADVRIALTQN 166
Query: 200 EKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDP 259
++ I L + + S+ G + + +SL L ++ QSFVL +P
Sbjct: 167 APMVGSSTICLTLLMCSIVSRSAGEGLVHHVSGPVAAPCVPTSLLQPLMKLAQSFVLANP 226
Query: 260 HLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRI 319
PD P+VYAS FL LTGY R++VVG+NCRFL G T+ + ++++ I TV++
Sbjct: 227 DEPDCPIVYASQRFLDLTGYPRDQVVGRNCRFLQGPGTNPEDVQRLRDGIAAGGPVTVKL 286
Query: 320 LNYRKDKSSFWNLLHISPIRNASGKV 345
LNY+ D + FWN LH++ +RNA GKV
Sbjct: 287 LNYKYDGTPFWNHLHVTSVRNACGKV 312
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 54/86 (62%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+ L +L SF + +P PIV+AS+ FL ++G+ R +++GRN R QGP TN +
Sbjct: 212 QPLMKLAQSFVLANPDEPDCPIVYASQRFLDLTGYPRDQVVGRNCRFLQGPGTNPEDVQR 271
Query: 82 IREAIREERPIEVNLLNYKKDGTPFW 107
+R+ I P+ V LLNYK DGTPFW
Sbjct: 272 LRDGIAAGGPVTVKLLNYKYDGTPFW 297
>gi|113911589|gb|ABI48276.1| phototropin-2 [Solanum lycopersicum]
Length = 952
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 62/383 (16%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL L +F ++D + PIV+AS GF M+G+S EI+GRN R QG T++ +
Sbjct: 148 LKDALATLQQTFVVSDATKPDCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGKDTDQNEV 207
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI----- 133
+IR+A++ + LLNYKK+GTPFW L ++ + K+D G+ F+ +QV +
Sbjct: 208 AKIRDAVKTGKSYCGRLLNYKKNGTPFWNLLTVTPI--KDDSGKTIKFIGMQVEVSKYTE 265
Query: 134 -VSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIED 192
V+ K +R +G+ S +R +E GS EV + + +G + E
Sbjct: 266 GVNEKELRPNGLPKSLIRYDARQKEKALGSI-TEVVQTVKGPRSHIKSSQDASSGTDKEK 324
Query: 193 SCEASDLEKRKAATAIDNILSVLTHYSQLTGR----LVCGK------RCSLPGMGFISSS 242
S D KAA NI + + Q R GK R SL G SS
Sbjct: 325 S--QVDFMLPKAADTESNISTPGRYTPQWDARGDVSQELGKKSRKSSRLSLKGSKGRPSS 382
Query: 243 LYISLGR---------------------------IKQSFVL-------------IDPHLP 262
+ L I+Q L DP LP
Sbjct: 383 ISFPLENEENVGPEIIMTEVERTDSWERAERERDIRQGIDLATTLERIEKNFVITDPRLP 442
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322
D P+++ASD+FL+LT + R E++G+NCRFL G +TD + +I+++I+ ++ TV+++NY
Sbjct: 443 DNPIIFASDSFLELTEFTREEILGRNCRFLQGPETDQATVQKIRDAIKEQKEITVQLINY 502
Query: 323 RKDKSSFWNLLHISPIRNASGKV 345
K FWNL H+ P+R+ G++
Sbjct: 503 TKSGKKFWNLFHLQPMRDQKGEL 525
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 75/108 (69%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L ++Q+FV+ D PD P+VYAS F +TGY E+VG+NCRFL G DTD
Sbjct: 144 VSQDLKDALATLQQTFVVSDATKPDCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGKDTD 203
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+++++T ++ R+LNY+K+ + FWNLL ++PI++ SGK +
Sbjct: 204 QNEVAKIRDAVKTGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDSGKTI 251
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ F+R EI+GRN R QGP T++ T+ +IR
Sbjct: 427 LERIEKNFVITDPRLPDNPIIFASDSFLELTEFTREEILGRNCRFLQGPETDQATVQKIR 486
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI+E++ I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 487 DAIKEQKEITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 533
>gi|350537331|ref|NP_001234289.1| phototropin-2 [Solanum lycopersicum]
gi|154000865|gb|ABS57001.1| phototropin-2 [Solanum lycopersicum]
Length = 952
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 62/383 (16%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL L +F ++D + PIV+AS GF M+G+S EI+GRN R QG T++ +
Sbjct: 148 LKDALATLQQTFVVSDATKPDCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGKDTDQNEV 207
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI----- 133
+IR+A++ + LLNYKK+GTPFW L ++ + K+D G+ F+ +QV +
Sbjct: 208 AKIRDAVKTGKSYCGRLLNYKKNGTPFWNLLTVTPI--KDDSGKTIKFIGMQVEVSKYTE 265
Query: 134 -VSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIED 192
V+ K +R +G+ S +R +E GS EV + + +G + E
Sbjct: 266 GVNEKELRPNGLPKSLIRYDARQKEKALGSI-TEVVQTVKGPRSHIKSSQDASSGTDKEK 324
Query: 193 SCEASDLEKRKAATAIDNILSVLTHYSQLTGR----LVCGK------RCSLPGMGFISSS 242
S D KAA NI + + Q R GK R SL G SS
Sbjct: 325 S--QVDFMLPKAADTESNISTPGRYTPQWDARGDVSQELGKKSRKSSRLSLKGSKGRPSS 382
Query: 243 LYISLGR---------------------------IKQSFVL-------------IDPHLP 262
+ L I+Q L DP LP
Sbjct: 383 ISFPLENEENVGPEIIMTEVERTDSWECAERERDIRQGIDLATTLERIEKNFVITDPRLP 442
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322
D P+++ASD+FL+LT + R E++G+NCRFL G +TD + +I+++I+ ++ TV+++NY
Sbjct: 443 DNPIIFASDSFLELTEFTREEILGRNCRFLQGPETDQATVQKIRDAIKEQKEITVQLINY 502
Query: 323 RKDKSSFWNLLHISPIRNASGKV 345
K FWNL H+ P+R+ G++
Sbjct: 503 TKSGKKFWNLFHLQPMRDQKGEL 525
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 75/108 (69%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L ++Q+FV+ D PD P+VYAS F +TGY E+VG+NCRFL G DTD
Sbjct: 144 VSQDLKDALATLQQTFVVSDATKPDCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGKDTD 203
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+++++T ++ R+LNY+K+ + FWNLL ++PI++ SGK +
Sbjct: 204 QNEVAKIRDAVKTGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDSGKTI 251
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ F+R EI+GRN R QGP T++ T+ +IR
Sbjct: 427 LERIEKNFVITDPRLPDNPIIFASDSFLELTEFTREEILGRNCRFLQGPETDQATVQKIR 486
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI+E++ I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 487 DAIKEQKEITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 533
>gi|73760086|dbj|BAE20161.1| phototropin [Mougeotia scalaris]
gi|73760096|dbj|BAE20166.1| phototropin [Mougeotia scalaris]
Length = 803
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 102/342 (29%), Positives = 176/342 (51%), Gaps = 25/342 (7%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ + L +F I+D + PIVFAS GF +M+G+ E+IG N R QG T+R +
Sbjct: 25 LKDVLTSFHQTFVISDATKPDIPIVFASEGFYEMTGYGPEEVIGYNCRFLQGEGTSRDEV 84
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+++ + E +P LLNY+KDGTPFW L +S V G+ F+ +Q +
Sbjct: 85 TRLKQCLVEGQPFCGRLLNYRKDGTPFWNLLTVSPV-RSATGKVVKFIGMQTEVSKFTEG 143
Query: 140 RNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDL 199
G+ D S +R + + +++ S+ ++ +A E+S
Sbjct: 144 AADGIKRPNDLPVSLIR---YDARQKDEAEVSVTEIVHAVAHPEKAIARLSTAVTESSKK 200
Query: 200 EKRKAAT-------------AIDNILSVLTHYSQLTGR---LVCGKRCSLPGMGFISSSL 243
++++ + I+ +V + GR + G++ G+ L
Sbjct: 201 HQQQSVSPEFGAEGLKTPLITINEKEAVDEVEVEEEGRDSFEITGEKKIRRGL-----DL 255
Query: 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLY 303
+L RI+++FV+ DP LP+ P+++ASD FL+LT Y R EV+G+NCRFL G DTD +
Sbjct: 256 ATTLERIQKNFVITDPRLPENPIIFASDDFLELTEYSREEVIGRNCRFLQGPDTDQDTVQ 315
Query: 304 QIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I+ + TV++LNY K FWN+ H+ ++N+ G++
Sbjct: 316 KIRDAIRDCRDVTVQLLNYTKSGKPFWNMFHLQAVKNSKGEL 357
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 80/132 (60%), Gaps = 1/132 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F ITDP + +PI+FAS FL+++ +SR E+IGRN R QGP T++ T+ +I
Sbjct: 258 TLERIQKNFVITDPRLPENPIIFASDDFLELTEYSREEVIGRNCRFLQGPDTDQDTVQKI 317
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R+AIR+ R + V LLNY K G PFW +F + V G +F+ VQ+ + +
Sbjct: 318 RDAIRDCRDVTVQLLNYTKSGKPFWNMFHLQAV-KNSKGELQYFIGVQLDASTYIEPKLQ 376
Query: 143 GMSYSEDGGGSR 154
+S S + G++
Sbjct: 377 PLSESAEKEGTK 388
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 69/106 (65%)
Query: 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTT 300
S L L Q+FV+ D PD+P+V+AS+ F ++TGY EV+G NCRFL G T
Sbjct: 23 SELKDVLTSFHQTFVISDATKPDIPIVFASEGFYEMTGYGPEEVIGYNCRFLQGEGTSRD 82
Query: 301 VLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ ++K+ + Q R+LNYRKD + FWNLL +SP+R+A+GKV+
Sbjct: 83 EVTRLKQCLVEGQPFCGRLLNYRKDGTPFWNLLTVSPVRSATGKVV 128
>gi|312282323|dbj|BAJ34027.1| unnamed protein product [Thellungiella halophila]
Length = 997
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 108/391 (27%), Positives = 184/391 (47%), Gaps = 75/391 (19%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF M+G++ E++GRN R QG T+ +
Sbjct: 187 LKDALSTFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDADEL 246
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI------ 133
+IRE + LLNYKKDGT FW L ++ + E G+ F+ +QV +
Sbjct: 247 AKIRETLAAGNNYCGRLLNYKKDGTSFWNLLTIAPI-KDESGKVLKFIGMQVEVSKHTEG 305
Query: 134 VSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDL----DRVLALDSDDTGLE 189
K +R +G+ S I + + ++++ ++S+ +L R AL
Sbjct: 306 AKEKTLRPNGLPES---------LIRYDARQKDIATNSVTELVEAVKRPRALSESTNQHP 356
Query: 190 IEDSCEASDLEKRKAATAIDNILS------------VLTHYSQLT-GRLVCGKRCSLPGM 236
+ E D + A +N++ + S++ + R S G+
Sbjct: 357 FKRKSETDDPPAKPARRMSENVVPSGRRNSGGGRRNSMQRISEVPEKKQTKSSRLSFMGI 416
Query: 237 GFISSSL------YISLG------------------------------------RIKQSF 254
S+SL +I G RI+++F
Sbjct: 417 KKKSASLDESIDGFIEYGEEDDEISDRDERPESVDDKVRQKEMRKGMDLATTLERIEKNF 476
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
V+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD T + +I+ +I +
Sbjct: 477 VITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPTTVKKIRAAIDNQTE 536
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV+++NY K FWN+ H+ P+R+ G+V
Sbjct: 537 VTVQLINYTKSGKKFWNIFHLQPMRDQKGEV 567
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 76/121 (62%), Gaps = 3/121 (2%)
Query: 226 VCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVV 285
V G R +P +S L +L +Q+FV+ D PD P++YAS F +TGY EVV
Sbjct: 173 VAGGRGGIPR---VSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVV 229
Query: 286 GQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
G+NCRFL G TD L +I+E++ R+LNY+KD +SFWNLL I+PI++ SGKV
Sbjct: 230 GRNCRFLQGSGTDADELAKIRETLAAGNNYCGRLLNYKKDGTSFWNLLTIAPIKDESGKV 289
Query: 346 L 346
L
Sbjct: 290 L 290
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+ T+ +IR
Sbjct: 469 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPTTVKKIR 528
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
AI + + V L+NY K G FW +F + + ++ G +F+ VQ+
Sbjct: 529 AAIDNQTEVTVQLINYTKSGKKFWNIFHLQPMRDQK-GEVQYFIGVQL 575
>gi|307109021|gb|EFN57260.1| hypothetical protein CHLNCDRAFT_6687, partial [Chlorella
variabilis]
Length = 730
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/334 (32%), Positives = 171/334 (51%), Gaps = 54/334 (16%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMF-QGPRTNRRTIME 81
AL +L +F + D + P+++AS GF M+G+S+ E++G+N F QGP T+ + + +
Sbjct: 11 ALAKLRQTFVVADATHPDCPLIYASEGFYHMTGYSQEELVGKNWYSFLQGPDTDPQAVRQ 70
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
+ EA+ RP+ + LL Y+K G FW + M+ + E G V VQV +
Sbjct: 71 LDEAVEAGRPLTLRLLCYRKSGKAFWNMLTMTPIHDDE-GNVVKIVGVQVDV-------- 121
Query: 142 SGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDLEK 201
SR E C C+ L L + D+ L++
Sbjct: 122 -----------SRTTEGRAVQC----CAQGL-----PLLVHYDER------------LKE 149
Query: 202 RKAATAIDNILSVLT-HYSQLTGRLVCGKRC---SLPGMGFISSS--------LYISLGR 249
R A A + +++ ++ S+L+ G R S+ G G + L ++ R
Sbjct: 150 RVAWPATEEVMAAVSPRASRLSRASHHGPRSFSLSMGGAGGEEEACPHRAALDLATTIER 209
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
I+ +FV+ DP LPD P+V+ASD+FL+LTGY R +++G+NCRFL G TD + +++ +I
Sbjct: 210 IQTNFVISDPSLPDCPIVFASDSFLQLTGYAREDILGRNCRFLQGPGTDRATVNELRAAI 269
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+ CTVR+LNY K FWNLL ++PIR+ G
Sbjct: 270 LAGRECTVRMLNYTKAGKPFWNLLTVAPIRDGLG 303
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 70/107 (65%), Gaps = 1/107 (0%)
Query: 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNC-RFLNGVDTDT 299
+ L +L +++Q+FV+ D PD P++YAS+ F +TGY + E+VG+N FL G DTD
Sbjct: 6 AQLTSALAKLRQTFVVADATHPDCPLIYASEGFYHMTGYSQEELVGKNWYSFLQGPDTDP 65
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ Q+ E+++ + T+R+L YRK +FWN+L ++PI + G V+
Sbjct: 66 QAVRQLDEAVEAGRPLTLRLLCYRKSGKAFWNMLTMTPIHDDEGNVV 112
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 68/107 (63%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
E++ +R L + ++ + +F I+DPS+ PIVFAS FL+++G++R +I+GRN R
Sbjct: 192 EEACPHRAALDLATTIERIQTNFVISDPSLPDCPIVFASDSFLQLTGYAREDILGRNCRF 251
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLV 115
QGP T+R T+ E+R AI R V +LNY K G PFW L ++ +
Sbjct: 252 LQGPGTDRATVNELRAAILAGRECTVRMLNYTKAGKPFWNLLTVAPI 298
>gi|449525938|ref|XP_004169973.1| PREDICTED: phototropin-2-like [Cucumis sativus]
Length = 876
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 103/333 (30%), Positives = 161/333 (48%), Gaps = 29/333 (8%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L L ++ I+D + +PI+FAS FL M+G++ E+IGRN R QGP T++ + +IR
Sbjct: 122 LSSLQLTYVISDATKPDYPIMFASNRFLAMTGYTLDEVIGRNCRFLQGPETDKNEVAKIR 181
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143
AIR+ LLNYKK+GTPFW L + V GR F+ +QV I
Sbjct: 182 HAIRKGNSYCGKLLNYKKNGTPFWNLLTVGPV-KDSHGRIIRFIGMQVEIAKDIEGMKKS 240
Query: 144 MSYSEDGGGSRLREIVF-------------GSCRREVCSDSLLDLDRVLALD-----SDD 185
MS +E +R IV + + + D ALD +D+
Sbjct: 241 MSITEVQAERAIRSIVEVDIVKSLRSHWHDADTKHQEPEKTNADYASSKALDKNFTTADN 300
Query: 186 TGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYI 245
++ S +E R+ T ++ L + G V + + + L
Sbjct: 301 QKARFKERTLGSAVE-REEKTVVETYL-----FKPKDGDHVAKRERDIRQ----GTELAT 350
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L RIK+ F + +P LPD P+++AS FL T Y EV+G+N FL G +TD + +I
Sbjct: 351 TLERIKKIFFITNPRLPDNPIIFASHRFLDSTEYTLEEVLGRNFCFLQGPETDQATVSKI 410
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
++I+ ++ T++I+NY K F NL H+ P+
Sbjct: 411 NDAIEEQREITLQIINYTKSGKKFSNLFHLQPM 443
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 70/100 (70%)
Query: 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIK 306
L ++ ++V+ D PD P+++AS+ FL +TGY +EV+G+NCRFL G +TD + +I+
Sbjct: 122 LSSLQLTYVISDATKPDYPIMFASNRFLAMTGYTLDEVIGRNCRFLQGPETDKNEVAKIR 181
Query: 307 ESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+I+ + ++LNY+K+ + FWNLL + P++++ G+++
Sbjct: 182 HAIRKGNSYCGKLLNYKKNGTPFWNLLTVGPVKDSHGRII 221
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 73/136 (53%), Gaps = 3/136 (2%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + F IT+P + +PI+FAS FL + ++ E++GRN QGP T++ T+ +I
Sbjct: 352 LERIKKIFFITNPRLPDNPIIFASHRFLDSTEYTLEEVLGRNFCFLQGPETDQATVSKIN 411
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143
+AI E+R I + ++NY K G F LF + + + G +F+ VQ + +K RN
Sbjct: 412 DAIEEQREITLQIINYTKSGKKFSNLFHLQPMCDQMKGELQYFIGVQ---IHQKPSRNRL 468
Query: 144 MSYSEDGGGSRLREIV 159
+E G + +
Sbjct: 469 FDRTEHGSAKLAKAVA 484
>gi|449453764|ref|XP_004144626.1| PREDICTED: phototropin-2-like [Cucumis sativus]
Length = 943
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 103/333 (30%), Positives = 161/333 (48%), Gaps = 29/333 (8%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L L ++ I+D + +PI+FAS FL M+G++ E+IGRN R QGP T++ + +IR
Sbjct: 189 LSSLQLTYVISDATKPDYPIMFASNRFLAMTGYTLDEVIGRNCRFLQGPETDKNEVAKIR 248
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143
AIR+ LLNYKK+GTPFW L + V GR F+ +QV I
Sbjct: 249 HAIRKGNSYCGKLLNYKKNGTPFWNLLTVGPV-KDSHGRIIRFIGMQVEIAKDIEGMKKS 307
Query: 144 MSYSEDGGGSRLREIVF-------------GSCRREVCSDSLLDLDRVLALD-----SDD 185
MS +E +R IV + + + D ALD +D+
Sbjct: 308 MSITEVQAERAIRSIVEVDIVKSLRSHWHDADTKHQEPEKTNADYASSKALDKNFTTADN 367
Query: 186 TGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYI 245
++ S +E R+ T ++ L + G V + + + L
Sbjct: 368 QKARFKERTLGSAVE-REEKTVVETYL-----FKPKDGDHVAKRERDIRQ----GTELAT 417
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L RIK+ F + +P LPD P+++AS FL T Y EV+G+N FL G +TD + +I
Sbjct: 418 TLERIKKIFFITNPRLPDNPIIFASHRFLDSTEYTLEEVLGRNFCFLQGPETDQATVSKI 477
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
++I+ ++ T++I+NY K F NL H+ P+
Sbjct: 478 NDAIEEQREITLQIINYTKSGKKFSNLFHLQPM 510
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 70/100 (70%)
Query: 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIK 306
L ++ ++V+ D PD P+++AS+ FL +TGY +EV+G+NCRFL G +TD + +I+
Sbjct: 189 LSSLQLTYVISDATKPDYPIMFASNRFLAMTGYTLDEVIGRNCRFLQGPETDKNEVAKIR 248
Query: 307 ESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+I+ + ++LNY+K+ + FWNLL + P++++ G+++
Sbjct: 249 HAIRKGNSYCGKLLNYKKNGTPFWNLLTVGPVKDSHGRII 288
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 73/136 (53%), Gaps = 3/136 (2%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + F IT+P + +PI+FAS FL + ++ E++GRN QGP T++ T+ +I
Sbjct: 419 LERIKKIFFITNPRLPDNPIIFASHRFLDSTEYTLEEVLGRNFCFLQGPETDQATVSKIN 478
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143
+AI E+R I + ++NY K G F LF + + + G +F+ VQ + +K RN
Sbjct: 479 DAIEEQREITLQIINYTKSGKKFSNLFHLQPMCDQMKGELQYFIGVQ---IHQKPSRNRL 535
Query: 144 MSYSEDGGGSRLREIV 159
+E G + +
Sbjct: 536 FDRTEHGSAKLAKAVA 551
>gi|219363497|ref|NP_001136819.1| hypothetical protein [Zea mays]
gi|194697234|gb|ACF82701.1| unknown [Zea mays]
gi|414875950|tpg|DAA53081.1| TPA: hypothetical protein ZEAMMB73_525936 [Zea mays]
gi|414875951|tpg|DAA53082.1| TPA: hypothetical protein ZEAMMB73_525936 [Zea mays]
gi|414875952|tpg|DAA53083.1| TPA: hypothetical protein ZEAMMB73_525936 [Zea mays]
gi|414875953|tpg|DAA53084.1| TPA: hypothetical protein ZEAMMB73_525936 [Zea mays]
gi|414875954|tpg|DAA53085.1| TPA: hypothetical protein ZEAMMB73_525936 [Zea mays]
gi|414875955|tpg|DAA53086.1| TPA: hypothetical protein ZEAMMB73_525936 [Zea mays]
Length = 207
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 89/135 (65%)
Query: 8 IEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGR 67
S RY+ WV E LDELP SF +TDP++ GHPIV+ASRG ++G++ +++GRN R
Sbjct: 20 FASSLTARYSDWVLETLDELPGSFLLTDPALPGHPIVYASRGLAALTGYAPRDVLGRNAR 79
Query: 68 MFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
+FQG T+R T+ +REA+R RP + +LNY++DG P W+L ++ +F DG HF+
Sbjct: 80 LFQGAATDRATVAGVREAVRAHRPHQAAILNYRRDGAPHWVLLHLAPLFHARDGTLLHFL 139
Query: 128 AVQVPIVSRKHMRNS 142
AVQVPI R +
Sbjct: 140 AVQVPIAPAAVARGA 154
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 57/96 (59%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + SF+L DP LP P+VYAS LTGY +V+G+N R G TD + +
Sbjct: 35 TLDELPGSFLLTDPALPGHPIVYASRGLAALTGYAPRDVLGRNARLFQGAATDRATVAGV 94
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNA 341
+E+++ + ILNYR+D + W LLH++P+ +A
Sbjct: 95 REAVRAHRPHQAAILNYRRDGAPHWVLLHLAPLFHA 130
>gi|326525301|dbj|BAK07920.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 197
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 89/128 (69%)
Query: 8 IEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGR 67
+ S RY+ WV E LDEL SF +TDP++ GHPIV+ASRG ++G+ R +++GRN R
Sbjct: 9 LAASLTARYSEWVLEELDELQGSFLLTDPAMPGHPIVYASRGLASLTGYPRRDLLGRNAR 68
Query: 68 MFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
+FQG T+R + +REA+R +R +V +LNY++DG P W+L ++ VF DGR HF+
Sbjct: 69 LFQGAATDRAAVSGLREAVRAQRAHQVAILNYRRDGAPHWVLLHLAPVFHAADGRVLHFL 128
Query: 128 AVQVPIVS 135
AVQVPI +
Sbjct: 129 AVQVPIAA 136
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 66/101 (65%), Gaps = 1/101 (0%)
Query: 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIK 306
L ++ SF+L DP +P P+VYAS LTGY R +++G+N R G TD + ++
Sbjct: 25 LDELQGSFLLTDPAMPGHPIVYASRGLASLTGYPRRDLLGRNARLFQGAATDRAAVSGLR 84
Query: 307 ESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNAS-GKVL 346
E+++ ++A V ILNYR+D + W LLH++P+ +A+ G+VL
Sbjct: 85 EAVRAQRAHQVAILNYRRDGAPHWVLLHLAPVFHAADGRVL 125
>gi|255582071|ref|XP_002531832.1| serine/threonine protein kinase, putative [Ricinus communis]
gi|223528528|gb|EEF30552.1| serine/threonine protein kinase, putative [Ricinus communis]
Length = 1006
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 78/112 (69%)
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G+ +S + +L +Q+FV+ D PD P++YAS F K+TGY EV+G+NCRFL G
Sbjct: 190 GIPRVSEDIKNALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQG 249
Query: 295 VDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
DTD + +I+E++Q+E + R+LNY+KD + FWNLL ISPI++ SGKVL
Sbjct: 250 ADTDPEDVAKIREALQSENSYCGRLLNYKKDGTPFWNLLTISPIKDESGKVL 301
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 74/103 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 484 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATV 543
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+E+I + TV+++NY K FWNL H+ P+R+ G+V
Sbjct: 544 RKIREAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEV 586
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+ T+ +IR
Sbjct: 488 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIR 547
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
EAI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 548 EAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQK-GEVQYFIGVQL 594
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 69/114 (60%), Gaps = 1/114 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ AL +F ++D + +PI++AS GF KM+G++ E+IGRN R QG T+ +
Sbjct: 198 IKNALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDV 257
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+IREA++ E LLNYKKDGTPFW L +S + E G+ ++ +QV +
Sbjct: 258 AKIREALQSENSYCGRLLNYKKDGTPFWNLLTISPI-KDESGKVLKYIGMQVEV 310
>gi|197257792|gb|ACH56106.1| phototropin [synthetic construct]
Length = 139
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 73/103 (70%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+QSFV+ DP LPD P+V+ASD F++ TGY +E++G+NCRFL G TD +
Sbjct: 5 LASTLERIEQSFVITDPSLPDHPIVFASDGFMEFTGYSVDEILGRNCRFLQGPKTDRAAV 64
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+E+I+ + CTVR+LNY K FWN+ ++P+R+ G V
Sbjct: 65 AKIREAIENGEECTVRLLNYTKTGEEFWNMFTLAPVRDEQGIV 107
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 77/130 (59%), Gaps = 5/130 (3%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + SF ITDPS+ HPIVFAS GF++ +G+S EI+GRN R QGP+T+R + +IR
Sbjct: 9 LERIEQSFVITDPSLPDHPIVFASDGFMEFTGYSVDEILGRNCRFLQGPKTDRAAVAKIR 68
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR----KHM 139
EAI V LLNY K G FW +F ++ V E G F VQV I + +H
Sbjct: 69 EAIENGEECTVRLLNYTKTGEEFWNMFTLAPV-RDEQGIVRFFAGVQVDITAHDPQTEHE 127
Query: 140 RNSGMSYSED 149
+ +++ E+
Sbjct: 128 TVAEITFKEE 137
>gi|60099454|dbj|BAD89966.1| phototropin [Phaseolus vulgaris]
Length = 976
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 75/103 (72%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 449 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATV 508
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+E+I T+ TV+++NY K FWNL H+ P+R+ G+V
Sbjct: 509 RKIREAIDTQTDVTVQLINYTKTGKKFWNLFHLQPMRDQKGEV 551
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 76/112 (67%)
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G+ +S L +L +Q+FV+ D PD P++YAS F K+TGY EV+G+NCRF+ G
Sbjct: 161 GIPRVSEDLRDALSAFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFMQG 220
Query: 295 VDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
DTD + +I+E++QT Q R+LNY+KD + FWNLL I+PI++ G+VL
Sbjct: 221 ADTDPDDVAKIREALQTGQTYCGRLLNYKKDGTPFWNLLTIAPIKDHDGRVL 272
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 10 QSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMF 69
Q R L + L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R
Sbjct: 439 QRKEKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFL 498
Query: 70 QGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAV 129
QGP T+ T+ +IREAI + + V L+NY K G FW LF + + ++ G +F+ V
Sbjct: 499 QGPETDPATVRKIREAIDTQTDVTVQLINYTKTGKKFWNLFHLQPMRDQK-GEVQYFIGV 557
Query: 130 QV 131
Q+
Sbjct: 558 QL 559
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 70/114 (61%), Gaps = 1/114 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF KM+G++ E+IGRN R QG T+ +
Sbjct: 169 LRDALSAFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFMQGADTDPDDV 228
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+IREA++ + LLNYKKDGTPFW L ++ + DGR F+ +QV +
Sbjct: 229 AKIREALQTGQTYCGRLLNYKKDGTPFWNLLTIAPI-KDHDGRVLKFIGMQVEV 281
>gi|399087808|ref|ZP_10753267.1| PAS domain S-box [Caulobacter sp. AP07]
gi|398031967|gb|EJL25334.1| PAS domain S-box [Caulobacter sp. AP07]
Length = 369
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 74/107 (69%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S ++ + + ++ DPH D P+++A+DAFLKLTGY +EV+G+NCRFL G DTD
Sbjct: 20 LSGPFAAAIRATRMAMIVTDPHQADNPIIFANDAFLKLTGYPHDEVIGRNCRFLQGPDTD 79
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+++E+I + V ILNYRKD SSFWN LH+SP+R+ +G+V
Sbjct: 80 PVQADRVREAIAKGEDAVVDILNYRKDGSSFWNALHVSPVRDKAGEV 126
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ +TDP + +PI+FA+ FLK++G+ E+IGRN R QGP T+ +REAI +
Sbjct: 34 AMIVTDPHQADNPIIFANDAFLKLTGYPHDEVIGRNCRFLQGPDTDPVQADRVREAIAKG 93
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
V++LNY+KDG+ FW +S V K G +F A Q+ + K +
Sbjct: 94 EDAVVDILNYRKDGSSFWNALHVSPVRDKA-GEVAYFFASQLDVSDSKRL 142
>gi|356558407|ref|XP_003547498.1| PREDICTED: phototropin-1-like [Glycine max]
Length = 978
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 74/103 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 450 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATV 509
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+E+I + TV+++NY K FWNL H+ P+R+ G+V
Sbjct: 510 RKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEV 552
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 74/108 (68%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
IS + +L +Q+FV+ D PD P++YAS F K+TGY EV+G+NCRFL G DTD
Sbjct: 152 ISEDVMGALSAFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGADTD 211
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+E++Q+ + R+LNY+KD + FWNLL ISPI++ GKVL
Sbjct: 212 PEDVAKIREALQSGKIYCGRLLNYKKDGTPFWNLLTISPIKDEDGKVL 259
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 74/123 (60%), Gaps = 1/123 (0%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
E+ R L + L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R
Sbjct: 439 EKQREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRF 498
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QGP T+ T+ +IREAI + + V L+NY K G FW LF + + ++ G +F+
Sbjct: 499 LQGPETDPATVRKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GEVQYFIG 557
Query: 129 VQV 131
VQ+
Sbjct: 558 VQL 560
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 3/120 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D + +PI++AS GF KM+G++ E+IGRN R QG T+ + +I
Sbjct: 159 ALSAFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDVAKI 218
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
REA++ + LLNYKKDGTPFW L +S + EDG+ F+ +QV + KH S
Sbjct: 219 REALQSGKIYCGRLLNYKKDGTPFWNLLTISPI-KDEDGKVLKFIGMQVEV--SKHTEGS 275
>gi|356550222|ref|XP_003543487.1| PREDICTED: phototropin-1-like [Glycine max]
Length = 982
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 74/103 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 450 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATV 509
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+E+I + TV+++NY K FWNL H+ P+R+ G+V
Sbjct: 510 NKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEV 552
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 72/108 (66%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
IS + +L +Q+FV+ D D P++YAS F K+TGY EV+G+NCRFL G DTD
Sbjct: 154 ISEDVMGALSAFQQTFVVSDATKADYPILYASAGFFKMTGYKSKEVIGRNCRFLQGADTD 213
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+E++Q + R+LNY+KD + FWNLL ISPI++ GKVL
Sbjct: 214 PEDVAKIREALQAGKIYCGRLLNYKKDGTPFWNLLTISPIKDEDGKVL 261
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 74/123 (60%), Gaps = 1/123 (0%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
E+ R L + L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R
Sbjct: 439 EKQREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRF 498
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QGP T+ T+ +IREAI + + V L+NY K G FW LF + + ++ G +F+
Sbjct: 499 LQGPETDPATVNKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GEVQYFIG 557
Query: 129 VQV 131
VQ+
Sbjct: 558 VQL 560
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 3/120 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D + + +PI++AS GF KM+G+ E+IGRN R QG T+ + +I
Sbjct: 161 ALSAFQQTFVVSDATKADYPILYASAGFFKMTGYKSKEVIGRNCRFLQGADTDPEDVAKI 220
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
REA++ + LLNYKKDGTPFW L +S + EDG+ F+ +QV + KH S
Sbjct: 221 REALQAGKIYCGRLLNYKKDGTPFWNLLTISPI-KDEDGKVLKFIGMQVEV--SKHTEGS 277
>gi|60099456|dbj|BAD89967.1| phototropin [Phaseolus vulgaris]
Length = 987
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 74/103 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 455 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATV 514
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+E+I + TV+++NY K FWNL H+ P+R+ G+V
Sbjct: 515 RKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEV 557
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 73/108 (67%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
IS + +L +Q+FV+ D PD P++YAS F K+TGY EV+G+NCRFL G +TD
Sbjct: 155 ISEDVMGALSAFQQTFVVSDATKPDCPILYASAGFFKMTGYTSKEVIGRNCRFLQGAETD 214
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+E+++ + R+LNY+KD + FWNLL I+PI++ GKVL
Sbjct: 215 CGDVAKIREALEAGKIYCGRLLNYKKDGTPFWNLLTITPIKDEDGKVL 262
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 74/123 (60%), Gaps = 1/123 (0%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
E+ R L + L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R
Sbjct: 444 EKQREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRF 503
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QGP T+ T+ +IREAI + + V L+NY K G FW LF + + ++ G +F+
Sbjct: 504 LQGPETDPATVRKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GEVQYFIG 562
Query: 129 VQV 131
VQ+
Sbjct: 563 VQL 565
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 74/131 (56%), Gaps = 7/131 (5%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D + PI++AS GF KM+G++ E+IGRN R QG T+ + +I
Sbjct: 162 ALSAFQQTFVVSDATKPDCPILYASAGFFKMTGYTSKEVIGRNCRFLQGAETDCGDVAKI 221
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI------VSR 136
REA+ + LLNYKKDGTPFW L ++ + EDG+ F+ + V + +
Sbjct: 222 REALEAGKIYCGRLLNYKKDGTPFWNLLTITPI-KDEDGKVLKFIGMLVEVSKHTEGLKE 280
Query: 137 KHMRNSGMSYS 147
K +R +G+ S
Sbjct: 281 KTLRPNGLPES 291
>gi|225435157|ref|XP_002281752.1| PREDICTED: phototropin-1-like [Vitis vinifera]
Length = 1004
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 74/103 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 475 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATV 534
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+E+I + TV+++NY K FWNL H+ P+R+ G+V
Sbjct: 535 RKIREAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEV 577
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 71/108 (65%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D PD P++YAS F K+TGY EV+G+NCRFL G TD
Sbjct: 195 VSEDLKDALSTFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGSGTD 254
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+E++ + R+LNY+KD + FWNLL ISPI++ +G VL
Sbjct: 255 PEDVAKIREALHAGNSYCGRLLNYKKDGTPFWNLLTISPIKDENGNVL 302
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+ T+ +IR
Sbjct: 479 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIR 538
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
EAI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 539 EAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQK-GEVQYFIGVQL 585
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 73/132 (55%), Gaps = 3/132 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF KM+G++ E+IGRN R QG T+ +
Sbjct: 199 LKDALSTFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGSGTDPEDV 258
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+IREA+ LLNYKKDGTPFW L +S + E+G F+ +QV + KH
Sbjct: 259 AKIREALHAGNSYCGRLLNYKKDGTPFWNLLTISPI-KDENGNVLKFIGMQVEVS--KHT 315
Query: 140 RNSGMSYSEDGG 151
S + G
Sbjct: 316 EGSKEKMTRPNG 327
>gi|12040650|gb|AAB41023.2| phototropin-like protein PsPK4 [Pisum sativum]
Length = 976
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 74/103 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 439 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGKNCRFLQGPETDPATV 498
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+E+I + TV+++NY K FWNL H+ P+R+ G+V
Sbjct: 499 RKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDHKGEV 541
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 74/112 (66%)
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G +S L +L +Q+FV+ D PD P++YAS F K+TGY EV+G+NCRFL G
Sbjct: 148 GFPRVSEDLKDALSAFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQG 207
Query: 295 VDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
DTD + +I+E+++ ++ R+LNY+KD + FWNLL ISPI++ G VL
Sbjct: 208 ADTDPDDVARIREALEGGKSFCGRLLNYKKDGTPFWNLLTISPIKDDDGNVL 259
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 71/117 (60%), Gaps = 1/117 (0%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R L + L+ + +F ITDP + +PI+FAS FL+++ +SR EI+G+N R QGP T
Sbjct: 434 RKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGKNCRFLQGPET 493
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+ T+ +IREAI + + V L+NY K G FW LF + + + G +F+ VQ+
Sbjct: 494 DPATVRKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDHK-GEVQYFIGVQL 549
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 73/134 (54%), Gaps = 7/134 (5%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF KM+G++ E+IGRN R QG T+ +
Sbjct: 156 LKDALSAFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPDDV 215
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI------ 133
IREA+ + LLNYKKDGTPFW L +S + +DG + + V +
Sbjct: 216 ARIREALEGGKSFCGRLLNYKKDGTPFWNLLTISPI-KDDDGNVLKLIGMLVEVNKHTEG 274
Query: 134 VSRKHMRNSGMSYS 147
K +R +G+ S
Sbjct: 275 SKEKKLRPNGLPES 288
>gi|20338415|gb|AAM15725.1| phototropin 1 [Pisum sativum]
Length = 976
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 74/103 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 439 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGKNCRFLQGPETDPATV 498
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+E+I + TV+++NY K FWNL H+ P+R+ G+V
Sbjct: 499 RKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDHKGEV 541
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 74/112 (66%)
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G +S L +L +Q+FV+ D PD P++YAS F K+TGY EV+G+NCRFL G
Sbjct: 148 GFPRVSEDLKDALSAFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQG 207
Query: 295 VDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
DTD + +I+E+++ ++ R+LNY+KD + FWNLL ISPI++ G VL
Sbjct: 208 ADTDPDDVARIREALEGGKSFCGRLLNYKKDGTPFWNLLTISPIKDDDGNVL 259
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 71/117 (60%), Gaps = 1/117 (0%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R L + L+ + +F ITDP + +PI+FAS FL+++ +SR EI+G+N R QGP T
Sbjct: 434 RKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGKNCRFLQGPET 493
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+ T+ +IREAI + + V L+NY K G FW LF + + + G +F+ VQ+
Sbjct: 494 DPATVRKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDHK-GEVQYFIGVQL 549
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 3/123 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF KM+G++ E+IGRN R QG T+ +
Sbjct: 156 LKDALSAFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPDDV 215
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
IREA+ + LLNYKKDGTPFW L +S + +DG + + V + KH
Sbjct: 216 ARIREALEGGKSFCGRLLNYKKDGTPFWNLLTISPI-KDDDGNVLKLIGMLVEV--NKHT 272
Query: 140 RNS 142
S
Sbjct: 273 EGS 275
>gi|449460993|ref|XP_004148228.1| PREDICTED: phototropin-1-like [Cucumis sativus]
Length = 952
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 75/103 (72%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD T +
Sbjct: 422 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDRTTV 481
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I + TV+++NY K FWNL H+ P+R+ G+V
Sbjct: 482 KKIRDAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEV 524
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 75/112 (66%)
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G+ +S L +L +Q+FV+ D PD P++YAS F K+TGY EV+G+NCRFL G
Sbjct: 117 GIPRVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQG 176
Query: 295 VDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
DTD + +I+E++Q + R+LNY+KD + FWNLL ISPI++ GKVL
Sbjct: 177 ADTDPEDVAKIREALQAGTSYCGRLLNYKKDGTPFWNLLTISPIKDDDGKVL 228
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+R T+ +IR
Sbjct: 426 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDRTTVKKIR 485
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 486 DAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQK-GEVQYFIGVQL 532
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 69/114 (60%), Gaps = 1/114 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF KM+G++ E+IGRN R QG T+ +
Sbjct: 125 LKDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDV 184
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+IREA++ LLNYKKDGTPFW L +S + +DG+ + +QV +
Sbjct: 185 AKIREALQAGTSYCGRLLNYKKDGTPFWNLLTISPI-KDDDGKVLKLIGMQVEV 237
>gi|46518266|dbj|BAD16729.1| phototropin 2 [Adiantum capillus-veneris]
gi|46518268|dbj|BAD16730.1| phototropin 2 [Adiantum capillus-veneris]
Length = 1019
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 76/103 (73%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G DTD +
Sbjct: 483 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEIIGRNCRFLQGQDTDQKTV 542
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I+ ++ TV++LNY K FWNL H+ P+R+ G++
Sbjct: 543 QKIRDAIREQREITVQLLNYTKTGKRFWNLFHLQPMRDQKGEL 585
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D PD P++YAS F K+TGY EV+G+NCRFL G DTD
Sbjct: 208 VSKDLKDALETFQQTFVVSDATRPDYPILYASAGFFKMTGYSSKEVIGRNCRFLQGADTD 267
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+ES+ + R+LNY+KD ++FWNLL I+PI++ G VL
Sbjct: 268 PDDVERIRESLAEGKNYCGRLLNYKKDGTAFWNLLTIAPIKDEEGNVL 315
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EIIGRN R QG T+++T+ +IR
Sbjct: 487 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEIIGRNCRFLQGQDTDQKTVQKIR 546
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AIRE+R I V LLNY K G FW LF + + ++ G +F+ VQ+
Sbjct: 547 DAIREQREITVQLLNYTKTGKRFWNLFHLQPMRDQK-GELQYFIGVQL 593
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 76/134 (56%), Gaps = 7/134 (5%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL+ +F ++D + +PI++AS GF KM+G+S E+IGRN R QG T+ +
Sbjct: 212 LKDALETFQQTFVVSDATRPDYPILYASAGFFKMTGYSSKEVIGRNCRFLQGADTDPDDV 271
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR--- 136
IRE++ E + LLNYKKDGT FW L ++ + E+G F+ +QV +
Sbjct: 272 ERIRESLAEGKNYCGRLLNYKKDGTAFWNLLTIAPI-KDEEGNVLKFIGMQVEVSKHTEG 330
Query: 137 ---KHMRNSGMSYS 147
K +R +G+ S
Sbjct: 331 HKVKALRPNGLPES 344
>gi|24899170|dbj|BAC23099.1| phototropin [Vicia faba]
Length = 970
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 74/103 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 433 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGKNCRFLQGQETDPATV 492
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+E+I + TV+++NY K FWNL H+ P+R+ G+V
Sbjct: 493 RKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDHKGEV 535
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 74/112 (66%)
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G +S L +L +Q+FV+ D PD P++YAS F K+TGY EV+G+NCRFL G
Sbjct: 143 GFPRVSDDLKDALSAFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQG 202
Query: 295 VDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
DTD + +I+E+++ ++ R+LNY+KD + FWNLL ISPI++ G VL
Sbjct: 203 ADTDPNDVARIREALEGGKSFCGRLLNYKKDGTPFWNLLTISPIKDDDGNVL 254
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R L + L+ + +F ITDP + +PI+FAS FL+++ +SR EI+G+N R QG T
Sbjct: 428 RKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGKNCRFLQGQET 487
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+ T+ +IREAI + + V L+NY K G FW LF + + + G +F+ VQ+
Sbjct: 488 DPATVRKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDHK-GEVQYFIGVQL 543
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 3/123 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF KM+G++ E+IGRN R QG T+ +
Sbjct: 151 LKDALSAFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPNDV 210
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
IREA+ + LLNYKKDGTPFW L +S + +DG + + V + KH
Sbjct: 211 ARIREALEGGKSFCGRLLNYKKDGTPFWNLLTISPI-KDDDGNVLKLIGMLVEV--NKHT 267
Query: 140 RNS 142
S
Sbjct: 268 EGS 270
>gi|297746173|emb|CBI16229.3| unnamed protein product [Vitis vinifera]
Length = 958
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 74/103 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 429 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATV 488
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+E+I + TV+++NY K FWNL H+ P+R+ G+V
Sbjct: 489 RKIREAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEV 531
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 71/108 (65%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D PD P++YAS F K+TGY EV+G+NCRFL G TD
Sbjct: 149 VSEDLKDALSTFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGSGTD 208
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+E++ + R+LNY+KD + FWNLL ISPI++ +G VL
Sbjct: 209 PEDVAKIREALHAGNSYCGRLLNYKKDGTPFWNLLTISPIKDENGNVL 256
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+ T+ +IR
Sbjct: 433 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIR 492
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
EAI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 493 EAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQK-GEVQYFIGVQL 539
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 73/132 (55%), Gaps = 3/132 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF KM+G++ E+IGRN R QG T+ +
Sbjct: 153 LKDALSTFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGSGTDPEDV 212
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+IREA+ LLNYKKDGTPFW L +S + E+G F+ +QV + KH
Sbjct: 213 AKIREALHAGNSYCGRLLNYKKDGTPFWNLLTISPI-KDENGNVLKFIGMQVEV--SKHT 269
Query: 140 RNSGMSYSEDGG 151
S + G
Sbjct: 270 EGSKEKMTRPNG 281
>gi|242081217|ref|XP_002445377.1| hypothetical protein SORBIDRAFT_07g014860 [Sorghum bicolor]
gi|241941727|gb|EES14872.1| hypothetical protein SORBIDRAFT_07g014860 [Sorghum bicolor]
Length = 890
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 77/103 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD + +
Sbjct: 362 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGAETDMSTV 421
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+E+I+ ++ TV+++NY K FWNL H+ P+R+ G++
Sbjct: 422 DKIREAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQKGEL 464
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 76/108 (70%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L ++Q+FV+ D PD P++YAS F +TGY +VVG+NCRFL G DTD
Sbjct: 90 VSRELKDALSSLQQTFVVSDATRPDCPIIYASAGFYTMTGYAAKDVVGRNCRFLQGPDTD 149
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+++++T ++ R+LNYRKD + FWN+L ++PIR+ +GKV+
Sbjct: 150 MDEVAKIRDAVKTGRSFCGRLLNYRKDGTPFWNMLTVTPIRDDNGKVI 197
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QG T+ T+ +IR
Sbjct: 366 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGAETDMSTVDKIR 425
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
EAIRE++ I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 426 EAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 472
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 85/154 (55%), Gaps = 7/154 (4%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + +AL L +F ++D + PI++AS GF M+G++ +++GRN R QGP T
Sbjct: 89 RVSRELKDALSSLQQTFVVSDATRPDCPIIYASAGFYTMTGYAAKDVVGRNCRFLQGPDT 148
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI- 133
+ + +IR+A++ R LLNY+KDGTPFW + ++ + ++G+ F+ +QV +
Sbjct: 149 DMDEVAKIRDAVKTGRSFCGRLLNYRKDGTPFWNMLTVTPI-RDDNGKVIKFIGMQVEVS 207
Query: 134 -----VSRKHMRNSGMSYSEDGGGSRLREIVFGS 162
+S K MR + M S R +E S
Sbjct: 208 KYTEGLSEKRMRPNEMPVSLIHYDDRQKETAMSS 241
>gi|449521880|ref|XP_004167957.1| PREDICTED: LOW QUALITY PROTEIN: phototropin-1-like, partial
[Cucumis sativus]
Length = 760
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 75/103 (72%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD T +
Sbjct: 230 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDRTTV 289
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I + TV+++NY K FWNL H+ P+R+ G+V
Sbjct: 290 KKIRDAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEV 332
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+R T+ +IR
Sbjct: 234 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDRTTVKKIR 293
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 294 DAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQK-GEVQYFIGVQL 340
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 40/57 (70%)
Query: 290 RFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
RFL G DTD + +I+E++Q + R+LNY+KD + FWNLL ISPI++ GKVL
Sbjct: 1 RFLQGADTDPEDVAKIREALQAGTSYCGRLLNYKKDGTPFWNLLTISPIKDDDGKVL 57
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 67 RMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHF 126
R QG T+ + +IREA++ LLNYKKDGTPFW L +S + +DG+
Sbjct: 1 RFLQGADTDPEDVAKIREALQAGTSYCGRLLNYKKDGTPFWNLLTISPI-KDDDGKVLKL 59
Query: 127 VAVQVPIVSR------KHMRNSGMSYSEDGGGSRLREIVFGS 162
+ +QV + K +R +G+ S +R +E+ S
Sbjct: 60 IGMQVEVSKHTEGFKDKMVRPNGLPESLIRYDARQKEMATSS 101
>gi|224055599|ref|XP_002298559.1| predicted protein [Populus trichocarpa]
gi|222845817|gb|EEE83364.1| predicted protein [Populus trichocarpa]
Length = 977
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 74/103 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 448 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATV 507
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+E+I + TV+++NY K FWNL H+ P+R+ G+V
Sbjct: 508 RKIREAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEV 550
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 73/108 (67%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S + +L +Q+FV+ D PD P++YAS F K+TGY EV+G+NCRFL G TD
Sbjct: 163 VSEDIRNALSTFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGAGTD 222
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+E+++ E R+LNY+KD S FWNLL I+PI++ SGKVL
Sbjct: 223 PEDVAKIREALRGEGTYCGRLLNYKKDGSPFWNLLTIAPIKDDSGKVL 270
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+ T+ +IR
Sbjct: 452 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIR 511
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
EAI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 512 EAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQK-GEVQYFIGVQL 558
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 10/159 (6%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ AL +F ++D + +PI++AS GF KM+G++ E+IGRN R QG T+ +
Sbjct: 167 IRNALSTFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGAGTDPEDV 226
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIVSRKH 138
+IREA+R E LLNYKKDG+PFW L ++ + K+D G+ F+ + V + KH
Sbjct: 227 AKIREALRGEGTYCGRLLNYKKDGSPFWNLLTIAPI--KDDSGKVLKFIGMLVEV--SKH 282
Query: 139 MRNSGMSYSEDGG--GSRLREIVFGSCRREVCSDSLLDL 175
S G GS +R + + ++E+ + S+ +L
Sbjct: 283 TEGSKDKTLRPNGLPGSLIR---YDARQKEMATSSVTEL 318
>gi|6688928|emb|CAB65325.1| non-phototropic hypocotyl NPH1 [Oryza sativa Indica Group]
Length = 921
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 75/103 (72%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y+R E++G+NCRFL G +TD ++
Sbjct: 404 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRAIV 463
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I + TV+++NY K FWNL H+ P+R+ G V
Sbjct: 464 RKIRDAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDV 506
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 69/108 (63%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D P+ P++YAS F +TGY EVVG+NCRFL G TD
Sbjct: 123 VSEELRAALSAFQQTFVVSDATRPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTD 182
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I++++ RILNY+KD + FWNLL I+PI++ G++L
Sbjct: 183 PHEIDKIRQALANGSNYCGRILNYKKDGTPFWNLLTIAPIKDEDGRLL 230
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T+R + +IR
Sbjct: 408 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRAIVRKIR 467
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 468 DAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQL 514
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D + HPI++AS GF M+G++ E++GRN R QG T+ I +I
Sbjct: 130 ALSAFQQTFVVSDATRPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPHEIDKI 189
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R+A+ +LNYKKDGTPFW L ++ + EDGR F+ +QV +
Sbjct: 190 RQALANGSNYCGRILNYKKDGTPFWNLLTIAPI-KDEDGRLLKFIGMQVEV 239
>gi|62320280|dbj|BAD94575.1| nonphototropic hypocotyl 1 [Arabidopsis thaliana]
Length = 731
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 74/103 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD T +
Sbjct: 466 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDLTTV 525
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+ +I + TV+++NY K FWN+ H+ P+R+ G+V
Sbjct: 526 KKIRNAIDNQTEVTVQLINYTKSGKKFWNIFHLQPMRDQKGEV 568
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 76/121 (62%), Gaps = 3/121 (2%)
Query: 226 VCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVV 285
V G R +P +S L +L +Q+FV+ D PD P++YAS F +TGY EVV
Sbjct: 174 VPGGRSGIP---RVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVV 230
Query: 286 GQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
G+NCRFL G TD L +I+E++ RILNY+KD +SFWNLL I+PI++ SGKV
Sbjct: 231 GRNCRFLQGSGTDADELAKIRETLAAGNNYCGRILNYKKDGTSFWNLLTIAPIKDESGKV 290
Query: 346 L 346
L
Sbjct: 291 L 291
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+ T+ +IR
Sbjct: 470 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDLTTVKKIR 529
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
AI + + V L+NY K G FW +F + + ++ G +F+ VQ+
Sbjct: 530 NAIDNQTEVTVQLINYTKSGKKFWNIFHLQPMRDQK-GEVQYFIGVQL 576
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 103/204 (50%), Gaps = 22/204 (10%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF M+G++ E++GRN R QG T+ +
Sbjct: 188 LKDALSTFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDADEL 247
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI------ 133
+IRE + +LNYKKDGT FW L ++ + E G+ F+ +QV +
Sbjct: 248 AKIRETLAAGNNYCGRILNYKKDGTSFWNLLTIAPI-KDESGKVLKFIGMQVEVSKHTEG 306
Query: 134 VSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDL----DRVLALDSDDTGLE 189
K +R +G+ S I + + ++++ ++S+ +L R AL S+ T L
Sbjct: 307 AKEKALRPNGLPES---------LIRYDARQKDMATNSVTELVEAVKRPRAL-SESTNLH 356
Query: 190 -IEDSCEASDLEKRKAATAIDNIL 212
E+ +L K+ A +N++
Sbjct: 357 PFMAKSESDELPKKPARRMSENVV 380
>gi|414870626|tpg|DAA49183.1| TPA: putative phototropin family protein kinase [Zea mays]
Length = 703
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 77/103 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD + +
Sbjct: 379 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDMSTV 438
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+E+I+ ++ TV+++NY K FWNL H+ P+R+ G++
Sbjct: 439 DKIREAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQKGEL 481
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 76/111 (68%)
Query: 236 MGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295
M +S L +L ++Q+FV+ D PD P++YAS F +TGY EV G+NCRFL G
Sbjct: 98 MPRVSQELKDALSSLQQTFVVSDATRPDCPIIYASAGFYTMTGYTPKEVTGRNCRFLQGP 157
Query: 296 DTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
DTD + +I+++++T ++ R+LNYRKD + FWN+L ++PIR+ +GKV+
Sbjct: 158 DTDMNEVAKIRDAVKTGRSFCGRLLNYRKDGTPFWNMLTVTPIRDDNGKVI 208
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T+ T+ +IR
Sbjct: 383 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDMSTVDKIR 442
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
EAIRE++ I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 443 EAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 489
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 80/139 (57%), Gaps = 7/139 (5%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + +AL L +F ++D + PI++AS GF M+G++ E+ GRN R QGP T
Sbjct: 100 RVSQELKDALSSLQQTFVVSDATRPDCPIIYASAGFYTMTGYTPKEVTGRNCRFLQGPDT 159
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI- 133
+ + +IR+A++ R LLNY+KDGTPFW + ++ + ++G+ F+ +QV +
Sbjct: 160 DMNEVAKIRDAVKTGRSFCGRLLNYRKDGTPFWNMLTVTPI-RDDNGKVIKFIGMQVEVS 218
Query: 134 -----VSRKHMRNSGMSYS 147
+S K MR + M S
Sbjct: 219 KYTEGLSEKRMRPNEMPVS 237
>gi|226531740|ref|NP_001147477.1| phototropin-1 [Zea mays]
gi|195611646|gb|ACG27653.1| phototropin-1 [Zea mays]
Length = 899
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 77/103 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD + +
Sbjct: 373 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDMSTV 432
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+E+I+ ++ TV+++NY K FWNL H+ P+R+ G++
Sbjct: 433 DKIREAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQKGEL 475
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 76/111 (68%)
Query: 236 MGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295
M +S L +L ++Q+FV+ D PD P++YAS F +TGY EV G+NCRFL G
Sbjct: 90 MPRVSQELKDALSSLQQTFVVSDATRPDCPIIYASAGFYTMTGYTPKEVTGRNCRFLQGP 149
Query: 296 DTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
DTD + +I+++++T ++ R+LNYRKD + FWN+L ++PIR+ +GKV+
Sbjct: 150 DTDMNEVAKIRDAVKTGRSFCGRLLNYRKDGTPFWNMLTVTPIRDDNGKVI 200
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T+ T+ +IR
Sbjct: 377 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDMSTVDKIR 436
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
EAIRE++ I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 437 EAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 483
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 7/154 (4%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + +AL L +F ++D + PI++AS GF M+G++ E+ GRN R QGP T
Sbjct: 92 RVSQELKDALSSLQQTFVVSDATRPDCPIIYASAGFYTMTGYTPKEVTGRNCRFLQGPDT 151
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI- 133
+ + +IR+A++ R LLNY+KDGTPFW + ++ + ++G+ F+ +QV +
Sbjct: 152 DMNEVAKIRDAVKTGRSFCGRLLNYRKDGTPFWNMLTVTPI-RDDNGKVIKFIGMQVEVS 210
Query: 134 -----VSRKHMRNSGMSYSEDGGGSRLREIVFGS 162
+S K MR + M S R +E S
Sbjct: 211 KYTEGLSEKRMRPNEMPVSLIHYDDRQKETAMSS 244
>gi|333899393|ref|YP_004473266.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas fulva 12-X]
gi|333114658|gb|AEF21172.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas fulva 12-X]
Length = 534
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 76/104 (73%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ PD P+++A++AFL++TGY+ E+VGQNCRFL G +TD +V+
Sbjct: 27 FFAAVETTRMPMIVTDPNRPDNPIIFANNAFLEMTGYESEEIVGQNCRFLQGAETDRSVV 86
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
Q++E+I Q +V ++NYRKD S+FWN L ISP+ N +G+++
Sbjct: 87 AQVREAISKRQEVSVELINYRKDGSTFWNALFISPVYNDAGELI 130
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+FA+ FL+M+G+ EI+G+N R QG T+R + ++REAI + + +
Sbjct: 40 VTDPNRPDNPIIFANNAFLEMTGYESEEIVGQNCRFLQGAETDRSVVAQVREAISKRQEV 99
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
V L+NY+KDG+ FW +S V+ + G +F A Q+ I R+
Sbjct: 100 SVELINYRKDGSTFWNALFISPVY-NDAGELIYFFASQLDISRRR 143
>gi|401782496|dbj|BAM36551.1| phototropin 1 [Fragaria x ananassa]
Length = 1028
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 74/103 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 499 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATV 558
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+E+I + TV+++NY K FWN+ H+ P+R+ G+V
Sbjct: 559 KKIREAIDNQTEVTVQLINYTKSGKKFWNVFHLQPMRDQKGEV 601
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L L +Q+FV+ D PD P++YAS F K+TGY EV+G+NCRFL G DTD
Sbjct: 205 VSEDLKNVLSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTD 264
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ Q++E++ + R+LNY+KD + FWNLL I+PI++ +GKVL
Sbjct: 265 PEDVAQLREALAKNTSYCGRLLNYKKDGTPFWNLLTIAPIKDETGKVL 312
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+ T+ +IR
Sbjct: 503 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVKKIR 562
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
EAI + + V L+NY K G FW +F + + ++ G +F+ VQ+
Sbjct: 563 EAIDNQTEVTVQLINYTKSGKKFWNVFHLQPMRDQK-GEVQYFIGVQL 609
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 68/113 (60%), Gaps = 3/113 (2%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+F ++D + +PI++AS GF KM+G++ E+IGRN R QG T+ + ++REA+ +
Sbjct: 219 TFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDVAQLREALAKN 278
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
LLNYKKDGTPFW L ++ + E G+ F+ +QV + KH S
Sbjct: 279 TSYCGRLLNYKKDGTPFWNLLTIAPI-KDETGKVLKFIGMQVEV--SKHTEGS 328
>gi|222422849|dbj|BAH19411.1| AT3G45780 [Arabidopsis thaliana]
Length = 826
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 74/103 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD T +
Sbjct: 466 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDLTTV 525
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+ +I + TV+++NY K FWN+ H+ P+R+ G+V
Sbjct: 526 KKIRNAIDNQTEVTVQLINYTKSGKKFWNIFHLQPMRDQKGEV 568
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 76/121 (62%), Gaps = 3/121 (2%)
Query: 226 VCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVV 285
V G R +P +S L +L +Q+FV+ D PD P++YAS F +TGY EVV
Sbjct: 174 VPGGRSGIP---RVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVV 230
Query: 286 GQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
G+NCRFL G TD L +I+E++ RILNY+KD +SFWNLL I+PI++ SGKV
Sbjct: 231 GRNCRFLQGSGTDADELAKIRETLAAGNNYCGRILNYKKDGTSFWNLLTIAPIKDESGKV 290
Query: 346 L 346
L
Sbjct: 291 L 291
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+ T+ +IR
Sbjct: 470 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDLTTVKKIR 529
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
AI + + V L+NY K G FW +F + + ++ G +F+ VQ+
Sbjct: 530 NAIDNQTEVTVQLINYTKSGKKFWNIFHLQPMRDQK-GEVQYFIGVQL 576
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 99/203 (48%), Gaps = 20/203 (9%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF M+G++ E++GRN R QG T+ +
Sbjct: 188 LKDALSTFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDADEL 247
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI------ 133
+IRE + +LNYKKDGT FW L ++ + E G+ F+ +QV +
Sbjct: 248 AKIRETLAAGNNYCGRILNYKKDGTSFWNLLTIAPI-KDESGKVLKFIGMQVEVSKHTEG 306
Query: 134 VSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDL----DRVLALDSDDTGLE 189
K +R +G+ S I + + ++++ ++S+ +L R AL
Sbjct: 307 AKEKALRPNGLPES---------LIRYDARQKDMATNSVTELVEAVKRPRALSESTNLHP 357
Query: 190 IEDSCEASDLEKRKAATAIDNIL 212
E+ +L K+ A +N++
Sbjct: 358 FMTKSESDELPKKPARRMSENVV 380
>gi|414870627|tpg|DAA49184.1| TPA: putative phototropin family protein kinase [Zea mays]
Length = 905
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 77/103 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD + +
Sbjct: 379 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDMSTV 438
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+E+I+ ++ TV+++NY K FWNL H+ P+R+ G++
Sbjct: 439 DKIREAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQKGEL 481
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 76/111 (68%)
Query: 236 MGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295
M +S L +L ++Q+FV+ D PD P++YAS F +TGY EV G+NCRFL G
Sbjct: 98 MPRVSQELKDALSSLQQTFVVSDATRPDCPIIYASAGFYTMTGYTPKEVTGRNCRFLQGP 157
Query: 296 DTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
DTD + +I+++++T ++ R+LNYRKD + FWN+L ++PIR+ +GKV+
Sbjct: 158 DTDMNEVAKIRDAVKTGRSFCGRLLNYRKDGTPFWNMLTVTPIRDDNGKVI 208
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T+ T+ +IR
Sbjct: 383 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDMSTVDKIR 442
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
EAIRE++ I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 443 EAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 489
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 7/154 (4%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + +AL L +F ++D + PI++AS GF M+G++ E+ GRN R QGP T
Sbjct: 100 RVSQELKDALSSLQQTFVVSDATRPDCPIIYASAGFYTMTGYTPKEVTGRNCRFLQGPDT 159
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI- 133
+ + +IR+A++ R LLNY+KDGTPFW + ++ + ++G+ F+ +QV +
Sbjct: 160 DMNEVAKIRDAVKTGRSFCGRLLNYRKDGTPFWNMLTVTPI-RDDNGKVIKFIGMQVEVS 218
Query: 134 -----VSRKHMRNSGMSYSEDGGGSRLREIVFGS 162
+S K MR + M S R +E S
Sbjct: 219 KYTEGLSEKRMRPNEMPVSLIHYDDRQKETAMSS 252
>gi|297815732|ref|XP_002875749.1| hypothetical protein ARALYDRAFT_484960 [Arabidopsis lyrata subsp.
lyrata]
gi|297321587|gb|EFH52008.1| hypothetical protein ARALYDRAFT_484960 [Arabidopsis lyrata subsp.
lyrata]
Length = 994
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 74/103 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD T +
Sbjct: 466 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDLTTV 525
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+ +I + TV+++NY K FWN+ H+ P+R+ G+V
Sbjct: 526 KKIRNAIDNQTEVTVQLINYTKSGKKFWNIFHLQPMRDQKGEV 568
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 71/108 (65%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D PD P++YAS F +TGY EVVG+NCRFL G TD
Sbjct: 184 VSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTD 243
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
L +I+E++ R+LNY+KD +SFWNLL I+PI++ SGKVL
Sbjct: 244 ADELAKIRETLAAGNNYCGRLLNYKKDGTSFWNLLTIAPIKDESGKVL 291
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+ T+ +IR
Sbjct: 470 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDLTTVKKIR 529
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
AI + + V L+NY K G FW +F + + ++ G +F+ VQ+
Sbjct: 530 NAIDNQTEVTVQLINYTKSGKKFWNIFHLQPMRDQK-GEVQYFIGVQL 576
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 99/203 (48%), Gaps = 20/203 (9%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF M+G++ E++GRN R QG T+ +
Sbjct: 188 LKDALSTFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDADEL 247
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI------ 133
+IRE + LLNYKKDGT FW L ++ + E G+ F+ +QV +
Sbjct: 248 AKIRETLAAGNNYCGRLLNYKKDGTSFWNLLTIAPI-KDESGKVLKFIGMQVEVSKHTEG 306
Query: 134 VSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDL----DRVLALDSDDTGLE 189
K +R +G+ S I + + ++++ ++S+ +L R AL
Sbjct: 307 AKEKSLRPNGLPES---------LIRYDARQKDIATNSVTELVEAVKRPRALSESTNLHP 357
Query: 190 IEDSCEASDLEKRKAATAIDNIL 212
E+ +L K+ A +N++
Sbjct: 358 FMTKSESDELPKKPARRMSENVV 380
>gi|15231245|ref|NP_190164.1| non-specific serine/threonine protein kinase [Arabidopsis thaliana]
gi|79314333|ref|NP_001030814.1| non-specific serine/threonine protein kinase [Arabidopsis thaliana]
gi|25090817|sp|O48963.1|PHOT1_ARATH RecName: Full=Phototropin-1; AltName: Full=Non-phototropic
hypocotyl protein 1; AltName: Full=Root phototropism
protein 1
gi|13430612|gb|AAK25928.1|AF360218_1 putative nonphototropic hypocotyl 1 protein [Arabidopsis thaliana]
gi|2832241|gb|AAC01753.1| nonphototropic hypocotyl 1 [Arabidopsis thaliana]
gi|7019644|emb|CAB75791.1| nonphototropic hypocotyl 1 [Arabidopsis thaliana]
gi|14532876|gb|AAK64120.1| putative nonphototropic hypocotyl 1 protein [Arabidopsis thaliana]
gi|332644551|gb|AEE78072.1| non-specific serine/threonine protein kinase [Arabidopsis thaliana]
gi|332644552|gb|AEE78073.1| non-specific serine/threonine protein kinase [Arabidopsis thaliana]
Length = 996
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 74/103 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD T +
Sbjct: 466 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDLTTV 525
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+ +I + TV+++NY K FWN+ H+ P+R+ G+V
Sbjct: 526 KKIRNAIDNQTEVTVQLINYTKSGKKFWNIFHLQPMRDQKGEV 568
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 76/121 (62%), Gaps = 3/121 (2%)
Query: 226 VCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVV 285
V G R +P +S L +L +Q+FV+ D PD P++YAS F +TGY EVV
Sbjct: 174 VPGGRSGIPR---VSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVV 230
Query: 286 GQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
G+NCRFL G TD L +I+E++ RILNY+KD +SFWNLL I+PI++ SGKV
Sbjct: 231 GRNCRFLQGSGTDADELAKIRETLAAGNNYCGRILNYKKDGTSFWNLLTIAPIKDESGKV 290
Query: 346 L 346
L
Sbjct: 291 L 291
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+ T+ +IR
Sbjct: 470 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDLTTVKKIR 529
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
AI + + V L+NY K G FW +F + + ++ G +F+ VQ+
Sbjct: 530 NAIDNQTEVTVQLINYTKSGKKFWNIFHLQPMRDQK-GEVQYFIGVQL 576
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 99/203 (48%), Gaps = 20/203 (9%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF M+G++ E++GRN R QG T+ +
Sbjct: 188 LKDALSTFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDADEL 247
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI------ 133
+IRE + +LNYKKDGT FW L ++ + E G+ F+ +QV +
Sbjct: 248 AKIRETLAAGNNYCGRILNYKKDGTSFWNLLTIAPI-KDESGKVLKFIGMQVEVSKHTEG 306
Query: 134 VSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDL----DRVLALDSDDTGLE 189
K +R +G+ S I + + ++++ ++S+ +L R AL
Sbjct: 307 AKEKALRPNGLPES---------LIRYDARQKDMATNSVTELVEAVKRPRALSESTNLHP 357
Query: 190 IEDSCEASDLEKRKAATAIDNIL 212
E+ +L K+ A +N++
Sbjct: 358 FMTKSESDELPKKPARRMSENVV 380
>gi|108863902|gb|ABG22325.1| Nonphototropic hypocotyl protein 1, putative, expressed [Oryza
sativa Japonica Group]
Length = 875
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 74/103 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y+R E++G+NCRFL G +TD +
Sbjct: 404 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATV 463
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I + TV+++NY K FWNL H+ P+R+ G V
Sbjct: 464 RKIRDAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDV 506
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 69/108 (63%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D P+ P++YAS F +TGY EVVG+NCRFL G TD
Sbjct: 123 VSEELRAALSVFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTD 182
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I++S+ RILNY+KD + FWNLL I+PI++ G++L
Sbjct: 183 PHEIDKIRQSLANGSNYCGRILNYKKDGTPFWNLLTIAPIKDEDGRLL 230
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T+R T+ +IR
Sbjct: 408 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATVRKIR 467
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 468 DAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQL 514
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D + HPI++AS GF M+G++ E++GRN R QG T+ I +I
Sbjct: 130 ALSVFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPHEIDKI 189
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R+++ +LNYKKDGTPFW L ++ + EDGR F+ +QV +
Sbjct: 190 RQSLANGSNYCGRILNYKKDGTPFWNLLTIAPI-KDEDGRLLKFIGMQVEV 239
>gi|115486852|ref|NP_001065232.1| Os12g0101800 [Oryza sativa Japonica Group]
gi|122248708|sp|Q2QYY8.2|PHT1A_ORYSJ RecName: Full=Phototropin-1A; AltName: Full=Non-phototropic
hypocotyl protein 1A; Short=OsNPH1a
gi|108862060|gb|ABA95572.2| Nonphototropic hypocotyl protein 1, putative, expressed [Oryza
sativa Japonica Group]
gi|113648420|dbj|BAF28932.1| Os12g0101800 [Oryza sativa Japonica Group]
Length = 921
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 74/103 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y+R E++G+NCRFL G +TD +
Sbjct: 404 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATV 463
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I + TV+++NY K FWNL H+ P+R+ G V
Sbjct: 464 RKIRDAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDV 506
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 69/108 (63%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D P+ P++YAS F +TGY EVVG+NCRFL G TD
Sbjct: 123 VSEELRAALSAFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTD 182
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I++S+ RILNY+KD + FWNLL I+PI++ G++L
Sbjct: 183 PHEIDKIRQSLANGSNYCGRILNYKKDGTPFWNLLTIAPIKDEDGRLL 230
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T+R T+ +IR
Sbjct: 408 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATVRKIR 467
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 468 DAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQL 514
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D + HPI++AS GF M+G++ E++GRN R QG T+ I +I
Sbjct: 130 ALSAFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPHEIDKI 189
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R+++ +LNYKKDGTPFW L ++ + EDGR F+ +QV +
Sbjct: 190 RQSLANGSNYCGRILNYKKDGTPFWNLLTIAPI-KDEDGRLLKFIGMQVEV 239
>gi|108862062|gb|ABG21842.1| Nonphototropic hypocotyl protein 1, putative, expressed [Oryza
sativa Japonica Group]
gi|108862063|gb|ABG21843.1| Nonphototropic hypocotyl protein 1, putative, expressed [Oryza
sativa Japonica Group]
Length = 854
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 74/103 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y+R E++G+NCRFL G +TD +
Sbjct: 404 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATV 463
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I + TV+++NY K FWNL H+ P+R+ G V
Sbjct: 464 RKIRDAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDV 506
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 69/108 (63%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D P+ P++YAS F +TGY EVVG+NCRFL G TD
Sbjct: 123 VSEELRAALSAFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTD 182
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I++S+ RILNY+KD + FWNLL I+PI++ G++L
Sbjct: 183 PHEIDKIRQSLANGSNYCGRILNYKKDGTPFWNLLTIAPIKDEDGRLL 230
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T+R T+ +IR
Sbjct: 408 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATVRKIR 467
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 468 DAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQL 514
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D + HPI++AS GF M+G++ E++GRN R QG T+ I +I
Sbjct: 130 ALSAFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPHEIDKI 189
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R+++ +LNYKKDGTPFW L ++ + EDGR F+ +QV +
Sbjct: 190 RQSLANGSNYCGRILNYKKDGTPFWNLLTIAPI-KDEDGRLLKFIGMQVEV 239
>gi|6006312|dbj|BAA84780.1| nonphototrophic hypocotyl 1a [Oryza sativa Japonica Group]
Length = 921
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 74/103 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y+R E++G+NCRFL G +TD +
Sbjct: 404 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATV 463
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I + TV+++NY K FWNL H+ P+R+ G V
Sbjct: 464 RKIRDAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDV 506
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 69/108 (63%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D P+ P++YAS F +TGY EVVG+NCRFL G TD
Sbjct: 123 VSEELRAALSVFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTD 182
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I++S+ RILNY+KD + FWNLL I+PI++ G++L
Sbjct: 183 PHEIDKIRQSLANGSNYCGRILNYKKDGTPFWNLLTIAPIKDEDGRLL 230
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T+R T+ +IR
Sbjct: 408 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATVRKIR 467
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 468 DAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQL 514
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D + HPI++AS GF M+G++ E++GRN R QG T+ I +I
Sbjct: 130 ALSVFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPHEIDKI 189
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R+++ +LNYKKDGTPFW L ++ + EDGR F+ +QV +
Sbjct: 190 RQSLANGSNYCGRILNYKKDGTPFWNLLTIAPI-KDEDGRLLKFIGMQVEV 239
>gi|115483707|ref|NP_001065225.1| Os11g0102200 [Oryza sativa Japonica Group]
gi|122248863|sp|Q2RBR1.2|PHT1B_ORYSJ RecName: Full=Phototropin-1B
gi|108863901|gb|ABA91098.2| Nonphototropic hypocotyl protein 1, putative, expressed [Oryza
sativa Japonica Group]
gi|113644219|dbj|BAF27360.1| Os11g0102200 [Oryza sativa Japonica Group]
Length = 921
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 74/103 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y+R E++G+NCRFL G +TD +
Sbjct: 404 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATV 463
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I + TV+++NY K FWNL H+ P+R+ G V
Sbjct: 464 RKIRDAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDV 506
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 69/108 (63%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D P+ P++YAS F +TGY EVVG+NCRFL G TD
Sbjct: 123 VSEELRAALSVFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTD 182
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I++S+ RILNY+KD + FWNLL I+PI++ G++L
Sbjct: 183 PHEIDKIRQSLANGSNYCGRILNYKKDGTPFWNLLTIAPIKDEDGRLL 230
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T+R T+ +IR
Sbjct: 408 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATVRKIR 467
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 468 DAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQL 514
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D + HPI++AS GF M+G++ E++GRN R QG T+ I +I
Sbjct: 130 ALSVFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPHEIDKI 189
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R+++ +LNYKKDGTPFW L ++ + EDGR F+ +QV +
Sbjct: 190 RQSLANGSNYCGRILNYKKDGTPFWNLLTIAPI-KDEDGRLLKFIGMQVEV 239
>gi|218186235|gb|EEC68662.1| hypothetical protein OsI_37109 [Oryza sativa Indica Group]
Length = 921
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 74/103 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y+R E++G+NCRFL G +TD +
Sbjct: 404 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATV 463
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I + TV+++NY K FWNL H+ P+R+ G V
Sbjct: 464 RKIRDAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDV 506
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 69/108 (63%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D P+ P++YAS F +TGY EVVG+NCRFL G TD
Sbjct: 123 VSEELRAALSVFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTD 182
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I++S+ RILNY+KD + FWNLL I+PI++ G++L
Sbjct: 183 PHEIDKIRQSLANGSNYCGRILNYKKDGTPFWNLLTIAPIKDEDGRLL 230
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T+R T+ +IR
Sbjct: 408 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATVRKIR 467
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 468 DAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQL 514
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D + HPI++AS GF M+G++ E++GRN R QG T+ I +I
Sbjct: 130 ALSVFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPHEIDKI 189
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R+++ +LNYKKDGTPFW L ++ + EDGR F+ +QV +
Sbjct: 190 RQSLANGSNYCGRILNYKKDGTPFWNLLTIAPI-KDEDGRLLKFIGMQVEV 239
>gi|125575911|gb|EAZ17133.1| hypothetical protein OsJ_32634 [Oryza sativa Japonica Group]
Length = 853
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 74/103 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y+R E++G+NCRFL G +TD +
Sbjct: 404 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATV 463
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I + TV+++NY K FWNL H+ P+R+ G V
Sbjct: 464 RKIRDAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDV 506
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 69/108 (63%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D P+ P++YAS F +TGY EVVG+NCRFL G TD
Sbjct: 123 VSEELRAALSVFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTD 182
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I++S+ RILNY+KD + FWNLL I+PI++ G++L
Sbjct: 183 PHEIDKIRQSLANGSNYCGRILNYKKDGTPFWNLLTIAPIKDEDGRLL 230
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T+R T+ +IR
Sbjct: 408 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATVRKIR 467
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 468 DAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQL 514
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D + HPI++AS GF M+G++ E++GRN R QG T+ I +I
Sbjct: 130 ALSVFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPHEIDKI 189
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R+++ +LNYKKDGTPFW L ++ + EDGR F+ +QV +
Sbjct: 190 RQSLANGSNYCGRILNYKKDGTPFWNLLTIAPI-KDEDGRLLKFIGMQVEV 239
>gi|449475890|ref|XP_004154580.1| PREDICTED: phototropin-2-like [Cucumis sativus]
Length = 629
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 77/103 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 389 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQETV 448
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I+ ++ TV+++NY K FWNL H+ P+R+ +G++
Sbjct: 449 SKIRDAIREQREITVQLINYTKTGKKFWNLFHLQPMRDETGEL 491
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ +IR
Sbjct: 393 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQETVSKIR 452
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AIRE+R I V L+NY K G FW LF + + E G +F+ VQ+
Sbjct: 453 DAIREQREITVQLINYTKTGKKFWNLFHLQPMR-DETGELQYFIGVQL 499
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 72/108 (66%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L ++Q+FV+ D PD P+VYAS F +TGY EV+G+NCRFL G +TD
Sbjct: 113 VSQELKDALASLEQTFVVSDATKPDCPIVYASSGFFGMTGYASEEVIGRNCRFLQGSETD 172
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+ +++ ++ R+LNY+K+ + FWNLL ++PI++ +G +
Sbjct: 173 QKEVDKIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGNTI 220
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 81/139 (58%), Gaps = 7/139 (5%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + +AL L +F ++D + PIV+AS GF M+G++ E+IGRN R QG T
Sbjct: 112 RVSQELKDALASLEQTFVVSDATKPDCPIVYASSGFFGMTGYASEEVIGRNCRFLQGSET 171
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI- 133
+++ + +IR A++ + LLNYKK+GTPFW L ++ + ++G F+ +QV +
Sbjct: 172 DQKEVDKIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPI-KDDNGNTIKFIGMQVEVS 230
Query: 134 -----VSRKHMRNSGMSYS 147
++ K +R +G+ S
Sbjct: 231 KYTEGINDKALRPNGLPKS 249
>gi|350535803|ref|NP_001234214.1| phototropin-1 [Solanum lycopersicum]
gi|151176133|gb|ABN42185.2| phototropin-1 [Solanum lycopersicum]
Length = 1018
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 74/103 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 489 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATV 548
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I + TV+++NY K FWNL H+ P+R+ G+V
Sbjct: 549 KKIRQAIDNQTDVTVQLINYTKTGKKFWNLFHLQPMRDQKGEV 591
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 74/112 (66%)
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G+ +S L +L +Q+FV+ D PD P++YAS F K+TGY EV+G+NCRF+ G
Sbjct: 186 GIPRVSEDLRDALSTFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFMQG 245
Query: 295 VDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
TD + I+E++Q+ R+LNY+KD + FWNLL I+PI++ +GKVL
Sbjct: 246 SGTDPEDVATIREALQSGSTYCGRLLNYKKDGTPFWNLLTIAPIKDDAGKVL 297
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+ T+ +IR
Sbjct: 493 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVKKIR 552
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 553 QAIDNQTDVTVQLINYTKTGKKFWNLFHLQPMRDQK-GEVQYFIGVQL 599
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 88/159 (55%), Gaps = 10/159 (6%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF KM+G++ E+IGRN R QG T+ +
Sbjct: 194 LRDALSTFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFMQGSGTDPEDV 253
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIVSRKH 138
IREA++ LLNYKKDGTPFW L ++ + K+D G+ F+ +QV + KH
Sbjct: 254 ATIREALQSGSTYCGRLLNYKKDGTPFWNLLTIAPI--KDDAGKVLKFIGMQVEV--SKH 309
Query: 139 MRNSGMSYSEDGGGSRLRE--IVFGSCRREVCSDSLLDL 175
S G L E I + ++E+ S+S+ +L
Sbjct: 310 TEGSKEKTVRPNG---LPESLIRYDVRQKEMASNSVNEL 345
>gi|228481103|gb|ACQ42250.1| blue light photoreceptor [Fragaria x ananassa]
Length = 642
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 74/103 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 113 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATV 172
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+E+I + TV+++NY K FWN+ H+ P+R+ G+V
Sbjct: 173 KKIREAIDNQTEVTVQLINYTKSGKKFWNVFHLQPMRDHKGEV 215
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 68/109 (62%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+ T+ +I
Sbjct: 116 TLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVKKI 175
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
REAI + + V L+NY K G FW +F + + + G +F+ VQ+
Sbjct: 176 REAIDNQTEVTVQLINYTKSGKKFWNVFHLQPMRDHK-GEVQYFIGVQL 223
>gi|357454021|ref|XP_003597291.1| Phototropin [Medicago truncatula]
gi|355486339|gb|AES67542.1| Phototropin [Medicago truncatula]
Length = 1053
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 74/103 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 431 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATV 490
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+E+I + TV+++NY + FWNL H+ P+R+ G+V
Sbjct: 491 RKIREAIDNQTEVTVQLINYTRTGKKFWNLFHLQPMRDHKGEV 533
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 73/112 (65%)
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G +S L +L +Q+FV+ D PD P++YAS F +TGY EV+G+NCRFL G
Sbjct: 140 GFPRVSEDLKDALSAFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVIGRNCRFLQG 199
Query: 295 VDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
DTD + +I+E+++ ++ R+LNY+KD + FWNLL ISPI++ G VL
Sbjct: 200 ADTDPQDVAKIREALEGGKSYCGRLLNYKKDGTPFWNLLTISPIKDDDGNVL 251
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+ T+ +IR
Sbjct: 435 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIR 494
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
EAI + + V L+NY + G FW LF + + + G +F+ VQ+
Sbjct: 495 EAIDNQTEVTVQLINYTRTGKKFWNLFHLQPMRDHK-GEVQYFIGVQL 541
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 75/134 (55%), Gaps = 7/134 (5%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF M+G++ E+IGRN R QG T+ + +
Sbjct: 148 LKDALSAFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVIGRNCRFLQGADTDPQDV 207
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI------ 133
+IREA+ + LLNYKKDGTPFW L +S + +DG + + V +
Sbjct: 208 AKIREALEGGKSYCGRLLNYKKDGTPFWNLLTISPI-KDDDGNVLKLIGMLVEVNKHTEG 266
Query: 134 VSRKHMRNSGMSYS 147
K++R +G+ S
Sbjct: 267 SKEKNLRPNGLPES 280
>gi|149286420|gb|ABR23225.1| hisactophilin C49S mutant/phototropin PHY3 fusion protein
[Expression vector pNCO-HISACT-(C49S)-ASLOV2-syn]
Length = 288
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 74/106 (69%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD
Sbjct: 130 SEFLATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDR 189
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +I+++I + TV+++NY K FWNL H+ P+R+ G V
Sbjct: 190 ATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDV 235
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+R T+ +IR
Sbjct: 137 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIR 196
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+ +H+R++
Sbjct: 197 DAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQLD--GTEHVRDAA 253
>gi|224132474|ref|XP_002328288.1| predicted protein [Populus trichocarpa]
gi|222837803|gb|EEE76168.1| predicted protein [Populus trichocarpa]
Length = 495
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 76/103 (73%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 339 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATV 398
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+++++I+ ++ TV+++NY K FWNL H+ P+R+ G++
Sbjct: 399 SKVRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQKGEL 441
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ ++R
Sbjct: 343 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVSKVR 402
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AIRE+R I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 403 DAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 449
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 70/108 (64%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L ++Q+FV+ D PD P+++AS F +TGY EV+G+NCRFL G TD
Sbjct: 65 VSQELKNALATLQQTFVVSDATKPDYPIMFASSGFFTMTGYSSKEVIGRNCRFLQGAGTD 124
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+++++ + R+LNY+K+ + FWNLL ++PI++ G +
Sbjct: 125 QNEVAKIRDAVKNGTSYCGRLLNYKKNGTPFWNLLTVTPIKDDRGNTI 172
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 81/140 (57%), Gaps = 9/140 (6%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + AL L +F ++D + +PI+FAS GF M+G+S E+IGRN R QG T
Sbjct: 64 RVSQELKNALATLQQTFVVSDATKPDYPIMFASSGFFTMTGYSSKEVIGRNCRFLQGAGT 123
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
++ + +IR+A++ LLNYKK+GTPFW L ++ + K+D G F+ +QV +
Sbjct: 124 DQNEVAKIRDAVKNGTSYCGRLLNYKKNGTPFWNLLTVTPI--KDDRGNTIKFIGMQVEV 181
Query: 134 ------VSRKHMRNSGMSYS 147
V+ K +R +G+ S
Sbjct: 182 SKYTEGVNDKALRPNGLPKS 201
>gi|2754823|gb|AAC05083.1| NPH1-1 [Avena sativa]
Length = 923
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 73/103 (70%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 404 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATV 463
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I + TV+++NY K FWNL H+ P+R+ G V
Sbjct: 464 RKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDV 506
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 69/108 (63%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D P P++YAS F +TGY EVVG+NCRFL G TD
Sbjct: 123 VSEELRAALSAFQQTFVVSDASRPGHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTD 182
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I++++ R+LNY+KD ++FWNLL I+PI++ G+VL
Sbjct: 183 PAEIAKIRQALANGSNYCGRVLNYKKDGTAFWNLLTIAPIKDEEGRVL 230
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+R T+ +IR
Sbjct: 408 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIR 467
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ + +H+R++
Sbjct: 468 DAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQ--LDGTEHVRDAA 524
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 69/119 (57%), Gaps = 1/119 (0%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + AL +F ++D S GHPI++AS GF M+G++ E++GRN R QG T
Sbjct: 122 RVSEELRAALSAFQQTFVVSDASRPGHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGT 181
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+ I +IR+A+ +LNYKKDGT FW L ++ + E+GR F+ +QV +
Sbjct: 182 DPAEIAKIRQALANGSNYCGRVLNYKKDGTAFWNLLTIAPI-KDEEGRVLKFIGMQVEV 239
>gi|162330140|pdb|2V0U|A Chain A, N- And C-terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-induced Signal Transduction (cryo Dark
Structure Of Lov2 (404-546))
gi|162330141|pdb|2V0W|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Cryo-
Trapped Light Structure Of Lov2 (404-546))
Length = 146
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 73/103 (70%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 4 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATV 63
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I + TV+++NY K FWNL H+ P+R+ G V
Sbjct: 64 RKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDV 106
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 76/121 (62%), Gaps = 3/121 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+R T+ +I
Sbjct: 7 TLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKI 66
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+ +H+R++
Sbjct: 67 RDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQLD--GTEHVRDA 123
Query: 143 G 143
Sbjct: 124 A 124
>gi|2754825|gb|AAC05084.1| NPH1-2 [Avena sativa]
Length = 927
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 73/103 (70%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 407 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATV 466
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I + TV+++NY K FWNL H+ P+R+ G V
Sbjct: 467 RKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDV 509
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 69/108 (63%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D P P++YAS F +TGY EVVG+NCRFL G TD
Sbjct: 126 VSEELRAALSAFQQTFVVSDASRPGHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTD 185
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I++++ R+LNY+KD ++FWNLL I+PI++ G+VL
Sbjct: 186 PAEIAKIRQALADGSNYCGRVLNYKKDGTAFWNLLTIAPIKDEEGRVL 233
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+R T+ +IR
Sbjct: 411 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIR 470
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ + +H+R++
Sbjct: 471 DAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQ--LDGTEHVRDAA 527
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D S GHPI++AS GF M+G++ E++GRN R QG T+ I +I
Sbjct: 133 ALSAFQQTFVVSDASRPGHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPAEIAKI 192
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R+A+ + +LNYKKDGT FW L ++ + E+GR F+ +QV +
Sbjct: 193 RQALADGSNYCGRVLNYKKDGTAFWNLLTIAPI-KDEEGRVLKFIGMQVEV 242
>gi|162330142|pdb|2V1A|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Room
Temperature (293k) Dark Structure Of Lov2 (404-546))
gi|162330143|pdb|2V1B|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Room
Temperature (293k) Light Structure Of Lov2 (404-546))
Length = 144
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 73/103 (70%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 2 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATV 61
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I + TV+++NY K FWNL H+ P+R+ G V
Sbjct: 62 RKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDV 104
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 76/121 (62%), Gaps = 3/121 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+R T+ +I
Sbjct: 5 TLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKI 64
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+ +H+R++
Sbjct: 65 RDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQLD--GTEHVRDA 121
Query: 143 G 143
Sbjct: 122 A 122
>gi|108862061|gb|ABG21841.1| Nonphototropic hypocotyl protein 1, putative, expressed [Oryza
sativa Japonica Group]
gi|215694946|dbj|BAG90137.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 616
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 74/103 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y+R E++G+NCRFL G +TD +
Sbjct: 99 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATV 158
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I + TV+++NY K FWNL H+ P+R+ G V
Sbjct: 159 RKIRDAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDV 201
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T+R T+ +IR
Sbjct: 103 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYNREEILGRNCRFLQGPETDRATVRKIR 162
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 163 DAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQL 209
>gi|296283304|ref|ZP_06861302.1| hypothetical protein CbatJ_06766 [Citromicrobium bathyomarinum
JL354]
Length = 335
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 72/101 (71%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
++ + + + L DP+LPD P+V+A+ AF +LTGYD +E++G+NCRFL G TD + ++
Sbjct: 21 AMAQTRMAVCLSDPNLPDQPIVFANRAFRRLTGYDEDEILGRNCRFLQGPKTDRAEVARV 80
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+E+I+ E V +LNYRKD + FWN LH+ PI +A GK+L
Sbjct: 81 REAIENEDVVVVELLNYRKDGTEFWNALHLGPIYDAQGKLL 121
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
E F++ + +A+ + + ++DP++ PIVFA+R F +++G+ EI+GRN R
Sbjct: 7 EDRFSDTSGVLFEQAMAQTRMAVCLSDPNLPDQPIVFANRAFRRLTGYDEDEILGRNCRF 66
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QGP+T+R + +REAI E + V LLNY+KDGT FW + ++ + G+ +F
Sbjct: 67 LQGPKTDRAEVARVREAIENEDVVVVELLNYRKDGTEFWNALHLGPIYDAQ-GKLLYFFG 125
Query: 129 VQ 130
Q
Sbjct: 126 SQ 127
>gi|326508020|dbj|BAJ86753.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 919
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 73/103 (70%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 400 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATV 459
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I + TV+++NY K FWNL H+ P+R+ G V
Sbjct: 460 RKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDV 502
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 71/112 (63%)
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G+ +S L +L +Q+FV+ D P P++YAS F +TGY EVVG+NCRFL G
Sbjct: 115 GIPRVSEELRAALSAFQQTFVVSDASRPGHPIMYASAGFFNMTGYTSKEVVGRNCRFLQG 174
Query: 295 VDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
TD + +I++++ R+LNY+KD ++FWNLL I+PI++ G+VL
Sbjct: 175 SGTDPAEIAKIRQALADGSNYCGRVLNYKKDGTAFWNLLTIAPIKDEDGRVL 226
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+R T+ +IR
Sbjct: 404 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIR 463
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ + +H+R++
Sbjct: 464 DAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQ--LDGTEHVRDAA 520
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D S GHPI++AS GF M+G++ E++GRN R QG T+ I +I
Sbjct: 126 ALSAFQQTFVVSDASRPGHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPAEIAKI 185
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R+A+ + +LNYKKDGT FW L ++ + EDGR F+ +QV +
Sbjct: 186 RQALADGSNYCGRVLNYKKDGTAFWNLLTIAPI-KDEDGRVLKFIGMQVEV 235
>gi|457711|emb|CAA82993.1| protein kinase [Spinacia oleracea]
Length = 724
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 77/103 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD T +
Sbjct: 194 LATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQTTV 253
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I+ ++ TV+++NY K FWNL H+ P+R+ G++
Sbjct: 254 QKIRDAIKEQRDITVQLINYTKSGRKFWNLFHLQPMRDQKGEL 296
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F I+DP + +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ +IR
Sbjct: 198 LERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQTTVQKIR 257
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI+E+R I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 258 DAIKEQRDITVQLINYTKSGRKFWNLFHLQPMRDQK-GELQYFIGVQL 304
>gi|256032284|pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 74/104 (71%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
SL +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD
Sbjct: 12 SLATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRAT 71
Query: 302 LYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +I+++I + TV+++NY K FWNL H+ P+R+ G V
Sbjct: 72 VRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDV 115
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+R T+ +IR
Sbjct: 17 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIR 76
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+ +H+R++
Sbjct: 77 DAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQLD--GTEHVRDAA 133
>gi|449444602|ref|XP_004140063.1| PREDICTED: phototropin-2-like [Cucumis sativus]
Length = 921
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 77/103 (74%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 389 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQETV 448
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I+ ++ TV+++NY K FWNL H+ P+R+ +G++
Sbjct: 449 SKIRDAIREQREITVQLINYTKTGKKFWNLFHLQPMRDETGEL 491
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 72/109 (66%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ +I
Sbjct: 392 TLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQETVSKI 451
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R+AIRE+R I V L+NY K G FW LF + + E G +F+ VQ+
Sbjct: 452 RDAIREQREITVQLINYTKTGKKFWNLFHLQPM-RDETGELQYFIGVQL 499
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 72/108 (66%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L ++Q+FV+ D PD P+VYAS F +TGY EV+G+NCRFL G +TD
Sbjct: 113 VSQELKDALASLEQTFVVSDATKPDCPIVYASSGFFGMTGYASEEVIGRNCRFLQGSETD 172
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+ +++ ++ R+LNY+K+ + FWNLL ++PI++ +G +
Sbjct: 173 QKEVDKIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGNTI 220
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 81/139 (58%), Gaps = 7/139 (5%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + +AL L +F ++D + PIV+AS GF M+G++ E+IGRN R QG T
Sbjct: 112 RVSQELKDALASLEQTFVVSDATKPDCPIVYASSGFFGMTGYASEEVIGRNCRFLQGSET 171
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI- 133
+++ + +IR A++ + LLNYKK+GTPFW L ++ + ++G F+ +QV +
Sbjct: 172 DQKEVDKIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPI-KDDNGNTIKFIGMQVEVS 230
Query: 134 -----VSRKHMRNSGMSYS 147
++ K +R +G+ S
Sbjct: 231 KYTEGINDKALRPNGLPKS 249
>gi|225428366|ref|XP_002280118.1| PREDICTED: phototropin-2 [Vitis vinifera]
Length = 1001
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 76/103 (73%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 472 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQGTV 531
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I+ ++ TV+++NY K FWNL H+ P+R+ G++
Sbjct: 532 SKIRDAIRQQREITVQLINYTKSGKKFWNLFHLQPMRDQKGEL 574
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 72/108 (66%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L ++Q+FV+ D PD P+++AS F +TGY EV+G+NCRFL G DTD
Sbjct: 185 VSQELKDALSTLQQTFVVSDATKPDCPIMFASSGFFSMTGYTSKEVIGRNCRFLQGPDTD 244
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+ S++T + R+LNY+KD + FWNLL I+PI++ G V+
Sbjct: 245 ENEVAKIRNSVKTGNSYCGRLLNYKKDGTPFWNLLTITPIKDDKGNVI 292
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ +IR
Sbjct: 476 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQGTVSKIR 535
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AIR++R I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 536 DAIRQQREITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 582
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 86/155 (55%), Gaps = 9/155 (5%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + +AL L +F ++D + PI+FAS GF M+G++ E+IGRN R QGP T
Sbjct: 184 RVSQELKDALSTLQQTFVVSDATKPDCPIMFASSGFFSMTGYTSKEVIGRNCRFLQGPDT 243
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
+ + +IR +++ LLNYKKDGTPFW L ++ + K+D G F+ +QV +
Sbjct: 244 DENEVAKIRNSVKTGNSYCGRLLNYKKDGTPFWNLLTITPI--KDDKGNVIKFIGMQVEV 301
Query: 134 ------VSRKHMRNSGMSYSEDGGGSRLREIVFGS 162
V+ K +R +G+ S +R +E GS
Sbjct: 302 SKYTEGVNEKAVRPNGLPQSLIRYDARQKEKALGS 336
>gi|255546656|ref|XP_002514387.1| serine/threonine protein kinase, putative [Ricinus communis]
gi|223546484|gb|EEF47983.1| serine/threonine protein kinase, putative [Ricinus communis]
Length = 984
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 76/103 (73%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 451 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDLATV 510
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I+ ++ TV+++NY K FWNL H+ P+R+ G++
Sbjct: 511 SKIRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQKGEL 553
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 73/108 (67%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L ++Q+FV+ D PD P++YAS F +TGY EV+G+NCRFL G +TD
Sbjct: 175 VSQELKDALSSLQQTFVVSDATKPDCPIMYASSGFFTMTGYSSKEVIGRNCRFLQGPETD 234
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I++++++ Q+ R+LNY+KD + FWNLL ++PI++ G +
Sbjct: 235 EKEVEKIRDAVKSGQSYCGRLLNYKKDGTPFWNLLTVTPIKDDRGNTI 282
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T+ T+ +IR
Sbjct: 455 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDLATVSKIR 514
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AIRE+R I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 515 DAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 561
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 83/140 (59%), Gaps = 9/140 (6%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + +AL L +F ++D + PI++AS GF M+G+S E+IGRN R QGP T
Sbjct: 174 RVSQELKDALSSLQQTFVVSDATKPDCPIMYASSGFFTMTGYSSKEVIGRNCRFLQGPET 233
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
+ + + +IR+A++ + LLNYKKDGTPFW L ++ + K+D G F+ +QV +
Sbjct: 234 DEKEVEKIRDAVKSGQSYCGRLLNYKKDGTPFWNLLTVTPI--KDDRGNTIKFIGMQVEV 291
Query: 134 ------VSRKHMRNSGMSYS 147
++ K +R +G+ S
Sbjct: 292 SKYTEGINEKALRPNGLPKS 311
>gi|297744446|emb|CBI37708.3| unnamed protein product [Vitis vinifera]
Length = 979
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 76/103 (73%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 450 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQGTV 509
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I+ ++ TV+++NY K FWNL H+ P+R+ G++
Sbjct: 510 SKIRDAIRQQREITVQLINYTKSGKKFWNLFHLQPMRDQKGEL 552
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 72/108 (66%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L ++Q+FV+ D PD P+++AS F +TGY EV+G+NCRFL G DTD
Sbjct: 163 VSQELKDALSTLQQTFVVSDATKPDCPIMFASSGFFSMTGYTSKEVIGRNCRFLQGPDTD 222
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+ S++T + R+LNY+KD + FWNLL I+PI++ G V+
Sbjct: 223 ENEVAKIRNSVKTGNSYCGRLLNYKKDGTPFWNLLTITPIKDDKGNVI 270
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ +IR
Sbjct: 454 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQGTVSKIR 513
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AIR++R I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 514 DAIRQQREITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 560
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 86/155 (55%), Gaps = 9/155 (5%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + +AL L +F ++D + PI+FAS GF M+G++ E+IGRN R QGP T
Sbjct: 162 RVSQELKDALSTLQQTFVVSDATKPDCPIMFASSGFFSMTGYTSKEVIGRNCRFLQGPDT 221
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
+ + +IR +++ LLNYKKDGTPFW L ++ + K+D G F+ +QV +
Sbjct: 222 DENEVAKIRNSVKTGNSYCGRLLNYKKDGTPFWNLLTITPI--KDDKGNVIKFIGMQVEV 279
Query: 134 ------VSRKHMRNSGMSYSEDGGGSRLREIVFGS 162
V+ K +R +G+ S +R +E GS
Sbjct: 280 SKYTEGVNEKAVRPNGLPQSLIRYDARQKEKALGS 314
>gi|24899168|dbj|BAC23098.1| phototropin [Vicia faba]
Length = 963
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 73/103 (70%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 437 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATV 496
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+ +I + TV+++NY K FWNL H+ P+R+ G+V
Sbjct: 497 KKIRYAIDNQTEVTVQLINYTKTGKKFWNLFHLQPMRDQKGEV 539
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 74/112 (66%)
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G+ +S L +L +Q+FV+ D PD P++YAS F +TGY EV+G+NCRF+ G
Sbjct: 144 GIPRVSEDLRDALSAFQQTFVVSDATKPDYPIMYASAGFFSMTGYTSKEVIGRNCRFMQG 203
Query: 295 VDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
DTD + +I+E++ + R+LNY+KD ++FWNLL I+PI++ GK+L
Sbjct: 204 ADTDPNDVAKIREALAAGTSYCGRLLNYKKDGTTFWNLLTIAPIKDEHGKIL 255
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
Query: 8 IEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGR 67
I Q R + L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R
Sbjct: 425 IAQKREKRKGFDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCR 484
Query: 68 MFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
QGP T+ T+ +IR AI + + V L+NY K G FW LF + + ++ G +F+
Sbjct: 485 FLQGPETDPATVKKIRYAIDNQTEVTVQLINYTKTGKKFWNLFHLQPMRDQK-GEVQYFI 543
Query: 128 AVQV 131
VQ+
Sbjct: 544 GVQL 547
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 7/134 (5%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF M+G++ E+IGRN R QG T+ +
Sbjct: 152 LRDALSAFQQTFVVSDATKPDYPIMYASAGFFSMTGYTSKEVIGRNCRFMQGADTDPNDV 211
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI------ 133
+IREA+ LLNYKKDGT FW L ++ + E G+ + +QV +
Sbjct: 212 AKIREALAAGTSYCGRLLNYKKDGTTFWNLLTIAPI-KDEHGKILKLIGMQVEVSKHTEG 270
Query: 134 VSRKHMRNSGMSYS 147
K +R +G+ S
Sbjct: 271 TKEKMLRPNGLPES 284
>gi|33357429|pdb|1N9L|A Chain A, Crystal Structure Of The Phot-lov1 Domain From
Chlamydomonas Reinhardtii In The Dark State.
gi|33357432|pdb|1N9N|A Chain A, Crystal Structure Of The Phot-Lov1 Domain From
Chlamydomonas Reinhardtii In Illuminated State. Data Set
Of A Single Crystal.
gi|33357433|pdb|1N9O|A Chain A, Crystal Structure Of The Phot-Lov1 Domain From
Chlamydomonas Reinhardtii In Illuminated State.
Composite Data Set
Length = 109
Score = 114 bits (286), Expect = 5e-23, Method: Composition-based stats.
Identities = 47/96 (48%), Positives = 70/96 (72%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
++ +FV+ D LPD P+VYAS+ F +TGY +EV+G NCRFL G TD + +I+++I
Sbjct: 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAI 61
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +AC+VR+LNYRKD + FWNLL ++PI+ G+V
Sbjct: 62 KKGEACSVRLLNYRKDGTPFWNLLTVTPIKTPDGRV 97
Score = 95.9 bits (237), Expect = 3e-17, Method: Composition-based stats.
Identities = 44/109 (40%), Positives = 67/109 (61%), Gaps = 1/109 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L +F + D ++ P+V+AS GF M+G+ E++G N R QG T+ + + +IR+AI
Sbjct: 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAI 61
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
++ V LLNY+KDGTPFW L ++ + DGR + FV VQV + S
Sbjct: 62 KKGEACSVRLLNYRKDGTPFWNLLTVTPI-KTPDGRVSKFVGVQVDVTS 109
>gi|357167375|ref|XP_003581132.1| PREDICTED: phototropin-2-like [Brachypodium distachyon]
Length = 909
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 76/103 (73%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD T +
Sbjct: 384 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGAETDQTTV 443
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I+ ++ TV+++NY K FWNL H+ P+ + G++
Sbjct: 444 DKIRDAIREQKEVTVQLINYTKSGKKFWNLFHLQPMWDQKGEL 486
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 77/117 (65%)
Query: 230 RCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNC 289
R S + +S L +L ++Q+FV+ D PD P++YAS F +TGY E++G+NC
Sbjct: 94 RASYDSLPRVSQELKDALSNLQQTFVVSDATRPDCPIIYASAGFYTMTGYSAKEIIGRNC 153
Query: 290 RFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
RFL G +TD + +I+++++ ++ R+LNYRKD + FWNLL ++PIR+ GKV+
Sbjct: 154 RFLQGAETDQKEVSKIRDAVKAGKSFCGRLLNYRKDGTPFWNLLTVTPIRDDQGKVI 210
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QG T++ T+ +IR
Sbjct: 388 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGAETDQTTVDKIR 447
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AIRE++ + V L+NY K G FW LF + ++ ++ G +F+ VQ+
Sbjct: 448 DAIREQKEVTVQLINYTKSGKKFWNLFHLQPMWDQK-GELQYFIGVQL 494
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 81/139 (58%), Gaps = 7/139 (5%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + +AL L +F ++D + PI++AS GF M+G+S EIIGRN R QG T
Sbjct: 102 RVSQELKDALSNLQQTFVVSDATRPDCPIIYASAGFYTMTGYSAKEIIGRNCRFLQGAET 161
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI- 133
+++ + +IR+A++ + LLNY+KDGTPFW L ++ + + G+ F+ +QV +
Sbjct: 162 DQKEVSKIRDAVKAGKSFCGRLLNYRKDGTPFWNLLTVTPIR-DDQGKVIKFIGMQVEVS 220
Query: 134 -----VSRKHMRNSGMSYS 147
+S K MR + M S
Sbjct: 221 KYTEGLSDKCMRPNEMPVS 239
>gi|222628578|gb|EEE60710.1| hypothetical protein OsJ_14207 [Oryza sativa Japonica Group]
Length = 888
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 76/103 (73%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP +PD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 360 LATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQGTV 419
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+E+I+ ++ TV+++NY K FWNL H+ P+R+ G++
Sbjct: 420 DKIREAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQKGEL 462
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 79/117 (67%)
Query: 230 RCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNC 289
R S + +S L +L ++Q+FV+ D PD P++YAS+ F +TGY EVVG+NC
Sbjct: 80 RASHDSLPRVSQELKDALSSLQQTFVVSDATRPDCPIIYASEGFFTMTGYSPREVVGRNC 139
Query: 290 RFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
RFL G DTD + +I+++++ ++ R+LNYRKD + FWNLL ++PIR+ +GKV+
Sbjct: 140 RFLQGPDTDAAEVAKIRDAVKHGRSFCGRLLNYRKDGAPFWNLLTVTPIRDDNGKVI 196
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP I +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ +IR
Sbjct: 364 LERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQGTVDKIR 423
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
EAIRE++ I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 424 EAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 470
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 84/153 (54%), Gaps = 7/153 (4%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAE 60
+D +G R + + +AL L +F ++D + PI++AS GF M+G+S E
Sbjct: 74 VDGGVGRASHDSLPRVSQELKDALSSLQQTFVVSDATRPDCPIIYASEGFFTMTGYSPRE 133
Query: 61 IIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED 120
++GRN R QGP T+ + +IR+A++ R LLNY+KDG PFW L ++ + ++
Sbjct: 134 VVGRNCRFLQGPDTDAAEVAKIRDAVKHGRSFCGRLLNYRKDGAPFWNLLTVTPI-RDDN 192
Query: 121 GRATHFVAVQVPI------VSRKHMRNSGMSYS 147
G+ F+ +QV + +S K MR + + S
Sbjct: 193 GKVIKFIGMQVEVSKYTEGLSDKRMRPNELPVS 225
>gi|75337608|sp|Q9ST27.1|PHOT2_ORYSJ RecName: Full=Phototropin-2; AltName: Full=Non-phototropic
hypocotyl protein 1B; Short=OsNPH1B
gi|6006310|dbj|BAA84779.1| nonphototrophic hypocotyl 1b [Oryza sativa Japonica Group]
gi|38344593|emb|CAD40495.2| OSJNBa0079M09.13 [Oryza sativa Japonica Group]
gi|116308943|emb|CAH66070.1| OSIGBa0092O07.5 [Oryza sativa Indica Group]
Length = 907
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 76/103 (73%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP +PD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 379 LATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQGTV 438
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+E+I+ ++ TV+++NY K FWNL H+ P+R+ G++
Sbjct: 439 DKIREAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQKGEL 481
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 79/117 (67%)
Query: 230 RCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNC 289
R S + +S L +L ++Q+FV+ D PD P++YAS+ F +TGY EVVG+NC
Sbjct: 80 RASHDSLPRVSQELKDALSSLQQTFVVSDATRPDCPIIYASEGFFTMTGYSPREVVGRNC 139
Query: 290 RFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
RFL G DTD + +I+++++ ++ R+LNYRKD + FWNLL ++PIR+ +GKV+
Sbjct: 140 RFLQGPDTDAAEVAKIRDAVKHGRSFCGRLLNYRKDGAPFWNLLTVTPIRDDNGKVI 196
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP I +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ +IR
Sbjct: 383 LERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQGTVDKIR 442
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
EAIRE++ I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 443 EAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 489
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 84/153 (54%), Gaps = 7/153 (4%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAE 60
+D +G R + + +AL L +F ++D + PI++AS GF M+G+S E
Sbjct: 74 VDGGVGRASHDSLPRVSQELKDALSSLQQTFVVSDATRPDCPIIYASEGFFTMTGYSPRE 133
Query: 61 IIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED 120
++GRN R QGP T+ + +IR+A++ R LLNY+KDG PFW L ++ + ++
Sbjct: 134 VVGRNCRFLQGPDTDAAEVAKIRDAVKHGRSFCGRLLNYRKDGAPFWNLLTVTPI-RDDN 192
Query: 121 GRATHFVAVQVPI------VSRKHMRNSGMSYS 147
G+ F+ +QV + +S K MR + + S
Sbjct: 193 GKVIKFIGMQVEVSKYTEGLSDKRMRPNELPVS 225
>gi|242082458|ref|XP_002441654.1| hypothetical protein SORBIDRAFT_08g000260 [Sorghum bicolor]
gi|241942347|gb|EES15492.1| hypothetical protein SORBIDRAFT_08g000260 [Sorghum bicolor]
Length = 913
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 74/103 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 394 LATTLERIEKNFVITDPRLPDNPIIFASDSFLRLTEYCREEILGRNCRFLQGPETDRGTV 453
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I + TV+++NY K FWNL H+ P+R+ G+V
Sbjct: 454 KKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEV 496
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 70/108 (64%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D PD P++YAS F +TGY NEVVG+NCRFL G TD
Sbjct: 114 VSEELRAALSAFQQTFVVSDATRPDYPILYASAGFFNMTGYSSNEVVGRNCRFLQGSGTD 173
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I++++ RILNY+KD + FWNLL ++PI++ G+VL
Sbjct: 174 PVEISKIRQALAAGSNYCGRILNYKKDGTPFWNLLTVAPIKDEDGRVL 221
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ + R EI+GRN R QGP T+R T+ +IR
Sbjct: 398 LERIEKNFVITDPRLPDNPIIFASDSFLRLTEYCREEILGRNCRFLQGPETDRGTVKKIR 457
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 458 DAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GEVQYFIGVQL 504
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 69/119 (57%), Gaps = 1/119 (0%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + AL +F ++D + +PI++AS GF M+G+S E++GRN R QG T
Sbjct: 113 RVSEELRAALSAFQQTFVVSDATRPDYPILYASAGFFNMTGYSSNEVVGRNCRFLQGSGT 172
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+ I +IR+A+ +LNYKKDGTPFW L ++ + EDGR F+ +QV +
Sbjct: 173 DPVEISKIRQALAAGSNYCGRILNYKKDGTPFWNLLTVAPI-KDEDGRVLKFIGMQVEV 230
>gi|7804485|dbj|BAA95669.1| phototropin [Adiantum capillus-veneris]
Length = 1092
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 74/103 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD FL+LT Y R E++G+NCRFL G DT+ +
Sbjct: 558 LATTLERIEKNFVITDPRLPDNPIIFASDNFLELTEYSREEILGRNCRFLQGPDTNRETV 617
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
I+++I E+ TV++LNY K +FWNL H+ P+R+ G++
Sbjct: 618 KLIRDAIDNEKEVTVQLLNYTKTGRTFWNLFHLQPMRDHKGEL 660
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S + +L +Q+FV+ D PD+P++YAS F K+TGY +EV+G+NCRFL G +TD
Sbjct: 266 VSKDVLQALEGFQQTFVIADGTKPDLPIMYASAGFFKMTGYTSSEVIGRNCRFLQGKETD 325
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+E I R+LNY+KD S+FWNLL ISPI++ G VL
Sbjct: 326 PEEIDRIRECISKGSGYCGRLLNYKKDGSAFWNLLTISPIKDVDGSVL 373
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 68/109 (62%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP TNR T+ I
Sbjct: 561 TLERIEKNFVITDPRLPDNPIIFASDNFLELTEYSREEILGRNCRFLQGPDTNRETVKLI 620
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R+AI E+ + V LLNY K G FW LF + + + G +F VQ+
Sbjct: 621 RDAIDNEKEVTVQLLNYTKTGRTFWNLFHLQPMRDHK-GELQYFTGVQL 668
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 72/134 (53%), Gaps = 7/134 (5%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V +AL+ +F I D + PI++AS GF KM+G++ +E+IGRN R QG T+ I
Sbjct: 270 VLQALEGFQQTFVIADGTKPDLPIMYASAGFFKMTGYTSSEVIGRNCRFLQGKETDPEEI 329
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI------ 133
IRE I + LLNYKKDG+ FW L +S + DG ++ +QV +
Sbjct: 330 DRIRECISKGSGYCGRLLNYKKDGSAFWNLLTISPI-KDVDGSVLKYIGMQVEVSQFTEG 388
Query: 134 VSRKHMRNSGMSYS 147
MR +G+S S
Sbjct: 389 TKENAMRPNGLSES 402
>gi|168067656|ref|XP_001785726.1| PHOTB2 phototropin B2 blue light photoreceptor [Physcomitrella
patens subsp. patens]
gi|50510317|dbj|BAD32625.1| phototropin [Physcomitrella patens]
gi|162662632|gb|EDQ49461.1| PHOTB2 phototropin B2 blue light photoreceptor [Physcomitrella
patens subsp. patens]
Length = 1171
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 73/103 (70%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI ++FV+ DP LPD P+++ASD FL+LT Y R E++G+NCRFL G DTD V+
Sbjct: 630 LATTLERIAKNFVITDPRLPDNPIIFASDEFLELTEYTREEILGRNCRFLQGPDTDRAVV 689
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
QI+++I + TV++LNY K FWNL H+ +R+ +G++
Sbjct: 690 DQIRDAIAARRDITVQLLNYTKSGKPFWNLFHLQAMRDHNGEL 732
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 73/108 (67%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S + +L +Q+FV+ D PD P++YAS F +TGY EV+G+NCRFL G TD
Sbjct: 335 VSREIKDALSTFQQTFVVSDATQPDFPILYASAGFFNMTGYTPKEVIGRNCRFLQGPGTD 394
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+++++ ++ R+LNY+KD S+FWNLL I+PI++ GKVL
Sbjct: 395 PEDVTRIRDALKEGRSFCGRLLNYKKDGSAFWNLLTITPIKDDDGKVL 442
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 75/124 (60%), Gaps = 1/124 (0%)
Query: 8 IEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGR 67
+E+S R + + L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R
Sbjct: 618 VERSKEIRRGIDLATTLERIAKNFVITDPRLPDNPIIFASDEFLELTEYTREEILGRNCR 677
Query: 68 MFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
QGP T+R + +IR+AI R I V LLNY K G PFW LF + +G +F+
Sbjct: 678 FLQGPDTDRAVVDQIRDAIAARRDITVQLLNYTKSGKPFWNLFHLQ-AMRDHNGELQYFI 736
Query: 128 AVQV 131
VQ+
Sbjct: 737 GVQL 740
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 76/134 (56%), Gaps = 7/134 (5%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + PI++AS GF M+G++ E+IGRN R QGP T+ +
Sbjct: 339 IKDALSTFQQTFVVSDATQPDFPILYASAGFFNMTGYTPKEVIGRNCRFLQGPGTDPEDV 398
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV----- 134
IR+A++E R LLNYKKDG+ FW L ++ + +DG+ F+ +QV +
Sbjct: 399 TRIRDALKEGRSFCGRLLNYKKDGSAFWNLLTITPI-KDDDGKVLKFIGMQVEVSKHTEG 457
Query: 135 -SRKHMRNSGMSYS 147
K +R +G+ S
Sbjct: 458 KKEKALRPNGLPES 471
>gi|115457630|ref|NP_001052415.1| Os04g0304200 [Oryza sativa Japonica Group]
gi|113563986|dbj|BAF14329.1| Os04g0304200, partial [Oryza sativa Japonica Group]
Length = 771
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 76/103 (73%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP +PD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 243 LATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQGTV 302
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+E+I+ ++ TV+++NY K FWNL H+ P+R+ G++
Sbjct: 303 DKIREAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQKGEL 345
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP I +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ +IR
Sbjct: 247 LERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQGTVDKIR 306
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
EAIRE++ I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 307 EAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 353
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 43/58 (74%)
Query: 289 CRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
CRFL G DTD + +I+++++ ++ R+LNYRKD + FWNLL ++PIR+ +GKV+
Sbjct: 3 CRFLQGPDTDAAEVAKIRDAVKHGRSFCGRLLNYRKDGAPFWNLLTVTPIRDDNGKVI 60
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 67 RMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHF 126
R QGP T+ + +IR+A++ R LLNY+KDG PFW L ++ + ++G+ F
Sbjct: 4 RFLQGPDTDAAEVAKIRDAVKHGRSFCGRLLNYRKDGAPFWNLLTVTPI-RDDNGKVIKF 62
Query: 127 VAVQVPI------VSRKHMRNSGMSYS 147
+ +QV + +S K MR + + S
Sbjct: 63 IGMQVEVSKYTEGLSDKRMRPNELPVS 89
>gi|319782894|ref|YP_004142370.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317168782|gb|ADV12320.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 382
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 68/93 (73%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ S ++ DP D P+V+A+DAFL+LTGY+R+EV+G+NCRFL G TD + QI+ +I+
Sbjct: 37 RMSMIITDPRQQDNPIVFANDAFLRLTGYERHEVLGRNCRFLQGPKTDKAAVEQIRAAIE 96
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
E +V ILNYRKD S+FWN L+ISP+ N G
Sbjct: 97 DETDVSVDILNYRKDGSTFWNALYISPVSNDKG 129
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 68/109 (62%), Gaps = 1/109 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
S ITDP +PIVFA+ FL+++G+ R E++GRN R QGP+T++ + +IR AI +E
Sbjct: 39 SMIITDPRQQDNPIVFANDAFLRLTGYERHEVLGRNCRFLQGPKTDKAAVEQIRAAIEDE 98
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+ V++LNY+KDG+ FW +S V + G F A Q+ + RK
Sbjct: 99 TDVSVDILNYRKDGSTFWNALYISPV-SNDKGDLQFFFASQLDVSDRKQ 146
>gi|356559155|ref|XP_003547866.1| PREDICTED: phototropin-2-like [Glycine max]
Length = 990
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 76/103 (73%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 458 LATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATV 517
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I+ ++ TV+++NY K FWNL H+ P+R+ G++
Sbjct: 518 SRIRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQKGEL 560
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 88/155 (56%), Gaps = 9/155 (5%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + EAL L +F ++D + PI++AS GF M+G+S EIIGRN R QGP T
Sbjct: 179 RVSQELKEALATLQQTFVVSDATKPDCPIMYASSGFFTMTGYSSKEIIGRNCRFLQGPET 238
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
++ + +IR+A R R LLNYKKDGTPFW L ++ + K+D G F+ +QV +
Sbjct: 239 DKNEVAKIRDATRNGRSYCGRLLNYKKDGTPFWNLLTITPI--KDDHGNTIKFIGMQVEV 296
Query: 134 ------VSRKHMRNSGMSYSEDGGGSRLREIVFGS 162
V+ K +R +G+ S +R +E GS
Sbjct: 297 SKYTEGVNEKALRPNGLPKSLIRYDARQKEKALGS 331
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 71/108 (65%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L ++Q+FV+ D PD P++YAS F +TGY E++G+NCRFL G +TD
Sbjct: 180 VSQELKEALATLQQTFVVSDATKPDCPIMYASSGFFTMTGYSSKEIIGRNCRFLQGPETD 239
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+++ + ++ R+LNY+KD + FWNLL I+PI++ G +
Sbjct: 240 KNEVAKIRDATRNGRSYCGRLLNYKKDGTPFWNLLTITPIKDDHGNTI 287
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F I+DP + +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ IR
Sbjct: 462 LERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVSRIR 521
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AIRE+R I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 522 DAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 568
>gi|356526675|ref|XP_003531942.1| PREDICTED: phototropin-2-like [Glycine max]
Length = 996
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 76/103 (73%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 464 LATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATV 523
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I+ ++ TV+++NY K FWNL H+ P+R+ G++
Sbjct: 524 SRIRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQKGEL 566
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 114/252 (45%), Gaps = 19/252 (7%)
Query: 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSR 154
N N K+ WM F F + AT + SR H++ S G +
Sbjct: 60 NSANNSKEPVNKWMAFAKKPGFTVDGNSATKDKSTTEDNYSRNHLKEKPSS-----GQNF 114
Query: 155 LREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDLEKRKAATAIDNILSV 214
L E R +D AL ++T D ++ +L R
Sbjct: 115 LSEATI--AERTAEWGLAVDSGNFKALGGENTSGGSFDGDKSRNLSDR------------ 160
Query: 215 LTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFL 274
++ +G G SL +S L +L ++Q+FV+ D PD P++YAS F
Sbjct: 161 FVESTRTSGESNYGSESSLGVFPRVSQELKEALATLQQTFVVSDATKPDCPIMYASSGFF 220
Query: 275 KLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLH 334
+TGY E++G+NCRFL G +TD + +I+++ + ++ R+LNY+KD + FWNLL
Sbjct: 221 TMTGYSSKEIIGRNCRFLQGPETDKNEVAKIRDATRNGRSYCGRLLNYKKDGTPFWNLLT 280
Query: 335 ISPIRNASGKVL 346
++PI++ G +
Sbjct: 281 VTPIKDDHGNTI 292
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 88/155 (56%), Gaps = 9/155 (5%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + EAL L +F ++D + PI++AS GF M+G+S EIIGRN R QGP T
Sbjct: 184 RVSQELKEALATLQQTFVVSDATKPDCPIMYASSGFFTMTGYSSKEIIGRNCRFLQGPET 243
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
++ + +IR+A R R LLNYKKDGTPFW L ++ + K+D G F+ +QV +
Sbjct: 244 DKNEVAKIRDATRNGRSYCGRLLNYKKDGTPFWNLLTVTPI--KDDHGNTIKFIGMQVEV 301
Query: 134 ------VSRKHMRNSGMSYSEDGGGSRLREIVFGS 162
++ K +R +G+ S +R +E GS
Sbjct: 302 SKYTEGMNEKALRPNGLPKSLIRYDARQKEKALGS 336
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F I+DP + +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ IR
Sbjct: 468 LERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVSRIR 527
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AIRE+R I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 528 DAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 574
>gi|357517333|ref|XP_003628955.1| Phototropin [Medicago truncatula]
gi|355522977|gb|AET03431.1| Phototropin [Medicago truncatula]
Length = 941
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 76/103 (73%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 402 LATTLERIEKNFVISDPRLPDCPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATV 461
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I+ ++ TV+++NY K FWNL H+ P+R+ G++
Sbjct: 462 NRIRDAIKDQREITVQLINYTKSGKKFWNLFHLQPMRDQKGEL 504
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 79/129 (61%), Gaps = 1/129 (0%)
Query: 219 SQLTGRLVCGKRCSLPGM-GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLT 277
++ +G G L G+ +S L +L ++Q+FV+ D PD P++YAS F +T
Sbjct: 93 TRTSGESNYGSEAKLSGLFPRVSQELKDALSTLQQTFVVSDATKPDCPILYASSGFFSMT 152
Query: 278 GYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISP 337
GY EV+G+NCRFL G +TD + +I+++ + ++ R+LNY+K+ + FWNLL ++P
Sbjct: 153 GYSSKEVIGRNCRFLQGPETDQNEVAKIRDATKNGKSYCGRLLNYKKNGTPFWNLLTVTP 212
Query: 338 IRNASGKVL 346
I++ G +
Sbjct: 213 IKDDRGNTI 221
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 71/109 (65%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
L+ + +F I+DP + PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ I
Sbjct: 405 TLERIEKNFVISDPRLPDCPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVNRI 464
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R+AI+++R I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 465 RDAIKDQREITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 512
>gi|218194566|gb|EEC76993.1| hypothetical protein OsI_15306 [Oryza sativa Indica Group]
Length = 1015
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 76/103 (73%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP +PD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 379 LATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQGTV 438
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+E+I+ ++ TV+++NY K FWNL H+ P+R+ G++
Sbjct: 439 DKIREAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQKGEL 481
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 79/117 (67%)
Query: 230 RCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNC 289
R S + +S L +L ++Q+FV+ D PD P++YAS+ F +TGY EVVG+NC
Sbjct: 80 RASHDSLPRVSQELKDALSSLQQTFVVSDATRPDCPIIYASEGFFTMTGYSPREVVGRNC 139
Query: 290 RFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
RFL G DTD + +I+++++ ++ R+LNYRKD + FWNLL ++PIR+ +GKV+
Sbjct: 140 RFLQGPDTDAAEVAKIRDAVKHGRSFCGRLLNYRKDGAPFWNLLTVTPIRDDNGKVI 196
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP I +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ +IR
Sbjct: 383 LERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQGTVDKIR 442
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
EAIRE++ I V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 443 EAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQK-GELQYFIGVQL 489
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 84/153 (54%), Gaps = 7/153 (4%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAE 60
+D +G R + + +AL L +F ++D + PI++AS GF M+G+S E
Sbjct: 74 VDGGVGRASHDSLPRVSQELKDALSSLQQTFVVSDATRPDCPIIYASEGFFTMTGYSPRE 133
Query: 61 IIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED 120
++GRN R QGP T+ + +IR+A++ R LLNY+KDG PFW L ++ + ++
Sbjct: 134 VVGRNCRFLQGPDTDAAEVAKIRDAVKHGRSFCGRLLNYRKDGAPFWNLLTVTPI-RDDN 192
Query: 121 GRATHFVAVQVPI------VSRKHMRNSGMSYS 147
G+ F+ +QV + +S K MR + + S
Sbjct: 193 GKVIKFIGMQVEVSKYTEGLSDKRMRPNELPVS 225
>gi|168027784|ref|XP_001766409.1| PHOTB1 phototropin B1 blue light photoreceptor [Physcomitrella
patens subsp. patens]
gi|50510315|dbj|BAD32624.1| phototropin [Physcomitrella patens]
gi|162682318|gb|EDQ68737.1| PHOTB1 phototropin B1 blue light photoreceptor [Physcomitrella
patens subsp. patens]
Length = 1133
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 72/103 (69%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI ++FV+ DP LPD P+++ASD FL+LT Y R E++G+NCRFL G DTD V+
Sbjct: 596 LATTLERIAKNFVITDPRLPDNPIIFASDEFLELTEYTREEILGRNCRFLQGPDTDLAVV 655
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
QI+++I + TV++LNY K FWNL H+ +R+ G++
Sbjct: 656 DQIRDAIAARRDITVQLLNYTKSGKPFWNLFHLQAMRDHDGEL 698
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 77/121 (63%), Gaps = 1/121 (0%)
Query: 227 CGKRCSLP-GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVV 285
G S P + +S + +L +Q+FV+ D PD P++YAS F +TGY EV+
Sbjct: 288 AGSDASHPSNLPKVSREVKEALSTFQQTFVVSDATQPDFPILYASAGFFNMTGYTPKEVI 347
Query: 286 GQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
G+NCRFL G TD + +I+E+++ ++ R+LNY+KD S+FWNLL I+PI++ GKV
Sbjct: 348 GRNCRFLQGAGTDNADVARIREALKEGKSFCGRLLNYKKDGSAFWNLLTITPIKDDDGKV 407
Query: 346 L 346
L
Sbjct: 408 L 408
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 74/124 (59%), Gaps = 1/124 (0%)
Query: 8 IEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGR 67
+E+S R + + L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R
Sbjct: 584 LERSKEIRRGIDLATTLERIAKNFVITDPRLPDNPIIFASDEFLELTEYTREEILGRNCR 643
Query: 68 MFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
QGP T+ + +IR+AI R I V LLNY K G PFW LF + DG +F+
Sbjct: 644 FLQGPDTDLAVVDQIRDAIAARRDITVQLLNYTKSGKPFWNLFHLQ-AMRDHDGELQYFI 702
Query: 128 AVQV 131
VQ+
Sbjct: 703 GVQL 706
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 75/134 (55%), Gaps = 7/134 (5%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V EAL +F ++D + PI++AS GF M+G++ E+IGRN R QG T+ +
Sbjct: 305 VKEALSTFQQTFVVSDATQPDFPILYASAGFFNMTGYTPKEVIGRNCRFLQGAGTDNADV 364
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV----- 134
IREA++E + LLNYKKDG+ FW L ++ + +DG+ F+ +QV +
Sbjct: 365 ARIREALKEGKSFCGRLLNYKKDGSAFWNLLTITPI-KDDDGKVLKFIGMQVEVSKHTEG 423
Query: 135 -SRKHMRNSGMSYS 147
K +R +G+ S
Sbjct: 424 KKEKSLRPNGLPES 437
>gi|242345221|dbj|BAH80324.1| aureochrome1-like protein [Chattonella marina var. antiqua]
Length = 370
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 76/105 (72%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
SL +L ++SFVL DP LPD P+V+AS FL++TGY ++V+G+NCRFL G DT+
Sbjct: 239 SLVTALQTAQKSFVLTDPSLPDNPIVFASPGFLEMTGYTVDQVIGRNCRFLQGPDTNPKS 298
Query: 302 LYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+ +I T + C+V ILNYR D S+FWN ++S +R+ +GKV+
Sbjct: 299 IAKIRRAIATGEDCSVCILNYRVDGSTFWNNFYVSALRDINGKVV 343
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL SF +TDPS+ +PIVFAS GFL+M+G++ ++IGRN R QGP TN ++I +I
Sbjct: 243 ALQTAQKSFVLTDPSLPDNPIVFASPGFLEMTGYTVDQVIGRNCRFLQGPDTNPKSIAKI 302
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
R AI V +LNY+ DG+ FW F +S +G+ +F+ VQ
Sbjct: 303 RRAIATGEDCSVCILNYRVDGSTFWNNFYVS-ALRDINGKVVNFIGVQ 349
>gi|357161363|ref|XP_003579067.1| PREDICTED: phototropin-1A-like [Brachypodium distachyon]
Length = 921
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 73/103 (70%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 401 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYCREEILGRNCRFLQGPETDRATV 460
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I + TV+++NY K FWNL H+ P+R+ G V
Sbjct: 461 RKIRDAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGDV 503
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 71/116 (61%), Gaps = 3/116 (2%)
Query: 234 PGMGFI---SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCR 290
PG G I S L +L +Q+FV+ D P P++YAS F +TGY EVVG+NCR
Sbjct: 112 PGGGAIPRVSEELRAALSAFQQTFVVSDATKPGHPIMYASAGFFNMTGYTSKEVVGRNCR 171
Query: 291 FLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
FL G TD + +I++++ R+LNY+KD + FWNLL I+PI++ G+VL
Sbjct: 172 FLQGSGTDPAEIAKIRQALADGSNYCGRVLNYKKDGTPFWNLLTIAPIKDEDGRVL 227
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 71/119 (59%), Gaps = 1/119 (0%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + AL +F ++D + GHPI++AS GF M+G++ E++GRN R QG T
Sbjct: 119 RVSEELRAALSAFQQTFVVSDATKPGHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGT 178
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+ I +IR+A+ + +LNYKKDGTPFW L ++ + EDGR F+ +QV +
Sbjct: 179 DPAEIAKIRQALADGSNYCGRVLNYKKDGTPFWNLLTIAPI-KDEDGRVLKFIGMQVEV 236
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ + R EI+GRN R QGP T+R T+ +IR
Sbjct: 405 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYCREEILGRNCRFLQGPETDRATVRKIR 464
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 465 DAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQL 511
>gi|168044289|ref|XP_001774614.1| PHOTA2 phototropin A2 blue light photoreceptor [Physcomitrella
patens subsp. patens]
gi|50510313|dbj|BAD32623.1| phototropin [Physcomitrella patens]
gi|162674034|gb|EDQ60548.1| PHOTA2 phototropin A2 blue light photoreceptor [Physcomitrella
patens subsp. patens]
Length = 1095
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 72/103 (69%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI ++FV+ DP LPD P+++ASD FL+LT Y R EV+G+NCRFL G DTD +
Sbjct: 558 LATTLERIDKNFVITDPRLPDNPIIFASDEFLELTEYTREEVLGRNCRFLQGQDTDQNTV 617
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
QI+++I+ + TV++LNY K FWNL H+ +R+ G++
Sbjct: 618 QQIRDAIKENRDITVQLLNYTKSGKPFWNLFHLQAMRDQRGEL 660
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 72/108 (66%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L KQ+FV+ D PD P++YAS F +TGY EV+G NCRFL G DTD
Sbjct: 271 VSEDLLDALSSFKQTFVVSDATKPDYPIMYASAGFFSMTGYSPKEVIGYNCRFLQGPDTD 330
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+++++T + R+LNYRKD + FWNLL I+PI++ + KV+
Sbjct: 331 PMEVEKIRQAVRTGKPFCGRLLNYRKDGTQFWNLLTITPIKDENDKVI 378
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R E++GRN R QG T++ T+ +IR
Sbjct: 562 LERIDKNFVITDPRLPDNPIIFASDEFLELTEYTREEVLGRNCRFLQGQDTDQNTVQQIR 621
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI+E R I V LLNY K G PFW LF + + G +F+ VQ+
Sbjct: 622 DAIKENRDITVQLLNYTKSGKPFWNLFHLQ-AMRDQRGELQYFIGVQL 668
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 68/112 (60%), Gaps = 1/112 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+AL +F ++D + +PI++AS GF M+G+S E+IG N R QGP T+ + +
Sbjct: 277 DALSSFKQTFVVSDATKPDYPIMYASAGFFSMTGYSPKEVIGYNCRFLQGPDTDPMEVEK 336
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
IR+A+R +P LLNY+KDGT FW L ++ + E+ + F+ +QV +
Sbjct: 337 IRQAVRTGKPFCGRLLNYRKDGTQFWNLLTITPI-KDENDKVIKFIGMQVEV 387
>gi|168021149|ref|XP_001763104.1| PHOTA4 phototropin blue light photoreceptor [Physcomitrella patens
subsp. patens]
gi|162685587|gb|EDQ71981.1| PHOTA4 phototropin blue light photoreceptor [Physcomitrella patens
subsp. patens]
Length = 868
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 73/103 (70%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI ++FV+ DP LPD P+++ASD FL+LT Y R E++G+NCRFL G DTD V+
Sbjct: 323 LATTLERIPKNFVITDPRLPDNPIIFASDEFLELTEYSREEILGRNCRFLQGPDTDRAVV 382
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
QI+++I + TV++LNY K FWNL H+ +R+ +G++
Sbjct: 383 DQIRDAIAARRDITVQLLNYTKSGKPFWNLFHLQSMRDHNGEL 425
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 76/124 (61%), Gaps = 1/124 (0%)
Query: 8 IEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGR 67
+E+S R + + L+ +P +F ITDP + +PI+FAS FL+++ +SR EI+GRN R
Sbjct: 311 VERSKKTRRGIDLATTLERIPKNFVITDPRLPDNPIIFASDEFLELTEYSREEILGRNCR 370
Query: 68 MFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
QGP T+R + +IR+AI R I V LLNY K G PFW LF + +G +F+
Sbjct: 371 FLQGPDTDRAVVDQIRDAIAARRDITVQLLNYTKSGKPFWNLFHLQ-SMRDHNGELQYFI 429
Query: 128 AVQV 131
VQ+
Sbjct: 430 GVQL 433
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 74/108 (68%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S + +L +Q+FV+ D PD P++YAS F +TGY E++G++CRFL G +TD
Sbjct: 27 VSREVRDALSTFQQTFVVCDAVQPDFPILYASAGFFTMTGYTPKEIIGRSCRFLQGPETD 86
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ I+E++Q + R+LNY+KD+S+FWNLL ++PI++ +GKVL
Sbjct: 87 KADIASIREALQQGKNFCGRLLNYKKDRSAFWNLLTMTPIKDDAGKVL 134
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 78/140 (55%), Gaps = 9/140 (6%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + V +AL +F + D PI++AS GF M+G++ EIIGR+ R QGP T
Sbjct: 26 RVSREVRDALSTFQQTFVVCDAVQPDFPILYASAGFFTMTGYTPKEIIGRSCRFLQGPET 85
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
++ I IREA+++ + LLNYKKD + FW L M+ + K+D G+ ++ +QV +
Sbjct: 86 DKADIASIREALQQGKNFCGRLLNYKKDRSAFWNLLTMTPI--KDDAGKVLKYIGMQVEV 143
Query: 134 ------VSRKHMRNSGMSYS 147
+ K +R +G+ S
Sbjct: 144 SKHTDGLKEKALRPNGLPES 163
>gi|162457815|ref|NP_001104886.1| blue-light receptor phototropin 1 [Zea mays]
gi|2687358|gb|AAB88817.1| nonphototropic hypocotyl 1 [Zea mays]
Length = 911
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 73/103 (70%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 392 LATTLERIEKNFVITDPRLPDNPIIFASDSFLRLTEYCREEILGRNCRFLQGPETDRGTV 451
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I + TV+++NY K FWNL H+ P+R+ G V
Sbjct: 452 KKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDV 494
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 70/108 (64%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D PD P++YAS F +TGY NEVVG+NCRFL G TD
Sbjct: 114 VSEELRAALSAFQQTFVVSDATRPDHPILYASAGFFNMTGYSSNEVVGRNCRFLQGSGTD 173
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I++++ RILNY+KD + FWNLL ++PI++ G+VL
Sbjct: 174 PVEISKIRQALAAGSNYCGRILNYKKDGTPFWNLLTVAPIKDEDGRVL 221
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ + R EI+GRN R QGP T+R T+ +IR
Sbjct: 396 LERIEKNFVITDPRLPDNPIIFASDSFLRLTEYCREEILGRNCRFLQGPETDRGTVKKIR 455
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 456 DAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQL 502
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D + HPI++AS GF M+G+S E++GRN R QG T+ I +I
Sbjct: 121 ALSAFQQTFVVSDATRPDHPILYASAGFFNMTGYSSNEVVGRNCRFLQGSGTDPVEISKI 180
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R+A+ +LNYKKDGTPFW L ++ + EDGR F+ +QV +
Sbjct: 181 RQALAAGSNYCGRILNYKKDGTPFWNLLTVAPI-KDEDGRVLKFIGMQVEV 230
>gi|401782494|dbj|BAM36550.1| phototropin 2 [Fragaria x ananassa]
Length = 944
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 76/103 (73%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP +PD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 411 LATTLERIEKNFVISDPRIPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATV 470
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I+ ++ TV+++NY K FWNL H+ P+R+ G++
Sbjct: 471 QKIRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGEL 513
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 72/108 (66%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+SS L +L ++Q+FV+ D PD P++Y S F +TGY EV+G+NCRFL G +TD
Sbjct: 140 VSSELKTALATLQQTFVVSDATKPDCPIMYTSSGFFTMTGYSSKEVIGRNCRFLQGPETD 199
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+ +++T + R+ NY+KD + FWNLL ++PI++ +GK +
Sbjct: 200 QNEVSKIRNAVKTGSSYCGRLYNYKKDGTPFWNLLTVTPIKDDTGKTI 247
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F I+DP I +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ +IR
Sbjct: 415 LERIEKNFVISDPRIPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVQKIR 474
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AIRE+R I V L+NY K G FW LF + + + G +F+ VQ+
Sbjct: 475 DAIREQREITVQLINYTKSGKKFWNLFHLQPMRDHK-GELQYFIGVQL 521
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 9/161 (5%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
+Q N R + + AL L +F ++D + PI++ S GF M+G+S E+IGRN R
Sbjct: 133 DQVPNPRVSSELKTALATLQQTFVVSDATKPDCPIMYTSSGFFTMTGYSSKEVIGRNCRF 192
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFV 127
QGP T++ + +IR A++ L NYKKDGTPFW L ++ + K+D G+ F+
Sbjct: 193 LQGPETDQNEVSKIRNAVKTGSSYCGRLYNYKKDGTPFWNLLTVTPI--KDDTGKTIKFI 250
Query: 128 AVQVPI------VSRKHMRNSGMSYSEDGGGSRLREIVFGS 162
+QV + V+ K +R +G+ S +R +E GS
Sbjct: 251 GMQVEVSKFTEGVNEKALRPNGLPKSLIRYDARQKEKALGS 291
>gi|168025773|ref|XP_001765408.1| PHOTA3 phototropin photoreceptor [Physcomitrella patens subsp.
patens]
gi|162683461|gb|EDQ69871.1| PHOTA3 phototropin photoreceptor [Physcomitrella patens subsp.
patens]
Length = 1069
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 84/127 (66%), Gaps = 2/127 (1%)
Query: 222 TGRLVCGKRC--SLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGY 279
+ R V GK S+ G IS+ L +L +Q+FV+ D PD P+++AS FL +TGY
Sbjct: 231 SSRKVNGKSLEGSVDGRVRISADLQRALSSFQQTFVVSDATQPDYPIMFASACFLSMTGY 290
Query: 280 DRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIR 339
NE++GQNCRFL G TD T + +I+++++ + R+LNY+KD S+FWNLL+++PIR
Sbjct: 291 SENEIIGQNCRFLQGPQTDRTSVAKIRDALKQGRNFCGRLLNYKKDGSTFWNLLNLTPIR 350
Query: 340 NASGKVL 346
G+V+
Sbjct: 351 GDHGRVI 357
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 70/103 (67%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L SL RI ++FV+ DP LPD P+++ASD FL LT Y R EV+G+NCRFL G +T+ +
Sbjct: 521 LATSLERINKNFVITDPRLPDNPIIFASDEFLDLTEYSREEVLGRNCRFLQGPETNPETV 580
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
QI++S+ + TV++LNY K FWNL H+ +R+ G++
Sbjct: 581 KQIRDSVADGKDITVQLLNYTKSGKPFWNLFHLQTVRDHQGEL 623
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 70/109 (64%), Gaps = 1/109 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
+L+ + +F ITDP + +PI+FAS FL ++ +SR E++GRN R QGP TN T+ +I
Sbjct: 524 SLERINKNFVITDPRLPDNPIIFASDEFLDLTEYSREEVLGRNCRFLQGPETNPETVKQI 583
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R+++ + + I V LLNY K G PFW LF + V + G +F+ +Q+
Sbjct: 584 RDSVADGKDITVQLLNYTKSGKPFWNLFHLQTVRDHQ-GELQYFIGLQL 631
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 83/139 (59%), Gaps = 7/139 (5%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + AL +F ++D + +PI+FAS FL M+G+S EIIG+N R QGP+T
Sbjct: 249 RISADLQRALSSFQQTFVVSDATQPDYPIMFASACFLSMTGYSENEIIGQNCRFLQGPQT 308
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
+R ++ +IR+A+++ R LLNYKKDG+ FW L ++ + G + GR ++ +QV +
Sbjct: 309 DRTSVAKIRDALKQGRNFCGRLLNYKKDGSTFWNLLNLTPIRG-DHGRVIMYIGMQVEVS 367
Query: 135 S------RKHMRNSGMSYS 147
K +R +G+S S
Sbjct: 368 KFTEGSREKALRPNGLSAS 386
>gi|323450917|gb|EGB06796.1| hypothetical protein AURANDRAFT_28731 [Aureococcus anophagefferens]
Length = 143
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 72/95 (75%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+++FV+ +P LPD P+V+ S+AFL++TGYDR++V+G+NCRFL G TD + I++++
Sbjct: 9 QKAFVVTNPELPDNPIVWTSEAFLQMTGYDRDDVIGRNCRFLQGPRTDPRQVSVIRDAVY 68
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
E +V ILNYRKD ++FWN ++P+R+A GKV
Sbjct: 69 KEHEASVTILNYRKDGTTFWNRFFVAPLRDAEGKV 103
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 67/101 (66%), Gaps = 1/101 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+F +T+P + +PIV+ S FL+M+G+ R ++IGRN R QGPRT+ R + IR+A+ +E
Sbjct: 11 AFVVTNPELPDNPIVWTSEAFLQMTGYDRDDVIGRNCRFLQGPRTDPRQVSVIRDAVYKE 70
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
V +LNY+KDGT FW F ++ + E G+ T FV VQ
Sbjct: 71 HEASVTILNYRKDGTTFWNRFFVAPLRDAE-GKVTFFVGVQ 110
>gi|414881997|tpg|DAA59128.1| TPA: blue-light receptor phototropin 1 [Zea mays]
Length = 761
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 73/103 (70%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 242 LATTLERIEKNFVITDPRLPDNPIIFASDSFLRLTEYCREEILGRNCRFLQGPETDRGTV 301
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I + TV+++NY K FWNL H+ P+R+ G V
Sbjct: 302 KKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDV 344
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ + R EI+GRN R QGP T+R T+ +IR
Sbjct: 246 LERIEKNFVITDPRLPDNPIIFASDSFLRLTEYCREEILGRNCRFLQGPETDRGTVKKIR 305
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+
Sbjct: 306 DAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQL 352
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 49/71 (69%)
Query: 276 LTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHI 335
+TGY NEVVG+NCRFL G TD + +I++++ RILNY+KD + FWNLL +
Sbjct: 1 MTGYSSNEVVGRNCRFLQGSGTDPVEISKIRQALAAGSNYCGRILNYKKDGTPFWNLLTV 60
Query: 336 SPIRNASGKVL 346
+PI++ G+VL
Sbjct: 61 APIKDEDGRVL 71
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 53 MSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKM 112
M+G+S E++GRN R QG T+ I +IR+A+ +LNYKKDGTPFW L +
Sbjct: 1 MTGYSSNEVVGRNCRFLQGSGTDPVEISKIRQALAAGSNYCGRILNYKKDGTPFWNLLTV 60
Query: 113 SLVFGKEDGRATHFVAVQVPI 133
+ + EDGR F+ +QV +
Sbjct: 61 API-KDEDGRVLKFIGMQVEV 80
>gi|194709095|pdb|2Z6C|A Chain A, Crystal Structure Of Lov1 Domain Of Phototropin1 From
Arabidopsis Thaliana
gi|194709096|pdb|2Z6C|B Chain B, Crystal Structure Of Lov1 Domain Of Phototropin1 From
Arabidopsis Thaliana
Length = 129
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 73/112 (65%)
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G+ +S L +L +Q+FV+ D PD P++YAS F +TGY EVVG+NCRFL G
Sbjct: 1 GIPRVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVVGRNCRFLQG 60
Query: 295 VDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
TD L +I+E++ RILNY+KD +SFWNLL I+PI++ SGKVL
Sbjct: 61 SGTDADELAKIRETLAAGNNYCGRILNYKKDGTSFWNLLTIAPIKDESGKVL 112
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 3/123 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF M+G++ E++GRN R QG T+ +
Sbjct: 9 LKDALSTFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDADEL 68
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+IRE + +LNYKKDGT FW L ++ + E G+ F+ +QV + KH
Sbjct: 69 AKIRETLAAGNNYCGRILNYKKDGTSFWNLLTIAPI-KDESGKVLKFIGMQVEV--SKHT 125
Query: 140 RNS 142
+
Sbjct: 126 EGA 128
>gi|341613667|ref|ZP_08700536.1| hypothetical protein CJLT1_01890 [Citromicrobium sp. JLT1363]
Length = 358
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 71/101 (70%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
++ + + + L DPH PD P+V+A+ AF +LTGY+ E++G+NCRFL G TD + ++
Sbjct: 44 AMAQTRMAVCLSDPHQPDQPIVFANRAFRRLTGYEEEEILGRNCRFLQGAKTDRDAVARV 103
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+E+I+ E + +LNYRKD + FWN LH+ PI +++GK++
Sbjct: 104 REAIENEDVLVIELLNYRKDGTPFWNALHLGPIYDSNGKLI 144
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
E F++ + +A+ + + ++DP PIVFA+R F +++G+ EI+GRN R
Sbjct: 30 EDRFSDSSGVLFEQAMAQTRMAVCLSDPHQPDQPIVFANRAFRRLTGYEEEEILGRNCRF 89
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QG +T+R + +REAI E + + LLNY+KDGTPFW + ++ +G+ +F
Sbjct: 90 LQGAKTDRDAVARVREAIENEDVLVIELLNYRKDGTPFWNALHLGPIY-DSNGKLIYFFG 148
Query: 129 VQ 130
Q
Sbjct: 149 SQ 150
>gi|168043568|ref|XP_001774256.1| PHOTA1 phototropin A1 blue light photoreceptor [Physcomitrella
patens subsp. patens]
gi|50510311|dbj|BAD32622.1| phototropin [Physcomitrella patens]
gi|162674383|gb|EDQ60892.1| PHOTA1 phototropin A1 blue light photoreceptor [Physcomitrella
patens subsp. patens]
Length = 1070
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 73/103 (70%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD FL+LT Y R E++G+NCRFL G DTD +
Sbjct: 521 LATTLERIEKNFVITDPRLPDNPIIFASDEFLELTEYTREEILGRNCRFLQGPDTDQNTV 580
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I+ + TV++LNY K FWNL H+ +R+ G++
Sbjct: 581 QKIRDAIKENRDITVQLLNYTKSGKPFWNLFHLQAMRDHKGEL 623
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 71/108 (65%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L KQ+FV+ D PD P+VYAS F ++GY E++G NCRFL G DTD
Sbjct: 237 VSEELLDALSSFKQTFVVSDATKPDCPIVYASAGFFTMSGYSAKEIIGHNCRFLQGPDTD 296
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+ +++ + R+LNYRKD S+FWNLL I+PI++ + KV+
Sbjct: 297 PADVEKIRHAVKNGKNFCGRLLNYRKDGSTFWNLLTITPIKDENDKVV 344
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QGP T++ T+ +IR
Sbjct: 525 LERIEKNFVITDPRLPDNPIIFASDEFLELTEYTREEILGRNCRFLQGPDTDQNTVQKIR 584
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI+E R I V LLNY K G PFW LF + G +F+ VQ+
Sbjct: 585 DAIKENRDITVQLLNYTKSGKPFWNLFHLQ-AMRDHKGELQYFIGVQM 631
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+AL +F ++D + PIV+AS GF MSG+S EIIG N R QGP T+ + +
Sbjct: 243 DALSSFKQTFVVSDATKPDCPIVYASAGFFTMSGYSAKEIIGHNCRFLQGPDTDPADVEK 302
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
IR A++ + LLNY+KDG+ FW L ++ + E+ + F+ +QV +
Sbjct: 303 IRHAVKNGKNFCGRLLNYRKDGSTFWNLLTITPI-KDENDKVVKFIGMQVEV 353
>gi|162567476|ref|NP_419104.2| sensory box histidine kinase [Caulobacter crescentus CB15]
gi|221233226|ref|YP_002515662.1| photosensory histidine protein kinase LovK [Caulobacter crescentus
NA1000]
gi|160369950|gb|AAK22272.2| LOV histidine kinase LovK [Caulobacter crescentus CB15]
gi|220962398|gb|ACL93754.1| photosensory histidine protein kinase LovK [Caulobacter crescentus
NA1000]
Length = 368
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 79/123 (64%), Gaps = 8/123 (6%)
Query: 224 RLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNE 283
RL G P IS++ + + ++ D PD+P+++A+DAFL+LTGY R+E
Sbjct: 13 RLAAGHGVDDPFAAAISAT--------RMAMIVADATQPDIPIIFANDAFLRLTGYARDE 64
Query: 284 VVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
V+G+NCRFL G DTD + +++++ + V +LNYRKD S FWN L++SP+RN +G
Sbjct: 65 VIGRNCRFLQGPDTDPKAIQAVRDALAAGEDVAVDLLNYRKDGSPFWNALNMSPVRNDAG 124
Query: 344 KVL 346
+++
Sbjct: 125 QLV 127
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ + D + PI+FA+ FL+++G++R E+IGRN R QGP T+ + I +R+A+
Sbjct: 34 AMIVADATQPDIPIIFANDAFLRLTGYARDEVIGRNCRFLQGPDTDPKAIQAVRDALAAG 93
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ V+LLNY+KDG+PFW MS V + G+ +F QV + +K
Sbjct: 94 EDVAVDLLNYRKDGSPFWNALNMSPVR-NDAGQLVYFFGSQVDVTDKK 140
>gi|254409941|ref|ZP_05023721.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196182977|gb|EDX77961.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 776
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 70/100 (70%)
Query: 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIK 306
LG VL D PDMP+VY + AF ++TGY R EVVG+NCRFL GVDT+ V+ QI+
Sbjct: 34 LGAASCGIVLSDAGKPDMPIVYCNPAFERITGYSRQEVVGRNCRFLQGVDTNPQVVEQIR 93
Query: 307 ESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
++++TEQ V + NYRKD + FWN L ISPIR+A +V+
Sbjct: 94 QALRTEQEVKVVLKNYRKDGTPFWNELAISPIRDAKERVI 133
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 68/110 (61%), Gaps = 1/110 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
++D PIV+ + F +++G+SR E++GRN R QG TN + + +IR+A+R E+
Sbjct: 41 IVLSDAGKPDMPIVYCNPAFERITGYSRQEVVGRNCRFLQGVDTNPQVVEQIRQALRTEQ 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140
++V L NY+KDGTPFW +S + ++ R +F+ VQ I S+K +
Sbjct: 101 EVKVVLKNYRKDGTPFWNELAISPIRDAKE-RVIYFIGVQTDITSQKQAQ 149
>gi|256032285|pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 73/104 (70%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
SL +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+N RFL G +TD
Sbjct: 12 SLATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRAT 71
Query: 302 LYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +I+++I + TV+++NY K FWNL H+ P+R+ G V
Sbjct: 72 VRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDV 115
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+R T+ +IR
Sbjct: 17 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIR 76
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+ +H+R++
Sbjct: 77 DAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQLD--GTEHVRDAA 133
>gi|393766027|ref|ZP_10354584.1| signal transduction histidine kinase [Methylobacterium sp. GXF4]
gi|392728400|gb|EIZ85708.1| signal transduction histidine kinase [Methylobacterium sp. GXF4]
Length = 373
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 72/96 (75%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ + ++ +P LPD P+V+A+DAFL++TGY+R +V+G+NCR L G +TD + I+E++
Sbjct: 31 RMAMIVTNPRLPDNPIVFANDAFLRMTGYEREDVLGRNCRLLQGENTDRGAVALIREAVT 90
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
++ + +LNYRKD SSFWN L++SP+ N +G+VL
Sbjct: 91 AQRDIAIDLLNYRKDGSSFWNALYLSPVANEAGEVL 126
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 70/113 (61%), Gaps = 3/113 (2%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ +T+P + +PIVFA+ FL+M+G+ R +++GRN R+ QG T+R + IREA+ +
Sbjct: 33 AMIVTNPRLPDNPIVFANDAFLRMTGYEREDVLGRNCRLLQGENTDRGAVALIREAVTAQ 92
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR--KHMR 140
R I ++LLNY+KDG+ FW +S V E G F A Q+ + R H+R
Sbjct: 93 RDIAIDLLNYRKDGSSFWNALYLSPV-ANEAGEVLFFFASQLDVTDRVDAHLR 144
>gi|256032286|pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 73/104 (70%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
SL +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+N RFL G +TD
Sbjct: 12 SLATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNMRFLQGPETDRAT 71
Query: 302 LYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +I+++I + TV+++NY K FWNL H+ P+R+ G V
Sbjct: 72 VRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDV 115
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+R T+ +IR
Sbjct: 17 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNMRFLQGPETDRATVRKIR 76
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143
+AI + + V L+NY K G FW LF + + ++ G +F+ VQ+ +H+R++
Sbjct: 77 DAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQLD--GTEHVRDAA 133
>gi|87200360|ref|YP_497617.1| hypothetical protein Saro_2346 [Novosphingobium aromaticivorans DSM
12444]
gi|87136041|gb|ABD26783.1| signal transduction histidine kinase [Novosphingobium
aromaticivorans DSM 12444]
Length = 364
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 70/101 (69%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
++ + + + L DPH D+P+V+A+ AF LTGYD +EVVG+NCRFL G TD + +I
Sbjct: 49 AMAQTRMAICLCDPHEKDLPIVFANRAFRHLTGYDEHEVVGRNCRFLQGPGTDPAAVARI 108
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
K +++ E V +LNYRKD ++FWN LH+ P+ +A G+++
Sbjct: 109 KAALEREDVIVVELLNYRKDGTAFWNALHLGPVYDADGRLI 149
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
E +F + +A+ + + + DP PIVFA+R F ++G+ E++GRN R
Sbjct: 35 EDTFEGASGVLFEQAMAQTRMAICLCDPHEKDLPIVFANRAFRHLTGYDEHEVVGRNCRF 94
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QGP T+ + I+ A+ E I V LLNY+KDGT FW + V+ DGR +F
Sbjct: 95 LQGPGTDPAAVARIKAALEREDVIVVELLNYRKDGTAFWNALHLGPVY-DADGRLIYFFG 153
Query: 129 VQVPIVSRKHMR 140
Q + + +R
Sbjct: 154 SQWDVSDVRAVR 165
>gi|441415749|dbj|BAH80322.2| aureochrome1-like protein [Ochromonas danica]
Length = 312
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 80/131 (61%), Gaps = 14/131 (10%)
Query: 230 RCSLPGMGFISS--------------SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLK 275
RCS G I+S SL +L +Q+FV+ DP +PD P+VYAS FL
Sbjct: 157 RCSCGGPSVIASDPNTATRTLDDPDYSLVKALQTAQQNFVISDPSIPDNPIVYASQGFLT 216
Query: 276 LTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHI 335
LTGY +EV+G+NCRFL G +TD + ++++ ++ + TV +LNYRKD S+FWN L I
Sbjct: 217 LTGYALSEVLGRNCRFLQGPETDPKAVEKVRKGLERGEDTTVVLLNYRKDGSTFWNQLFI 276
Query: 336 SPIRNASGKVL 346
+ +R+ G V+
Sbjct: 277 AALRDGEGNVV 287
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 72/113 (63%), Gaps = 3/113 (2%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+AL +F I+DPSI +PIV+AS+GFL ++G++ +E++GRN R QGP T+ + + +
Sbjct: 186 KALQTAQQNFVISDPSIPDNPIVYASQGFLTLTGYALSEVLGRNCRFLQGPETDPKAVEK 245
Query: 82 IREAIREERPIEVNLLNYKKDGTPFW-MLFKMSLVFGKEDGRATHFVAVQVPI 133
+R+ + V LLNY+KDG+ FW LF +L G +G +++ VQ +
Sbjct: 246 VRKGLERGEDTTVVLLNYRKDGSTFWNQLFIAALRDG--EGNVVNYLGVQCKV 296
>gi|294626164|ref|ZP_06704770.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|294667549|ref|ZP_06732764.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292599516|gb|EFF43647.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292602669|gb|EFF46105.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 540
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 72/115 (62%)
Query: 232 SLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRF 291
SLP S + ++ + + DPHLPD P+V+A+ AFL++TGY +EV+G NCRF
Sbjct: 19 SLPVEKRRSDIFFAAVETTRMPMTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRF 78
Query: 292 LNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
L G DTD + ++ESI++ +LNYRKD SSFWN L ISP+ + G ++
Sbjct: 79 LQGPDTDPASISDVRESIESRSEFATEVLNYRKDGSSFWNALFISPVFDDKGNLV 133
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G++ E+IG N R QGP T+ +I ++RE+I
Sbjct: 41 MTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRFLQGPDTDPASISDVRESIESRS 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G +F Q+ + R+ ++
Sbjct: 101 EFATEVLNYRKDGSSFWNALFISPVF-DDKGNLVYFFGSQLDVSRRRDAEDA 151
>gi|307111881|gb|EFN60115.1| hypothetical protein CHLNCDRAFT_12895, partial [Chlorella
variabilis]
Length = 108
Score = 110 bits (276), Expect = 8e-22, Method: Composition-based stats.
Identities = 54/108 (50%), Positives = 72/108 (66%), Gaps = 7/108 (6%)
Query: 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTT 300
SSL +L R++ F L DP+LPD P+VYAS +FLKLTGY EVVG+NCRFL G TD
Sbjct: 1 SSLLTALSRVQDCFCLSDPNLPDCPIVYASPSFLKLTGYSSEEVVGRNCRFLQGPGTDPA 60
Query: 301 VLYQIKESIQT--EQACTVRILNYRK-----DKSSFWNLLHISPIRNA 341
+ Q+++++ + TV +LNYRK + FWN LHISP+R+A
Sbjct: 61 AVAQLRQALAAVPPKPVTVTLLNYRKADAEGRQQPFWNSLHISPLRDA 108
Score = 80.1 bits (196), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 7/98 (7%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL + D F ++DP++ PIV+AS FLK++G+S E++GRN R QGP T+ + ++
Sbjct: 6 ALSRVQDCFCLSDPNLPDCPIVYASPSFLKLTGYSSEEVVGRNCRFLQGPGTDPAAVAQL 65
Query: 83 REAIRE--ERPIEVNLLNYKKDGT-----PFWMLFKMS 113
R+A+ +P+ V LLNY+K PFW +S
Sbjct: 66 RQALAAVPPKPVTVTLLNYRKADAEGRQQPFWNSLHIS 103
>gi|302819840|ref|XP_002991589.1| hypothetical protein SELMODRAFT_186203 [Selaginella moellendorffii]
gi|300140622|gb|EFJ07343.1| hypothetical protein SELMODRAFT_186203 [Selaginella moellendorffii]
Length = 926
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 74/103 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G TD +
Sbjct: 401 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGAGTDVETV 460
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I+ ++ TV++LNY K FWNL H+ +++ G++
Sbjct: 461 KKIRDAIKEQRDITVQLLNYTKSGKPFWNLFHLQAMKDNQGEL 503
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 72/108 (66%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D D P++YAS F +TGY EV+G+NCRFL G TD
Sbjct: 136 VSKELREALSTFQQTFVVSDATKADYPILYASAGFYNMTGYTSKEVIGRNCRFLQGSGTD 195
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+++++ ++ R+LNY+KD + FWNLL I+PI++ +GK+L
Sbjct: 196 PIDVSKIRDALREGESFCGRLLNYKKDGTPFWNLLTIAPIKDENGKIL 243
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QG T+ T+ +IR
Sbjct: 405 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGAGTDVETVKKIR 464
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI+E+R I V LLNY K G PFW LF + G +F+ VQ+
Sbjct: 465 DAIKEQRDITVQLLNYTKSGKPFWNLFHLQ-AMKDNQGELQYFIGVQL 511
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 73/119 (61%), Gaps = 1/119 (0%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + EAL +F ++D + + +PI++AS GF M+G++ E+IGRN R QG T
Sbjct: 135 RVSKELREALSTFQQTFVVSDATKADYPILYASAGFYNMTGYTSKEVIGRNCRFLQGSGT 194
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+ + +IR+A+RE LLNYKKDGTPFW L ++ + E+G+ ++ +QV +
Sbjct: 195 DPIDVSKIRDALREGESFCGRLLNYKKDGTPFWNLLTIAPI-KDENGKILKYIGMQVEV 252
>gi|418517131|ref|ZP_13083298.1| histidine kinase [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
gi|418520507|ref|ZP_13086556.1| histidine kinase [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
gi|410703888|gb|EKQ62376.1| histidine kinase [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
gi|410706188|gb|EKQ64651.1| histidine kinase [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
Length = 540
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 73/115 (63%)
Query: 232 SLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRF 291
SLP S + ++ + + DPHLPD P+V+A+ AFL++TGY +EV+G NCRF
Sbjct: 19 SLPVEKHRSDIFFAAVETTRMPMTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRF 78
Query: 292 LNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
L G +TD + ++ESI++ + +LNYRKD SSFWN L ISP+ + G ++
Sbjct: 79 LQGPETDPASISDVRESIESRREFATEVLNYRKDGSSFWNALFISPVFDDKGNLV 133
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 68/112 (60%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G++ E+IG N R QGP T+ +I ++RE+I R
Sbjct: 41 MTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRFLQGPETDPASISDVRESIESRR 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G +F Q+ + R+ ++
Sbjct: 101 EFATEVLNYRKDGSSFWNALFISPVF-DDKGNLVYFFGSQLDVSRRRDAEDA 151
>gi|21243288|ref|NP_642870.1| histidine kinase [Xanthomonas axonopodis pv. citri str. 306]
gi|21108826|gb|AAM37406.1| sensor histidine kinase [Xanthomonas axonopodis pv. citri str. 306]
Length = 540
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 73/115 (63%)
Query: 232 SLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRF 291
SLP S + ++ + + DPHLPD P+V+A+ AFL++TGY +EV+G NCRF
Sbjct: 19 SLPVEKHRSDIFFAAVETTRMPMTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRF 78
Query: 292 LNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
L G +TD + ++ESI++ + +LNYRKD SSFWN L ISP+ + G ++
Sbjct: 79 LQGPETDPASISDVRESIESRREFATEVLNYRKDGSSFWNALFISPVFDDKGNLV 133
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 68/112 (60%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G++ E+IG N R QGP T+ +I ++RE+I R
Sbjct: 41 MTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRFLQGPETDPASISDVRESIESRR 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G +F Q+ + R+ ++
Sbjct: 101 EFATEVLNYRKDGSSFWNALFISPVF-DDKGNLVYFFGSQLDVSRRRDAEDA 151
>gi|302779868|ref|XP_002971709.1| hypothetical protein SELMODRAFT_172224 [Selaginella moellendorffii]
gi|300160841|gb|EFJ27458.1| hypothetical protein SELMODRAFT_172224 [Selaginella moellendorffii]
Length = 930
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 74/103 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G TD +
Sbjct: 401 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGAGTDVETV 460
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I+ ++ TV++LNY K FWNL H+ +++ G++
Sbjct: 461 KKIRDAIREQRDITVQLLNYTKSGKPFWNLFHLQAMKDNKGEL 503
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 97/173 (56%), Gaps = 4/173 (2%)
Query: 176 DRVLALDSDDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGK--RCSL 233
D V+A + + GL ++ + + KA T+ + S S ++GR R
Sbjct: 73 DAVIAERAAEWGLTVKADMNSGKVHGVKARTSAEEKRS--RRNSDMSGRTSEEHEGRTDS 130
Query: 234 PGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLN 293
+ +S L +L +Q+FV+ D D P++YAS F +TGY EV+G+NCRFL
Sbjct: 131 TSVPRVSKELREALSTFQQTFVVSDATKADYPILYASAGFYNMTGYTSKEVIGRNCRFLQ 190
Query: 294 GVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
G TD + +I+++++ Q+ R+LNY+KD + FWNLL I+PI++ +GK+L
Sbjct: 191 GSGTDPIDVSKIRDALREGQSFCGRLLNYKKDGTPFWNLLTIAPIKDENGKIL 243
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ ++R EI+GRN R QG T+ T+ +IR
Sbjct: 405 LERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGAGTDVETVKKIR 464
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AIRE+R I V LLNY K G PFW LF + G +F+ VQ+
Sbjct: 465 DAIREQRDITVQLLNYTKSGKPFWNLFHLQ-AMKDNKGELQYFIGVQL 511
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + EAL +F ++D + + +PI++AS GF M+G++ E+IGRN R QG T
Sbjct: 135 RVSKELREALSTFQQTFVVSDATKADYPILYASAGFYNMTGYTSKEVIGRNCRFLQGSGT 194
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+ + +IR+A+RE + LLNYKKDGTPFW L ++ + E+G+ ++ +QV +
Sbjct: 195 DPIDVSKIRDALREGQSFCGRLLNYKKDGTPFWNLLTIAPI-KDENGKILKYIGMQVEV 252
>gi|46203570|ref|ZP_00051334.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
magnetotacticum MS-1]
Length = 425
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 69/107 (64%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + V++DPH D P+V+ + AFL++TGY R EV+G+NCR L G DTD
Sbjct: 29 SDIFFAAVAMTRMPMVVVDPHRDDCPIVFVNQAFLEMTGYTREEVIGRNCRLLQGPDTDP 88
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
++E+I + + ILNYRKD +SFWN L +SP+ NA+G ++
Sbjct: 89 AARMAVREAIAQRRDIAIEILNYRKDGASFWNALFVSPVYNAAGDLV 135
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 59/94 (62%), Gaps = 2/94 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+ +P + DP PIVF ++ FL+M+G++R E+IGRN R+ QGP T+ M +
Sbjct: 37 AMTRMP--MVVVDPHRDDCPIVFVNQAFLEMTGYTREEVIGRNCRLLQGPDTDPAARMAV 94
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVF 116
REAI + R I + +LNY+KDG FW +S V+
Sbjct: 95 REAIAQRRDIAIEILNYRKDGASFWNALFVSPVY 128
>gi|85374357|ref|YP_458419.1| hypothetical protein ELI_07650 [Erythrobacter litoralis HTCC2594]
gi|84787440|gb|ABC63622.1| sensory box histidine kinase [Erythrobacter litoralis HTCC2594]
Length = 362
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 70/100 (70%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
++ + + + L DPH PD P+V+ + AF +LTGY+ +++G+NCRFL G TD + + +I
Sbjct: 46 AMAQTRMAVCLTDPHQPDHPIVFCNAAFERLTGYEEKDIIGRNCRFLQGARTDESQVARI 105
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
++++ E+ V +LNYRKD S+FWN LH+ PI + SGK+
Sbjct: 106 RDALAKEEVAVVELLNYRKDGSTFWNALHLGPIYDESGKL 145
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 11 SFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQ 70
+F L +A+ + + +TDP HPIVF + F +++G+ +IIGRN R Q
Sbjct: 34 AFPGASGLLFEQAMAQTRMAVCLTDPHQPDHPIVFCNAAFERLTGYEEKDIIGRNCRFLQ 93
Query: 71 GPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
G RT+ + IR+A+ +E V LLNY+KDG+ FW + ++ E G+ +F Q
Sbjct: 94 GARTDESQVARIRDALAKEEVAVVELLNYRKDGSTFWNALHLGPIY-DESGKLKYFFRSQ 152
>gi|260568124|ref|ZP_05838593.1| sensory transduction histidine kinase [Brucella suis bv. 4 str. 40]
gi|260154789|gb|EEW89870.1| sensory transduction histidine kinase [Brucella suis bv. 4 str. 40]
Length = 489
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 67/92 (72%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + IK +I E+
Sbjct: 34 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEK 93
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ I+NY+K +FWN LHISP+ NA+G++
Sbjct: 94 PIDIDIINYKKSGEAFWNRLHISPVHNANGRL 125
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 36 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 95
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V +GR HFV+ Q+ +
Sbjct: 96 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQLDV 135
>gi|17989024|ref|NP_541657.1| sensory transduction histidine kinase [Brucella melitensis bv. 1
str. 16M]
gi|260564680|ref|ZP_05835165.1| sensory transduction histidine kinase [Brucella melitensis bv. 1
str. 16M]
gi|261756795|ref|ZP_06000504.1| sensory transduction histidine kinase [Brucella sp. F5/99]
gi|265999105|ref|ZP_05465017.2| sensory transduction histidine kinase [Brucella melitensis bv. 2
str. 63/9]
gi|297249594|ref|ZP_06933295.1| PAS domain:PAS-associated domain:PAC domain-containing protein
[Brucella abortus bv. 5 str. B3196]
gi|340792373|ref|YP_004757837.1| sensory box protein, light activated LOV domain-containing protein
[Brucella pinnipedialis B2/94]
gi|423168551|ref|ZP_17155253.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI435a]
gi|423172016|ref|ZP_17158690.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI474]
gi|423174253|ref|ZP_17160923.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI486]
gi|423176130|ref|ZP_17162796.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI488]
gi|423181445|ref|ZP_17168085.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI010]
gi|423184578|ref|ZP_17171214.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI016]
gi|423187728|ref|ZP_17174341.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI021]
gi|423190149|ref|ZP_17176758.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI259]
gi|81850374|sp|Q8YC53.1|LOVHK_BRUME RecName: Full=Blue-light-activated histidine kinase; AltName:
Full=BM-LOV-histidine kinase; Short=BM-LOV-HK
gi|221272074|sp|Q2YKK7.2|LOVHK_BRUA2 RecName: Full=Blue-light-activated histidine kinase; AltName:
Full=BA-LOV-histidine kinase; Short=BA-LOV-HK
gi|221272075|sp|Q577Y7.2|LOVHK_BRUAB RecName: Full=Blue-light-activated histidine kinase
gi|221272076|sp|A9MBM8.2|LOVHK_BRUC2 RecName: Full=Blue-light-activated histidine kinase
gi|221272078|sp|A9WYQ7.2|LOVHK_BRUSI RecName: Full=Blue-light-activated histidine kinase
gi|221272079|sp|Q8FW73.2|LOVHK_BRUSU RecName: Full=Blue-light-activated histidine kinase
gi|17984864|gb|AAL53921.1| sensory transduction histidine kinase [Brucella melitensis bv. 1
str. 16M]
gi|260152323|gb|EEW87416.1| sensory transduction histidine kinase [Brucella melitensis bv. 1
str. 16M]
gi|261736779|gb|EEY24775.1| sensory transduction histidine kinase [Brucella sp. F5/99]
gi|263092221|gb|EEZ16518.1| sensory transduction histidine kinase [Brucella melitensis bv. 2
str. 63/9]
gi|297173463|gb|EFH32827.1| PAS domain:PAS-associated domain:PAC domain-containing protein
[Brucella abortus bv. 5 str. B3196]
gi|340560832|gb|AEK56069.1| sensory box protein, light activated LOV domain protein [Brucella
pinnipedialis B2/94]
gi|374536438|gb|EHR07958.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI474]
gi|374537757|gb|EHR09267.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI435a]
gi|374540254|gb|EHR11756.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI486]
gi|374546035|gb|EHR17495.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI010]
gi|374546878|gb|EHR18337.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI016]
gi|374554732|gb|EHR26142.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI488]
gi|374555532|gb|EHR26941.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI021]
gi|374556189|gb|EHR27594.1| blue-light-activated histidine kinase [Brucella abortus bv. 1 str.
NI259]
Length = 489
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 67/92 (72%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + IK +I E+
Sbjct: 34 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEK 93
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ I+NY+K +FWN LHISP+ NA+G++
Sbjct: 94 PIDIDIINYKKSGEAFWNRLHISPVHNANGRL 125
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 36 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 95
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V +GR HFV+ Q+ +
Sbjct: 96 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQLDV 135
>gi|225629082|ref|ZP_03787115.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo]
gi|237817103|ref|ZP_04596095.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A]
gi|225615578|gb|EEH12627.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo]
gi|237787916|gb|EEP62132.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A]
Length = 496
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 67/92 (72%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + IK +I E+
Sbjct: 41 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEK 100
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ I+NY+K +FWN LHISP+ NA+G++
Sbjct: 101 PIDIDIINYKKSGEAFWNRLHISPVHNANGRL 132
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 43 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 102
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V +GR HFV+ Q+ +
Sbjct: 103 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQLDV 142
>gi|23500332|ref|NP_699772.1| sensory box protein [Brucella suis 1330]
gi|83269536|ref|YP_418827.1| PAS domain-containing protein [Brucella melitensis biovar Abortus
2308]
gi|161620650|ref|YP_001594536.1| PAS domain-containing protein [Brucella canis ATCC 23365]
gi|163844740|ref|YP_001622395.1| PAS domain-containing protein [Brucella suis ATCC 23445]
gi|225686374|ref|YP_002734346.1| PAS domain S-box-containing protein [Brucella melitensis ATCC
23457]
gi|376278554|ref|YP_005108587.1| sensory box protein [Brucella suis VBI22]
gi|384223115|ref|YP_005614280.1| sensory box protein [Brucella suis 1330]
gi|384446725|ref|YP_005660943.1| sensory transduction histidine kinase [Brucella melitensis NI]
gi|23463946|gb|AAN33777.1| sensory box protein [Brucella suis 1330]
gi|82939810|emb|CAJ12818.1| PAS domain:PAS-associated C-terminal domain:PAC motif [Brucella
melitensis biovar Abortus 2308]
gi|161337461|gb|ABX63765.1| PAS domain S-box [Brucella canis ATCC 23365]
gi|163675463|gb|ABY39573.1| PAS domain S-box [Brucella suis ATCC 23445]
gi|225642479|gb|ACO02392.1| PAS domain S-box-containing protein [Brucella melitensis ATCC
23457]
gi|343384563|gb|AEM20054.1| sensory box protein [Brucella suis 1330]
gi|349744722|gb|AEQ10264.1| sensory transduction histidine kinase [Brucella melitensis NI]
gi|358259992|gb|AEU07725.1| sensory box protein [Brucella suis VBI22]
Length = 463
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 67/92 (72%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + IK +I E+
Sbjct: 8 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEK 67
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ I+NY+K +FWN LHISP+ NA+G++
Sbjct: 68 PIDIDIINYKKSGEAFWNRLHISPVHNANGRL 99
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 10 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 69
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V +GR HFV+ Q+ +
Sbjct: 70 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQLDV 109
>gi|62317555|ref|YP_223408.1| sensory box protein [Brucella abortus bv. 1 str. 9-941]
gi|376271195|ref|YP_005114240.1| PAS domain S-box-containing protein [Brucella abortus A13334]
gi|376276712|ref|YP_005152773.1| PAS domain S-box-containing protein [Brucella canis HSK A52141]
gi|384213098|ref|YP_005602181.1| PAS domain S-box-containing protein [Brucella melitensis M5-90]
gi|384410198|ref|YP_005598818.1| PAS domain S-box-containing protein [Brucella melitensis M28]
gi|62197748|gb|AAX76047.1| sensory box protein [Brucella abortus bv. 1 str. 9-941]
gi|326410745|gb|ADZ67809.1| PAS domain S-box-containing protein [Brucella melitensis M28]
gi|326554038|gb|ADZ88677.1| PAS domain S-box-containing protein [Brucella melitensis M5-90]
gi|363402367|gb|AEW19336.1| PAS domain S-box-containing protein [Brucella abortus A13334]
gi|363405086|gb|AEW15380.1| PAS domain S-box-containing protein [Brucella canis HSK A52141]
Length = 458
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 67/92 (72%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + IK +I E+
Sbjct: 3 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEK 62
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ I+NY+K +FWN LHISP+ NA+G++
Sbjct: 63 PIDIDIINYKKSGEAFWNRLHISPVHNANGRL 94
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 5 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 64
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V +GR HFV+ Q+ +
Sbjct: 65 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQLDV 104
>gi|387766388|pdb|4EEU|A Chain A, Crystal Structure Of Philov2.1
Length = 118
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 69/94 (73%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
I++SFV+ DP LPD P+++ASD FL+LT Y R E++G+N RFL G +TD + +I+++I
Sbjct: 9 IEKSFVITDPRLPDYPIIFASDGFLELTEYSREEIMGRNARFLQGPETDQATVQKIRDAI 68
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+ ++ TV+++NY K FWNLLH+ P+R+ G
Sbjct: 69 RDQRETTVQLINYTKSGKKFWNLLHLQPVRDRKG 102
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 69/102 (67%), Gaps = 1/102 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SF ITDP + +PI+FAS GFL+++ +SR EI+GRN R QGP T++ T+ +IR+AIR++
Sbjct: 12 SFVITDPRLPDYPIIFASDGFLELTEYSREEIMGRNARFLQGPETDQATVQKIRDAIRDQ 71
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R V L+NY K G FW L + V ++ G +F+ VQ+
Sbjct: 72 RETTVQLINYTKSGKKFWNLLHLQPVRDRKGG-LQYFIGVQL 112
>gi|261323168|ref|ZP_05962365.1| signal transduction histidine kinase [Brucella neotomae 5K33]
gi|261299148|gb|EEY02645.1| signal transduction histidine kinase [Brucella neotomae 5K33]
Length = 456
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 67/92 (72%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + IK +I E+
Sbjct: 1 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEK 60
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ I+NY+K +FWN LHISP+ NA+G++
Sbjct: 61 PIDIDIINYKKSGEAFWNRLHISPVHNANGRL 92
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 3 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 62
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V +GR HFV+ Q+ +
Sbjct: 63 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQLDV 102
>gi|260756648|ref|ZP_05868996.1| signal transduction histidine kinase [Brucella abortus bv. 6 str.
870]
gi|260763317|ref|ZP_05875649.1| signal transduction histidine kinase [Brucella abortus bv. 2 str.
86/8/59]
gi|260882465|ref|ZP_05894079.1| signal transduction histidine kinase [Brucella abortus bv. 9 str.
C68]
gi|261216041|ref|ZP_05930322.1| signal transduction histidine kinase [Brucella abortus bv. 3 str.
Tulya]
gi|261220425|ref|ZP_05934706.1| signal transduction histidine kinase [Brucella ceti B1/94]
gi|261318734|ref|ZP_05957931.1| signal transduction histidine kinase [Brucella pinnipedialis B2/94]
gi|261750298|ref|ZP_05994007.1| signal transduction histidine kinase [Brucella suis bv. 5 str. 513]
gi|261753571|ref|ZP_05997280.1| signal transduction histidine kinase [Brucella suis bv. 3 str. 686]
gi|265986532|ref|ZP_06099089.1| signal transduction histidine kinase [Brucella pinnipedialis
M292/94/1]
gi|265989903|ref|ZP_06102460.1| signal transduction histidine kinase [Brucella melitensis bv. 1
str. Rev.1]
gi|265996224|ref|ZP_06108781.1| signal transduction histidine kinase [Brucella ceti M490/95/1]
gi|294853615|ref|ZP_06794287.1| PAS domain:PAS-associated domain:PAC domain-containing protein
[Brucella sp. NVSL 07-0026]
gi|260673738|gb|EEX60559.1| signal transduction histidine kinase [Brucella abortus bv. 2 str.
86/8/59]
gi|260676756|gb|EEX63577.1| signal transduction histidine kinase [Brucella abortus bv. 6 str.
870]
gi|260871993|gb|EEX79062.1| signal transduction histidine kinase [Brucella abortus bv. 9 str.
C68]
gi|260917648|gb|EEX84509.1| signal transduction histidine kinase [Brucella abortus bv. 3 str.
Tulya]
gi|260919009|gb|EEX85662.1| signal transduction histidine kinase [Brucella ceti B1/94]
gi|261297957|gb|EEY01454.1| signal transduction histidine kinase [Brucella pinnipedialis B2/94]
gi|261740051|gb|EEY27977.1| signal transduction histidine kinase [Brucella suis bv. 5 str. 513]
gi|261743324|gb|EEY31250.1| signal transduction histidine kinase [Brucella suis bv. 3 str. 686]
gi|262550521|gb|EEZ06682.1| signal transduction histidine kinase [Brucella ceti M490/95/1]
gi|263000572|gb|EEZ13262.1| signal transduction histidine kinase [Brucella melitensis bv. 1
str. Rev.1]
gi|264658729|gb|EEZ28990.1| signal transduction histidine kinase [Brucella pinnipedialis
M292/94/1]
gi|294819270|gb|EFG36270.1| PAS domain:PAS-associated domain:PAC domain-containing protein
[Brucella sp. NVSL 07-0026]
Length = 456
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 67/92 (72%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + IK +I E+
Sbjct: 1 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEK 60
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ I+NY+K +FWN LHISP+ NA+G++
Sbjct: 61 PIDIDIINYKKSGEAFWNRLHISPVHNANGRL 92
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 3 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 62
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V +GR HFV+ Q+ +
Sbjct: 63 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQLDV 102
>gi|256015365|ref|YP_003105374.1| sensory box protein, light activated LOV domain-containing protein
[Brucella microti CCM 4915]
gi|255998025|gb|ACU49712.1| sensory box protein, light activated LOV domain protein [Brucella
microti CCM 4915]
Length = 489
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 67/92 (72%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + IK +I E+
Sbjct: 34 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEK 93
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ I+NY+K +FWN LHISP+ NA+G++
Sbjct: 94 PIDIDIINYKKSGEAFWNRLHISPVHNANGRL 125
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 36 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 95
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V +GR HFV+ Q+ +
Sbjct: 96 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQLDV 135
>gi|189022810|ref|YP_001932550.1| Sensory transduction histidine kinase [Brucella abortus S19]
gi|260544791|ref|ZP_05820612.1| sensory transduction histidine kinase [Brucella abortus NCTC 8038]
gi|221272017|sp|B2SB67.1|LOVHK_BRUA1 RecName: Full=Blue-light-activated histidine kinase
gi|189021384|gb|ACD74105.1| Sensory transduction histidine kinase [Brucella abortus S19]
gi|260098062|gb|EEW81936.1| sensory transduction histidine kinase [Brucella abortus NCTC 8038]
Length = 489
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 67/92 (72%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + IK +I E+
Sbjct: 34 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEK 93
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ I+NY+K +FWN LHISP+ NA+G++
Sbjct: 94 PIDIDIINYKKSGEAFWNRLHISPVHNANGRL 125
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 36 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 95
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V +GR HFV+ Q+ +
Sbjct: 96 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQLDV 135
>gi|261217205|ref|ZP_05931486.1| signal transduction histidine kinase [Brucella ceti M13/05/1]
gi|261320076|ref|ZP_05959273.1| signal transduction histidine kinase [Brucella ceti M644/93/1]
gi|260922294|gb|EEX88862.1| signal transduction histidine kinase [Brucella ceti M13/05/1]
gi|261292766|gb|EEX96262.1| signal transduction histidine kinase [Brucella ceti M644/93/1]
Length = 456
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 67/92 (72%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + IK +I E+
Sbjct: 1 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEK 60
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ I+NY+K +FWN LHISP+ NA+G++
Sbjct: 61 PIDIDIINYKKSGEAFWNRLHISPVHNANGRL 92
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 3 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 62
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V +GR HFV+ Q+ +
Sbjct: 63 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQLDV 102
>gi|265992992|ref|ZP_06105549.1| signal transduction histidine kinase [Brucella melitensis bv. 3
str. Ether]
gi|262763862|gb|EEZ09894.1| signal transduction histidine kinase [Brucella melitensis bv. 3
str. Ether]
Length = 456
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 67/92 (72%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + IK +I E+
Sbjct: 1 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEK 60
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ I+NY+K +FWN LHISP+ NA+G++
Sbjct: 61 PIDIDIINYKKSGEAFWNRLHISPVHNANGRL 92
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 3 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 62
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V +GR HFV+ Q+ +
Sbjct: 63 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQLDV 102
>gi|221272077|sp|A5VUS1.2|LOVHK_BRUO2 RecName: Full=Blue-light-activated histidine kinase
Length = 489
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 67/92 (72%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + IK +I E+
Sbjct: 34 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVCAIKSAIAAEK 93
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ I+NY+K +FWN LHISP+ NA+G++
Sbjct: 94 PIDIDIINYKKSGEAFWNRLHISPVHNANGRL 125
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 36 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVCAIKSAIAAEKPI 95
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V +GR HFV+ Q+ +
Sbjct: 96 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQLDV 135
>gi|387766383|pdb|4EEP|A Chain A, Crystal Structure Of Lov2 Domain Of Arabidopsis Thaliana
Phototropin 2
Length = 115
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 72/96 (75%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
I+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD + +I+++I
Sbjct: 6 IEKNFVISDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDQATVQKIRDAI 65
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ ++ TV+++NY K FWNL H+ P+R+ G++
Sbjct: 66 RDQREITVQLINYTKSGKKFWNLFHLQPMRDQKGEL 101
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 69/102 (67%), Gaps = 1/102 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+F I+DP + +PI+FAS FL+++ +SR EI+GRN R QGP T++ T+ +IR+AIR++
Sbjct: 9 NFVISDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDQATVQKIRDAIRDQ 68
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R I V L+NY K G FW LF + + + G +F+ VQ+
Sbjct: 69 REITVQLINYTKSGKKFWNLFHLQPM-RDQKGELQYFIGVQL 109
>gi|148557956|ref|YP_001257576.1| sensory box protein [Brucella ovis ATCC 25840]
gi|148369241|gb|ABQ62113.1| sensory box protein [Brucella ovis ATCC 25840]
Length = 463
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 67/92 (72%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + IK +I E+
Sbjct: 8 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVCAIKSAIAAEK 67
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ I+NY+K +FWN LHISP+ NA+G++
Sbjct: 68 PIDIDIINYKKSGEAFWNRLHISPVHNANGRL 99
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 10 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVCAIKSAIAAEKPI 69
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V +GR HFV+ Q+ +
Sbjct: 70 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQLDV 109
>gi|260760079|ref|ZP_05872427.1| signal transduction histidine kinase [Brucella abortus bv. 4 str.
292]
gi|260670397|gb|EEX57337.1| signal transduction histidine kinase [Brucella abortus bv. 4 str.
292]
Length = 179
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 67/91 (73%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + IK +I E+
Sbjct: 35 LITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKP 94
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ I+NY+K +FWN LHISP+ NA+G++
Sbjct: 95 IDIDIINYKKSGEAFWNRLHISPVHNANGRL 125
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 36 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 95
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+++++NYKK G FW +S V +GR HFV+ Q+
Sbjct: 96 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQL 133
>gi|390980872|pdb|3T50|A Chain A, X-Ray Structure Of The Lov Domain From The Lov-Hk Sensory
Protein From Brucella Abortus (Dark State).
gi|390980873|pdb|3T50|B Chain B, X-Ray Structure Of The Lov Domain From The Lov-Hk Sensory
Protein From Brucella Abortus (Dark State)
Length = 128
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 67/91 (73%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + IK +I E+
Sbjct: 11 LITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKP 70
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ I+NY+K +FWN LHISP+ NA+G++
Sbjct: 71 IDIDIINYKKSGEAFWNRLHISPVHNANGRL 101
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 12 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 71
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+++++NYKK G FW +S V +GR HFV+ Q+
Sbjct: 72 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQL 109
>gi|306845922|ref|ZP_07478489.1| PAS domain S-box-containing protein [Brucella inopinata BO1]
gi|306273557|gb|EFM55402.1| PAS domain S-box-containing protein [Brucella inopinata BO1]
Length = 489
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 66/92 (71%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + IK +I E+
Sbjct: 34 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEK 93
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ I+NY+K +FWN LHISP+ NA G++
Sbjct: 94 PIDIDIINYKKSGEAFWNRLHISPVHNADGRL 125
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 36 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 95
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V DGR HFV+ Q+ +
Sbjct: 96 DIDIINYKKSGEAFWNRLHISPVHNA-DGRLQHFVSSQLDV 135
>gi|384251337|gb|EIE24815.1| hypothetical protein COCSUDRAFT_46955 [Coccomyxa subellipsoidea
C-169]
Length = 1327
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 72/101 (71%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + + + DP+LPD P++Y ++AF ++TGY R E++G+NCRFL G DTD + +I
Sbjct: 379 ALSNLNEGITIADPNLPDCPLMYVNEAFCRMTGYAREEIIGRNCRFLQGPDTDPASVVRI 438
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+E+++ ++ ++ ILNY+K+ FWNLL + P+ NA+G V+
Sbjct: 439 REALEQKREVSLEILNYKKNGDKFWNLLSMMPVCNAAGAVV 479
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 71/119 (59%), Gaps = 4/119 (3%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL L + TI DP++ P+++ + F +M+G++R EIIGRN R QGP T+ +++ I
Sbjct: 379 ALSNLNEGITIADPNLPDCPLMYVNEAFCRMTGYAREEIIGRNCRFLQGPDTDPASVVRI 438
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI---VSRKH 138
REA+ ++R + + +LNYKK+G FW L M V G F+ VQ I + RKH
Sbjct: 439 REALEQKREVSLEILNYKKNGDKFWNLLSMMPVCNAA-GAVVSFIGVQSDITELIRRKH 496
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 66/111 (59%), Gaps = 11/111 (9%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L ++ ++ D PD P++Y + F+KL GY EVVG+N RF+ G D+D + ++
Sbjct: 243 ALAATSEATLITDAAQPDNPIIYVNSGFIKLLGYTMGEVVGRNARFMQGPDSDPEAVAEL 302
Query: 306 KESIQTEQACTVRILNYRKDKSSFWN-----------LLHISPIRNASGKV 345
+++++T +A V ++N RKD S FWN + ++PI+++SG V
Sbjct: 303 RDAVRTGRATVVELINLRKDGSRFWNQARPLLRFCPGFVSMTPIKDSSGFV 353
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 10/126 (7%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+AL ++ ITD + +PI++ + GF+K+ G++ E++GRN R QGP ++ + E
Sbjct: 242 KALAATSEATLITDAAQPDNPIIYVNSGFIKLLGYTMGEVVGRNARFMQGPDSDPEAVAE 301
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVF----------GKEDGRATHFVAVQV 131
+R+A+R R V L+N +KDG+ FW + L F G T+FV V
Sbjct: 302 LRDAVRTGRATVVELINLRKDGSRFWNQARPLLRFCPGFVSMTPIKDSSGFVTNFVGVLQ 361
Query: 132 PIVSRK 137
+ RK
Sbjct: 362 DVTERK 367
Score = 38.1 bits (87), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%)
Query: 266 MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKD 325
+++ + F +LTGY++ E VG+ FL D DT + + + A +V +L K
Sbjct: 137 LMHTNQGFARLTGYEQIEAVGRPWTFLLADDADTALAGSVWAAFAAGAAVSVDLLLRTKG 196
Query: 326 KSSFWNLLHISPI 338
+ W + +P+
Sbjct: 197 DTRLWGQISFTPV 209
>gi|289661717|ref|ZP_06483298.1| histidine kinase [Xanthomonas campestris pv. vasculorum NCPPB 702]
Length = 541
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 71/115 (61%)
Query: 232 SLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRF 291
SLP S + ++ + + DPHLPD P+V+A+ AFL++TGY +EV+G NCRF
Sbjct: 19 SLPVEKHRSDIFFAAVETTRMPMTVTDPHLPDNPIVFANRAFLEMTGYSADEVIGNNCRF 78
Query: 292 LNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
L G +TD + ++ESI+ +LNYRKD SSFWN L +SP+ + G ++
Sbjct: 79 LQGPETDPASISDVRESIEARSEFATEVLNYRKDGSSFWNALFVSPVFDDKGNLV 133
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G+S E+IG N R QGP T+ +I ++RE+I
Sbjct: 41 MTVTDPHLPDNPIVFANRAFLEMTGYSADEVIGNNCRFLQGPETDPASISDVRESIEARS 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G +F Q+ + R+ ++
Sbjct: 101 EFATEVLNYRKDGSSFWNALFVSPVF-DDKGNLVYFFGSQLDVSRRRDAEDA 151
>gi|289668671|ref|ZP_06489746.1| histidine kinase [Xanthomonas campestris pv. musacearum NCPPB 4381]
Length = 541
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 71/115 (61%)
Query: 232 SLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRF 291
SLP S + ++ + + DPHLPD P+V+A+ AFL++TGY +EV+G NCRF
Sbjct: 19 SLPVEKHRSDIFFAAVETTRMPMTVTDPHLPDNPIVFANRAFLEMTGYSADEVIGNNCRF 78
Query: 292 LNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
L G +TD + ++ESI+ +LNYRKD SSFWN L +SP+ + G ++
Sbjct: 79 LQGPETDPASISDVRESIEARSEFATEVLNYRKDGSSFWNALFVSPVFDDKGNLV 133
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G+S E+IG N R QGP T+ +I ++RE+I
Sbjct: 41 MTVTDPHLPDNPIVFANRAFLEMTGYSADEVIGNNCRFLQGPETDPASISDVRESIEARS 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G ++ Q+ + R+ ++
Sbjct: 101 EFATEVLNYRKDGSSFWNALFVSPVF-DDKGNLVYYFGSQLDVSRRRDAEDA 151
>gi|253750646|gb|ACT35019.1| phytochrome 3 [Pronephrium lakhimpurense]
Length = 1438
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 68/103 (66%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI SFV+ DP LPD P+++ASD FL+LTGY R EV+G+NCR L G DTD +
Sbjct: 930 LATTLERIGHSFVITDPRLPDNPIIFASDQFLELTGYSREEVLGENCRLLQGQDTDPKAV 989
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
I+++++ + TV +LNY + FWNL H+ +R+ G +
Sbjct: 990 QLIRDAVEGGRDVTVHLLNYTRSGRPFWNLFHLQAMRDKKGNL 1032
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 67/98 (68%), Gaps = 2/98 (2%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ SFV++D PD+P+++AS F LTGY EV+G NCRFL G +T+ + I+E++
Sbjct: 670 QTSFVVVDALKPDLPIIFASTGFFNLTGYTSREVIGGNCRFLQGPETNPEDIASIREALV 729
Query: 311 TEQACTV--RILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ T R+LNYRKD SSFWNLL I+PI++ SG ++
Sbjct: 730 PQGGGTFCGRLLNYRKDGSSFWNLLTIAPIKDDSGTIV 767
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + SF ITDP + +PI+FAS FL+++G+SR E++G N R+ QG T+ + + IR
Sbjct: 934 LERIGHSFVITDPRLPDNPIIFASDQFLELTGYSREEVLGENCRLLQGQDTDPKAVQLIR 993
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
+A+ R + V+LLNY + G PFW LF + + K+ G +F+ VQ
Sbjct: 994 DAVEGGRDVTVHLLNYTRSGRPFWNLFHLQAMRDKK-GNLQYFIGVQ 1039
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 15/130 (11%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SF + D PI+FAS GF ++G++ E+IG N R QGP TN I IREA+ +
Sbjct: 672 SFVVVDALKPDLPIIFASTGFFNLTGYTSREVIGGNCRFLQGPETNPEDIASIREALVPQ 731
Query: 90 RPIEV--NLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIVSRKHMRNSGMSY 146
LLNY+KDG+ FW L ++ + K+D G + VQ+ + Y
Sbjct: 732 GGGTFCGRLLNYRKDGSSFWNLLTIAPI--KDDSGTIVKLIGVQLEV----------SKY 779
Query: 147 SEDGGGSRLR 156
+E +RLR
Sbjct: 780 TEGSRANRLR 789
>gi|84624645|ref|YP_452017.1| histidine kinase [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|84368585|dbj|BAE69743.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 540
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 71/115 (61%)
Query: 232 SLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRF 291
SLP S + ++ + + DPHLPD P+V+A+ AFL++TGY EV+G NCRF
Sbjct: 19 SLPVEKHRSDIFFAAVETTRMPMTVTDPHLPDNPIVFANRAFLEMTGYSAEEVIGNNCRF 78
Query: 292 LNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
L G +TD + +++SI+T +LNYRKD SSFWN L +SP+ + G ++
Sbjct: 79 LQGPETDPASISDVRQSIETRSEFATEVLNYRKDGSSFWNALFVSPVFDDHGNLV 133
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G+S E+IG N R QGP T+ +I ++R++I
Sbjct: 41 MTVTDPHLPDNPIVFANRAFLEMTGYSAEEVIGNNCRFLQGPETDPASISDVRQSIETRS 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G +F Q+ + R+ ++
Sbjct: 101 EFATEVLNYRKDGSSFWNALFVSPVF-DDHGNLVYFFGSQLDVSRRRDAEDA 151
>gi|58582770|ref|YP_201786.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae KACC 10331]
Length = 428
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 71/115 (61%)
Query: 232 SLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRF 291
SLP S + ++ + + DPHLPD P+V+A+ AFL++TGY EV+G NCRF
Sbjct: 19 SLPVEKHRSDIFFAAVETTRMPMTVTDPHLPDNPIVFANRAFLEMTGYSAEEVIGNNCRF 78
Query: 292 LNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
L G +TD + +++SI+T +LNYRKD SSFWN L +SP+ + G ++
Sbjct: 79 LQGPETDPASISDVRQSIETRSEFATEVLNYRKDGSSFWNALFVSPVFDDHGNLV 133
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 65/107 (60%), Gaps = 1/107 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G+S E+IG N R QGP T+ +I ++R++I
Sbjct: 41 MTVTDPHLPDNPIVFANRAFLEMTGYSAEEVIGNNCRFLQGPETDPASISDVRQSIETRS 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S VF + G +F Q+ + R+
Sbjct: 101 EFATEVLNYRKDGSSFWNALFVSPVF-DDHGNLVYFFGSQLDVSRRR 146
>gi|390991282|ref|ZP_10261551.1| blue-light-activated protein [Xanthomonas axonopodis pv. punicae
str. LMG 859]
gi|372554009|emb|CCF68526.1| blue-light-activated protein [Xanthomonas axonopodis pv. punicae
str. LMG 859]
Length = 540
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 70/107 (65%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + + DPHLPD P+V+A+ AFL++TGY +EV+G NCRFL G +TD
Sbjct: 27 SDIFFAAVETTRMPMTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRFLQGPETDP 86
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ ++ESI++ + +LNYRKD SSFWN L ISP+ + G ++
Sbjct: 87 ASISDVRESIESRREFATEVLNYRKDGSSFWNALFISPVFDDKGNLV 133
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 68/112 (60%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G++ E+IG N R QGP T+ +I ++RE+I R
Sbjct: 41 MTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRFLQGPETDPASISDVRESIESRR 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G +F Q+ + R+ ++
Sbjct: 101 EFATEVLNYRKDGSSFWNALFISPVF-DDKGNLVYFFGSQLDVSRRRDAEDA 151
>gi|380512305|ref|ZP_09855712.1| histidine kinase [Xanthomonas sacchari NCPPB 4393]
Length = 544
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 70/107 (65%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + ++ DP PD P+++ + AFL++TGY R+E++G NCRFL G DTD
Sbjct: 29 SDIFFAAVQTTRMPMIVTDPRQPDNPIIFVNRAFLEMTGYSRDELIGNNCRFLQGPDTDR 88
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ ++E+I T V ILNYRKD SSFWN L+ISP+ + G+++
Sbjct: 89 ETVRNVREAIATHDEVAVEILNYRKDGSSFWNALYISPVYDDRGELV 135
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP +PI+F +R FL+M+G+SR E+IG N R QGP T+R T+ +REAI +
Sbjct: 45 VTDPRQPDNPIIFVNRAFLEMTGYSRDELIGNNCRFLQGPDTDRETVRNVREAIATHDEV 104
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
V +LNY+KDG+ FW +S V+ + G +F Q+ + R+ ++
Sbjct: 105 AVEILNYRKDGSSFWNALYISPVY-DDRGELVYFFGSQLDVSRRRDAEDA 153
>gi|186477108|ref|YP_001858578.1| histidine kinase [Burkholderia phymatum STM815]
gi|184193567|gb|ACC71532.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum
STM815]
Length = 533
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 69/104 (66%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + V+ DPHLPD P+++A+ AFL++TGY+ E++G NCRFL G +TD +
Sbjct: 25 FFAAVSTTRMPMVVTDPHLPDHPVIFANHAFLRMTGYELTEIIGSNCRFLQGPETDRATI 84
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+++ ++ + ILNYRKD S+FWN L ISP+ N G+++
Sbjct: 85 DEVRAAVADRRELATEILNYRKDGSTFWNALFISPVFNEQGELV 128
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+TDP + HP++FA+ FL+M+G+ EIIG N R QGP T+R TI E+R A+ + R
Sbjct: 36 MVVTDPHLPDHPVIFANHAFLRMTGYELTEIIGSNCRFLQGPETDRATIDEVRAAVADRR 95
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+ +LNY+KDG+ FW +S VF E G +F Q+ + R+ ++
Sbjct: 96 ELATEILNYRKDGSTFWNALFISPVF-NEQGELVYFFGSQLDVSRRRDAEDA 146
>gi|19570333|dbj|BAA36192.2| PHY3 [Adiantum capillus-veneris]
Length = 1465
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 71/103 (68%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI +SFV+ DP LPD P+++ASD FL+LT Y R EV+G NCRFL G TD +
Sbjct: 920 LATTLERIGKSFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNNCRFLQGRGTDRKAV 979
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
I+++++ ++ TV++LNY K +FWNL H+ +R+ +G V
Sbjct: 980 QLIRDAVKEQRDVTVQVLNYTKGGRAFWNLFHLQVMRDENGDV 1022
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI-QT 311
SF+++D PD P++YAS F LTGY EV+G NCRFL G DT+ + I+E++ Q
Sbjct: 676 SFIVVDALKPDFPIIYASTGFFNLTGYTSREVIGGNCRFLQGPDTNPADVASIREALAQG 735
Query: 312 EQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
R+LNYRKD SSFWNLL I+PI++ G ++
Sbjct: 736 TGTFCGRLLNYRKDGSSFWNLLTIAPIKDDLGSIV 770
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + SF ITDP + +PI+FAS FL+++ ++R E++G N R QG T+R+ + IR
Sbjct: 924 LERIGKSFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNNCRFLQGRGTDRKAVQLIR 983
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+A++E+R + V +LNY K G FW LF + V E+G +F+ VQ +V+ +
Sbjct: 984 DAVKEQRDVTVQVLNYTKGGRAFWNLFHLQ-VMRDENGDVQYFIGVQQEMVAPR 1036
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+SF + D PI++AS GF ++G++ E+IG N R QGP TN + IREA+ +
Sbjct: 675 NSFIVVDALKPDFPIIYASTGFFNLTGYTSREVIGGNCRFLQGPDTNPADVASIREALAQ 734
Query: 89 ERPIEVN-LLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI------VSRKHMR 140
LLNY+KDG+ FW L ++ + K+D G + VQ+ + + + R
Sbjct: 735 GTGTFCGRLLNYRKDGSSFWNLLTIAPI--KDDLGSIVKLIGVQLEVSKYTEGIRANNRR 792
Query: 141 NSGMSYS 147
+GM S
Sbjct: 793 PNGMPQS 799
>gi|306838998|ref|ZP_07471819.1| PAS domain S-box-containing protein [Brucella sp. NF 2653]
gi|306405904|gb|EFM62162.1| PAS domain S-box-containing protein [Brucella sp. NF 2653]
Length = 489
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 66/92 (71%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ +PHLPD P+V+A+ AFL+LTGY+ +EV+G+NCRFL G TD + IK +I E+
Sbjct: 34 MLITNPHLPDNPIVFANPAFLRLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEK 93
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ I+NY+K +FWN LHISP+ NA G++
Sbjct: 94 PIDIDIINYKKSGEAFWNRLHISPVHNADGRL 125
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FL+++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 36 ITNPHLPDNPIVFANPAFLRLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 95
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V DGR HFV+ Q+ +
Sbjct: 96 DIDIINYKKSGEAFWNRLHISPVHNA-DGRLQHFVSSQLDV 135
>gi|381170919|ref|ZP_09880071.1| Histidine kinase [Xanthomonas citri pv. mangiferaeindicae LMG 941]
gi|380688642|emb|CCG36558.1| Histidine kinase [Xanthomonas citri pv. mangiferaeindicae LMG 941]
Length = 502
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 65/93 (69%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ DPHLPD P+V+A+ AFL++TGY +EV+G NCRFL G +TD + ++ESI++ +
Sbjct: 3 MTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRFLQGPETDPASISDVRESIESRR 62
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+LNYRKD SSFWN L ISP+ + G ++
Sbjct: 63 EFATEVLNYRKDGSSFWNALFISPVFDDKGNLV 95
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 68/112 (60%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G++ E+IG N R QGP T+ +I ++RE+I R
Sbjct: 3 MTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRFLQGPETDPASISDVRESIESRR 62
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G +F Q+ + R+ ++
Sbjct: 63 EFATEVLNYRKDGSSFWNALFISPVF-DDKGNLVYFFGSQLDVSRRRDAEDA 113
>gi|387766385|pdb|4EES|A Chain A, Crystal Structure Of Ilov
gi|387766386|pdb|4EET|B Chain B, Crystal Structure Of Ilov
gi|387766387|pdb|4EET|D Chain D, Crystal Structure Of Ilov
Length = 115
Score = 108 bits (269), Expect = 4e-21, Method: Composition-based stats.
Identities = 43/96 (44%), Positives = 71/96 (73%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
I+++FV+ DP LPD P+++ASD FL+LT Y R E++G+N RFL G +TD + +I+++I
Sbjct: 6 IEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAI 65
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ ++ TV+++NY K FWNLLH+ P+R+ G++
Sbjct: 66 RDQRETTVQLINYTKSGKKFWNLLHLQPVRDQKGEL 101
Score = 102 bits (253), Expect = 4e-19, Method: Composition-based stats.
Identities = 46/102 (45%), Positives = 68/102 (66%), Gaps = 1/102 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+F ITDP + +PI+FAS GFL+++ +SR EI+GRN R QGP T++ T+ +IR+AIR++
Sbjct: 9 NFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQ 68
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R V L+NY K G FW L + V + G +F+ VQ+
Sbjct: 69 RETTVQLINYTKSGKKFWNLLHLQPV-RDQKGELQYFIGVQL 109
>gi|265985444|ref|ZP_06098179.1| signal transduction histidine kinase [Brucella sp. 83/13]
gi|264664036|gb|EEZ34297.1| signal transduction histidine kinase [Brucella sp. 83/13]
Length = 456
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 66/92 (71%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ +PHLPD P+V+A+ AFL+LTGY+ +EV+G+NCRFL G TD + IK +I E+
Sbjct: 1 MLITNPHLPDNPIVFANPAFLRLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEK 60
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ I+NY+K +FWN LHISP+ NA G++
Sbjct: 61 PIDIDIINYKKSGEAFWNRLHISPVHNADGRL 92
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVFA+ FL+++G+ E++GRN R QG T+ + I+ AI E+PI
Sbjct: 3 ITNPHLPDNPIVFANPAFLRLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 62
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++++NYKK G FW +S V DGR HFV+ Q+ +
Sbjct: 63 DIDIINYKKSGEAFWNRLHISPVHNA-DGRLQHFVSSQLDV 102
>gi|34224025|gb|AAQ63177.1| phototropin-like protein [Pisum sativum]
Length = 468
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 73/112 (65%)
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G+ +S L +L +Q+FV+ D PD P++YAS F +TGY EV+G+NCR + G
Sbjct: 147 GIPRVSEDLRDALSAFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVIGRNCRSMQG 206
Query: 295 VDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
DTD + +I+E++ + R+LNY+KD ++FWNLL I+PI++ GK+L
Sbjct: 207 ADTDPNDVAKIREAVAAGTSYCGRLLNYKKDGTTFWNLLTIAPIKDEHGKIL 258
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 7/134 (5%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL +F ++D + +PI++AS GF M+G++ E+IGRN R QG T+ +
Sbjct: 155 LRDALSAFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVIGRNCRSMQGADTDPNDV 214
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI------ 133
+IREA+ LLNYKKDGT FW L ++ + E G+ + +QV +
Sbjct: 215 AKIREAVAAGTSYCGRLLNYKKDGTTFWNLLTIAPI-KDEHGKILKLIGMQVEVSKHTEG 273
Query: 134 VSRKHMRNSGMSYS 147
K +R +G+ S
Sbjct: 274 TKEKMLRPNGLPES 287
>gi|226374632|gb|ACO52468.1| neochrome [Allantodia dilatata]
Length = 1425
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 70/103 (67%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI SFV+ DP LPD P+++ASD FL+LT Y R +V+G+NCRFL G DTD +
Sbjct: 917 LATTLERIGHSFVITDPRLPDNPIIFASDQFLELTEYSREDVLGENCRFLQGRDTDRKAV 976
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
I+++++ + TV++LNY + + FWNL H+ +R+ G +
Sbjct: 977 QLIRDAVKEGRDVTVQLLNYTRSRRPFWNLFHLQAMRDKKGNL 1019
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 66/98 (67%), Gaps = 2/98 (2%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ SFV++D PD+P+++AS F LTG EV+G NCRFL G DTD + I++++
Sbjct: 657 QTSFVVVDALKPDLPIIFASTGFFNLTGCTSREVIGGNCRFLQGPDTDPEDIASIRDAVV 716
Query: 311 TEQACTV--RILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ T R+LNYRKD S+FWNLL I+PI++ SG ++
Sbjct: 717 PQGTGTFCGRLLNYRKDGSNFWNLLTIAPIKDDSGTIV 754
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + SF ITDP + +PI+FAS FL+++ +SR +++G N R QG T+R+ + IR
Sbjct: 921 LERIGHSFVITDPRLPDNPIIFASDQFLELTEYSREDVLGENCRFLQGRDTDRKAVQLIR 980
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
+A++E R + V LLNY + PFW LF + + K+ G +F+ VQ
Sbjct: 981 DAVKEGRDVTVQLLNYTRSRRPFWNLFHLQAMRDKK-GNLQYFIGVQ 1026
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 66/130 (50%), Gaps = 15/130 (11%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SF + D PI+FAS GF ++G + E+IG N R QGP T+ I IR+A+ +
Sbjct: 659 SFVVVDALKPDLPIIFASTGFFNLTGCTSREVIGGNCRFLQGPDTDPEDIASIRDAVVPQ 718
Query: 90 RPIEV--NLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIVSRKHMRNSGMSY 146
LLNY+KDG+ FW L ++ + K+D G F+ VQ+ + Y
Sbjct: 719 GTGTFCGRLLNYRKDGSNFWNLLTIAPI--KDDSGTIVKFIGVQLEV----------SKY 766
Query: 147 SEDGGGSRLR 156
+E +RLR
Sbjct: 767 TEGSRANRLR 776
>gi|27807561|dbj|BAC55265.1| phytochrome 3 [Dryopteris filix-mas]
Length = 686
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 69/103 (66%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI SFV+ DP LPD P+++ASD FL+LT Y R EV+G+NCRFL G DTD +
Sbjct: 489 LATTLERIGHSFVITDPRLPDNPIIFASDQFLELTEYSREEVLGENCRFLQGRDTDLKAV 548
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
I+++++ + TV++LNY + FWNL H+ +R+ G +
Sbjct: 549 QLIRDAVKEGRDITVQLLNYTRGGRPFWNLFHLQAMRDKKGNL 591
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 66/98 (67%), Gaps = 2/98 (2%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ SFV++D PD+P+++AS F LTGY EV+G NCRFL G DT+ + I++++
Sbjct: 229 QTSFVVVDALKPDLPIIFASTGFFNLTGYTSREVIGGNCRFLQGPDTNPEDVASIRDAVV 288
Query: 311 TEQACTV--RILNYRKDKSSFWNLLHISPIRNASGKVL 346
T R+LNYRKD S+FWNLL I+PI++ +G ++
Sbjct: 289 PRGTGTFCGRLLNYRKDGSNFWNLLTIAPIKDDTGTIV 326
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + SF ITDP + +PI+FAS FL+++ +SR E++G N R QG T+ + + IR
Sbjct: 493 LERIGHSFVITDPRLPDNPIIFASDQFLELTEYSREEVLGENCRFLQGRDTDLKAVQLIR 552
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
+A++E R I V LLNY + G PFW LF + + K+ G +F+ VQ
Sbjct: 553 DAVKEGRDITVQLLNYTRGGRPFWNLFHLQAMRDKK-GNLQYFIGVQ 598
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 15/130 (11%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI--R 87
SF + D PI+FAS GF ++G++ E+IG N R QGP TN + IR+A+ R
Sbjct: 231 SFVVVDALKPDLPIIFASTGFFNLTGYTSREVIGGNCRFLQGPDTNPEDVASIRDAVVPR 290
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIVSRKHMRNSGMSY 146
LLNY+KDG+ FW L ++ + K+D G V VQ+ + Y
Sbjct: 291 GTGTFCGRLLNYRKDGSNFWNLLTIAPI--KDDTGTIVKLVGVQLEV----------SKY 338
Query: 147 SEDGGGSRLR 156
+E +RLR
Sbjct: 339 TEGSRANRLR 348
>gi|78048310|ref|YP_364485.1| histidine kinase [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|78036740|emb|CAJ24433.1| sensory box histidine kinase/response regulator [Xanthomonas
campestris pv. vesicatoria str. 85-10]
Length = 540
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 68/107 (63%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + + DPHLPD P+V+A+ AFL++TGY +EV+G NCRFL G DTD
Sbjct: 27 SDIFFAAVETTRMPMTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRFLQGPDTDP 86
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ ++ SI++ +LNYRKD SSFWN L ISP+ + G ++
Sbjct: 87 ASISDVRASIESRSEFATEVLNYRKDGSSFWNALFISPVFDDKGNLV 133
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G++ E+IG N R QGP T+ +I ++R +I
Sbjct: 41 MTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRFLQGPDTDPASISDVRASIESRS 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G +F Q+ + R+ ++
Sbjct: 101 EFATEVLNYRKDGSSFWNALFISPVF-DDKGNLVYFFGSQLDVSRRRDAEDA 151
>gi|448441461|ref|ZP_21589124.1| HTR-like protein [Halorubrum saccharovorum DSM 1137]
gi|445688870|gb|ELZ41117.1| HTR-like protein [Halorubrum saccharovorum DSM 1137]
Length = 590
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 66/100 (66%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + DP LPD PMVY +D F+++TGYDR++ VG NCRFL G DTD + ++
Sbjct: 263 ALDEAPVGITITDPDLPDNPMVYVNDRFVEVTGYDRDDAVGVNCRFLQGKDTDEEPVSRL 322
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+E+I E+ +V +LNYRKD + FWN + ++PI + G V
Sbjct: 323 REAIDAEEPESVELLNYRKDGTPFWNRVSVAPILDGDGSV 362
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALDE P TITDP + +P+V+ + F++++G+ R + +G N R QG T+ + +
Sbjct: 263 ALDEAPVGITITDPDLPDNPMVYVNDRFVEVTGYDRDDAVGVNCRFLQGKDTDEEPVSRL 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
REAI E P V LLNY+KDGTPFW ++ + DG + +V Q I + K
Sbjct: 323 REAIDAEEPESVELLNYRKDGTPFWNRVSVAPILDG-DGSVSEWVGFQEDITAFKE 377
>gi|149286424|gb|ABR23227.1| hisactophilin/phototropin PHY3 fusion protein [Expression vector
pNCO-HISACT-ACVLOV2-syn]
Length = 234
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 71/107 (66%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
I S L RI +SFV+ DP LPD P+++ASD FL+LT Y R EV+G NCRFL G TD
Sbjct: 118 IGSGLVPRGERIGKSFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNNCRFLQGRGTD 177
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ I+++++ ++ TV++LNY K +FWNL H+ +R+ +G V
Sbjct: 178 RKAVQLIRDAVKEQRDVTVQVLNYTKGGRAFWNLFHLQVMRDENGDV 224
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Query: 25 DELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84
+ + SF ITDP + +PI+FAS FL+++ ++R E++G N R QG T+R+ + IR+
Sbjct: 127 ERIGKSFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNNCRFLQGRGTDRKAVQLIRD 186
Query: 85 AIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
A++E+R + V +LNY K G FW LF + V E+G +F+ VQ
Sbjct: 187 AVKEQRDVTVQVLNYTKGGRAFWNLFHLQ-VMRDENGDVQYFIGVQ 231
>gi|359783901|ref|ZP_09287108.1| histidine kinase [Pseudomonas psychrotolerans L19]
gi|359368140|gb|EHK68724.1| histidine kinase [Pseudomonas psychrotolerans L19]
Length = 537
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 74/103 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP PD P+++A++AF +TGY +E++G+NCRFL G +TD +V+
Sbjct: 28 FFAAVETTRMPMLVTDPKQPDNPIIFANNAFTDMTGYQVDELLGRNCRFLQGPETDRSVV 87
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
QI+E+++ E+ +V I+NYRKD S+FWN L +SP+ N +G++
Sbjct: 88 GQIREAVEQEREISVEIINYRKDGSTFWNALFVSPVYNDAGEL 130
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP +PI+FA+ F M+G+ E++GRN R QGP T+R + +IREA+ +ER I
Sbjct: 41 VTDPKQPDNPIIFANNAFTDMTGYQVDELLGRNCRFLQGPETDRSVVGQIREAVEQEREI 100
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
V ++NY+KDG+ FW +S V+ + G T++ A Q+ + R+ ++
Sbjct: 101 SVEIINYRKDGSTFWNALFVSPVY-NDAGELTYYFASQLDVSRRRDAEDA 149
>gi|384428356|ref|YP_005637715.1| two-component system sensor-response regulator hybrid protein
[Xanthomonas campestris pv. raphani 756C]
gi|341937458|gb|AEL07597.1| two-component system sensor-response regulator hybrid protein
[Xanthomonas campestris pv. raphani 756C]
Length = 540
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 77/121 (63%)
Query: 226 VCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVV 285
+ G+ +LP S + ++ + + DP+LPD P+V+A+ AFL++TGY +E++
Sbjct: 13 LIGESQTLPVSKHRSDIFFAAVETTRMPMTVTDPYLPDNPIVFANRAFLEMTGYAADEII 72
Query: 286 GQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
G NCRFL G +TD + ++E+I + + +LNYRKD S+FWN L +SP+ + +GK+
Sbjct: 73 GNNCRFLQGPETDRQAVIDVREAIDSRREFATEVLNYRKDGSTFWNALFVSPVFDDTGKL 132
Query: 346 L 346
+
Sbjct: 133 V 133
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 71/112 (63%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G++ EIIG N R QGP T+R+ ++++REAI R
Sbjct: 41 MTVTDPYLPDNPIVFANRAFLEMTGYAADEIIGNNCRFLQGPETDRQAVIDVREAIDSRR 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G+ +F Q+ + R+ ++
Sbjct: 101 EFATEVLNYRKDGSTFWNALFVSPVF-DDTGKLVYFFGSQLDVSRRRDAEDA 151
>gi|285018414|ref|YP_003376125.1| sensory box histidine kinase/response regulator protein
[Xanthomonas albilineans GPE PC73]
gi|283473632|emb|CBA16135.1| putative sensory box histidine kinase/response regulator protein
[Xanthomonas albilineans GPE PC73]
Length = 544
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 71/107 (66%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + ++ DP+ PD P+++ ++AFL++TGY + E++G NCRFL G DTD
Sbjct: 29 SDIFFAAVQTTRMPMIVTDPNQPDNPIIFVNNAFLEMTGYSKEELIGNNCRFLQGPDTDR 88
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ ++++I + V ILNYRKD SSFWN L+ISP+ + GK++
Sbjct: 89 ETVRSVRDAIASHTEVAVEILNYRKDGSSFWNALYISPVYDECGKLV 135
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 68/110 (61%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+F + FL+M+G+S+ E+IG N R QGP T+R T+ +R+AI +
Sbjct: 45 VTDPNQPDNPIIFVNNAFLEMTGYSKEELIGNNCRFLQGPDTDRETVRSVRDAIASHTEV 104
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
V +LNY+KDG+ FW +S V+ E G+ +F Q+ + R+ ++
Sbjct: 105 AVEILNYRKDGSSFWNALYISPVY-DECGKLVYFFGSQLDVSRRRDAEDA 153
>gi|325915148|ref|ZP_08177474.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937]
gi|325538670|gb|EGD10340.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937]
Length = 519
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 69/107 (64%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + + DPHLPD P+V+A+ AFL++TGY +E++G NCRFL G +TD
Sbjct: 6 SDIFFAAVETTRMPMTVTDPHLPDNPIVFANRAFLEMTGYSADEIIGNNCRFLQGPETDP 65
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ ++ESI+ + +LNYRKD SSFWN L +SP+ + G ++
Sbjct: 66 ASVQDVRESIEQRREFATEVLNYRKDGSSFWNALFVSPVFDDQGNLV 112
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 69/112 (61%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G+S EIIG N R QGP T+ ++ ++RE+I + R
Sbjct: 20 MTVTDPHLPDNPIVFANRAFLEMTGYSADEIIGNNCRFLQGPETDPASVQDVRESIEQRR 79
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G +F Q+ + R+ ++
Sbjct: 80 EFATEVLNYRKDGSSFWNALFVSPVF-DDQGNLVYFFGSQLDVSRRRDAEDA 130
>gi|240139889|ref|YP_002964366.1| hybrid histidine kinase with PAS/PAC and response regulator
receiver domains [Methylobacterium extorquens AM1]
gi|240009863|gb|ACS41089.1| putative hybrid histidine kinase with PAS/PAC and response
regulator receiver domains [Methylobacterium extorquens
AM1]
Length = 533
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 69/107 (64%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + V++DP+ D P+V+ + AFL++TGY R+EV+G NCRFL G +TD
Sbjct: 29 SGIFFAAVAMTRMPMVVVDPNQDDHPIVFVNQAFLEMTGYARDEVIGHNCRFLQGPETDP 88
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+++++ + ILNYRKD SSFWN L +SP+ NA+G +L
Sbjct: 89 ATRALVRDAVAARRDVATEILNYRKDGSSFWNALFVSPVYNAAGDLL 135
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+ +P + DP+ HPIVF ++ FL+M+G++R E+IG N R QGP T+ T +
Sbjct: 37 AMTRMP--MVVVDPNQDDHPIVFVNQAFLEMTGYARDEVIGHNCRFLQGPETDPATRALV 94
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R+A+ R + +LNY+KDG+ FW +S V+ G +F Q+ I R+ +S
Sbjct: 95 RDAVAARRDVATEILNYRKDGSSFWNALFVSPVYNAA-GDLLYFFGSQLDITRRRLAEDS 153
>gi|218531393|ref|YP_002422209.1| histidine kinase [Methylobacterium extorquens CM4]
gi|218523696|gb|ACK84281.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium extorquens
CM4]
Length = 533
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 69/107 (64%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + V++DP+ D P+V+ + AFL++TGY R+EV+G NCRFL G +TD
Sbjct: 29 SGIFFAAVAMTRMPMVVVDPNQDDHPIVFVNQAFLEMTGYARDEVIGHNCRFLQGPETDP 88
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+++++ + ILNYRKD SSFWN L +SP+ NA+G +L
Sbjct: 89 ATRALVRDAVAARRDVATEILNYRKDGSSFWNALFVSPVYNAAGDLL 135
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+ +P + DP+ HPIVF ++ FL+M+G++R E+IG N R QGP T+ T +
Sbjct: 37 AMTRMP--MVVVDPNQDDHPIVFVNQAFLEMTGYARDEVIGHNCRFLQGPETDPATRALV 94
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R+A+ R + +LNY+KDG+ FW +S V+ G +F Q+ I R+ +S
Sbjct: 95 RDAVAARRDVATEILNYRKDGSSFWNALFVSPVYNAA-GDLLYFFGSQLDITRRRLAEDS 153
>gi|418058507|ref|ZP_12696479.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium extorquens
DSM 13060]
gi|373567931|gb|EHP93888.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium extorquens
DSM 13060]
Length = 533
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 69/107 (64%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + V++DP+ D P+V+ + AFL++TGY R+EV+G NCRFL G +TD
Sbjct: 29 SGIFFAAVAMTRMPMVVVDPNQDDHPIVFVNQAFLEMTGYARDEVIGHNCRFLQGPETDP 88
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+++++ + ILNYRKD SSFWN L +SP+ NA+G +L
Sbjct: 89 ATRALVRDAVAARRDVATEILNYRKDGSSFWNALFVSPVYNAAGDLL 135
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+ +P + DP+ HPIVF ++ FL+M+G++R E+IG N R QGP T+ T +
Sbjct: 37 AMTRMP--MVVVDPNQDDHPIVFVNQAFLEMTGYARDEVIGHNCRFLQGPETDPATRALV 94
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R+A+ R + +LNY+KDG+ FW +S V+ G +F Q+ I R+ +S
Sbjct: 95 RDAVAARRDVATEILNYRKDGSSFWNALFVSPVYNAA-GDLLYFFGSQLDITRRRLAEDS 153
>gi|384418859|ref|YP_005628219.1| two-component system sensor-response regulator hybrid protein
[Xanthomonas oryzae pv. oryzicola BLS256]
gi|353461772|gb|AEQ96051.1| two-component system sensor-response regulator hybrid protein
[Xanthomonas oryzae pv. oryzicola BLS256]
Length = 502
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 63/93 (67%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ DPHLPD P+V+A+ AFL++TGY EV+G NCRFL G +TD + +++SI+T
Sbjct: 3 MTVTDPHLPDNPIVFANRAFLEMTGYSAEEVIGNNCRFLQGPETDPASISDVRQSIETRS 62
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+LNYRKD SSFWN L +SP+ + G ++
Sbjct: 63 EFATEVLNYRKDGSSFWNALFVSPVFDDQGNLV 95
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G+S E+IG N R QGP T+ +I ++R++I
Sbjct: 3 MTVTDPHLPDNPIVFANRAFLEMTGYSAEEVIGNNCRFLQGPETDPASISDVRQSIETRS 62
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G +F Q+ + R+ ++
Sbjct: 63 EFATEVLNYRKDGSSFWNALFVSPVF-DDQGNLVYFFGSQLDVSRRRDAEDA 113
>gi|390167412|ref|ZP_10219402.1| PAS/PAC sensor hybrid histidine kinase [Sphingobium indicum B90A]
gi|389589962|gb|EIM67968.1| PAS/PAC sensor hybrid histidine kinase [Sphingobium indicum B90A]
Length = 572
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 76/120 (63%), Gaps = 2/120 (1%)
Query: 229 KRCSL--PGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVG 286
KR ++ PG+ + + +L + +L DP D P+V+A+ AFL LTGY+ +EVVG
Sbjct: 42 KRSTVAEPGLDQRGTVFFAALQMTRMPMILTDPRQDDNPIVFANKAFLDLTGYEESEVVG 101
Query: 287 QNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+NCRFL G DTD + ++E++ ++A + ILNYR+D S FWN + ++P+ + G ++
Sbjct: 102 RNCRFLQGTDTDRETVRALREAVAAQEAISTEILNYRRDGSPFWNAVFVAPVYDDDGTLI 161
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP +PIVFA++ FL ++G+ +E++GRN R QG T+R T+ +REA+ + I
Sbjct: 71 LTDPRQDDNPIVFANKAFLDLTGYEESEVVGRNCRFLQGTDTDRETVRALREAVAAQEAI 130
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY++DG+PFW ++ V+ +DG +F A Q+ + R+
Sbjct: 131 STEILNYRRDGSPFWNAVFVAPVY-DDDGTLIYFFASQLDVTRRR 174
>gi|90420418|ref|ZP_01228325.1| sensory box histidine kinase, possible photoreceptor [Aurantimonas
manganoxydans SI85-9A1]
gi|90335146|gb|EAS48899.1| sensory box histidine kinase, possible photoreceptor [Aurantimonas
manganoxydans SI85-9A1]
Length = 389
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 67/95 (70%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ DP PD P+++A+ AF L GYDR+E++G+NCRFL G DTD T + +++++I
Sbjct: 47 RMPMIITDPRQPDNPIIFANKAFQDLIGYDRDEIIGRNCRFLQGPDTDPTEVDRLRQAIA 106
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
++ V++ NYRKD S+FWN L++SP+R G V
Sbjct: 107 RKEPVNVQLRNYRKDGSAFWNSLYVSPVRGEDGDV 141
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP +PI+FA++ F + G+ R EIIGRN R QGP T+ + +R+AI + P+
Sbjct: 52 ITDPRQPDNPIIFANKAFQDLIGYDRDEIIGRNCRFLQGPDTDPTEVDRLRQAIARKEPV 111
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSED 149
V L NY+KDG+ FW +S V G EDG F A Q+ + R + ED
Sbjct: 112 NVQLRNYRKDGSAFWNSLYVSPVRG-EDGDVQFFFASQLDMTERVEAEQALARQKED 167
>gi|359779999|ref|ZP_09283226.1| histidine kinase [Pseudomonas psychrotolerans L19]
gi|359372615|gb|EHK73179.1| histidine kinase [Pseudomonas psychrotolerans L19]
Length = 538
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 73/103 (70%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + + ++ DPH PD P+++A+++FL+ TGY +EV+G+NCRFL G DT +
Sbjct: 30 FFAAVKKTRMPMIVTDPHQPDNPIIFANESFLRTTGYALDEVLGRNCRFLQGPDTRQEHI 89
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+ +I+ ++ C + +LNYRKD S+FWN L ISP+ + +G++
Sbjct: 90 AEIRNAIREQRDCDIELLNYRKDGSTFWNALFISPVLDPAGQL 132
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 68/110 (61%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP +PI+FA+ FL+ +G++ E++GRN R QGP T + I EIR AIRE+R
Sbjct: 43 VTDPHQPDNPIIFANESFLRTTGYALDEVLGRNCRFLQGPDTRQEHIAEIRNAIREQRDC 102
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
++ LLNY+KDG+ FW +S V G+ +F A Q+ + R+ ++
Sbjct: 103 DIELLNYRKDGSTFWNALFISPVLDPA-GQLRYFFASQLDVSRRRDAEDA 151
>gi|188577558|ref|YP_001914487.1| histidine kinase [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188522010|gb|ACD59955.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 507
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 64/96 (66%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ + DPHLPD P+V+A+ AFL++TGY EV+G NCRFL G +TD + +++SI+
Sbjct: 5 RMPMTVTDPHLPDNPIVFANRAFLEMTGYSAEEVIGNNCRFLQGPETDPASISDVRQSIE 64
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
T +LNYRKD SSFWN L +SP+ + G ++
Sbjct: 65 TRSEFATEVLNYRKDGSSFWNALFVSPVFDDHGNLV 100
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G+S E+IG N R QGP T+ +I ++R++I
Sbjct: 8 MTVTDPHLPDNPIVFANRAFLEMTGYSAEEVIGNNCRFLQGPETDPASISDVRQSIETRS 67
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G +F Q+ + R+ ++
Sbjct: 68 EFATEVLNYRKDGSSFWNALFVSPVF-DDHGNLVYFFGSQLDVSRRRDAEDA 118
>gi|21231858|ref|NP_637775.1| histidine kinase [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66768015|ref|YP_242777.1| histidine kinase [Xanthomonas campestris pv. campestris str. 8004]
gi|21113578|gb|AAM41699.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66573347|gb|AAY48757.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
8004]
Length = 540
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 76/121 (62%)
Query: 226 VCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVV 285
+ G+ +LP S + ++ + + DP+LPD P+V+A+ AFL++TGY +E++
Sbjct: 13 LIGESQTLPVSKHRSDIFFAAVETTRMPMTVTDPYLPDNPIVFANRAFLEMTGYAADEII 72
Query: 286 GQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
G NCRFL G +TD + ++E+I + +LNYRKD S+FWN L +SP+ + +GK+
Sbjct: 73 GNNCRFLQGPETDRQAVADVREAIDNRREFATEVLNYRKDGSTFWNALFVSPVFDDTGKL 132
Query: 346 L 346
+
Sbjct: 133 V 133
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G++ EIIG N R QGP T+R+ + ++REAI R
Sbjct: 41 MTVTDPYLPDNPIVFANRAFLEMTGYAADEIIGNNCRFLQGPETDRQAVADVREAIDNRR 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G+ +F Q+ + R+ ++
Sbjct: 101 EFATEVLNYRKDGSTFWNALFVSPVF-DDTGKLVYFFGSQLDVSRRRDAEDA 151
>gi|188991140|ref|YP_001903150.1| histidine kinase [Xanthomonas campestris pv. campestris str. B100]
gi|167732900|emb|CAP51096.1| Sensory box histidine kinase/response regulator [Xanthomonas
campestris pv. campestris]
Length = 540
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 76/121 (62%)
Query: 226 VCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVV 285
+ G+ +LP S + ++ + + DP+LPD P+V+A+ AFL++TGY +E++
Sbjct: 13 LIGESQTLPVSKHRSDIFFAAVETTRMPMTVTDPYLPDNPIVFANRAFLEMTGYAADEII 72
Query: 286 GQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
G NCRFL G +TD + ++E+I + +LNYRKD S+FWN L +SP+ + +GK+
Sbjct: 73 GNNCRFLQGPETDRQAVIDVREAIDNRREFATEVLNYRKDGSTFWNALFVSPVFDDTGKL 132
Query: 346 L 346
+
Sbjct: 133 V 133
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 71/112 (63%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G++ EIIG N R QGP T+R+ ++++REAI R
Sbjct: 41 MTVTDPYLPDNPIVFANRAFLEMTGYAADEIIGNNCRFLQGPETDRQAVIDVREAIDNRR 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G+ +F Q+ + R+ ++
Sbjct: 101 EFATEVLNYRKDGSTFWNALFVSPVF-DDTGKLVYFFGSQLDVSRRRDAEDA 151
>gi|334121164|ref|ZP_08495238.1| PAS/PAC sensor signal transduction histidine kinase [Microcoleus
vaginatus FGP-2]
gi|333455450|gb|EGK84099.1| PAS/PAC sensor signal transduction histidine kinase [Microcoleus
vaginatus FGP-2]
Length = 1113
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 66/100 (66%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + D PD P+VY + AF ++TGYDR+E++GQNCRFL G DTD + QI
Sbjct: 34 ALAATSNGIAIADATRPDKPIVYCNGAFERITGYDRSEIIGQNCRFLQGPDTDGAAVDQI 93
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +++ + C V + NYRKD + FWN L ISP+R++SG V
Sbjct: 94 RVALKEQHDCKVVLKNYRKDGTPFWNELTISPVRDSSGIV 133
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL + I D + PIV+ + F +++G+ R+EIIG+N R QGP T+ + +I
Sbjct: 34 ALAATSNGIAIADATRPDKPIVYCNGAFERITGYDRSEIIGQNCRFLQGPDTDGAAVDQI 93
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R A++E+ +V L NY+KDGTPFW +S V G THF+ VQ I RK +
Sbjct: 94 RVALKEQHDCKVVLKNYRKDGTPFWNELTISPVR-DSSGIVTHFIGVQADITDRKQAEEA 152
>gi|387766384|pdb|4EER|A Chain A, Crystal Structure Of Lov2 Domain Of Arabidopsis Thaliana
Phototropin 2 C426a Mutant
Length = 115
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 71/96 (73%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
I+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+N RFL G +TD + +I+++I
Sbjct: 6 IEKNFVISDPRLPDNPIIFASDSFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAI 65
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ ++ TV+++NY K FWNL H+ P+R+ G++
Sbjct: 66 RDQREITVQLINYTKSGKKFWNLFHLQPMRDQKGEL 101
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 69/102 (67%), Gaps = 1/102 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+F I+DP + +PI+FAS FL+++ +SR EI+GRN R QGP T++ T+ +IR+AIR++
Sbjct: 9 NFVISDPRLPDNPIIFASDSFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQ 68
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R I V L+NY K G FW LF + + + G +F+ VQ+
Sbjct: 69 REITVQLINYTKSGKKFWNLFHLQPM-RDQKGELQYFIGVQL 109
>gi|163851076|ref|YP_001639119.1| histidine kinase [Methylobacterium extorquens PA1]
gi|218529906|ref|YP_002420722.1| histidine kinase [Methylobacterium extorquens CM4]
gi|240138210|ref|YP_002962682.1| sensor hybrid histidine kinase with PAS/PAC and response receiver
regulator receiver domains [Methylobacterium extorquens
AM1]
gi|254560770|ref|YP_003067865.1| sensor hybrid histidine kinase with PAS/PAC and response receiver
regulator receiver domains [Methylobacterium extorquens
DM4]
gi|418059761|ref|ZP_12697700.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium extorquens
DSM 13060]
gi|163662681|gb|ABY30048.1| PAS sensor protein [Methylobacterium extorquens PA1]
gi|218522209|gb|ACK82794.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium extorquens
CM4]
gi|240008179|gb|ACS39405.1| putative sensor hybrid histidine kinase with PAS/PAC and response
receiver regulator receiver domains [Methylobacterium
extorquens AM1]
gi|254268048|emb|CAX23919.1| putative sensor hybrid histidine kinase with PAS/PAC and response
receiver regulator receiver domains [Methylobacterium
extorquens DM4]
gi|373566703|gb|EHP92693.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium extorquens
DSM 13060]
Length = 541
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 69/104 (66%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DPH PD P+++A+ AF+++TGY E++G NCRFL G DTD +
Sbjct: 33 FFAAVETTRMPMIVTDPHQPDNPIIFANRAFVRMTGYSAEELIGSNCRFLQGPDTDRDTV 92
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+++++I+ + ILNYRKD SSFWN L +SP+ N SG ++
Sbjct: 93 SEVRDAIREHREFAAEILNYRKDGSSFWNALFVSPVFNRSGDLV 136
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 68/110 (61%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP +PI+FA+R F++M+G+S E+IG N R QGP T+R T+ E+R+AIRE R
Sbjct: 46 VTDPHQPDNPIIFANRAFVRMTGYSAEELIGSNCRFLQGPDTDRDTVSEVRDAIREHREF 105
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G +F Q+ + R+ S
Sbjct: 106 AAEILNYRKDGSSFWNALFVSPVFNRS-GDLVYFFGSQLDVSRRRDAEES 154
>gi|27807565|dbj|BAC55267.1| phytochrome 3 [Onoclea sensibilis]
Length = 692
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 68/103 (66%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI SFV+ DP LP P+++ASD FL+LT Y R EV+G+NCRFL G DTD +
Sbjct: 495 LATTLERIGHSFVITDPRLPGNPIIFASDQFLELTEYSREEVLGENCRFLQGRDTDRKAV 554
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
I+++++ + TV++LNY K FWNL H+ +R+ G +
Sbjct: 555 QLIRDAVEEGRDVTVQLLNYTKGGRPFWNLFHLQAMRDKKGNL 597
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 67/98 (68%), Gaps = 2/98 (2%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ SFV++D D+P++YAS F LTGY EV+G NCRFL G +T+ V+ I+E++
Sbjct: 234 QTSFVVVDALKLDLPIIYASTGFFNLTGYTSREVIGGNCRFLQGPETNPAVIDSIREALV 293
Query: 311 TEQACTV--RILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ T R+LNYRKD SSFWNLL I+PI++ SG ++
Sbjct: 294 PQGTGTFCGRLLNYRKDGSSFWNLLTIAPIKDDSGTIV 331
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + SF ITDP + G+PI+FAS FL+++ +SR E++G N R QG T+R+ + IR
Sbjct: 499 LERIGHSFVITDPRLPGNPIIFASDQFLELTEYSREEVLGENCRFLQGRDTDRKAVQLIR 558
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
+A+ E R + V LLNY K G PFW LF + + K+ G +F+ VQ
Sbjct: 559 DAVEEGRDVTVQLLNYTKGGRPFWNLFHLQAMRDKK-GNLQYFIGVQ 604
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SF + D PI++AS GF ++G++ E+IG N R QGP TN I IREA+ +
Sbjct: 236 SFVVVDALKLDLPIIYASTGFFNLTGYTSREVIGGNCRFLQGPETNPAVIDSIREALVPQ 295
Query: 90 RPIEV--NLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
LLNY+KDG+ FW L ++ + K+D G + + VQ+ +
Sbjct: 296 GTGTFCGRLLNYRKDGSSFWNLLTIAPI--KDDSGTIVNLIGVQLEV 340
>gi|76800979|ref|YP_325987.1| bacterio-opsin activator [Natronomonas pharaonis DSM 2160]
gi|76556844|emb|CAI48418.1| receiver/sensor/bat box HTH-10 family transcription regulator Bat
(homolog to bacterioopsin activator) [Natronomonas
pharaonis DSM 2160]
Length = 681
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 66/92 (71%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ DPH D P+VY ++AF +LTGY+R+EV+G+NCRFL G DT+ + I++++ +
Sbjct: 159 VVVADPHEEDEPLVYINEAFERLTGYERHEVLGRNCRFLQGEDTNPEAVATIRQAVDDRR 218
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+V +LNYRKD FWN L+I+PIR+ G+V
Sbjct: 219 PVSVELLNYRKDGEPFWNQLNIAPIRDDDGRV 250
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
LDE P + DP P+V+ + F +++G+ R E++GRN R QG TN + IR
Sbjct: 152 LDEAPVGVVVADPHEEDEPLVYINEAFERLTGYERHEVLGRNCRFLQGEDTNPEAVATIR 211
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+A+ + RP+ V LLNY+KDG PFW ++ + +DGR TH V Q I RK +
Sbjct: 212 QAVDDRRPVSVELLNYRKDGEPFWNQLNIAPIR-DDDGRVTHLVGFQTDITERKEV 266
>gi|149186049|ref|ZP_01864363.1| sensory box histidine kinase [Erythrobacter sp. SD-21]
gi|148830080|gb|EDL48517.1| sensory box histidine kinase [Erythrobacter sp. SD-21]
Length = 359
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 70/100 (70%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
++ + + + L DPH D P+V+ ++AF +LTGY R +++G+NCRFL G DTD + +I
Sbjct: 42 AMAQTRMAVCLTDPHQQDDPIVFCNEAFEQLTGYRREDILGRNCRFLQGPDTDQRQIAKI 101
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+E+I E+ V +LNYRKD S+F+N LH+ PI +A G++
Sbjct: 102 REAIAAEEVVVVELLNYRKDGSTFYNTLHLGPIYDAEGRL 141
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
Query: 11 SFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQ 70
SF L +A+ + + +TDP PIVF + F +++G+ R +I+GRN R Q
Sbjct: 30 SFEGASGLLFEQAMAQTRMAVCLTDPHQQDDPIVFCNEAFEQLTGYRREDILGRNCRFLQ 89
Query: 71 GPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
GP T++R I +IREAI E + V LLNY+KDG+ F+ + ++ E GR T+F Q
Sbjct: 90 GPDTDQRQIAKIREAIAAEEVVVVELLNYRKDGSTFYNTLHLGPIYDAE-GRLTYFFGSQ 148
>gi|448278451|gb|AGE44112.1| miniSOG [synthetic construct]
Length = 106
Score = 106 bits (265), Expect = 2e-20, Method: Composition-based stats.
Identities = 43/96 (44%), Positives = 71/96 (73%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+++SFV+ DP LPD P+++ASD FL+LT Y R E++G+N RFL G +TD + +I+++I
Sbjct: 1 MEKSFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNGRFLQGPETDQATVQKIRDAI 60
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ ++ TV+++NY K FWNLLH+ P+R+ G++
Sbjct: 61 RDQREITVQLINYTKSGKKFWNLLHLQPMRDQKGEL 96
Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats.
Identities = 48/105 (45%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
+ SF ITDP + +PI+FAS GFL+++ +SR EI+GRNGR QGP T++ T+ +IR+AI
Sbjct: 1 MEKSFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNGRFLQGPETDQATVQKIRDAI 60
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R++R I V L+NY K G FW L + + + G +F+ VQ+
Sbjct: 61 RDQREITVQLINYTKSGKKFWNLLHLQPM-RDQKGELQYFIGVQL 104
>gi|27807563|dbj|BAC55266.1| phytochrome 3 [Hypolepis punctata]
Length = 657
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 69/103 (66%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI QSFV+ DP LP+ P+++ASD FL+LT Y R EV+G NC FL G DTD +
Sbjct: 462 LATTLERIGQSFVITDPRLPNNPIIFASDQFLELTEYSREEVLGNNCSFLQGRDTDANTV 521
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
I++++ ++ TV++LNY + FWNL H+ +R+ G++
Sbjct: 522 QLIRDAVAEQRDVTVQLLNYTRGGRPFWNLFHLHAMRDEKGEL 564
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ SFV++D PD+P+++AS F LTGY EV+G NCR L G DT+ + I+E++
Sbjct: 219 QTSFVVVDALKPDLPIIFASTGFFNLTGYTSTEVIGANCRLLQGPDTNPEDVASIREALA 278
Query: 311 TEQACTVR-ILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ R +LNYRKD SSFWNLL I+PI++ G ++
Sbjct: 279 QDTGTFCRKLLNYRKDGSSFWNLLTIAPIKDDRGSIV 315
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + SF ITDP + +PI+FAS FL+++ +SR E++G N QG T+ T+ IR
Sbjct: 466 LERIGQSFVITDPRLPNNPIIFASDQFLELTEYSREEVLGNNCSFLQGRDTDANTVQLIR 525
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+A+ E+R + V LLNY + G PFW LF + E G +F+ VQ V+ +
Sbjct: 526 DAVAEQRDVTVQLLNYTRGGRPFWNLFHLH-AMRDEKGELQYFIGVQQETVAPR 578
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 14/129 (10%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SF + D PI+FAS GF ++G++ E+IG N R+ QGP TN + IREA+ ++
Sbjct: 221 SFVVVDALKPDLPIIFASTGFFNLTGYTSTEVIGANCRLLQGPDTNPEDVASIREALAQD 280
Query: 90 RPIEV-NLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIVSRKHMRNSGMSYS 147
LLNY+KDG+ FW L ++ + K+D G + VQ+ + Y+
Sbjct: 281 TGTFCRKLLNYRKDGSSFWNLLTIAPI--KDDRGSIVKLIGVQLEV----------SKYT 328
Query: 148 EDGGGSRLR 156
E +RLR
Sbjct: 329 EGSRANRLR 337
>gi|253750644|gb|ACT35018.1| phytochrome 3 [Plagiogyria distinctissima]
Length = 1435
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 67/103 (65%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI SFV+ DP LPD P+++ASD FL+LT Y R +V+G+NCRFL G DTD +
Sbjct: 927 LATTLERIGHSFVITDPRLPDNPIIFASDQFLELTEYSREDVLGENCRFLQGRDTDLKAV 986
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
I+++++ TV +LNY + FWNL H+ +R+ G +
Sbjct: 987 QLIRDAVKEGHDVTVHLLNYTRSGRPFWNLFHLQAMRDKKGNL 1029
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 66/98 (67%), Gaps = 2/98 (2%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ SFV++D PD+P+++AS F LTGY EV+ NCRFL G DT+ + I+E++
Sbjct: 664 QTSFVVVDALKPDLPIIFASTGFFNLTGYTYREVLAGNCRFLQGPDTNPADVASIREALA 723
Query: 311 TEQACTV--RILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ T R+LNYRKD S+FWNLL I+PI++ SG ++
Sbjct: 724 PQGTGTFCGRLLNYRKDGSNFWNLLTIAPIKDDSGTIV 761
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + SF ITDP + +PI+FAS FL+++ +SR +++G N R QG T+ + + IR
Sbjct: 931 LERIGHSFVITDPRLPDNPIIFASDQFLELTEYSREDVLGENCRFLQGRDTDLKAVQLIR 990
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
+A++E + V+LLNY + G PFW LF + + K+ G +F+ VQ
Sbjct: 991 DAVKEGHDVTVHLLNYTRSGRPFWNLFHLQAMRDKK-GNLQYFIGVQ 1036
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 15/130 (11%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SF + D PI+FAS GF ++G++ E++ N R QGP TN + IREA+ +
Sbjct: 666 SFVVVDALKPDLPIIFASTGFFNLTGYTYREVLAGNCRFLQGPDTNPADVASIREALAPQ 725
Query: 90 RPIEV--NLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIVSRKHMRNSGMSY 146
LLNY+KDG+ FW L ++ + K+D G F+ VQ+ + Y
Sbjct: 726 GTGTFCGRLLNYRKDGSNFWNLLTIAPI--KDDSGTIVKFIGVQLEV----------SKY 773
Query: 147 SEDGGGSRLR 156
+E +RLR
Sbjct: 774 TEGSRANRLR 783
>gi|312195261|ref|YP_004015322.1| PAS/PAC sensor protein [Frankia sp. EuI1c]
gi|311226597|gb|ADP79452.1| putative PAS/PAC sensor protein [Frankia sp. EuI1c]
Length = 628
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL + SFTI DP P+++ + F + +G+ AE +GRN R QGPR++R T ++
Sbjct: 32 ALQSIDVSFTIADPHQPDTPLIWVNDAFTRTTGYPFAEAVGRNCRFLQGPRSDRATAAKL 91
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140
+A+RE RP V LLNY+KDG+ FW ++ VF + DGR THFV VQ + +R R
Sbjct: 92 GDAVRERRPARVELLNYRKDGSTFWNEIVLAPVFDR-DGRLTHFVGVQDDVTARVEAR 148
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 64/100 (64%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L I SF + DPH PD P+++ +DAF + TGY E VG+NCRFL G +D ++
Sbjct: 32 ALQSIDVSFTIADPHQPDTPLIWVNDAFTRTTGYPFAEAVGRNCRFLQGPRSDRATAAKL 91
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
++++ + V +LNYRKD S+FWN + ++P+ + G++
Sbjct: 92 GDAVRERRPARVELLNYRKDGSTFWNEIVLAPVFDRDGRL 131
>gi|335438286|ref|ZP_08561034.1| bacterio-opsin activator [Halorhabdus tiamatea SARL4B]
gi|334892480|gb|EGM30713.1| bacterio-opsin activator [Halorhabdus tiamatea SARL4B]
Length = 677
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 63/88 (71%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTV 317
D +PD P++Y +D+F+++TGYD+ E +G NCRFL G +TD Q++E+++ +++ +
Sbjct: 168 DATVPDKPLIYVNDSFVEMTGYDKEEAIGVNCRFLQGEETDAETTLQLREAVRDQESAAL 227
Query: 318 RILNYRKDKSSFWNLLHISPIRNASGKV 345
+LNYR D S+FWN L ISPIR+ G V
Sbjct: 228 ELLNYRADGSTFWNNLEISPIRDEDGNV 255
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALDE P TI D ++ P+++ + F++M+G+ + E IG N R QG T+ T +++
Sbjct: 156 ALDEAPVGITIGDATVPDKPLIYVNDSFVEMTGYDKEEAIGVNCRFLQGEETDAETTLQL 215
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
REA+R++ + LLNY+ DG+ FW ++S + EDG T+FV Q I RK
Sbjct: 216 REAVRDQESAALELLNYRADGSTFWNNLEISPIR-DEDGNVTNFVGFQQDITERKE 270
>gi|222106570|ref|YP_002547361.1| sensory box histidine kinase [Agrobacterium vitis S4]
gi|221737749|gb|ACM38645.1| sensory box histidine kinase [Agrobacterium vitis S4]
Length = 411
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 70/96 (72%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ DP D P+++A++AF +LTGY ++++G+NCRFL G D+D + QI+++I+
Sbjct: 78 RMPMIITDPRQADNPIIFANNAFCELTGYASDDLIGKNCRFLQGPDSDPKAVLQIRKAIE 137
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
E+ +V ILNYRKD ++FWN L ISP+R+ G+V+
Sbjct: 138 AERDVSVNILNYRKDGTTFWNALFISPVRDIQGEVI 173
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 79/130 (60%), Gaps = 4/130 (3%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP + +PI+FA+ F +++G++ ++IG+N R QGP ++ + +++IR+AI ER +
Sbjct: 83 ITDPRQADNPIIFANNAFCELTGYASDDLIGKNCRFLQGPDSDPKAVLQIRKAIEAERDV 142
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV---PIVSRKHMRNSGMSYSED 149
VN+LNY+KDGT FW +S V + G +F A Q+ + S++ S S +E
Sbjct: 143 SVNILNYRKDGTTFWNALFISPVRDIQ-GEVIYFFASQLDFTDVKSKEVQLASAKSQAEA 201
Query: 150 GGGSRLREIV 159
R +++V
Sbjct: 202 AVAQRTQDLV 211
>gi|346725425|ref|YP_004852094.1| histidine kinase [Xanthomonas axonopodis pv. citrumelo F1]
gi|346650172|gb|AEO42796.1| histidine kinase [Xanthomonas axonopodis pv. citrumelo F1]
Length = 540
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + + DPHLPD P+V+A+ AFL++TGY +EV+G NCRFL G +TD
Sbjct: 27 SDIFFAAVETTRMPMTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRFLQGPETDP 86
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ ++ SI++ +LNYRKD SSFWN L ISP+ + G ++
Sbjct: 87 ASISDVRASIESRSEFATEVLNYRKDGSSFWNALFISPVFDDKGNLV 133
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G++ E+IG N R QGP T+ +I ++R +I
Sbjct: 41 MTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRFLQGPETDPASISDVRASIESRS 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G +F Q+ + R+ ++
Sbjct: 101 EFATEVLNYRKDGSSFWNALFISPVF-DDKGNLVYFFGSQLDVSRRRDAEDA 151
>gi|188582577|ref|YP_001926022.1| histidine kinase [Methylobacterium populi BJ001]
gi|179346075|gb|ACB81487.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
BJ001]
Length = 531
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 69/107 (64%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + V++DP+ D P+V+ + AFL++TGY + EV+G NCRFL G +TD
Sbjct: 29 SDIFFAAVSMTRMPMVVVDPNQNDHPIVFVNQAFLEMTGYAKAEVIGHNCRFLQGPETDP 88
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
Q++ +I+ + ILNYRKD SSFWN L +SP+ NA+G ++
Sbjct: 89 ATRAQVRAAIEQRRDIATEILNYRKDGSSFWNALFVSPVYNAAGDLV 135
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+ DP+ + HPIVF ++ FL+M+G+++AE+IG N R QGP T+ T ++R AI + R
Sbjct: 43 MVVVDPNQNDHPIVFVNQAFLEMTGYAKAEVIGHNCRFLQGPETDPATRAQVRAAIEQRR 102
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
I +LNY+KDG+ FW +S V+ G +F Q+ I R+ +
Sbjct: 103 DIATEILNYRKDGSSFWNALFVSPVYNAA-GDLVYFFGSQLDITRRRQAEEA 153
>gi|325925085|ref|ZP_08186505.1| PAS domain S-box [Xanthomonas perforans 91-118]
gi|325544501|gb|EGD15864.1| PAS domain S-box [Xanthomonas perforans 91-118]
Length = 540
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + + DPHLPD P+V+A+ AFL++TGY +EV+G NCRFL G +TD
Sbjct: 27 SDIFFAAVETTRMPMTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRFLQGPETDP 86
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ ++ SI++ +LNYRKD SSFWN L ISP+ + G ++
Sbjct: 87 ASISDVRASIESRSEFATEVLNYRKDGSSFWNALFISPVFDDKGNLV 133
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+TDP + +PIVFA+R FL+M+G++ E+IG N R QGP T+ +I ++R +I
Sbjct: 41 MTVTDPHLPDNPIVFANRAFLEMTGYAADEVIGNNCRFLQGPETDPASISDVRASIESRS 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G +F Q+ + R+ ++
Sbjct: 101 EFATEVLNYRKDGSSFWNALFISPVF-DDKGNLVYFFGSQLDVSRRRDAEDA 151
>gi|163852555|ref|YP_001640598.1| histidine kinase [Methylobacterium extorquens PA1]
gi|163664160|gb|ABY31527.1| PAS sensor protein [Methylobacterium extorquens PA1]
Length = 533
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 69/107 (64%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + V++DP+ D P+V+ + AFL++TGY R+EV+G NCRFL G +TD
Sbjct: 29 SGIFFAAVEMTRMPMVVVDPNQDDHPIVFVNQAFLEMTGYARDEVIGHNCRFLQGPETDP 88
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+++++ + ILNYRKD SSFWN L +SP+ NA+G +L
Sbjct: 89 ATRALVRDAVAARRDVATEILNYRKDGSSFWNALFVSPVYNAAGDLL 135
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+ DP+ HPIVF ++ FL+M+G++R E+IG N R QGP T+ T +R+A+ R
Sbjct: 43 MVVVDPNQDDHPIVFVNQAFLEMTGYARDEVIGHNCRFLQGPETDPATRALVRDAVAARR 102
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+ +LNY+KDG+ FW +S V+ G +F Q+ I R+ +S
Sbjct: 103 DVATEILNYRKDGSSFWNALFVSPVYNAA-GDLLYFFGSQLDITRRRLAEDS 153
>gi|393723750|ref|ZP_10343677.1| PAS sensor protein [Sphingomonas sp. PAMC 26605]
Length = 368
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 65/95 (68%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ V+ DP PD P+V+ + AF +LTGY R E++G+NCRFL G DTD + +I+E I+
Sbjct: 31 RMPMVITDPAQPDNPIVFCNVAFQRLTGYAREEIIGRNCRFLQGPDTDPARIAEIREGIE 90
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
A V +LNYRKD ++FWN L++SP+R+ G V
Sbjct: 91 AGHAVDVDLLNYRKDGTTFWNALYLSPVRDREGVV 125
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
ITDP+ +PIVF + F +++G++R EIIGRN R QGP T+ I EIRE I
Sbjct: 34 MVITDPAQPDNPIVFCNVAFQRLTGYAREEIIGRNCRFLQGPDTDPARIAEIREGIEAGH 93
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
++V+LLNY+KDGT FW +S V +E G F A Q+ + R +N
Sbjct: 94 AVDVDLLNYRKDGTTFWNALYLSPVRDRE-GVVRFFFASQLDVTDRIEAQN 143
>gi|254562311|ref|YP_003069406.1| hybrid histidine kinase [Methylobacterium extorquens DM4]
gi|254269589|emb|CAX25559.1| putative hybrid histidine kinase with PAS/PAC and response
regulator receiver domains [Methylobacterium extorquens
DM4]
Length = 533
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 69/107 (64%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + V++DP+ D P+V+ + AFL++TGY R+EV+G NCRFL G +TD
Sbjct: 29 SGIFFAAVEMTRMPMVVVDPNQDDHPIVFVNQAFLEMTGYARDEVIGHNCRFLQGPETDP 88
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+++++ + ILNYRKD SSFWN L +SP+ NA+G +L
Sbjct: 89 ATRALVRDAVAARRDVATEILNYRKDGSSFWNALFVSPVYNAAGDLL 135
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+ DP+ HPIVF ++ FL+M+G++R E+IG N R QGP T+ T +R+A+ R
Sbjct: 43 MVVVDPNQDDHPIVFVNQAFLEMTGYARDEVIGHNCRFLQGPETDPATRALVRDAVAARR 102
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+ +LNY+KDG+ FW +S V+ G +F Q+ I R+ +S
Sbjct: 103 DVATEILNYRKDGSSFWNALFVSPVYNAA-GDLLYFFGSQLDITRRRLAEDS 153
>gi|66045936|ref|YP_235777.1| histidine kinase [Pseudomonas syringae pv. syringae B728a]
gi|75501925|sp|Q4ZSY3.1|LOVHK_PSEU2 RecName: Full=Blue-light-activated protein; Includes: RecName:
Full=Blue-light-activated histidine kinase; Includes:
RecName: Full=Response regulator
gi|63256643|gb|AAY37739.1| PAS [Pseudomonas syringae pv. syringae B728a]
Length = 534
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 69/104 (66%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ PD P+++A+ AFL++TGY E++G NCRFL G DTD T +
Sbjct: 24 FFAAVETTRMPMIVTDPNRPDNPIIFANRAFLEMTGYASEEIIGSNCRFLQGPDTDRTAV 83
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
I+++I + ILNYRKD SSFWN L ISP+ N +G+++
Sbjct: 84 QSIRDAIDQRVDISTEILNYRKDGSSFWNALFISPVYNDAGELI 127
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+FA+R FL+M+G++ EIIG N R QGP T+R + IR+AI + I
Sbjct: 37 VTDPNRPDNPIIFANRAFLEMTGYASEEIIGSNCRFLQGPDTDRTAVQSIRDAIDQRVDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+
Sbjct: 97 STEILNYRKDGSSFWNALFISPVY-NDAGELIYFFASQLDISRRR 140
>gi|448463216|ref|ZP_21597994.1| pas domain s-box [Halorubrum kocurii JCM 14978]
gi|445817211|gb|EMA67087.1| pas domain s-box [Halorubrum kocurii JCM 14978]
Length = 607
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 62/93 (66%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + DP LPD PMVY +D F+++TGYDR + VG NCRFL G DTD + ++
Sbjct: 263 ALDEAPVGITITDPSLPDNPMVYVNDRFVEMTGYDREDAVGVNCRFLQGEDTDPETVDRL 322
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
+E+I E+ +V +LNYRKD + FWN + ++PI
Sbjct: 323 REAIDAEEPASVELLNYRKDGAPFWNRVSVAPI 355
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 69/115 (60%), Gaps = 2/115 (1%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALDE P TITDPS+ +P+V+ + F++M+G+ R + +G N R QG T+ T+ +
Sbjct: 263 ALDEAPVGITITDPSLPDNPMVYVNDRFVEMTGYDREDAVGVNCRFLQGEDTDPETVDRL 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
REAI E P V LLNY+KDG PFW ++ + EDG + +V Q I + K
Sbjct: 323 REAIDAEEPASVELLNYRKDGAPFWNRVSVAPIC--EDGSVSEWVGFQEDITAFK 375
>gi|85373423|ref|YP_457485.1| hypothetical protein ELI_02980 [Erythrobacter litoralis HTCC2594]
gi|123409698|sp|Q2NCA3.1|LVHK1_ERYLH RecName: Full=Blue-light-activated histidine kinase 1; AltName:
Full=EL360-LOV-histidine kinase; Short=EL360-LOV-HK
gi|84786506|gb|ABC62688.1| sensory box histidine kinase [Erythrobacter litoralis HTCC2594]
Length = 360
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 60/93 (64%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
+ + DPH PD P+VY + AFL LTGY R E+VG+NCRFL G DTD + +++E I E
Sbjct: 49 AICISDPHQPDCPVVYVNQAFLDLTGYAREEIVGRNCRFLQGADTDPEQVRKLREGIAAE 108
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ V +LNYRKD FWN +H+ PI G +
Sbjct: 109 RYTVVDLLNYRKDGIPFWNAVHVGPIYGEDGTL 141
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ I+DP P+V+ ++ FL ++G++R EI+GRN R QG T+ + ++RE I E
Sbjct: 49 AICISDPHQPDCPVVYVNQAFLDLTGYAREEIVGRNCRFLQGADTDPEQVRKLREGIAAE 108
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
R V+LLNY+KDG PFW + ++G EDG +F Q
Sbjct: 109 RYTVVDLLNYRKDGIPFWNAVHVGPIYG-EDGTLQYFYGSQ 148
>gi|424072283|ref|ZP_17809704.1| sensor y box histidine kinase/response regulator [Pseudomonas
syringae pv. avellanae str. ISPaVe037]
gi|407997937|gb|EKG38366.1| sensor y box histidine kinase/response regulator [Pseudomonas
syringae pv. avellanae str. ISPaVe037]
Length = 534
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 68/104 (65%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ PD P+++A+ AFL++TGY E++G NCRFL G DTD +
Sbjct: 24 FFAAVETTRMPMIVTDPNRPDNPIIFANQAFLEMTGYSSEEIIGSNCRFLQGPDTDRAAV 83
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
I+++I+ + ILNYRKD SSFWN L ISP+ N +G ++
Sbjct: 84 QSIRDAIEERVDISTEILNYRKDGSSFWNALFISPVYNDAGDLI 127
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+FA++ FL+M+G+S EIIG N R QGP T+R + IR+AI E I
Sbjct: 37 VTDPNRPDNPIIFANQAFLEMTGYSSEEIIGSNCRFLQGPDTDRAAVQSIRDAIEERVDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+
Sbjct: 97 STEILNYRKDGSSFWNALFISPVY-NDAGDLIYFFASQLDISRRR 140
>gi|448460091|ref|ZP_21597011.1| HTR-like protein [Halorubrum lipolyticum DSM 21995]
gi|445807809|gb|EMA57890.1| HTR-like protein [Halorubrum lipolyticum DSM 21995]
Length = 620
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 64/100 (64%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + DP L D PMVY +D F+++TGYDR + VG NCRFL G DTD + ++
Sbjct: 263 ALDEAPVGITITDPDLSDNPMVYVNDRFVEVTGYDREDAVGVNCRFLQGEDTDPEPVARL 322
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+E+I E+ +V +LNYRKD + FWN + ++PIR G V
Sbjct: 323 REAIDAEEPESVELLNYRKDGTPFWNRVSVAPIRAGDGSV 362
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALDE P TITDP +S +P+V+ + F++++G+ R + +G N R QG T+ + +
Sbjct: 263 ALDEAPVGITITDPDLSDNPMVYVNDRFVEVTGYDREDAVGVNCRFLQGEDTDPEPVARL 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
REAI E P V LLNY+KDGTPFW ++ + DG + +V Q I + K
Sbjct: 323 REAIDAEEPESVELLNYRKDGTPFWNRVSVAPIRAG-DGSVSEWVGFQEDITAFKE 377
>gi|167647259|ref|YP_001684922.1| hypothetical protein Caul_3297 [Caulobacter sp. K31]
gi|167349689|gb|ABZ72424.1| signal transduction histidine kinase [Caulobacter sp. K31]
Length = 360
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 62/98 (63%)
Query: 249 RIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKES 308
R + V+ D D P+V A+ AFL LTGY EVVG+NCRFL G T + +I+ +
Sbjct: 37 RTRMPMVIADARHGDHPIVLANQAFLDLTGYGAEEVVGRNCRFLQGAGTSDAAIAKIRAA 96
Query: 309 IQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ Q C V ILNYRKD S FWN LH+SP+ + +G++L
Sbjct: 97 VAAGQECDVEILNYRKDGSDFWNQLHLSPVHDEAGQLL 134
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
I D HPIV A++ FL ++G+ E++GRN R QG T+ I +IR A+ +
Sbjct: 42 MVIADARHGDHPIVLANQAFLDLTGYGAEEVVGRNCRFLQGAGTSDAAIAKIRAAVAAGQ 101
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
+V +LNY+KDG+ FW +S V E G+ + A Q + + +R+
Sbjct: 102 ECDVEILNYRKDGSDFWNQLHLSPVH-DEAGQLLYIFASQRDVSDFRKVRD 151
>gi|422672416|ref|ZP_16731780.1| histidine kinase [Pseudomonas syringae pv. aceris str. M302273]
gi|330970154|gb|EGH70220.1| histidine kinase [Pseudomonas syringae pv. aceris str. M302273]
Length = 502
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 65/93 (69%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ DP+ PD P+++A+ AFL++TGY E++G NCRFL G DTD T + I+++I
Sbjct: 3 MIVTDPNRPDNPIIFANRAFLEMTGYASEEIIGSNCRFLQGPDTDRTAVQSIRDAIDQRV 62
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ ILNYRKD SSFWN L ISP+ N +G+++
Sbjct: 63 DISTEILNYRKDGSSFWNALFISPVYNDAGELI 95
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+FA+R FL+M+G++ EIIG N R QGP T+R + IR+AI + I
Sbjct: 5 VTDPNRPDNPIIFANRAFLEMTGYASEEIIGSNCRFLQGPDTDRTAVQSIRDAIDQRVDI 64
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+
Sbjct: 65 STEILNYRKDGSSFWNALFISPVY-NDAGELIYFFASQLDISRRR 108
>gi|457693|emb|CAA82994.1| protein kinase [Mesembryanthemum crystallinum]
Length = 572
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 72/103 (69%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT + R E++ +N RFL G +TD +
Sbjct: 42 LATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEFSRAEILARNRRFLQGPETDPATV 101
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+++I E TV+++NY K FWN+ H+ P+R+ G+V
Sbjct: 102 AKIRDAIDNETDVTVQLINYTKTGKKFWNVFHLQPMRDQKGEV 144
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + +F ITDP + +PI+FAS FL+++ FSRAEI+ RN R QGP T+ T+ +IR
Sbjct: 46 LERIEKNFVITDPRLPDNPIIFASDSFLELTEFSRAEILARNRRFLQGPETDPATVAKIR 105
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+AI E + V L+NY K G FW +F + + ++ G +F+ VQ+
Sbjct: 106 DAIDNETDVTVQLINYTKTGKKFWNVFHLQPMRDQK-GEVQYFIGVQL 152
>gi|289671649|ref|ZP_06492539.1| histidine kinase, partial [Pseudomonas syringae pv. syringae FF5]
Length = 259
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 68/104 (65%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ PD P+++A+ AFL++TGY E++G NCRFL G DTD +
Sbjct: 24 FFAAVETTRMPMIVTDPNRPDNPIIFANQAFLEMTGYASEEIIGSNCRFLQGPDTDRAAV 83
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
I+++I+ + ILNYRKD SSFWN L ISP+ N +G ++
Sbjct: 84 QSIRDAIEERVDISTEILNYRKDGSSFWNALFISPVYNDAGDLI 127
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+FA++ FL+M+G++ EIIG N R QGP T+R + IR+AI E I
Sbjct: 37 VTDPNRPDNPIIFANQAFLEMTGYASEEIIGSNCRFLQGPDTDRAAVQSIRDAIEERVDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+
Sbjct: 97 STEILNYRKDGSSFWNALFISPVY-NDAGDLIYFFASQLDISRRR 140
>gi|422294611|gb|EKU21911.1| hypothetical protein NGA_0015702 [Nannochloropsis gaditana CCMP526]
Length = 228
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 70/105 (66%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
+L +L +Q+FV+ DP LPD P+VYAS FL LTGY ++++G+NCRFL G DTD
Sbjct: 90 TLVKALQTAQQNFVITDPTLPDNPIVYASGGFLSLTGYQMDQILGRNCRFLQGPDTDPAA 149
Query: 302 LYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+ +I+ +V +LNYR D S+FWN I+ +R A G ++
Sbjct: 150 VDKIRRAIEDGTDGSVCLLNYRADGSTFWNQFFIAALRGADGNIV 194
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Query: 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTN 75
YTL +AL +F ITDP++ +PIV+AS GFL ++G+ +I+GRN R QGP T+
Sbjct: 89 YTLV--KALQTAQQNFVITDPTLPDNPIVYASGGFLSLTGYQMDQILGRNCRFLQGPDTD 146
Query: 76 RRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+ +IR AI + V LLNY+ DG+ FW F ++ + G DG ++V VQ +
Sbjct: 147 PAAVDKIRRAIEDGTDGSVCLLNYRADGSTFWNQFFIAALRGA-DGNIVNYVGVQCKV 203
>gi|422631639|ref|ZP_16696822.1| histidine kinase [Pseudomonas syringae pv. pisi str. 1704B]
gi|330941469|gb|EGH44279.1| histidine kinase [Pseudomonas syringae pv. pisi str. 1704B]
Length = 534
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 68/104 (65%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ PD P+++A+ AFL++TGY E++G NCRFL G DTD +
Sbjct: 24 FFAAVETTRMPMIVTDPNRPDNPIIFANQAFLEMTGYASEEIIGSNCRFLQGPDTDRAAV 83
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
I+++I+ + ILNYRKD SSFWN L ISP+ N +G ++
Sbjct: 84 QSIRDAIEERVDISTEILNYRKDGSSFWNALFISPVYNDAGDLI 127
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+FA++ FL+M+G++ EIIG N R QGP T+R + IR+AI E I
Sbjct: 37 VTDPNRPDNPIIFANQAFLEMTGYASEEIIGSNCRFLQGPDTDRAAVQSIRDAIEERVDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+
Sbjct: 97 STEILNYRKDGSSFWNALFISPVY-NDAGDLIYFFASQLDISRRR 140
>gi|440723539|ref|ZP_20903902.1| histidine kinase [Pseudomonas syringae BRIP34876]
gi|440728023|ref|ZP_20908246.1| histidine kinase [Pseudomonas syringae BRIP34881]
gi|443643766|ref|ZP_21127616.1| Signal transduction histidine kinase [Pseudomonas syringae pv.
syringae B64]
gi|440359514|gb|ELP96822.1| histidine kinase [Pseudomonas syringae BRIP34876]
gi|440362552|gb|ELP99739.1| histidine kinase [Pseudomonas syringae BRIP34881]
gi|443283783|gb|ELS42788.1| Signal transduction histidine kinase [Pseudomonas syringae pv.
syringae B64]
Length = 534
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 68/104 (65%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ PD P+++A+ AFL++TGY E++G NCRFL G DTD +
Sbjct: 24 FFAAVETTRMPMIVTDPNRPDNPIIFANQAFLEMTGYASEEIIGSNCRFLQGPDTDRAAV 83
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
I+++I+ + ILNYRKD SSFWN L ISP+ N +G ++
Sbjct: 84 QSIRDAIEERVDISTEILNYRKDGSSFWNALFISPVYNDAGDLI 127
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+FA++ FL+M+G++ EIIG N R QGP T+R + IR+AI E I
Sbjct: 37 VTDPNRPDNPIIFANQAFLEMTGYASEEIIGSNCRFLQGPDTDRAAVQSIRDAIEERVDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+
Sbjct: 97 STEILNYRKDGSSFWNALFISPVY-NDAGDLIYFFASQLDISRRR 140
>gi|302187367|ref|ZP_07264040.1| histidine kinase [Pseudomonas syringae pv. syringae 642]
Length = 534
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 69/104 (66%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + V+ DP+ PD P+++A+ AFL++TGY E++G NCRFL G DTD +
Sbjct: 24 FFAAVETTRMPMVVTDPNRPDNPIIFANRAFLEMTGYSSEEIIGINCRFLQGPDTDRAAV 83
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
I+++I+ + ILNYRKD SSFWN L ISP+ N +G+++
Sbjct: 84 QSIRDAIEERVDISTEILNYRKDGSSFWNALFISPVYNDAGELI 127
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 66/107 (61%), Gaps = 1/107 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+TDP+ +PI+FA+R FL+M+G+S EIIG N R QGP T+R + IR+AI E
Sbjct: 35 MVVTDPNRPDNPIIFANRAFLEMTGYSSEEIIGINCRFLQGPDTDRAAVQSIRDAIEERV 94
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
I +LNY+KDG+ FW +S V+ + G +F A Q+ I R+
Sbjct: 95 DISTEILNYRKDGSSFWNALFISPVY-NDAGELIYFFASQLDISRRR 140
>gi|94494912|ref|ZP_01301493.1| sensor histidine kinase [Sphingomonas sp. SKA58]
gi|94425178|gb|EAT10198.1| sensor histidine kinase [Sphingomonas sp. SKA58]
Length = 570
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 79/120 (65%), Gaps = 2/120 (1%)
Query: 229 KRCSL--PGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVG 286
KR ++ PG+ + + +L + +L DP D P+V+A+ AFL LTGY+ +E+VG
Sbjct: 39 KRSTIAEPGLEQRGTVFFAALQMTRMPMILTDPRQDDNPIVFANKAFLDLTGYEESEIVG 98
Query: 287 QNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+NCRFL G DTD + ++E+++ +A ++ ILNY++D ++FWN + I+P+ + G+++
Sbjct: 99 RNCRFLQGADTDRGAVSDLREAVKHREAISLEILNYKRDGTAFWNAVFIAPVFDDHGELI 158
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP +PIVFA++ FL ++G+ +EI+GRN R QG T+R + ++REA++ I
Sbjct: 68 LTDPRQDDNPIVFANKAFLDLTGYEESEIVGRNCRFLQGADTDRGAVSDLREAVKHREAI 127
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+ +LNYK+DGT FW ++ VF + G +F A Q+ + R+ S
Sbjct: 128 SLEILNYKRDGTAFWNAVFIAPVF-DDHGELIYFFASQLDVTRRRSSEQS 176
>gi|423691124|ref|ZP_17665644.1| blue-light-activated histidine kinase [Pseudomonas fluorescens
SS101]
gi|387999199|gb|EIK60528.1| blue-light-activated histidine kinase [Pseudomonas fluorescens
SS101]
Length = 531
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 66/94 (70%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
+ ++ DP PD P+++A+ AFL LTG++ +EV+G+NCRFL G TD L+Q++ +++
Sbjct: 35 AMIVTDPAEPDNPIIFANQAFLTLTGFELDEVIGRNCRFLQGPQTDKNALHQVQRAVERH 94
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
V +LNYRKD S+FWN L ISP+ N G+++
Sbjct: 95 HEACVEVLNYRKDGSTFWNELFISPLFNERGQLV 128
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ +TDP+ +PI+FA++ FL ++GF E+IGRN R QGP+T++ + +++ A+
Sbjct: 35 AMIVTDPAEPDNPIIFANQAFLTLTGFELDEVIGRNCRFLQGPQTDKNALHQVQRAVERH 94
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
V +LNY+KDG+ FW +S +F E G+ +F A Q+ VSR+H
Sbjct: 95 HEACVEVLNYRKDGSTFWNELFISPLF-NERGQLVYFFASQLD-VSRRH 141
>gi|424067645|ref|ZP_17805101.1| sensor y box histidine kinase/response regulator [Pseudomonas
syringae pv. avellanae str. ISPaVe013]
gi|408000214|gb|EKG40576.1| sensor y box histidine kinase/response regulator [Pseudomonas
syringae pv. avellanae str. ISPaVe013]
Length = 502
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 64/93 (68%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ DP+ PD P+++A+ AFL++TGY E++G NCRFL G DTD + I+++I+
Sbjct: 3 MIVTDPNRPDNPIIFANQAFLEMTGYSSEEIIGSNCRFLQGPDTDRAAVQSIRDAIEERV 62
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ ILNYRKD SSFWN L ISP+ N +G ++
Sbjct: 63 DISTEILNYRKDGSSFWNALFISPVYNDAGDLI 95
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+FA++ FL+M+G+S EIIG N R QGP T+R + IR+AI E I
Sbjct: 5 VTDPNRPDNPIIFANQAFLEMTGYSSEEIIGSNCRFLQGPDTDRAAVQSIRDAIEERVDI 64
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+
Sbjct: 65 STEILNYRKDGSSFWNALFISPVY-NDAGDLIYFFASQLDISRRR 108
>gi|448475322|ref|ZP_21603040.1| HTR-like protein [Halorubrum aidingense JCM 13560]
gi|445816793|gb|EMA66680.1| HTR-like protein [Halorubrum aidingense JCM 13560]
Length = 596
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 65/101 (64%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + DP PD PMVY +D F+++TGYDR + VG NCRFL G DTD + ++
Sbjct: 263 ALDEAPVGITITDPTRPDNPMVYVNDRFVEMTGYDREDAVGVNCRFLQGPDTDEEPVERL 322
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ESI + +V +LNYR+D + FWN + ++PIR+ G+ +
Sbjct: 323 RESIAAAEPTSVELLNYRRDGTEFWNRVSVAPIRDDDGRPI 363
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 94/195 (48%), Gaps = 17/195 (8%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALDE P TITDP+ +P+V+ + F++M+G+ R + +G N R QGP T+ + +
Sbjct: 263 ALDEAPVGITITDPTRPDNPMVYVNDRFVEMTGYDREDAVGVNCRFLQGPDTDEEPVERL 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
RE+I P V LLNY++DGT FW ++ + +DGR +V Q I + K R +
Sbjct: 323 RESIAAAEPTSVELLNYRRDGTEFWNRVSVAPIR-DDDGRPIQWVGFQEDISAFKE-REA 380
Query: 143 GMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDLEKR 202
+ + RL ++ D L+ +E+ A+D
Sbjct: 381 ALERQNE----RLDSFA-----------GIVSHDLRNPLNVAQGRVELAREAGAADEHLA 425
Query: 203 KAATAIDNILSVLTH 217
AA A+D I S++ H
Sbjct: 426 AAADALDRIESIVEH 440
>gi|448484317|ref|ZP_21606024.1| HTR-like protein [Halorubrum arcis JCM 13916]
gi|445820092|gb|EMA69921.1| HTR-like protein [Halorubrum arcis JCM 13916]
Length = 596
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 65/100 (65%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + DP D PMVY +D F+++TGYDR E +G NCRFL G DT+ + Q+
Sbjct: 263 ALDEAPVGITITDPAREDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEESVQQL 322
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+E+I E++ +V +LNYRKD + FWN + I+PI +A G V
Sbjct: 323 REAIDAEESTSVELLNYRKDGTEFWNRVSIAPICDADGAV 362
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALDE P TITDP+ +P+V+ + F++M+G+ R E IG N R QGP T ++ ++
Sbjct: 263 ALDEAPVGITITDPAREDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEESVQQL 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
REAI E V LLNY+KDGT FW ++ + DG TH+V Q I + K
Sbjct: 323 REAIDAEESTSVELLNYRKDGTEFWNRVSIAPICDA-DGAVTHWVGFQEDITAFKE 377
>gi|424883969|ref|ZP_18307597.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WU95]
gi|392515630|gb|EIW40363.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WU95]
Length = 367
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 69/95 (72%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ DP D P+++++ AF KLTGY E+VG+NCR L G DTD + + +++++I
Sbjct: 35 RMPMIITDPSQHDNPIIFSNAAFSKLTGYTPEELVGKNCRLLQGPDTDPSAVTKLRKAID 94
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+E + +V +LNYRKD S+FWN L++SP R++SGKV
Sbjct: 95 SEDSISVDLLNYRKDGSTFWNALYVSPARDSSGKV 129
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 72/121 (59%), Gaps = 4/121 (3%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDPS +PI+F++ F K++G++ E++G+N R+ QGP T+ + ++R+AI E I
Sbjct: 40 ITDPSQHDNPIIFSNAAFSKLTGYTPEELVGKNCRLLQGPDTDPSAVTKLRKAIDSEDSI 99
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGG 152
V+LLNY+KDG+ FW +S G+ +F A Q+ H++N + +E G
Sbjct: 100 SVDLLNYRKDGSTFWNALYVSPARDSS-GKVKYFFASQLDFT---HIKNREIELAEARGN 155
Query: 153 S 153
+
Sbjct: 156 A 156
>gi|188580835|ref|YP_001924280.1| histidine kinase [Methylobacterium populi BJ001]
gi|179344333|gb|ACB79745.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
BJ001]
Length = 541
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 69/104 (66%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ R + ++ DP PD P+++A+ AF+++TGY +E++G NCRFL G DTD +
Sbjct: 33 FFAAVERTRMPMIVTDPRQPDNPIIFANRAFIRMTGYTVDELIGNNCRFLQGPDTDRDTV 92
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
++++I+ + ILNYRKD SSFWN L +SP+ N SG ++
Sbjct: 93 SDVRDAIREHREFATEILNYRKDGSSFWNALFVSPVFNRSGDLV 136
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 68/110 (61%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP +PI+FA+R F++M+G++ E+IG N R QGP T+R T+ ++R+AIRE R
Sbjct: 46 VTDPRQPDNPIIFANRAFIRMTGYTVDELIGNNCRFLQGPDTDRDTVSDVRDAIREHREF 105
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S VF + G +F Q+ + R+ S
Sbjct: 106 ATEILNYRKDGSSFWNALFVSPVFNRS-GDLVYFFGSQLDVSRRRDAEES 154
>gi|448426524|ref|ZP_21583373.1| HTR-like protein [Halorubrum terrestre JCM 10247]
gi|445679404|gb|ELZ31871.1| HTR-like protein [Halorubrum terrestre JCM 10247]
Length = 596
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 65/100 (65%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + DP D PMVY +D F+++TGYDR E +G NCRFL G DT+ + Q+
Sbjct: 263 ALDEAPVGITITDPAREDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEESVQQL 322
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+E+I E++ +V +LNYRKD + FWN + I+PI +A G V
Sbjct: 323 REAIDAEESTSVELLNYRKDGTEFWNRVSIAPICDADGAV 362
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALDE P TITDP+ +P+V+ + F++M+G+ R E IG N R QGP T ++ ++
Sbjct: 263 ALDEAPVGITITDPAREDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEESVQQL 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
REAI E V LLNY+KDGT FW ++ + DG TH+V Q I + K
Sbjct: 323 REAIDAEESTSVELLNYRKDGTEFWNRVSIAPICDA-DGAVTHWVGFQEDITAFKE 377
>gi|387893379|ref|YP_006323676.1| blue-light-activated histidine kinase [Pseudomonas fluorescens
A506]
gi|387160886|gb|AFJ56085.1| blue-light-activated histidine kinase [Pseudomonas fluorescens
A506]
Length = 525
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 66/94 (70%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
+ ++ DP PD P+++A+ AFL LTG++ +EV+G+NCRFL G TD L+Q++ +++
Sbjct: 35 AMIVTDPAGPDNPIIFANQAFLTLTGFELDEVIGRNCRFLQGPQTDKNALHQVQRAVEQH 94
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
V +LNYRKD S+FWN L ISP+ N G+++
Sbjct: 95 HEACVEVLNYRKDGSTFWNELFISPLFNERGQLV 128
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 70/109 (64%), Gaps = 2/109 (1%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ +TDP+ +PI+FA++ FL ++GF E+IGRN R QGP+T++ + +++ A+ +
Sbjct: 35 AMIVTDPAGPDNPIIFANQAFLTLTGFELDEVIGRNCRFLQGPQTDKNALHQVQRAVEQH 94
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
V +LNY+KDG+ FW +S +F E G+ +F A Q+ VSR+H
Sbjct: 95 HEACVEVLNYRKDGSTFWNELFISPLF-NERGQLVYFFASQLD-VSRRH 141
>gi|422617051|ref|ZP_16685755.1| histidine kinase [Pseudomonas syringae pv. japonica str. M301072]
gi|330897435|gb|EGH28854.1| histidine kinase [Pseudomonas syringae pv. japonica str. M301072]
Length = 534
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 68/104 (65%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ PD P+++A+ AFL++TGY E++G NCRFL G DTD +
Sbjct: 24 FFAAVETTRMPMIVTDPNRPDNPIIFANQAFLEMTGYASEEIIGSNCRFLQGPDTDRAAV 83
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
I+++++ + ILNYRKD SSFWN L ISP+ N +G ++
Sbjct: 84 QSIRDAVEERVDISTEILNYRKDGSSFWNALFISPVYNDAGDLI 127
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+FA++ FL+M+G++ EIIG N R QGP T+R + IR+A+ E I
Sbjct: 37 VTDPNRPDNPIIFANQAFLEMTGYASEEIIGSNCRFLQGPDTDRAAVQSIRDAVEERVDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+
Sbjct: 97 STEILNYRKDGSSFWNALFISPVY-NDAGDLIYFFASQLDISRRR 140
>gi|398836637|ref|ZP_10593969.1| PAS domain S-box [Herbaspirillum sp. YR522]
gi|398211118|gb|EJM97741.1| PAS domain S-box [Herbaspirillum sp. YR522]
Length = 549
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 65/96 (67%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ DP PD P+V+ +DAF+ +TGY R+EV+G+NCRFL G +TD V+ QI ++
Sbjct: 48 RMPMIVSDPRRPDTPIVFVNDAFINMTGYTRDEVIGRNCRFLQGPETDRAVVRQIGSALA 107
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ ILNYRKD S+FWN L ISP+ + G+++
Sbjct: 108 ERREIATEILNYRKDGSTFWNALFISPVYDRDGELV 143
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
++DP PIVF + F+ M+G++R E+IGRN R QGP T+R + +I A+ E R I
Sbjct: 53 VSDPRRPDTPIVFVNDAFINMTGYTRDEVIGRNCRFLQGPETDRAVVRQIGSALAERREI 112
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S V+ + DG +F Q+ I R+
Sbjct: 113 ATEILNYRKDGSTFWNALFISPVYDR-DGELVYFFGSQLDISRRR 156
>gi|428318054|ref|YP_007115936.1| PAS/PAC sensor signal transduction histidine kinase [Oscillatoria
nigro-viridis PCC 7112]
gi|428241734|gb|AFZ07520.1| PAS/PAC sensor signal transduction histidine kinase [Oscillatoria
nigro-viridis PCC 7112]
Length = 1113
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 67/100 (67%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + D PD P+VY + AF ++TGYDR+E++G+NCRFL G DTD + +I
Sbjct: 34 ALAATSNGIAIADATRPDKPIVYCNGAFERITGYDRSEIIGKNCRFLQGPDTDGAAVDRI 93
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +++ + C V + NYRKD ++FWN L ISP+R++SG V
Sbjct: 94 RAALKEQHDCKVVLKNYRKDGTAFWNELTISPVRDSSGIV 133
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL + I D + PIV+ + F +++G+ R+EIIG+N R QGP T+ + I
Sbjct: 34 ALAATSNGIAIADATRPDKPIVYCNGAFERITGYDRSEIIGKNCRFLQGPDTDGAAVDRI 93
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
R A++E+ +V L NY+KDGT FW +S V G THF+ VQ I R
Sbjct: 94 RAALKEQHDCKVVLKNYRKDGTAFWNELTISPVR-DSSGIVTHFIGVQSDITDR 146
>gi|323138393|ref|ZP_08073463.1| putative PAS/PAC sensor protein [Methylocystis sp. ATCC 49242]
gi|322396340|gb|EFX98871.1| putative PAS/PAC sensor protein [Methylocystis sp. ATCC 49242]
Length = 886
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 93/367 (25%), Positives = 165/367 (44%), Gaps = 51/367 (13%)
Query: 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRR 77
L + A+D+ P + I++ I + + F +++G+ EIIG+N R+ Q T++
Sbjct: 269 LTLSAAVDQSPVAVMISNKDGC---IEYVNSCFTRLTGYEANEIIGKNPRILQSGHTSKE 325
Query: 78 TIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ +AIR + + KK+G +W ++ DG TH++A+Q I +K
Sbjct: 326 QHRRLWDAIRSGEEWRGEIQDRKKNGELYWAQETIT-SLRDADGEITHYLAIQQDITEQK 384
Query: 138 HMRNSGMSYSEDGGGSRLREIVFGSC----------RREVCSDSLLDLDRVLALDSDD-- 185
+ + ++ SE+ R R + + R SD++ D +L L D+
Sbjct: 385 RDKEA-LAESEE----RFRNVAAMAGEWLWEQDPDGRYIYSSDAVHD---ILGLTPDEIR 436
Query: 186 --TGLEI--EDSCEASDLEKR-KAATAIDNILSVLTHYSQLTGRLVCGKRCSLP---GMG 237
+ LE+ D+ S + R + A ++ HY GR + + P G G
Sbjct: 437 NRSYLELFFPDNQNLSFMRLRAQEAGNQRPFHRIVNHYRHKDGRDIFTESTGAPIFDGAG 496
Query: 238 FI----------------SSSLYI---SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278
+ L + ++ ++ V+ D P P +Y + A +TG
Sbjct: 497 RLIKWRGVDHDITRRKEFEDELRVRNRAIESVQIGIVISDARAPGNPCIYVNPALSHITG 556
Query: 279 YDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
Y R +++G N R L G TD VL QI+ ++ + C V ++NYRKD +FWN L ISP+
Sbjct: 557 YTREQLLGGNMRMLQGPGTDPAVLEQIRHALAAGEICEVTMMNYRKDGGAFWNDLLISPV 616
Query: 339 RNASGKV 345
+ +GK+
Sbjct: 617 VDDTGKI 623
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ + I+D G+P ++ + ++G++R +++G N RM QGP T+ + +I
Sbjct: 524 AIESVQIGIVISDARAPGNPCIYVNPALSHITGYTREQLLGGNMRMLQGPGTDPAVLEQI 583
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R A+ EV ++NY+KDG FW +S V + G+ THF+ V + ++ S
Sbjct: 584 RHALAAGEICEVTMMNYRKDGGAFWNDLLISPVV-DDTGKITHFIGVLTDVTEKRRAEES 642
>gi|389693838|ref|ZP_10181932.1| PAS domain S-box [Microvirga sp. WSM3557]
gi|388587224|gb|EIM27517.1| PAS domain S-box [Microvirga sp. WSM3557]
Length = 586
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 74/117 (63%)
Query: 230 RCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNC 289
R S PG+ S+ + ++ + +L DP+LPD P+ +A+ AF LTGY EV+G+NC
Sbjct: 54 RISEPGLDDRSNVFFAAIEMTRMPMILTDPNLPDNPIAFANRAFQDLTGYTEEEVLGRNC 113
Query: 290 RFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
RFL G TD + +++ +++ ++A +V +LNY++D + FWN I P+ + GK+L
Sbjct: 114 RFLQGALTDKEAVAELRNAVREQRAISVELLNYKRDGTPFWNACFIGPVFDKDGKLL 170
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 70/105 (66%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP++ +PI FA+R F ++G++ E++GRN R QG T++ + E+R A+RE+R I
Sbjct: 80 LTDPNLPDNPIAFANRAFQDLTGYTEEEVLGRNCRFLQGALTDKEAVAELRNAVREQRAI 139
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
V LLNYK+DGTPFW + VF K DG+ +F A Q+ + R+
Sbjct: 140 SVELLNYKRDGTPFWNACFIGPVFDK-DGKLLYFFASQLDVTRRR 183
>gi|395493461|ref|ZP_10425040.1| histidine kinase [Sphingomonas sp. PAMC 26617]
Length = 536
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 69/107 (64%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + V+ DPH PD P+++ ++AF +TGY E++G NCRFL G +TD
Sbjct: 34 SDIFFAAVKTTRMPMVVTDPHQPDNPVIFCNEAFRHMTGYSDAEIIGINCRFLQGPETDR 93
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ Q++ +I Q +V ILNYRK+ S+FWN L ISP+ + SGK++
Sbjct: 94 DSVAQVRRAIAERQEVSVEILNYRKNGSTFWNALFISPVFDESGKLI 140
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+TDP +P++F + F M+G+S AEIIG N R QGP T+R ++ ++R AI E +
Sbjct: 48 MVVTDPHQPDNPVIFCNEAFRHMTGYSDAEIIGINCRFLQGPETDRDSVAQVRRAIAERQ 107
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+ V +LNY+K+G+ FW +S VF E G+ +F A Q+ + R+ +
Sbjct: 108 EVSVEILNYRKNGSTFWNALFISPVF-DESGKLIYFFASQLDVSRRREAEEA 158
>gi|325292827|ref|YP_004278691.1| sensory box histidine kinase [Agrobacterium sp. H13-3]
gi|325060680|gb|ADY64371.1| sensory box histidine kinase [Agrobacterium sp. H13-3]
Length = 369
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 72/123 (58%), Gaps = 8/123 (6%)
Query: 224 RLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNE 283
RLV G P ++ + ++ +P L D P+++ + AF +LTGY E
Sbjct: 17 RLVSGHASEDPFAAAFKAT--------RMPMIITNPLLNDNPIIFCNAAFSRLTGYSAEE 68
Query: 284 VVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+VGQNCR L G DTD + +++E+I EQ + ILNYRKD S FWN L +SP+R+ASG
Sbjct: 69 LVGQNCRLLQGPDTDPGSVTKLREAIAAEQDLAIDILNYRKDGSEFWNALFVSPVRDASG 128
Query: 344 KVL 346
V+
Sbjct: 129 TVI 131
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P ++ +PI+F + F +++G+S E++G+N R+ QGP T+ ++ ++REAI E+ +
Sbjct: 41 ITNPLLNDNPIIFCNAAFSRLTGYSAEELVGQNCRLLQGPDTDPGSVTKLREAIAAEQDL 100
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+++LNY+KDG+ FW +S V G +F A Q+
Sbjct: 101 AIDILNYRKDGSEFWNALFVSPVRDAS-GTVIYFFASQL 138
>gi|408380125|ref|ZP_11177713.1| sensory box histidine kinase [Agrobacterium albertimagni AOL15]
gi|407745966|gb|EKF57494.1| sensory box histidine kinase [Agrobacterium albertimagni AOL15]
Length = 375
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 66/96 (68%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ DP PD P+++ + AF LTGY +E++G+NCR L G +TD+ + +++E+I
Sbjct: 36 RMPMLITDPRQPDNPIIFCNQAFSNLTGYSIDELIGRNCRLLQGPETDSNAVARLREAIA 95
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
EQ + ILNYRKD S FWN L +SP+R+A G+V+
Sbjct: 96 AEQDLAIDILNYRKDGSQFWNALFVSPVRDADGEVV 131
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP +PI+F ++ F ++G+S E+IGRN R+ QGP T+ + +REAI E+ +
Sbjct: 41 ITDPRQPDNPIIFCNQAFSNLTGYSIDELIGRNCRLLQGPETDSNAVARLREAIAAEQDL 100
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+++LNY+KDG+ FW +S V DG +F A Q+ + K
Sbjct: 101 AIDILNYRKDGSQFWNALFVSPV-RDADGEVVYFFASQLDFTTIK 144
>gi|390573573|ref|ZP_10253744.1| histidine kinase [Burkholderia terrae BS001]
gi|389934568|gb|EIM96525.1| histidine kinase [Burkholderia terrae BS001]
Length = 192
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 70/104 (67%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + V+ DP+LPD P+++A+ AFL++TGY+ E++G NCRFL G +TD +
Sbjct: 25 FFAAVSTTRMPMVVTDPNLPDNPVIFANHAFLRMTGYELQEIIGTNCRFLQGPETDRATI 84
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
++++++ + ILNYRKD S+FWN L +SP+ N G+++
Sbjct: 85 DEVRDAVAHRREIATEILNYRKDGSTFWNALFVSPVFNEQGELV 128
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP++ +P++FA+ FL+M+G+ EIIG N R QGP T+R TI E+R+A+ R I
Sbjct: 38 VTDPNLPDNPVIFANHAFLRMTGYELQEIIGTNCRFLQGPETDRATIDEVRDAVAHRREI 97
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S VF E G +F Q+ + R+
Sbjct: 98 ATEILNYRKDGSTFWNALFVSPVF-NEQGELVYFFGSQLDVSRRR 141
>gi|420250294|ref|ZP_14753516.1| PAS domain S-box [Burkholderia sp. BT03]
gi|398061555|gb|EJL53345.1| PAS domain S-box [Burkholderia sp. BT03]
Length = 533
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 70/104 (67%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + V+ DP+LPD P+++A+ AFL++TGY+ E++G NCRFL G +TD +
Sbjct: 25 FFAAVSTTRMPMVVTDPNLPDNPVIFANHAFLRMTGYELPEIIGTNCRFLQGPETDRATI 84
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
++++++ + +LNYRKD S+FWN L ISP+ N G+++
Sbjct: 85 DEVRDAVAHRREIATEVLNYRKDGSTFWNALFISPVFNEQGELV 128
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 68/112 (60%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+TDP++ +P++FA+ FL+M+G+ EIIG N R QGP T+R TI E+R+A+ R
Sbjct: 36 MVVTDPNLPDNPVIFANHAFLRMTGYELPEIIGTNCRFLQGPETDRATIDEVRDAVAHRR 95
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
I +LNY+KDG+ FW +S VF E G +F Q+ + R+ ++
Sbjct: 96 EIATEVLNYRKDGSTFWNALFISPVF-NEQGELVYFFGSQLDVSRRRDAEDA 146
>gi|194709097|pdb|2Z6D|A Chain A, Crystal Structure Of Lov1 Domain Of Phototropin2 From
Arabidopsis Thaliana
gi|194709098|pdb|2Z6D|B Chain B, Crystal Structure Of Lov1 Domain Of Phototropin2 From
Arabidopsis Thaliana
Length = 130
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 70/108 (64%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L ++Q+FV+ D P P+VYAS F +TGY E+VG+NCRFL G DTD
Sbjct: 4 VSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTD 63
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I++ ++ ++ R+LNY+KD + FWNLL ++PI++ G +
Sbjct: 64 KNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDQGNTI 111
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 72/120 (60%), Gaps = 3/120 (2%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + AL L +F ++D + PIV+AS GF M+G+S EI+GRN R QGP T
Sbjct: 3 RVSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDT 62
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
++ + +IR+ ++ + LLNYKKDGTPFW L ++ + K+D G F+ +QV +
Sbjct: 63 DKNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPI--KDDQGNTIKFIGMQVEV 120
>gi|253750642|gb|ACT35017.1| phytochrome 3 [Coniogramme intermedia var. glabra]
Length = 1443
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 69/103 (66%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI SFV+ DP L D P+++ASD FL+LT Y R EV+G+NCRFL G DTD +
Sbjct: 936 LATTLERIGHSFVITDPRLLDNPIIFASDQFLELTEYSREEVLGENCRFLQGRDTDRKAV 995
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
I+++++ + TV++LNY++ FWNL H+ +++ G +
Sbjct: 996 QLIRDAVKEGRDMTVQLLNYKRSGKPFWNLFHLQAMKDKKGNL 1038
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 68/98 (69%), Gaps = 2/98 (2%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ SFV++D PD+P+++AS F LTGY EV+G NCRFL G DT+ V+ I++++
Sbjct: 674 QTSFVVVDALKPDLPIIFASTGFFNLTGYSAREVIGGNCRFLQGPDTNPAVIASIRQALA 733
Query: 311 TEQACTV--RILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ T R+LNYRKD S+FWNLL I+PI++ SG ++
Sbjct: 734 PQGTGTFCGRLLNYRKDGSNFWNLLTIAPIKDDSGTIV 771
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 70/107 (65%), Gaps = 1/107 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + SF ITDP + +PI+FAS FL+++ +SR E++G N R QG T+R+ + IR
Sbjct: 940 LERIGHSFVITDPRLLDNPIIFASDQFLELTEYSREEVLGENCRFLQGRDTDRKAVQLIR 999
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
+A++E R + V LLNYK+ G PFW LF + + K+ G +F+ VQ
Sbjct: 1000 DAVKEGRDMTVQLLNYKRSGKPFWNLFHLQAMKDKK-GNLQYFIGVQ 1045
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 59/107 (55%), Gaps = 5/107 (4%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SF + D PI+FAS GF ++G+S E+IG N R QGP TN I IR+A+ +
Sbjct: 676 SFVVVDALKPDLPIIFASTGFFNLTGYSAREVIGGNCRFLQGPDTNPAVIASIRQALAPQ 735
Query: 90 RPIEV--NLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
LLNY+KDG+ FW L ++ + K+D G V VQ+ +
Sbjct: 736 GTGTFCGRLLNYRKDGSNFWNLLTIAPI--KDDSGTIVKLVGVQLEV 780
>gi|237797307|ref|ZP_04585768.1| histidine kinase [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331020157|gb|EGI00214.1| histidine kinase [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 534
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 68/104 (65%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ PD P+++++ AFL +TGY +E++G NCRFL G DTD V+
Sbjct: 24 FFAAVETTRMPMIVTDPNRPDNPIIFSNRAFLDMTGYSASEIIGTNCRFLQGPDTDRAVV 83
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
I+ +IQ + ILNYRKD S+FWN L ISP+ N +G ++
Sbjct: 84 QSIRNAIQDRVDISTEILNYRKDGSTFWNALFISPVYNDAGDLI 127
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+F++R FL M+G+S +EIIG N R QGP T+R + IR AI++ I
Sbjct: 37 VTDPNRPDNPIIFSNRAFLDMTGYSASEIIGTNCRFLQGPDTDRAVVQSIRNAIQDRVDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S V+ + G +F A Q+ I RK
Sbjct: 97 STEILNYRKDGSTFWNALFISPVY-NDAGDLIYFFASQLDISRRK 140
>gi|167648510|ref|YP_001686173.1| signal transduction histidine kinase [Caulobacter sp. K31]
gi|167350940|gb|ABZ73675.1| signal transduction histidine kinase [Caulobacter sp. K31]
Length = 369
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 68/93 (73%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ D D P+V+A+DAFL LTGYD +EV+G+NCRFL G++TD + ++++++ +
Sbjct: 35 MIVTDARQSDNPIVFANDAFLALTGYDLDEVIGRNCRFLQGLETDPDQVDRLRQAVAQGE 94
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +LNYRKD S+FWN L++SP+R +G+VL
Sbjct: 95 EVALELLNYRKDGSTFWNALYLSPVRGETGEVL 127
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TD S +PIVFA+ FL ++G+ E+IGRN R QG T+ + +R+A+ + +
Sbjct: 37 VTDARQSDNPIVFANDAFLALTGYDLDEVIGRNCRFLQGLETDPDQVDRLRQAVAQGEEV 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHF 126
+ LLNY+KDG+ FW +S V G E G +F
Sbjct: 97 ALELLNYRKDGSTFWNALYLSPVRG-ETGEVLYF 129
>gi|168702150|ref|ZP_02734427.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
2246]
Length = 997
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 65/96 (67%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+ Q V+ D P P+V+ S F +LTGY E +G+NCRFL G DTD + ++++++
Sbjct: 507 VTQGIVITDARRPGHPIVFVSPGFERLTGYSAAEALGRNCRFLQGKDTDPAAVDRLRDAL 566
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ E+ACTV +LNYRKD ++FWN L +SP+R+ +V
Sbjct: 567 RDERACTVELLNYRKDGTAFWNELSLSPVRDGGDRV 602
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+ + ITD GHPIVF S GF +++G+S AE +GRN R QG T+ + +
Sbjct: 503 AIHAVTQGIVITDARRPGHPIVFVSPGFERLTGYSAAEALGRNCRFLQGKDTDPAAVDRL 562
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
R+A+R+ER V LLNY+KDGT FW +S V D R T FV V + R+ +
Sbjct: 563 RDALRDERACTVELLNYRKDGTAFWNELSLSPVRDGGD-RVTQFVGVLTDVTQRRAL 618
>gi|422641750|ref|ZP_16705172.1| histidine kinase, partial [Pseudomonas syringae Cit 7]
gi|330954136|gb|EGH54396.1| histidine kinase [Pseudomonas syringae Cit 7]
Length = 266
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 68/104 (65%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ PD P+++A+ AFL++TGY E++G NCRFL G DTD V+
Sbjct: 24 FFAAVETTRMPMIVTDPNRPDNPIIFANRAFLEMTGYASEEIIGSNCRFLQGPDTDRAVV 83
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
I+++I + ILNYRKD S+FWN L ISP+ N +G ++
Sbjct: 84 KSIRDAIDERVDISTEILNYRKDGSTFWNALFISPVYNDAGDLI 127
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+FA+R FL+M+G++ EIIG N R QGP T+R + IR+AI E I
Sbjct: 37 VTDPNRPDNPIIFANRAFLEMTGYASEEIIGSNCRFLQGPDTDRAVVKSIRDAIDERVDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+
Sbjct: 97 STEILNYRKDGSTFWNALFISPVY-NDAGDLIYFFASQLDISRRR 140
>gi|296533497|ref|ZP_06896072.1| sensor histidine kinase/response regulator [Roseomonas cervicalis
ATCC 49957]
gi|296266172|gb|EFH12222.1| sensor histidine kinase/response regulator [Roseomonas cervicalis
ATCC 49957]
Length = 537
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 71/103 (68%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+I++ + ++ D PDMP+V+A+ AFL++TGY ++E+VG NCRFL G +TD +
Sbjct: 27 FHIAVETTRMPMIVADARAPDMPIVFANHAFLQMTGYTQDEIVGTNCRFLQGPETDRASI 86
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
++++++ E+ + ILNYRK+ S+FWN L ISP+ + G++
Sbjct: 87 DAVRQALREEREIAIEILNYRKNGSTFWNALFISPVYDDDGRL 129
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 74/122 (60%), Gaps = 1/122 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
H A++ + D PIVFA+ FL+M+G+++ EI+G N R QGP T+R +I
Sbjct: 28 HIAVETTRMPMIVADARAPDMPIVFANHAFLQMTGYTQDEIVGTNCRFLQGPETDRASID 87
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140
+R+A+REER I + +LNY+K+G+ FW +S V+ +DGR +F Q+ + R+
Sbjct: 88 AVRQALREEREIAIEILNYRKNGSTFWNALFISPVY-DDDGRLRYFFGSQLDVSRRRDAE 146
Query: 141 NS 142
++
Sbjct: 147 DA 148
>gi|448535723|ref|ZP_21622243.1| HTR-like protein [Halorubrum hochstenium ATCC 700873]
gi|445703224|gb|ELZ55159.1| HTR-like protein [Halorubrum hochstenium ATCC 700873]
Length = 594
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 64/100 (64%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + DP D PMVY +D F+++TGYDR E +G NCRFL G DT+ + Q+
Sbjct: 263 ALDEAPVGITITDPQREDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEASVQQL 322
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+++I ++ +V +LNYRKD + FWN + I+PI +A G V
Sbjct: 323 RDAIDADEPTSVELLNYRKDGTEFWNRVSIAPISDADGTV 362
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALDE P TITDP +P+V+ + F++M+G+ R E IG N R QGP T ++ ++
Sbjct: 263 ALDEAPVGITITDPQREDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEASVQQL 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
R+AI + P V LLNY+KDGT FW ++ + DG TH+V Q I + K
Sbjct: 323 RDAIDADEPTSVELLNYRKDGTEFWNRVSIAPI-SDADGTVTHWVGFQEDITAFKE 377
>gi|448607640|ref|ZP_21659593.1| HTR-like protein [Haloferax sulfurifontis ATCC BAA-897]
gi|445737577|gb|ELZ89109.1| HTR-like protein [Haloferax sulfurifontis ATCC BAA-897]
Length = 640
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P +TDP + +PIV+A+ F ++G+ E++GRN R QG RT+ + E+
Sbjct: 163 AMDEAPVGIVLTDPHAADNPIVYANEQFADLTGYRIEEVMGRNCRFLQGERTDEAAVAEL 222
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R A+ E RP+ LLNY+KDGT FW +++ +F +DG FV Q I RK
Sbjct: 223 RSAVEERRPVTTELLNYRKDGTEFWNRVRVAPIF-DDDGAVEFFVGFQDDITPRK 276
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 59/92 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
VL DPH D P+VYA++ F LTGY EV+G+NCRFL G TD + +++ +++ +
Sbjct: 171 IVLTDPHAADNPIVYANEQFADLTGYRIEEVMGRNCRFLQGERTDEAAVAELRSAVEERR 230
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
T +LNYRKD + FWN + ++PI + G V
Sbjct: 231 PVTTELLNYRKDGTEFWNRVRVAPIFDDDGAV 262
>gi|422645017|ref|ZP_16708154.1| histidine kinase [Pseudomonas syringae pv. maculicola str. ES4326]
gi|330958568|gb|EGH58828.1| histidine kinase [Pseudomonas syringae pv. maculicola str. ES4326]
Length = 534
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 71/104 (68%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ PD P+++++ AFL++TGY +E++G NCRFL G +TD +V+
Sbjct: 24 FFAAVETTRMPMIVTDPNRPDNPIIFSNRAFLEMTGYSSDEIIGTNCRFLQGPETDPSVV 83
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
++++I+ + ILNYRKD SSFWN L ISP+ N +G ++
Sbjct: 84 QSLRDAIRERTDISAEILNYRKDGSSFWNALFISPVYNDAGSLI 127
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+F++R FL+M+G+S EIIG N R QGP T+ + +R+AIRE I
Sbjct: 37 VTDPNRPDNPIIFSNRAFLEMTGYSSDEIIGTNCRFLQGPETDPSVVQSLRDAIRERTDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S V+ + G +F A Q+ I RK
Sbjct: 97 SAEILNYRKDGSSFWNALFISPVY-NDAGSLIYFFASQLDISRRK 140
>gi|418408140|ref|ZP_12981456.1| sensory box histidine kinase [Agrobacterium tumefaciens 5A]
gi|358005054|gb|EHJ97380.1| sensory box histidine kinase [Agrobacterium tumefaciens 5A]
Length = 369
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 65/96 (67%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ +P L D P+++ + AF +LTGY E+VGQNCR L G DTD + +++E+I
Sbjct: 36 RMPMIITNPLLNDNPIIFCNAAFSRLTGYSAEELVGQNCRLLQGPDTDPGSVTKLREAIA 95
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
EQ + ILNYRKD S FWN L +SP+R+A+G V+
Sbjct: 96 AEQDLAIDILNYRKDGSEFWNALFVSPVRDAAGTVI 131
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P ++ +PI+F + F +++G+S E++G+N R+ QGP T+ ++ ++REAI E+ +
Sbjct: 41 ITNPLLNDNPIIFCNAAFSRLTGYSAEELVGQNCRLLQGPDTDPGSVTKLREAIAAEQDL 100
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+++LNY+KDG+ FW +S V G +F A Q+
Sbjct: 101 AIDILNYRKDGSEFWNALFVSPVRDAA-GTVIYFFASQL 138
>gi|404253790|ref|ZP_10957758.1| histidine kinase [Sphingomonas sp. PAMC 26621]
Length = 536
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 69/107 (64%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + V+ DPH PD P+++ ++AF +TGY E++G NCRFL G +TD
Sbjct: 34 SDIFFAAVKTTRMPMVVTDPHQPDNPVIFCNEAFRHMTGYSDAEIIGINCRFLQGPETDR 93
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ Q++ +I Q +V ILNYRK+ S+FWN L ISP+ + +GK++
Sbjct: 94 DSVAQVRRAIAERQEVSVEILNYRKNGSTFWNALFISPVFDEAGKLI 140
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+TDP +P++F + F M+G+S AEIIG N R QGP T+R ++ ++R AI E +
Sbjct: 48 MVVTDPHQPDNPVIFCNEAFRHMTGYSDAEIIGINCRFLQGPETDRDSVAQVRRAIAERQ 107
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+ V +LNY+K+G+ FW +S VF E G+ +F A Q+ + R+ +
Sbjct: 108 EVSVEILNYRKNGSTFWNALFISPVF-DEAGKLIYFFASQLDVSRRREAEEA 158
>gi|444310002|ref|ZP_21145630.1| signal transduction histidine kinase [Ochrobactrum intermedium M86]
gi|443486649|gb|ELT49423.1| signal transduction histidine kinase [Ochrobactrum intermedium M86]
Length = 491
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 65/92 (70%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ +P LPD P+V+A+ AF LTGY+ +E++G+NCRFL G TD + I+ +I+TEQ
Sbjct: 34 MLITNPRLPDNPIVFANKAFQNLTGYEADEIIGKNCRFLQGPGTDPKHVEMIRAAIETEQ 93
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ + ILNY+K FWN LHISP++ +G++
Sbjct: 94 SIDIDILNYKKSGEPFWNRLHISPVKTEAGEL 125
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+ P IT+P + +PIVFA++ F ++G+ EIIG+N R QGP T+ + + I
Sbjct: 26 AVQLTPMPMLITNPRLPDNPIVFANKAFQNLTGYEADEIIGKNCRFLQGPGTDPKHVEMI 85
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
R AI E+ I++++LNYKK G PFW +S V E G HFV+ Q+ +
Sbjct: 86 RAAIETEQSIDIDILNYKKSGEPFWNRLHISPV-KTEAGELHHFVSSQLDVT 136
>gi|239833953|ref|ZP_04682281.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
3301]
gi|239822016|gb|EEQ93585.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
3301]
Length = 495
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 65/92 (70%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ +P LPD P+V+A+ AF LTGY+ +E++G+NCRFL G TD + I+ +I+TEQ
Sbjct: 38 MLITNPRLPDNPIVFANKAFQNLTGYEADEIIGKNCRFLQGPGTDPKHVEMIRAAIETEQ 97
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ + ILNY+K FWN LHISP++ +G++
Sbjct: 98 SIDIDILNYKKSGEPFWNRLHISPVKTEAGEL 129
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+ P IT+P + +PIVFA++ F ++G+ EIIG+N R QGP T+ + + I
Sbjct: 30 AVQLTPMPMLITNPRLPDNPIVFANKAFQNLTGYEADEIIGKNCRFLQGPGTDPKHVEMI 89
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
R AI E+ I++++LNYKK G PFW +S V E G HFV+ Q+ +
Sbjct: 90 RAAIETEQSIDIDILNYKKSGEPFWNRLHISPV-KTEAGELHHFVSSQLDVT 140
>gi|188582718|ref|YP_001926163.1| signal transduction histidine kinase [Methylobacterium populi
BJ001]
gi|179346216|gb|ACB81628.1| putative signal transduction histidine kinase [Methylobacterium
populi BJ001]
Length = 354
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 77/127 (60%), Gaps = 6/127 (4%)
Query: 220 QLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGY 279
QLT R+ R G G ++ + + ++ DP D P++YA+DAFL+LTGY
Sbjct: 8 QLTERIRASARS---GKG---DPFAAAVRATRMAMIITDPRRLDNPIIYANDAFLRLTGY 61
Query: 280 DRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIR 339
R EV G+NCRFL G +TD + +I+ +I++EQ + ++NYRKD S+F N L ISP+
Sbjct: 62 TRLEVTGRNCRFLQGPETDLDTVARIRAAIRSEQDVSAELVNYRKDGSTFHNALFISPVH 121
Query: 340 NASGKVL 346
+ G +L
Sbjct: 122 DEDGTLL 128
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 65/110 (59%), Gaps = 1/110 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ ITDP +PI++A+ FL+++G++R E+ GRN R QGP T+ T+ IR AIR E
Sbjct: 35 AMIITDPRRLDNPIIYANDAFLRLTGYTRLEVTGRNCRFLQGPETDLDTVARIRAAIRSE 94
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+ + L+NY+KDG+ F +S V EDG F A Q+ + R +
Sbjct: 95 QDVSAELVNYRKDGSTFHNALFISPVH-DEDGTLLFFFASQLDVSERHAL 143
>gi|448452034|ref|ZP_21593127.1| HTR-like protein [Halorubrum litoreum JCM 13561]
gi|445809942|gb|EMA59977.1| HTR-like protein [Halorubrum litoreum JCM 13561]
Length = 596
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 65/100 (65%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + DP D PMVY +D F+++TGYDR E +G NCRFL G DT+ + ++
Sbjct: 263 ALDEAPVGITITDPAREDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEESVQEL 322
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+E+I E++ +V +LNYRKD + FWN + I+PI +A G V
Sbjct: 323 REAIDAEESTSVELLNYRKDGTEFWNRVSIAPICDADGAV 362
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALDE P TITDP+ +P+V+ + F++M+G+ R E IG N R QGP T ++ E+
Sbjct: 263 ALDEAPVGITITDPAREDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEESVQEL 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
REAI E V LLNY+KDGT FW ++ + DG TH+V Q I + K
Sbjct: 323 REAIDAEESTSVELLNYRKDGTEFWNRVSIAPICDA-DGAVTHWVGFQEDITAFKE 377
>gi|448352551|ref|ZP_21541334.1| HTR-like protein [Natrialba hulunbeirensis JCM 10989]
gi|445642613|gb|ELY95680.1| HTR-like protein [Natrialba hulunbeirensis JCM 10989]
Length = 736
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRT 78
W +A+DE I DP+ + PI + ++ F +++G+ R +++GRN R QGP T T
Sbjct: 387 WKTKAMDEASMGIVIADPTEADTPITYVNKEFCELTGYDREDVLGRNCRFLQGPLTAEST 446
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+ +RE I P++V++LNY++DGTPFW +++ VF +DG ++FV Q + +R
Sbjct: 447 VETVREGIANAEPVDVDILNYRRDGTPFWNNLQITPVF-DDDGSVSYFVGFQTDVTAR 503
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 56/92 (60%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ DP D P+ Y + F +LTGYDR +V+G+NCRFL G T + + ++E I +
Sbjct: 399 IVIADPTEADTPITYVNKEFCELTGYDREDVLGRNCRFLQGPLTAESTVETVREGIANAE 458
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
V ILNYR+D + FWN L I+P+ + G V
Sbjct: 459 PVDVDILNYRRDGTPFWNNLQITPVFDDDGSV 490
>gi|422590595|ref|ZP_16665249.1| histidine kinase [Pseudomonas syringae pv. morsprunorum str.
M302280]
gi|330877741|gb|EGH11890.1| histidine kinase [Pseudomonas syringae pv. morsprunorum str.
M302280]
Length = 534
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 69/104 (66%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ PD P+++++ AFL++TGY E++G NCRFL G DTD V+
Sbjct: 24 FFAAVETTRMPMIVTDPNSPDNPIIFSNRAFLEMTGYAAEEILGTNCRFLQGPDTDPAVV 83
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
I+++I+ + I+NYRKD SSFWN L ISP+ N +G ++
Sbjct: 84 RSIRDAIEERADISAEIINYRKDGSSFWNALFISPVYNDAGDLI 127
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+F++R FL+M+G++ EI+G N R QGP T+ + IR+AI E I
Sbjct: 37 VTDPNSPDNPIIFSNRAFLEMTGYAAEEILGTNCRFLQGPDTDPAVVRSIRDAIEERADI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
++NY+KDG+ FW +S V+ + G +F A Q+ I RK
Sbjct: 97 SAEIINYRKDGSSFWNALFISPVY-NDAGDLIYFFASQLDISRRK 140
>gi|422652098|ref|ZP_16714886.1| histidine kinase [Pseudomonas syringae pv. actinidiae str. M302091]
gi|330965169|gb|EGH65429.1| histidine kinase [Pseudomonas syringae pv. actinidiae str. M302091]
Length = 534
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 69/104 (66%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ PD P+++++ AFL++TGY E++G NCRFL G DTD V+
Sbjct: 24 FFAAVETTRMPMIVTDPNSPDNPIIFSNRAFLEMTGYAAEEILGTNCRFLQGPDTDPAVV 83
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
I+++I+ + I+NYRKD SSFWN L ISP+ N +G ++
Sbjct: 84 RSIRDAIEERADISAEIINYRKDGSSFWNALFISPVYNDAGDLI 127
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+F++R FL+M+G++ EI+G N R QGP T+ + IR+AI E I
Sbjct: 37 VTDPNSPDNPIIFSNRAFLEMTGYAAEEILGTNCRFLQGPDTDPAVVRSIRDAIEERADI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
++NY+KDG+ FW +S V+ + G +F A Q+ I RK
Sbjct: 97 SAEIINYRKDGSSFWNALFISPVY-NDAGDLIYFFASQLDISRRK 140
>gi|170742982|ref|YP_001771637.1| histidine kinase [Methylobacterium sp. 4-46]
gi|168197256|gb|ACA19203.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
Length = 544
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 70/107 (65%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + ++ DP PD P+++A+ AF LTGYD +E++G+NCRFL G +TD
Sbjct: 35 SDIFFAAVETTRMPMIVTDPRQPDNPIIFANQAFRALTGYDPSELIGRNCRFLQGPETDP 94
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +++ +I+ + + ILNYRK+ SSFWN L +SP+ N +G ++
Sbjct: 95 QTIAEVRRAIKERREISTEILNYRKNGSSFWNALFVSPVYNDAGDLV 141
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 68/110 (61%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP +PI+FA++ F ++G+ +E+IGRN R QGP T+ +TI E+R AI+E R I
Sbjct: 51 VTDPRQPDNPIIFANQAFRALTGYDPSELIGRNCRFLQGPETDPQTIAEVRRAIKERREI 110
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+K+G+ FW +S V+ + G +F Q+ + R+ ++
Sbjct: 111 STEILNYRKNGSSFWNALFVSPVY-NDAGDLVYFFGSQLDVSRRRDAEDA 159
>gi|428311102|ref|YP_007122079.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428252714|gb|AFZ18673.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 929
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 65/92 (70%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ D D P++Y + AFLK+TGY + EV+G+NCRFL G DTD + QI++SI+T Q
Sbjct: 41 IVISDARCFDNPIIYCNPAFLKITGYSQEEVIGRNCRFLQGHDTDPIAVEQIRQSIRTGQ 100
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
V + NYRKD + FWN L ISP+R++SGKV
Sbjct: 101 EVRVVLKNYRKDGTLFWNDLTISPVRDSSGKV 132
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 69/121 (57%), Gaps = 3/121 (2%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
I+D +PI++ + FLK++G+S+ E+IGRN R QG T+ + +IR++IR +
Sbjct: 41 IVISDARCFDNPIIYCNPAFLKITGYSQEEVIGRNCRFLQGHDTDPIAVEQIRQSIRTGQ 100
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG--MSYSE 148
+ V L NY+KDGT FW +S V G+ THF+ VQ I RK + M +S
Sbjct: 101 EVRVVLKNYRKDGTLFWNDLTISPV-RDSSGKVTHFIGVQTDITERKQAEETQQLMQFSI 159
Query: 149 D 149
D
Sbjct: 160 D 160
>gi|28870075|ref|NP_792694.1| sensory box histidine kinase/response regulator [Pseudomonas
syringae pv. tomato str. DC3000]
gi|213966898|ref|ZP_03395048.1| sensory box histidine kinase/response regulator [Pseudomonas
syringae pv. tomato T1]
gi|301381580|ref|ZP_07229998.1| histidine kinase [Pseudomonas syringae pv. tomato Max13]
gi|302061664|ref|ZP_07253205.1| histidine kinase [Pseudomonas syringae pv. tomato K40]
gi|302134348|ref|ZP_07260338.1| histidine kinase [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|81730912|sp|Q881J7.1|LOVHK_PSESM RecName: Full=Blue-light-activated protein; Includes: RecName:
Full=Blue-light-activated histidine kinase; AltName:
Full=PS-LOV-histidine kinase; Short=PS-LOV-HK; Includes:
RecName: Full=Response regulator
gi|28853321|gb|AAO56389.1| sensory box histidine kinase/response regulator [Pseudomonas
syringae pv. tomato str. DC3000]
gi|213928220|gb|EEB61765.1| sensory box histidine kinase/response regulator [Pseudomonas
syringae pv. tomato T1]
Length = 534
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 68/104 (65%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ PD P+++++ AFL++TGY E++G NCRFL G DTD V+
Sbjct: 24 FFAAVETTRMPMIVTDPNRPDNPIIFSNRAFLEMTGYTAEEILGTNCRFLQGPDTDPAVV 83
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
I+++I + I+NYRKD SSFWN L ISP+ N +G ++
Sbjct: 84 QSIRDAIAQRNDISAEIINYRKDGSSFWNALFISPVYNDAGDLI 127
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+F++R FL+M+G++ EI+G N R QGP T+ + IR+AI + I
Sbjct: 37 VTDPNRPDNPIIFSNRAFLEMTGYTAEEILGTNCRFLQGPDTDPAVVQSIRDAIAQRNDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
++NY+KDG+ FW +S V+ + G +F A Q+ I RK
Sbjct: 97 SAEIINYRKDGSSFWNALFISPVY-NDAGDLIYFFASQLDISRRK 140
>gi|168701427|ref|ZP_02733704.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
2246]
Length = 1032
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 63/96 (65%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+ Q ++ P LPD P+ YAS F +TGY E +G+NCRFL G D+D + ++E++
Sbjct: 521 VTQGILITSPALPDNPITYASPGFEGVTGYPPREALGRNCRFLQGKDSDPAAVALVREAV 580
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ + C V +LNYRKD + FWN L +SPIR+ +G++
Sbjct: 581 RAGRDCAVEVLNYRKDGTPFWNALSVSPIRDDAGEL 616
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 3/118 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+ + IT P++ +PI +AS GF ++G+ E +GRN R QG ++ + +
Sbjct: 517 AIQAVTQGILITSPALPDNPITYASPGFEGVTGYPPREALGRNCRFLQGKDSDPAAVALV 576
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIVSRKHM 139
REA+R R V +LNY+KDGTPFW +S + ++D G THFV V V + RK +
Sbjct: 577 REAVRAGRDCAVEVLNYRKDGTPFWNALSVSPI--RDDAGELTHFVGVLVDVTDRKKL 632
>gi|170749966|ref|YP_001756226.1| histidine kinase [Methylobacterium radiotolerans JCM 2831]
gi|170656488|gb|ACB25543.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
radiotolerans JCM 2831]
Length = 539
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 69/107 (64%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + ++ DP PD P+++A+ AFL +TGY E++G+NCRFL G DTD
Sbjct: 29 SDIFFAAVETTRMPMIVTDPRQPDNPIIFANRAFLAMTGYTPEELIGRNCRFLQGPDTDR 88
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ Q++ +I ++ ILNYRK+ S+FWN L +SP+ NA G+++
Sbjct: 89 DSVAQVRAAIAEKREFATEILNYRKNGSTFWNALFVSPVYNADGELV 135
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP +PI+FA+R FL M+G++ E+IGRN R QGP T+R ++ ++R AI E+R
Sbjct: 45 VTDPRQPDNPIIFANRAFLAMTGYTPEELIGRNCRFLQGPDTDRDSVAQVRAAIAEKREF 104
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+K+G+ FW +S V+ DG ++ Q+ + R+
Sbjct: 105 ATEILNYRKNGSTFWNALFVSPVY-NADGELVYYFGSQLDVSRRR 148
>gi|337278915|ref|YP_004618386.1| hybrid histidine kinase [Ramlibacter tataouinensis TTB310]
gi|334729991|gb|AEG92367.1| candidate histidine kinase, hybrid [Ramlibacter tataouinensis
TTB310]
Length = 537
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 74/119 (62%), Gaps = 3/119 (2%)
Query: 228 GKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQ 287
G+ +P G + + ++ + V+ DPH PD P+ + +DAFL +TGY+ EV+G+
Sbjct: 21 GQGAGVPATGNL---FFAAVEMTRMPMVVTDPHQPDNPIAFVNDAFLDMTGYEEAEVLGR 77
Query: 288 NCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
NCR L G +TD+ + +I+ ++ ++A V ILNY+ D + FWN L I PI ++ G+++
Sbjct: 78 NCRILQGPETDSETVAEIRTALAEQRAVAVDILNYKADGTPFWNALFIGPIFDSRGRLI 136
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 66/107 (61%), Gaps = 1/107 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+TDP +PI F + FL M+G+ AE++GRN R+ QGP T+ T+ EIR A+ E+R
Sbjct: 44 MVVTDPHQPDNPIAFVNDAFLDMTGYEEAEVLGRNCRILQGPETDSETVAEIRTALAEQR 103
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ V++LNYK DGTPFW + +F GR H+ + Q+ I R+
Sbjct: 104 AVAVDILNYKADGTPFWNALFIGPIFDSR-GRLIHWSSSQMDITRRR 149
>gi|170750900|ref|YP_001757160.1| putative PAS/PAC sensor protein [Methylobacterium radiotolerans JCM
2831]
gi|170657422|gb|ACB26477.1| putative PAS/PAC sensor protein [Methylobacterium radiotolerans JCM
2831]
Length = 164
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 68/96 (70%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ DP D P+V+ +DAFLKLTGY R EVVG+NCRFL G DT+ + +++ +I+
Sbjct: 33 RMPMIITDPAQHDNPIVFVNDAFLKLTGYTRMEVVGRNCRFLQGPDTEAAAVDRLRAAIR 92
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
E+ V +LNYRKD S+F N L++ P+R+ +G+V+
Sbjct: 93 REEDIRVDLLNYRKDGSTFQNALYVGPVRDEAGRVV 128
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP+ +PIVF + FLK++G++R E++GRN R QGP T + +R AIR E I
Sbjct: 38 ITDPAQHDNPIVFVNDAFLKLTGYTRMEVVGRNCRFLQGPDTEAAAVDRLRAAIRREEDI 97
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
V+LLNY+KDG+ F + V E GR +F A Q+ +
Sbjct: 98 RVDLLNYRKDGSTFQNALYVGPV-RDEAGRVVYFFASQLDV 137
>gi|433774732|ref|YP_007305199.1| PAS domain S-box [Mesorhizobium australicum WSM2073]
gi|433666747|gb|AGB45823.1| PAS domain S-box [Mesorhizobium australicum WSM2073]
Length = 382
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 70/95 (73%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ S ++ DP D P+V+A+DAFL+LTGY+R+EV+G+NCRFL G ++D + QI+ +I
Sbjct: 37 RMSMIITDPRRQDNPIVFANDAFLRLTGYERDEVLGRNCRFLQGPESDKEAIAQIRAAIA 96
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
E +V ILNYRKD S+FWN L+ISP+ N G++
Sbjct: 97 DETDISVDILNYRKDGSTFWNALYISPVSNDKGEM 131
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 68/112 (60%), Gaps = 1/112 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
S ITDP +PIVFA+ FL+++G+ R E++GRN R QGP +++ I +IR AI +E
Sbjct: 39 SMIITDPRRQDNPIVFANDAFLRLTGYERDEVLGRNCRFLQGPESDKEAIAQIRAAIADE 98
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
I V++LNY+KDG+ FW +S V + G F A Q+ + RK N
Sbjct: 99 TDISVDILNYRKDGSTFWNALYISPV-SNDKGEMQFFFASQLDVSDRKLWEN 149
>gi|13786959|pdb|1G28|A Chain A, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
gi|13786960|pdb|1G28|B Chain B, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
gi|13786961|pdb|1G28|C Chain C, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
gi|13786962|pdb|1G28|D Chain D, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
gi|21730387|pdb|1JNU|A Chain A, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
gi|21730388|pdb|1JNU|B Chain B, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
gi|21730389|pdb|1JNU|C Chain C, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
gi|21730390|pdb|1JNU|D Chain D, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
Length = 104
Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 66/94 (70%)
Query: 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQT 311
+SFV+ DP LPD P+++ASD FL+LT Y R EV+G NCRFL G TD + I+++++
Sbjct: 1 KSFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNNCRFLQGRGTDRKAVQLIRDAVKE 60
Query: 312 EQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
++ TV++LNY K +FWNL H+ +R+ +G V
Sbjct: 61 QRDVTVQVLNYTKGGRAFWNLFHLQVMRDENGDV 94
Score = 95.1 bits (235), Expect = 5e-17, Method: Composition-based stats.
Identities = 43/101 (42%), Positives = 66/101 (65%), Gaps = 1/101 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SF ITDP + +PI+FAS FL+++ ++R E++G N R QG T+R+ + IR+A++E+
Sbjct: 2 SFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNNCRFLQGRGTDRKAVQLIRDAVKEQ 61
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
R + V +LNY K G FW LF + V E+G +F+ VQ
Sbjct: 62 RDVTVQVLNYTKGGRAFWNLFHLQ-VMRDENGDVQYFIGVQ 101
>gi|393768622|ref|ZP_10357158.1| histidine kinase [Methylobacterium sp. GXF4]
gi|392725905|gb|EIZ83234.1| histidine kinase [Methylobacterium sp. GXF4]
Length = 524
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 70/107 (65%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + ++ DP PD P+++A+ AFL +TGY E+VG+NCRFL G +TD
Sbjct: 15 SDIFFAAVETTRMPMIVTDPRQPDNPIIFANRAFLAMTGYTPEELVGRNCRFLQGPETDR 74
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ QI+ +I ++ ILNYRK+ SSFWN L +SP+ N++G+++
Sbjct: 75 ETVDQIRTAIAEKREFATEILNYRKNGSSFWNALFVSPVYNSAGELV 121
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 100/200 (50%), Gaps = 18/200 (9%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP +PI+FA+R FL M+G++ E++GRN R QGP T+R T+ +IR AI E+R
Sbjct: 31 VTDPRQPDNPIIFANRAFLAMTGYTPEELVGRNCRFLQGPETDRETVDQIRTAIAEKREF 90
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGG 152
+LNY+K+G+ FW +S V+ G +F Q+ + R+ +E+ G
Sbjct: 91 ATEILNYRKNGSSFWNALFVSPVYNSA-GELVYFFGSQLDVSRRRD--------AEEALG 141
Query: 153 SRLREIVFGSCRREVCSD--SLLDLDRVLALDSDDTGLEIEDSCEASDLEKRKAATAIDN 210
+ G + D +LL + V +D +GLE D+ ++ + A DN
Sbjct: 142 QAQKMEALGQLTGGIAHDFNNLLQV-IVGYVDILASGLEKPDA------DRARLGRATDN 194
Query: 211 ILSVLTHYSQLTGRLVCGKR 230
I + LT +L+ R
Sbjct: 195 IRQAAERATTLTQQLLAFAR 214
>gi|299473575|emb|CBN77970.1| aureochrome 3 [Ectocarpus siliculosus]
Length = 275
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 71/105 (67%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
SL +L +Q+FV+ DP LPD P+V+AS FL+LTGY ++V+G+NCRFL G DTD
Sbjct: 124 SLVKALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKA 183
Query: 302 LYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+++I+ +V + NYR D + FWN I+ +R++ G V+
Sbjct: 184 VEKIRKAIEKGMDTSVCLRNYRVDGAMFWNQFFIAALRDSEGTVI 228
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+AL +F ITDP++ +PIVFAS+GFL+++G++ +++GRN R QGP T+ + + +
Sbjct: 127 KALQTAQQNFVITDPTLPDNPIVFASQGFLELTGYTLDQVLGRNCRFLQGPDTDPKAVEK 186
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
IR+AI + V L NY+ DG FW F ++ + E G ++V VQ +
Sbjct: 187 IRKAIEKGMDTSVCLRNYRVDGAMFWNQFFIAALRDSE-GTVINYVGVQCKV 237
>gi|220920804|ref|YP_002496105.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
ORS 2060]
gi|219945410|gb|ACL55802.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
ORS 2060]
Length = 814
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 64/100 (64%)
Query: 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIK 306
L R +Q +L DPHLPD P+V+A+ AF LTGY ++VG+NCR L G DTD + +I+
Sbjct: 34 LERTRQPMILTDPHLPDNPIVFANAAFQALTGYAEEDLVGRNCRLLQGPDTDPATVARIR 93
Query: 307 ESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+I + ILNYRKD FWN L + P+ + +G+++
Sbjct: 94 AAIAEGREIRASILNYRKDGRPFWNELFVCPVFDEAGRLI 133
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP + +PIVFA+ F ++G++ +++GRN R+ QGP T+ T+ IR AI E R I
Sbjct: 43 LTDPHLPDNPIVFANAAFQALTGYAEEDLVGRNCRLLQGPDTDPATVARIRAAIAEGREI 102
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
++LNY+KDG PFW + VF E GR +F A QV
Sbjct: 103 RASILNYRKDGRPFWNELFVCPVF-DEAGRLINFFASQV 140
>gi|448620191|ref|ZP_21667539.1| HTR-like protein [Haloferax denitrificans ATCC 35960]
gi|445756979|gb|EMA08335.1| HTR-like protein [Haloferax denitrificans ATCC 35960]
Length = 639
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P +TDP + +PIV+A+ F +++G+ R E +GRN R QG T+ +I E+
Sbjct: 162 AMDEAPVGIVLTDPHAADNPIVYANEQFTELTGYGRDEALGRNCRFLQGEATDEASIAEL 221
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
REA+ + P+ LLNY+KDGT FW +++ +F +DG FV Q I RK
Sbjct: 222 REAVEDREPVTTELLNYRKDGTEFWNRVRVAPIF-DDDGGIDFFVGFQDDITPRK 275
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 62/92 (67%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
VL DPH D P+VYA++ F +LTGY R+E +G+NCRFL G TD + +++E+++ +
Sbjct: 170 IVLTDPHAADNPIVYANEQFTELTGYGRDEALGRNCRFLQGEATDEASIAELREAVEDRE 229
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
T +LNYRKD + FWN + ++PI + G +
Sbjct: 230 PVTTELLNYRKDGTEFWNRVRVAPIFDDDGGI 261
>gi|397620892|gb|EJK65981.1| hypothetical protein THAOC_13120 [Thalassiosira oceanica]
Length = 535
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 69/104 (66%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
S +L +Q+FV+ DP LPD P+VYA+ FL LTGY ++V+G+NCRFL G +TD
Sbjct: 390 SFIKALQTAQQNFVVTDPSLPDNPIVYATQGFLNLTGYTLDQVLGRNCRFLQGPETDPKA 449
Query: 302 LYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +I+ +I+ +V +LNYR D ++FWN I+ +R+A G +
Sbjct: 450 VEKIRNAIEEGSDMSVCLLNYRVDGTTFWNQFFIAALRDAGGNI 493
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+AL +F +TDPS+ +PIV+A++GFL ++G++ +++GRN R QGP T+ + + +
Sbjct: 393 KALQTAQQNFVVTDPSLPDNPIVYATQGFLNLTGYTLDQVLGRNCRFLQGPETDPKAVEK 452
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
IR AI E + V LLNY+ DGT FW F ++ G T++V VQ +
Sbjct: 453 IRNAIEEGSDMSVCLLNYRVDGTTFWNQFFIA-ALRDAGGNITNYVGVQCKV 503
>gi|218186238|gb|EEC68665.1| hypothetical protein OsI_37115 [Oryza sativa Indica Group]
Length = 458
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 69/108 (63%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L +Q+FV+ D P+ P++YAS F +TGY EVVG+NCRFL G TD
Sbjct: 123 VSEELRAALSAFQQTFVVSDATRPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTD 182
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I++S+ RILNY+KD + FWNLL I+PI++ G++L
Sbjct: 183 PHEIDKIRQSLANGSNYCGRILNYKKDGTPFWNLLTIAPIKDEDGRLL 230
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 75/129 (58%), Gaps = 5/129 (3%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D + HPI++AS GF M+G++ E++GRN R QG T+ I +I
Sbjct: 130 ALSAFQQTFVVSDATRPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPHEIDKI 189
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV---AVQVPIVSRKHM 139
R+++ +LNYKKDGTPFW L ++ + EDGR F+ A +V +V+ +++
Sbjct: 190 RQSLANGSNYCGRILNYKKDGTPFWNLLTIAPI-KDEDGRLLKFIGFYAAEV-VVALEYL 247
Query: 140 RNSGMSYSE 148
G+ Y +
Sbjct: 248 HCQGIIYRD 256
>gi|295691216|ref|YP_003594909.1| signal transduction histidine kinase [Caulobacter segnis ATCC
21756]
gi|295433119|gb|ADG12291.1| signal transduction histidine kinase [Caulobacter segnis ATCC
21756]
Length = 366
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 66/96 (68%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ + ++ D D P+++A+DAFLKLTGY R+EV+G+NCR L G +T + ++ +I
Sbjct: 32 RMAMIVTDAAQADNPIIFANDAFLKLTGYTRDEVIGRNCRMLQGPETSREAVQKLSAAIA 91
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ V +LNYRKD S+FWN L++SP+RN G+++
Sbjct: 92 AGEDVNVELLNYRKDGSTFWNALYVSPVRNTVGEIV 127
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ +TD + + +PI+FA+ FLK++G++R E+IGRN RM QGP T+R + ++ AI
Sbjct: 34 AMIVTDAAQADNPIIFANDAFLKLTGYTRDEVIGRNCRMLQGPETSREAVQKLSAAIAAG 93
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ V LLNY+KDG+ FW +S V G +F Q+ + +K
Sbjct: 94 EDVNVELLNYRKDGSTFWNALYVSPVRNTV-GEIVYFFGSQLDVTDKK 140
>gi|148252462|ref|YP_001237047.1| histidine kinase [Bradyrhizobium sp. BTAi1]
gi|146404635|gb|ABQ33141.1| putative sensor histidine kinase with PAS/PAC and Response
regulator receiver domains [Bradyrhizobium sp. BTAi1]
Length = 534
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 69/104 (66%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP D P+++A+ AFL++TGY+ NE+VG NCRFL G DTD +
Sbjct: 29 FFAAVETTRMPMIVTDPRQSDNPILFANRAFLEMTGYELNEIVGTNCRFLQGPDTDQETI 88
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
I+ +I + + V ILNYRK+ ++FWN L ISP+ N +G+++
Sbjct: 89 AAIRSAIASRRDIAVEILNYRKNGAAFWNALFISPVYNRAGELV 132
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP S +PI+FA+R FL+M+G+ EI+G N R QGP T++ TI IR AI R I
Sbjct: 42 VTDPRQSDNPILFANRAFLEMTGYELNEIVGTNCRFLQGPDTDQETIAAIRSAIASRRDI 101
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSE 148
V +LNY+K+G FW +S V+ + G +F Q+ VSR+ S + S+
Sbjct: 102 AVEILNYRKNGAAFWNALFISPVYNRA-GELVYFFGSQLD-VSRRRDAESALVQSQ 155
>gi|420243466|ref|ZP_14747390.1| PAS domain S-box [Rhizobium sp. CF080]
gi|398060866|gb|EJL52678.1| PAS domain S-box [Rhizobium sp. CF080]
Length = 375
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 74/123 (60%), Gaps = 8/123 (6%)
Query: 224 RLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNE 283
RLV G P ++ + ++ DP+ D +++ ++AF K+TGY +E
Sbjct: 17 RLVAGHVSEDPFAAAFKAT--------RMPMIVTDPNQSDNTIIFCNEAFRKMTGYSDDE 68
Query: 284 VVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
++G+NCRFL G DTD + +I+E+I Q + ILNYRKD S+FWN + ISP+R+ +G
Sbjct: 69 IIGRNCRFLQGPDTDRETVSKIREAIVAGQDVAIDILNYRKDGSTFWNAVFISPVRDEAG 128
Query: 344 KVL 346
K++
Sbjct: 129 KII 131
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ S + I+F + F KM+G+S EIIGRN R QGP T+R T+ +IREAI + +
Sbjct: 41 VTDPNQSDNTIIFCNEAFRKMTGYSDDEIIGRNCRFLQGPDTDRETVSKIREAIVAGQDV 100
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+++LNY+KDG+ FW +S V E G+ +F A Q+ + K
Sbjct: 101 AIDILNYRKDGSTFWNAVFISPV-RDEAGKIIYFFASQLDFTNVK 144
>gi|149286422|gb|ABR23226.1| hisactophilin C49S mutant/hisactophilin/phototropin PHY3 fusion
protein [Expression vector
pNCO-HISACT-(C49S)-ASLOV1-syn]
Length = 245
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 66/101 (65%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L +Q+FV+ D P P++YAS F +TGY EVVG+NCRFL G TD + +I
Sbjct: 131 ALSAFQQTFVVSDASRPGHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPAEIAKI 190
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
++++ R+LNY+KD ++FWNLL I+PI++ G+VL
Sbjct: 191 RQALANGSNYCGRVLNYKKDGTAFWNLLTIAPIKDEEGRVL 231
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F ++D S GHPI++AS GF M+G++ E++GRN R QG T+ I +I
Sbjct: 131 ALSAFQQTFVVSDASRPGHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPAEIAKI 190
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R+A+ +LNYKKDGT FW L ++ + E+GR F+ +QV +
Sbjct: 191 RQALANGSNYCGRVLNYKKDGTAFWNLLTIAPI-KDEEGRVLKFIGMQVEV 240
>gi|448492502|ref|ZP_21608893.1| signal-transducing histidine kinase/response regulator [Halorubrum
californiensis DSM 19288]
gi|445691117|gb|ELZ43311.1| signal-transducing histidine kinase/response regulator [Halorubrum
californiensis DSM 19288]
Length = 743
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 63/104 (60%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L ++ L DPH D PMVY ++ F LTGY + E +G+NCRFL G DTD +
Sbjct: 395 LQTAIDNAHAPLTLTDPHKEDNPMVYVNEPFEDLTGYTKAEALGRNCRFLQGEDTDPATV 454
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
++ E+I E+ TV I NYRKD + FWN L ++P+ +A G ++
Sbjct: 455 ARLGEAIDNEEPITVEIRNYRKDGTPFWNELRVAPVYDADGDLI 498
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 2/143 (1%)
Query: 7 LIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNG 66
+ EQ R + A+D T+TDP +P+V+ + F ++G+++AE +GRN
Sbjct: 382 ITEQRATERKLGILQTAIDNAHAPLTLTDPHKEDNPMVYVNEPFEDLTGYTKAEALGRNC 441
Query: 67 RMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHF 126
R QG T+ T+ + EAI E PI V + NY+KDGTPFW +++ V+ DG +
Sbjct: 442 RFLQGEDTDPATVARLGEAIDNEEPITVEIRNYRKDGTPFWNELRVAPVYDA-DGDLIRY 500
Query: 127 VAVQVPIVSRKHMRNSGMSYSED 149
+ Q + RK R + + D
Sbjct: 501 LGTQRDVTDRKE-RTQELQHQND 522
>gi|325919171|ref|ZP_08181226.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865]
gi|325550341|gb|EGD21140.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865]
Length = 180
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 63/92 (68%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
+ DPHL D P+V+A+ AFL++TGY EV+G NCRFL G DTD + ++++SI +A
Sbjct: 4 TVTDPHLLDNPIVFANRAFLEMTGYSSEEVIGHNCRFLQGPDTDPANVNEVRDSIANRRA 63
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+LNYRKD S FWN L +SP+ + G+++
Sbjct: 64 FATEVLNYRKDGSPFWNALFVSPVFDDKGELV 95
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 68/111 (61%), Gaps = 1/111 (0%)
Query: 32 TITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91
T+TDP + +PIVFA+R FL+M+G+S E+IG N R QGP T+ + E+R++I R
Sbjct: 4 TVTDPHLLDNPIVFANRAFLEMTGYSSEEVIGHNCRFLQGPDTDPANVNEVRDSIANRRA 63
Query: 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+PFW +S VF + G +F Q+ + R+ ++
Sbjct: 64 FATEVLNYRKDGSPFWNALFVSPVF-DDKGELVYFFGSQLDVSRRRDAEDA 113
>gi|218533250|ref|YP_002424066.1| multi-sensor hybrid histidine kinase [Methylobacterium extorquens
CM4]
gi|218525553|gb|ACK86138.1| multi-sensor hybrid histidine kinase [Methylobacterium extorquens
CM4]
Length = 890
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 66/95 (69%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ V+ +P LPD P+V+ +D+F +LTGY R E+VG+NCRFL G DTD + ++E+I
Sbjct: 46 RMPMVITNPRLPDNPIVFVNDSFCRLTGYSREEIVGRNCRFLQGPDTDPADVTCLQEAIA 105
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
++ + I NYRKD +SFWN L ++P+++A G +
Sbjct: 106 APRSIEIDIRNYRKDGTSFWNRLLMAPVKDARGAL 140
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
IT+P + +PIVF + F +++G+SR EI+GRN R QGP T+ + ++EAI R
Sbjct: 49 MVITNPRLPDNPIVFVNDSFCRLTGYSREEIVGRNCRFLQGPDTDPADVTCLQEAIAAPR 108
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IE+++ NY+KDGT FW M+ V G +F A Q+ + + +
Sbjct: 109 SIEIDIRNYRKDGTSFWNRLLMAPVKDAR-GALAYFFASQLDVTTERE 155
>gi|254500449|ref|ZP_05112600.1| hypothetical protein SADFL11_485 [Labrenzia alexandrii DFL-11]
gi|222436520|gb|EEE43199.1| hypothetical protein SADFL11_485 [Labrenzia alexandrii DFL-11]
Length = 369
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 61/91 (67%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315
+ D P P+VY + AFL+ TGY E VG+NC FL G DTD ++Q++ES++ E A
Sbjct: 23 IADAKTPGRPLVYVNPAFLRQTGYSLEEAVGRNCGFLQGPDTDPHTVFQLRESLEAEMAI 82
Query: 316 TVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
V +LNY+KD + FWN L ISPI+ A+G ++
Sbjct: 83 CVEVLNYKKDGTPFWNALSISPIKTATGDLV 113
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRR 77
+W+ ALD TI D G P+V+ + FL+ +G+S E +GRN QGP T+
Sbjct: 9 VWM-TALDAAQICITIADAKTPGRPLVYVNPAFLRQTGYSLEEAVGRNCGFLQGPDTDPH 67
Query: 78 TIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
T+ ++RE++ E I V +LNYKKDGTPFW +S + G FV Q + R+
Sbjct: 68 TVFQLRESLEAEMAICVEVLNYKKDGTPFWNALSISPI-KTATGDLVAFVGFQTDVTDRR 126
>gi|448304641|ref|ZP_21494577.1| bacterio-opsin activator [Natronorubrum sulfidifaciens JCM 14089]
gi|445590022|gb|ELY44243.1| bacterio-opsin activator [Natronorubrum sulfidifaciens JCM 14089]
Length = 638
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 63/92 (68%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ DP L D P+VY +DA+ ++TGY +EVVG+NCRFL G D+ T + ++ +I E+
Sbjct: 144 ITISDPDLEDNPLVYVNDAYQEMTGYSFDEVVGRNCRFLQGDDSSETAIAEMAAAIDEER 203
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV + NYRKD +SFWN + I+P+R+A G V
Sbjct: 204 PVTVELENYRKDGTSFWNEVTIAPVRDADGTV 235
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P TI+DP + +P+V+ + + +M+G+S E++GRN R QG ++ I E+
Sbjct: 136 AINEAPVGITISDPDLEDNPLVYVNDAYQEMTGYSFDEVVGRNCRFLQGDDSSETAIAEM 195
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
AI EERP+ V L NY+KDGT FW ++ V DG TH+V Q + +RK
Sbjct: 196 AAAIDEERPVTVELENYRKDGTSFWNEVTIAPVRDA-DGTVTHYVGFQNDVTARK 249
>gi|440745642|ref|ZP_20924932.1| histidine kinase [Pseudomonas syringae BRIP39023]
gi|440372275|gb|ELQ09083.1| histidine kinase [Pseudomonas syringae BRIP39023]
Length = 502
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 64/93 (68%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ DP+ PD P+++A+ AFL++TGY E++G NCRFL G +TD V+ I+++I
Sbjct: 3 MIVTDPNRPDNPIIFANRAFLEMTGYASEEIIGSNCRFLQGPETDRAVVKSIRDAIDERV 62
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ ILNYRKD S+FWN L ISP+ N +G ++
Sbjct: 63 DISTEILNYRKDGSTFWNALFISPVYNDAGDLI 95
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+FA+R FL+M+G++ EIIG N R QGP T+R + IR+AI E I
Sbjct: 5 VTDPNRPDNPIIFANRAFLEMTGYASEEIIGSNCRFLQGPETDRAVVKSIRDAIDERVDI 64
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+
Sbjct: 65 STEILNYRKDGSTFWNALFISPVY-NDAGDLIYFFASQLDISRRR 108
>gi|299115347|emb|CBN74167.1| aureochrome 2 [Ectocarpus siliculosus]
Length = 441
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 72/110 (65%), Gaps = 3/110 (2%)
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
GF+ L +L + SF + DP +PD P+VYASD F++LTGYDR +V+G+NCRFL G D
Sbjct: 268 GFL---LVKALQSSQPSFCVTDPQMPDNPIVYASDTFIELTGYDRAQVLGRNCRFLQGPD 324
Query: 297 TDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
TD + +I++ I+ +V + Y+ D + FWN + ++ +RN+ K++
Sbjct: 325 TDPDAVAKIRKGIEEGSDTSVYLRQYKADGTVFWNHVFVAALRNSEHKII 374
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+AL SF +TDP + +PIV+AS F++++G+ RA+++GRN R QGP T+ + +
Sbjct: 273 KALQSSQPSFCVTDPQMPDNPIVYASDTFIELTGYDRAQVLGRNCRFLQGPDTDPDAVAK 332
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
IR+ I E V L YK DGT FW ++ + E + ++V +Q P+
Sbjct: 333 IRKGIEEGSDTSVYLRQYKADGTVFWNHVFVAALRNSEH-KIINYVGIQHPL 383
>gi|404403342|ref|ZP_10994926.1| histidine kinase [Pseudomonas fuscovaginae UPB0736]
Length = 519
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 230 RCSLPGMGFISSSLYISLGRIKQSFVLI-DPHLPDMPMVYASDAFLKLTGYDRNEVVGQN 288
R L G+ L+ + S +++ DP PD P+++A+ AFL L G++R+EV+G+N
Sbjct: 4 RIDLAGLSSNRKDLFFAAMETSHSAMIVTDPAQPDNPIIFANQAFLSLVGFERDEVIGRN 63
Query: 289 CRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
CRFL G +TD VL Q++ ++ V +LNYRKD S+FWN L I P+ N G+++
Sbjct: 64 CRFLQGPETDKRVLQQVQLAVLHHHEVCVEVLNYRKDGSAFWNELFIFPLFNERGQLV 121
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 77/127 (60%), Gaps = 5/127 (3%)
Query: 13 NNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72
+NR L+ A++ + +TDP+ +PI+FA++ FL + GF R E+IGRN R QGP
Sbjct: 12 SNRKDLFF-AAMETSHSAMIVTDPAQPDNPIIFANQAFLSLVGFERDEVIGRNCRFLQGP 70
Query: 73 RTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFW-MLFKMSLVFGKEDGRATHFVAVQV 131
T++R + +++ A+ + V +LNY+KDG+ FW LF L E G+ +F A Q+
Sbjct: 71 ETDKRVLQQVQLAVLHHHEVCVEVLNYRKDGSAFWNELFIFPLF--NERGQLVYFFASQL 128
Query: 132 PIVSRKH 138
VSR+H
Sbjct: 129 D-VSRRH 134
>gi|116255520|ref|YP_771353.1| hypothetical protein pRL110320 [Rhizobium leguminosarum bv. viciae
3841]
gi|115260168|emb|CAK03271.1| putative regulator [Rhizobium leguminosarum bv. viciae 3841]
Length = 345
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 64/102 (62%)
Query: 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQ 304
I+ R + V+ D PD+P+V A+ AFL+LTGY EV+G+NCRFL G T + +
Sbjct: 31 IAFERTRMPMVVTDGRKPDLPIVLANKAFLELTGYPAQEVLGRNCRFLQGPATSPIAVAE 90
Query: 305 IKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
I+ +I E+ +V ILNY+K FWN LH+SP+ GK+L
Sbjct: 91 IRAAIAGEREVSVEILNYKKSGEQFWNRLHLSPVHGDDGKIL 132
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+TD PIV A++ FL+++G+ E++GRN R QGP T+ + EIR AI ER
Sbjct: 40 MVVTDGRKPDLPIVLANKAFLELTGYPAQEVLGRNCRFLQGPATSPIAVAEIRAAIAGER 99
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+ V +LNYKK G FW +S V G +DG+ +F Q+
Sbjct: 100 EVSVEILNYKKSGEQFWNRLHLSPVHG-DDGKILYFFGSQI 139
>gi|257051404|ref|YP_003129237.1| bacterio-opsin activator [Halorhabdus utahensis DSM 12940]
gi|256690167|gb|ACV10504.1| putative PAS/PAC sensor protein [Halorhabdus utahensis DSM 12940]
Length = 680
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 60/92 (65%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ D PD P++Y +D+F+++TGY++ + +G NCRFL G TD +++E++ EQ
Sbjct: 164 ITIADATAPDKPLIYVNDSFVEMTGYEKEDAIGVNCRFLQGEGTDAETTLELREAVMDEQ 223
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
A V + NYR D S+FWN L ISPIR+ G V
Sbjct: 224 AAAVELRNYRADGSTFWNNLEISPIRDDDGTV 255
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALDE P TI D + P+++ + F++M+G+ + + IG N R QG T+ T +E+
Sbjct: 156 ALDEAPVGITIADATAPDKPLIYVNDSFVEMTGYEKEDAIGVNCRFLQGEGTDAETTLEL 215
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
REA+ +E+ V L NY+ DG+ FW ++S + +DG T+FV Q I RK
Sbjct: 216 REAVMDEQAAAVELRNYRADGSTFWNNLEISPIR-DDDGTVTNFVGFQQDITERKE 270
>gi|254413183|ref|ZP_05026954.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196179803|gb|EDX74796.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1145
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 64/88 (72%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTV 317
DPH PD P+++ + F +LTGY +E++G+NCRFL G D++ L +++++I T++ C +
Sbjct: 358 DPHQPDNPIIFVNSGFERLTGYSASELLGRNCRFLQGDDSNQAQLEEVRQAIATKKDCQI 417
Query: 318 RILNYRKDKSSFWNLLHISPIRNASGKV 345
+ NYRKD S FWN L+ISP+RN+ G +
Sbjct: 418 TLRNYRKDGSVFWNDLYISPVRNSQGTL 445
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ A++ + I+DP +PI+F + GF +++G+S +E++GRN R QG +N+ +
Sbjct: 343 LESAVNASSNGILISDPHQPDNPIIFVNSGFERLTGYSASELLGRNCRFLQGDDSNQAQL 402
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
E+R+AI ++ ++ L NY+KDG+ FW +S V + G THF+ VQ + ++K
Sbjct: 403 EEVRQAIATKKDCQITLRNYRKDGSVFWNDLYISPVRNSQ-GTLTHFLGVQTDVTAQK 459
>gi|409406269|ref|ZP_11254731.1| PAS/PAC sensor hybrid histidine kinase [Herbaspirillum sp. GW103]
gi|386434818|gb|EIJ47643.1| PAS/PAC sensor hybrid histidine kinase [Herbaspirillum sp. GW103]
Length = 546
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 70/103 (67%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ PD P+++ ++AF+ +TGY R EVVG+NCRFL G +TD +V+
Sbjct: 39 FFAAVEMTRMPMIVSDPNKPDNPIIFVNNAFMNMTGYSRAEVVGKNCRFLQGPETDRSVV 98
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
Q+++++ + +LNYRK+ S+FWN L ISP+ + G++
Sbjct: 99 AQVRQAVAERREMATELLNYRKNGSTFWNALFISPVYDQRGEL 141
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
++DP+ +PI+F + F+ M+G+SRAE++G+N R QGP T+R + ++R+A+ E R +
Sbjct: 52 VSDPNKPDNPIIFVNNAFMNMTGYSRAEVVGKNCRFLQGPETDRSVVAQVRQAVAERREM 111
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
LLNY+K+G+ FW +S V+ + G +F + Q+ I R+
Sbjct: 112 ATELLNYRKNGSTFWNALFISPVYDQR-GELKYFFSSQLDISRRR 155
>gi|424875649|ref|ZP_18299311.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae WSM1455]
gi|393171350|gb|EJC71397.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae WSM1455]
Length = 345
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 64/102 (62%)
Query: 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQ 304
I+ R + V+ D PD+P+V A+ AFL+LTGY EV+G+NCRFL G T + +
Sbjct: 31 IAFERTRMPMVVTDGRKPDLPIVLANKAFLELTGYAAQEVLGRNCRFLQGPATSPIAVAE 90
Query: 305 IKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
I+ +I E+ +V ILNY+K FWN LH+SP+ GK+L
Sbjct: 91 IRAAIAGEREVSVEILNYKKSGEQFWNRLHLSPVHGDDGKIL 132
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+TD PIV A++ FL+++G++ E++GRN R QGP T+ + EIR AI ER
Sbjct: 40 MVVTDGRKPDLPIVLANKAFLELTGYAAQEVLGRNCRFLQGPATSPIAVAEIRAAIAGER 99
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+ V +LNYKK G FW +S V G +DG+ +F Q+
Sbjct: 100 EVSVEILNYKKSGEQFWNRLHLSPVHG-DDGKILYFFGSQI 139
>gi|448503726|ref|ZP_21613355.1| HTR-like protein [Halorubrum coriense DSM 10284]
gi|445691927|gb|ELZ44110.1| HTR-like protein [Halorubrum coriense DSM 10284]
Length = 594
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 63/100 (63%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + DP D PMVY +D F+++TGYDR E +G NCRFL G DT+ + ++
Sbjct: 263 ALDEAPVGITVTDPEQEDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEASVQEL 322
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+++I + TV +LNYRKD + FWN + I+PI +A G V
Sbjct: 323 RDAIDADDPTTVELLNYRKDGTEFWNRVSIAPICDADGSV 362
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALDE P T+TDP +P+V+ + F++M+G+ R E IG N R QGP T ++ E+
Sbjct: 263 ALDEAPVGITVTDPEQEDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEASVQEL 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
R+AI + P V LLNY+KDGT FW ++ + DG TH+V Q I K
Sbjct: 323 RDAIDADDPTTVELLNYRKDGTEFWNRVSIAPICDA-DGSVTHWVGFQEDITEFKQ 377
>gi|170747057|ref|YP_001753317.1| signal transduction histidine kinase [Methylobacterium
radiotolerans JCM 2831]
gi|170653579|gb|ACB22634.1| signal transduction histidine kinase [Methylobacterium
radiotolerans JCM 2831]
Length = 334
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 62/90 (68%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ D PD P+ +A+DAFL TGY +E+VG+NCR L G TD + + +I+ +++ +
Sbjct: 1 MVITDARAPDNPIAWANDAFLTATGYAADEIVGRNCRMLQGPATDRSTVQRIRSAVEAAE 60
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+V +LNYRKD SSFWN + I+P+R+A G
Sbjct: 61 PISVELLNYRKDGSSFWNAMTITPVRDAEG 90
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
ITD +PI +A+ FL +G++ EI+GRN RM QGP T+R T+ IR A+
Sbjct: 1 MVITDARAPDNPIAWANDAFLTATGYAADEIVGRNCRMLQGPATDRSTVQRIRSAVEAAE 60
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
PI V LLNY+KDG+ FW ++ V E G A +F A Q + M
Sbjct: 61 PISVELLNYRKDGSSFWNAMTITPVRDAE-GLA-YFYAAQADMTHVHQM 107
>gi|424891967|ref|ZP_18315547.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|424893803|ref|ZP_18317383.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393183248|gb|EJC83285.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393185084|gb|EJC85121.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 345
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 65/102 (63%)
Query: 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQ 304
I+ R + V+ D PD+P+V A+ +FL+LTGY +EV+G+NCRFL G T + +
Sbjct: 31 IAFERTRMPMVVTDARRPDLPIVLANKSFLELTGYSADEVLGRNCRFLQGPATSPIAVAE 90
Query: 305 IKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
I+ I E+ +V ILNY+K+ FWN LH+SPI G++L
Sbjct: 91 IRAGIADEREASVEILNYKKNGEPFWNRLHLSPIHGDDGRIL 132
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+TD PIV A++ FL+++G+S E++GRN R QGP T+ + EIR I +ER
Sbjct: 40 MVVTDARRPDLPIVLANKSFLELTGYSADEVLGRNCRFLQGPATSPIAVAEIRAGIADER 99
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
V +LNYKK+G PFW +S + G +DGR +F Q+
Sbjct: 100 EASVEILNYKKNGEPFWNRLHLSPIHG-DDGRILYFFGSQI 139
>gi|424917421|ref|ZP_18340785.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM597]
gi|392853597|gb|EJB06118.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM597]
Length = 345
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 64/102 (62%)
Query: 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQ 304
++ R + V+ D PD+P+V A+ +FL LTGY +EVVG+NCRFL G T + +
Sbjct: 31 VAFERTRMPMVVTDARKPDLPIVLANKSFLDLTGYAADEVVGRNCRFLQGPATSPIAVAE 90
Query: 305 IKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
I+ SI E+ +V ILNY+K FWN LH+SPI G++L
Sbjct: 91 IRASIAEERDVSVEILNYKKSGEPFWNRLHLSPIHGDDGRIL 132
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+TD PIV A++ FL ++G++ E++GRN R QGP T+ + EIR +I EER
Sbjct: 40 MVVTDARKPDLPIVLANKSFLDLTGYAADEVVGRNCRFLQGPATSPIAVAEIRASIAEER 99
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+ V +LNYKK G PFW +S + G +DGR +F Q+
Sbjct: 100 DVSVEILNYKKSGEPFWNRLHLSPIHG-DDGRILYFFGSQI 139
>gi|448508777|ref|ZP_21615595.1| HTR-like protein [Halorubrum distributum JCM 9100]
gi|448517673|ref|ZP_21617247.1| HTR-like protein [Halorubrum distributum JCM 10118]
gi|445697088|gb|ELZ49162.1| HTR-like protein [Halorubrum distributum JCM 9100]
gi|445705888|gb|ELZ57776.1| HTR-like protein [Halorubrum distributum JCM 10118]
Length = 596
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 64/100 (64%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + DP D PMVY +D F+++TGYDR E +G NCRFL G DT+ + +
Sbjct: 263 ALDEAPVGITITDPAREDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEESVQAL 322
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+++I E++ +V +LNYRKD + FWN + I+PI +A G V
Sbjct: 323 RDAIDAEESTSVELLNYRKDGTEFWNRVSIAPICDADGAV 362
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALDE P TITDP+ +P+V+ + F++M+G+ R E IG N R QGP T ++ +
Sbjct: 263 ALDEAPVGITITDPAREDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEESVQAL 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
R+AI E V LLNY+KDGT FW ++ + DG TH+V Q I + K
Sbjct: 323 RDAIDAEESTSVELLNYRKDGTEFWNRVSIAPIC-DADGAVTHWVGFQEDITAFKE 377
>gi|399066184|ref|ZP_10748269.1| PAS domain S-box [Novosphingobium sp. AP12]
gi|398028504|gb|EJL22012.1| PAS domain S-box [Novosphingobium sp. AP12]
Length = 470
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
IT+P + +PIVF +R F+ ++GF R+E+IGRN R QGPRT++ + +REAI
Sbjct: 3 MVITNPLLPDNPIVFVNRAFISLTGFERSEVIGRNCRFLQGPRTDKSQVARMREAITSRV 62
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
PIE++LLNY+K+GT FW +S VF +DG ++ A Q
Sbjct: 63 PIELDLLNYRKNGTHFWNRLLVSPVFA-DDGNLLYYFASQ 101
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 64/93 (68%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ +P LPD P+V+ + AF+ LTG++R+EV+G+NCRFL G TD + + +++E+I +
Sbjct: 3 MVITNPLLPDNPIVFVNRAFISLTGFERSEVIGRNCRFLQGPRTDKSQVARMREAITSRV 62
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +LNYRK+ + FWN L +SP+ G +L
Sbjct: 63 PIELDLLNYRKNGTHFWNRLLVSPVFADDGNLL 95
>gi|365882894|ref|ZP_09422078.1| putative sensor histidine kinase with PAS/PAC and Response
regulator receiver domains [Bradyrhizobium sp. ORS 375]
gi|365288600|emb|CCD94609.1| putative sensor histidine kinase with PAS/PAC and Response
regulator receiver domains [Bradyrhizobium sp. ORS 375]
Length = 534
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 67/104 (64%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP D P+++A+ AFL++TGYD +E+VG NCRFL G DTD +
Sbjct: 29 FFAAVETTRMPMIVTDPRQNDNPILFANRAFLEMTGYDLSEIVGSNCRFLQGPDTDRDTI 88
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
++ +I Q V ILNYRK+ S+FWN L ISP+ N G+++
Sbjct: 89 DAVRTAIANRQDIAVEILNYRKNGSAFWNALFISPVYNRDGELV 132
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 72/116 (62%), Gaps = 2/116 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP + +PI+FA+R FL+M+G+ +EI+G N R QGP T+R TI +R AI + I
Sbjct: 42 VTDPRQNDNPILFANRAFLEMTGYDLSEIVGSNCRFLQGPDTDRDTIDAVRTAIANRQDI 101
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSE 148
V +LNY+K+G+ FW +S V+ + DG +F Q+ VSR+ S + S+
Sbjct: 102 AVEILNYRKNGSAFWNALFISPVYNR-DGELVYFFGSQLD-VSRRRDAESALVQSQ 155
>gi|448579150|ref|ZP_21644427.1| bacterio-opsin activator [Haloferax larsenii JCM 13917]
gi|445723829|gb|ELZ75465.1| bacterio-opsin activator [Haloferax larsenii JCM 13917]
Length = 661
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P TI+D S+ HP+V+A+ F M+G++ E +GRN R QG +TN+ + E+
Sbjct: 136 AMDEAPVGITISDGSLPDHPLVYANDAFESMTGYTIEEALGRNCRYLQGDKTNQERVAEL 195
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R AI E V LLNY++DG+ FW ++ + G DG TH+V Q I R +
Sbjct: 196 RRAIDAEESASVELLNYRRDGSTFWNRVDIAPLPGP-DGSVTHYVGFQTDITERVRAEQA 254
Query: 143 GMSYS 147
Y+
Sbjct: 255 AERYA 259
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 59/88 (67%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTV 317
D LPD P+VYA+DAF +TGY E +G+NCR+L G T+ + +++ +I E++ +V
Sbjct: 148 DGSLPDHPLVYANDAFESMTGYTIEEALGRNCRYLQGDKTNQERVAELRRAIDAEESASV 207
Query: 318 RILNYRKDKSSFWNLLHISPIRNASGKV 345
+LNYR+D S+FWN + I+P+ G V
Sbjct: 208 ELLNYRRDGSTFWNRVDIAPLPGPDGSV 235
>gi|325276367|ref|ZP_08142143.1| histidine kinase [Pseudomonas sp. TJI-51]
gi|324098494|gb|EGB96564.1| histidine kinase [Pseudomonas sp. TJI-51]
Length = 382
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 68/104 (65%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ D P+++A+ AFL +TGY+ E++G+NCRFL G +TDT V+
Sbjct: 30 FFAAVETTRMPMIVTDPNRDDNPIIFANRAFLDMTGYELAEILGRNCRFLQGPETDTEVV 89
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+++SI+ ILNYRKD SSFWN L ISPI N G ++
Sbjct: 90 ATLRDSIEQRVDIATEILNYRKDGSSFWNALFISPIFNERGDLI 133
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+FA+R FL M+G+ AEI+GRN R QGP T+ + +R++I + I
Sbjct: 43 VTDPNRDDNPIIFANRAFLDMTGYELAEILGRNCRFLQGPETDTEVVATLRDSIEQRVDI 102
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S +F + HF A Q+ + R+ ++
Sbjct: 103 ATEILNYRKDGSSFWNALFISPIFNERGDLIYHF-ASQLDVSRRRDAEDA 151
>gi|410090959|ref|ZP_11287539.1| histidine kinase [Pseudomonas viridiflava UASWS0038]
gi|409761826|gb|EKN46878.1| histidine kinase [Pseudomonas viridiflava UASWS0038]
Length = 503
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 63/93 (67%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ DP+ D P+++A+ AFL++TGY E++G NCRFL G +TD V+ I+++I
Sbjct: 3 MIVTDPNSEDNPIIFANKAFLEMTGYASEEIIGSNCRFLQGPETDRAVVQTIRDAIHERN 62
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ ILNYRKD SSFWN L ISP+ N +G ++
Sbjct: 63 DISTEILNYRKDGSSFWNALFISPVYNDAGDLI 95
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+FA++ FL+M+G++ EIIG N R QGP T+R + IR+AI E I
Sbjct: 5 VTDPNSEDNPIIFANKAFLEMTGYASEEIIGSNCRFLQGPETDRAVVQTIRDAIHERNDI 64
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+
Sbjct: 65 STEILNYRKDGSSFWNALFISPVY-NDAGDLIYFFASQLDISRRR 108
>gi|448489426|ref|ZP_21607649.1| HTR-like protein [Halorubrum californiensis DSM 19288]
gi|445694798|gb|ELZ46916.1| HTR-like protein [Halorubrum californiensis DSM 19288]
Length = 594
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 65/100 (65%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + +P D PMVY +D F+++TGYDR E +G NCRFL G DT+ + +
Sbjct: 263 ALDEAPVGITITNPAREDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEASVQAL 322
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+++I E++ +V +LNYRKD + FWN + I+PI +A+G V
Sbjct: 323 RDAIDAEESTSVELLNYRKDGTEFWNRVSIAPISDANGTV 362
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALDE P TIT+P+ +P+V+ + F++M+G+ R E IG N R QGP T ++ +
Sbjct: 263 ALDEAPVGITITNPAREDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEASVQAL 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
R+AI E V LLNY+KDGT FW ++ + +G TH+V Q I + K
Sbjct: 323 RDAIDAEESTSVELLNYRKDGTEFWNRVSIAPI-SDANGTVTHWVGFQEDITAFKE 377
>gi|420240016|ref|ZP_14744286.1| PAS domain S-box [Rhizobium sp. CF080]
gi|398077991|gb|EJL68931.1| PAS domain S-box [Rhizobium sp. CF080]
Length = 349
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 63/97 (64%)
Query: 249 RIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKES 308
R + V+ D D P+V A+DAFL LTGY +E++G+NCR L G T T L QI+ +
Sbjct: 35 RTRMPMVVSDARQSDFPIVLANDAFLDLTGYSADEILGRNCRLLQGEATSRTALAQIRAA 94
Query: 309 IQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
I ++ T+ ILNY+KD + FWN LH+SPI + G++
Sbjct: 95 ITQQREATIEILNYKKDGTPFWNQLHLSPIHDVQGEL 131
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
++D S PIV A+ FL ++G+S EI+GRN R+ QG T+R + +IR AI ++R
Sbjct: 40 MVVSDARQSDFPIVLANDAFLDLTGYSADEILGRNCRLLQGEATSRTALAQIRAAITQQR 99
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+ +LNYKKDGTPFW +S + + G ++ A Q+ +
Sbjct: 100 EATIEILNYKKDGTPFWNQLHLSPIHDVQ-GELAYYFASQIDV 141
>gi|440733760|ref|ZP_20913441.1| histidine kinase [Xanthomonas translucens DAR61454]
gi|440358988|gb|ELP96317.1| histidine kinase [Xanthomonas translucens DAR61454]
Length = 542
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 65/107 (60%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + ++ DP D P+V+ + AFL++TGY E++G NCRFL G DTD
Sbjct: 27 SDIFFAAVETTRMPMIVTDPRQADNPIVFVNRAFLEMTGYSSEELLGNNCRFLQGPDTDR 86
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ ++E+I V ILNYRKD SSFWN L ISP+ N G+++
Sbjct: 87 DTVDSVREAIAARSEVAVEILNYRKDGSSFWNALFISPVYNEHGELV 133
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP + +PIVF +R FL+M+G+S E++G N R QGP T+R T+ +REAI +
Sbjct: 43 VTDPRQADNPIVFVNRAFLEMTGYSSEELLGNNCRFLQGPDTDRDTVDSVREAIAARSEV 102
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
V +LNY+KDG+ FW +S V+ E G ++ Q+ + R+ ++
Sbjct: 103 AVEILNYRKDGSSFWNALFISPVY-NEHGELVYYFGSQLDVSRRRDTEDA 151
>gi|433676226|ref|ZP_20508362.1| Blue-light-activated protein Includes: RecName:
Full=Blue-light-activated histidine kinase [Xanthomonas
translucens pv. translucens DSM 18974]
gi|430818652|emb|CCP38640.1| Blue-light-activated protein Includes: RecName:
Full=Blue-light-activated histidine kinase [Xanthomonas
translucens pv. translucens DSM 18974]
Length = 542
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 65/107 (60%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + ++ DP D P+V+ + AFL++TGY E++G NCRFL G DTD
Sbjct: 27 SDIFFAAVETTRMPMIVTDPRQADNPIVFVNRAFLEMTGYSSEELLGNNCRFLQGPDTDR 86
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ ++E+I V ILNYRKD SSFWN L ISP+ N G+++
Sbjct: 87 DTVDSVREAIAARSEVAVEILNYRKDGSSFWNALFISPVYNEHGELV 133
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP + +PIVF +R FL+M+G+S E++G N R QGP T+R T+ +REAI +
Sbjct: 43 VTDPRQADNPIVFVNRAFLEMTGYSSEELLGNNCRFLQGPDTDRDTVDSVREAIAARSEV 102
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
V +LNY+KDG+ FW +S V+ E G ++ Q+ + R+ ++
Sbjct: 103 AVEILNYRKDGSSFWNALFISPVY-NEHGELVYYFGSQLDVSRRRDTEDA 151
>gi|297582818|ref|YP_003698598.1| putative PAS/PAC sensor protein [Bacillus selenitireducens MLS10]
gi|297141275|gb|ADH98032.1| putative PAS/PAC sensor protein [Bacillus selenitireducens MLS10]
Length = 256
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
F I+DP + +PI++A+RGF++++G+S E+IG N R QG T+ +T+ +REAIR
Sbjct: 19 FIISDPDLPDNPIIYANRGFMELTGYSTDEVIGYNCRFLQGDDTSPQTVSILREAIRLME 78
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSED 149
P+ V +LNYKK G PFW L + ++ +E+ + +FV +Q I K SY ++
Sbjct: 79 PVSVEILNYKKSGEPFWNLLHIDPIYLEEEDKY-YFVGIQKDITEIKQAEQKIASYHKE 136
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 62/92 (67%)
Query: 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIK 306
L + + F++ DP LPD P++YA+ F++LTGY +EV+G NCRFL G DT + ++
Sbjct: 12 LEKTQLVFIISDPDLPDNPIIYANRGFMELTGYSTDEVIGYNCRFLQGDDTSPQTVSILR 71
Query: 307 ESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
E+I+ + +V ILNY+K FWNLLHI PI
Sbjct: 72 EAIRLMEPVSVEILNYKKSGEPFWNLLHIDPI 103
>gi|308067316|ref|YP_003868921.1| GAF domain containing protein [Paenibacillus polymyxa E681]
gi|305856595|gb|ADM68383.1| GAF domain containing protein [Paenibacillus polymyxa E681]
Length = 825
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 68/111 (61%), Gaps = 2/111 (1%)
Query: 238 FISSSLYI--SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295
I+S+ ++ +L V+ D PD+P++YA+ F KLTGY R E++G NCRFL G
Sbjct: 194 LIASNAWLMKALEHSSAGVVITDATDPDLPIIYANPGFTKLTGYAREEIIGHNCRFLQGP 253
Query: 296 DTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
TD L +++ I+ + V +LNYRKD +SFWN L I+P+ N G V+
Sbjct: 254 GTDAAALAKVRRGIREQAMTRVELLNYRKDGTSFWNELLINPVDNEQGDVI 304
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 79/145 (54%), Gaps = 3/145 (2%)
Query: 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRT 78
W+ +AL+ ITD + PI++A+ GF K++G++R EIIG N R QGP T+
Sbjct: 200 WLMKALEHSSAGVVITDATDPDLPIIYANPGFTKLTGYAREEIIGHNCRFLQGPGTDAAA 259
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+ ++R IRE+ V LLNY+KDGT FW ++ V E G HFV +Q I SRK
Sbjct: 260 LAKVRRGIREQAMTRVELLNYRKDGTSFWNELLINPV-DNEQGDVIHFVGIQNDISSRKA 318
Query: 139 MRNS--GMSYSEDGGGSRLREIVFG 161
+ Y +D L +I++
Sbjct: 319 AEQALENAFYEQDHLLQSLPDIIYA 343
>gi|242345215|dbj|BAH80321.1| aureochrome2-like protein [Fucus distichus subsp. evanescens]
Length = 409
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 84/148 (56%), Gaps = 3/148 (2%)
Query: 199 LEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLID 258
+ R A + + I S ++H + L F+ L +L + SF + D
Sbjct: 205 INTRCANNSAEIIRSCVSHVPSMVADCANQATALLEQSDFL---LVKALQSSQPSFCVTD 261
Query: 259 PHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVR 318
P LPD P+VYAS+ F++LTGYDR++V+G+NCRFL G DTD + +I++ I+ + +V
Sbjct: 262 PQLPDNPIVYASNTFIELTGYDRSQVLGRNCRFLQGPDTDPDAVAKIRKGIEEGKDTSVF 321
Query: 319 ILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ Y+ D + FWN + ++ +RN K++
Sbjct: 322 LRQYKADGTVFWNHVFVAALRNNDHKII 349
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 68/113 (60%), Gaps = 3/113 (2%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+AL SF +TDP + +PIV+AS F++++G+ R++++GRN R QGP T+ + +
Sbjct: 248 KALQSSQPSFCVTDPQLPDNPIVYASNTFIELTGYDRSQVLGRNCRFLQGPDTDPDAVAK 307
Query: 82 IREAIREERPIEVNLLNYKKDGTPFW-MLFKMSLVFGKEDGRATHFVAVQVPI 133
IR+ I E + V L YK DGT FW +F +L D + ++V +Q P+
Sbjct: 308 IRKGIEEGKDTSVFLRQYKADGTVFWNHVFVAAL--RNNDHKIINYVGIQHPL 358
>gi|453328516|dbj|GAC89226.1| PAS/PAC sensor hybrid histidine kinase [Gluconobacter thailandicus
NBRC 3255]
Length = 578
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 78/130 (60%), Gaps = 8/130 (6%)
Query: 217 HYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKL 276
H++Q T S P + S+ + ++ + +L DP LPD P+ +A++AFL L
Sbjct: 36 HWAQTT--------ISDPTLENRSNVFFAAVEMTRMPMILADPRLPDCPIAFANNAFLDL 87
Query: 277 TGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHIS 336
TGY+ +E+VG+NCRFL G TD + Q++E+I + + ILNYR++ + FWN + +
Sbjct: 88 TGYEADEIVGRNCRFLQGAGTDPNDVRQLREAIAECKPVALEILNYRRNGTPFWNAIFMG 147
Query: 337 PIRNASGKVL 346
P+ + G+++
Sbjct: 148 PVFDEQGELI 157
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+ DP + PI FA+ FL ++G+ EI+GRN R QG T+ + ++REAI E +P+
Sbjct: 67 LADPRLPDCPIAFANNAFLDLTGYEADEIVGRNCRFLQGAGTDPNDVRQLREAIAECKPV 126
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ +LNY+++GTPFW M VF E G +F A Q+ + R+
Sbjct: 127 ALEILNYRRNGTPFWNAIFMGPVF-DEQGELIYFFASQLDVSKRR 170
>gi|312961435|ref|ZP_07775938.1| PAS [Pseudomonas fluorescens WH6]
gi|311284330|gb|EFQ62908.1| PAS [Pseudomonas fluorescens WH6]
Length = 519
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 65/94 (69%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
+ ++ DP PD P+++A+ AFL LTGY+++EV+G+NCRFL G TD L ++ +++
Sbjct: 28 AMIVTDPAQPDNPIIFANQAFLALTGYEQDEVIGRNCRFLQGPHTDKDALRHVQRALERH 87
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
V ++NYRKD S+FWN L ++P+ N G+++
Sbjct: 88 HEVCVEVINYRKDGSTFWNELFLAPLFNERGQLV 121
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ +TDP+ +PI+FA++ FL ++G+ + E+IGRN R QGP T++ + ++ A+
Sbjct: 28 AMIVTDPAQPDNPIIFANQAFLALTGYEQDEVIGRNCRFLQGPHTDKDALRHVQRALERH 87
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+ V ++NY+KDG+ FW ++ +F E G+ +F A Q+ VSR+H
Sbjct: 88 HEVCVEVINYRKDGSTFWNELFLAPLF-NERGQLVYFFASQLD-VSRRH 134
>gi|161367346|gb|ABX71079.1| putative phototropin [synthetic construct]
Length = 115
Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats.
Identities = 43/99 (43%), Positives = 65/99 (65%)
Query: 248 GRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKE 307
G +F + D PD P+VYASD FL++TGY EV+G NCRFL G T+ + +++E
Sbjct: 1 GAFDHTFTVCDATKPDCPIVYASDGFLRMTGYAAAEVIGYNCRFLQGEKTNKNDVRELRE 60
Query: 308 SIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+I+ +VR+LNY+KD + FWN L ++P++ A G V+
Sbjct: 61 AIKNGDRWSVRLLNYKKDGTPFWNYLVVAPVKLADGTVV 99
Score = 97.1 bits (240), Expect = 1e-17, Method: Composition-based stats.
Identities = 47/108 (43%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+FT+ D + PIV+AS GFL+M+G++ AE+IG N R QG +TN+ + E+REAI+
Sbjct: 6 TFTVCDATKPDCPIVYASDGFLRMTGYAAAEVIGYNCRFLQGEKTNKNDVRELREAIKNG 65
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
V LLNYKKDGTPFW ++ V DG ++ VQ + K
Sbjct: 66 DRWSVRLLNYKKDGTPFWNYLVVAPV-KLADGTVVKYIGVQTDVTEVK 112
>gi|300868645|ref|ZP_07113257.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
gi|300333339|emb|CBN58449.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
Length = 1140
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 63/92 (68%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ D LPD P++Y + AF ++TGY + E+ G+NCRFL G DTD L +++ +++ +
Sbjct: 72 IVIADARLPDCPIIYCNPAFERITGYSQAEIEGKNCRFLQGPDTDPAALEELRNALREGR 131
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
AC V + NYRKD + FWN L ISP+R+ G++
Sbjct: 132 ACEVVLKNYRKDGTHFWNKLAISPVRDKKGQL 163
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+ I D + PI++ + F +++G+S+AEI G+N R QGP T+ + E+R A+RE
Sbjct: 70 NGIVIADARLPDCPIIYCNPAFERITGYSQAEIEGKNCRFLQGPDTDPAALEELRNALRE 129
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R EV L NY+KDGT FW +S V K+ G+ THF+ VQ I R + S
Sbjct: 130 GRACEVVLKNYRKDGTHFWNKLAISPVRDKK-GQLTHFIGVQSDISYRIEAQES 182
>gi|219127104|ref|XP_002183783.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405020|gb|EEC44965.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 103
Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats.
Identities = 43/92 (46%), Positives = 64/92 (69%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
FV+ DP LPD P+VYAS FL LTGY ++++G+NCRFL G +TD + +I+++I+
Sbjct: 1 FVVTDPSLPDNPIVYASQGFLNLTGYSLDQILGRNCRFLQGPETDPKAVERIRKAIEQGN 60
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+V +LNYR D ++FWN I+ +R+A G V
Sbjct: 61 DMSVCLLNYRVDGTTFWNQFFIAALRDAGGNV 92
Score = 96.3 bits (238), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/103 (43%), Positives = 66/103 (64%), Gaps = 1/103 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
F +TDPS+ +PIV+AS+GFL ++G+S +I+GRN R QGP T+ + + IR+AI +
Sbjct: 1 FVVTDPSLPDNPIVYASQGFLNLTGYSLDQILGRNCRFLQGPETDPKAVERIRKAIEQGN 60
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+ V LLNY+ DGT FW F ++ G T+FV VQ +
Sbjct: 61 DMSVCLLNYRVDGTTFWNQFFIA-ALRDAGGNVTNFVGVQCKV 102
>gi|448374219|ref|ZP_21558104.1| bacterio-opsin activator [Halovivax asiaticus JCM 14624]
gi|445660896|gb|ELZ13691.1| bacterio-opsin activator [Halovivax asiaticus JCM 14624]
Length = 674
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 73/130 (56%), Gaps = 3/130 (2%)
Query: 10 QSFNNRYTLWVHE-ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
+ ++R V E A+DE P ITDP +P+V+ + F ++G+S +E IGRN R
Sbjct: 141 EQLDDREERRVKERAMDEAPVGIAITDPDRPDNPLVYVNDSFEALTGYSPSETIGRNCRF 200
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QGP T+ I ++R AI P+ V L NY+ DG FW +++ V EDG+ THFV
Sbjct: 201 LQGPETDLEAIAKLRAAIDAAEPVAVELRNYRADGEVFWNRVEIAPV--TEDGQVTHFVG 258
Query: 129 VQVPIVSRKH 138
Q + +RK
Sbjct: 259 YQTDVTARKE 268
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ DP PD P+VY +D+F LTGY +E +G+NCRFL G +TD + +++ +I +
Sbjct: 163 IAITDPDRPDNPLVYVNDSFEALTGYSPSETIGRNCRFLQGPETDLEAIAKLRAAIDAAE 222
Query: 314 ACTVRILNYRKDKSSFWNLLHISPI 338
V + NYR D FWN + I+P+
Sbjct: 223 PVAVELRNYRADGEVFWNRVEIAPV 247
>gi|300865640|ref|ZP_07110413.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
gi|300336367|emb|CBN55563.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
Length = 631
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 60/92 (65%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ D P++ +Y + AF K+TGY E++G NCR L G DTD + QI+E++ +
Sbjct: 219 IVIADATTPNLANIYCNPAFAKMTGYSHEEIIGHNCRLLQGNDTDPEAINQIREALHNQT 278
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
CTV + NYRKD ++FWN L ISP+R+ GK+
Sbjct: 279 ECTVVLKNYRKDGTTFWNQLAISPVRDRKGKL 310
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 18 LWVHE-ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNR 76
LW++ A+ I D + ++ + F KM+G+S EIIG N R+ QG T+
Sbjct: 205 LWLYSRAMAAASTGIVIADATTPNLANIYCNPAFAKMTGYSHEEIIGHNCRLLQGNDTDP 264
Query: 77 RTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
I +IREA+ + V L NY+KDGT FW +S V ++ G+ THF+ +Q+ +
Sbjct: 265 EAINQIREALHNQTECTVVLKNYRKDGTTFWNQLAISPVRDRK-GKLTHFIGIQMDVTKH 323
Query: 137 K 137
K
Sbjct: 324 K 324
>gi|399057126|ref|ZP_10743793.1| PAS domain S-box [Novosphingobium sp. AP12]
gi|398042358|gb|EJL35389.1| PAS domain S-box [Novosphingobium sp. AP12]
Length = 873
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 68/94 (72%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ DP PD P+V+A+++F +LTGY+R+E++G+NCRFL G +TD + +I ++++
Sbjct: 45 RMPMIITDPRQPDNPVVFANESFCRLTGYERSEILGRNCRFLQGAETDPQTIRRIHDAVE 104
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGK 344
+A + I N+RKD S+FWN L ++P+ +A GK
Sbjct: 105 RVEAIEIDIRNHRKDGSAFWNRLLMAPVYDAYGK 138
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP +P+VFA+ F +++G+ R+EI+GRN R QG T+ +TI I +A+ I
Sbjct: 50 ITDPRQPDNPVVFANESFCRLTGYERSEILGRNCRFLQGAETDPQTIRRIHDAVERVEAI 109
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
E+++ N++KDG+ FW M+ V+ G+ +F A QV +
Sbjct: 110 EIDIRNHRKDGSAFWNRLLMAPVYDAY-GKHAYFFASQVDV 149
>gi|402773313|ref|YP_006592850.1| PAS/PAC sensor protein [Methylocystis sp. SC2]
gi|401775333|emb|CCJ08199.1| Putative PAS/PAC sensor protein [Methylocystis sp. SC2]
Length = 866
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 90/372 (24%), Positives = 155/372 (41%), Gaps = 61/372 (16%)
Query: 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRR 77
L + A+++ P + IT+ I + + F ++G+ E+IGRN RM Q RT
Sbjct: 249 LTLSAAVEQSPIAVMITNKD---GEIEYVNSRFASLTGYPPHELIGRNPRMLQSKRTEGD 305
Query: 78 TIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ E+IR + + +KDG +W ++ +G TH++A+Q I +K
Sbjct: 306 QYRRLWESIRAGVEWRGQIQDRRKDGKLYWA-SEIITPLRNANGEITHYLAIQQDITEQK 364
Query: 138 HMRNSGMS----------------YSEDGGG-----SRLREIVFGSCRREVCSDSLLDLD 176
+ + + +D G S E V G EV + LDL
Sbjct: 365 RDKEALFESEQRFRQIADMAGDWLWEQDPDGRYTYSSGAVEDVLGMTPEEVVGKTYLDL- 423
Query: 177 RVLALDSDDTGLEIEDSCEASDLEKRKAATAIDNILS-VLTHYSQL-------------- 221
++S E + L+ +A A+ V+ HY
Sbjct: 424 ------------FAKESAEDAALKTAPSAIALRRAFHRVVNHYRHKNDGDVFTESTGAPI 471
Query: 222 ---TGRLVC--GKRCSLPGMGFISSSLYI---SLGRIKQSFVLIDPHLPDMPMVYASDAF 273
GRLV G ++ +L + ++ + + D P +P +Y + A
Sbjct: 472 FDEAGRLVKWRGVDHNITSRKTFEDALRVRNRAIESVPIGIAVWDAQAPRVPNIYVNPAL 531
Query: 274 LKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLL 333
++TG+ R E++G + L G +TD L +I+ +I +C V + YRKD SSFW+ L
Sbjct: 532 SRITGFTREELLGHSLHLLRGPETDPAALEEIRNAIVHRASCQVVVKFYRKDGSSFWDEL 591
Query: 334 HISPIRNASGKV 345
ISP+ N +G++
Sbjct: 592 SISPVANEAGRI 603
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+ A++ +P + D P ++ + +++GF+R E++G + + +GP T+ +
Sbjct: 502 NRAIESVPIGIAVWDAQAPRVPNIYVNPALSRITGFTREELLGHSLHLLRGPETDPAALE 561
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
EIR AI +V + Y+KDG+ FW +S V E GR THFV+V I R+ +
Sbjct: 562 EIRNAIVHRASCQVVVKFYRKDGSSFWDELSISPV-ANEAGRITHFVSVHADISDRRRV 619
>gi|448433144|ref|ZP_21585814.1| HTR-like protein [Halorubrum tebenquichense DSM 14210]
gi|445686546|gb|ELZ38863.1| HTR-like protein [Halorubrum tebenquichense DSM 14210]
Length = 1102
Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats.
Identities = 42/90 (46%), Positives = 62/90 (68%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315
+ DP D PMVY +D F+++TGYDR E +G NCRFL G DT+ + Q++++I ++
Sbjct: 273 ITDPQQDDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEASVQQLRDAIDADEPT 332
Query: 316 TVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+V +LNYRKD + FWN + I+PI +A G V
Sbjct: 333 SVELLNYRKDGTEFWNRVSIAPISDADGTV 362
Score = 98.6 bits (244), Expect = 4e-18, Method: Composition-based stats.
Identities = 50/126 (39%), Positives = 71/126 (56%), Gaps = 1/126 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALDE P TITDP +P+V+ + F++M+G+ R E IG N R QGP T ++ ++
Sbjct: 263 ALDEAPVGITITDPQQDDNPMVYVNDRFVEMTGYDREESIGVNCRFLQGPDTEEASVQQL 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R+AI + P V LLNY+KDGT FW ++ + DG TH+V Q I + K
Sbjct: 323 RDAIDADEPTSVELLNYRKDGTEFWNRVSIAPI-SDADGTVTHWVGFQEDITAFKERARG 381
Query: 143 GMSYSE 148
G +E
Sbjct: 382 GARTAE 387
>gi|429330861|ref|ZP_19211639.1| histidine kinase [Pseudomonas putida CSV86]
gi|428764447|gb|EKX86584.1| histidine kinase [Pseudomonas putida CSV86]
Length = 532
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 67/104 (64%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ +P+ D P+++A+ AFL +TGY E+VG+NCRFL G DTD V+
Sbjct: 24 FFAAVETTRMPMIVTNPNAADNPIIFANQAFLDMTGYSPEEIVGRNCRFLQGPDTDPEVV 83
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
I+ +I+ + ILNYRKD SSFWN L ISPI N G+++
Sbjct: 84 GAIRGAIEGRYDFSTEILNYRKDGSSFWNALFISPIFNEKGELV 127
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 65/110 (59%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+T+P+ + +PI+FA++ FL M+G+S EI+GRN R QGP T+ + IR AI
Sbjct: 37 VTNPNAADNPIIFANQAFLDMTGYSPEEIVGRNCRFLQGPDTDPEVVGAIRGAIEGRYDF 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S +F E G +F A Q+ + R+ ++
Sbjct: 97 STEILNYRKDGSSFWNALFISPIF-NEKGELVYFFASQLDVSRRRDAEDA 145
>gi|365887921|ref|ZP_09426733.1| putative sensor histidine kinase with PAS/PAC and Response
regulator receiver domains [Bradyrhizobium sp. STM 3809]
gi|365336463|emb|CCD99264.1| putative sensor histidine kinase with PAS/PAC and Response
regulator receiver domains [Bradyrhizobium sp. STM 3809]
Length = 534
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 67/104 (64%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP D P+++A+ AFL++TGYD +E+VG NCRFL G DTD +
Sbjct: 29 FFAAVETTRMPMIVTDPRQNDNPILFANRAFLEMTGYDLSEIVGANCRFLQGPDTDRDTI 88
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
++ +I Q V ILNYRK+ ++FWN L ISP+ N G+++
Sbjct: 89 DAVRTAIANRQDIAVEILNYRKNGAAFWNALFISPVYNRDGELV 132
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 71/116 (61%), Gaps = 2/116 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP + +PI+FA+R FL+M+G+ +EI+G N R QGP T+R TI +R AI + I
Sbjct: 42 VTDPRQNDNPILFANRAFLEMTGYDLSEIVGANCRFLQGPDTDRDTIDAVRTAIANRQDI 101
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSE 148
V +LNY+K+G FW +S V+ + DG +F Q+ VSR+ S + S+
Sbjct: 102 AVEILNYRKNGAAFWNALFISPVYNR-DGELVYFFGSQLD-VSRRRDAESALVQSQ 155
>gi|428309474|ref|YP_007120451.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428251086|gb|AFZ17045.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 494
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 61/92 (66%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ D PDMP+ Y + AF +LTGY EVVG+NCRFL G DTD L +++E+I+ +
Sbjct: 170 IVIADARKPDMPITYVNPAFERLTGYQAEEVVGRNCRFLQGKDTDQPALNELREAIREGK 229
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
C V + NYRK+ + FWN L +SPI +A G +
Sbjct: 230 GCKVILSNYRKNGTLFWNELSVSPIYDAEGNL 261
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
++A+ D I D PI + + F +++G+ E++GRN R QG T++ +
Sbjct: 160 NQAIAASSDGIVIADARKPDMPITYVNPAFERLTGYQAEEVVGRNCRFLQGKDTDQPALN 219
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140
E+REAIRE + +V L NY+K+GT FW +S ++ E G THFV +Q I RK +
Sbjct: 220 ELREAIREGKGCKVILSNYRKNGTLFWNELSVSPIYDAE-GNLTHFVGIQSDITERK-VA 277
Query: 141 NSGMSYSED 149
+ Y ++
Sbjct: 278 QEALHYQQE 286
>gi|291295643|ref|YP_003507041.1| PAS/PAC sensor signal transduction histidine kinase [Meiothermus
ruber DSM 1279]
gi|290470602|gb|ADD28021.1| PAS/PAC sensor signal transduction histidine kinase [Meiothermus
ruber DSM 1279]
Length = 578
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ + ITD + +PIV+ + GF++++G+ E++GRN R QGP TN T+ +
Sbjct: 9 AVETILAGVVITDAQLPDYPIVYCNPGFVQLTGYPSEEVLGRNCRFLQGPATNPETVARL 68
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
R AI E RP V LLNY+KDG PFW +++ V E GR THFV +Q
Sbjct: 69 RRAIHEGRPAHVLLLNYRKDGQPFWNDLRIAPVRDVE-GRLTHFVGIQ 115
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 63/101 (62%)
Query: 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQ 304
I++ I V+ D LPD P+VY + F++LTGY EV+G+NCRFL G T+ + +
Sbjct: 8 IAVETILAGVVITDAQLPDYPIVYCNPGFVQLTGYPSEEVLGRNCRFLQGPATNPETVAR 67
Query: 305 IKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
++ +I + V +LNYRKD FWN L I+P+R+ G++
Sbjct: 68 LRRAIHEGRPAHVLLLNYRKDGQPFWNDLRIAPVRDVEGRL 108
>gi|297624984|ref|YP_003706418.1| PAS/PAC sensor signal transduction histidine kinase [Truepera
radiovictrix DSM 17093]
gi|297166164|gb|ADI15875.1| PAS/PAC sensor signal transduction histidine kinase [Truepera
radiovictrix DSM 17093]
Length = 465
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 59/91 (64%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
++ DP LPD P++Y + F +LTGY R+EV+G+NCRFL G DTD L ++ +I Q
Sbjct: 22 LITDPRLPDNPIIYVNRGFERLTGYARDEVLGRNCRFLQGRDTDQAALPALRAAIARGQG 81
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
V + NYRKD + FWN LHI+PI A V
Sbjct: 82 IRVELRNYRKDGAMFWNELHITPIWRAGSLV 112
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 65/111 (58%), Gaps = 2/111 (1%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ EA+ + ITDP + +PI++ +RGF +++G++R E++GRN R QG T++ +
Sbjct: 10 LREAVQAANNVVLITDPRLPDNPIIYVNRGFERLTGYARDEVLGRNCRFLQGRDTDQAAL 69
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
+R AI + I V L NY+KDG FW ++ ++ G +F+ VQ
Sbjct: 70 PALRAAIARGQGIRVELRNYRKDGAMFWNELHITPIW--RAGSLVYFLGVQ 118
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 71/128 (55%), Gaps = 3/128 (2%)
Query: 22 EALDELPDSFTITDPSIS--GHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+AL+ ++ +T+ ++ G I++ +R F M+G++ E++G+ RMFQGPRT+R +
Sbjct: 136 QALEHANEAVIVTEAALERPGPRILYVNRAFSAMTGYAPEEVLGKTPRMFQGPRTSRAVL 195
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+R + + +NY+KDG+PF + + ++ + G TH+V+ Q + R+ +
Sbjct: 196 NRMRRRLGRGGVFQGETINYRKDGSPFILAWHVAPIR-DALGSITHWVSTQRDVTERRLL 254
Query: 140 RNSGMSYS 147
+ S
Sbjct: 255 ERQALDIS 262
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILN 321
P ++Y + AF +TGY EV+G+ R G T VL +++ + +N
Sbjct: 155 PGPRILYVNRAFSAMTGYAPEEVLGKTPRMFQGPRTSRAVLNRMRRRLGRGGVFQGETIN 214
Query: 322 YRKDKSSFWNLLHISPIRNASGKV 345
YRKD S F H++PIR+A G +
Sbjct: 215 YRKDGSPFILAWHVAPIRDALGSI 238
>gi|448397476|ref|ZP_21569509.1| bacterio-opsin activator [Haloterrigena limicola JCM 13563]
gi|445672575|gb|ELZ25146.1| bacterio-opsin activator [Haloterrigena limicola JCM 13563]
Length = 633
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 63/88 (71%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTV 317
DP L D P+VY +DA+ ++TGY+ +EVVG+NCRFL G ++D + ++ +I ++ TV
Sbjct: 148 DPDLDDNPLVYVNDAYEEITGYEYDEVVGRNCRFLQGEESDENAIAEMAAAIDEDRPVTV 207
Query: 318 RILNYRKDKSSFWNLLHISPIRNASGKV 345
I NYRKD + FWN + I+P+R+ +G+V
Sbjct: 208 EIKNYRKDGTEFWNEVTIAPVRDEAGRV 235
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL+E P TI+DP + +P+V+ + + +++G+ E++GRN R QG ++ I E+
Sbjct: 136 ALEEAPVGVTISDPDLDDNPLVYVNDAYEEITGYEYDEVVGRNCRFLQGEESDENAIAEM 195
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
AI E+RP+ V + NY+KDGT FW ++ V E GR TH+V Q I +RK
Sbjct: 196 AAAIDEDRPVTVEIKNYRKDGTEFWNEVTIAPVR-DEAGRVTHYVGFQNDITARKE 250
>gi|415921429|ref|ZP_11554531.1| Sensor protein [Herbaspirillum frisingense GSF30]
gi|407760818|gb|EKF70018.1| Sensor protein [Herbaspirillum frisingense GSF30]
Length = 537
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 69/103 (66%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ PD P+++ ++AF+ +TGY R +V+G+NCRFL G +TD V+
Sbjct: 30 FFAAVEMTRMPMIVSDPNQPDNPIIFVNNAFINMTGYSRADVIGKNCRFLQGPETDRAVV 89
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
Q++E++ + +LNYRK+ S+FWN L ISP+ + G++
Sbjct: 90 AQVREAVLERREIATELLNYRKNGSTFWNALFISPVYDQHGEL 132
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
++DP+ +PI+F + F+ M+G+SRA++IG+N R QGP T+R + ++REA+ E R I
Sbjct: 43 VSDPNQPDNPIIFVNNAFINMTGYSRADVIGKNCRFLQGPETDRAVVAQVREAVLERREI 102
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
LLNY+K+G+ FW +S V+ + G +F + Q+ I R+
Sbjct: 103 ATELLNYRKNGSTFWNALFISPVY-DQHGELKYFFSSQLDISRRR 146
>gi|456352370|dbj|BAM86815.1| putative sensor histidine kinase with PAS/PAC and response
regulator receiver domains [Agromonas oligotrophica S58]
Length = 534
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 66/104 (63%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP D P+++A+ AF+++TGYD E+VG NCRFL G DTD +
Sbjct: 29 FFAAVETTRMPMIVTDPRQNDNPILFANRAFIEMTGYDLAEIVGTNCRFLQGPDTDRETV 88
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
I+ +I Q V ILNYRK+ ++FWN L ISP+ N G+++
Sbjct: 89 AAIRSAIANRQDVAVEILNYRKNGAAFWNALFISPVYNRDGELV 132
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP + +PI+FA+R F++M+G+ AEI+G N R QGP T+R T+ IR AI + +
Sbjct: 42 VTDPRQNDNPILFANRAFIEMTGYDLAEIVGTNCRFLQGPDTDRETVAAIRSAIANRQDV 101
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
V +LNY+K+G FW +S V+ + DG +F A Q+ + R+
Sbjct: 102 AVEILNYRKNGAAFWNALFISPVYNR-DGELVYFFASQLDVSRRR 145
>gi|422607389|ref|ZP_16679389.1| histidine kinase, partial [Pseudomonas syringae pv. mori str.
301020]
gi|330891031|gb|EGH23692.1| histidine kinase [Pseudomonas syringae pv. mori str. 301020]
Length = 254
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 67/104 (64%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ D P+++++ AFL++TGY E++G NCRFL G +TD V+
Sbjct: 24 FFAAVETTRMPMIVTDPNRADNPIIFSNRAFLEMTGYSSEEIIGTNCRFLQGPETDRAVV 83
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
I+E+I + ILNYRKD S+FWN L ISP+ N +G ++
Sbjct: 84 QSIREAIDERVDISTEILNYRKDGSTFWNALFISPVYNDAGDLI 127
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ + +PI+F++R FL+M+G+S EIIG N R QGP T+R + IREAI E I
Sbjct: 37 VTDPNRADNPIIFSNRAFLEMTGYSSEEIIGTNCRFLQGPETDRAVVQSIREAIDERVDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+ ++
Sbjct: 97 STEILNYRKDGSTFWNALFISPVY-NDAGDLIYFFASQLDISRRRDAEDA 145
>gi|254562456|ref|YP_003069551.1| histidine kinase [Methylobacterium extorquens DM4]
gi|254269734|emb|CAX25706.1| Putative histidine kinase; putative HK, ATPase and sensory PAS
domain [Methylobacterium extorquens DM4]
Length = 354
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 64/96 (66%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ + ++ DP D P++YA+DAFL+LTGY R EV G+NCRFL G TD + +I+ +I
Sbjct: 33 RMAMIITDPRRLDNPIIYANDAFLRLTGYTRLEVTGRNCRFLQGPGTDFDAVARIRAAID 92
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
E+ +LNYRKD S+F N L+ISP+ + G +L
Sbjct: 93 AERDVHEELLNYRKDGSTFHNALYISPVHDEDGTLL 128
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ ITDP +PI++A+ FL+++G++R E+ GRN R QGP T+ + IR AI E
Sbjct: 35 AMIITDPRRLDNPIIYANDAFLRLTGYTRLEVTGRNCRFLQGPGTDFDAVARIRAAIDAE 94
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
R + LLNY+KDG+ F +S V EDG + A Q + R +
Sbjct: 95 RDVHEELLNYRKDGSTFHNALYISPVH-DEDGTLLFYFASQFDVSERHAL 143
>gi|298708460|emb|CBJ30584.1| aureochrome 5 [Ectocarpus siliculosus]
Length = 310
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 66/100 (66%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + +FVL +P+LPD P+++AS FL LTGYD N+V+G+NCRFL G TD L I
Sbjct: 93 ALADSQANFVLTNPNLPDCPIIFASQGFLDLTGYDGNDVIGKNCRFLQGRGTDPVTLSII 152
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ ++ +V ILNY+KDK+ FWN L I + ++ G+
Sbjct: 153 RNNVAAGLDTSVCILNYKKDKTPFWNQLSIGVLLDSHGQA 192
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+AL + +F +T+P++ PI+FAS+GFL ++G+ ++IG+N R QG T+ T+
Sbjct: 92 KALADSQANFVLTNPNLPDCPIIFASQGFLDLTGYDGNDVIGKNCRFLQGRGTDPVTLSI 151
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAV 129
IR + V +LNYKKD TPFW + ++ G+A + V V
Sbjct: 152 IRNNVAAGLDTSVCILNYKKDKTPFWNQLSIGVLLDSH-GQAANHVGV 198
>gi|46202968|ref|ZP_00052303.2| COG3920: Signal transduction histidine kinase [Magnetospirillum
magnetotacticum MS-1]
Length = 358
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 80/127 (62%), Gaps = 6/127 (4%)
Query: 220 QLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGY 279
QLT R+ G R G G + ++ + + ++ DP+ D P+VYA+DAFL+LTGY
Sbjct: 8 QLTERVWAGARS---GKG---NPFAAAVRATRMAMIITDPNRLDNPIVYANDAFLRLTGY 61
Query: 280 DRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIR 339
R EV G+NCRFL G DTD + +I+ +I +E+ V +LNYRKD S+F N ++ISP+
Sbjct: 62 TRLEVTGRNCRFLQGPDTDLDAVARIRAAIASERDVQVELLNYRKDGSTFHNAVYISPVH 121
Query: 340 NASGKVL 346
+ G +L
Sbjct: 122 DEDGTLL 128
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ ITDP+ +PIV+A+ FL+++G++R E+ GRN R QGP T+ + IR AI E
Sbjct: 35 AMIITDPNRLDNPIVYANDAFLRLTGYTRLEVTGRNCRFLQGPDTDLDAVARIRAAIASE 94
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
R ++V LLNY+KDG+ F +S V EDG F A Q+ + R +
Sbjct: 95 RDVQVELLNYRKDGSTFHNAVYISPVH-DEDGTLLFFFASQLDVSERHAL 143
>gi|289626532|ref|ZP_06459486.1| histidine kinase, partial [Pseudomonas syringae pv. aesculi str.
NCPPB 3681]
gi|289649213|ref|ZP_06480556.1| histidine kinase [Pseudomonas syringae pv. aesculi str. 2250]
Length = 452
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 67/104 (64%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ D P+++++ AFL++TGY E++G NCRFL G +TD V+
Sbjct: 24 FFAAVETTRMPMIVTDPNRADNPIIFSNRAFLEMTGYSSEEIIGTNCRFLQGPETDRAVV 83
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
I+E+I + ILNYRKD S+FWN L ISP+ N +G ++
Sbjct: 84 QSIREAIDERVDISTEILNYRKDGSTFWNALFISPVYNDAGDLI 127
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ + +PI+F++R FL+M+G+S EIIG N R QGP T+R + IREAI E I
Sbjct: 37 VTDPNRADNPIIFSNRAFLEMTGYSSEEIIGTNCRFLQGPETDRAVVQSIREAIDERVDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+ ++
Sbjct: 97 STEILNYRKDGSTFWNALFISPVY-NDAGDLIYFFASQLDISRRRDAEDA 145
>gi|416016882|ref|ZP_11564119.1| histidine kinase [Pseudomonas syringae pv. glycinea str. B076]
gi|416027004|ref|ZP_11570335.1| histidine kinase [Pseudomonas syringae pv. glycinea str. race 4]
gi|416028131|ref|ZP_11571231.1| histidine kinase [Pseudomonas syringae pv. glycinea str. race 4]
gi|422407611|ref|ZP_16484577.1| histidine kinase [Pseudomonas syringae pv. glycinea str. race 4]
gi|221272073|sp|Q48IV1.2|LOVHK_PSE14 RecName: Full=Blue-light-activated protein; Includes: RecName:
Full=Blue-light-activated histidine kinase; Includes:
RecName: Full=Response regulator
gi|320324090|gb|EFW80172.1| histidine kinase [Pseudomonas syringae pv. glycinea str. B076]
gi|320327829|gb|EFW83836.1| histidine kinase [Pseudomonas syringae pv. glycinea str. race 4]
gi|320328665|gb|EFW84665.1| histidine kinase [Pseudomonas syringae pv. glycinea str. race 4]
gi|330885482|gb|EGH19631.1| histidine kinase [Pseudomonas syringae pv. glycinea str. race 4]
Length = 534
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 67/104 (64%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ D P+++++ AFL++TGY E++G NCRFL G +TD V+
Sbjct: 24 FFAAVETTRMPMIVTDPNRADNPIIFSNRAFLEMTGYSSEEIIGTNCRFLQGPETDRAVV 83
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
I+E+I + ILNYRKD S+FWN L ISP+ N +G ++
Sbjct: 84 QSIREAIDERVDISTEILNYRKDGSTFWNALFISPVYNDAGDLI 127
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ + +PI+F++R FL+M+G+S EIIG N R QGP T+R + IREAI E I
Sbjct: 37 VTDPNRADNPIIFSNRAFLEMTGYSSEEIIGTNCRFLQGPETDRAVVQSIREAIDERVDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+ ++
Sbjct: 97 STEILNYRKDGSTFWNALFISPVY-NDAGDLIYFFASQLDISRRRDAEDA 145
>gi|158853253|dbj|BAF91488.1| aureochrome1 [Vaucheria frigida]
Length = 348
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 71/105 (67%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
SL +L +Q+FV+ D LPD P+VYAS FL LTGY ++++G+NCRFL G +TD
Sbjct: 207 SLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRA 266
Query: 302 LYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+ +I +V +LNYR+D ++FWNL ++ +R++ G ++
Sbjct: 267 VDKIRNAITKGVDTSVCLLNYRQDGTTFWNLFFVAGLRDSKGNIV 311
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 5/114 (4%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+AL +F ITD S+ +PIV+ASRGFL ++G+S +I+GRN R QGP T+ R + +
Sbjct: 210 KALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDK 269
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED--GRATHFVAVQVPI 133
IR AI + V LLNY++DGT FW LF V G D G ++V VQ +
Sbjct: 270 IRNAITKGVDTSVCLLNYRQDGTTFWNLF---FVAGLRDSKGNIVNYVGVQSKV 320
>gi|257484183|ref|ZP_05638224.1| histidine kinase [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|422678915|ref|ZP_16737189.1| histidine kinase [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|331008262|gb|EGH88319.1| histidine kinase [Pseudomonas syringae pv. tabaci str. ATCC 11528]
Length = 534
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 67/104 (64%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ D P+++++ AFL++TGY E++G NCRFL G +TD V+
Sbjct: 24 FFAAVETTRMPMIVTDPNRADNPIIFSNRAFLEMTGYSSEEIIGTNCRFLQGPETDRAVV 83
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
I+E+I + ILNYRKD S+FWN L ISP+ N +G ++
Sbjct: 84 QSIREAIDERVDISTEILNYRKDGSTFWNALFISPVYNDAGDLI 127
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ + +PI+F++R FL+M+G+S EIIG N R QGP T+R + IREAI E I
Sbjct: 37 VTDPNRADNPIIFSNRAFLEMTGYSSEEIIGTNCRFLQGPETDRAVVQSIREAIDERVDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+ ++
Sbjct: 97 STEILNYRKDGSTFWNALFISPVY-NDAGDLIYFFASQLDISRRRDAEDA 145
>gi|422580175|ref|ZP_16655643.1| histidine kinase, partial [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|330870611|gb|EGH05320.1| histidine kinase [Pseudomonas syringae pv. aesculi str. 0893_23]
Length = 446
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 67/104 (64%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ D P+++++ AFL++TGY E++G NCRFL G +TD V+
Sbjct: 24 FFAAVETTRMPMIVTDPNRADNPIIFSNRAFLEMTGYSSEEIIGTNCRFLQGPETDRAVV 83
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
I+E+I + ILNYRKD S+FWN L ISP+ N +G ++
Sbjct: 84 QSIREAIDERVDISTEILNYRKDGSTFWNALFISPVYNDAGDLI 127
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ + +PI+F++R FL+M+G+S EIIG N R QGP T+R + IREAI E I
Sbjct: 37 VTDPNRADNPIIFSNRAFLEMTGYSSEEIIGTNCRFLQGPETDRAVVQSIREAIDERVDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+ ++
Sbjct: 97 STEILNYRKDGSTFWNALFISPVY-NDAGDLIYFFASQLDISRRRDAEDA 145
>gi|218531536|ref|YP_002422352.1| signal transduction histidine kinase [Methylobacterium extorquens
CM4]
gi|218523839|gb|ACK84424.1| signal transduction histidine kinase [Methylobacterium extorquens
CM4]
Length = 354
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 64/96 (66%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ + ++ DP D P++YA+DAFL+LTGY R EV G+NCRFL G TD + +I+ +I
Sbjct: 33 RMAMIITDPRRLDNPIIYANDAFLRLTGYTRLEVTGRNCRFLQGPGTDFDAVARIRAAID 92
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
E+ +LNYRKD S+F N L+ISP+ + G +L
Sbjct: 93 AERDVHEELLNYRKDGSTFHNALYISPVHDEDGTLL 128
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ ITDP +PI++A+ FL+++G++R E+ GRN R QGP T+ + IR AI E
Sbjct: 35 AMIITDPRRLDNPIIYANDAFLRLTGYTRLEVTGRNCRFLQGPGTDFDAVARIRAAIDAE 94
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
R + LLNY+KDG+ F +S V EDG + A Q + R +
Sbjct: 95 RDVHEELLNYRKDGSTFHNALYISPVH-DEDGTLLFYFASQFDVSDRHAL 143
>gi|153010973|ref|YP_001372187.1| signal transduction histidine kinase [Ochrobactrum anthropi ATCC
49188]
gi|221272051|sp|A6X554.1|LOVHK_OCHA4 RecName: Full=Blue-light-activated histidine kinase
gi|151562861|gb|ABS16358.1| signal transduction histidine kinase [Ochrobactrum anthropi ATCC
49188]
Length = 491
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 64/92 (69%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ +P LPD P+++A++AF LTGY+ +E++G+NCRFL G TD + I +++ EQ
Sbjct: 34 MLITNPRLPDNPIIFANEAFQNLTGYEADEIIGKNCRFLQGPGTDPKHVEIIHSALEAEQ 93
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ + ILNY+K FWN LHISP++ +G++
Sbjct: 94 SVEIDILNYKKSGEPFWNRLHISPVKTENGEL 125
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ P IT+P + +PI+FA+ F ++G+ EIIG+N R QGP T+ + + I
Sbjct: 26 AVELTPMPMLITNPRLPDNPIIFANEAFQNLTGYEADEIIGKNCRFLQGPGTDPKHVEII 85
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
A+ E+ +E+++LNYKK G PFW +S V E+G HFV+ Q+ +
Sbjct: 86 HSALEAEQSVEIDILNYKKSGEPFWNRLHISPV-KTENGELHHFVSSQLDV 135
>gi|404317909|ref|ZP_10965842.1| signal transduction histidine kinase [Ochrobactrum anthropi
CTS-325]
Length = 480
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 64/92 (69%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ +P LPD P+++A++AF LTGY+ +E++G+NCRFL G TD + I +++ EQ
Sbjct: 23 MLITNPRLPDNPIIFANEAFQNLTGYEADEIIGKNCRFLQGPGTDPKHVEIIHSALEAEQ 82
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ + ILNY+K FWN LHISP++ +G++
Sbjct: 83 SVEIDILNYKKSGEPFWNRLHISPVKTENGEL 114
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ P IT+P + +PI+FA+ F ++G+ EIIG+N R QGP T+ + + I
Sbjct: 15 AVELTPMPMLITNPRLPDNPIIFANEAFQNLTGYEADEIIGKNCRFLQGPGTDPKHVEII 74
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
A+ E+ +E+++LNYKK G PFW +S V E+G HFV+ Q+ +
Sbjct: 75 HSALEAEQSVEIDILNYKKSGEPFWNRLHISPV-KTENGELHHFVSSQLDVT 125
>gi|298158507|gb|EFH99574.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 534
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 67/104 (64%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ D P+++++ AFL++TGY E++G NCRFL G +TD V+
Sbjct: 24 FFAAVETTRMPMIVTDPNRADNPIIFSNRAFLEMTGYSSEEIIGTNCRFLQGPETDRAVV 83
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
I+E+I + ILNYRKD S+FWN L ISP+ N +G ++
Sbjct: 84 QSIREAIDERVDISTEILNYRKDGSTFWNALFISPVYNDAGDLI 127
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ + +PI+F++R FL+M+G+S EIIG N R QGP T+R + IREAI E I
Sbjct: 37 VTDPNRADNPIIFSNRAFLEMTGYSSEEIIGTNCRFLQGPETDRAVVQSIREAIDERVDI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+ ++
Sbjct: 97 STEILNYRKDGSTFWNALFISPVY-NDAGDLIYFFASQLDISRRRDAEDA 145
>gi|163852695|ref|YP_001640738.1| PAS sensor protein [Methylobacterium extorquens PA1]
gi|163664300|gb|ABY31667.1| PAS sensor protein [Methylobacterium extorquens PA1]
Length = 354
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 64/96 (66%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ + ++ DP D P++YA+DAFL+LTGY R EV G+NCRFL G TD + +I+ +I
Sbjct: 33 RMAMIITDPRRLDNPIIYANDAFLRLTGYTRLEVTGRNCRFLQGPGTDFDAVARIRAAID 92
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
E+ +LNYRKD S+F N L+ISP+ + G +L
Sbjct: 93 AERDVHEELLNYRKDGSTFHNALYISPVHDEDGTLL 128
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ ITDP +PI++A+ FL+++G++R E+ GRN R QGP T+ + IR AI E
Sbjct: 35 AMIITDPRRLDNPIIYANDAFLRLTGYTRLEVTGRNCRFLQGPGTDFDAVARIRAAIDAE 94
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
R + LLNY+KDG+ F +S V EDG + A Q + R +
Sbjct: 95 RDVHEELLNYRKDGSTFHNALYISPVH-DEDGTLLFYFASQFDVSDRHAL 143
>gi|240140029|ref|YP_002964506.1| histidine kinase; HK, ATPase and sensory PAS domain
[Methylobacterium extorquens AM1]
gi|418061648|ref|ZP_12699494.1| signal transduction histidine kinase [Methylobacterium extorquens
DSM 13060]
gi|240010003|gb|ACS41229.1| Putative histidine kinase; putative HK, ATPase and sensory PAS
domain [Methylobacterium extorquens AM1]
gi|373564801|gb|EHP90884.1| signal transduction histidine kinase [Methylobacterium extorquens
DSM 13060]
Length = 354
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 64/96 (66%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ + ++ DP D P++YA+DAFL+LTGY R EV G+NCRFL G TD + +I+ +I
Sbjct: 33 RMAMIITDPRRLDNPIIYANDAFLRLTGYTRLEVTGRNCRFLQGPGTDFDAVARIRAAID 92
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
E+ +LNYRKD S+F N L+ISP+ + G +L
Sbjct: 93 AERDVHEELLNYRKDGSTFHNALYISPVHDEDGTLL 128
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ ITDP +PI++A+ FL+++G++R E+ GRN R QGP T+ + IR AI E
Sbjct: 35 AMIITDPRRLDNPIIYANDAFLRLTGYTRLEVTGRNCRFLQGPGTDFDAVARIRAAIDAE 94
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
R + LLNY+KDG+ F +S V EDG + A Q + R +
Sbjct: 95 RDVHEELLNYRKDGSTFHNALYISPVH-DEDGTLLFYFASQFDVSERHAL 143
>gi|220926021|ref|YP_002501323.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
ORS 2060]
gi|219950628|gb|ACL61020.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
ORS 2060]
Length = 559
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 68/104 (65%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + +L DP D P+V+A++AFL LTGY+ +EV+G+NCRFL G TD +
Sbjct: 34 FFAAVEMTRMPMILADPRQDDTPIVFANNAFLDLTGYEESEVLGRNCRFLQGSGTDPEHV 93
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+++E++ + + ILNYR+D + FWN + + P+ + +G+V+
Sbjct: 94 AKLREAVHERKPIAIEILNYRRDGTPFWNAVFMGPVHDPAGEVI 137
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+ DP PIVFA+ FL ++G+ +E++GRN R QG T+ + ++REA+ E +PI
Sbjct: 47 LADPRQDDTPIVFANNAFLDLTGYEESEVLGRNCRFLQGSGTDPEHVAKLREAVHERKPI 106
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ +LNY++DGTPFW M V G +F A Q+ + R+
Sbjct: 107 AIEILNYRRDGTPFWNAVFMGPVHDPA-GEVIYFFASQLDVTQRR 150
>gi|71733399|ref|YP_274680.1| histidine kinase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|71553952|gb|AAZ33163.1| sensory box histidine kinase/response regulator [Pseudomonas
syringae pv. phaseolicola 1448A]
Length = 507
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 64/96 (66%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ DP+ D P+++++ AFL++TGY E++G NCRFL G +TD V+ I+E+I
Sbjct: 5 RMPMIVTDPNRADNPIIFSNRAFLEMTGYSSEEIIGTNCRFLQGPETDRAVVQSIREAID 64
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ ILNYRKD S+FWN L ISP+ N +G ++
Sbjct: 65 ERVDISTEILNYRKDGSTFWNALFISPVYNDAGDLI 100
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ + +PI+F++R FL+M+G+S EIIG N R QGP T+R + IREAI E I
Sbjct: 10 VTDPNRADNPIIFSNRAFLEMTGYSSEEIIGTNCRFLQGPETDRAVVQSIREAIDERVDI 69
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+LNY+KDG+ FW +S V+ + G +F A Q+ I R+ ++
Sbjct: 70 STEILNYRKDGSTFWNALFISPVY-NDAGDLIYFFASQLDISRRRDAEDA 118
>gi|284163953|ref|YP_003402232.1| PAS/PAC sensor protein [Haloterrigena turkmenica DSM 5511]
gi|284013608|gb|ADB59559.1| putative PAS/PAC sensor protein [Haloterrigena turkmenica DSM 5511]
Length = 644
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P TI+DP + +P+V+ + + +++G+ E++GRN R QG + I E+
Sbjct: 142 AINEAPVGITISDPDLEDNPLVYVNDAYQEITGYGYDEVVGRNCRFLQGEDSQEVAIAEM 201
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
AI EERP+ V L NY+KDGT FW ++ V EDG TH+V Q + +RK
Sbjct: 202 AAAIDEERPVTVELKNYRKDGTEFWNEVTIAPVR-DEDGTVTHYVGFQNDVTARKE 256
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 60/92 (65%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ DP L D P+VY +DA+ ++TGY +EVVG+NCRFL G D+ + ++ +I E+
Sbjct: 150 ITISDPDLEDNPLVYVNDAYQEITGYGYDEVVGRNCRFLQGEDSQEVAIAEMAAAIDEER 209
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV + NYRKD + FWN + I+P+R+ G V
Sbjct: 210 PVTVELKNYRKDGTEFWNEVTIAPVRDEDGTV 241
>gi|359785259|ref|ZP_09288412.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Halomonas sp. GFAJ-1]
gi|359297374|gb|EHK61609.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Halomonas sp. GFAJ-1]
Length = 874
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 62/91 (68%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
++ D LPD P+VYA+ AF +TGY + +V+G NCRFL G D+D V+ Q++ I+ +
Sbjct: 328 LIADASLPDTPVVYANKAFTAITGYSQEDVIGHNCRFLQGPDSDPEVVAQLRRGIKERRE 387
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
V I NYR+D + FWN L+I+P+R+ G+V
Sbjct: 388 VHVTICNYRQDGTPFWNDLYIAPVRDQEGQV 418
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
I D S+ P+V+A++ F ++G+S+ ++IG N R QGP ++ + ++R I+E R +
Sbjct: 329 IADASLPDTPVVYANKAFTAITGYSQEDVIGHNCRFLQGPDSDPEVVAQLRRGIKERREV 388
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
V + NY++DGTPFW ++ V +E G+ THFV +Q I +K
Sbjct: 389 HVTICNYRQDGTPFWNDLYIAPVRDQE-GQVTHFVGIQHDISQQK 432
>gi|224000393|ref|XP_002289869.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975077|gb|EED93406.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 103
Score = 99.0 bits (245), Expect = 3e-18, Method: Composition-based stats.
Identities = 42/92 (45%), Positives = 63/92 (68%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
FV+ DP LPD P+VYA+ FL LTGY ++V+G+NCRFL G +TD + +I+ +I+
Sbjct: 1 FVVTDPSLPDNPIVYATQGFLNLTGYTLDQVLGRNCRFLQGPETDPKAVEKIRNAIEEGS 60
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+V +LNYR D ++FWN I+ +R+A G +
Sbjct: 61 DMSVCLLNYRVDGTTFWNQFFIAALRDAGGNI 92
Score = 93.6 bits (231), Expect = 1e-16, Method: Composition-based stats.
Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 1/103 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
F +TDPS+ +PIV+A++GFL ++G++ +++GRN R QGP T+ + + +IR AI E
Sbjct: 1 FVVTDPSLPDNPIVYATQGFLNLTGYTLDQVLGRNCRFLQGPETDPKAVEKIRNAIEEGS 60
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+ V LLNY+ DGT FW F ++ G T++V VQ +
Sbjct: 61 DMSVCLLNYRVDGTTFWNQFFIA-ALRDAGGNITNYVGVQCKV 102
>gi|55380223|ref|YP_138072.1| light- and oxygen-sensing histidine kinase [Haloarcula marismortui
ATCC 43049]
gi|55232948|gb|AAV48366.1| putative 22-domain light- and oxygen-sensing histidine kinase
[Haloarcula marismortui ATCC 43049]
Length = 2306
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE ITDP+ + +P+V+ + GF +M+G++ + +GRN R QG T+ + +
Sbjct: 659 AMDEATVGIQITDPTQADNPLVYVNDGFERMTGYTAEDALGRNPRFLQGADTDPEQVARL 718
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140
REAI + P+ V L NY+KDGTP+W ++ V G E+G T++V +Q + R+ +
Sbjct: 719 REAIDADEPVSVELKNYRKDGTPYWARLSITPVTG-ENGTVTNYVGIQQDVTERRERK 775
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 55/92 (59%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ DP P+VY +D F+ TGY R E +G+NCRFL D D + L +++++I +E+
Sbjct: 1471 ITISDPDREGNPLVYVNDGFVDQTGYSREEALGRNCRFLQRDDRDQSALDELRKAIASEE 1530
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
V + NYRKD FWN L ++PI + G +
Sbjct: 1531 PSIVELRNYRKDGEQFWNRLSVTPIYDDVGTL 1562
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 56/90 (62%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315
+ DP D P+VY +D F ++TGY + +G+N RFL G DTD + +++E+I ++
Sbjct: 669 ITDPTQADNPLVYVNDGFERMTGYTAEDALGRNPRFLQGADTDPEQVARLREAIDADEPV 728
Query: 316 TVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+V + NYRKD + +W L I+P+ +G V
Sbjct: 729 SVELKNYRKDGTPYWARLSITPVTGENGTV 758
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE TI+DP G+P+V+ + GF+ +G+SR E +GRN R Q ++ + E+
Sbjct: 1463 AMDEANVGITISDPDREGNPLVYVNDGFVDQTGYSREEALGRNCRFLQRDDRDQSALDEL 1522
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R+AI E P V L NY+KDG FW ++ ++ + G +++ +Q + K
Sbjct: 1523 RKAIASEEPSIVELRNYRKDGEQFWNRLSVTPIY-DDVGTLANYIGIQQDVSDEK 1576
>gi|447916567|ref|YP_007397135.1| histidine kinase [Pseudomonas poae RE*1-1-14]
gi|445200430|gb|AGE25639.1| histidine kinase [Pseudomonas poae RE*1-1-14]
Length = 524
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 67/94 (71%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
+ ++ DP D P+++A+ AF+ LTG++++E++G+NCRFL G +TD L Q +++I+
Sbjct: 35 AMIVTDPAQHDNPIIFANQAFVDLTGFEQDEIIGRNCRFLQGPETDKCALAQAQQAIERH 94
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
V +LNYRKD S+FWN + I+P+ N +G+++
Sbjct: 95 HEVCVEVLNYRKDGSTFWNEIFIAPLFNEAGQLV 128
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 82/137 (59%), Gaps = 3/137 (2%)
Query: 13 NNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72
+NR L++ A+ + +TDP+ +PI+FA++ F+ ++GF + EIIGRN R QGP
Sbjct: 19 SNRKDLFL-AAMKASHSAMIVTDPAQHDNPIIFANQAFVDLTGFEQDEIIGRNCRFLQGP 77
Query: 73 RTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132
T++ + + ++AI + V +LNY+KDG+ FW ++ +F E G+ +F A Q+
Sbjct: 78 ETDKCALAQAQQAIERHHEVCVEVLNYRKDGSTFWNEIFIAPLF-NEAGQLVYFFASQLD 136
Query: 133 IVSRKHMRNSGMSYSED 149
VSR+H + ++D
Sbjct: 137 -VSRRHDAEQRLRSAQD 152
>gi|427400762|ref|ZP_18892000.1| PAS domain S-box protein [Massilia timonae CCUG 45783]
gi|425720275|gb|EKU83198.1| PAS domain S-box protein [Massilia timonae CCUG 45783]
Length = 569
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 70/110 (63%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP +PIVFA+ F+ ++G+ +I+GRN R QGP T+R T+ E+ A+ E+R +
Sbjct: 82 ITDPRQEDNPIVFANGAFVDLTGYPIEQILGRNCRFLQGPDTDRATVAELHRAVEEQRAV 141
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
V+++NYK DGTPFW +F +E G+ +F A Q+ I R++ + S
Sbjct: 142 AVDIVNYKADGTPFWNALFFGPIFDQE-GKLLYFFASQMDITERRNNQES 190
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 64/104 (61%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP D P+V+A+ AF+ LTGY +++G+NCRFL G DTD +
Sbjct: 69 FFAAVEMTRMPMLITDPRQEDNPIVFANGAFVDLTGYPIEQILGRNCRFLQGPDTDRATV 128
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
++ +++ ++A V I+NY+ D + FWN L PI + GK+L
Sbjct: 129 AELHRAVEEQRAVAVDIVNYKADGTPFWNALFFGPIFDQEGKLL 172
>gi|323448496|gb|EGB04394.1| hypothetical protein AURANDRAFT_9009 [Aureococcus anophagefferens]
Length = 104
Score = 98.6 bits (244), Expect = 4e-18, Method: Composition-based stats.
Identities = 45/104 (43%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SF ITDP++ +PIVFAS GFL ++G+ +++GRN R QGPRT+ R + +IREAI+
Sbjct: 2 SFVITDPTLPDNPIVFASGGFLSLTGYKLEQVLGRNCRFLQGPRTDARAVGKIREAIKHG 61
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++ LLNYK D T FW F ++ + G +F+ VQ+ +
Sbjct: 62 TDVQICLLNYKIDSTTFWNHFFIA-ALRDDAGDVVNFLGVQIEV 104
Score = 95.5 bits (236), Expect = 4e-17, Method: Composition-based stats.
Identities = 42/95 (44%), Positives = 64/95 (67%)
Query: 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQT 311
+SFV+ DP LPD P+V+AS FL LTGY +V+G+NCRFL G TD + +I+E+I+
Sbjct: 1 RSFVITDPTLPDNPIVFASGGFLSLTGYKLEQVLGRNCRFLQGPRTDARAVGKIREAIKH 60
Query: 312 EQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +LNY+ D ++FWN I+ +R+ +G V+
Sbjct: 61 GTDVQICLLNYKIDSTTFWNHFFIAALRDDAGDVV 95
>gi|326318271|ref|YP_004235943.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323375107|gb|ADX47376.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 544
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 67/104 (64%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP PD P+V+ + AF+ +TGY +++G NCRFL G TD +
Sbjct: 32 FFAAIETTRMPMLVTDPRQPDNPIVFCNRAFVSMTGYQPQDILGHNCRFLQGPATDRNTV 91
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
++E+I+ + ++ +LNYRKD S+FWN L ISP+ NA G+++
Sbjct: 92 AALREAIEQRREISLELLNYRKDGSTFWNALFISPVYNARGELV 135
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP +PIVF +R F+ M+G+ +I+G N R QGP T+R T+ +REAI + R I
Sbjct: 45 VTDPRQPDNPIVFCNRAFVSMTGYQPQDILGHNCRFLQGPATDRNTVAALREAIEQRREI 104
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ LLNY+KDG+ FW +S V+ G +F A Q+ + R+
Sbjct: 105 SLELLNYRKDGSTFWNALFISPVYNAR-GELVYFFASQLDVSRRR 148
>gi|408785836|ref|ZP_11197577.1| sensory box histidine kinase [Rhizobium lupini HPC(L)]
gi|408488304|gb|EKJ96617.1| sensory box histidine kinase [Rhizobium lupini HPC(L)]
Length = 369
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 64/96 (66%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ DP PD P+++ + AF LTGY+ E++G+NCR L G TD + ++++++
Sbjct: 36 RMPMLITDPRQPDNPIIFCNKAFCTLTGYEVGELIGRNCRLLQGPQTDPDAVTKLRDAVA 95
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+++ V ILNYRKD S FWN L +SP+R+ SG V+
Sbjct: 96 SQKDIAVDILNYRKDGSKFWNALFVSPVRDVSGAVI 131
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 53/75 (70%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP +PI+F ++ F ++G+ E+IGRN R+ QGP+T+ + ++R+A+ ++ I
Sbjct: 41 ITDPRQPDNPIIFCNKAFCTLTGYEVGELIGRNCRLLQGPQTDPDAVTKLRDAVASQKDI 100
Query: 93 EVNLLNYKKDGTPFW 107
V++LNY+KDG+ FW
Sbjct: 101 AVDILNYRKDGSKFW 115
>gi|448689107|ref|ZP_21694844.1| HTR-like protein [Haloarcula japonica DSM 6131]
gi|445778977|gb|EMA29919.1| HTR-like protein [Haloarcula japonica DSM 6131]
Length = 726
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 63/92 (68%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
+ DP PD P++YA+D + LTGY +E++G+NCR L G +TD + +++++I E+
Sbjct: 285 TITDPDQPDNPLIYANDHYRDLTGYSLSELLGKNCRILQGENTDPAPVTRMRDAIDAEER 344
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
TV + NYRKD + FWN +HI+P+R+ G V+
Sbjct: 345 VTVELRNYRKDGTEFWNRVHIAPVRDDDGAVV 376
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P TITDP +P+++A+ + ++G+S +E++G+N R+ QG T+ + +
Sbjct: 276 AIDEAPVGVTITDPDQPDNPLIYANDHYRDLTGYSLSELLGKNCRILQGENTDPAPVTRM 335
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
R+AI E + V L NY+KDGT FW ++ V +DG ++V Q I
Sbjct: 336 RDAIDAEERVTVELRNYRKDGTEFWNRVHIAPVR-DDDGAVVNYVGFQQDIT 386
>gi|449135813|ref|ZP_21771246.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula europaea 6C]
gi|448885516|gb|EMB15954.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula europaea 6C]
Length = 1739
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 63/92 (68%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
FV++D D P+VYA+ F LTG+ E+VG+NCRFL G TD + + I+++IQ +Q
Sbjct: 993 FVIVDAQAKDTPIVYANQGFFNLTGFAPEEIVGRNCRFLQGPQTDPSNVDMIRDAIQKKQ 1052
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
C V +LNYR+D S F+N L I+PI+++ G V
Sbjct: 1053 ECRVTLLNYRRDGSQFYNDLIITPIQDSQGVV 1084
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D + F I D PIV+A++GF ++GF+ EI+GRN R QGP+T+ + I
Sbjct: 985 AIDAASNGFVIVDAQAKDTPIVYANQGFFNLTGFAPEEIVGRNCRFLQGPQTDPSNVDMI 1044
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
R+AI++++ V LLNY++DG+ F+ ++ + + G THFV VQ
Sbjct: 1045 RDAIQKKQECRVTLLNYRRDGSQFYNDLIITPIQDSQ-GVVTHFVGVQ 1091
>gi|197311343|gb|ACH61904.1| putative blue light receptor protein [bacterium enrichment culture
clone pWThLOV]
Length = 1204
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 66/98 (67%)
Query: 248 GRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKE 307
G ++D PD P+VY + AF +LTGY R+EV+G+NCRFL G +TD L Q++E
Sbjct: 438 GEASLPITVVDVLAPDHPVVYVNPAFERLTGYGRDEVLGRNCRFLQGPETDQPALGQVRE 497
Query: 308 SIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+++ ++ TV + NYRKD S F N LHI+P+ ++ G+V
Sbjct: 498 ALRHGRSTTVVLHNYRKDGSRFINELHIAPVHDSHGRV 535
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Query: 20 VHEALD-ELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRT 78
+H A++ E T+ D HP+V+ + F +++G+ R E++GRN R QGP T++
Sbjct: 432 MHRAIEGEASLPITVVDVLAPDHPVVYVNPAFERLTGYGRDEVLGRNCRFLQGPETDQPA 491
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+ ++REA+R R V L NY+KDG+ F ++ V GR THF+ VQ I R
Sbjct: 492 LGQVREALRHGRSTTVVLHNYRKDGSRFINELHIAPVHDSH-GRVTHFIGVQTDITER 548
>gi|424912642|ref|ZP_18336019.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae USDA 2370]
gi|392848673|gb|EJB01196.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae USDA 2370]
Length = 369
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 64/96 (66%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ DP PD P+++ + AF LTGY+ E++G+NCR L G TD + ++++++
Sbjct: 36 RMPMLITDPRQPDNPIIFCNKAFCTLTGYEVGELIGRNCRLLQGPQTDPDAVTKLRDAVA 95
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+++ V ILNYRKD S FWN L +SP+R+ SG V+
Sbjct: 96 SQKDIAVDILNYRKDGSKFWNALFVSPVRDVSGAVI 131
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 53/75 (70%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP +PI+F ++ F ++G+ E+IGRN R+ QGP+T+ + ++R+A+ ++ I
Sbjct: 41 ITDPRQPDNPIIFCNKAFCTLTGYEVGELIGRNCRLLQGPQTDPDAVTKLRDAVASQKDI 100
Query: 93 EVNLLNYKKDGTPFW 107
V++LNY+KDG+ FW
Sbjct: 101 AVDILNYRKDGSKFW 115
>gi|170740287|ref|YP_001768942.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
gi|168194561|gb|ACA16508.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
Length = 812
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 65/104 (62%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ L R +Q + DP LPD P+V+A+ AF LTGY ++VG+NCR L G TD +
Sbjct: 28 FFTVLERTRQPMIFTDPRLPDNPIVFANPAFQALTGYGEADLVGRNCRLLQGPGTDPQTV 87
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+I+ ++ + V ILNYR+D +SFWN L + P+ + +G+++
Sbjct: 88 ARIRAAVAEGREARVAILNYRRDGTSFWNELFVCPVFDEAGRLI 131
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Query: 34 TDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIE 93
TDP + +PIVFA+ F ++G+ A+++GRN R+ QGP T+ +T+ IR A+ E R
Sbjct: 42 TDPRLPDNPIVFANPAFQALTGYGEADLVGRNCRLLQGPGTDPQTVARIRAAVAEGREAR 101
Query: 94 VNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
V +LNY++DGT FW + VF E GR +F A Q+
Sbjct: 102 VAILNYRRDGTSFWNELFVCPVF-DEAGRLINFFASQI 138
>gi|254410683|ref|ZP_05024462.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196182889|gb|EDX77874.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 483
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 58/84 (69%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
V+ D LPDMP++Y + AF ++TGY EV+G NCRFL G DT + Q++ +I+ +
Sbjct: 160 VIADARLPDMPLIYVNPAFEEITGYSDAEVLGYNCRFLQGKDTSQPAVDQLRAAIKAGEN 219
Query: 315 CTVRILNYRKDKSSFWNLLHISPI 338
CTV +LNYRKD + FWN L ISPI
Sbjct: 220 CTVTLLNYRKDGTPFWNELTISPI 243
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 32 TITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91
I D + P+++ + F +++G+S AE++G N R QG T++ + ++R AI+
Sbjct: 160 VIADARLPDMPLIYVNPAFEEITGYSDAEVLGYNCRFLQGKDTSQPAVDQLRAAIKAGEN 219
Query: 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
V LLNY+KDGTPFW +S ++ + THFV +Q I R
Sbjct: 220 CTVTLLNYRKDGTPFWNELTISPIY-DDHNNLTHFVGIQSDISDR 263
>gi|383875527|pdb|3ULF|A Chain A, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
gi|383875528|pdb|3ULF|B Chain B, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
gi|383875529|pdb|3ULF|C Chain C, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
gi|383875530|pdb|3ULF|D Chain D, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
gi|383875531|pdb|3ULF|E Chain E, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
gi|383875532|pdb|3ULF|F Chain F, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
Length = 170
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 71/105 (67%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
SL +L +Q+FV+ D LPD P+VYAS FL LTGY ++++G+NCRFL G +TD
Sbjct: 40 SLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRA 99
Query: 302 LYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+ +I +V +LNYR+D ++FWNL ++ +R++ G ++
Sbjct: 100 VDKIRNAITKGVDTSVCLLNYRQDGTTFWNLFFVAGLRDSKGNIV 144
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 69/111 (62%), Gaps = 5/111 (4%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+AL +F ITD S+ +PIV+ASRGFL ++G+S +I+GRN R QGP T+ R + +
Sbjct: 43 KALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDK 102
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED--GRATHFVAVQ 130
IR AI + V LLNY++DGT FW LF V G D G ++V VQ
Sbjct: 103 IRNAITKGVDTSVCLLNYRQDGTTFWNLF---FVAGLRDSKGNIVNYVGVQ 150
>gi|344211764|ref|YP_004796084.1| HTR-like protein [Haloarcula hispanica ATCC 33960]
gi|343783119|gb|AEM57096.1| HTR-like protein [Haloarcula hispanica ATCC 33960]
Length = 748
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 124/259 (47%), Gaps = 28/259 (10%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ A+DE P TIT P +PI +A+R FL+++G++ +E+ GRN R QG T +
Sbjct: 257 IKRAMDEAPVGITITSPEQDDNPITYANRQFLELTGYTESEVYGRNCRFLQGEETESEPV 316
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+R AI + P+ V L NY+KDGT FW ++ V +DG ++V Q I RK
Sbjct: 317 DAMRAAIDADEPVSVELRNYRKDGTMFWNQVTIAPVR-DDDGTVVNYVGFQQDITERKEH 375
Query: 140 RNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDL 199
+ + SE ++ ++ R EV + VL L+++ + + D + + L
Sbjct: 376 EHRLRALSE-----SVQNLLQADTREEVAEIGVDTACTVLGLEAN--TIHLYDEGDRT-L 427
Query: 200 EKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDP 259
E A+ AI ++L L ++ PG G I+ +Y S + V DP
Sbjct: 428 EPVAASDAIYDLLDDLPTFT--------------PG-GSIAWRVYESGDALAVDDVHADP 472
Query: 260 HL--PDMPMVYASDAFLKL 276
+ PD P+ S+ +L L
Sbjct: 473 DIYNPDTPI--KSELYLPL 489
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 65/107 (60%), Gaps = 7/107 (6%)
Query: 247 LGRIKQSF-------VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
L RIK++ + P D P+ YA+ FL+LTGY +EV G+NCRFL G +T++
Sbjct: 254 LSRIKRAMDEAPVGITITSPEQDDNPITYANRQFLELTGYTESEVYGRNCRFLQGEETES 313
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ ++ +I ++ +V + NYRKD + FWN + I+P+R+ G V+
Sbjct: 314 EPVDAMRAAIDADEPVSVELRNYRKDGTMFWNQVTIAPVRDDDGTVV 360
>gi|433774135|ref|YP_007304602.1| PAS domain S-box [Mesorhizobium australicum WSM2073]
gi|433666150|gb|AGB45226.1| PAS domain S-box [Mesorhizobium australicum WSM2073]
Length = 367
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 64/98 (65%)
Query: 249 RIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKES 308
R + V+ D D P+V A+ AFL LTG+ +EV+G+NCRFL G T T + +I+ +
Sbjct: 52 RTRMPIVITDARQADNPIVLANRAFLDLTGFTSDEVLGRNCRFLQGEGTSPTAVAEIRAA 111
Query: 309 IQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
I+ ++ V ILN+RKD S FWN LH+SPI++ G +L
Sbjct: 112 IERQREANVEILNFRKDGSPFWNQLHLSPIKDDEGGLL 149
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
ITD + +PIV A+R FL ++GF+ E++GRN R QG T+ + EIR AI +R
Sbjct: 57 IVITDARQADNPIVLANRAFLDLTGFTSDEVLGRNCRFLQGEGTSPTAVAEIRAAIERQR 116
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSE 148
V +LN++KDG+PFW +S + E G +F A Q+ + KH + SE
Sbjct: 117 EANVEILNFRKDGSPFWNQLHLSPIKDDEGGLLYYF-ASQIDVT--KHRMIQSLEASE 171
>gi|383875517|pdb|3UE6|A Chain A, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
gi|383875518|pdb|3UE6|B Chain B, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
gi|383875519|pdb|3UE6|C Chain C, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
gi|383875520|pdb|3UE6|D Chain D, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
gi|383875521|pdb|3UE6|E Chain E, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
gi|383875522|pdb|3UE6|F Chain F, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
Length = 166
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 71/105 (67%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
SL +L +Q+FV+ D LPD P+VYAS FL LTGY ++++G+NCRFL G +TD
Sbjct: 36 SLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRA 95
Query: 302 LYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+ +I +V +LNYR+D ++FWNL ++ +R++ G ++
Sbjct: 96 VDKIRNAITKGVDTSVCLLNYRQDGTTFWNLFFVAGLRDSKGNIV 140
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 69/111 (62%), Gaps = 5/111 (4%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+AL +F ITD S+ +PIV+ASRGFL ++G+S +I+GRN R QGP T+ R + +
Sbjct: 39 KALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDK 98
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED--GRATHFVAVQ 130
IR AI + V LLNY++DGT FW LF V G D G ++V VQ
Sbjct: 99 IRNAITKGVDTSVCLLNYRQDGTTFWNLF---FVAGLRDSKGNIVNYVGVQ 146
>gi|300311768|ref|YP_003775860.1| PAS/PAC sensor hybrid histidine kinase [Herbaspirillum seropedicae
SmR1]
gi|300074553|gb|ADJ63952.1| PAS/PAC sensor hybrid histidine kinase protein [Herbaspirillum
seropedicae SmR1]
Length = 552
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 69/107 (64%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
I+ + ++ + ++ DP+ PD P+V+ ++AF+ +TGY EVVG+NCRFL G +TD
Sbjct: 41 INDIFFAAVEMTRMPMIVSDPNRPDNPIVFVNNAFINMTGYSSAEVVGKNCRFLQGPETD 100
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+V+ +++ ++ + +LNYRK+ S+FWN L ISP+ + G +
Sbjct: 101 RSVVAEVRRAVAERREIATELLNYRKNGSTFWNALFISPVYDQQGNL 147
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
++DP+ +PIVF + F+ M+G+S AE++G+N R QGP T+R + E+R A+ E R I
Sbjct: 58 VSDPNRPDNPIVFVNNAFINMTGYSSAEVVGKNCRFLQGPETDRSVVAEVRRAVAERREI 117
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
LLNY+K+G+ FW +S V+ ++ G +F + Q+ I R+
Sbjct: 118 ATELLNYRKNGSTFWNALFISPVYDQQ-GNLKYFFSSQLDISRRR 161
>gi|424794274|ref|ZP_18220263.1| Sensory box histidine kinase/response regulator [Xanthomonas
translucens pv. graminis ART-Xtg29]
gi|422796051|gb|EKU24636.1| Sensory box histidine kinase/response regulator [Xanthomonas
translucens pv. graminis ART-Xtg29]
Length = 542
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 64/107 (59%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + ++ DP D P+V+ + AFL++TGY E++G NCRFL G DTD
Sbjct: 27 SDIFFAAVETTRMPMIVTDPRQADNPIVFVNRAFLEMTGYSSEELLGNNCRFLQGPDTDR 86
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ ++E+I V ILNYRKD SSFWN L ISP+ N +++
Sbjct: 87 DTVDSVREAIAARSEVAVEILNYRKDGSSFWNALFISPVYNEHSELV 133
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP + +PIVF +R FL+M+G+S E++G N R QGP T+R T+ +REAI +
Sbjct: 43 VTDPRQADNPIVFVNRAFLEMTGYSSEELLGNNCRFLQGPDTDRDTVDSVREAIAARSEV 102
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
V +LNY+KDG+ FW +S V+ E ++ Q+ + R+ ++
Sbjct: 103 AVEILNYRKDGSSFWNALFISPVY-NEHSELVYYFGSQLDVSRRRDTEDA 151
>gi|376004225|ref|ZP_09781972.1| putative two-component sensor histidine kinase [Arthrospira sp. PCC
8005]
gi|375327431|emb|CCE17725.1| putative two-component sensor histidine kinase [Arthrospira sp. PCC
8005]
Length = 1240
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 59/83 (71%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322
D+P++Y + AF KLTGY + EV+GQNCRFL G +T + I++SI+ +Q C V + NY
Sbjct: 366 DLPIIYCNAAFEKLTGYTKEEVIGQNCRFLQGPETHEDAIAMIRQSIKRKQGCKVTLKNY 425
Query: 323 RKDKSSFWNLLHISPIRNASGKV 345
RK+ S FWN L ISP+R+ GK+
Sbjct: 426 RKNGSCFWNELAISPVRDHRGKL 448
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 73/123 (59%), Gaps = 1/123 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ A++ P+ I++ + + PI++ + F K++G+++ E+IG+N R QGP T+ I
Sbjct: 346 LQRAIEASPNGIVISENTKNDLPIIYCNAAFEKLTGYTKEEVIGQNCRFLQGPETHEDAI 405
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
IR++I+ ++ +V L NY+K+G+ FW +S V G+ THF+ +Q I RK
Sbjct: 406 AMIRQSIKRKQGCKVTLKNYRKNGSCFWNELAISPVRDHR-GKLTHFIGIQTDITERKQS 464
Query: 140 RNS 142
++
Sbjct: 465 EDA 467
>gi|423065965|ref|ZP_17054755.1| putative two-component sensor histidine kinase [Arthrospira
platensis C1]
gi|406712464|gb|EKD07649.1| putative two-component sensor histidine kinase [Arthrospira
platensis C1]
Length = 1240
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 59/83 (71%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322
D+P++Y + AF KLTGY + EV+GQNCRFL G +T + I++SI+ +Q C V + NY
Sbjct: 366 DLPIIYCNAAFEKLTGYTKEEVIGQNCRFLQGPETHEDAIAMIRQSIKRKQGCKVTLKNY 425
Query: 323 RKDKSSFWNLLHISPIRNASGKV 345
RK+ S FWN L ISP+R+ GK+
Sbjct: 426 RKNGSCFWNELAISPVRDHRGKL 448
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 73/123 (59%), Gaps = 1/123 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ A++ P+ I++ + + PI++ + F K++G+++ E+IG+N R QGP T+ I
Sbjct: 346 LQRAIEASPNGIVISENTKNDLPIIYCNAAFEKLTGYTKEEVIGQNCRFLQGPETHEDAI 405
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
IR++I+ ++ +V L NY+K+G+ FW +S V G+ THF+ +Q I RK
Sbjct: 406 AMIRQSIKRKQGCKVTLKNYRKNGSCFWNELAISPVRDHR-GKLTHFIGIQTDITERKQS 464
Query: 140 RNS 142
++
Sbjct: 465 EDA 467
>gi|418062700|ref|ZP_12700460.1| signal transduction histidine kinase [Methylobacterium extorquens
DSM 13060]
gi|373563746|gb|EHP89914.1| signal transduction histidine kinase [Methylobacterium extorquens
DSM 13060]
Length = 492
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 90/168 (53%), Gaps = 10/168 (5%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ + +PIVFA+ F K++G++R EI+GRN R QGP TN + IR+AI PI
Sbjct: 37 VTDPNRTDNPIVFANAAFTKLTGYTRDEILGRNCRFLQGPETNPYDVARIRDAIERRVPI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ--VPIVSRKHMRNSG-MSYSED 149
E+ LLN+KKDG FW +S VF + DG T+F A Q V + K +R G ++ ED
Sbjct: 97 EIELLNHKKDGEVFWNRLLVSPVFDR-DGALTYFFASQFDVTLERNKLVRLQGELAALED 155
Query: 150 GGGSRLREIVFGSCRREVCSDSLLDLDRV--LALDSDDTGLEIEDSCE 195
R E+ R L R+ LD D LE D C+
Sbjct: 156 EVARRKAELARTDDRMRFA----LKAGRIGSWTLDLADRRLEASDICK 199
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 63/95 (66%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ DP+ D P+V+A+ AF KLTGY R+E++G+NCRFL G +T+ + +I+++I+
Sbjct: 32 RMPMLVTDPNRTDNPIVFANAAFTKLTGYTRDEILGRNCRFLQGPETNPYDVARIRDAIE 91
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +LN++KD FWN L +SP+ + G +
Sbjct: 92 RRVPIEIELLNHKKDGEVFWNRLLVSPVFDRDGAL 126
>gi|291570657|dbj|BAI92929.1| two-component sensor histidine kinase [Arthrospira platensis
NIES-39]
Length = 1240
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 77/123 (62%), Gaps = 1/123 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ A++ P+ I++ S + I++ + GF K++G+++ E++G+N R QGP TNR +I
Sbjct: 346 LQRAIEASPNGIVISESSNNDLQIIYCNAGFEKLTGYTKEEVVGQNCRFLQGPDTNRDSI 405
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
IR AI++E+ +VNL NY+KDG+ FW +S V + G+ THF+ +Q I RK
Sbjct: 406 AIIRRAIKQEKGCKVNLKNYRKDGSCFWNELAISPVRDHQ-GKLTHFIGIQTDITERKQS 464
Query: 140 RNS 142
++
Sbjct: 465 EDA 467
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 57/83 (68%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322
D+ ++Y + F KLTGY + EVVGQNCRFL G DT+ + I+ +I+ E+ C V + NY
Sbjct: 366 DLQIIYCNAGFEKLTGYTKEEVVGQNCRFLQGPDTNRDSIAIIRRAIKQEKGCKVNLKNY 425
Query: 323 RKDKSSFWNLLHISPIRNASGKV 345
RKD S FWN L ISP+R+ GK+
Sbjct: 426 RKDGSCFWNELAISPVRDHQGKL 448
>gi|413959779|ref|ZP_11399010.1| histidine kinase [Burkholderia sp. SJ98]
gi|413939729|gb|EKS71697.1| histidine kinase [Burkholderia sp. SJ98]
Length = 403
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 65/104 (62%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ D P+V+ + AFL LTGYD E++G NCR L G +T +
Sbjct: 23 FFAAVSTTRMPMLVTDPNQVDNPIVFVNSAFLNLTGYDVEELMGNNCRLLQGPETSRATI 82
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+I+++I + ILNYRKD SSFWN L ISP+RN +G ++
Sbjct: 83 SEIRDAIAEGREINTEILNYRKDGSSFWNALFISPVRNEAGDIV 126
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PIVF + FL ++G+ E++G N R+ QGP T+R TI EIR+AI E R I
Sbjct: 36 VTDPNQVDNPIVFVNSAFLNLTGYDVEELMGNNCRLLQGPETSRATISEIRDAIAEGREI 95
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+LNY+KDG+ FW +S V E G ++ A Q+ I R+
Sbjct: 96 NTEILNYRKDGSSFWNALFISPV-RNEAGDIVYYFASQLDISRRR 139
>gi|209524032|ref|ZP_03272583.1| multi-sensor signal transduction histidine kinase [Arthrospira
maxima CS-328]
gi|209495407|gb|EDZ95711.1| multi-sensor signal transduction histidine kinase [Arthrospira
maxima CS-328]
Length = 1184
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 59/83 (71%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322
D+P++Y + AF KLTGY + EV+GQNCRFL G +T + I++SI+ +Q C V + NY
Sbjct: 366 DLPIIYCNAAFEKLTGYTKEEVIGQNCRFLQGPETHEDAIAMIRQSIKRKQGCKVTLKNY 425
Query: 323 RKDKSSFWNLLHISPIRNASGKV 345
RK+ S FWN L ISP+R+ GK+
Sbjct: 426 RKNGSCFWNELAISPVRDHRGKL 448
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 73/123 (59%), Gaps = 1/123 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ A++ P+ I++ + + PI++ + F K++G+++ E+IG+N R QGP T+ I
Sbjct: 346 LQRAIEASPNGIVISENTKNDLPIIYCNAAFEKLTGYTKEEVIGQNCRFLQGPETHEDAI 405
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
IR++I+ ++ +V L NY+K+G+ FW +S V G+ THF+ +Q I RK
Sbjct: 406 AMIRQSIKRKQGCKVTLKNYRKNGSCFWNELAISPVRDHR-GKLTHFIGIQTDITERKQS 464
Query: 140 RNS 142
++
Sbjct: 465 EDA 467
>gi|409990612|ref|ZP_11273963.1| multi-sensor signal transduction histidine kinase [Arthrospira
platensis str. Paraca]
gi|409938523|gb|EKN79836.1| multi-sensor signal transduction histidine kinase [Arthrospira
platensis str. Paraca]
Length = 1240
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 77/123 (62%), Gaps = 1/123 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ A++ P+ I++ S + I++ + GF K++G+++ E++G+N R QGP TNR +I
Sbjct: 346 LQRAIEASPNGIVISESSNNDLQIIYCNAGFEKLTGYTKEEVVGQNCRFLQGPDTNRDSI 405
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
IR AI++E+ +VNL NY+KDG+ FW +S V + G+ THF+ +Q I RK
Sbjct: 406 AIIRRAIKQEKGCKVNLKNYRKDGSCFWNELAISPVRDHQ-GKLTHFIGIQTDITERKQS 464
Query: 140 RNS 142
++
Sbjct: 465 EDA 467
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 57/83 (68%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322
D+ ++Y + F KLTGY + EVVGQNCRFL G DT+ + I+ +I+ E+ C V + NY
Sbjct: 366 DLQIIYCNAGFEKLTGYTKEEVVGQNCRFLQGPDTNRDSIAIIRRAIKQEKGCKVNLKNY 425
Query: 323 RKDKSSFWNLLHISPIRNASGKV 345
RKD S FWN L ISP+R+ GK+
Sbjct: 426 RKDGSCFWNELAISPVRDHQGKL 448
>gi|332186175|ref|ZP_08387921.1| sensory box protein [Sphingomonas sp. S17]
gi|332013990|gb|EGI56049.1| sensory box protein [Sphingomonas sp. S17]
Length = 524
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 69/107 (64%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S + ++ + ++ DP PD P+V+ ++AF +TGY +E++G NCRFL G +TD
Sbjct: 17 SDIFFAAVKTTRMPMIVTDPRQPDNPIVFCNEAFSFMTGYSEDEILGTNCRFLQGPETDR 76
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
V+ QI+ +++ V +LNYRK+ S+FWN L +SP+ + +G+++
Sbjct: 77 DVVAQIRAAVERRDEIAVELLNYRKNGSTFWNALFVSPVYDDAGELV 123
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP +PIVF + F M+G+S EI+G N R QGP T+R + +IR A+ I
Sbjct: 33 VTDPRQPDNPIVFCNEAFSFMTGYSEDEILGTNCRFLQGPETDRDVVAQIRAAVERRDEI 92
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
V LLNY+K+G+ FW +S V+ + G +F + Q+ I R+ ++
Sbjct: 93 AVELLNYRKNGSTFWNALFVSPVY-DDAGELVYFFSSQLDISRRREAEDA 141
>gi|448608055|ref|ZP_21659894.1| PAS sensor protein [Haloferax sulfurifontis ATCC BAA-897]
gi|445737097|gb|ELZ88635.1| PAS sensor protein [Haloferax sulfurifontis ATCC BAA-897]
Length = 737
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE TIT PS PIV+A+ F +++G+ EI+G N R+ QGP T+
Sbjct: 392 AIDEASVGITITGPSEDDCPIVYANAAFEELTGYDADEILGENHRVLQGPDTDEEECERF 451
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
REAI +E P + LLNY++DGTPFW +++ V G +DGR +++ Q + R
Sbjct: 452 REAIADEEPCSIELLNYRRDGTPFWNHCEITPVHG-DDGRVANYIGFQREVTERN 505
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 57/87 (65%)
Query: 259 PHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVR 318
P D P+VYA+ AF +LTGYD +E++G+N R L G DTD + +E+I E+ C++
Sbjct: 405 PSEDDCPIVYANAAFEELTGYDADEILGENHRVLQGPDTDEEECERFREAIADEEPCSIE 464
Query: 319 ILNYRKDKSSFWNLLHISPIRNASGKV 345
+LNYR+D + FWN I+P+ G+V
Sbjct: 465 LLNYRRDGTPFWNHCEITPVHGDDGRV 491
>gi|209547274|ref|YP_002279192.1| hypothetical protein Rleg2_5263 [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209538518|gb|ACI58452.1| signal transduction histidine kinase [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 345
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 63/102 (61%)
Query: 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQ 304
++ R + V+ D PD+P+V A+ +FL LTGY +EVVG+NCRFL T + +
Sbjct: 31 VAFERTRMPMVVTDARKPDLPIVLANKSFLDLTGYAADEVVGRNCRFLQRPATSPIAVAE 90
Query: 305 IKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
I+ SI E+ +V ILNY+K FWN LH+SPI G++L
Sbjct: 91 IRASIAEERDVSVEILNYKKSGEPFWNRLHLSPIHGDDGRIL 132
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+TD PIV A++ FL ++G++ E++GRN R Q P T+ + EIR +I EER
Sbjct: 40 MVVTDARKPDLPIVLANKSFLDLTGYAADEVVGRNCRFLQRPATSPIAVAEIRASIAEER 99
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+ V +LNYKK G PFW +S + G +DGR +F Q+
Sbjct: 100 DVSVEILNYKKSGEPFWNRLHLSPIHG-DDGRILYFFGSQI 139
>gi|448327694|ref|ZP_21517016.1| bacterio-opsin activator [Natrinema versiforme JCM 10478]
gi|445617323|gb|ELY70921.1| bacterio-opsin activator [Natrinema versiforme JCM 10478]
Length = 631
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P TI+DP +P+V+ + + +++G+ +++GRN R QGP ++ I E+
Sbjct: 134 AIEEAPVGITISDPDREDNPLVYVNEAYEEITGYQYDDVVGRNCRFLQGPDSDEDAIAEM 193
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
AI E+RPI V L NY+KDGT FW ++ + E GR T++V Q + SRK
Sbjct: 194 AAAIDEDRPITVELTNYRKDGTEFWNEVTIAPIRDDE-GRVTNYVGFQNDVTSRKEA 249
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 61/92 (66%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ DP D P+VY ++A+ ++TGY ++VVG+NCRFL G D+D + ++ +I ++
Sbjct: 142 ITISDPDREDNPLVYVNEAYEEITGYQYDDVVGRNCRFLQGPDSDEDAIAEMAAAIDEDR 201
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV + NYRKD + FWN + I+PIR+ G+V
Sbjct: 202 PITVELTNYRKDGTEFWNEVTIAPIRDDEGRV 233
>gi|393720787|ref|ZP_10340714.1| multi-sensor hybrid histidine kinase [Sphingomonas echinoides ATCC
14820]
Length = 870
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 71/109 (65%), Gaps = 2/109 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +P+VFA+ F ++SG+ R EI+GRN R QGP++N T+ IREA+ P+
Sbjct: 57 ITNPRLPDNPVVFANNAFCRLSGYPRDEILGRNCRFLQGPKSNPATVRRIREAVERVEPL 116
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI-VSRKHMR 140
E+++LN++KDG FW M+ VF E G +F A QV + + R+ ++
Sbjct: 117 EIDILNHRKDGETFWNRLLMAPVFDTE-GVLAYFFASQVDVTIERERLK 164
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 65/93 (69%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ +P LPD P+V+A++AF +L+GY R+E++G+NCRFL G ++ + +I+E+++
Sbjct: 52 RMPMIITNPRLPDNPVVFANNAFCRLSGYPRDEILGRNCRFLQGPKSNPATVRRIREAVE 111
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+ + ILN+RKD +FWN L ++P+ + G
Sbjct: 112 RVEPLEIDILNHRKDGETFWNRLLMAPVFDTEG 144
>gi|435846163|ref|YP_007308413.1| PAS/PAC sensor hybrid histidine kinase [Natronococcus occultus SP4]
gi|433672431|gb|AGB36623.1| PAS/PAC sensor hybrid histidine kinase [Natronococcus occultus SP4]
Length = 634
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 70/117 (59%), Gaps = 2/117 (1%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+DE P ITDPS +PI +A++GF++++G+ R E +GRN R QG T + +
Sbjct: 27 EQAMDEAPVGILITDPSQPDNPITYANQGFVRLTGYPREEAVGRNCRFLQGDETAQEPVD 86
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+R AI + V LLNY++DG PFW ++ +F ++ THFV +Q + RK
Sbjct: 87 RMRTAIDAGERVTVELLNYRRDGEPFWNRVTVAPLFDGDE--LTHFVGIQQDVTERK 141
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 55/85 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ DP PD P+ YA+ F++LTGY R E VG+NCRFL G +T + +++ +I +
Sbjct: 37 ILITDPSQPDNPITYANQGFVRLTGYPREEAVGRNCRFLQGDETAQEPVDRMRTAIDAGE 96
Query: 314 ACTVRILNYRKDKSSFWNLLHISPI 338
TV +LNYR+D FWN + ++P+
Sbjct: 97 RVTVELLNYRRDGEPFWNRVTVAPL 121
>gi|23098043|ref|NP_691509.1| protein kinase [Oceanobacillus iheyensis HTE831]
gi|22776268|dbj|BAC12544.1| protein kinase [Oceanobacillus iheyensis HTE831]
Length = 264
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL+ +TDPSI +PIV A++GFL+++G+ EIIG+N R QG T+ +I
Sbjct: 12 LEKALNYTRVGIIVTDPSIEDNPIVIANKGFLELTGYEEHEIIGKNCRFLQGKDTDNISI 71
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
++R+AI+ + PI + + NYKKDGT FW + ++ +++G+ FV VQ I + K
Sbjct: 72 KQLRDAIQNKEPITIQIYNYKKDGTGFWNELSIDHMWDEQEGKY-FFVGVQKDITNEKQ 129
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 62/90 (68%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + ++ DP + D P+V A+ FL+LTGY+ +E++G+NCRFL G DTD + Q+
Sbjct: 15 ALNYTRVGIIVTDPSIEDNPIVIANKGFLELTGYEEHEIIGKNCRFLQGKDTDNISIKQL 74
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHI 335
+++IQ ++ T++I NY+KD + FWN L I
Sbjct: 75 RDAIQNKEPITIQIYNYKKDGTGFWNELSI 104
>gi|428303722|ref|YP_007140547.1| multi-sensor signal transduction histidine kinase [Crinalium
epipsammum PCC 9333]
gi|428245257|gb|AFZ11037.1| multi-sensor signal transduction histidine kinase [Crinalium
epipsammum PCC 9333]
Length = 973
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 73/120 (60%), Gaps = 1/120 (0%)
Query: 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRR 77
L + +A+ + D ITDP +PI++ + F K++G++ +I+G N R QG T+ +
Sbjct: 65 LQLGQAVISVSDGIIITDPHQPNNPIIYINPAFTKITGYTAQDILGENCRCLQGKETDPQ 124
Query: 78 TIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
I IREAI ++ P++V LLNY+KDG PFW K+S VF ++ +F+ +Q I RK
Sbjct: 125 AIELIREAISKKEPVQVTLLNYRKDGQPFWNELKISPVFSDQEN-LLYFIGIQTDITERK 183
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 57/89 (64%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+ ++ DPH P+ P++Y + AF K+TGY +++G+NCR L G +TD + I+E+I
Sbjct: 74 VSDGIIITDPHQPNNPIIYINPAFTKITGYTAQDILGENCRCLQGKETDPQAIELIREAI 133
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPI 338
++ V +LNYRKD FWN L ISP+
Sbjct: 134 SKKEPVQVTLLNYRKDGQPFWNELKISPV 162
>gi|448589464|ref|ZP_21649623.1| bacterio-opsin activator [Haloferax elongans ATCC BAA-1513]
gi|445735892|gb|ELZ87440.1| bacterio-opsin activator [Haloferax elongans ATCC BAA-1513]
Length = 661
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P TI+D S+ HP+V+A+ F M+G++ E +GRN R QG +TN+ + E+
Sbjct: 136 AMDEAPVGITISDGSLPDHPLVYANDAFESMTGYTVEEALGRNCRYLQGNKTNQERVAEL 195
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R AI E V LLNY++ G+ FW ++ + G DG TH+V Q I R +
Sbjct: 196 RRAIDAEESASVELLNYRRGGSTFWNRVDIAPLPGP-DGSVTHYVGFQTDITERVRAEQA 254
Query: 143 GMSYS 147
Y+
Sbjct: 255 AERYA 259
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 58/88 (65%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTV 317
D LPD P+VYA+DAF +TGY E +G+NCR+L G T+ + +++ +I E++ +V
Sbjct: 148 DGSLPDHPLVYANDAFESMTGYTVEEALGRNCRYLQGNKTNQERVAELRRAIDAEESASV 207
Query: 318 RILNYRKDKSSFWNLLHISPIRNASGKV 345
+LNYR+ S+FWN + I+P+ G V
Sbjct: 208 ELLNYRRGGSTFWNRVDIAPLPGPDGSV 235
>gi|385333891|ref|YP_005887842.1| sensory box/GGDEF family protein [Marinobacter adhaerens HP15]
gi|311697041|gb|ADP99914.1| sensory box/GGDEF family protein [Marinobacter adhaerens HP15]
Length = 552
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 63/93 (67%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
S ++I + D P++Y +DAF LTGY+R E++G+NCRFL G +T TV+ IK +I
Sbjct: 17 SGIVISSCVEDFPIIYCNDAFCSLTGYERPEIMGKNCRFLQGEETSQTVIGSIKSAIAQS 76
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ + I NYRKD ++FWN L+++PIRN G V
Sbjct: 77 KTHRIVIKNYRKDGAAFWNDLYLTPIRNGKGSV 109
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+S + + PI++ + F ++G+ R EI+G+N R QG T++ I I+ AI +
Sbjct: 16 NSGIVISSCVEDFPIIYCNDAFCSLTGYERPEIMGKNCRFLQGEETSQTVIGSIKSAIAQ 75
Query: 89 ERPIEVNLLNYKKDGTPFWM-LFKMSLVFGKEDGRATHFVAVQ 130
+ + + NY+KDG FW L+ + GK G TH++ +Q
Sbjct: 76 SKTHRIVIKNYRKDGAAFWNDLYLTPIRNGK--GSVTHYLGIQ 116
>gi|310794734|gb|EFQ30195.1| hypothetical protein GLRG_05339 [Glomerella graminicola M1.001]
Length = 876
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 67/104 (64%), Gaps = 3/104 (2%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
+S Y LG F L +P L D P+V+ASD F+K+TGY R E++ +NCRFL GV TD
Sbjct: 559 NSRTYQGLG---DCFCLTNPGLADNPIVFASDGFIKVTGYTRPEIIPRNCRFLQGVHTDR 615
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+ ++K +I+ + +LNY+K+ FWNLL+++P+ N SG
Sbjct: 616 EPVRRLKAAIEARKESVELLLNYKKNGDPFWNLLYVAPLYNESG 659
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L D F +T+P ++ +PIVFAS GF+K++G++R EII RN R QG T+R + ++ AI
Sbjct: 566 LGDCFCLTNPGLADNPIVFASDGFIKVTGYTRPEIIPRNCRFLQGVHTDREPVRRLKAAI 625
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+ LLNYKK+G PFW L ++ ++ E G + F+ Q+
Sbjct: 626 EARKESVELLLNYKKNGDPFWNLLYVAPLYN-ESGMLSFFLGGQI 669
>gi|310639274|ref|YP_003944033.1| signal transduction histidine kinase [Ketogulonicigenium vulgare
Y25]
gi|385235391|ref|YP_005796731.1| putative sensory transduction histidine kinase of the HWE family
protein [Ketogulonicigenium vulgare WSH-001]
gi|308752850|gb|ADO43994.1| signal transduction histidine kinase [Ketogulonicigenium vulgare
Y25]
gi|343464086|gb|AEM42520.1| putative sensory transduction histidine kinase of the HWE family
protein [Ketogulonicigenium vulgare WSH-001]
Length = 483
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 68/111 (61%), Gaps = 1/111 (0%)
Query: 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR 87
P +TDP +PIVF + F ++G+ R ++IGRN R QGP TNR I +R AI
Sbjct: 30 PMPMLVTDPRRPDNPIVFVNAAFCALTGYERDDVIGRNCRFLQGPGTNRGDIARLRTAIA 89
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+ +PIE++LLNY+KDG+ FW +S VF DG+A +F A Q I ++
Sbjct: 90 DRQPIELDLLNYRKDGSSFWNRLVVSPVFAG-DGQALYFTASQFDISPERN 139
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 72/125 (57%), Gaps = 3/125 (2%)
Query: 225 LVCGKRCSLP---GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDR 281
++ G + P G F + +I+ ++ DP PD P+V+ + AF LTGY+R
Sbjct: 1 MMSGTQAVQPESLGREFEGNPFFIAALATPMPMLVTDPRRPDNPIVFVNAAFCALTGYER 60
Query: 282 NEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNA 341
++V+G+NCRFL G T+ + +++ +I Q + +LNYRKD SSFWN L +SP+
Sbjct: 61 DDVIGRNCRFLQGPGTNRGDIARLRTAIADRQPIELDLLNYRKDGSSFWNRLVVSPVFAG 120
Query: 342 SGKVL 346
G+ L
Sbjct: 121 DGQAL 125
>gi|448621003|ref|ZP_21668080.1| PAS sensor protein [Haloferax denitrificans ATCC 35960]
gi|445756053|gb|EMA07429.1| PAS sensor protein [Haloferax denitrificans ATCC 35960]
Length = 719
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE TIT PS PIV+A+ F +++G+ EI+G N R+ QGP T+
Sbjct: 374 AIDEASVGITITGPSEDDCPIVYANAAFEELTGYDTDEILGENHRVLQGPDTDEAECERF 433
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
REAI +E P + LLNY++DGTPFW +++ V G +DGR +++ Q + R
Sbjct: 434 REAIADEEPCSIELLNYRRDGTPFWNHCEITPVHG-DDGRVANYIGFQREVTERN 487
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 57/87 (65%)
Query: 259 PHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVR 318
P D P+VYA+ AF +LTGYD +E++G+N R L G DTD + +E+I E+ C++
Sbjct: 387 PSEDDCPIVYANAAFEELTGYDTDEILGENHRVLQGPDTDEAECERFREAIADEEPCSIE 446
Query: 319 ILNYRKDKSSFWNLLHISPIRNASGKV 345
+LNYR+D + FWN I+P+ G+V
Sbjct: 447 LLNYRRDGTPFWNHCEITPVHGDDGRV 473
>gi|253574406|ref|ZP_04851747.1| diguanylate cyclase/phosphodiesterase [Paenibacillus sp. oral taxon
786 str. D14]
gi|251846111|gb|EES74118.1| diguanylate cyclase/phosphodiesterase [Paenibacillus sp. oral taxon
786 str. D14]
Length = 575
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 70/113 (61%)
Query: 234 PGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLN 293
P +S+L ++ R+ + +P+LPD P+VY + F K+TGY R EV+ +N RFL
Sbjct: 12 PEFMLTASALLQAIDRMGVGLAITNPNLPDNPLVYVNQGFEKITGYKREEVLNRNLRFLQ 71
Query: 294 GVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
G +T+ L I+++I+ A TV I NY+KD S+FWN ISPI +A G +L
Sbjct: 72 GKETNKEHLAVIRKAIKEIGAATVTIKNYKKDGSTFWNQFVISPILDAEGHLL 124
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+A+D + IT+P++ +P+V+ ++GF K++G+ R E++ RN R QG TN+ +
Sbjct: 23 QAIDRMGVGLAITNPNLPDNPLVYVNQGFEKITGYKREEVLNRNLRFLQGKETNKEHLAV 82
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
IR+AI+E V + NYKKDG+ FW F +S + E G +F+ +Q +
Sbjct: 83 IRKAIKEIGAATVTIKNYKKDGSTFWNQFVISPILDAE-GHLLYFIGLQFDVT 134
>gi|159897746|ref|YP_001543993.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
aurantiacus DSM 785]
gi|159890785|gb|ABX03865.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
aurantiacus DSM 785]
Length = 1877
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 66/93 (70%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V++DPH DMP+VY + AF ++TGY E++G+NCRFL G DTD L +++ +++ ++
Sbjct: 778 IVIVDPHQFDMPVVYVNPAFERITGYTPEEIIGKNCRFLQGDDTDQQGLRELRHAVREKR 837
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
A V + NYRKD S FWN L I+P+ + +G+++
Sbjct: 838 ATRVLLRNYRKDGSLFWNELDINPVFDENGELI 870
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
D I DP P+V+ + F +++G++ EIIG+N R QG T+++ + E+R A+RE
Sbjct: 776 DGIVIVDPHQFDMPVVYVNPAFERITGYTPEEIIGKNCRFLQGDDTDQQGLRELRHAVRE 835
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+R V L NY+KDG+ FW ++ VF E+G +F+ VQ + R
Sbjct: 836 KRATRVLLRNYRKDGSLFWNELDINPVF-DENGELINFIGVQQDVSER 882
>gi|120612211|ref|YP_971889.1| histidine kinase [Acidovorax citrulli AAC00-1]
gi|120590675|gb|ABM34115.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax citrulli
AAC00-1]
Length = 544
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 66/104 (63%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP PD P+V+ + AF+ +TGY +++G NCRFL G TD +
Sbjct: 32 FFAAIETTRMPMLVTDPRQPDNPIVFCNRAFVAMTGYQPQDILGHNCRFLQGPATDRNTV 91
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
++E+I + ++ +LNYRKD S+FWN L ISP+ NA G+++
Sbjct: 92 AALREAIDQRREISLELLNYRKDGSTFWNALFISPVYNARGELV 135
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP +PIVF +R F+ M+G+ +I+G N R QGP T+R T+ +REAI + R I
Sbjct: 45 VTDPRQPDNPIVFCNRAFVAMTGYQPQDILGHNCRFLQGPATDRNTVAALREAIDQRREI 104
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ LLNY+KDG+ FW +S V+ G +F A Q+ + R+
Sbjct: 105 SLELLNYRKDGSTFWNALFISPVYNAR-GELVYFFASQLDVSRRR 148
>gi|75910072|ref|YP_324368.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
[Anabaena variabilis ATCC 29413]
gi|75703797|gb|ABA23473.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Anabaena variabilis ATCC 29413]
Length = 1021
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 65/100 (65%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L I VL D + PD P++Y + AF +TGY EV+GQNCRFL +TD L ++
Sbjct: 207 ALAAISNGIVLTDANQPDNPIIYVNQAFEAMTGYSAGEVIGQNCRFLQANETDQLSLSEL 266
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ ++Q ++ C V I N+RKD + FWN L+I+P+ ++ G++
Sbjct: 267 RSALQEKKECHVVIKNFRKDGTEFWNELYIAPVFDSCGQL 306
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 68/111 (61%), Gaps = 1/111 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +AL + + +TD + +PI++ ++ F M+G+S E+IG+N R Q T++ ++
Sbjct: 204 MEQALAAISNGIVLTDANQPDNPIIYVNQAFEAMTGYSAGEVIGQNCRFLQANETDQLSL 263
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
E+R A++E++ V + N++KDGT FW ++ VF G+ THF+ VQ
Sbjct: 264 SELRSALQEKKECHVVIKNFRKDGTEFWNELYIAPVFDS-CGQLTHFIGVQ 313
>gi|323449211|gb|EGB05101.1| hypothetical protein AURANDRAFT_38723 [Aureococcus anophagefferens]
Length = 157
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 68/105 (64%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
SL +L +Q+FV+ DP LPD P+V+AS FL LTGY V+G+NCRFL G TD
Sbjct: 43 SLVKALQTAQQNFVITDPSLPDNPIVFASHGFLTLTGYSLESVLGRNCRFLQGPRTDPRA 102
Query: 302 LYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I++++ +V +LNYR D S+F+N ++P+R+ G V+
Sbjct: 103 VAKIRKAVDEGYDTSVCLLNYRIDGSTFFNQFFVAPLRDGQGNVV 147
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 69/113 (61%), Gaps = 3/113 (2%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+AL +F ITDPS+ +PIVFAS GFL ++G+S ++GRN R QGPRT+ R + +
Sbjct: 46 KALQTAQQNFVITDPSLPDNPIVFASHGFLTLTGYSLESVLGRNCRFLQGPRTDPRAVAK 105
Query: 82 IREAIREERPIEVNLLNYKKDGTPFW-MLFKMSLVFGKEDGRATHFVAVQVPI 133
IR+A+ E V LLNY+ DG+ F+ F L G+ G ++V VQ +
Sbjct: 106 IRKAVDEGYDTSVCLLNYRIDGSTFFNQFFVAPLRDGQ--GNVVNYVGVQCQV 156
>gi|168702420|ref|ZP_02734697.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
2246]
Length = 1013
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+ + I+D HP+VFAS GF +++G++ AE++GRN + QG T+ + ++
Sbjct: 508 AIQAVTQGILISDAEHPDHPVVFASPGFERLTGYTAAEVMGRNWHLLQGRDTSAEAVAQV 567
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
R A+R P V LLNYKKDG+PFW +S V GR THF+ V + R+++ +
Sbjct: 568 RAAVRAGVPCAVELLNYKKDGSPFWSELSISPVR-DATGRLTHFIGVHTDVTRRRNLED 625
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 61/96 (63%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+ Q ++ D PD P+V+AS F +LTGY EV+G+N L G DT + Q++ ++
Sbjct: 512 VTQGILISDAEHPDHPVVFASPGFERLTGYTAAEVMGRNWHLLQGRDTSAEAVAQVRAAV 571
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ C V +LNY+KD S FW+ L ISP+R+A+G++
Sbjct: 572 RAGVPCAVELLNYKKDGSPFWSELSISPVRDATGRL 607
>gi|448320230|ref|ZP_21509718.1| bacterio-opsin activator [Natronococcus amylolyticus DSM 10524]
gi|445606636|gb|ELY60540.1| bacterio-opsin activator [Natronococcus amylolyticus DSM 10524]
Length = 618
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 71/116 (61%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P TI+DP+ +P+V+ + + +++G+S +++GRN R+ QG ++ I E+
Sbjct: 123 AINEAPVGITISDPNREDNPLVYINEAYEEITGYSYEDVVGRNCRLLQGEDSDPEAIAEM 182
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
R I EERP+ V L+NY+KDGT FW ++ V DG TH+V Q + RK
Sbjct: 183 RRGIGEERPVTVELVNYRKDGTAFWNEVTIAPVRNG-DGETTHYVGFQNDVTPRKE 237
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 61/92 (66%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ DP+ D P+VY ++A+ ++TGY +VVG+NCR L G D+D + +++ I E+
Sbjct: 131 ITISDPNREDNPLVYINEAYEEITGYSYEDVVGRNCRLLQGEDSDPEAIAEMRRGIGEER 190
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV ++NYRKD ++FWN + I+P+RN G+
Sbjct: 191 PVTVELVNYRKDGTAFWNEVTIAPVRNGDGET 222
>gi|219126126|ref|XP_002183315.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405071|gb|EEC45015.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 120
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 69/105 (65%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
+L S+ + SF++ DP L D P+V+ASD FLKLTGY R +V+G+NCRFL G +T
Sbjct: 7 NLVRSIQSSQHSFMITDPSLQDNPIVFASDDFLKLTGYTREQVLGRNCRFLQGTETSQEK 66
Query: 302 LYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ QI++++ + TV ++NY D + FWN L I+ +R+A ++
Sbjct: 67 VNQIRKNLSEGEDVTVTLMNYTADGTPFWNKLFIAALRDAQNNIV 111
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 55/78 (70%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SF ITDPS+ +PIVFAS FLK++G++R +++GRN R QG T++ + +IR+ + E
Sbjct: 18 SFMITDPSLQDNPIVFASDDFLKLTGYTREQVLGRNCRFLQGTETSQEKVNQIRKNLSEG 77
Query: 90 RPIEVNLLNYKKDGTPFW 107
+ V L+NY DGTPFW
Sbjct: 78 EDVTVTLMNYTADGTPFW 95
>gi|284993377|ref|YP_003411932.1| putative PAS/PAC sensor protein [Geodermatophilus obscurus DSM
43160]
gi|284066623|gb|ADB77561.1| putative PAS/PAC sensor protein [Geodermatophilus obscurus DSM
43160]
Length = 760
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 63/94 (67%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
+F + DP PD P+V+ + +F ++TGY E VG+NCRFL G TD + +I+ +++
Sbjct: 195 AFTITDPRQPDDPLVWVNPSFGRITGYSYEEAVGRNCRFLQGPATDPATVAEIRAALRAR 254
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
QA T +LN+RKD ++FWN L +SP+ + G+++
Sbjct: 255 QAITTTLLNHRKDGTAFWNQLSVSPVFDGEGELV 288
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+FTITDP P+V+ + F +++G+S E +GRN R QGP T+ T+ EIR A+R
Sbjct: 195 AFTITDPRQPDDPLVWVNPSFGRITGYSYEEAVGRNCRFLQGPATDPATVAEIRAALRAR 254
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
+ I LLN++KDGT FW +S VF E G FV VQ
Sbjct: 255 QAITTTLLNHRKDGTAFWNQLSVSPVFDGE-GELVSFVGVQ 294
>gi|334117274|ref|ZP_08491366.1| PAS/PAC sensor signal transduction histidine kinase [Microcoleus
vaginatus FGP-2]
gi|333462094|gb|EGK90699.1| PAS/PAC sensor signal transduction histidine kinase [Microcoleus
vaginatus FGP-2]
Length = 630
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 62/92 (67%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
F + D P+ P++Y + AF +TGY R E++G+N RFL+G DTD + I++++QTE
Sbjct: 219 FTIYDATDPEHPIIYCNPAFESMTGYRRQEIIGKNGRFLHGSDTDPAAVEIIRQALQTES 278
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
C V + NYRKD ++FWN ISP+R+ GK+
Sbjct: 279 ECKVILKNYRKDGTAFWNCFSISPVRDRLGKL 310
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 72/126 (57%), Gaps = 2/126 (1%)
Query: 18 LWVHE-ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNR 76
LW+++ A+ FTI D + HPI++ + F M+G+ R EIIG+NGR G T+
Sbjct: 205 LWLYDRAIAASSTGFTIYDATDPEHPIIYCNPAFESMTGYRRQEIIGKNGRFLHGSDTDP 264
Query: 77 RTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+ IR+A++ E +V L NY+KDGT FW F +S V + G+ THF+ VQ I R
Sbjct: 265 AAVEIIRQALQTESECKVILKNYRKDGTAFWNCFSISPVRDRL-GKLTHFIGVQRDITER 323
Query: 137 KHMRNS 142
K +
Sbjct: 324 KQAEEA 329
>gi|448666702|ref|ZP_21685347.1| HTR-like protein [Haloarcula amylolytica JCM 13557]
gi|445771833|gb|EMA22889.1| HTR-like protein [Haloarcula amylolytica JCM 13557]
Length = 748
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 86/162 (53%), Gaps = 6/162 (3%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P TIT P +PI +A+R FL+++G++ +E++GRN R QG T + +
Sbjct: 260 AMDEAPVGITITSPEQEDNPITYANRRFLELTGYTESEVLGRNCRFLQGEETESEPVDTM 319
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R A+ E+ P+ V L NY+KDGT FW ++ V +DG + V Q I RK +
Sbjct: 320 RAAVDEDEPVSVELRNYRKDGTMFWNQVTIAPVR-DDDGTVVNHVGFQQDITERKEHEHR 378
Query: 143 GMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSD 184
+ SE +++++ R EV + VL L+++
Sbjct: 379 LKALSE-----SVQDLLQADTREEVAEIGVETARTVLGLEAN 415
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 60/93 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ P D P+ YA+ FL+LTGY +EV+G+NCRFL G +T++ + ++ ++ ++
Sbjct: 268 ITITSPEQEDNPITYANRRFLELTGYTESEVLGRNCRFLQGEETESEPVDTMRAAVDEDE 327
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+V + NYRKD + FWN + I+P+R+ G V+
Sbjct: 328 PVSVELRNYRKDGTMFWNQVTIAPVRDDDGTVV 360
>gi|435845892|ref|YP_007308142.1| PAS domain S-box [Natronococcus occultus SP4]
gi|433672160|gb|AGB36352.1| PAS domain S-box [Natronococcus occultus SP4]
Length = 616
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 63/92 (68%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ DP D P+VY ++A+ ++TGYD +VVG+NCR L G D+D + +++ I+ E+
Sbjct: 129 ITISDPSREDNPLVYINEAYEEITGYDYEDVVGRNCRLLQGEDSDPDAVAEMRAGIEEER 188
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV I+NYRKD + FWN + I+P+RN +G++
Sbjct: 189 PVTVEIVNYRKDDTRFWNEVTIAPVRNDAGEL 220
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P TI+DPS +P+V+ + + +++G+ +++GRN R+ QG ++ + E+
Sbjct: 121 AINEAPVGITISDPSREDNPLVYINEAYEEITGYDYEDVVGRNCRLLQGEDSDPDAVAEM 180
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
R I EERP+ V ++NY+KD T FW ++ V + G TH+V Q + +RK
Sbjct: 181 RAGIEEERPVTVEIVNYRKDDTRFWNEVTIAPVR-NDAGELTHYVGFQNDVTARKE 235
>gi|398828821|ref|ZP_10587021.1| PAS domain S-box [Phyllobacterium sp. YR531]
gi|398217679|gb|EJN04196.1| PAS domain S-box [Phyllobacterium sp. YR531]
Length = 485
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDPS +PIVFA+ F +++G+SR EIIGRN R QG TN + IR+A+ PI
Sbjct: 36 ITDPSQHDNPIVFANDAFSRLTGYSREEIIGRNCRFLQGTGTNDEDVTRIRDAVARREPI 95
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
E++LLNY+KDG+ FW +S VF + G +F A Q + +H
Sbjct: 96 EIDLLNYRKDGSSFWNRVLISPVF-DDTGELKYFFASQFDVSPDRH 140
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 65/95 (68%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ DP D P+V+A+DAF +LTGY R E++G+NCRFL G T+ + +I++++
Sbjct: 31 RMPMLITDPSQHDNPIVFANDAFSRLTGYSREEIIGRNCRFLQGTGTNDEDVTRIRDAVA 90
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ + +LNYRKD SSFWN + ISP+ + +G++
Sbjct: 91 RREPIEIDLLNYRKDGSSFWNRVLISPVFDDTGEL 125
>gi|448658338|ref|ZP_21682771.1| PAS/PAC sensor signal transduction histidine kinase [Haloarcula
californiae ATCC 33799]
gi|445761732|gb|EMA12978.1| PAS/PAC sensor signal transduction histidine kinase [Haloarcula
californiae ATCC 33799]
Length = 833
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 61/92 (66%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ D + PD P+VYA+D F +LTGY VVGQN RFL G +TD + + +++E+I E+
Sbjct: 268 ITIADANQPDNPLVYANDKFSELTGYQEENVVGQNSRFLQGENTDPSPVAEMREAIDAEE 327
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV + NYRKD + FWN + I+P+ + +G V
Sbjct: 328 PVTVELQNYRKDGTEFWNRVTIAPVTDGTGAV 359
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P TI D + +P+V+A+ F +++G+ ++G+N R QG T+ + E+
Sbjct: 260 AIDEAPVGITIADANQPDNPLVYANDKFSELTGYQEENVVGQNSRFLQGENTDPSPVAEM 319
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
REAI E P+ V L NY+KDGT FW ++ V G T+++ Q + R
Sbjct: 320 REAIDAEEPVTVELQNYRKDGTEFWNRVTIAPVTDGT-GAVTNYIGFQEDMTER 372
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILN 321
PD + Y + AF + TGY+ +EVVGQ R L + ++ +I + I +
Sbjct: 398 PDGTITYVNPAFERATGYESDEVVGQTPRILKSGEMSNEYYERLWSTISSGDVWEEEIQD 457
Query: 322 YRKDKSSFWNLLHISPIRNASGKV 345
RK ++ I+P+ + +G++
Sbjct: 458 QRKSGEVYYAHQTIAPLTDDNGEI 481
>gi|152964317|ref|YP_001360101.1| PAS/PAC sensor protein [Kineococcus radiotolerans SRS30216]
gi|151358834|gb|ABS01837.1| putative PAS/PAC sensor protein [Kineococcus radiotolerans
SRS30216]
Length = 723
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
SF + DP PD P+V+ + AF ++TGY R EV+GQNCRFL G TD + +I+ +++T
Sbjct: 182 SFTISDPTKPDNPLVWTNPAFERVTGYGR-EVLGQNCRFLQGPGTDREAVARIRRALETG 240
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
T +LNYRKD ++FWN + ISP+ +A G++
Sbjct: 241 DTVTELLLNYRKDGTAFWNEVVISPVHDADGRL 273
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SFTI+DP+ +P+V+ + F +++G+ R E++G+N R QGP T+R + IR A+
Sbjct: 182 SFTISDPTKPDNPLVWTNPAFERVTGYGR-EVLGQNCRFLQGPGTDREAVARIRRALETG 240
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+ LLNY+KDGT FW +S V DGR THFV VQ + R
Sbjct: 241 DTVTELLLNYRKDGTAFWNEVVISPVH-DADGRLTHFVGVQSDVTLR 286
>gi|433420630|ref|ZP_20405566.1| HTR-like protein, partial [Haloferax sp. BAB2207]
gi|432199115|gb|ELK55325.1| HTR-like protein, partial [Haloferax sp. BAB2207]
Length = 646
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P +TDPS + +PIV+ + F ++G+SR E++GRN R QG T+ + E+
Sbjct: 263 AMDEAPIGIVLTDPSQTDNPIVYVNDEFTALTGYSRDEVLGRNCRFLQGEATDEDAVAEL 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R A+ E + LLNY+KDGT FW +++ +F +DG FV Q I RK
Sbjct: 323 RAAVDEREAVTTELLNYRKDGTEFWNRVRIAPLF-DDDGVIDFFVGFQDDITPRK 376
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 59/92 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
VL DP D P+VY +D F LTGY R+EV+G+NCRFL G TD + +++ ++ +
Sbjct: 271 IVLTDPSQTDNPIVYVNDEFTALTGYSRDEVLGRNCRFLQGEATDEDAVAELRAAVDERE 330
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
A T +LNYRKD + FWN + I+P+ + G +
Sbjct: 331 AVTTELLNYRKDGTEFWNRVRIAPLFDDDGVI 362
>gi|159044552|ref|YP_001533346.1| putative blue-light photoreceptor [Dinoroseobacter shibae DFL 12]
gi|157912312|gb|ABV93745.1| putative blue-light photoreceptor [Dinoroseobacter shibae DFL 12]
Length = 139
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 61/96 (63%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ S V DP PD PM+Y SDAFL TGY EV+G+NCRFL G DT+ + I++ ++
Sbjct: 35 EMSVVFSDPSQPDNPMIYVSDAFLVQTGYTLEEVLGRNCRFLQGPDTNPHAVEAIRQGLK 94
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
E T+ ILNYRKD S+F N L I PI + G ++
Sbjct: 95 AETRFTIDILNYRKDGSAFVNRLRIRPIYDPEGNLM 130
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 25 DELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84
DE S +DPS +P+++ S FL +G++ E++GRN R QGP TN + IR+
Sbjct: 32 DEAEMSVVFSDPSQPDNPMIYVSDAFLVQTGYTLEEVLGRNCRFLQGPDTNPHAVEAIRQ 91
Query: 85 AIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
++ E +++LNY+KDG+ F ++ ++ E G F Q P+
Sbjct: 92 GLKAETRFTIDILNYRKDGSAFVNRLRIRPIYDPE-GNLMFFAGAQNPV 139
>gi|452206149|ref|YP_007486271.1| receiver/sensor/bat box HTH-10 family transcription regulator Bat
(homolog to bacterioopsin activator) [Natronomonas
moolapensis 8.8.11]
gi|452082249|emb|CCQ35503.1| receiver/sensor/bat box HTH-10 family transcription regulator Bat
(homolog to bacterioopsin activator) [Natronomonas
moolapensis 8.8.11]
Length = 673
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 61/87 (70%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ DPH PD P++Y ++AF +LTGYD +++G+NCRFL G TD + ++++++ E+
Sbjct: 153 ITIADPHEPDEPLIYVNEAFERLTGYDTYDILGRNCRFLQGEGTDPETVDRLRQAVDNER 212
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRN 340
+ +V ILNYRK+ FWN L ++P+ +
Sbjct: 213 SISVEILNYRKNGEPFWNQLSVAPVHD 239
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 15/145 (10%)
Query: 8 IEQSFNNRYTLWVHE-------------ALDELPDSFTITDPSISGHPIVFASRGFLKMS 54
IEQ+ N + V E A+DE P TI DP P+++ + F +++
Sbjct: 117 IEQARRNHVSATVEESDPTAANLKLAELAMDEAPVGITIADPHEPDEPLIYVNEAFERLT 176
Query: 55 GFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSL 114
G+ +I+GRN R QG T+ T+ +R+A+ ER I V +LNY+K+G PFW ++
Sbjct: 177 GYDTYDILGRNCRFLQGEGTDPETVDRLRQAVDNERSISVEILNYRKNGEPFWNQLSVAP 236
Query: 115 VFGKEDGRATHFVAVQVPIVSRKHM 139
V +DG TH++ Q + RK +
Sbjct: 237 VH--DDGELTHYLGFQTDVTERKEV 259
>gi|298708956|emb|CBJ30909.1| aureochrome 4 [Ectocarpus siliculosus]
Length = 285
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 66/101 (65%), Gaps = 1/101 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+FTI+DPS+ +PIV+AS+GFL ++G++ +IGRN R QGP T+ R I IR + E
Sbjct: 149 NFTISDPSMPDNPIVYASQGFLTLTGYTIQNVIGRNCRFLQGPGTDPRAIDIIRRGVAEG 208
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
R V L+NYK DGTPFW F ++ + G+ +FV VQ
Sbjct: 209 RDTSVCLMNYKADGTPFWNQFFVA-ALRDDTGKIVNFVGVQ 248
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 64/105 (60%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
L +L +Q+F + DP +PD P+VYAS FL LTGY V+G+NCRFL G TD
Sbjct: 138 QLMQALMTSQQNFTISDPSMPDNPIVYASQGFLTLTGYTIQNVIGRNCRFLQGPGTDPRA 197
Query: 302 LYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ I+ + + +V ++NY+ D + FWN ++ +R+ +GK++
Sbjct: 198 IDIIRRGVAEGRDTSVCLMNYKADGTPFWNQFFVAALRDDTGKIV 242
>gi|448569956|ref|ZP_21639039.1| HTR-like protein [Haloferax lucentense DSM 14919]
gi|448599646|ref|ZP_21655449.1| HTR-like protein [Haloferax alexandrinus JCM 10717]
gi|445723760|gb|ELZ75397.1| HTR-like protein [Haloferax lucentense DSM 14919]
gi|445736319|gb|ELZ87863.1| HTR-like protein [Haloferax alexandrinus JCM 10717]
Length = 725
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P +TDPS + +PIV+ + F ++G+SR E++GRN R QG T+ + E+
Sbjct: 263 AMDEAPIGIVLTDPSQTDNPIVYVNDEFTALTGYSRDEVLGRNCRFLQGEATDEDAVAEL 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R A+ E + LLNY+KDGT FW +++ +F +DG FV Q I RK
Sbjct: 323 RAAVDEREAVTTELLNYRKDGTEFWNRVRIAPLF-DDDGVIDFFVGFQDDITPRK 376
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 59/92 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
VL DP D P+VY +D F LTGY R+EV+G+NCRFL G TD + +++ ++ +
Sbjct: 271 IVLTDPSQTDNPIVYVNDEFTALTGYSRDEVLGRNCRFLQGEATDEDAVAELRAAVDERE 330
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
A T +LNYRKD + FWN + I+P+ + G +
Sbjct: 331 AVTTELLNYRKDGTEFWNRVRIAPLFDDDGVI 362
>gi|407699007|ref|YP_006823794.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
'Black Sea 11']
gi|407248154|gb|AFT77339.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
'Black Sea 11']
Length = 959
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 4/160 (2%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
++S + + H A+DE S I+D G P+++ + F +++G+SR EIIG N R
Sbjct: 432 QRSLESHVKVLTH-AMDEATVSIIISDIKRVGQPVIYVNSAFEELTGYSREEIIGHNCRS 490
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QG TN+ T+ +IR+A+ PIE LLNYKKDG+ F+ ++ V K +G TH++
Sbjct: 491 MQGEETNKHTVDQIRKAVATREPIETTLLNYKKDGSTFYNRLNLTPV--KINGEVTHYIG 548
Query: 129 VQVPIVSRKHMRNSGMSYSEDGGGS-RLREIVFGSCRREV 167
Q + ++ E S RL+ S E+
Sbjct: 549 FQQDVTQQRQTEQYLQEAREKAEESARLKSSFLASMSHEI 588
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 78/149 (52%), Gaps = 22/149 (14%)
Query: 213 SVLTHYSQLTG--RLVCGKRCSLP-GMGFISSSLYISLGRIKQ----SFVLIDPHLPD-- 263
S LTH+S TG R V + SL G I +Y+ +Q S V + H D
Sbjct: 390 SELTHFSVSTGQERFVHWTKTSLADANGNIRGDIYVGSDETEQRSLESHVKVLTHAMDEA 449
Query: 264 -------------MPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
P++Y + AF +LTGY R E++G NCR + G +T+ + QI++++
Sbjct: 450 TVSIIISDIKRVGQPVIYVNSAFEELTGYSREEIIGHNCRSMQGEETNKHTVDQIRKAVA 509
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIR 339
T + +LNY+KD S+F+N L+++P++
Sbjct: 510 TREPIETTLLNYKKDGSTFYNRLNLTPVK 538
>gi|292656157|ref|YP_003536054.1| HTR-like protein [Haloferax volcanii DS2]
gi|448290154|ref|ZP_21481308.1| HTR-like protein [Haloferax volcanii DS2]
gi|291370178|gb|ADE02405.1| HTR-like protein [Haloferax volcanii DS2]
gi|445580156|gb|ELY34544.1| HTR-like protein [Haloferax volcanii DS2]
Length = 652
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P +TDPS + +PIV+ + F ++G+SR E++GRN R QG T+ + E+
Sbjct: 186 AMDEAPIGIVLTDPSQTDNPIVYVNDEFTALTGYSRDEVLGRNCRFLQGEATDEDAVAEL 245
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R A+ E + LLNY+KDGT FW +++ +F +DG FV Q I RK
Sbjct: 246 RAAVDEREAVTTELLNYRKDGTEFWNRVRIAPLF-DDDGVIDFFVGFQDDITPRK 299
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 59/92 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
VL DP D P+VY +D F LTGY R+EV+G+NCRFL G TD + +++ ++ +
Sbjct: 194 IVLTDPSQTDNPIVYVNDEFTALTGYSRDEVLGRNCRFLQGEATDEDAVAELRAAVDERE 253
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
A T +LNYRKD + FWN + I+P+ + G +
Sbjct: 254 AVTTELLNYRKDGTEFWNRVRIAPLFDDDGVI 285
>gi|302835379|ref|XP_002949251.1| hypothetical protein VOLCADRAFT_59125 [Volvox carteri f.
nagariensis]
gi|300265553|gb|EFJ49744.1| hypothetical protein VOLCADRAFT_59125 [Volvox carteri f.
nagariensis]
Length = 108
Score = 97.1 bits (240), Expect = 1e-17, Method: Composition-based stats.
Identities = 43/104 (41%), Positives = 62/104 (59%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L + TITD S HPIV+ ++ FL M+G+SR E++GRN R QG T+ + IREA+
Sbjct: 1 LREGITITDASAPDHPIVYTNKAFLSMTGYSREEVVGRNCRFLQGRDTSPAAVRTIREAL 60
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
+P+ V LLNY +DGT FW ++ V G+ ++ VQ
Sbjct: 61 ARHQPVTVQLLNYTRDGTAFWNELRLEPVVAPYSGKLLAYIGVQ 104
Score = 96.7 bits (239), Expect = 1e-17, Method: Composition-based stats.
Identities = 43/98 (43%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+++ + D PD P+VY + AFL +TGY R EVVG+NCRFL G DT + I+E++
Sbjct: 1 LREGITITDASAPDHPIVYTNKAFLSMTGYSREEVVGRNCRFLQGRDTSPAAVRTIREAL 60
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNA-SGKVL 346
Q TV++LNY +D ++FWN L + P+ SGK+L
Sbjct: 61 ARHQPVTVQLLNYTRDGTAFWNELRLEPVVAPYSGKLL 98
>gi|380474414|emb|CCF45790.1| Aureochrome1, partial [Colletotrichum higginsianum]
Length = 917
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 63/92 (68%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
F L +P L D P+V+ASD F+K+TGY R+E++ +NCRFL G TD + ++K +I +
Sbjct: 634 FCLTNPGLADNPIVFASDGFVKVTGYTRSEIIPRNCRFLQGQHTDRVPVRRLKTAISERK 693
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
ILNY+K+ FWNLL+++P+ N +GK+
Sbjct: 694 ESVELILNYKKNGDPFWNLLYVAPLYNEAGKL 725
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L D F +T+P ++ +PIVFAS GF+K++G++R+EII RN R QG T+R + ++ AI
Sbjct: 630 LGDCFCLTNPGLADNPIVFASDGFVKVTGYTRSEIIPRNCRFLQGQHTDRVPVRRLKTAI 689
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
E + +LNYKK+G PFW L ++ ++ E G+ F+ QV
Sbjct: 690 SERKESVELILNYKKNGDPFWNLLYVAPLYN-EAGKLAFFIGGQV 733
>gi|448547506|ref|ZP_21626927.1| HTR-like protein [Haloferax sp. ATCC BAA-645]
gi|445715876|gb|ELZ67628.1| HTR-like protein [Haloferax sp. ATCC BAA-645]
Length = 731
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P +TDPS + +PIV+ + F ++G+SR E++GRN R QG T+ + E+
Sbjct: 263 AMDEAPIGIVLTDPSQTDNPIVYVNDEFTTLTGYSRDEVLGRNCRFLQGEATDEDAVAEL 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R A+ E + LLNY+KDGT FW +++ +F +DG FV Q I RK
Sbjct: 323 RAAVDEREAVTTELLNYRKDGTEFWNRVRIAPLF-DDDGVIDFFVGFQDDITPRK 376
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 59/92 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
VL DP D P+VY +D F LTGY R+EV+G+NCRFL G TD + +++ ++ +
Sbjct: 271 IVLTDPSQTDNPIVYVNDEFTTLTGYSRDEVLGRNCRFLQGEATDEDAVAELRAAVDERE 330
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
A T +LNYRKD + FWN + I+P+ + G +
Sbjct: 331 AVTTELLNYRKDGTEFWNRVRIAPLFDDDGVI 362
>gi|188580069|ref|YP_001923514.1| signal transduction histidine kinase [Methylobacterium populi
BJ001]
gi|179343567|gb|ACB78979.1| signal transduction histidine kinase [Methylobacterium populi
BJ001]
Length = 488
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP +PI+F + F K++G+SR EI+GRN R QGP T+ R + IR+AI PI
Sbjct: 37 ITDPYGPDNPIIFVNHAFTKLTGYSREEILGRNCRFLQGPETDPRDVGRIRDAIERRVPI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
E+ LLN+KK+G FW +S VF E GR T+F A Q
Sbjct: 97 EIELLNHKKNGEVFWNRLLISPVFDDE-GRLTYFFASQ 133
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 66/106 (62%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S ++ + ++ DP+ PD P+++ + AF KLTGY R E++G+NCRFL G +TD
Sbjct: 21 SDPFAAAVKATRMPMLITDPYGPDNPIIFVNHAFTKLTGYSREEILGRNCRFLQGPETDP 80
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +I+++I+ + +LN++K+ FWN L ISP+ + G++
Sbjct: 81 RDVGRIRDAIERRVPIEIELLNHKKNGEVFWNRLLISPVFDDEGRL 126
>gi|448540589|ref|ZP_21623599.1| HTR-like protein [Haloferax sp. ATCC BAA-646]
gi|445709223|gb|ELZ61055.1| HTR-like protein [Haloferax sp. ATCC BAA-646]
Length = 817
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P +TDPS + +PIV+ + F ++G+SR E++GRN R QG T+ + E+
Sbjct: 315 AMDEAPIGIVLTDPSQTDNPIVYVNDEFTTLTGYSRDEVLGRNCRFLQGEATDEDAVAEL 374
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R A+ E + LLNY+KDGT FW +++ +F +DG FV Q I RK
Sbjct: 375 RAAVDEREAVTTELLNYRKDGTEFWNRVRIAPLF-DDDGVIDFFVGFQDDITPRK 428
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 59/92 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
VL DP D P+VY +D F LTGY R+EV+G+NCRFL G TD + +++ ++ +
Sbjct: 323 IVLTDPSQTDNPIVYVNDEFTTLTGYSRDEVLGRNCRFLQGEATDEDAVAELRAAVDERE 382
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
A T +LNYRKD + FWN + I+P+ + G +
Sbjct: 383 AVTTELLNYRKDGTEFWNRVRIAPLFDDDGVI 414
>gi|429856375|gb|ELA31285.1| blue light receptor [Colletotrichum gloeosporioides Nara gc5]
Length = 875
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 62/92 (67%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
F L +P + D P+V+ASD F+K+TGY R E++ +NCRFL G TD + ++K +I +
Sbjct: 567 FCLTNPSVADNPIVFASDGFVKVTGYTRPEIIPRNCRFLQGAHTDRVPIRRLKNAIDERK 626
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
ILNY+K+ FWNLL+++P+ N +GK+
Sbjct: 627 ESVELILNYKKNGDPFWNLLYVAPLYNEAGKL 658
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L D F +T+PS++ +PIVFAS GF+K++G++R EII RN R QG T+R I ++ AI
Sbjct: 563 LGDCFCLTNPSVADNPIVFASDGFVKVTGYTRPEIIPRNCRFLQGAHTDRVPIRRLKNAI 622
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
E + +LNYKK+G PFW L ++ ++ E G+ F+ Q+
Sbjct: 623 DERKESVELILNYKKNGDPFWNLLYVAPLY-NEAGKLAFFIGGQI 666
>gi|448320158|ref|ZP_21509646.1| HTR-like protein [Natronococcus amylolyticus DSM 10524]
gi|445606564|gb|ELY60468.1| HTR-like protein [Natronococcus amylolyticus DSM 10524]
Length = 634
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 70/111 (63%), Gaps = 4/111 (3%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+DE P ITDPS + +PI +A+ GF++++G++R+EI+GRN R QG RT+ +
Sbjct: 27 EQAIDEAPVGIVITDPSRADNPITYANEGFVRVTGYARSEILGRNCRFLQGERTDPEPVE 86
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDG-RATHFVAVQ 130
+R AI + V LLNY++DG PFW ++ +F DG +FV +Q
Sbjct: 87 RMRAAIDAGESVTVELLNYRRDGDPFWNRVTIAPLF---DGNEVANFVGIQ 134
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 58/85 (68%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ DP D P+ YA++ F+++TGY R+E++G+NCRFL G TD + +++ +I +
Sbjct: 37 IVITDPSRADNPITYANEGFVRVTGYARSEILGRNCRFLQGERTDPEPVERMRAAIDAGE 96
Query: 314 ACTVRILNYRKDKSSFWNLLHISPI 338
+ TV +LNYR+D FWN + I+P+
Sbjct: 97 SVTVELLNYRRDGDPFWNRVTIAPL 121
>gi|218532295|ref|YP_002423111.1| signal transduction histidine kinase [Methylobacterium extorquens
CM4]
gi|218524598|gb|ACK85183.1| signal transduction histidine kinase [Methylobacterium extorquens
CM4]
Length = 366
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 68/118 (57%), Gaps = 1/118 (0%)
Query: 229 KRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQN 288
K SLP G + V+ DP D P+V+A+ AFL LTGY R E+ GQN
Sbjct: 6 KGASLPS-GVTVEVFAAAFEASPTPMVVTDPRRGDNPVVWANGAFLGLTGYAREELYGQN 64
Query: 289 CRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
CR L G TD TVL ++ ++ T + +LNYRKD +SFWN + I+P+ + +GKVL
Sbjct: 65 CRMLQGPLTDATVLQTMRSALATGRPFEGELLNYRKDGTSFWNGMTINPVCDEAGKVL 122
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A + P +TDP +P+V+A+ FL ++G++R E+ G+N RM QGP T+ + +
Sbjct: 22 AFEASPTPMVVTDPRRGDNPVVWANGAFLGLTGYAREELYGQNCRMLQGPLTDATVLQTM 81
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
R A+ RP E LLNY+KDGT FW ++ V E G+ F + Q + + +
Sbjct: 82 RSALATGRPFEGELLNYRKDGTSFWNGMTINPVC-DEAGKVLFFFSAQADMTDKHRL 137
>gi|428313134|ref|YP_007124111.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428254746|gb|AFZ20705.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 880
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 62/101 (61%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
++ + ++ DP PD P++Y++ AF K+TGY E+ G+NCRFL G +TD+ L I
Sbjct: 252 AIASVSDGVLITDPKQPDNPIIYSNPAFSKITGYQPEEIFGRNCRFLQGAETDSEALRTI 311
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I Q +LNYRK+ SFWN L ISP+ + G +L
Sbjct: 312 RHAITQRQEVKATLLNYRKNGQSFWNELKISPVFSEQGDLL 352
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+ + D ITDP +PI++++ F K++G+ EI GRN R QG T+ + I
Sbjct: 252 AIASVSDGVLITDPKQPDNPIIYSNPAFSKITGYQPEEIFGRNCRFLQGAETDSEALRTI 311
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
R AI + + ++ LLNY+K+G FW K+S VF E G +F+ +Q I RK
Sbjct: 312 RHAITQRQEVKATLLNYRKNGQSFWNELKISPVFS-EQGDLLYFIGIQTDITERKQ 366
>gi|448584371|ref|ZP_21647245.1| HTR-like protein [Haloferax gibbonsii ATCC 33959]
gi|445728269|gb|ELZ79875.1| HTR-like protein [Haloferax gibbonsii ATCC 33959]
Length = 716
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P +TDP + +PIV+ + F ++G+S E +GRN R QG T+ + E+
Sbjct: 270 AIDEAPIGVVLTDPDQADNPIVYVNDEFTDITGYSHDEALGRNCRFLQGEETDEAAVAEL 329
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R A+ E P+ LLNY+KDGT FW +++ +F +DG FV Q I RK
Sbjct: 330 RAAVDEREPVTTELLNYRKDGTEFWNRVRIAPIF--DDGSVDLFVGFQDDITPRK 382
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 54/84 (64%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
VL DP D P+VY +D F +TGY +E +G+NCRFL G +TD + +++ ++ +
Sbjct: 279 VLTDPDQADNPIVYVNDEFTDITGYSHDEALGRNCRFLQGEETDEAAVAELRAAVDEREP 338
Query: 315 CTVRILNYRKDKSSFWNLLHISPI 338
T +LNYRKD + FWN + I+PI
Sbjct: 339 VTTELLNYRKDGTEFWNRVRIAPI 362
>gi|300863837|ref|ZP_07108762.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
gi|300338185|emb|CBN53908.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
Length = 1432
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQ-IKESIQTE 312
V+ D PD P++Y + AF K+TGY R+EV+G+NCRFL D ++ Q I+E+++ E
Sbjct: 490 IVITDNTQPDNPIIYCNAAFEKMTGYSRSEVIGRNCRFLQSTDAESEKARQKIREALRLE 549
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
Q C V + NYRKD + FWN L ISP+R++ G++
Sbjct: 550 QECHVILKNYRKDGTYFWNELAISPVRDSRGRL 582
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT-NRRTIME 81
A+ + ITD + +PI++ + F KM+G+SR+E+IGRN R Q + + +
Sbjct: 482 AISASSNGIVITDNTQPDNPIIYCNAAFEKMTGYSRSEVIGRNCRFLQSTDAESEKARQK 541
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
IREA+R E+ V L NY+KDGT FW +S V GR THFV VQ I RK
Sbjct: 542 IREALRLEQECHVILKNYRKDGTYFWNELAISPVRDSR-GRLTHFVGVQTDITDRKQAEE 600
Query: 142 S 142
+
Sbjct: 601 A 601
>gi|440740300|ref|ZP_20919790.1| histidine kinase [Pseudomonas fluorescens BRIP34879]
gi|440377195|gb|ELQ13846.1| histidine kinase [Pseudomonas fluorescens BRIP34879]
Length = 524
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 66/94 (70%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
+ ++ DP D P+++A+ AF+ LTG++++E++G+NCR L G +TD L Q +++I+
Sbjct: 35 AMIVTDPAQHDNPIIFANQAFVDLTGFEQDEIIGRNCRLLQGPETDKCALAQAQQAIERH 94
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
V +LNYRKD S+FWN + I+P+ N +G+++
Sbjct: 95 HEVCVEVLNYRKDGSTFWNEIFIAPLFNEAGQLV 128
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 84/137 (61%), Gaps = 3/137 (2%)
Query: 13 NNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72
+NR L++ A++ + +TDP+ +PI+FA++ F+ ++GF + EIIGRN R+ QGP
Sbjct: 19 SNRKDLFL-AAMEASHSAMIVTDPAQHDNPIIFANQAFVDLTGFEQDEIIGRNCRLLQGP 77
Query: 73 RTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132
T++ + + ++AI + V +LNY+KDG+ FW ++ +F E G+ +F A Q+
Sbjct: 78 ETDKCALAQAQQAIERHHEVCVEVLNYRKDGSTFWNEIFIAPLF-NEAGQLVYFFASQLD 136
Query: 133 IVSRKHMRNSGMSYSED 149
VSR+H + ++D
Sbjct: 137 -VSRRHDAEQRLRSAQD 152
>gi|410860455|ref|YP_006975689.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii AltDE1]
gi|410817717|gb|AFV84334.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii AltDE1]
Length = 959
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 82/160 (51%), Gaps = 4/160 (2%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
++S + + H A+DE S I+D G PI++ + F +++G++R EIIG N R
Sbjct: 432 QRSLESHVKVLTH-AMDEATVSIIISDIKRVGQPIIYVNSAFEELTGYTREEIIGHNCRS 490
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QG TN +TI IR+AI PIE LLNYKKDGT F+ ++ V K +G TH++
Sbjct: 491 MQGEETNEKTIDCIRKAIATREPIETTLLNYKKDGTKFFNRLNLTPV--KTNGEITHYIG 548
Query: 129 VQVPIVSRKHMRNSGMSYSEDGGGS-RLREIVFGSCRREV 167
Q + ++ E S RL+ S E+
Sbjct: 549 FQQDVTQQRQTEQYLQEAREKAEESARLKSSFLASMSHEI 588
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 55/87 (63%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
S ++ D P++Y + AF +LTGY R E++G NCR + G +T+ + I+++I T
Sbjct: 452 SIIISDIKRVGQPIIYVNSAFEELTGYTREEIIGHNCRSMQGEETNEKTIDCIRKAIATR 511
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIR 339
+ +LNY+KD + F+N L+++P++
Sbjct: 512 EPIETTLLNYKKDGTKFFNRLNLTPVK 538
>gi|448469361|ref|ZP_21600143.1| HTR-like protein [Halorubrum kocurii JCM 14978]
gi|445809404|gb|EMA59447.1| HTR-like protein [Halorubrum kocurii JCM 14978]
Length = 720
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 6/121 (4%)
Query: 231 CSLPGMGFISSSLYISLGRIKQ------SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEV 284
C+L G + S + +++ L DP D P+VYA+D F LTGY+R EV
Sbjct: 254 CTLTASGATAPSGSTAAAKLRAMDEAPIGITLADPEQEDNPIVYANDEFTALTGYERPEV 313
Query: 285 VGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGK 344
+G+NCRFL G TD + ++E+I + V + NYRKD + FWN + ++P+ +A G
Sbjct: 314 LGRNCRFLQGEGTDDEQVAALREAIDDREPVAVELRNYRKDGTEFWNRVRVAPMFDADGD 373
Query: 345 V 345
+
Sbjct: 374 L 374
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P T+ DP +PIV+A+ F ++G+ R E++GRN R QG T+ + +
Sbjct: 275 AMDEAPIGITLADPEQEDNPIVYANDEFTALTGYERPEVLGRNCRFLQGEGTDDEQVAAL 334
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
REAI + P+ V L NY+KDGT FW +++ +F DG FV Q + RK
Sbjct: 335 REAIDDREPVAVELRNYRKDGTEFWNRVRVAPMF-DADGDLDLFVGFQDDVTERK 388
>gi|428201366|ref|YP_007079955.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
[Pleurocapsa sp. PCC 7327]
gi|427978798|gb|AFY76398.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
[Pleurocapsa sp. PCC 7327]
Length = 965
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 59/90 (65%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315
+ D PD P+VY + AF K+TGY +E +G+N RFL G DT+ + QI+ ++ ++ C
Sbjct: 578 IADATQPDYPIVYCNPAFEKMTGYSHSEAIGRNYRFLQGADTEPDAVAQIRRALHEQREC 637
Query: 316 TVRILNYRKDKSSFWNLLHISPIRNASGKV 345
V + NYRKD S FWN L ISP++N G+V
Sbjct: 638 HVVLKNYRKDGSPFWNELTISPVQNEQGEV 667
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 63/107 (58%), Gaps = 1/107 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
I D + +PIV+ + F KM+G+S +E IGRN R QG T + +IR A+ E+R
Sbjct: 578 IADATQPDYPIVYCNPAFEKMTGYSHSEAIGRNYRFLQGADTEPDAVAQIRRALHEQREC 637
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
V L NY+KDG+PFW +S V E G THF+ +Q I SR+ +
Sbjct: 638 HVVLKNYRKDGSPFWNELTISPV-QNEQGEVTHFIGLQTDITSRRQI 683
>gi|383642354|ref|ZP_09954760.1| PAS/PAC sensor hybrid histidine kinase [Sphingomonas elodea ATCC
31461]
Length = 568
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 83/131 (63%), Gaps = 7/131 (5%)
Query: 216 THYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLK 275
TH+ Q R + G PG+G S+ + +L + +L DP D P+V+A+ AFL
Sbjct: 33 THHWQ---RAIIGT----PGLGDRSTVFFAALQMTRMPMILTDPRQDDNPIVFANKAFLD 85
Query: 276 LTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHI 335
LTGY+ +E++G+NCRFL G +TD + +++ +++ E+A + ++NYR+D S FWN + I
Sbjct: 86 LTGYEESEILGRNCRFLQGAETDRDAVAEMRAAVEAEEALAIEVINYRRDGSPFWNAVFI 145
Query: 336 SPIRNASGKVL 346
+P+ + G+++
Sbjct: 146 APVLDPDGELI 156
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP +PIVFA++ FL ++G+ +EI+GRN R QG T+R + E+R A+ E +
Sbjct: 66 LTDPRQDDNPIVFANKAFLDLTGYEESEILGRNCRFLQGAETDRDAVAEMRAAVEAEEAL 125
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+ ++NY++DG+PFW ++ V DG +F A Q+ + R+
Sbjct: 126 AIEVINYRRDGSPFWNAVFIAPVL-DPDGELIYFFASQLDVTRRRQ 170
>gi|367474602|ref|ZP_09474098.1| putative sensor histidine kinase with PAS/PAC and Response
regulator receiver domains [Bradyrhizobium sp. ORS 285]
gi|365273096|emb|CCD86566.1| putative sensor histidine kinase with PAS/PAC and Response
regulator receiver domains [Bradyrhizobium sp. ORS 285]
Length = 534
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 65/104 (62%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP D P+++A+ AFL++TGY E+VG NCRFL G DTD +
Sbjct: 29 FFAAVETTRMPMIVTDPRQNDNPILFANRAFLEMTGYRLAEIVGSNCRFLQGPDTDRDTI 88
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
++ +I Q V ILNYRK+ ++FWN L ISP+ N G+++
Sbjct: 89 DAVRTAIANRQDIAVEILNYRKNGAAFWNALFISPVYNRDGELV 132
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 2/116 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP + +PI+FA+R FL+M+G+ AEI+G N R QGP T+R TI +R AI + I
Sbjct: 42 VTDPRQNDNPILFANRAFLEMTGYRLAEIVGSNCRFLQGPDTDRDTIDAVRTAIANRQDI 101
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSE 148
V +LNY+K+G FW +S V+ + DG +F Q+ VSR+ S + S+
Sbjct: 102 AVEILNYRKNGAAFWNALFISPVYNR-DGELVYFFGSQLD-VSRRRDAESALVQSQ 155
>gi|94499808|ref|ZP_01306344.1| putative sensor protein [Bermanella marisrubri]
gi|94428009|gb|EAT12983.1| putative sensor protein [Oceanobacter sp. RED65]
Length = 938
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 78/132 (59%), Gaps = 5/132 (3%)
Query: 2 DSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEI 61
+SQ L++Q N + + EA+D P TI D + P+++A+R F K++G+S +E+
Sbjct: 277 NSQEQLLKQQDLN---VLLSEAIDASPVGVTIADINKPDEPLIYANRFFYKLTGYSESEV 333
Query: 62 IGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDG 121
IG+N R QG TNR + IR+AI R I + LLNYKKDGT FW +S +F +DG
Sbjct: 334 IGKNCRFLQGRNTNREARLIIRDAINTRRKIVLELLNYKKDGTEFWEKLFLSPIF--KDG 391
Query: 122 RATHFVAVQVPI 133
+V +Q I
Sbjct: 392 ECRAYVGIQQDI 403
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315
+ D + PD P++YA+ F KLTGY +EV+G+NCRFL G +T+ I+++I T +
Sbjct: 305 IADINKPDEPLIYANRFFYKLTGYSESEVIGKNCRFLQGRNTNREARLIIRDAINTRRKI 364
Query: 316 TVRILNYRKDKSSFWNLLHISPI 338
+ +LNY+KD + FW L +SPI
Sbjct: 365 VLELLNYKKDGTEFWEKLFLSPI 387
>gi|448624188|ref|ZP_21670261.1| PAS-PAC-PAC sensing histidine kinase [Haloferax denitrificans ATCC
35960]
gi|445750155|gb|EMA01594.1| PAS-PAC-PAC sensing histidine kinase [Haloferax denitrificans ATCC
35960]
Length = 858
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 107/234 (45%), Gaps = 37/234 (15%)
Query: 140 RNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALD---SDDTGLEIEDSC-- 194
RN S + G R+ V G+ RE+ +D LLD V+ + D L D C
Sbjct: 9 RNGARSARDASGEERILLAVRGARDRELLAD-LLDAYEVVVWERGREDGPPLPEFDLCIV 67
Query: 195 -------EASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPG--------MGFI 239
A+DLE RK+ A D L V+ Q R+ + +P I
Sbjct: 68 DMATYPAVAADLEARKS-DAGDRFLPVVLTVEQDEQRVAARRLSDVPDDVLAVPAPSAVI 126
Query: 240 SSSLYISLGRIKQSFVL---------------IDPHLPDMPMVYASDAFLKLTGYDRNEV 284
S + L +QS L I D P+ Y +DAF ++TGYDR E
Sbjct: 127 RSRVESLLQTRRQSLQLALYRRAMDSATVGITITEADGDQPLTYVNDAFEEMTGYDRQEA 186
Query: 285 VGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
VG+NCRFL G +TD+ + ++E+++ ++ V + NYRKD + FWN L ISP+
Sbjct: 187 VGRNCRFLQGAETDSEPVETLREAVENGESAAVSLTNYRKDGTPFWNELKISPV 240
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D TIT+ P+ + + F +M+G+ R E +GRN R QG T+ + +
Sbjct: 149 AMDSATVGITITEAD-GDQPLTYVNDAFEEMTGYDRQEAVGRNCRFLQGAETDSEPVETL 207
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
REA+ V+L NY+KDGTPFW K+S V+ +DG THFV Q R +RN
Sbjct: 208 REAVENGESAAVSLTNYRKDGTPFWNELKISPVY--DDGELTHFVGFQTDATVRHALRN 264
>gi|424875449|ref|ZP_18299111.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae WSM1455]
gi|393171150|gb|EJC71197.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae WSM1455]
Length = 375
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 64/96 (66%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ DP D P+++ + AF K+TGY +E++G+NCR L G +TD + I++S+
Sbjct: 36 RMPMIVTDPAQHDNPIIFCNAAFEKMTGYSNDELIGRNCRLLQGPETDRRTVGHIRDSVA 95
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
Q +V ILNYRKD S+FWN L ISP+R+ G+++
Sbjct: 96 RGQDISVDILNYRKDGSTFWNALFISPVRDDEGRII 131
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+F + F KM+G+S E+IGRN R+ QGP T+RRT+ IR+++ + I
Sbjct: 41 VTDPAQHDNPIIFCNAAFEKMTGYSNDELIGRNCRLLQGPETDRRTVGHIRDSVARGQDI 100
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
V++LNY+KDG+ FW +S V E GR +F A Q+ + K
Sbjct: 101 SVDILNYRKDGSTFWNALFISPVRDDE-GRIIYFFASQLDFTTVK 144
>gi|448566261|ref|ZP_21636806.1| HTR-like protein [Haloferax prahovense DSM 18310]
gi|445714206|gb|ELZ65972.1| HTR-like protein [Haloferax prahovense DSM 18310]
Length = 712
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P +TDP + +PIV+ + F ++G+SR E +GRN R QG T+ + E+
Sbjct: 270 AIDEAPIGVVLTDPDQADNPIVYVNDEFTDITGYSRDEAVGRNCRFLQGEETDEAAVAEL 329
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R A+ E P+ LLNY+KDGT FW +++ +F + G FV Q I RK
Sbjct: 330 RAAVDEREPVTTELLNYRKDGTEFWNRVRIAPIF--DGGSVDLFVGFQDDITPRK 382
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 55/84 (65%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
VL DP D P+VY +D F +TGY R+E VG+NCRFL G +TD + +++ ++ +
Sbjct: 279 VLTDPDQADNPIVYVNDEFTDITGYSRDEAVGRNCRFLQGEETDEAAVAELRAAVDEREP 338
Query: 315 CTVRILNYRKDKSSFWNLLHISPI 338
T +LNYRKD + FWN + I+PI
Sbjct: 339 VTTELLNYRKDGTEFWNRVRIAPI 362
>gi|146343422|ref|YP_001208470.1| histidine kinase [Bradyrhizobium sp. ORS 278]
gi|146196228|emb|CAL80255.1| putative sensor histidine kinase with PAS/PAC and Response
regulator receiver domains [Bradyrhizobium sp. ORS 278]
Length = 534
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 65/104 (62%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP D P+++A+ AFL++TGY E+VG NCRFL G DTD +
Sbjct: 29 FFAAVETTRMPMIVTDPRQNDNPILFANRAFLEMTGYGLTEIVGSNCRFLQGPDTDRDTI 88
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
++ +I Q V +LNYRK+ ++FWN L ISP+ N +G ++
Sbjct: 89 DAVRTAIANRQDIAVEVLNYRKNGAAFWNALFISPVYNRNGDLV 132
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP + +PI+FA+R FL+M+G+ EI+G N R QGP T+R TI +R AI + I
Sbjct: 42 VTDPRQNDNPILFANRAFLEMTGYGLTEIVGSNCRFLQGPDTDRDTIDAVRTAIANRQDI 101
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSE 148
V +LNY+K+G FW +S V+ + +G +F Q+ VSR+ S + S+
Sbjct: 102 AVEVLNYRKNGAAFWNALFISPVYNR-NGDLVYFFGSQLD-VSRRRDAESALVQSQ 155
>gi|332140272|ref|YP_004426010.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
'Deep ecotype']
gi|327550294|gb|AEA97012.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
'Deep ecotype']
Length = 959
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 82/160 (51%), Gaps = 4/160 (2%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
++S + + H A+DE S I+D G PI++A+ F +++G++R EIIG N R
Sbjct: 432 QRSLESHVKVLTH-AMDEATVSIIISDIKRVGQPIIYANSAFEELTGYTREEIIGHNCRS 490
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QG T +TI IR+AI PIE LLNYKKDGT F+ ++ V K +G TH++
Sbjct: 491 MQGEETKEKTIDCIRKAIATREPIETTLLNYKKDGTKFFNRLNLTPV--KTNGEITHYIG 548
Query: 129 VQVPIVSRKHMRNSGMSYSEDGGGS-RLREIVFGSCRREV 167
Q + ++ E S RL+ S E+
Sbjct: 549 FQQDVTQQRQTEQYLQEAREKAEESARLKSSFLASMSHEI 588
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 55/87 (63%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
S ++ D P++YA+ AF +LTGY R E++G NCR + G +T + I+++I T
Sbjct: 452 SIIISDIKRVGQPIIYANSAFEELTGYTREEIIGHNCRSMQGEETKEKTIDCIRKAIATR 511
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIR 339
+ +LNY+KD + F+N L+++P++
Sbjct: 512 EPIETTLLNYKKDGTKFFNRLNLTPVK 538
>gi|407682658|ref|YP_006797832.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
'English Channel 673']
gi|407244269|gb|AFT73455.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
'English Channel 673']
Length = 958
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 84/160 (52%), Gaps = 4/160 (2%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
++S + + H A+DE S I+D G PI++ + F +++G+SR EIIG N R
Sbjct: 431 QRSLESHVKVLTH-AMDEATVSIIISDIKRVGQPIIYVNSAFEELTGYSREEIIGHNCRS 489
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QG T+++T+ +IR+AI PIE LLNYKKDG+ F+ ++ V K +G TH++
Sbjct: 490 MQGDETSKQTVDQIRKAIAVREPIETTLLNYKKDGSAFYNRLNLTPV--KINGEVTHYIG 547
Query: 129 VQVPIVSRKHMRNSGMSYSEDGGGS-RLREIVFGSCRREV 167
Q + ++ E S RL+ S E+
Sbjct: 548 FQQDVTQQRQTEQYLQDAREKAEESARLKSSFLASMSHEI 587
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 22/147 (14%)
Query: 215 LTHYSQLTG--RLVCGKRCSLP-GMGFISSSLYISLGRIKQ----SFVLIDPHLPD---- 263
LTH+S TG R V + SL G I +Y+ +Q S V + H D
Sbjct: 391 LTHFSVSTGQERFVHWTKTSLADANGNIRGDIYVGSDETEQRSLESHVKVLTHAMDEATV 450
Query: 264 -----------MPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
P++Y + AF +LTGY R E++G NCR + G +T + QI+++I
Sbjct: 451 SIIISDIKRVGQPIIYVNSAFEELTGYSREEIIGHNCRSMQGDETSKQTVDQIRKAIAVR 510
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIR 339
+ +LNY+KD S+F+N L+++P++
Sbjct: 511 EPIETTLLNYKKDGSAFYNRLNLTPVK 537
>gi|406595687|ref|YP_006746817.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii ATCC
27126]
gi|406373008|gb|AFS36263.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii ATCC
27126]
Length = 958
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 84/160 (52%), Gaps = 4/160 (2%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
++S + + H A+DE S I+D G PI++ + F +++G+SR EIIG N R
Sbjct: 431 QRSLESHVKVLTH-AMDEATVSIIISDIKRVGQPIIYVNSAFEELTGYSREEIIGHNCRS 489
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QG T+++T+ +IR+AI PIE LLNYKKDG+ F+ ++ V K +G TH++
Sbjct: 490 MQGDETSKQTVDQIRKAIAVREPIETTLLNYKKDGSAFYNRLNLTPV--KINGEVTHYIG 547
Query: 129 VQVPIVSRKHMRNSGMSYSEDGGGS-RLREIVFGSCRREV 167
Q + ++ E S RL+ S E+
Sbjct: 548 FQQDVTQQRQTEQYLQDAREKAEESARLKSSFLASMSHEI 587
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 22/147 (14%)
Query: 215 LTHYSQLTG--RLVCGKRCSLP-GMGFISSSLYISLGRIKQ----SFVLIDPHLPD---- 263
LTH+S TG R V + SL G I +Y+ +Q S V + H D
Sbjct: 391 LTHFSVSTGQERFVHWTKTSLADANGNIRGDIYVGSDETEQRSLESHVKVLTHAMDEATV 450
Query: 264 -----------MPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
P++Y + AF +LTGY R E++G NCR + G +T + QI+++I
Sbjct: 451 SIIISDIKRVGQPIIYVNSAFEELTGYSREEIIGHNCRSMQGDETSKQTVDQIRKAIAVR 510
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIR 339
+ +LNY+KD S+F+N L+++P++
Sbjct: 511 EPIETTLLNYKKDGSAFYNRLNLTPVK 537
>gi|428316459|ref|YP_007114341.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Oscillatoria nigro-viridis PCC 7112]
gi|428240139|gb|AFZ05925.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Oscillatoria nigro-viridis PCC 7112]
Length = 1003
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 71/116 (61%), Gaps = 4/116 (3%)
Query: 17 TLWVHE-ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTN 75
LW+ + AL I D + PI++ + F +M+G+ +EI+GRN R QGP T+
Sbjct: 27 ALWLRDRALAATSCGIVIADANAPDCPIIYCNPAFERMTGYCASEILGRNCRFLQGPDTD 86
Query: 76 RRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQ 130
R T+ +IREA+R+ R I+ + NY+KDGTPFW K+SL ++D THFV VQ
Sbjct: 87 RTTVAKIREALRQGRAIQTPIKNYRKDGTPFWT--KLSLSPVRDDKANLTHFVGVQ 140
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 60/87 (68%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ D + PD P++Y + AF ++TGY +E++G+NCRFL G DTD T + +I+E+++ +
Sbjct: 42 IVIADANAPDCPIIYCNPAFERMTGYCASEILGRNCRFLQGPDTDRTTVAKIREALRQGR 101
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRN 340
A I NYRKD + FW L +SP+R+
Sbjct: 102 AIQTPIKNYRKDGTPFWTKLSLSPVRD 128
>gi|429191743|ref|YP_007177421.1| PAS domain-containing protein [Natronobacterium gregoryi SP2]
gi|448325113|ref|ZP_21514511.1| PAS/PAC sensor protein [Natronobacterium gregoryi SP2]
gi|429135961|gb|AFZ72972.1| PAS domain S-box [Natronobacterium gregoryi SP2]
gi|445616252|gb|ELY69880.1| PAS/PAC sensor protein [Natronobacterium gregoryi SP2]
Length = 1517
Score = 95.9 bits (237), Expect = 3e-17, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 62/91 (68%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315
+ DP PD P+VYA+DAF ++TGY +E G+NCRFL G +TD+ + +++E+I +
Sbjct: 313 ITDPRHPDDPIVYANDAFEEMTGYAESECRGRNCRFLQGRETDSEAVRELREAIAAAEPT 372
Query: 316 TVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
TV + NYRKD S FWN + ++PI + G V+
Sbjct: 373 TVELRNYRKDGSEFWNRVSVAPIEDDQGAVV 403
Score = 83.2 bits (204), Expect = 2e-13, Method: Composition-based stats.
Identities = 43/114 (37%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ P TITDP PIV+A+ F +M+G++ +E GRN R QG T+ + E+R
Sbjct: 304 LEAAPIGITITDPRHPDDPIVYANDAFEEMTGYAESECRGRNCRFLQGRETDSEAVRELR 363
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
EAI P V L NY+KDG+ FW ++ + + G +FV Q + RK
Sbjct: 364 EAIAAAEPTTVELRNYRKDGSEFWNRVSVAPI-EDDQGAVVNFVEFQEDVTERK 416
>gi|448456461|ref|ZP_21595230.1| bacterio-opsin activator [Halorubrum lipolyticum DSM 21995]
gi|445811937|gb|EMA61934.1| bacterio-opsin activator [Halorubrum lipolyticum DSM 21995]
Length = 667
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V A+ E P +I+DP +S +P+V+A+ +++ +G+ E +GRN R QGP T+ T+
Sbjct: 142 VKRAVAEAPVGISISDPDLSDYPLVYANEAWIEHTGYPIEEALGRNPRFLQGPGTDPETV 201
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
I EA+ E I V + NY++DGTPFW ++ V+ DG H+V Q + RK+
Sbjct: 202 ERIAEAVAENEEITVEIRNYRRDGTPFWNELTVAPVYDG-DGDLAHYVGFQNDVTDRKN 259
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 98/182 (53%), Gaps = 5/182 (2%)
Query: 166 EVCSDSLLDLDRVLALDSDDTGLEIEDSCE--ASDLEKRKAATAIDNILSVLTHYSQLTG 223
E +D+ L++ VL +DD G + E A+++ +R +I+ ++S ++ ++ T
Sbjct: 66 EAVADADLEVPVVL-FTADDDGARAAGALERGAAEVRRRNGTGSIERLVSDVS--ARCTE 122
Query: 224 RLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNE 283
G R + G ++ + ++ + DP L D P+VYA++A+++ TGY E
Sbjct: 123 GPPPGARQDISGREPSATEVKRAVAEAPVGISISDPDLSDYPLVYANEAWIEHTGYPIEE 182
Query: 284 VVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+G+N RFL G TD + +I E++ + TV I NYR+D + FWN L ++P+ + G
Sbjct: 183 ALGRNPRFLQGPGTDPETVERIAEAVAENEEITVEIRNYRRDGTPFWNELTVAPVYDGDG 242
Query: 344 KV 345
+
Sbjct: 243 DL 244
>gi|219127781|ref|XP_002184107.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404338|gb|EEC44285.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 108
Score = 95.9 bits (237), Expect = 3e-17, Method: Composition-based stats.
Identities = 43/91 (47%), Positives = 60/91 (65%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+Q FVL DP LPD P+V+AS F KLTGY EV+G+NCRFL G TD + I++++
Sbjct: 3 QQCFVLSDPKLPDNPIVFASPGFYKLTGYTSREVLGRNCRFLQGPGTDAKAVDVIRKAVG 62
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNA 341
T TV +LNY+ D + FWN I+ +R++
Sbjct: 63 TGSDATVCLLNYKADGTPFWNQFFIAALRDS 93
Score = 87.4 bits (215), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/80 (47%), Positives = 53/80 (66%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
F ++DP + +PIVFAS GF K++G++ E++GRN R QGP T+ + + IR+A+
Sbjct: 6 FVLSDPKLPDNPIVFASPGFYKLTGYTSREVLGRNCRFLQGPGTDAKAVDVIRKAVGTGS 65
Query: 91 PIEVNLLNYKKDGTPFWMLF 110
V LLNYK DGTPFW F
Sbjct: 66 DATVCLLNYKADGTPFWNQF 85
>gi|350551714|ref|ZP_08920927.1| PAS/PAC sensor hybrid histidine kinase [Thiorhodospira sibirica
ATCC 700588]
gi|349796852|gb|EGZ50635.1| PAS/PAC sensor hybrid histidine kinase [Thiorhodospira sibirica
ATCC 700588]
Length = 1042
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 63/100 (63%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L I S + D P+MP+VY + AF +LTGY R E++G+NCRFL DT+ T L +
Sbjct: 145 ALNAIPDSIAIADASDPEMPLVYINQAFEQLTGYRREEILGKNCRFLQADDTEQTALDVL 204
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
++++ + + NYRKD + FWN L I+P+RN +G +
Sbjct: 205 RQALHEGKPSKTLLRNYRKDGTPFWNQLSITPVRNETGTI 244
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL+ +PDS I D S P+V+ ++ F +++G+ R EI+G+N R Q T + + +
Sbjct: 145 ALNAIPDSIAIADASDPEMPLVYINQAFEQLTGYRREEILGKNCRFLQADDTEQTALDVL 204
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
R+A+ E +P + L NY+KDGTPFW ++ V E G THFV +Q
Sbjct: 205 RQALHEGKPSKTLLRNYRKDGTPFWNQLSITPV-RNETGTITHFVGIQ 251
>gi|159471175|ref|XP_001693732.1| predicted protein [Chlamydomonas reinhardtii]
gi|158283235|gb|EDP08986.1| predicted protein [Chlamydomonas reinhardtii]
Length = 115
Score = 95.5 bits (236), Expect = 3e-17, Method: Composition-based stats.
Identities = 43/98 (43%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+++ + DP LPD P+VY + AFL +TGY R EV+G+NCRFL G DTD + I+E++
Sbjct: 1 VREGITISDPSLPDNPIVYTNQAFLAMTGYSREEVLGRNCRFLQGPDTDPGSVAAIREAL 60
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRN-ASGKVL 346
+ TVR++NY K F N L ++P+R SG+V+
Sbjct: 61 SQRRGATVRLVNYTKQGCRFVNELRLAPVREPGSGRVI 98
Score = 85.1 bits (209), Expect = 5e-14, Method: Composition-based stats.
Identities = 41/102 (40%), Positives = 61/102 (59%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+ TI+DPS+ +PIV+ ++ FL M+G+SR E++GRN R QGP T+ ++ IREA+ +
Sbjct: 3 EGITISDPSLPDNPIVYTNQAFLAMTGYSREEVLGRNCRFLQGPDTDPGSVAAIREALSQ 62
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
R V L+NY K G F +++ V GR V VQ
Sbjct: 63 RRGATVRLVNYTKQGCRFVNELRLAPVREPGSGRVIAIVGVQ 104
>gi|448745950|ref|ZP_21727620.1| Diguanylate phosphodiesterase, EAL domain [Halomonas titanicae BH1]
gi|445566678|gb|ELY22784.1| Diguanylate phosphodiesterase, EAL domain [Halomonas titanicae BH1]
Length = 685
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 62/91 (68%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
+++D D+P+VY + AF ++TGY RN+ +G+NCRFL G +TD + Q++ I ++
Sbjct: 138 LIVDAQSSDLPLVYVNAAFERITGYSRNQALGRNCRFLQGEETDPATVKQLQVGITEQRE 197
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
V I NYR D + FWN LHISP+R+ +G+V
Sbjct: 198 VHVVIRNYRHDGTVFWNDLHISPVRDENGQV 228
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
I D S P+V+ + F +++G+SR + +GRN R QG T+ T+ +++ I E+R +
Sbjct: 139 IVDAQSSDLPLVYVNAAFERITGYSRNQALGRNCRFLQGEETDPATVKQLQVGITEQREV 198
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
V + NY+ DGT FW +S V E+G+ THFV VQ
Sbjct: 199 HVVIRNYRHDGTVFWNDLHISPV-RDENGQVTHFVGVQ 235
>gi|448443537|ref|ZP_21589577.1| HTR-like protein [Halorubrum saccharovorum DSM 1137]
gi|445686745|gb|ELZ39053.1| HTR-like protein [Halorubrum saccharovorum DSM 1137]
Length = 717
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 74/126 (58%), Gaps = 5/126 (3%)
Query: 223 GRLVCGKRCSLPGMGFISSSLYISLGRIKQSFV---LIDPHLPDMPMVYASDAFLKLTGY 279
G L+C S +S+L + I ++ V L DPH D P++YA+D F LTGY
Sbjct: 248 GSLIC--TLSPQAADAAASNLSVKEQAIDEAPVGILLTDPHQDDNPIIYANDEFTDLTGY 305
Query: 280 DRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIR 339
++ E+VG+NCRFL G T+ + +++ +I + TV + NYRKD + FWN + ++P+
Sbjct: 306 EKREIVGRNCRFLQGEATEDEPVQRLRTAIDNREPVTVELRNYRKDGTEFWNRVRVAPLF 365
Query: 340 NASGKV 345
+ G+V
Sbjct: 366 DDDGEV 371
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+DE P +TDP +PI++A+ F ++G+ + EI+GRN R QG T +
Sbjct: 270 EQAIDEAPVGILLTDPHQDDNPIIYANDEFTDLTGYEKREIVGRNCRFLQGEATEDEPVQ 329
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+R AI P+ V L NY+KDGT FW +++ +F +DG FV Q + RK
Sbjct: 330 RLRTAIDNREPVTVELRNYRKDGTEFWNRVRVAPLF-DDDGEVDLFVGFQDDVTDRK 385
>gi|240138254|ref|YP_002962726.1| sensory transduction histidine kinase [Methylobacterium extorquens
AM1]
gi|240008223|gb|ACS39449.1| sensory transduction histidine kinase [Methylobacterium extorquens
AM1]
Length = 492
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 89/168 (52%), Gaps = 10/168 (5%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PIVFA+ F K++G++R EI+GRN R QGP T+ + IR+AI PI
Sbjct: 37 VTDPNRPDNPIVFANAAFTKLTGYTRDEILGRNCRFLQGPETDPYDVARIRDAIERRVPI 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ--VPIVSRKHMRNSG-MSYSED 149
E+ LLN+KKDG FW +S VF + DG T+F A Q V + K +R G ++ ED
Sbjct: 97 EIELLNHKKDGEVFWNRLLVSPVFDR-DGALTYFFASQFDVTLERNKLVRLQGELAALED 155
Query: 150 GGGSRLREIVFGSCRREVCSDSLLDLDRV--LALDSDDTGLEIEDSCE 195
R E+ R L R+ LD D LE D C+
Sbjct: 156 EVARRKAELARTDDRMRFA----LKAGRIGSWTLDLADRRLEASDICK 199
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 64/95 (67%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ DP+ PD P+V+A+ AF KLTGY R+E++G+NCRFL G +TD + +I+++I+
Sbjct: 32 RMPMLVTDPNRPDNPIVFANAAFTKLTGYTRDEILGRNCRFLQGPETDPYDVARIRDAIE 91
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +LN++KD FWN L +SP+ + G +
Sbjct: 92 RRVPIEIELLNHKKDGEVFWNRLLVSPVFDRDGAL 126
>gi|448607023|ref|ZP_21659280.1| PAS-PAC-PAC sensing histidine kinase [Haloferax sulfurifontis ATCC
BAA-897]
gi|445738451|gb|ELZ89971.1| PAS-PAC-PAC sensing histidine kinase [Haloferax sulfurifontis ATCC
BAA-897]
Length = 858
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 110/240 (45%), Gaps = 37/240 (15%)
Query: 134 VSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALD---SDDTGLEI 190
V+ RN S + G R+ V G+ RE+ +D LLD V+ + D L
Sbjct: 3 VNEDASRNGARSARDASGEERILLAVRGARDRELLAD-LLDAYEVVVWERGREDGPPLPE 61
Query: 191 EDSC---------EASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPG------ 235
D C +DLE RK+ A D + V+ Q R+ + +P
Sbjct: 62 FDLCIVDMATYPAVTADLEARKS-DAGDRFVPVVLTVEQDEQRVAARRLSDVPDDVLAVP 120
Query: 236 --MGFISSSLYISLGRIKQSFVL---------------IDPHLPDMPMVYASDAFLKLTG 278
I S + L +QS L I D P+ Y +DAF ++TG
Sbjct: 121 APSAVIRSRVESLLQTRRQSLQLALYRRAMDGATVGITITEADGDQPLTYVNDAFEEMTG 180
Query: 279 YDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
YDR E +G+NCRFL G +TD+ + ++E++++ ++ TV + NYRKD + FWN L ISP+
Sbjct: 181 YDRQEAIGRNCRFLQGAETDSEPVETLREAVESGESATVSLTNYRKDGTPFWNELKISPV 240
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D TIT+ P+ + + F +M+G+ R E IGRN R QG T+ + +
Sbjct: 149 AMDGATVGITITEAD-GDQPLTYVNDAFEEMTGYDRQEAIGRNCRFLQGAETDSEPVETL 207
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
REA+ V+L NY+KDGTPFW K+S V+ +DG THFV Q R +RN
Sbjct: 208 REAVESGESATVSLTNYRKDGTPFWNELKISPVY--DDGELTHFVGFQTDATVRHALRN 264
>gi|448435239|ref|ZP_21586716.1| bacterio-opsin activator [Halorubrum tebenquichense DSM 14210]
gi|445684063|gb|ELZ36449.1| bacterio-opsin activator [Halorubrum tebenquichense DSM 14210]
Length = 667
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 71/118 (60%), Gaps = 1/118 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V A+++ P +I+DP + +P+V+ + + + +G+S E++GRN R QGP T+ T+
Sbjct: 142 VTRAVEDAPIGISISDPDLPDYPLVYVNDAWREHTGYSVEEVLGRNPRFLQGPGTDPETV 201
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
EI EAI E + V + NY++DGTPFW ++ V+ E+G H+V Q + RK
Sbjct: 202 EEIAEAIGNEEEVTVEIRNYRRDGTPFWNELTVAPVY-DEEGELAHYVGFQNDVSERK 258
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 58/88 (65%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTV 317
DP LPD P+VY +DA+ + TGY EV+G+N RFL G TD + +I E+I E+ TV
Sbjct: 157 DPDLPDYPLVYVNDAWREHTGYSVEEVLGRNPRFLQGPGTDPETVEEIAEAIGNEEEVTV 216
Query: 318 RILNYRKDKSSFWNLLHISPIRNASGKV 345
I NYR+D + FWN L ++P+ + G++
Sbjct: 217 EIRNYRRDGTPFWNELTVAPVYDEEGEL 244
>gi|448587044|ref|ZP_21648796.1| PAS sensor protein [Haloferax gibbonsii ATCC 33959]
gi|445724264|gb|ELZ75898.1| PAS sensor protein [Haloferax gibbonsii ATCC 33959]
Length = 732
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE TIT PS PIV+A+ F ++G+ E++G N R+ QGP T
Sbjct: 392 AIDEASVGITITGPSEDDCPIVYANGAFEDLTGYDAEEVLGENHRVLQGPDTAEEDCERF 451
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
REAI +E P V LLNY++DGTPFW +++ V G +DG T+++ Q + R
Sbjct: 452 REAIADEEPCSVELLNYRRDGTPFWNQSEITPVHG-DDGSVTNYIGFQREVTERN 505
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 53/87 (60%)
Query: 259 PHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVR 318
P D P+VYA+ AF LTGYD EV+G+N R L G DT + +E+I E+ C+V
Sbjct: 405 PSEDDCPIVYANGAFEDLTGYDAEEVLGENHRVLQGPDTAEEDCERFREAIADEEPCSVE 464
Query: 319 ILNYRKDKSSFWNLLHISPIRNASGKV 345
+LNYR+D + FWN I+P+ G V
Sbjct: 465 LLNYRRDGTPFWNQSEITPVHGDDGSV 491
>gi|448653703|ref|ZP_21681301.1| HTR-like protein [Haloarcula californiae ATCC 33799]
gi|445767291|gb|EMA18398.1| HTR-like protein [Haloarcula californiae ATCC 33799]
Length = 837
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 61/92 (66%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ D + PD P+VYA+D F +LTGY +VGQN RFL G +TD + +++E+I E+
Sbjct: 272 ITIADANRPDNPLVYANDKFSELTGYQEENIVGQNSRFLQGENTDPGPVAEMREAIDAEE 331
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV + NYRKD + FWN + I+P+ + +G+V
Sbjct: 332 PVTVELQNYRKDGTEFWNRVTIAPVTDGTGEV 363
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P TI D + +P+V+A+ F +++G+ I+G+N R QG T+ + E+
Sbjct: 264 AIDEAPVGITIADANRPDNPLVYANDKFSELTGYQEENIVGQNSRFLQGENTDPGPVAEM 323
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
REAI E P+ V L NY+KDGT FW ++ V G T+++ Q
Sbjct: 324 REAIDAEEPVTVELQNYRKDGTEFWNRVTIAPVTDGT-GEVTNYIGFQ 370
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILN 321
PD + Y + AF ++TGY+ E VGQ R L + ++ +I + I +
Sbjct: 402 PDGIITYVNPAFERVTGYESEEAVGQTPRILKSGEMSDEYYERLWSTISSGDVWEEEIQD 461
Query: 322 YRKDKSSFWNLLHISPIRNASGKV 345
RK ++ I+P+ + +G++
Sbjct: 462 KRKSGEVYYAHQTIAPLTDDNGEI 485
>gi|342888059|gb|EGU87476.1| hypothetical protein FOXB_02061 [Fusarium oxysporum Fo5176]
Length = 670
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 62/96 (64%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+K SF L DP P+V+ASD F +LTGY R+EV+ NCRFL G TD + +++ +I
Sbjct: 290 LKGSFCLSDPSRSGNPIVFASDEFEELTGYSRSEVLAHNCRFLQGPQTDRDGIAKMRSAI 349
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ CT +LN+RKD + FWNLL + P+ + +GK
Sbjct: 350 WRNEECTELLLNFRKDGTPFWNLLFLCPLLDTAGKT 385
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 74/114 (64%), Gaps = 5/114 (4%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L SF ++DPS SG+PIVFAS F +++G+SR+E++ N R QGP+T+R I ++R AI
Sbjct: 290 LKGSFCLSDPSRSGNPIVFASDEFEELTGYSRSEVLAHNCRFLQGPQTDRDGIAKMRSAI 349
Query: 87 -REERPIEVNLLNYKKDGTPFW-MLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
R E E+ LLN++KDGTPFW +LF L+ G+ F+ Q+ + S H
Sbjct: 350 WRNEECTEL-LLNFRKDGTPFWNLLFLCPLL--DTAGKTKFFMGAQIDVSSSLH 400
>gi|428316777|ref|YP_007114659.1| PAS/PAC sensor signal transduction histidine kinase [Oscillatoria
nigro-viridis PCC 7112]
gi|428240457|gb|AFZ06243.1| PAS/PAC sensor signal transduction histidine kinase [Oscillatoria
nigro-viridis PCC 7112]
Length = 1102
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 61/93 (65%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
S ++ D PD P++Y + AF KLTGY EV+G+NCRFL G DTD L +++ S+++
Sbjct: 21 SILIADARQPDTPIIYCNPAFEKLTGYSAEEVIGRNCRFLQGPDTDRAELDKLRSSLRSG 80
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
V + NYRKDK+ FWN L +SPI + GK+
Sbjct: 81 TEIQVVLKNYRKDKTPFWNELMVSPILDNEGKL 113
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+S I D PI++ + F K++G+S E+IGRN R QGP T+R + ++R ++R
Sbjct: 20 NSILIADARQPDTPIIYCNPAFEKLTGYSAEEVIGRNCRFLQGPDTDRAELDKLRSSLRS 79
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
I+V L NY+KD TPFW +S + E G+ THF+ VQ I R
Sbjct: 80 GTEIQVVLKNYRKDKTPFWNELMVSPILDNE-GKLTHFIGVQNDISKR 126
>gi|389867117|ref|YP_006369358.1| PAS/PAC light sensor protein [Modestobacter marinus]
gi|388489321|emb|CCH90899.1| putative PAS/PAC light sensor protein [Modestobacter marinus]
Length = 776
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+FTITDP P+V+ + F ++SG+S E +GRN R QGP T + ++R A+RE+
Sbjct: 217 AFTITDPRQEDDPLVWVNPSFTRISGYSYEESVGRNCRFLQGPATEDAAVDDLRRALREQ 276
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
+PI LLNY+KDGT FW ++ VF G FV VQ + R + +
Sbjct: 277 QPITTTLLNYRKDGTAFWNQLSITPVF-DGGGELVSFVGVQTDVTERVRVED 327
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 61/94 (64%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
+F + DP D P+V+ + +F +++GY E VG+NCRFL G T+ + ++ +++ +
Sbjct: 217 AFTITDPRQEDDPLVWVNPSFTRISGYSYEESVGRNCRFLQGPATEDAAVDDLRRALREQ 276
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
Q T +LNYRKD ++FWN L I+P+ + G+++
Sbjct: 277 QPITTTLLNYRKDGTAFWNQLSITPVFDGGGELV 310
>gi|433638189|ref|YP_007283949.1| PAS domain S-box [Halovivax ruber XH-70]
gi|433289993|gb|AGB15816.1| PAS domain S-box [Halovivax ruber XH-70]
Length = 674
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 71/130 (54%), Gaps = 3/130 (2%)
Query: 10 QSFNNRYTLWVHE-ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
+ ++R V E A+DE P ITDP +P+V+ + F ++G+ +E IGRN R
Sbjct: 141 EQLDDREERRVKERAMDEAPVGIAITDPDRPDNPLVYVNDSFEALTGYGPSETIGRNCRF 200
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QGP T+ + ++R AI P+ V L NY+ DG FW +++ V E G+ THFV
Sbjct: 201 LQGPETDPDAVAKLRAAIDAAEPVAVELQNYRADGEVFWNRVEIAPV--TEHGQVTHFVG 258
Query: 129 VQVPIVSRKH 138
Q + +RK
Sbjct: 259 YQTDVTARKE 268
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ DP PD P+VY +D+F LTGY +E +G+NCRFL G +TD + +++ +I +
Sbjct: 163 IAITDPDRPDNPLVYVNDSFEALTGYGPSETIGRNCRFLQGPETDPDAVAKLRAAIDAAE 222
Query: 314 ACTVRILNYRKDKSSFWNLLHISPI 338
V + NYR D FWN + I+P+
Sbjct: 223 PVAVELQNYRADGEVFWNRVEIAPV 247
>gi|334116631|ref|ZP_08490723.1| PAS/PAC sensor signal transduction histidine kinase [Microcoleus
vaginatus FGP-2]
gi|333461451|gb|EGK90056.1| PAS/PAC sensor signal transduction histidine kinase [Microcoleus
vaginatus FGP-2]
Length = 1102
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 61/93 (65%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
S ++ D PD+P++Y + AF KLTGY EV+G+NCRFL G DTD L +++ S++
Sbjct: 21 SILIADASRPDIPIIYCNPAFEKLTGYSAEEVIGRNCRFLQGPDTDQAELDKLRSSLRAG 80
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
V + NYRKDK+ FWN L +SPI + GK+
Sbjct: 81 TEIQVVLKNYRKDKTPFWNELIVSPILDNEGKL 113
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 75/131 (57%), Gaps = 6/131 (4%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+S I D S PI++ + F K++G+S E+IGRN R QGP T++ + ++R ++R
Sbjct: 20 NSILIADASRPDIPIIYCNPAFEKLTGYSAEEVIGRNCRFLQGPDTDQAELDKLRSSLRA 79
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSE 148
I+V L NY+KD TPFW +S + E G+ THF+ VQ I S++ + + SE
Sbjct: 80 GTEIQVVLKNYRKDKTPFWNELIVSPILDNE-GKLTHFIGVQNDI-SKRVAAETALQESE 137
Query: 149 DGGGSRLREIV 159
+ RLR I
Sbjct: 138 E----RLRAIA 144
>gi|219850592|ref|YP_002465025.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
9485]
gi|219544851|gb|ACL26589.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
9485]
Length = 913
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 72/124 (58%), Gaps = 5/124 (4%)
Query: 13 NNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72
NR+ L A++E+ +TD + PIVF +R F ++G++ E++GRN R QGP
Sbjct: 36 QNRFLL---AAVNEMASGMIVTDAG-ADQPIVFVNRAFSTITGYAPNEVLGRNCRFLQGP 91
Query: 73 RTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132
+T+ T+ +REAI RPI+ +LNY+KDG PFW +S V E G FV VQ
Sbjct: 92 QTDAATVARLREAIAAARPIQERILNYRKDGQPFWNQLSISPV-RDETGNVVAFVGVQTD 150
Query: 133 IVSR 136
+ ++
Sbjct: 151 VTAQ 154
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 56/84 (66%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322
D P+V+ + AF +TGY NEV+G+NCRFL G TD + +++E+I + RILNY
Sbjct: 59 DQPIVFVNRAFSTITGYAPNEVLGRNCRFLQGPQTDAATVARLREAIAAARPIQERILNY 118
Query: 323 RKDKSSFWNLLHISPIRNASGKVL 346
RKD FWN L ISP+R+ +G V+
Sbjct: 119 RKDGQPFWNQLSISPVRDETGNVV 142
>gi|389643238|ref|XP_003719251.1| hypothetical protein MGG_08735 [Magnaporthe oryzae 70-15]
gi|351639020|gb|EHA46884.1| hypothetical protein MGG_08735 [Magnaporthe oryzae 70-15]
Length = 961
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 70/105 (66%), Gaps = 1/105 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L DSFT+TDP ++ +PI+FAS GF ++G ++II +N R+ QG +T+++ + IR A+
Sbjct: 612 LGDSFTMTDPRLADNPIIFASDGFASLTGHPLSDIISKNCRVLQGKQTDKQAVARIRAAV 671
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
REE + +LNYKK+G PFW L ++ +F E G+ F+ QV
Sbjct: 672 REETEVVELVLNYKKNGDPFWNLLYIAPLF-DEQGQLAFFIGGQV 715
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 63/102 (61%), Gaps = 3/102 (2%)
Query: 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLY 303
Y LG SF + DP L D P+++ASD F LTG+ ++++ +NCR L G TD +
Sbjct: 609 YQGLG---DSFTMTDPRLADNPIIFASDGFASLTGHPLSDIISKNCRVLQGKQTDKQAVA 665
Query: 304 QIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+ +++ E +LNY+K+ FWNLL+I+P+ + G++
Sbjct: 666 RIRAAVREETEVVELVLNYKKNGDPFWNLLYIAPLFDEQGQL 707
>gi|440462673|gb|ELQ32674.1| hypothetical protein OOU_Y34scaffold01075g30 [Magnaporthe oryzae
Y34]
gi|440489849|gb|ELQ69462.1| hypothetical protein OOW_P131scaffold00152g12 [Magnaporthe oryzae
P131]
Length = 961
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 70/105 (66%), Gaps = 1/105 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L DSFT+TDP ++ +PI+FAS GF ++G ++II +N R+ QG +T+++ + IR A+
Sbjct: 612 LGDSFTMTDPRLADNPIIFASDGFASLTGHPLSDIISKNCRVLQGKQTDKQAVARIRAAV 671
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
REE + +LNYKK+G PFW L ++ +F E G+ F+ QV
Sbjct: 672 REETEVVELVLNYKKNGDPFWNLLYIAPLF-DEQGQLAFFIGGQV 715
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 63/102 (61%), Gaps = 3/102 (2%)
Query: 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLY 303
Y LG SF + DP L D P+++ASD F LTG+ ++++ +NCR L G TD +
Sbjct: 609 YQGLG---DSFTMTDPRLADNPIIFASDGFASLTGHPLSDIISKNCRVLQGKQTDKQAVA 665
Query: 304 QIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+ +++ E +LNY+K+ FWNLL+I+P+ + G++
Sbjct: 666 RIRAAVREETEVVELVLNYKKNGDPFWNLLYIAPLFDEQGQL 707
>gi|323448448|gb|EGB04346.1| hypothetical protein AURANDRAFT_32655 [Aureococcus anophagefferens]
Length = 140
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 65/106 (61%), Gaps = 3/106 (2%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SF ITDPS+ +PIV+AS FL +G+ E+IG+N R QGP T T+ E+ + I E
Sbjct: 10 SFCITDPSLKDNPIVYASASFLSTTGYPLDEVIGKNCRFLQGPGTFPGTVAELAKGIAEG 69
Query: 90 RPIEVNLLNYKKDGTPFW-MLFKMSLVFGKEDGRATHFVAVQVPIV 134
V +LNYKKDGTPFW LF SL + R ++V VQ+P+
Sbjct: 70 TDTTVTILNYKKDGTPFWNQLFVASLR--DINKRVVNYVGVQIPVA 113
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 64/101 (63%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L ++SF + DP L D P+VYAS +FL TGY +EV+G+NCRFL G T + ++
Sbjct: 3 TLQSAQRSFCITDPSLKDNPIVYASASFLSTTGYPLDEVIGKNCRFLQGPGTFPGTVAEL 62
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ I TV ILNY+KD + FWN L ++ +R+ + +V+
Sbjct: 63 AKGIAEGTDTTVTILNYKKDGTPFWNQLFVASLRDINKRVV 103
>gi|418059569|ref|ZP_12697514.1| signal transduction histidine kinase [Methylobacterium extorquens
DSM 13060]
gi|373566905|gb|EHP92889.1| signal transduction histidine kinase [Methylobacterium extorquens
DSM 13060]
Length = 366
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 67/118 (56%), Gaps = 1/118 (0%)
Query: 229 KRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQN 288
K SLP G + V+ DP D P+V+A+ AFL LTGY R E+ GQN
Sbjct: 6 KGASLPS-GVTVEVFAAAFEASPTPMVVTDPRRGDNPVVWANGAFLGLTGYAREELYGQN 64
Query: 289 CRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
CR L G TD VL ++ ++ T + +LNYRKD +SFWN + I+P+ + +GKVL
Sbjct: 65 CRMLQGPLTDAAVLQTMRSALATGRPFEGELLNYRKDGTSFWNGMTINPVCDEAGKVL 122
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A + P +TDP +P+V+A+ FL ++G++R E+ G+N RM QGP T+ + +
Sbjct: 22 AFEASPTPMVVTDPRRGDNPVVWANGAFLGLTGYAREELYGQNCRMLQGPLTDAAVLQTM 81
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
R A+ RP E LLNY+KDGT FW ++ V E G+ F + Q + + +
Sbjct: 82 RSALATGRPFEGELLNYRKDGTSFWNGMTINPVC-DEAGKVLFFFSAQADMTDKHRL 137
>gi|336253112|ref|YP_004596219.1| PAS/PAC sensor protein [Halopiger xanaduensis SH-6]
gi|335337101|gb|AEH36340.1| putative PAS/PAC sensor protein [Halopiger xanaduensis SH-6]
Length = 658
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 62/92 (67%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ DP D P+VY ++A+ ++TGY +EVVG+NCRFL G D++ + ++ +I ++
Sbjct: 146 ITISDPDREDNPLVYVNEAYQEITGYSYDEVVGRNCRFLQGGDSNPDAIAEMAAAIDEDR 205
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV + NYRKD + FWN + I+P+RN +G+V
Sbjct: 206 PVTVELENYRKDGTEFWNEVTIAPVRNDAGEV 237
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL+E P TI+DP +P+V+ + + +++G+S E++GRN R QG +N I E+
Sbjct: 138 ALEEAPVGITISDPDREDNPLVYVNEAYQEITGYSYDEVVGRNCRFLQGGDSNPDAIAEM 197
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
AI E+RP+ V L NY+KDGT FW ++ V + G T++V Q + +RK +
Sbjct: 198 AAAIDEDRPVTVELENYRKDGTEFWNEVTIAPVR-NDAGEVTNYVGFQNDVTARKEAERA 256
>gi|315498235|ref|YP_004087039.1| pas/pac sensor hybrid histidine kinase [Asticcacaulis excentricus
CB 48]
gi|315416247|gb|ADU12888.1| PAS/PAC sensor hybrid histidine kinase [Asticcacaulis excentricus
CB 48]
Length = 596
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 64/104 (61%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
+ ++ + ++ DP+ PD P+V+A+ AFL TGY EV+G+NCRFL G TD ++
Sbjct: 104 FFAAIEMTRMPMIVTDPNRPDNPIVFANQAFLNTTGYTMEEVMGRNCRFLQGEGTDPQMI 163
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+ V I N+RKD ++FWN L +SPI + GK+L
Sbjct: 164 ANLSRAIRDRTDIAVEIQNFRKDGTAFWNALFVSPIFDRDGKLL 207
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PIVFA++ FL +G++ E++GRN R QG T+ + I + AIR+ I
Sbjct: 117 VTDPNRPDNPIVFANQAFLNTTGYTMEEVMGRNCRFLQGEGTDPQMIANLSRAIRDRTDI 176
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
V + N++KDGT FW +S +F + DG+ ++ Q+ + R+
Sbjct: 177 AVEIQNFRKDGTAFWNALFVSPIFDR-DGKLLYYFGSQLDVTRRR 220
>gi|399911282|ref|ZP_10779596.1| sensory box/FOG: EAL domain/GGDEF domain containing protein
[Halomonas sp. KM-1]
Length = 743
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 60/85 (70%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ D LPD P+VYA+++F + TGY +EV+G+NCR+L+G +TD L ++ ++Q
Sbjct: 191 IMIADALLPDTPLVYANESFYRTTGYTPDEVLGRNCRYLHGEETDPQALDALRSALQRHT 250
Query: 314 ACTVRILNYRKDKSSFWNLLHISPI 338
V +LNYRKDKS+FWN L ISPI
Sbjct: 251 EIEVTLLNYRKDKSTFWNHLSISPI 275
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ ++ P+ I D + P+V+A+ F + +G++ E++GRN R G T+ + +
Sbjct: 180 LQRGVEATPNGIMIADALLPDTPLVYANESFYRTTGYTPDEVLGRNCRYLHGEETDPQAL 239
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+R A++ IEV LLNY+KD + FW +S + E R THF+ +Q I +
Sbjct: 240 DALRSALQRHTEIEVTLLNYRKDKSTFWNHLSISPIL-DEHERCTHFIGIQQDITKYR 296
>gi|163853435|ref|YP_001641478.1| PAS sensor protein [Methylobacterium extorquens PA1]
gi|163665040|gb|ABY32407.1| PAS sensor protein [Methylobacterium extorquens PA1]
Length = 366
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 67/118 (56%), Gaps = 1/118 (0%)
Query: 229 KRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQN 288
K SLP G + V+ DP D P+V+A+ AFL LTGY R E+ GQN
Sbjct: 6 KGASLPS-GVTVEVFAAAFEASPTPMVVTDPRRGDNPVVWANGAFLGLTGYAREELYGQN 64
Query: 289 CRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
CR L G TD VL ++ ++ T + +LNYRKD +SFWN + I+P+ + +GKVL
Sbjct: 65 CRMLQGPLTDAAVLQTMRAALATGRPFEGELLNYRKDGTSFWNGMTINPVCDEAGKVL 122
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A + P +TDP +P+V+A+ FL ++G++R E+ G+N RM QGP T+ + +
Sbjct: 22 AFEASPTPMVVTDPRRGDNPVVWANGAFLGLTGYAREELYGQNCRMLQGPLTDAAVLQTM 81
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
R A+ RP E LLNY+KDGT FW ++ V E G+ F + Q + + +
Sbjct: 82 RAALATGRPFEGELLNYRKDGTSFWNGMTINPVC-DEAGKVLFFFSAQADMTDKHRL 137
>gi|110679404|ref|YP_682411.1| sensory box histidine kinase [Roseobacter denitrificans OCh 114]
gi|109455520|gb|ABG31725.1| sensory box histidine kinase, putative [Roseobacter denitrificans
OCh 114]
Length = 350
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 66/96 (68%)
Query: 249 RIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKES 308
R + + V+ +P+L D P+VYA++AF++ TGY + +VG+NCRFL G DTD + ++ +
Sbjct: 29 RSQVAMVMTNPNLDDNPIVYANEAFVRTTGYSHSAIVGRNCRFLQGEDTDKAAVDVLRHA 88
Query: 309 IQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGK 344
I+ +Q TV ILNY+ + + F N L +SPI +A G+
Sbjct: 89 IELDQNVTVDILNYKANGAPFMNRLIVSPIMDAQGR 124
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 67/112 (59%), Gaps = 7/112 (6%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ +T+P++ +PIV+A+ F++ +G+S + I+GRN R QG T++ + +R AI +
Sbjct: 33 AMVMTNPNLDDNPIVYANEAFVRTTGYSHSAIVGRNCRFLQGEDTDKAAVDVLRHAIELD 92
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
+ + V++LNYK +G PF +S + + GR +F+ +Q K +RN
Sbjct: 93 QNVTVDILNYKANGAPFMNRLIVSPIMDAQ-GRTEYFIGIQ------KELRN 137
>gi|129560442|dbj|BAF48777.1| LOV-domain containing protein [Marchantia polymorpha]
Length = 718
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 73/114 (64%), Gaps = 3/114 (2%)
Query: 233 LPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFL 292
+PG +S ++ +L + +FV+ D P+ P++YAS F +TGY EVVG+NCRFL
Sbjct: 272 IPG---VSRNVKEALTSFQLAFVVCDALNPEYPVLYASAGFFSMTGYTAKEVVGRNCRFL 328
Query: 293 NGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
G TD + I++++ ++ + ++LNY+KD FWNLL ISPI++ G+++
Sbjct: 329 QGQYTDAKDIEMIRDALVNRKSFSGKLLNYKKDGIPFWNLLTISPIKDEEGRII 382
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V EAL +F + D +P+++AS GF M+G++ E++GRN R QG T+ + I
Sbjct: 279 VKEALTSFQLAFVVCDALNPEYPVLYASAGFFSMTGYTAKEVVGRNCRFLQGQYTDAKDI 338
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
IR+A+ + LLNYKKDG PFW L +S + E+GR ++ +Q +
Sbjct: 339 EMIRDALVNRKSFSGKLLNYKKDGIPFWNLLTISPI-KDEEGRIIKYIGMQAEVT 392
>gi|291566707|dbj|BAI88979.1| two-component response regulator [Arthrospira platensis NIES-39]
Length = 501
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 65/106 (61%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S L ++ + V+ DP+ PD P++Y + F +LTGY +E++G NCRFL G + D
Sbjct: 165 SKLLEKAIAATQNGVVITDPNQPDNPIIYVNFGFERLTGYPAHEILGSNCRFLQGNERDQ 224
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
L I+++I + C V + NYR+D + FWN L ISP+RN G++
Sbjct: 225 PALDDIRQAIAEAEECRVILKNYRRDGTMFWNELFISPVRNEQGEL 270
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 1/135 (0%)
Query: 3 SQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEII 62
SQ+ L ++ + + +A+ + ITDP+ +PI++ + GF +++G+ EI+
Sbjct: 151 SQIYLHDRQVAEATSKLLEKAIAATQNGVVITDPNQPDNPIIYVNFGFERLTGYPAHEIL 210
Query: 63 GRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGR 122
G N R QG ++ + +IR+AI E V L NY++DGT FW +S V E G
Sbjct: 211 GSNCRFLQGNERDQPALDDIRQAIAEAEECRVILKNYRRDGTMFWNELFISPV-RNEQGE 269
Query: 123 ATHFVAVQVPIVSRK 137
T+F+ +Q + RK
Sbjct: 270 LTNFIGIQTDVTERK 284
>gi|448688370|ref|ZP_21694203.1| HTR-like protein [Haloarcula japonica DSM 6131]
gi|445779431|gb|EMA30361.1| HTR-like protein [Haloarcula japonica DSM 6131]
Length = 748
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 114/244 (46%), Gaps = 23/244 (9%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ A+DE P TIT P +PI +A+R FL+++G++ +E++GRN R QG T +
Sbjct: 257 IKRAMDEAPIGITITSPEQDENPISYANRQFLELTGYTESEVLGRNCRFLQGEETKSEPV 316
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+R AI + P+ V L NY+KDGT FW ++ V +DG ++V Q I K
Sbjct: 317 DVMRAAIDADEPVSVELRNYRKDGTMFWNQVSIAPVR-DDDGAVVNYVGFQQDITEWKEH 375
Query: 140 RNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDL 199
+ SE + +++ R EV + VL L+++ ED+ L
Sbjct: 376 ERRLKALSE-----SVHDLIRADTREEVAEIGVETARTVLGLEANTIHFYDEDN---RTL 427
Query: 200 EKRKAATAIDNILSVLTHYS---QLTGRLV-CGKRCSLPGM----------GFISSSLYI 245
E A+ AI +++ L ++ + R+ CG ++ + I S LY+
Sbjct: 428 EPVAASDAIYDLVDDLPTFTPGDSIAWRVYECGDALAVDDVHADPDIYNPDTLIKSELYL 487
Query: 246 SLGR 249
LG
Sbjct: 488 PLGE 491
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 65/107 (60%), Gaps = 7/107 (6%)
Query: 247 LGRIKQSF-------VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
L RIK++ + P + P+ YA+ FL+LTGY +EV+G+NCRFL G +T +
Sbjct: 254 LSRIKRAMDEAPIGITITSPEQDENPISYANRQFLELTGYTESEVLGRNCRFLQGEETKS 313
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ ++ +I ++ +V + NYRKD + FWN + I+P+R+ G V+
Sbjct: 314 EPVDVMRAAIDADEPVSVELRNYRKDGTMFWNQVSIAPVRDDDGAVV 360
>gi|448530974|ref|ZP_21620808.1| bacterio-opsin activator [Halorubrum hochstenium ATCC 700873]
gi|445707414|gb|ELZ59268.1| bacterio-opsin activator [Halorubrum hochstenium ATCC 700873]
Length = 667
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 71/118 (60%), Gaps = 1/118 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V A+++ P +I+DP + +P+V+ + + + +G+S E++GRN R QGP T+ T+
Sbjct: 142 VTRAVEDAPIGISISDPDLPDYPLVYVNDAWREHTGYSVEEVLGRNPRFLQGPGTDPETV 201
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
EI EAI E + V + NY++DGTPFW ++ V+ E+G H+V Q + RK
Sbjct: 202 EEIAEAIGNEEEVTVEIRNYRRDGTPFWNELTVAPVY-DEEGDLAHYVGFQNDVSERK 258
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 78/143 (54%), Gaps = 2/143 (1%)
Query: 201 KRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPH 260
K+ A +ID ++S ++ S +G R + ++ + ++ + DP
Sbjct: 102 KKNGAASIDRLVSDVSAVS--SGVPASEPRQDVSDHEPTAAEVTRAVEDAPIGISISDPD 159
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320
LPD P+VY +DA+ + TGY EV+G+N RFL G TD + +I E+I E+ TV I
Sbjct: 160 LPDYPLVYVNDAWREHTGYSVEEVLGRNPRFLQGPGTDPETVEEIAEAIGNEEEVTVEIR 219
Query: 321 NYRKDKSSFWNLLHISPIRNASG 343
NYR+D + FWN L ++P+ + G
Sbjct: 220 NYRRDGTPFWNELTVAPVYDEEG 242
>gi|428311734|ref|YP_007122711.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428253346|gb|AFZ19305.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 483
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 59/91 (64%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
V+ D LP MP++Y + AF ++TGY EV+G NCRFL G +T + Q++ +I+ +
Sbjct: 160 VIADTRLPGMPLIYVNPAFEQITGYSAAEVLGYNCRFLQGKETSQPAVAQLRAAIKAGEH 219
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
C V +LNYRKD + FWN L ISPI + K+
Sbjct: 220 CAVTLLNYRKDGTPFWNELTISPIYDEDKKL 250
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 32 TITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91
I D + G P+++ + F +++G+S AE++G N R QG T++ + ++R AI+
Sbjct: 160 VIADTRLPGMPLIYVNPAFEQITGYSAAEVLGYNCRFLQGKETSQPAVAQLRAAIKAGEH 219
Query: 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
V LLNY+KDGTPFW +S ++ ED + THFV +Q I R
Sbjct: 220 CAVTLLNYRKDGTPFWNELTISPIY-DEDKKLTHFVGIQSDISDR 263
>gi|339502812|ref|YP_004690232.1| ATP-binding sensor protein [Roseobacter litoralis Och 149]
gi|338756805|gb|AEI93269.1| putative ATP-binding sensor protein [Roseobacter litoralis Och 149]
Length = 350
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 66/96 (68%)
Query: 249 RIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKES 308
R + + VL +P+L D P+VYA++AF++ TGY + +VG+NCRFL G DTD + ++ +
Sbjct: 29 RSQVAMVLTNPNLDDNPIVYANEAFVRTTGYAHSAIVGRNCRFLQGEDTDKAAVDVLRHA 88
Query: 309 IQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGK 344
I+ +Q TV ILNY+ + + F N L +SPI ++ GK
Sbjct: 89 IELDQNVTVDILNYKANGAPFMNRLVVSPIVDSQGK 124
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 67/112 (59%), Gaps = 7/112 (6%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ +T+P++ +PIV+A+ F++ +G++ + I+GRN R QG T++ + +R AI +
Sbjct: 33 AMVLTNPNLDDNPIVYANEAFVRTTGYAHSAIVGRNCRFLQGEDTDKAAVDVLRHAIELD 92
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
+ + V++LNYK +G PF +S + + G+ +F+ +Q K +RN
Sbjct: 93 QNVTVDILNYKANGAPFMNRLVVSPIVDSQ-GKTEYFIGIQ------KELRN 137
>gi|416407631|ref|ZP_11688282.1| PAS containing protein [Crocosphaera watsonii WH 0003]
gi|357260847|gb|EHJ10190.1| PAS containing protein [Crocosphaera watsonii WH 0003]
Length = 483
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 63/107 (58%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S LY ++ S V+ D D P++Y + F +TGY EV G+NCRFL G D
Sbjct: 163 SHLLYQAIAATNNSIVITDATASDYPIIYVNPGFEIMTGYSLQEVTGKNCRFLQGSDDQQ 222
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
L QI++ +Q ++C V + NYRKD S FWN + +SPI++ SG +L
Sbjct: 223 PELEQIRDCLQKGESCHVTLRNYRKDGSLFWNEMSLSPIKDESGNIL 269
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 68/128 (53%), Gaps = 1/128 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+++A+ +S ITD + S +PI++ + GF M+G+S E+ G+N R QG + +
Sbjct: 166 LYQAIAATNNSIVITDATASDYPIIYVNPGFEIMTGYSLQEVTGKNCRFLQGSDDQQPEL 225
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+IR+ +++ V L NY+KDG+ FW +S + E G +++ VQ + +K
Sbjct: 226 EQIRDCLQKGESCHVTLRNYRKDGSLFWNEMSLSPI-KDESGNILYYLGVQTDVTDKKKA 284
Query: 140 RNSGMSYS 147
+ Y
Sbjct: 285 NETQQRYK 292
>gi|395492431|ref|ZP_10424010.1| multi-sensor hybrid histidine kinase [Sphingomonas sp. PAMC 26617]
Length = 849
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 62/93 (66%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ +P LPD P+V+ ++AF +LTGY R E++G+NCRFL G DTD + +++ + +
Sbjct: 30 RMPMIITNPRLPDNPIVFTNNAFCRLTGYTREEILGRNCRFLQGADTDPATVARLRAACE 89
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+ + ILNYRK+ +FWN L ++P+ + G
Sbjct: 90 RVEPLEIDILNYRKNGDTFWNRLLMAPVYDTEG 122
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +PIVF + F +++G++R EI+GRN R QG T+ T+ +R A P+
Sbjct: 35 ITNPRLPDNPIVFTNNAFCRLTGYTREEILGRNCRFLQGADTDPATVARLRAACERVEPL 94
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
E+++LNY+K+G FW M+ V+ E G ++ A QV +
Sbjct: 95 EIDILNYRKNGDTFWNRLLMAPVYDTE-GVLAYYFASQVDV 134
>gi|240140855|ref|YP_002965335.1| histidine kinase, domains HK, ATPase and sensory PAS
[Methylobacterium extorquens AM1]
gi|240010832|gb|ACS42058.1| putative histidine kinase, domains HK, ATPase and sensory PAS
[Methylobacterium extorquens AM1]
Length = 351
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 61/93 (65%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ DP D P+V+A+ AFL LTGY R E+ GQNCR L G TD VL ++ ++ T +
Sbjct: 15 MVVTDPRRGDNPVVWANGAFLGLTGYAREELYGQNCRMLQGPLTDAAVLQTMRSALATGR 74
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+LNYRKD +SFWN + I+P+ + +GKVL
Sbjct: 75 PFEGELLNYRKDGTSFWNGMTINPVCDEAGKVL 107
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A + P +TDP +P+V+A+ FL ++G++R E+ G+N RM QGP T+ + +
Sbjct: 7 AFEASPTPMVVTDPRRGDNPVVWANGAFLGLTGYAREELYGQNCRMLQGPLTDAAVLQTM 66
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
R A+ RP E LLNY+KDGT FW ++ V E G+ F + Q + + +
Sbjct: 67 RSALATGRPFEGELLNYRKDGTSFWNGMTINPVC-DEAGKVLFFFSAQADMTDKHRL 122
>gi|188583311|ref|YP_001926756.1| multi-sensor hybrid histidine kinase [Methylobacterium populi
BJ001]
gi|418057848|ref|ZP_12695833.1| multi-sensor hybrid histidine kinase [Methylobacterium extorquens
DSM 13060]
gi|179346809|gb|ACB82221.1| multi-sensor hybrid histidine kinase [Methylobacterium populi
BJ001]
gi|373568664|gb|EHP94608.1| multi-sensor hybrid histidine kinase [Methylobacterium extorquens
DSM 13060]
Length = 888
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 63/95 (66%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ V+ +P PD P+V+ +DAF +LTGY R E++G+NCRFL G +TD + I+E+I
Sbjct: 46 RMPMVITNPRRPDNPIVFVNDAFCRLTGYAREEILGRNCRFLQGPETDPETVRLIREAIV 105
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
++ + I N++KD + FWN L ++P+ +A G +
Sbjct: 106 APRSIEIDIRNHKKDGTPFWNRLLLAPVNDAGGDL 140
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 67/110 (60%), Gaps = 2/110 (1%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
IT+P +PIVF + F +++G++R EI+GRN R QGP T+ T+ IREAI R
Sbjct: 49 MVITNPRRPDNPIVFVNDAFCRLTGYAREEILGRNCRFLQGPETDPETVRLIREAIVAPR 108
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI-VSRKHM 139
IE+++ N+KKDGTPFW ++ V G +F A Q+ + V R+ +
Sbjct: 109 SIEIDIRNHKKDGTPFWNRLLLAPV-NDAGGDLAYFFASQLDVTVERERL 157
>gi|452077702|gb|AGF93651.1| signal-transducing histidine kinase [uncultured organism]
Length = 732
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 66/116 (56%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P TITDP +P+++ + GF ++G+S+ E +GRN R QG T R + E+
Sbjct: 266 AMDEAPVGITITDPDREDNPMIYVNEGFEALTGYSKEEAVGRNCRFLQGEATRERPVAEM 325
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
R AI P+ V L NY+KDG+ FW ++ V + G T++V Q I RK
Sbjct: 326 RRAIDRAEPVSVALRNYRKDGSQFWDRVSIAPVRDRA-GTVTNYVGFQEDITERKE 380
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 56/92 (60%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ DP D PM+Y ++ F LTGY + E VG+NCRFL G T + +++ +I +
Sbjct: 274 ITITDPDREDNPMIYVNEGFEALTGYSKEEAVGRNCRFLQGEATRERPVAEMRRAIDRAE 333
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+V + NYRKD S FW+ + I+P+R+ +G V
Sbjct: 334 PVSVALRNYRKDGSQFWDRVSIAPVRDRAGTV 365
>gi|254563364|ref|YP_003070459.1| histidine kinase [Methylobacterium extorquens DM4]
gi|254270642|emb|CAX26646.1| putative histidine kinase, domains HK, ATPase and sensory PAS
[Methylobacterium extorquens DM4]
Length = 351
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 61/93 (65%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ DP D P+V+A+ AFL LTGY R E+ GQNCR L G TD VL ++ ++ T +
Sbjct: 15 MVVTDPRRGDNPVVWANGAFLGLTGYAREELYGQNCRMLQGPLTDAAVLQTMRAALATGR 74
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+LNYRKD +SFWN + I+P+ + +GKVL
Sbjct: 75 PFEGELLNYRKDGTSFWNGMTINPVCDEAGKVL 107
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A + P +TDP +P+V+A+ FL ++G++R E+ G+N RM QGP T+ + +
Sbjct: 7 AFEASPTPMVVTDPRRGDNPVVWANGAFLGLTGYAREELYGQNCRMLQGPLTDAAVLQTM 66
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
R A+ RP E LLNY+KDGT FW ++ V E G+ F + Q + + +
Sbjct: 67 RAALATGRPFEGELLNYRKDGTSFWNGMTINPVC-DEAGKVLFFFSAQADMTDKHRL 122
>gi|434403453|ref|YP_007146338.1| PAS domain S-box [Cylindrospermum stagnale PCC 7417]
gi|428257708|gb|AFZ23658.1| PAS domain S-box [Cylindrospermum stagnale PCC 7417]
Length = 2260
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 61/95 (64%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ V+ D +PD P++Y + AF ++TGY EV+GQNCR L G D L ++ ++Q
Sbjct: 1767 RHGIVITDVTIPDKPLIYVNSAFERMTGYTAAEVIGQNCRLLQGADISQPELTYLRAAVQ 1826
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ + CTV + NYRKD S FWN L+ISP+ + G++
Sbjct: 1827 SGKDCTVILRNYRKDGSLFWNELNISPVYDTDGEL 1861
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 5/124 (4%)
Query: 29 DSFTITDPSISGHP----IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84
D+ IT+ I P I++ + F +MSG++ E++G+ R+ QG +T+R + +IR
Sbjct: 161 DAIIITEAVIPEEPFGLRILYVNAAFTRMSGYAVGEVMGKTPRILQGEQTSRTQLAKIRA 220
Query: 85 AIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGM 144
A++ PI L+NY K+G+ +W+ + + + G+ THFVAVQ I +RK +
Sbjct: 221 ALQAGLPIRTELINYHKNGSTYWVEINV-VPIKDQQGKITHFVAVQRDITARKQTEEALR 279
Query: 145 SYSE 148
S E
Sbjct: 280 SSEE 283
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITD +I P+++ + F +M+G++ AE+IG+N R+ QG ++ + +R A++ +
Sbjct: 1772 ITDVTIPDKPLIYVNSAFERMTGYTAAEVIGQNCRLLQGADISQPELTYLRAAVQSGKDC 1831
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
V L NY+KDG+ FW +S V+ DG TH++ +Q I RK +
Sbjct: 1832 TVILRNYRKDGSLFWNELNISPVYDT-DGELTHYIGIQTDITERKQAETA 1880
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 253 SFVLIDPHLPDMP----MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKES 308
+ ++ + +P+ P ++Y + AF +++GY EV+G+ R L G T T L +I+ +
Sbjct: 162 AIIITEAVIPEEPFGLRILYVNAAFTRMSGYAVGEVMGKTPRILQGEQTSRTQLAKIRAA 221
Query: 309 IQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+Q ++NY K+ S++W +++ PI++ GK+
Sbjct: 222 LQAGLPIRTELINYHKNGSTYWVEINVVPIKDQQGKI 258
>gi|374852440|dbj|BAL55373.1| signal transduction protein [uncultured gamma proteobacterium]
Length = 747
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITD +PI++A+ FL+++G+S E++G+N R QGP T+ I EIR A++E R
Sbjct: 393 ITDALKPDNPIIYANPAFLRITGYSLEELLGKNPRFLQGPETDSEAIAEIRAALKEGRDC 452
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
+ L NY+KDGTPFW +S V E+G+ THFV VQ +
Sbjct: 453 HLTLKNYRKDGTPFWNELLISPV-RDENGKLTHFVGVQTDVTE 494
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 64/91 (70%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
++ D PD P++YA+ AFL++TGY E++G+N RFL G +TD+ + +I+ +++ +
Sbjct: 392 LITDALKPDNPIIYANPAFLRITGYSLEELLGKNPRFLQGPETDSEAIAEIRAALKEGRD 451
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
C + + NYRKD + FWN L ISP+R+ +GK+
Sbjct: 452 CHLTLKNYRKDGTPFWNELLISPVRDENGKL 482
>gi|163850308|ref|YP_001638351.1| PAS sensor protein [Methylobacterium extorquens PA1]
gi|163661913|gb|ABY29280.1| PAS sensor protein [Methylobacterium extorquens PA1]
Length = 488
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP +PIVF + F K++G+SR EI+GRN R QGP T+ R + IR+A+ P+
Sbjct: 37 ITDPHRPDNPIVFVNGAFSKLTGYSREEILGRNCRFLQGPETDPRDVARIRDAVERRVPV 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
E++LLN+KK G FW +S VF E G+ T+F A Q +
Sbjct: 97 EIDLLNHKKSGEVFWNRLLISPVFDDE-GQLTYFFASQFDVT 137
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 62/95 (65%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ DPH PD P+V+ + AF KLTGY R E++G+NCRFL G +TD + +I+++++
Sbjct: 32 RMPMLITDPHRPDNPIVFVNGAFSKLTGYSREEILGRNCRFLQGPETDPRDVARIRDAVE 91
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +LN++K FWN L ISP+ + G++
Sbjct: 92 RRVPVEIDLLNHKKSGEVFWNRLLISPVFDDEGQL 126
>gi|240137379|ref|YP_002961850.1| sensory transduction histidine kinase of the HWE family
[Methylobacterium extorquens AM1]
gi|418059067|ref|ZP_12697026.1| signal transduction histidine kinase [Methylobacterium extorquens
DSM 13060]
gi|240007347|gb|ACS38573.1| putative sensory transduction histidine kinase of the HWE family
[Methylobacterium extorquens AM1]
gi|373567409|gb|EHP93379.1| signal transduction histidine kinase [Methylobacterium extorquens
DSM 13060]
Length = 488
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP +PIVF + F K++G+SR EI+GRN R QGP T+ R + IR+A+ P+
Sbjct: 37 ITDPHRPDNPIVFVNGAFSKLTGYSREEILGRNCRFLQGPETDPRDVARIRDAVERRVPV 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
E++LLN+KK G FW +S VF E G+ T+F A Q +
Sbjct: 97 EIDLLNHKKSGEVFWNRLLISPVFDDE-GQLTYFFASQFDVT 137
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 62/95 (65%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ DPH PD P+V+ + AF KLTGY R E++G+NCRFL G +TD + +I+++++
Sbjct: 32 RMPMLITDPHRPDNPIVFVNGAFSKLTGYSREEILGRNCRFLQGPETDPRDVARIRDAVE 91
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +LN++K FWN L ISP+ + G++
Sbjct: 92 RRVPVEIDLLNHKKSGEVFWNRLLISPVFDDEGQL 126
>gi|388583576|gb|EIM23877.1| hypothetical protein WALSEDRAFT_66770 [Wallemia sebi CBS 633.66]
Length = 753
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 69/117 (58%), Gaps = 5/117 (4%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L DSF +T+P + HPIV +S GF K++GF R IIGRN R QGP T + IR+A+
Sbjct: 386 LGDSFVLTNPRLRDHPIVMSSLGFTKVTGFDRTTIIGRNCRFLQGPGTAPAAVQRIRDAL 445
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV----SRKHM 139
PI LLNY++DGTPF+ L + + G+ +F+ QV + SRK++
Sbjct: 446 NNAEPITELLLNYRRDGTPFFCLVNI-IPLRDTKGQVAYFIGGQVNVTGILSSRKNL 501
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 62/93 (66%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
SFVL +P L D P+V +S F K+TG+DR ++G+NCRFL G T + +I++++
Sbjct: 389 SFVLTNPRLRDHPIVMSSLGFTKVTGFDRTTIIGRNCRFLQGPGTAPAAVQRIRDALNNA 448
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ T +LNYR+D + F+ L++I P+R+ G+V
Sbjct: 449 EPITELLLNYRRDGTPFFCLVNIIPLRDTKGQV 481
>gi|218528865|ref|YP_002419681.1| signal transduction histidine kinase [Methylobacterium extorquens
CM4]
gi|218521168|gb|ACK81753.1| signal transduction histidine kinase [Methylobacterium extorquens
CM4]
Length = 488
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP +PIVF + F K++G+SR EI+GRN R QGP T+ R + IR+A+ P+
Sbjct: 37 ITDPHRPDNPIVFVNGAFSKLTGYSREEILGRNCRFLQGPETDPRDVARIRDAVERRVPV 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
E++LLN+KK G FW +S VF E G+ T+F A Q +
Sbjct: 97 EIDLLNHKKSGEVFWNRLLISPVFDDE-GQLTYFFASQFDVT 137
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 62/95 (65%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ DPH PD P+V+ + AF KLTGY R E++G+NCRFL G +TD + +I+++++
Sbjct: 32 RMPMLITDPHRPDNPIVFVNGAFSKLTGYSREEILGRNCRFLQGPETDPRDVARIRDAVE 91
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +LN++K FWN L ISP+ + G++
Sbjct: 92 RRVPVEIDLLNHKKSGEVFWNRLLISPVFDDEGQL 126
>gi|448633793|ref|ZP_21674292.1| HTR-like protein [Haloarcula vallismortis ATCC 29715]
gi|445750484|gb|EMA01922.1| HTR-like protein [Haloarcula vallismortis ATCC 29715]
Length = 748
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 98/200 (49%), Gaps = 9/200 (4%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ A+DE P TIT P PI +A+R FL+++G++ + + GRN R QG T +
Sbjct: 257 IKRAMDEAPIGITITGPEQEDTPITYANRRFLELTGYTESAVRGRNCRFLQGEETESEPV 316
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+R AI + P+ V L NY+KDGT FW ++ V +DG ++V Q + RK
Sbjct: 317 DAMRAAIETDEPVSVELRNYRKDGTMFWNQVTIAPVR-DDDGTVVNYVGFQQDVTERKEH 375
Query: 140 RNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDL 199
+ + SE +++++ R EV + VL L+++ L ED L
Sbjct: 376 EHRLKALSE-----SVQDLLRADTREEVAEIGVETARTVLGLEANTIHLYNEDE---RTL 427
Query: 200 EKRKAATAIDNILSVLTHYS 219
E A+ AI ++ L ++
Sbjct: 428 EPAAASDAIYELIDDLPTFT 447
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 66/107 (61%), Gaps = 7/107 (6%)
Query: 247 LGRIKQSF-------VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
L RIK++ + P D P+ YA+ FL+LTGY + V G+NCRFL G +T++
Sbjct: 254 LTRIKRAMDEAPIGITITGPEQEDTPITYANRRFLELTGYTESAVRGRNCRFLQGEETES 313
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ ++ +I+T++ +V + NYRKD + FWN + I+P+R+ G V+
Sbjct: 314 EPVDAMRAAIETDEPVSVELRNYRKDGTMFWNQVTIAPVRDDDGTVV 360
>gi|336270302|ref|XP_003349910.1| hypothetical protein SMAC_00803 [Sordaria macrospora k-hell]
gi|380095299|emb|CCC06772.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 798
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 69/120 (57%), Gaps = 3/120 (2%)
Query: 219 SQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278
SQ RL + P S S Y+ LG +F L D P+ P+V AS+ FL++ G
Sbjct: 263 SQFADRLRASLSVTQPSFSSPSKSTYLGLG---NAFCLTDSWKPNNPIVSASEGFLRMFG 319
Query: 279 YDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
Y+R EV+ +NCRF+ G T++ + +I+ +I T Q T I+NYRKD + FWN L I P+
Sbjct: 320 YERQEVLQKNCRFMQGHSTNSDAVRRIRNAIFTGQEHTEVIVNYRKDGTPFWNFLFICPL 379
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L ++F +TD +PIV AS GFL+M G+ R E++ +N R QG TN + IR AI
Sbjct: 291 LGNAFCLTDSWKPNNPIVSASEGFLRMFGYERQEVLQKNCRFMQGHSTNSDAVRRIRNAI 350
Query: 87 REERPIEVNLLNYKKDGTPFW-MLFKMSLVFGKEDGRATHFVAVQVPI 133
+ ++NY+KDGTPFW LF LV EDG +++ Q+ I
Sbjct: 351 FTGQEHTEVIVNYRKDGTPFWNFLFICPLV---EDGIVRYYLGGQINI 395
>gi|372280141|ref|ZP_09516177.1| putative signal transduction histidine kinase [Oceanicola sp. S124]
Length = 346
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 62/93 (66%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
S VL DP LPD P+VY + AF ++TGY +G+NCRFL G +TD + +++E++ E
Sbjct: 29 SMVLTDPALPDNPIVYVNRAFEEVTGYMSGMAIGRNCRFLQGENTDPDDIKRLREALDRE 88
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ CTV ++NYR D S F N L ++PIR+ G +
Sbjct: 89 EDCTVDLVNYRADGSEFINRLMMTPIRSEDGSL 121
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
S +TDP++ +PIV+ +R F +++G+ IGRN R QG T+ I +REA+ E
Sbjct: 29 SMVLTDPALPDNPIVYVNRAFEEVTGYMSGMAIGRNCRFLQGENTDPDDIKRLREALDRE 88
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
V+L+NY+ DG+ F M+ + EDG +F+ +Q P+
Sbjct: 89 EDCTVDLVNYRADGSEFINRLMMTPIR-SEDGSLRYFLGMQKPLA 132
>gi|448319142|ref|ZP_21508648.1| bacterio-opsin activator [Natronococcus jeotgali DSM 18795]
gi|445596756|gb|ELY50840.1| bacterio-opsin activator [Natronococcus jeotgali DSM 18795]
Length = 619
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P TI+DPS +P+V+ + + +++G+ +++GRN R+ QG ++ + E+
Sbjct: 124 AINEAPVGITISDPSREDNPLVYINEAYEEITGYDYEDVVGRNCRILQGEASDPEAVAEM 183
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
R I EERP+ V L NY+KDGT FW ++ V + G TH+V Q + +RK
Sbjct: 184 RTGIDEERPVTVELTNYRKDGTAFWNEVTIAPVR-NDAGEVTHYVGFQNDVTARKEA 239
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 61/92 (66%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ DP D P+VY ++A+ ++TGYD +VVG+NCR L G +D + +++ I E+
Sbjct: 132 ITISDPSREDNPLVYINEAYEEITGYDYEDVVGRNCRILQGEASDPEAVAEMRTGIDEER 191
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV + NYRKD ++FWN + I+P+RN +G+V
Sbjct: 192 PVTVELTNYRKDGTAFWNEVTIAPVRNDAGEV 223
>gi|223997702|ref|XP_002288524.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975632|gb|EED93960.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 96
Score = 94.4 bits (233), Expect = 8e-17, Method: Composition-based stats.
Identities = 42/88 (47%), Positives = 57/88 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
FVL DP LPD P+V+AS F KLTGY R++V+G+NCRFL G TD + I+ +I
Sbjct: 1 FVLSDPRLPDNPIVFASPGFYKLTGYTRDQVLGRNCRFLQGTGTDPKAIDVIRTAIANGT 60
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNA 341
T LNY+ D + FWN L ++ +R+A
Sbjct: 61 DATTCFLNYKADGTPFWNQLFVAALRDA 88
Score = 81.6 bits (200), Expect = 5e-13, Method: Composition-based stats.
Identities = 39/85 (45%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
F ++DP + +PIVFAS GF K++G++R +++GRN R QG T+ + I IR AI
Sbjct: 1 FVLSDPRLPDNPIVFASPGFYKLTGYTRDQVLGRNCRFLQGTGTDPKAIDVIRTAIANGT 60
Query: 91 PIEVNLLNYKKDGTPFW-MLFKMSL 114
LNYK DGTPFW LF +L
Sbjct: 61 DATTCFLNYKADGTPFWNQLFVAAL 85
>gi|254559559|ref|YP_003066654.1| sensory transduction histidine kinase [Methylobacterium extorquens
DM4]
gi|254266837|emb|CAX22636.1| putative SENSORY TRANSDUCTION HISTIDINE KINASE of the HWE family
[Methylobacterium extorquens DM4]
Length = 488
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP +PIVF + F K++G+SR EI+GRN R QGP T+ R + IR+A+ P+
Sbjct: 37 ITDPHRPDNPIVFVNGAFSKLTGYSREEILGRNCRFLQGPETDPRDVARIRDAVERRVPV 96
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
E++LLN+KK G FW +S VF E G+ T+F A Q +
Sbjct: 97 EIDLLNHKKSGEVFWNRLLISPVFDDE-GQLTYFFASQFDVT 137
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 62/95 (65%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ DPH PD P+V+ + AF KLTGY R E++G+NCRFL G +TD + +I+++++
Sbjct: 32 RMPMLITDPHRPDNPIVFVNGAFSKLTGYSREEILGRNCRFLQGPETDPRDVARIRDAVE 91
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +LN++K FWN L ISP+ + G++
Sbjct: 92 RRVPVEIDLLNHKKSGEVFWNRLLISPVFDDEGQL 126
>gi|338998341|ref|ZP_08637015.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Halomonas sp. TD01]
gi|338764658|gb|EGP19616.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Halomonas sp. TD01]
Length = 816
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 63/91 (69%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
V++D D+P+VY + AF ++TGY R+ +GQNCRFL G +TD L ++++ I ++Q
Sbjct: 265 VIVDAQQHDLPIVYVNAAFERITGYSRDTALGQNCRFLQGEETDPATLKKLRKGIYSQQE 324
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
V I N+R++ FWN L+ISP+R+A+G V
Sbjct: 325 VHVVIRNHRRNGMPFWNDLYISPVRDATGAV 355
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
Query: 7 LIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNG 66
+ E+ R + +++ + I D PIV+ + F +++G+SR +G+N
Sbjct: 240 ITERKATERQLTLLERSVESSTNGVVIVDAQQHDLPIVYVNAAFERITGYSRDTALGQNC 299
Query: 67 RMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHF 126
R QG T+ T+ ++R+ I ++ + V + N++++G PFW +S V G THF
Sbjct: 300 RFLQGEETDPATLKKLRKGIYSQQEVHVVIRNHRRNGMPFWNDLYISPV-RDATGAVTHF 358
Query: 127 VAVQVPIVSRK 137
V VQ I +++
Sbjct: 359 VGVQNDITAQR 369
>gi|224000493|ref|XP_002289919.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975127|gb|EED93456.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 102
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 62/93 (66%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
F++ DP L D P+VYAS+ FL LTGY + EV+G+NCRFL G +T + I++++ +
Sbjct: 1 FIITDPSLHDNPIVYASNDFLNLTGYAQEEVLGRNCRFLQGTETSREKVAMIRKAVSVGE 60
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
C V ++NYR D + FWN L I+ +R+A ++
Sbjct: 61 DCNVTLVNYRSDGTPFWNSLFIAALRDAEDNIV 93
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
F ITDPS+ +PIV+AS FL ++G+++ E++GRN R QG T+R + IR+A+
Sbjct: 1 FIITDPSLHDNPIVYASNDFLNLTGYAQEEVLGRNCRFLQGTETSREKVAMIRKAVSVGE 60
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
V L+NY+ DGTPFW ++ + ED +F+ V V +
Sbjct: 61 DCNVTLVNYRSDGTPFWNSLFIAALRDAEDN-IVNFIGVIVKV 102
>gi|322370523|ref|ZP_08045081.1| bacterio-opsin activator [Haladaptatus paucihalophilus DX253]
gi|320549940|gb|EFW91596.1| bacterio-opsin activator [Haladaptatus paucihalophilus DX253]
Length = 621
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 60/92 (65%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ D D P++Y ++AF +LTGYD +EV G NCRFL G +D + ++++I E+
Sbjct: 130 ITIADAESGDQPLLYVNEAFEELTGYDFDEVQGHNCRFLQGEHSDADAVAAMRDAIDAEE 189
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+V +LNYRKD + FWN + I+PIR+ +G V
Sbjct: 190 PVSVELLNYRKDGTEFWNRVDIAPIRDETGTV 221
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P TI D P+++ + F +++G+ E+ G N R QG ++ + +
Sbjct: 122 AINEAPVGITIADAESGDQPLLYVNEAFEELTGYDFDEVQGHNCRFLQGEHSDADAVAAM 181
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R+AI E P+ V LLNY+KDGT FW ++ + E G THFV Q I RK +
Sbjct: 182 RDAIDAEEPVSVELLNYRKDGTEFWNRVDIAPI-RDETGTVTHFVGFQTDISERKRAEEA 240
Query: 143 G 143
Sbjct: 241 A 241
>gi|448560681|ref|ZP_21634129.1| bacterio-opsin activator [Haloferax prahovense DSM 18310]
gi|445722331|gb|ELZ73994.1| bacterio-opsin activator [Haloferax prahovense DSM 18310]
Length = 658
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 1/128 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+DE P T+ D S+ P+V+ + F M+G+S +GRN R QGP T+ +
Sbjct: 136 EQAIDEAPVGITVADCSLPDRPLVYVNEAFEAMTGYSADAALGRNCRYLQGPNTDPERVA 195
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140
E+R AI E V LLNY+ +G FW ++ + G DG TH+V Q I R
Sbjct: 196 ELRRAIEAEESASVELLNYRANGETFWNRVDVAPLSGP-DGEVTHYVGFQTDITERVRAE 254
Query: 141 NSGMSYSE 148
+ Y+E
Sbjct: 255 TAAERYAE 262
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 60/92 (65%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ D LPD P+VY ++AF +TGY + +G+NCR+L G +TD + +++ +I+ E+
Sbjct: 146 ITVADCSLPDRPLVYVNEAFEAMTGYSADAALGRNCRYLQGPNTDPERVAELRRAIEAEE 205
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +V +LNYR + +FWN + ++P+ G+V
Sbjct: 206 SASVELLNYRANGETFWNRVDVAPLSGPDGEV 237
>gi|424878480|ref|ZP_18302120.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WU95]
gi|392520972|gb|EIW45701.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WU95]
Length = 411
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 64/96 (66%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ DP D P+++ + AF K+TGY +E++G+NCR L G +TD + I++S+
Sbjct: 72 RMPMIVTDPAQHDNPIIFCNAAFEKMTGYSNDELIGRNCRLLQGPETDRRSVGYIRDSVA 131
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
Q +V ILNYRKD S+FWN L ISP+R+ G+++
Sbjct: 132 RGQDISVDILNYRKDGSTFWNALFISPVRDDEGRII 167
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+F + F KM+G+S E+IGRN R+ QGP T+RR++ IR+++ + I
Sbjct: 77 VTDPAQHDNPIIFCNAAFEKMTGYSNDELIGRNCRLLQGPETDRRSVGYIRDSVARGQDI 136
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
V++LNY+KDG+ FW +S V E GR +F A Q+ + K
Sbjct: 137 SVDILNYRKDGSTFWNALFISPVRDDE-GRIIYFFASQLDFTTVK 180
>gi|67925445|ref|ZP_00518788.1| PAS [Crocosphaera watsonii WH 8501]
gi|67852704|gb|EAM48120.1| PAS [Crocosphaera watsonii WH 8501]
Length = 297
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 63/107 (58%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S LY ++ S V+ D D P++Y + F +TGY EV G+NCRFL G D
Sbjct: 163 SHLLYQAIAATNNSIVITDATASDYPIIYVNPGFEIMTGYSLQEVTGKNCRFLQGSDDQQ 222
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
L QI++ +Q ++C V + NYRKD S FWN + +SPI++ SG +L
Sbjct: 223 PELEQIRDCLQKGESCHVTLRNYRKDGSLFWNEMSLSPIKDESGNIL 269
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+++A+ +S ITD + S +PI++ + GF M+G+S E+ G+N R QG + +
Sbjct: 166 LYQAIAATNNSIVITDATASDYPIIYVNPGFEIMTGYSLQEVTGKNCRFLQGSDDQQPEL 225
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+IR+ +++ V L NY+KDG+ FW +S + E G +++ VQ + +K +
Sbjct: 226 EQIRDCLQKGESCHVTLRNYRKDGSLFWNEMSLSPI-KDESGNILYYLGVQTDVTDKKKL 284
>gi|241666844|ref|YP_002984928.1| signal transduction histidine kinase [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240862301|gb|ACS59966.1| signal transduction histidine kinase [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 375
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 64/96 (66%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ DP D P+++ + AF K+TGY +E++G+NCR L G +TD + I++S+
Sbjct: 36 RMPMIVTDPAQHDNPIIFCNAAFEKMTGYSNDELIGRNCRLLQGPETDRRSVGYIRDSVA 95
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
Q +V ILNYRKD S+FWN L ISP+R+ G+++
Sbjct: 96 RGQDISVDILNYRKDGSTFWNALFISPVRDDEGRII 131
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI+F + F KM+G+S E+IGRN R+ QGP T+RR++ IR+++ + I
Sbjct: 41 VTDPAQHDNPIIFCNAAFEKMTGYSNDELIGRNCRLLQGPETDRRSVGYIRDSVARGQDI 100
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
V++LNY+KDG+ FW +S V E GR +F A Q+ + K
Sbjct: 101 SVDILNYRKDGSTFWNALFISPVRDDE-GRIIYFFASQLDFTTVK 144
>gi|448466718|ref|ZP_21599223.1| light- and oxygen-sensing histidine kinase [Halorubrum kocurii JCM
14978]
gi|445813578|gb|EMA63555.1| light- and oxygen-sensing histidine kinase [Halorubrum kocurii JCM
14978]
Length = 913
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALDE S ITDP+ G+P+V+ + F++++G+ R+E +GRN R QGP ++ T I
Sbjct: 204 ALDEAGTSIQITDPTQPGNPLVYVNEEFVQLTGYERSEALGRNPRFLQGPGSDSETTKRI 263
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R AI ERPI L NY +G P+W ++ V +G T+++ VQ I ++
Sbjct: 264 RTAIETERPITTKLRNYTAEGEPYWAKLSVTPVR-DANGIVTNYIGVQHDITEQR 317
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 63/100 (63%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L S + DP P P+VY ++ F++LTGY+R+E +G+N RFL G +D+ +I
Sbjct: 204 ALDEAGTSIQITDPTQPGNPLVYVNEEFVQLTGYERSEALGRNPRFLQGPGSDSETTKRI 263
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +I+TE+ T ++ NY + +W L ++P+R+A+G V
Sbjct: 264 RTAIETERPITTKLRNYTAEGEPYWAKLSVTPVRDANGIV 303
>gi|384248305|gb|EIE21789.1| hypothetical protein COCSUDRAFT_17195 [Coccomyxa subellipsoidea
C-169]
Length = 143
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 63/93 (67%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
K+ + D PDMP++YA++AF ++TGY E +G+NCRFL G TD L +++ + +
Sbjct: 5 KEGITIADCSQPDMPLIYANEAFARITGYSVAESLGKNCRFLQGPGTDEAPLEELRRATR 64
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
QAC V+++NYRK+ +F N L ++PI +++G
Sbjct: 65 QGQACVVQLMNYRKNGDAFVNYLSVTPIHDSAG 97
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
+D + TI D S P+++A+ F +++G+S AE +G+N R QGP T+ + E+R
Sbjct: 1 MDNTKEGITIADCSQPDMPLIYANEAFARITGYSVAESLGKNCRFLQGPGTDEAPLEELR 60
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
A R+ + V L+NY+K+G F ++ + G TH+V +Q I
Sbjct: 61 RATRQGQACVVQLMNYRKNGDAFVNYLSVTPIHDSA-GVLTHYVGIQSDIT 110
>gi|448407766|ref|ZP_21573961.1| light and redox sensing histidine kinase [Halosimplex carlsbadense
2-9-1]
gi|445675016|gb|ELZ27551.1| light and redox sensing histidine kinase [Halosimplex carlsbadense
2-9-1]
Length = 972
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 59/92 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ DP D P+VYA++ F +LTGYD EV+G+NCRFL G DT + ++ +I +
Sbjct: 268 ITIADPTRDDNPIVYANERFEQLTGYDEAEVLGRNCRFLQGADTAGEPVAAMRSAIDAGE 327
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV + NYRKD + FWN + I+P+R+A G +
Sbjct: 328 PVTVELRNYRKDGTEFWNRVSIAPVRSAEGTI 359
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P TI DP+ +PIV+A+ F +++G+ AE++GRN R QG T + +
Sbjct: 260 AMNEAPVGITIADPTRDDNPIVYANERFEQLTGYDEAEVLGRNCRFLQGADTAGEPVAAM 319
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
R AI P+ V L NY+KDGT FW ++ V E G T++V Q + +
Sbjct: 320 RSAIDAGEPVTVELRNYRKDGTEFWNRVSIAPVRSAE-GTITNYVGFQRDVTA 371
>gi|397570935|gb|EJK47540.1| hypothetical protein THAOC_33732 [Thalassiosira oceanica]
Length = 575
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 64/100 (64%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
SL SL +Q+FVL DP L D P+V+AS F +LTGY R +V+G+NCRFL G TD
Sbjct: 463 SLIESLTSGQQNFVLSDPRLQDNPIVFASPGFYELTGYTREQVLGRNCRFLQGNGTDRKA 522
Query: 302 LYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNA 341
+ IK ++ TV +LNY+ D + FWN L ++ +R++
Sbjct: 523 IEVIKTAVANGTDATVCLLNYKADGTPFWNQLFVAALRDS 562
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
E+L +F ++DP + +PIVFAS GF +++G++R +++GRN R QG T+R+ I
Sbjct: 466 ESLTSGQQNFVLSDPRLQDNPIVFASPGFYELTGYTREQVLGRNCRFLQGNGTDRKAIEV 525
Query: 82 IREAIREERPIEVNLLNYKKDGTPFW-MLFKMSL 114
I+ A+ V LLNYK DGTPFW LF +L
Sbjct: 526 IKTAVANGTDATVCLLNYKADGTPFWNQLFVAAL 559
>gi|298707248|emb|CBJ25875.1| aureochrome 1 [Ectocarpus siliculosus]
Length = 621
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 66/105 (62%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
SL +L +Q+FV+ D LPD P+V+AS FL LT Y EV+G+NCRFL G +TD
Sbjct: 437 SLVKALQTAQQNFVITDASLPDNPIVFASGGFLALTRYKLVEVLGRNCRFLQGAETDPKA 496
Query: 302 LYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +I+++I +V +LNYR D ++FWN ++ +R+ G +
Sbjct: 497 VDKIRKAIDEGYDTSVCLLNYRADGTTFWNQFFVASLRDGKGNTV 541
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 65/110 (59%), Gaps = 3/110 (2%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+AL +F ITD S+ +PIVFAS GFL ++ + E++GRN R QG T+ + + +
Sbjct: 440 KALQTAQQNFVITDASLPDNPIVFASGGFLALTRYKLVEVLGRNCRFLQGAETDPKAVDK 499
Query: 82 IREAIREERPIEVNLLNYKKDGTPFW-MLFKMSLVFGKEDGRATHFVAVQ 130
IR+AI E V LLNY+ DGT FW F SL GK G ++V VQ
Sbjct: 500 IRKAIDEGYDTSVCLLNYRADGTTFWNQFFVASLRDGK--GNTVNYVGVQ 547
>gi|427410482|ref|ZP_18900684.1| PAS domain S-box protein [Sphingobium yanoikuyae ATCC 51230]
gi|425712615|gb|EKU75630.1| PAS domain S-box protein [Sphingobium yanoikuyae ATCC 51230]
Length = 460
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 67/102 (65%), Gaps = 1/102 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP+ + +PIVF + F +++G++ EIIGRN R QGP T+R + +R+AI + I
Sbjct: 3 ITDPNQADNPIVFVNEAFSRLTGYAHQEIIGRNCRFLQGPDTDRNDVARLRDAIAAKTLI 62
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
E++LLNYKKDGT FW +S VF E G+ ++F A Q +
Sbjct: 63 ELDLLNYKKDGTTFWNRVLVSPVFDGE-GQLSYFFASQFDVT 103
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 63/92 (68%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ DP+ D P+V+ ++AF +LTGY E++G+NCRFL G DTD + +++++I +
Sbjct: 1 MLITDPNQADNPIVFVNEAFSRLTGYAHQEIIGRNCRFLQGPDTDRNDVARLRDAIAAKT 60
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +LNY+KD ++FWN + +SP+ + G++
Sbjct: 61 LIELDLLNYKKDGTTFWNRVLVSPVFDGEGQL 92
>gi|383460060|gb|AFH34990.1| YF1 [Expression vector pDusk]
gi|383460065|gb|AFH34994.1| YF1 [Expression vector pDawn]
Length = 380
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 62/93 (66%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L ++ V+ DP L D P+VY + F+++TGY+ E++G+NCRFL G TD + I
Sbjct: 19 ALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNI 78
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
+ ++Q ++ TV+I NY+KD + FWN L+I P+
Sbjct: 79 RTALQNKEPVTVQIQNYKKDGTMFWNELNIDPM 111
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 70/121 (57%), Gaps = 3/121 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD + ITDP++ +PIV+ ++GF++M+G+ EI+G+N R QG T+ +
Sbjct: 16 IKKALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
IR A++ + P+ V + NYKKDGT FW + + E T+FV +Q I +
Sbjct: 76 DNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPM---EIEDKTYFVGIQNDITEHQQT 132
Query: 140 R 140
+
Sbjct: 133 Q 133
>gi|302846732|ref|XP_002954902.1| hypothetical protein VOLCADRAFT_65257 [Volvox carteri f.
nagariensis]
gi|218218151|gb|ACK76426.1| smallest phototropin-like protein [synthetic construct]
gi|300259877|gb|EFJ44101.1| hypothetical protein VOLCADRAFT_65257 [Volvox carteri f.
nagariensis]
Length = 133
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 68/110 (61%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
+D L + TI D S+ P+++A+ GF++ +G+S +IG+N R QG T+ + + E++
Sbjct: 1 MDVLQEGITIADCSMPDMPLIYANAGFVRTTGYSVEYVIGKNCRFLQGEGTDGQPVQELK 60
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
EAI++ R V LLNYKK+G PF ++ ++ GR TH+V VQ I
Sbjct: 61 EAIKQGRACVVQLLNYKKNGDPFVNYLSLTPIYDTATGRLTHYVGVQSDI 110
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+++ + D +PDMP++YA+ F++ TGY V+G+NCRFL G TD + ++KE+I
Sbjct: 4 LQEGITIADCSMPDMPLIYANAGFVRTTGYSVEYVIGKNCRFLQGEGTDGQPVQELKEAI 63
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRN-ASGKV 345
+ +AC V++LNY+K+ F N L ++PI + A+G++
Sbjct: 64 KQGRACVVQLLNYKKNGDPFVNYLSLTPIYDTATGRL 100
>gi|448563671|ref|ZP_21635598.1| PAS sensor protein [Haloferax prahovense DSM 18310]
gi|445717610|gb|ELZ69324.1| PAS sensor protein [Haloferax prahovense DSM 18310]
Length = 732
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE TIT PS PIV+A+ F ++G+ E++G N R+ QGP T
Sbjct: 392 AIDEASVGITITGPSEDDCPIVYANDAFEDLTGYDAEEVLGENHRVLQGPDTAEEDCERF 451
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
REAI +E P V LLNY++DGTPFW +++ V G +DG T+++ Q
Sbjct: 452 REAIADEEPCSVELLNYRRDGTPFWNQSEITPVHG-DDGSVTNYIGFQ 498
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 54/87 (62%)
Query: 259 PHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVR 318
P D P+VYA+DAF LTGYD EV+G+N R L G DT + +E+I E+ C+V
Sbjct: 405 PSEDDCPIVYANDAFEDLTGYDAEEVLGENHRVLQGPDTAEEDCERFREAIADEEPCSVE 464
Query: 319 ILNYRKDKSSFWNLLHISPIRNASGKV 345
+LNYR+D + FWN I+P+ G V
Sbjct: 465 LLNYRRDGTPFWNQSEITPVHGDDGSV 491
>gi|308174707|ref|YP_003921412.1| blue light GTP-binding receptor [Bacillus amyloliquefaciens DSM 7]
gi|384160548|ref|YP_005542621.1| blue light GTP-binding receptor [Bacillus amyloliquefaciens TA208]
gi|384165490|ref|YP_005546869.1| blue light GTP-binding receptor [Bacillus amyloliquefaciens LL3]
gi|384169636|ref|YP_005551014.1| blue light GTP-binding receptor [Bacillus amyloliquefaciens XH7]
gi|307607571|emb|CBI43942.1| blue light GTP-binding receptor [Bacillus amyloliquefaciens DSM 7]
gi|328554636|gb|AEB25128.1| blue light GTP-binding receptor [Bacillus amyloliquefaciens TA208]
gi|328913045|gb|AEB64641.1| blue light GTP-binding receptor [Bacillus amyloliquefaciens LL3]
gi|341828915|gb|AEK90166.1| blue light GTP-binding receptor [Bacillus amyloliquefaciens XH7]
Length = 261
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 72/119 (60%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD ITDPS+ +PI++ ++GF+ M+G+S EI+G+N R QG T+R+ +
Sbjct: 16 IKKALDHARIGVVITDPSLEDNPIIYTNQGFMDMTGYSSEEILGKNCRFLQGKETDRKQV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+IR++++ + I V L N KKDGTPFW + ++ ++ +FV Q I +K
Sbjct: 76 AKIRKSLKHKEKITVRLKNVKKDGTPFWNELNIDPLYVED---KLYFVGFQKDITEQKE 131
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 61/93 (65%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + V+ DP L D P++Y + F+ +TGY E++G+NCRFL G +TD + +I
Sbjct: 19 ALDHARIGVVITDPSLEDNPIIYTNQGFMDMTGYSSEEILGKNCRFLQGKETDRKQVAKI 78
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
++S++ ++ TVR+ N +KD + FWN L+I P+
Sbjct: 79 RKSLKHKEKITVRLKNVKKDGTPFWNELNIDPL 111
>gi|397627045|gb|EJK68328.1| hypothetical protein THAOC_10501 [Thalassiosira oceanica]
Length = 317
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 67/101 (66%), Gaps = 1/101 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SF ITDPS +PIVFAS GF K++G+S E++GRN R QGP T+R+ +++I +A+ E
Sbjct: 191 SFCITDPSQIDNPIVFASDGFYKLTGYSEHEVLGRNCRFLQGPHTDRKEVVKITQALMNE 250
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
+ ++L NYKKDGTPF F ++ + D +F+ +Q
Sbjct: 251 DELTIHLTNYKKDGTPFRNEFYLANLRSP-DKSIAYFIGLQ 290
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 58/93 (62%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
SF + DP D P+V+ASD F KLTGY +EV+G+NCRFL G TD + +I +++ E
Sbjct: 191 SFCITDPSQIDNPIVFASDGFYKLTGYSEHEVLGRNCRFLQGPHTDRKEVVKITQALMNE 250
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
T+ + NY+KD + F N +++ +R+ +
Sbjct: 251 DELTIHLTNYKKDGTPFRNEFYLANLRSPDKSI 283
>gi|428312493|ref|YP_007123470.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428254105|gb|AFZ20064.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 662
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 76/122 (62%), Gaps = 4/122 (3%)
Query: 20 VHEALDELPDSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNR 76
+ A++ D IT+ G +++ ++ F +++G+ E++GR R+ QGP+T+R
Sbjct: 420 LESAVENTQDGILITEAKHIDAPGPELLYVNQAFTRITGYDLTEVLGRTPRLLQGPKTDR 479
Query: 77 RTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+ +IR A++E++P++V LLNY+KDG+ FW+ + + KE G+ TH+VA+Q I R
Sbjct: 480 SQLDKIRTALQEQKPVQVELLNYRKDGSEFWVELNIVPIASKE-GKVTHWVALQREITER 538
Query: 137 KH 138
K
Sbjct: 539 KQ 540
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 53/84 (63%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILN 321
P ++Y + AF ++TGYD EV+G+ R L G TD + L +I+ ++Q ++ V +LN
Sbjct: 442 PGPELLYVNQAFTRITGYDLTEVLGRTPRLLQGPKTDRSQLDKIRTALQEQKPVQVELLN 501
Query: 322 YRKDKSSFWNLLHISPIRNASGKV 345
YRKD S FW L+I PI + GKV
Sbjct: 502 YRKDGSEFWVELNIVPIASKEGKV 525
>gi|429191076|ref|YP_007176754.1| PAS domain-containing protein [Natronobacterium gregoryi SP2]
gi|448327353|ref|ZP_21516683.1| bacterio-opsin activator [Natronobacterium gregoryi SP2]
gi|429135294|gb|AFZ72305.1| PAS domain S-box [Natronobacterium gregoryi SP2]
gi|445608586|gb|ELY62420.1| bacterio-opsin activator [Natronobacterium gregoryi SP2]
Length = 616
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 71/116 (61%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P TI+DP +P+V+ + + +++G+S +++GRN R+ QGP ++ TI E+
Sbjct: 120 AINEAPVGITISDPDREDNPLVYINDAYREITGYSYDDVVGRNCRLLQGPDSDEETIAEM 179
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
A+ E+ P+ V + NY+KDGT FW ++ V E G T++V Q I +RK
Sbjct: 180 AAAVDEDYPVTVEIKNYRKDGTEFWNEVTIAPVRNDE-GEVTNYVGFQNDITARKE 234
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 59/92 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ DP D P+VY +DA+ ++TGY ++VVG+NCR L G D+D + ++ ++ +
Sbjct: 128 ITISDPDREDNPLVYINDAYREITGYSYDDVVGRNCRLLQGPDSDEETIAEMAAAVDEDY 187
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV I NYRKD + FWN + I+P+RN G+V
Sbjct: 188 PVTVEIKNYRKDGTEFWNEVTIAPVRNDEGEV 219
>gi|393770521|ref|ZP_10359009.1| signal transduction histidine kinase [Methylobacterium sp. GXF4]
gi|392724065|gb|EIZ81442.1| signal transduction histidine kinase [Methylobacterium sp. GXF4]
Length = 489
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 63/95 (66%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ V+ DP LPD P+VY +DAF++LTGY R E++G+NCRFL G +T + +++++I+
Sbjct: 32 RMPMVITDPRLPDNPIVYVNDAFVRLTGYAREEIIGRNCRFLQGPETSLKDVARVRDAIE 91
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ + N RKD + FWN L +SP+ + G++
Sbjct: 92 RRVTIEIDLKNRRKDGTVFWNRLLVSPVFASDGEL 126
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
ITDP + +PIV+ + F++++G++R EIIGRN R QGP T+ + + +R+AI
Sbjct: 35 MVITDPRLPDNPIVYVNDAFVRLTGYAREEIIGRNCRFLQGPETSLKDVARVRDAIERRV 94
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IE++L N +KDGT FW +S VF DG T+F A Q + K
Sbjct: 95 TIEIDLKNRRKDGTVFWNRLLVSPVFAS-DGELTYFFASQYDVTLEKE 141
>gi|311069523|ref|YP_003974446.1| blue light GTP-binding receptor [Bacillus atrophaeus 1942]
gi|419819819|ref|ZP_14343437.1| blue light GTP-binding receptor [Bacillus atrophaeus C89]
gi|310870040|gb|ADP33515.1| blue light GTP-binding receptor [Bacillus atrophaeus 1942]
gi|388475938|gb|EIM12643.1| blue light GTP-binding receptor [Bacillus atrophaeus C89]
Length = 263
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD +TDP++ +PIV+ + GF++++G+S EI+G+N R QG +T+ + +
Sbjct: 16 IKKALDHARVGVVMTDPALEDNPIVYVNNGFVQLTGYSPDEILGKNCRFLQGNQTDAQEV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+IR + ++PI V L NYKKDGT FW + ++ +++ + T+FV Q I +K
Sbjct: 76 AKIRTGLTNKQPITVQLQNYKKDGTMFWNELNIDPIYIEQEDK-TYFVGFQKDITQQKE 133
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 61/93 (65%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + V+ DP L D P+VY ++ F++LTGY +E++G+NCRFL G TD + +I
Sbjct: 19 ALDHARVGVVMTDPALEDNPIVYVNNGFVQLTGYSPDEILGKNCRFLQGNQTDAQEVAKI 78
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
+ + +Q TV++ NY+KD + FWN L+I PI
Sbjct: 79 RTGLTNKQPITVQLQNYKKDGTMFWNELNIDPI 111
>gi|158853255|dbj|BAF91489.1| aureochrome2 [Vaucheria frigida]
gi|158853259|dbj|BAF91491.1| aureochrome2 [Vaucheria frigida]
Length = 343
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 69/105 (65%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
+L +L + SF + +P +PD P+V+ASD+F+K+TGY R +V+G+NCRFL G DTD
Sbjct: 214 TLMKALYSSQPSFCVTNPLVPDCPIVFASDSFIKITGYSREQVLGRNCRFLQGPDTDPDA 273
Query: 302 LYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +++ I + V ILNY FWN + I+ +R++SG+V+
Sbjct: 274 VRILRKGIVEGKDTDVTILNYNASGEPFWNHVFIAALRDSSGQVI 318
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 73/133 (54%), Gaps = 7/133 (5%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + +AL SF +T+P + PIVFAS F+K++G+SR +++GRN R QGP T
Sbjct: 210 RSDFTLMKALYSSQPSFCVTNPLVPDCPIVFASDSFIKITGYSREQVLGRNCRFLQGPDT 269
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFW-MLFKMSLVFGKEDGRATHFVA----V 129
+ + +R+ I E + +V +LNY G PFW +F +L G+ +FV V
Sbjct: 270 DPDAVRILRKGIVEGKDTDVTILNYNASGEPFWNHVFIAAL--RDSSGQVINFVGIQHVV 327
Query: 130 QVPIVSRKHMRNS 142
Q P++ R N+
Sbjct: 328 QRPVIDRGQGENN 340
>gi|448495827|ref|ZP_21610218.1| signal-transducing histidine kinase/response regulator [Halorubrum
californiensis DSM 19288]
gi|445687586|gb|ELZ39867.1| signal-transducing histidine kinase/response regulator [Halorubrum
californiensis DSM 19288]
Length = 683
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 64/100 (64%), Gaps = 7/100 (7%)
Query: 246 SLGRIKQSF-------VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
L R++Q+ L DP D P+VY +DAF ++TGY NE +G+NCRFL G DT+
Sbjct: 75 ELSRLQQAIDGANVPITLADPSQEDDPLVYVNDAFEEMTGYPPNETLGRNCRFLQGEDTN 134
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
+ ++E+I +E++ TV + NYRKD + FWN + ++PI
Sbjct: 135 LEKVATLRETIDSEESVTVSLRNYRKDGTEFWNRVTVTPI 174
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 1/119 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +A+D T+ DPS P+V+ + F +M+G+ E +GRN R QG TN +
Sbjct: 79 LQQAIDGANVPITLADPSQEDDPLVYVNDAFEEMTGYPPNETLGRNCRFLQGEDTNLEKV 138
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+RE I E + V+L NY+KDGT FW ++ ++ +D ++ Q + RK
Sbjct: 139 ATLRETIDSEESVTVSLRNYRKDGTEFWNRVTVTPIY-DDDDELVRYLGTQQDVTGRKE 196
>gi|297622520|ref|YP_003703954.1| PAS/PAC sensor signal transduction histidine kinase [Truepera
radiovictrix DSM 17093]
gi|297163700|gb|ADI13411.1| PAS/PAC sensor signal transduction histidine kinase [Truepera
radiovictrix DSM 17093]
Length = 530
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 74/119 (62%), Gaps = 5/119 (4%)
Query: 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRT 78
W+ +ALD ++ +TDP+ +PI++ +RGF +++G++R E +GRN R QG T++
Sbjct: 61 WLLDALDATNNTVIVTDPNQEDNPIIYVNRGFEQLTGYTREEALGRNCRFLQGDDTDQEA 120
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ---VPIV 134
+ +REA+RE R I V L NY+KDG+ FW ++ V+ DG +F VQ P+V
Sbjct: 121 LPALREAVREGRDIRVVLRNYRKDGSLFWNELYVTAVW--RDGVLAYFFGVQNDITPLV 177
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 81/157 (51%), Gaps = 5/157 (3%)
Query: 183 SDDTGLEIEDSCEASDLEKRKAATA-IDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISS 241
S+ +G E +++E A D L L +L R R SL G++
Sbjct: 5 SERSGSRREGEASGAEVEAPGGALGRPDGSLEELAARVRLLERENAALRRSLGDRGWLLD 64
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
+L + + ++ DP+ D P++Y + F +LTGY R E +G+NCRFL G DTD
Sbjct: 65 ALDAT----NNTVIVTDPNQEDNPIIYVNRGFEQLTGYTREEALGRNCRFLQGDDTDQEA 120
Query: 302 LYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
L ++E+++ + V + NYRKD S FWN L+++ +
Sbjct: 121 LPALREAVREGRDIRVVLRNYRKDGSLFWNELYVTAV 157
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Query: 243 LYISLGRIKQSFVLIDPHL--PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTT 300
L ++ + +S V+ L P + Y + AF +L+GY R+EV+G+ R L G TD
Sbjct: 186 LEAAVEQADESIVITGAELERPGPQIRYVNRAFERLSGYRRDEVLGKTPRVLQGPKTDPQ 245
Query: 301 VLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
VL +++ + + +NYRKD S+F N HI+PIR+ +G++
Sbjct: 246 VLAHLRQRLLGGEVFRGETVNYRKDGSAFVNEWHIAPIRSGAGEI 290
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 23 ALDELPDSFTITDPSIS--GHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
A+++ +S IT + G I + +R F ++SG+ R E++G+ R+ QGP+T+ + +
Sbjct: 189 AVEQADESIVITGAELERPGPQIRYVNRAFERLSGYRRDEVLGKTPRVLQGPKTDPQVLA 248
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+R+ + +NY+KDG+ F + ++ + G TH+VA Q + R+ +
Sbjct: 249 HLRQRLLGGEVFRGETVNYRKDGSAFVNEWHIAPIRSGA-GEITHWVATQRDVTERRQL 306
>gi|129560444|dbj|BAF48778.1| LOV domain-containing protein [Marchantia polymorpha]
gi|129560446|dbj|BAF48779.1| LOV domain-containing protein [Marchantia polymorpha]
Length = 712
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 81/154 (52%)
Query: 193 SCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQ 252
S E + + T + S L S+ T P + +S ++ +L +
Sbjct: 227 SAETEGISRLSWTTGSSDTSSALGKSSRTTSEGSSACSSFSPMIPGLSKNVKEALASFQL 286
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
+FV+ D + P++YAS F +TGY EVVG+NCRFL G TD + I+ +++
Sbjct: 287 AFVVCDALNAEYPILYASAGFFSMTGYTAKEVVGRNCRFLQGQYTDAHDIAMIRGALREG 346
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
T ++LNY+KD S FWNLL ISPIR+ G+++
Sbjct: 347 NIYTGKLLNYKKDGSPFWNLLTISPIRDDGGRLI 380
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V EAL +F + D + +PI++AS GF M+G++ E++GRN R QG T+ I
Sbjct: 277 VKEALASFQLAFVVCDALNAEYPILYASAGFFSMTGYTAKEVVGRNCRFLQGQYTDAHDI 336
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
IR A+RE LLNYKKDG+PFW L +S + + GR ++ +Q +
Sbjct: 337 AMIRGALREGNIYTGKLLNYKKDGSPFWNLLTISPIR-DDGGRLIKYIGMQAEVT 390
>gi|421610035|ref|ZP_16051219.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
activity [Rhodopirellula baltica SH28]
gi|408499093|gb|EKK03568.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
activity [Rhodopirellula baltica SH28]
Length = 1637
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
EA+ + ITD S+ HPI F ++GF M+GFS EIIGRN R QG T++ T++
Sbjct: 991 EAVQSAANGIVITDCSLEDHPISFVNKGFTDMTGFSEQEIIGRNCRFLQGEHTDKETVLR 1050
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
IR A+ + + NY+K+G PFW ++ V E+G THFV VQ + R
Sbjct: 1051 IRRALGRGESVRELIKNYRKNGEPFWNDLYITPVH-DENGILTHFVGVQNDVTER 1104
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 53/90 (58%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ D L D P+ + + F +TG+ E++G+NCRFL G TD + +I+ ++ +
Sbjct: 1000 IVITDCSLEDHPISFVNKGFTDMTGFSEQEIIGRNCRFLQGEHTDKETVLRIRRALGRGE 1059
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+ I NYRK+ FWN L+I+P+ + +G
Sbjct: 1060 SVRELIKNYRKNGEPFWNDLYITPVHDENG 1089
>gi|219118462|ref|XP_002180003.1| hypothetical protein PHATRDRAFT_51933 [Phaeodactylum tricornutum
CCAP 1055/1]
gi|217408260|gb|EEC48194.1| hypothetical protein PHATRDRAFT_51933 [Phaeodactylum tricornutum
CCAP 1055/1]
Length = 142
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 71/120 (59%), Gaps = 4/120 (3%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F I+DP++ +PIV+ S+GFL ++G++ +++GRN R QGP T++ + I
Sbjct: 3 ALSGSQQNFAISDPTLPDNPIVYVSQGFLDLTGYTLDQVLGRNCRFLQGPGTDQSAVEVI 62
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI---VSRKHM 139
R+ I E V LLNYK DGTPFW F ++ + E+ H V VQ + V KHM
Sbjct: 63 RKGITEGVDTSVCLLNYKADGTPFWNQFFVASLRDAENNVVNH-VGVQCEVSKAVVEKHM 121
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 63/101 (62%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L +Q+F + DP LPD P+VY S FL LTGY ++V+G+NCRFL G TD + + I
Sbjct: 3 ALSGSQQNFAISDPTLPDNPIVYVSQGFLDLTGYTLDQVLGRNCRFLQGPGTDQSAVEVI 62
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
++ I +V +LNY+ D + FWN ++ +R+A V+
Sbjct: 63 RKGITEGVDTSVCLLNYKADGTPFWNQFFVASLRDAENNVV 103
>gi|428312412|ref|YP_007123389.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428254024|gb|AFZ19983.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 1204
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 59/90 (65%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ D + P+VYA+ F ++TGY EV+GQNCRFL G D + L +++ ++Q E+
Sbjct: 580 IVITDATDSNHPLVYANPGFERITGYSVEEVMGQNCRFLQGTDREQPALTELRTALQQER 639
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASG 343
C V + NYRKD S FWN ISP+RN++G
Sbjct: 640 ECRVVLRNYRKDGSLFWNEFSISPVRNSAG 669
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+ ITD + S HP+V+A+ GF +++G+S E++G+N R QG + + E+R A+++
Sbjct: 578 NGIVITDATDSNHPLVYANPGFERITGYSVEEVMGQNCRFLQGTDREQPALTELRTALQQ 637
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
ER V L NY+KDG+ FW F +S V G TH++ V I K
Sbjct: 638 ERECRVVLRNYRKDGSLFWNEFSISPVRNSA-GILTHYIGVHRDITELKQ 686
>gi|449138117|ref|ZP_21773413.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula europaea 6C]
gi|448883278|gb|EMB13815.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula europaea 6C]
Length = 1637
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
EA+ + ITD S+ +PI FA+ GF++M+GFS EIIGRN R QG T+ T++
Sbjct: 991 EAVQSAANGIVITDCSLDDNPITFANNGFIEMTGFSEQEIIGRNCRFLQGEHTDDETVLR 1050
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
IR A++ + + NY+K+G PFW ++ V ED THFV +Q + R
Sbjct: 1051 IRRALKRGESVRELIKNYRKNGEPFWNDLYITPVH-DEDNTLTHFVGIQNDVTER 1104
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 56/87 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ D L D P+ +A++ F+++TG+ E++G+NCRFL G TD + +I+ +++ +
Sbjct: 1000 IVITDCSLDDNPITFANNGFIEMTGFSEQEIIGRNCRFLQGEHTDDETVLRIRRALKRGE 1059
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRN 340
+ I NYRK+ FWN L+I+P+ +
Sbjct: 1060 SVRELIKNYRKNGEPFWNDLYITPVHD 1086
>gi|448308948|ref|ZP_21498819.1| PAS/PAC sensor signal transduction histidine kinase [Natronorubrum
bangense JCM 10635]
gi|445592334|gb|ELY46522.1| PAS/PAC sensor signal transduction histidine kinase [Natronorubrum
bangense JCM 10635]
Length = 480
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 64/102 (62%)
Query: 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLY 303
Y ++ + DP D P++Y +D F +LTGY R+E++GQNCRFL G +T +
Sbjct: 17 YQAMDEAPIGITIADPAKLDDPLIYVNDGFCELTGYPRDEILGQNCRFLQGENTREEPVA 76
Query: 304 QIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+++ +I+ E+ TV + NYRKD S FWN + + PI++ SG V
Sbjct: 77 KMRAAIEAEEPVTVELRNYRKDGSMFWNRVTLIPIQSESGTV 118
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
++A+DE P TI DP+ P+++ + GF +++G+ R EI+G+N R QG T +
Sbjct: 17 YQAMDEAPIGITIADPAKLDDPLIYVNDGFCELTGYPRDEILGQNCRFLQGENTREEPVA 76
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
++R AI E P+ V L NY+KDG+ FW + + E G TH++ Q I + K
Sbjct: 77 KMRAAIEAEEPVTVELRNYRKDGSMFWNRVTL-IPIQSESGTVTHYLGYQQDITAEK 132
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 25 DELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84
+E + ITDP + I + + F ++G++ AE GRN R+ + + + E+ E
Sbjct: 146 EEAERAILITDPEGT---IEYVNPAFEHLTGYTAAEARGRNPRILKSGQQDELFYRELWE 202
Query: 85 AIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
I E E L N K G F + K+ + DG THFVA++ I +
Sbjct: 203 TITAEEVWEAELTNRTKHGEIFEVKQKI-VPITDSDGDITHFVAIEQDITEK 253
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 51/132 (38%), Gaps = 8/132 (6%)
Query: 214 VLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAF 273
+THY + KR SL+ L + +LI P+ + Y + AF
Sbjct: 117 TVTHYLGYQQDITAEKRYEK------DLSLFKGLAEEAERAILITD--PEGTIEYVNPAF 168
Query: 274 LKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLL 333
LTGY E G+N R L D ++ E+I E+ + N K F
Sbjct: 169 EHLTGYTAAEARGRNPRILKSGQQDELFYRELWETITAEEVWEAELTNRTKHGEIFEVKQ 228
Query: 334 HISPIRNASGKV 345
I PI ++ G +
Sbjct: 229 KIVPITDSDGDI 240
>gi|381159942|ref|ZP_09869174.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380878006|gb|EIC20098.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 155
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 66/110 (60%)
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G I L L + L DP PD P+VYA++AF +TGY+R E++G+NCRFL G D
Sbjct: 10 GLIPFVLSQILDTVVNGVTLSDPDQPDNPIVYANEAFELITGYEREEIIGRNCRFLQGED 69
Query: 297 TDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ L +I+E + +++ TV + NYRKD S F+N I P+ + G +L
Sbjct: 70 DEQPELARIREGLDKQESVTVTLRNYRKDGSLFYNQFTIRPLFDHEGNLL 119
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ + LD + + T++DP +PIV+A+ F ++G+ R EIIGRN R QG + +
Sbjct: 16 LSQILDTVVNGVTLSDPDQPDNPIVYANEAFELITGYEREEIIGRNCRFLQGEDDEQPEL 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
IRE + ++ + V L NY+KDG+ F+ F + +F E G +++ +Q + +
Sbjct: 76 ARIREGLDKQESVTVTLRNYRKDGSLFYNQFTIRPLFDHE-GNLLYYLGIQYDVTEK 131
>gi|448639826|ref|ZP_21676974.1| HTR-like protein [Haloarcula sinaiiensis ATCC 33800]
gi|445762353|gb|EMA13574.1| HTR-like protein [Haloarcula sinaiiensis ATCC 33800]
Length = 748
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 6/165 (3%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ A+DE P TIT P PI +A+R FL+++G++ +E+ GRN R QG T +
Sbjct: 257 IKRAMDEAPVGITITGPKQEDTPISYANRQFLELTGYTESEVRGRNCRFLQGEETEAEPV 316
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+R AI + P+ V L NY+KDGT FW ++ V +DG ++V Q I RK
Sbjct: 317 DAMRAAIDADEPVSVELRNYRKDGTMFWSQVSIAPVR-DDDGTVVNYVGFQQDITERKEH 375
Query: 140 RNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSD 184
+ SE +++++ R EV + VL L+++
Sbjct: 376 ERRLKALSE-----SVQDLLQADTREEVAEIGVETARTVLGLEAN 415
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 64/107 (59%), Gaps = 7/107 (6%)
Query: 247 LGRIKQSF-------VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
L RIK++ + P D P+ YA+ FL+LTGY +EV G+NCRFL G +T+
Sbjct: 254 LSRIKRAMDEAPVGITITGPKQEDTPISYANRQFLELTGYTESEVRGRNCRFLQGEETEA 313
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ ++ +I ++ +V + NYRKD + FW+ + I+P+R+ G V+
Sbjct: 314 EPVDAMRAAIDADEPVSVELRNYRKDGTMFWSQVSIAPVRDDDGTVV 360
>gi|393763868|ref|ZP_10352481.1| response regulator receiver modulated PAS/PAC sensor-containing
diguanylate cyclase/phosphodiesterase [Alishewanella agri
BL06]
gi|392605182|gb|EIW88080.1| response regulator receiver modulated PAS/PAC sensor-containing
diguanylate cyclase/phosphodiesterase [Alishewanella agri
BL06]
Length = 1590
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 57/91 (62%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
V+ D PDMP+ Y + AF +LTGY +E +G NCRFL G + D + QI+ +I Q
Sbjct: 910 VIADITWPDMPVTYVNYAFERLTGYSSDEAIGHNCRFLQGTERDELAIKQIRHAIAARQE 969
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
C+V + NYRKD S FWN L ++P+ + G +
Sbjct: 970 CSVVLKNYRKDGSIFWNNLFLAPVPDEQGVI 1000
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D I D + P+ + + F +++G+S E IG N R QG + I +I
Sbjct: 901 AVDASSSGVVIADITWPDMPVTYVNYAFERLTGYSSDEAIGHNCRFLQGTERDELAIKQI 960
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
R AI + V L NY+KDG+ FW ++ V E G TH++ +Q I ++K+
Sbjct: 961 RHAIAARQECSVVLKNYRKDGSIFWNNLFLAPV-PDEQGVITHYIGIQTDITAQKN 1015
>gi|409991969|ref|ZP_11275188.1| response regulator receiver modulated diguanylate cyclase
[Arthrospira platensis str. Paraca]
gi|409937163|gb|EKN78608.1| response regulator receiver modulated diguanylate cyclase
[Arthrospira platensis str. Paraca]
Length = 502
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 64/106 (60%)
Query: 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
S L ++ + V+ DP+ PD P++Y + F +LTGY +E++G NCRFL G + D
Sbjct: 166 SKLLEKAIAATQNGVVITDPNQPDNPIIYVNFGFERLTGYPAHEILGSNCRFLQGNERDQ 225
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
L I+ +I + C V + NYR+D + FWN L ISP+RN G++
Sbjct: 226 PALDDIRRAIAEAEECRVILKNYRRDGTMFWNELFISPVRNEQGEL 271
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Query: 3 SQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEII 62
SQ+ L ++ + + +A+ + ITDP+ +PI++ + GF +++G+ EI+
Sbjct: 152 SQIYLHDRQVAEATSKLLEKAIAATQNGVVITDPNQPDNPIIYVNFGFERLTGYPAHEIL 211
Query: 63 GRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGR 122
G N R QG ++ + +IR AI E V L NY++DGT FW +S V E G
Sbjct: 212 GSNCRFLQGNERDQPALDDIRRAIAEAEECRVILKNYRRDGTMFWNELFISPV-RNEQGE 270
Query: 123 ATHFVAVQVPIVSRK 137
T+F+ +Q + RK
Sbjct: 271 LTNFIGIQTDVTERK 285
>gi|448667509|ref|ZP_21686009.1| HTR-like protein [Haloarcula amylolytica JCM 13557]
gi|445770077|gb|EMA21145.1| HTR-like protein [Haloarcula amylolytica JCM 13557]
Length = 727
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 69/115 (60%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P ITDP + +P+++A+ + ++G+S E++G+N RM QG T+ ++ +
Sbjct: 276 AIDEAPVGVVITDPGQTDNPLIYANDHYRDLTGYSLPELLGKNCRMLQGENTDPESVATM 335
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R+AI E + V L NY+KDGT FW +++ V +DG ++V Q I RK
Sbjct: 336 RDAIDAEERVTVELRNYRKDGTEFWNRVRIAPVRDDDDGTVVNYVGFQQDITERK 390
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 57/86 (66%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
V+ DP D P++YA+D + LTGY E++G+NCR L G +TD + ++++I E+
Sbjct: 285 VITDPGQTDNPLIYANDHYRDLTGYSLPELLGKNCRMLQGENTDPESVATMRDAIDAEER 344
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRN 340
TV + NYRKD + FWN + I+P+R+
Sbjct: 345 VTVELRNYRKDGTEFWNRVRIAPVRD 370
>gi|108805704|ref|YP_645641.1| putative PAS/PAC sensor protein [Rubrobacter xylanophilus DSM 9941]
gi|108766947|gb|ABG05829.1| putative PAS/PAC sensor protein [Rubrobacter xylanophilus DSM 9941]
Length = 581
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 61/94 (64%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
V+ DP+LPD P++Y + AF ++TGY R EVVG+NCRFL D L +++++
Sbjct: 36 GIVITDPNLPDNPIIYVNPAFERITGYSRREVVGRNCRFLQREDRGQAELEVLRQAMAER 95
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ C V + NYR+D FWN L++SP+ + G+++
Sbjct: 96 RDCRVVLRNYRRDGRMFWNELYVSPVYDEDGRLV 129
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
ITDP++ +PI++ + F +++G+SR E++GRN R Q + + +R+A+ E
Sbjct: 36 GIVITDPNLPDNPIIYVNPAFERITGYSRREVVGRNCRFLQREDRGQAELEVLRQAMAER 95
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
R V L NY++DG FW +S V+ EDGR +F+ VQ I RK M
Sbjct: 96 RDCRVVLRNYRRDGRMFWNELYVSPVY-DEDGRLVNFIGVQNDITERKRM 144
>gi|407977776|ref|ZP_11158612.1| hypothetical protein BA1_01205 [Bacillus sp. HYC-10]
gi|407415638|gb|EKF37226.1| hypothetical protein BA1_01205 [Bacillus sp. HYC-10]
Length = 262
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 61/93 (65%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + + DP LPD P++Y + FL +TGY EV+G+NCRFL G +T+ VL Q+
Sbjct: 17 ALDYTQVGLTVTDPSLPDNPLIYVNKGFLDMTGYQETEVLGKNCRFLQGDETEQIVLKQM 76
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
+ +I+ ++A TV++ NY+K FWN L ++P+
Sbjct: 77 RAAIENKEAVTVQLKNYKKSGQMFWNELSVAPL 109
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
Query: 10 QSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMF 69
+S+ + + EALD T+TDPS+ +P+++ ++GFL M+G+ E++G+N R
Sbjct: 4 ESYKSENLHLIKEALDYTQVGLTVTDPSLPDNPLIYVNKGFLDMTGYQETEVLGKNCRFL 63
Query: 70 QGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMS-LVFGKEDGRATHFVA 128
QG T + + ++R AI + + V L NYKK G FW ++ L + +G+ +FV
Sbjct: 64 QGDETEQIVLKQMRAAIENKEAVTVQLKNYKKSGQMFWNELSVAPLWIDENEGKRLYFVG 123
Query: 129 VQVPIVSRKHMR 140
+Q + K +
Sbjct: 124 LQKDVTKEKEQQ 135
>gi|284166481|ref|YP_003404760.1| multi-sensor signal transduction histidine kinase [Haloterrigena
turkmenica DSM 5511]
gi|284016136|gb|ADB62087.1| multi-sensor signal transduction histidine kinase [Haloterrigena
turkmenica DSM 5511]
Length = 654
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 60/92 (65%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
L D PD P+VYA+D F +LTGY R E++G+NCRFL G T T + ++ +I E+
Sbjct: 331 ITLSDATRPDNPLVYANDQFERLTGYAREEILGRNCRFLQGERTATEPVDDLRAAIDAER 390
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ TV + NYRKD S FWN + ++P+ + +G V
Sbjct: 391 SNTVELRNYRKDGSEFWNRVTVAPVADENGDV 422
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
+DE P T++D + +P+V+A+ F +++G++R EI+GRN R QG RT + ++R
Sbjct: 324 IDEAPIGITLSDATRPDNPLVYANDQFERLTGYAREEILGRNCRFLQGERTATEPVDDLR 383
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
AI ER V L NY+KDG+ FW ++ V E+G T++V Q + RK
Sbjct: 384 AAIDAERSNTVELRNYRKDGSEFWNRVTVAPV-ADENGDVTNYVGFQQDVTERK 436
>gi|375110486|ref|ZP_09756708.1| response regulator receiver modulated PAS/PAC sensor-containing
diguanylate cyclase/phosphodiesterase [Alishewanella
jeotgali KCTC 22429]
gi|374569430|gb|EHR40591.1| response regulator receiver modulated PAS/PAC sensor-containing
diguanylate cyclase/phosphodiesterase [Alishewanella
jeotgali KCTC 22429]
Length = 1590
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 58/91 (63%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
V+ D PDMP+ Y + AF +LTGY +EV+G NC+FL G + D + QI+ +I Q
Sbjct: 910 VIADITWPDMPVTYVNYAFERLTGYSSDEVIGHNCKFLQGTERDELAIQQIRNAIAERQE 969
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
C+V + NYRKD S FWN L ++P+ + G +
Sbjct: 970 CSVVLKNYRKDGSIFWNNLFLAPVPDEQGVI 1000
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D I D + P+ + + F +++G+S E+IG N + QG + I +I
Sbjct: 901 AVDASSSGVVIADITWPDMPVTYVNYAFERLTGYSSDEVIGHNCKFLQGTERDELAIQQI 960
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
R AI E + V L NY+KDG+ FW ++ V E G TH++ +Q I ++K+
Sbjct: 961 RNAIAERQECSVVLKNYRKDGSIFWNNLFLAPV-PDEQGVITHYIGIQTDITAQKN 1015
>gi|352100624|ref|ZP_08958211.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Halomonas sp. HAL1]
gi|350601044|gb|EHA17099.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Halomonas sp. HAL1]
Length = 927
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 60/91 (65%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
+++D +PMVY + AF ++TGY R+E +G+NCRFL G DTD + ++E + +
Sbjct: 382 IIVDAQSSALPMVYVNAAFERITGYSRSEALGRNCRFLQGEDTDPATVKLLREGVTEQHE 441
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
V I NYR+D S FWN L+ISP+R+ +G V
Sbjct: 442 VHVVIRNYRRDGSIFWNDLYISPVRDETGDV 472
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 67/117 (57%), Gaps = 2/117 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
I D S P+V+ + F +++G+SR+E +GRN R QG T+ T+ +RE + E+ +
Sbjct: 383 IVDAQSSALPMVYVNAAFERITGYSRSEALGRNCRFLQGEDTDPATVKLLREGVTEQHEV 442
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSED 149
V + NY++DG+ FW +S V E G TH++ VQ VS + + ++Y+ +
Sbjct: 443 HVVIRNYRRDGSIFWNDLYISPV-RDETGDVTHYLGVQND-VSEQREYQAQLTYNAN 497
>gi|408387827|gb|EKJ67533.1| hypothetical protein FPSE_12294 [Fusarium pseudograminearum CS3096]
Length = 656
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 59/96 (61%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+K SF L DP P+V+ASD F +LTGY R EV+ NCRFL G TD + ++ +I
Sbjct: 285 LKGSFCLSDPSRSGNPIVFASDEFEELTGYSRTEVLAHNCRFLQGPQTDRDRIANMRSAI 344
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
CT +LN+RKD + FWNLL + P+ + +GK
Sbjct: 345 WRNDECTELLLNFRKDGTPFWNLLFLCPLLDKTGKT 380
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L SF ++DPS SG+PIVFAS F +++G+SR E++ N R QGP+T+R I +R AI
Sbjct: 285 LKGSFCLSDPSRSGNPIVFASDEFEELTGYSRTEVLAHNCRFLQGPQTDRDRIANMRSAI 344
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
LLN++KDGTPFW L + + K G+ F+ Q+ + S H
Sbjct: 345 WRNDECTELLLNFRKDGTPFWNLLFLCPLLDKT-GKTKFFMGAQIDVSSSIH 395
>gi|429192923|ref|YP_007178601.1| PAS domain-containing protein [Natronobacterium gregoryi SP2]
gi|448326770|ref|ZP_21516114.1| bacterio-opsin activator [Natronobacterium gregoryi SP2]
gi|429137141|gb|AFZ74152.1| PAS domain S-box [Natronobacterium gregoryi SP2]
gi|445609821|gb|ELY63607.1| bacterio-opsin activator [Natronobacterium gregoryi SP2]
Length = 662
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D+ P +++DPS+ +P V+ + + +++GF RA I+GRN R+ QGP T+ +
Sbjct: 140 AIDDAPIGISLSDPSLPDNPTVYVNDAWEEITGFDRASILGRNPRILQGPATDPEIKSAL 199
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
EA+ E+P+ V + NY+ DGTP+W ++ V+ + D H+V Q + RK
Sbjct: 200 SEAVDAEQPVTVEIKNYRPDGTPWWNELSIAPVYDESDD-PVHYVGFQKDVTDRK 253
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 55/87 (63%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315
L DP LPD P VY +DA+ ++TG+DR ++G+N R L G TD + + E++ EQ
Sbjct: 150 LSDPSLPDNPTVYVNDAWEEITGFDRASILGRNPRILQGPATDPEIKSALSEAVDAEQPV 209
Query: 316 TVRILNYRKDKSSFWNLLHISPIRNAS 342
TV I NYR D + +WN L I+P+ + S
Sbjct: 210 TVEIKNYRPDGTPWWNELSIAPVYDES 236
>gi|300711248|ref|YP_003737062.1| bacterio-opsin activator [Halalkalicoccus jeotgali B3]
gi|448296650|ref|ZP_21486704.1| bacterio-opsin activator [Halalkalicoccus jeotgali B3]
gi|299124931|gb|ADJ15270.1| bacterio-opsin activator [Halalkalicoccus jeotgali B3]
gi|445580943|gb|ELY35309.1| bacterio-opsin activator [Halalkalicoccus jeotgali B3]
Length = 531
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 64/118 (54%), Gaps = 2/118 (1%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ A+DE P TI D + P+++ + F +++G+ E +G N R QG RT +
Sbjct: 7 IERAIDEAPIGITIADATREDDPLIYINDAFERLTGYPPEETLGTNCRFLQGERTAAEPV 66
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+REAI E P V L NY+KDGT FW K+ + EDG THFV Q + +RK
Sbjct: 67 ATMREAIEAEEPTSVELRNYRKDGTEFWN--KVDIAPIHEDGDVTHFVGFQTDVTARK 122
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ D D P++Y +DAF +LTGY E +G NCRFL G T + ++E+I+ E+
Sbjct: 18 ITIADATREDDPLIYINDAFERLTGYPPEETLGTNCRFLQGERTAAEPVATMREAIEAEE 77
Query: 314 ACTVRILNYRKDKSSFWNLLHISPI 338
+V + NYRKD + FWN + I+PI
Sbjct: 78 PTSVELRNYRKDGTEFWNKVDIAPI 102
>gi|224008813|ref|XP_002293365.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220970765|gb|EED89101.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 113
Score = 93.2 bits (230), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/111 (40%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +F I+DPS+ +PIV+ S+GFL ++G++ +++GRN R QGP T++ + I
Sbjct: 3 ALSGSQQNFAISDPSLPDNPIVYVSQGFLDLTGYTLDQVLGRNCRFLQGPGTDQAAVDVI 62
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R+ +RE V LLNYK DGTPFW F ++ + E+ +FV VQ +
Sbjct: 63 RKGVREGVDTSVCLLNYKADGTPFWNQFFVAALRDAEN-NVVNFVGVQCEV 112
Score = 90.1 bits (222), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/101 (39%), Positives = 63/101 (62%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L +Q+F + DP LPD P+VY S FL LTGY ++V+G+NCRFL G TD + I
Sbjct: 3 ALSGSQQNFAISDPSLPDNPIVYVSQGFLDLTGYTLDQVLGRNCRFLQGPGTDQAAVDVI 62
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
++ ++ +V +LNY+ D + FWN ++ +R+A V+
Sbjct: 63 RKGVREGVDTSVCLLNYKADGTPFWNQFFVAALRDAENNVV 103
>gi|354569046|ref|ZP_08988205.1| multi-sensor signal transduction histidine kinase [Fischerella sp.
JSC-11]
gi|353539050|gb|EHC08546.1| multi-sensor signal transduction histidine kinase [Fischerella sp.
JSC-11]
Length = 1039
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
Query: 224 RLVCGKRCSLPGMGFISSSLYI---SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYD 280
R +CG + ++L + ++ V+ D LP++P++YA+ AF +TGY
Sbjct: 530 RAICGISTDITDRKRAEANLLLRDRAIAASSNGIVICDARLPNLPIIYANPAFEYITGYS 589
Query: 281 RNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRN 340
EV+G+N RFL G DT+ + +++ +IQ + CTV + NYRKD S FWN L ISP+ +
Sbjct: 590 PEEVIGRNFRFLQGNDTNQPEIQELRNAIQQAKNCTVILRNYRKDGSLFWNELSISPVFD 649
Query: 341 ASG 343
A G
Sbjct: 650 ADG 652
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+ I D + PI++A+ F ++G+S E+IGRN R QG TN+ I E+R AI++
Sbjct: 561 NGIVICDARLPNLPIIYANPAFEYITGYSPEEVIGRNFRFLQGNDTNQPEIQELRNAIQQ 620
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGM 144
+ V L NY+KDG+ FW +S VF DG TH+V +Q I RK + M
Sbjct: 621 AKNCTVILRNYRKDGSLFWNELSISPVFDA-DGNCTHYVGIQNDITERKQSEMALM 675
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 58/99 (58%), Gaps = 1/99 (1%)
Query: 40 GHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNY 99
G IV+ + F ++SG+S AE++G+ R+ QG ++R + IR A++ P+ L+NY
Sbjct: 184 GPQIVYVNEAFTRISGWSSAEVVGKTPRILQGELSDRTQLDRIRTALQNCLPVRAELINY 243
Query: 100 KKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
K+G+ +W+ + + G+ THFV++Q I +K
Sbjct: 244 HKNGSTYWVEINI-VPIADAQGKITHFVSIQRDITEQKQ 281
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 50/80 (62%)
Query: 266 MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKD 325
+VY ++AF +++G+ EVVG+ R L G +D T L +I+ ++Q ++NY K+
Sbjct: 187 IVYVNEAFTRISGWSSAEVVGKTPRILQGELSDRTQLDRIRTALQNCLPVRAELINYHKN 246
Query: 326 KSSFWNLLHISPIRNASGKV 345
S++W ++I PI +A GK+
Sbjct: 247 GSTYWVEINIVPIADAQGKI 266
>gi|209963693|ref|YP_002296608.1| multi-sensor hybrid histidine kinase [Rhodospirillum centenum SW]
gi|209957159|gb|ACI97795.1| multi-sensor hybrid histidine kinase, putative [Rhodospirillum
centenum SW]
Length = 368
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 60/93 (64%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
S + D PD P++Y + F LTGYDR EV+G+NCRFL+G TD + + E+I+T
Sbjct: 17 SIAVADARRPDTPLIYVNRIFQTLTGYDRAEVMGRNCRFLHGPGTDDAAVGVLHEAIRTG 76
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
VR+LNYRKD S+F N L ++PI + +G +
Sbjct: 77 SRADVRLLNYRKDGSTFLNHLVLAPIHDETGTL 109
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
+D P S + D P+++ +R F ++G+ RAE++GRN R GP T+ + +
Sbjct: 11 IDACPISIAVADARRPDTPLIYVNRIFQTLTGYDRAEVMGRNCRFLHGPGTDDAAVGVLH 70
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
EAIR +V LLNY+KDG+ F ++ + E G + ++ +Q
Sbjct: 71 EAIRTGSRADVRLLNYRKDGSTFLNHLVLAPIH-DETGTLSAYIGLQ 116
>gi|431930291|ref|YP_007243337.1| PAS domain-containing protein [Thioflavicoccus mobilis 8321]
gi|431828594|gb|AGA89707.1| PAS domain S-box [Thioflavicoccus mobilis 8321]
Length = 155
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 63/91 (69%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315
L DP LPD P+VYA++AF +TGYDR E++G+NCRFL G + + + +I+E++ E+
Sbjct: 29 LSDPDLPDNPIVYANEAFELITGYDREEILGRNCRFLQGEEQEQPEVERIREALSEERPV 88
Query: 316 TVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
TV + NYRKD + F+N I P+ + G+++
Sbjct: 89 TVTLRNYRKDGTLFYNQFTIRPLFDPQGRLI 119
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ + LD + T++DP + +PIV+A+ F ++G+ R EI+GRN R QG + +
Sbjct: 16 LSQILDTCVNGITLSDPDLPDNPIVYANEAFELITGYDREEILGRNCRFLQGEEQEQPEV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
IREA+ EERP+ V L NY+KDGT F+ F + +F + GR +++ VQ + +
Sbjct: 76 ERIREALSEERPVTVTLRNYRKDGTLFYNQFTIRPLFDPQ-GRLIYYLGVQYDVTEKVRA 134
Query: 140 RNS 142
R
Sbjct: 135 REE 137
>gi|326802470|ref|YP_004320289.1| PAS/PAC sensor signal transduction histidine kinase
[Sphingobacterium sp. 21]
gi|326553234|gb|ADZ81619.1| PAS/PAC sensor signal transduction histidine kinase
[Sphingobacterium sp. 21]
Length = 520
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 56/95 (58%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
K V+ D PD P+VY + AF +LTGY RNEV+G NCRFL G D + IK ++
Sbjct: 31 KVGVVITDCSQPDYPIVYCNKAFEELTGYSRNEVIGHNCRFLQGNDDNEEQKKVIKTALH 90
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
Q C + I NY+KD S FWN L + PIR+ V
Sbjct: 91 LGQPCEIEIKNYKKDGSLFWNQLRLQPIRDEENNV 125
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITD S +PIV+ ++ F +++G+SR E+IG N R QG N I+ A+ +P
Sbjct: 36 ITDCSQPDYPIVYCNKAFEELTGYSRNEVIGHNCRFLQGNDDNEEQKKVIKTALHLGQPC 95
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
E+ + NYKKDG+ FW ++ + E+ T+++ VQ
Sbjct: 96 EIEIKNYKKDGSLFWNQLRLQPI-RDEENNVTYYIGVQ 132
>gi|448299045|ref|ZP_21489058.1| bacterio-opsin activator [Natronorubrum tibetense GA33]
gi|445588579|gb|ELY42821.1| bacterio-opsin activator [Natronorubrum tibetense GA33]
Length = 646
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 61/92 (66%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ DP L D P+VY +DA+ ++TGYD ++V+G+NCRFL G D+ + ++ +I +
Sbjct: 152 ITISDPDLEDNPLVYVNDAYEEMTGYDYDDVIGRNCRFLQGEDSSEAAVAEMAAAIDEDY 211
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV I NYRKD + FWN + I+P+R+ +G V
Sbjct: 212 PVTVEIKNYRKDGTEFWNEVTIAPVRDEAGTV 243
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P TI+DP + +P+V+ + + +M+G+ ++IGRN R QG ++ + E+
Sbjct: 144 AINEAPVGITISDPDLEDNPLVYVNDAYEEMTGYDYDDVIGRNCRFLQGEDSSEAAVAEM 203
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
AI E+ P+ V + NY+KDGT FW ++ V E G TH++ Q I +RK
Sbjct: 204 AAAIDEDYPVTVEIKNYRKDGTEFWNEVTIAPVR-DEAGTVTHYIGFQNDITARKE 258
>gi|389572311|ref|ZP_10162396.1| ytvA [Bacillus sp. M 2-6]
gi|388427892|gb|EIL85692.1| ytvA [Bacillus sp. M 2-6]
Length = 262
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 60/93 (64%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + + DP LPD P++Y + FL +TGY EV+G+NCRFL G +T+ L QI
Sbjct: 17 ALDYTQVGLTVTDPSLPDNPLIYVNKGFLDMTGYQETEVLGKNCRFLQGDETEQIALKQI 76
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
+ +I+ ++A TV++ NY+K FWN L ++P+
Sbjct: 77 RAAIEKKEAVTVQLKNYKKSGQMFWNELSVAPL 109
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ EALD T+TDPS+ +P+++ ++GFL M+G+ E++G+N R QG T + +
Sbjct: 14 IKEALDYTQVGLTVTDPSLPDNPLIYVNKGFLDMTGYQETEVLGKNCRFLQGDETEQIAL 73
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMS-LVFGKEDGRATHFVAVQVPIVSRKH 138
+IR AI ++ + V L NYKK G FW ++ L + +G+ +FV +Q + K
Sbjct: 74 KQIRAAIEKKEAVTVQLKNYKKSGQMFWNELSVAPLWIDENEGKRLYFVGLQKDVTKEKE 133
Query: 139 MR 140
+
Sbjct: 134 QQ 135
>gi|407978580|ref|ZP_11159410.1| hypothetical protein BA1_05237 [Bacillus sp. HYC-10]
gi|407414949|gb|EKF36570.1| hypothetical protein BA1_05237 [Bacillus sp. HYC-10]
Length = 279
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD ITDPS+ +PIV+ + GF +M+G+ EI+GRN R QG T++ +
Sbjct: 16 IKKALDHARIGVVITDPSLEDNPIVYVNHGFTQMTGYKPDEILGRNCRFLQGKDTDQEQL 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR I+ + PI L NYKKDGT FW + ++ ++D + T FV Q I +K
Sbjct: 76 ALIRHGIQHKTPITTQLKNYKKDGTFFWNELNIDPLYIEQDDK-TFFVGFQKDITKQKE 133
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + V+ DP L D P+VY + F ++TGY +E++G+NCRFL G DTD L I
Sbjct: 19 ALDHARIGVVITDPSLEDNPIVYVNHGFTQMTGYKPDEILGRNCRFLQGKDTDQEQLALI 78
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
+ IQ + T ++ NY+KD + FWN L+I P+
Sbjct: 79 RHGIQHKTPITTQLKNYKKDGTFFWNELNIDPL 111
>gi|398307975|ref|ZP_10511449.1| sensory box protein [Bacillus mojavensis RO-H-1]
Length = 261
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 61/94 (64%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + V+ DP L D P+VY + F+++TGY+ E++G+NCRFL G DTD + I
Sbjct: 19 ALDHARVGVVITDPALEDNPIVYVNQGFVQMTGYEAEEILGKNCRFLQGKDTDAGEVDNI 78
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIR 339
+ +Q ++ TV+I NY+KD + FWN L+I P+
Sbjct: 79 RAGLQNKEPVTVQIQNYKKDGTMFWNELNIDPLE 112
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 73/130 (56%), Gaps = 4/130 (3%)
Query: 10 QSFNNRYTL-WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
QSF + L + +ALD ITDP++ +PIV+ ++GF++M+G+ EI+G+N R
Sbjct: 5 QSFGIKGQLDVIKKALDHARVGVVITDPALEDNPIVYVNQGFVQMTGYEAEEILGKNCRF 64
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QG T+ + IR ++ + P+ V + NYKKDGT FW + + E T+FV
Sbjct: 65 LQGKDTDAGEVDNIRAGLQNKEPVTVQIQNYKKDGTMFWNELNIDPL---EIEDKTYFVG 121
Query: 129 VQVPIVSRKH 138
+Q I +K
Sbjct: 122 IQKDITKQKE 131
>gi|334117232|ref|ZP_08491324.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Microcoleus vaginatus FGP-2]
gi|333462052|gb|EGK90657.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Microcoleus vaginatus FGP-2]
Length = 1024
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 72/122 (59%), Gaps = 4/122 (3%)
Query: 17 TLWVHE-ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTN 75
LW+ + AL I D + PI++ + F +M+G+ +EI+GRN R QGP T+
Sbjct: 49 ALWLCDRALAATSSGIVIADANAPDCPIIYCNPAFERMTGYCASEILGRNCRFLQGPDTD 108
Query: 76 RRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIV 134
R T+ IR+A+R+ R I+ + NY+KDG+PFW K+SL ++D THFV +Q +
Sbjct: 109 RTTVANIRDALRQGREIQTTIKNYRKDGSPFWS--KLSLSPVRDDSANLTHFVGIQSDLS 166
Query: 135 SR 136
R
Sbjct: 167 ER 168
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 63/100 (63%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L V+ D + PD P++Y + AF ++TGY +E++G+NCRFL G DTD T + I
Sbjct: 56 ALAATSSGIVIADANAPDCPIIYCNPAFERMTGYCASEILGRNCRFLQGPDTDRTTVANI 115
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+++++ + I NYRKD S FW+ L +SP+R+ S +
Sbjct: 116 RDALRQGREIQTTIKNYRKDGSPFWSKLSLSPVRDDSANL 155
>gi|428319523|ref|YP_007117405.1| PAS/PAC sensor signal transduction histidine kinase [Oscillatoria
nigro-viridis PCC 7112]
gi|428243203|gb|AFZ08989.1| PAS/PAC sensor signal transduction histidine kinase [Oscillatoria
nigro-viridis PCC 7112]
Length = 630
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 57/84 (67%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILN 321
PD P++Y + AF +TGY R E++G+N RFL+G DTD + I++++Q E C V + N
Sbjct: 227 PDNPIIYCNPAFESMTGYRRQEIIGKNGRFLHGSDTDPAAVEIIRQALQAESECKVILKN 286
Query: 322 YRKDKSSFWNLLHISPIRNASGKV 345
YRKD ++FWN ISP+R+ G +
Sbjct: 287 YRKDGTAFWNCFSISPVRDRMGNL 310
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 70/122 (57%), Gaps = 2/122 (1%)
Query: 18 LWVHE-ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNR 76
LW+++ A+ TI+D + +PI++ + F M+G+ R EIIG+NGR G T+
Sbjct: 205 LWLYDRAIAATSTGVTISDATDPDNPIIYCNPAFESMTGYRRQEIIGKNGRFLHGSDTDP 264
Query: 77 RTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+ IR+A++ E +V L NY+KDGT FW F +S V + G THF+ VQ I R
Sbjct: 265 AAVEIIRQALQAESECKVILKNYRKDGTAFWNCFSISPVRDRM-GNLTHFIGVQRDITQR 323
Query: 137 KH 138
K
Sbjct: 324 KQ 325
>gi|389572124|ref|ZP_10162211.1| ytvA [Bacillus sp. M 2-6]
gi|388428148|gb|EIL85946.1| ytvA [Bacillus sp. M 2-6]
Length = 267
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD ITDPS+ +PIV+ + GF +M+G+ EI+GRN R QG TN+ +
Sbjct: 16 IKKALDHARIGVVITDPSLEDNPIVYVNHGFTQMTGYKPDEILGRNCRFLQGKDTNQEQL 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR I+ + PI L NYKKDGT FW + ++ ++D + T F+ Q I +K
Sbjct: 76 DLIRHGIQNKTPITTQLKNYKKDGTFFWNELNIDPLYIEQDDK-TFFIGFQKDITKQKE 133
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 58/93 (62%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + V+ DP L D P+VY + F ++TGY +E++G+NCRFL G DT+ L I
Sbjct: 19 ALDHARIGVVITDPSLEDNPIVYVNHGFTQMTGYKPDEILGRNCRFLQGKDTNQEQLDLI 78
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
+ IQ + T ++ NY+KD + FWN L+I P+
Sbjct: 79 RHGIQNKTPITTQLKNYKKDGTFFWNELNIDPL 111
>gi|448503538|ref|ZP_21613167.1| bacterio-opsin activator [Halorubrum coriense DSM 10284]
gi|445691739|gb|ELZ43922.1| bacterio-opsin activator [Halorubrum coriense DSM 10284]
Length = 668
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V A+++ P +I+DP +S +P+V+ + + +G+ E +GRN R QGP T+ T+
Sbjct: 144 VTRAVEDAPIGISISDPDLSDYPLVYVNDAWEDHTGYPVEEALGRNPRFLQGPGTDPETV 203
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
EI EA+ E + V + NY++DGTPFW ++ ++ EDG H+V Q + RK
Sbjct: 204 EEIAEALGNEEEVTVEIRNYRRDGTPFWNELTVAPIY-DEDGGLAHYVGFQNDVSERKEA 262
Query: 140 RNSGMSYSE 148
+E
Sbjct: 263 ERLAQERAE 271
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 53/86 (61%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTV 317
DP L D P+VY +DA+ TGY E +G+N RFL G TD + +I E++ E+ TV
Sbjct: 159 DPDLSDYPLVYVNDAWEDHTGYPVEEALGRNPRFLQGPGTDPETVEEIAEALGNEEEVTV 218
Query: 318 RILNYRKDKSSFWNLLHISPIRNASG 343
I NYR+D + FWN L ++PI + G
Sbjct: 219 EIRNYRRDGTPFWNELTVAPIYDEDG 244
>gi|75907252|ref|YP_321548.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
29413]
gi|75700977|gb|ABA20653.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
29413]
Length = 1820
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 63/100 (63%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L V+ D LP+ P++Y + AF ++TGY E+VG+NCRFL G DT + ++
Sbjct: 446 ALAASSNGIVISDAKLPNYPVIYVNSAFEQITGYKATEIVGRNCRFLQGNDTTQPAIEEL 505
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +++ + C V + NYRKD S FWN L +SPI N +G++
Sbjct: 506 RSALKAGKNCKVILRNYRKDGSLFWNQLSVSPIYNDNGQL 545
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 86/173 (49%), Gaps = 18/173 (10%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL + I+D + +P+++ + F +++G+ EI+GRN R QG T + I E+
Sbjct: 446 ALAASSNGIVISDAKLPNYPVIYVNSAFEQITGYKATEIVGRNCRFLQGNDTTQPAIEEL 505
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH---- 138
R A++ + +V L NY+KDG+ FW +S ++ ++G+ +HF+ +Q I R+
Sbjct: 506 RSALKAGKNCKVILRNYRKDGSLFWNQLSVSPIYN-DNGQLSHFIGIQTDISDRQQAEAS 564
Query: 139 MRNSGMSYSEDGGG-------------SRLREIVFGSCRREVCSDSLLDLDRV 178
+R +++ G + E +FG + +C S+ L +V
Sbjct: 565 LRRQALTFENIYDGVIITNLQGQILDWNPAAERMFGYSKDHICGQSISILHKV 617
>gi|406831765|ref|ZP_11091359.1| multi-sensor hybrid histidine kinase [Schlesneria paludicola DSM
18645]
Length = 819
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 56/87 (64%)
Query: 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQT 311
Q V+ DP D P++YAS F +LTGY E+VG+NCR L G TD + +I+E++
Sbjct: 326 QGIVITDPRRNDNPIIYASPGFERLTGYTAKELVGKNCRMLQGELTDPAAVARIREAVHA 385
Query: 312 EQACTVRILNYRKDKSSFWNLLHISPI 338
Q CTV ++NYRK+ SFWN L +S +
Sbjct: 386 GQGCTVELVNYRKNGKSFWNHLALSAV 412
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+ ITDP + +PI++AS GF +++G++ E++G+N RM QG T+ + I
Sbjct: 320 AIRAASQGIVITDPRRNDNPIIYASPGFERLTGYTAKELVGKNCRMLQGELTDPAAVARI 379
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
REA+ + V L+NY+K+G FW +S VF E+ + +FV VQ + R+ +
Sbjct: 380 REAVHAGQGCTVELVNYRKNGKSFWNHLALSAVF-DENQQLVNFVGVQTDVTERRSL 435
>gi|398305804|ref|ZP_10509390.1| sensory box protein [Bacillus vallismortis DV1-F-3]
Length = 261
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 61/94 (64%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + V+ DP L D P+VY + F+++TGY+ E++G+NCRFL G TD + I
Sbjct: 19 ALDHARVGVVITDPALEDNPIVYVNQGFVQMTGYEAEEILGKNCRFLQGKHTDPAEVKNI 78
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIR 339
K ++Q ++ TV+I NY+KD + FWN L+I P+
Sbjct: 79 KTALQNKEPVTVQIQNYKKDGTMFWNELNIDPLE 112
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 4/130 (3%)
Query: 10 QSFNNRYTLWV-HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
QSF + L V +ALD ITDP++ +PIV+ ++GF++M+G+ EI+G+N R
Sbjct: 5 QSFGIQGQLEVIKKALDHARVGVVITDPALEDNPIVYVNQGFVQMTGYEAEEILGKNCRF 64
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QG T+ + I+ A++ + P+ V + NYKKDGT FW + + E T+FV
Sbjct: 65 LQGKHTDPAEVKNIKTALQNKEPVTVQIQNYKKDGTMFWNELNIDPL---EIEGKTYFVG 121
Query: 129 VQVPIVSRKH 138
+Q I +K
Sbjct: 122 IQKDITRQKE 131
>gi|429854006|gb|ELA29042.1| hypothetical protein CGGC5_1230 [Colletotrichum gloeosporioides
Nara gc5]
Length = 638
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 65/102 (63%), Gaps = 3/102 (2%)
Query: 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLY 303
Y LG +SF L D P+ P+V ASDAF+ LTG+ + E + +NCRFL G TD +
Sbjct: 262 YPGLG---ESFCLTDALNPENPIVAASDAFVSLTGFSKIEALPRNCRFLQGGLTDQDTIK 318
Query: 304 QIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+E++ E+ ILNYR+D + FWNLL P+ ++SGKV
Sbjct: 319 RIREAVVQEEESLELILNYRRDGTPFWNLLFTCPLTDSSGKV 360
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 5/107 (4%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L +SF +TD +PIV AS F+ ++GFS+ E + RN R QG T++ TI IREA+
Sbjct: 265 LGESFCLTDALNPENPIVAASDAFVSLTGFSKIEALPRNCRFLQGGLTDQDTIKRIREAV 324
Query: 87 -REERPIEVNLLNYKKDGTPFW-MLFKMSLVFGKEDGRATHFVAVQV 131
+EE +E+ +LNY++DGTPFW +LF L G+ +++ QV
Sbjct: 325 VQEEESLEL-ILNYRRDGTPFWNLLFTCPLT--DSSGKVRYYLGGQV 368
>gi|170749428|ref|YP_001755688.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
radiotolerans JCM 2831]
gi|170655950|gb|ACB25005.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
radiotolerans JCM 2831]
Length = 812
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 76/117 (64%), Gaps = 1/117 (0%)
Query: 231 CSLPGMGFISSSL-YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNC 289
SL G+G S L + + + + + ++ DP+LPD P+V+A+ AFL+L+GY E++G+NC
Sbjct: 38 TSLAGVGTARSDLLFTAADKTRMAMIVTDPNLPDNPIVFANRAFLELSGYTAEELIGRNC 97
Query: 290 RFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
RFL G TD + +++ +I + V +LNYR+D S+F N L+ISP+ G++L
Sbjct: 98 RFLQGPATDPADIARVRAAIAARRDVVVELLNYRRDGSTFVNELYISPVFGPHGELL 154
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 61/95 (64%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A D+ + +TDP++ +PIVFA+R FL++SG++ E+IGRN R QGP T+ I +
Sbjct: 54 AADKTRMAMIVTDPNLPDNPIVFANRAFLELSGYTAEELIGRNCRFLQGPATDPADIARV 113
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFG 117
R AI R + V LLNY++DG+ F +S VFG
Sbjct: 114 RAAIAARRDVVVELLNYRRDGSTFVNELYISPVFG 148
>gi|428172074|gb|EKX40986.1| hypothetical protein GUITHDRAFT_39483, partial [Guillardia theta
CCMP2712]
Length = 98
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 60/88 (68%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTV 317
D +P MP+V+AS+ F K+TGY+ E++G + L G D+D T + I+E+++T QA +
Sbjct: 3 DASVPGMPIVFASEGFFKMTGYEPAEILGHSLEKLYGADSDPTTVAMIREAMETHQAVST 62
Query: 318 RILNYRKDKSSFWNLLHISPIRNASGKV 345
ILNYRKD SFWN L + P+ ++SG +
Sbjct: 63 CILNYRKDGRSFWNHLSLQPVSDSSGSL 90
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
I+D S+ G PIVFAS GF KM+G+ AEI+G + G ++ T+ IREA+ + +
Sbjct: 1 ISDASVPGMPIVFASEGFFKMTGYEPAEILGHSLEKLYGADSDPTTVAMIREAMETHQAV 60
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+LNY+KDG FW + V G ++VA QV
Sbjct: 61 STCILNYRKDGRSFWNHLSLQPV-SDSSGSLRYYVATQV 98
>gi|157694031|ref|YP_001488493.1| hypothetical protein BPUM_3280 [Bacillus pumilus SAFR-032]
gi|194016222|ref|ZP_03054836.1| YtvA [Bacillus pumilus ATCC 7061]
gi|157682789|gb|ABV63933.1| hypothetical protein BPUM_3280 [Bacillus pumilus SAFR-032]
gi|194011695|gb|EDW21263.1| YtvA [Bacillus pumilus ATCC 7061]
Length = 262
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 60/93 (64%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + + DP LPD P++Y + FL +TGY EV+G+NCRFL G +T+ L QI
Sbjct: 17 ALDYTQVGLTVTDPSLPDNPLIYVNKGFLDMTGYQEPEVLGKNCRFLQGNETEQIALQQI 76
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
+ +I+ ++A TV++ NY+K FWN L ++P+
Sbjct: 77 RTAIENKEAVTVQLKNYKKSGQMFWNELSVAPL 109
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
Query: 10 QSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMF 69
+S+ + + EALD T+TDPS+ +P+++ ++GFL M+G+ E++G+N R
Sbjct: 4 ESYKSENLHLIKEALDYTQVGLTVTDPSLPDNPLIYVNKGFLDMTGYQEPEVLGKNCRFL 63
Query: 70 QGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMS-LVFGKEDGRATHFVA 128
QG T + + +IR AI + + V L NYKK G FW ++ L + +G+ +FV
Sbjct: 64 QGNETEQIALQQIRTAIENKEAVTVQLKNYKKSGQMFWNELSVAPLWIDENEGKRLYFVG 123
Query: 129 VQVPIVSRKHMR 140
+Q + K +
Sbjct: 124 LQKDVTKEKEQQ 135
>gi|119486862|ref|ZP_01620837.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
gi|119456155|gb|EAW37288.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
Length = 1781
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 63/92 (68%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
VL D L D P+++ + AF K+TGY +E++G+N RFL G D + L +++E+++ ++
Sbjct: 765 IVLADARLEDHPIIFVNPAFEKITGYSASEIIGENTRFLQGTDNNQPELERLRETLKNQE 824
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+CTV + NYRKD S FWN L++SPI + G +
Sbjct: 825 SCTVILRNYRKDGSLFWNELNLSPIYDQQGNL 856
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+ + D + HPI+F + F K++G+S +EIIG N R QG N+ + +RE ++
Sbjct: 763 NGIVLADARLEDHPIIFVNPAFEKITGYSASEIIGENTRFLQGTDNNQPELERLRETLKN 822
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ V L NY+KDG+ FW +S ++ ++ G TH++ +Q + K
Sbjct: 823 QESCTVILRNYRKDGSLFWNELNLSPIYDQQ-GNLTHYLGIQNDVTESK 870
>gi|393767962|ref|ZP_10356505.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. GXF4]
gi|392726568|gb|EIZ83890.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. GXF4]
Length = 807
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 74/119 (62%), Gaps = 4/119 (3%)
Query: 227 CGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVG 286
G+R S G+ L+ + + + ++ DP+LPD P+V+A+ AF +L GY +++G
Sbjct: 35 AGQRTSAAGVDL----LFTAAEKTRMPQIVTDPNLPDNPIVFANRAFQELCGYGAEDLIG 90
Query: 287 QNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+NCRFL G TD + + +++++I + V ILNY +D + F N L++SP+ + SG++
Sbjct: 91 RNCRFLQGPGTDPSDVAKVRDAIAARRDVVVEILNYHRDGTPFRNELYVSPVFDPSGQL 149
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 77/139 (55%), Gaps = 2/139 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP++ +PIVFA+R F ++ G+ ++IGRN R QGP T+ + ++R+AI R +
Sbjct: 60 VTDPNLPDNPIVFANRAFQELCGYGAEDLIGRNCRFLQGPGTDPSDVAKVRDAIAARRDV 119
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGG 152
V +LNY +DGTPF +S VF G+ +F A Q+ V+R ++ SE
Sbjct: 120 VVEILNYHRDGTPFRNELYVSPVF-DPSGQLRYFFASQLD-VTRFRTEEERLAESEARYQ 177
Query: 153 SRLREIVFGSCRREVCSDS 171
+ I G C E+ D+
Sbjct: 178 TLFEAIDAGFCVAEMRFDA 196
>gi|55377685|ref|YP_135535.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
gi|55230410|gb|AAV45829.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
Length = 748
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 6/165 (3%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ A+DE P TIT P PI +A+R FL+++G++ +E+ GRN R QG T +
Sbjct: 257 IKRAMDEAPVGITITGPKQEDTPISYANRQFLELTGYTESEVRGRNCRFLQGEETEAEPV 316
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+R AI + P+ V L NY+KDGT FW ++ V DG ++V Q I RK
Sbjct: 317 DAMRAAIDADEPVSVELRNYRKDGTMFWNQVSIAPVRDN-DGTVVNYVGFQRDITERKEH 375
Query: 140 RNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSD 184
+ SE +++++ R EV + VL L+++
Sbjct: 376 ERRLKALSE-----SVQDLLQADTREEVAEIGVETARTVLGLEAN 415
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 64/107 (59%), Gaps = 7/107 (6%)
Query: 247 LGRIKQSF-------VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
L RIK++ + P D P+ YA+ FL+LTGY +EV G+NCRFL G +T+
Sbjct: 254 LSRIKRAMDEAPVGITITGPKQEDTPISYANRQFLELTGYTESEVRGRNCRFLQGEETEA 313
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ ++ +I ++ +V + NYRKD + FWN + I+P+R+ G V+
Sbjct: 314 EPVDAMRAAIDADEPVSVELRNYRKDGTMFWNQVSIAPVRDNDGTVV 360
>gi|448561065|ref|ZP_21634417.1| PAS-PAC-PAC sensing histidine kinase [Haloferax prahovense DSM
18310]
gi|445721297|gb|ELZ72965.1| PAS-PAC-PAC sensing histidine kinase [Haloferax prahovense DSM
18310]
Length = 871
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 56/76 (73%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322
D P+ Y +DAF ++TGYDR+EV+G+NCRFL G +TD+ + ++ E+I+ ++ V + NY
Sbjct: 179 DQPLTYINDAFEEMTGYDRSEVLGRNCRFLQGEETDSEPVEKLHEAIEAGESVAVSLTNY 238
Query: 323 RKDKSSFWNLLHISPI 338
RKD + FWN L ISP+
Sbjct: 239 RKDGTPFWNELKISPV 254
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D TIT+ P+ + + F +M+G+ R+E++GRN R QG T+ + ++
Sbjct: 163 AMDSATVGITITEAD-DDQPLTYINDAFEEMTGYDRSEVLGRNCRFLQGEETDSEPVEKL 221
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
EAI + V+L NY+KDGTPFW K+S V+ EDG THFV Q R ++N
Sbjct: 222 HEAIEAGESVAVSLTNYRKDGTPFWNELKISPVY--EDGELTHFVGFQTDATVRHALKN 278
>gi|292654797|ref|YP_003534694.1| PAS-PAC-PAC sensing histidine kinase [Haloferax volcanii DS2]
gi|448293062|ref|ZP_21483306.1| PAS-PAC-PAC sensing histidine kinase [Haloferax volcanii DS2]
gi|291370941|gb|ADE03168.1| pas-pac-pac sensing his kinase [Haloferax volcanii DS2]
gi|445571562|gb|ELY26109.1| PAS-PAC-PAC sensing histidine kinase [Haloferax volcanii DS2]
Length = 858
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 53/76 (69%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322
D P+ Y +DAF ++TGYDR+EV+G+NCRFL G DTD + + E++ ++ V + NY
Sbjct: 165 DQPLTYVNDAFEEMTGYDRSEVIGRNCRFLQGDDTDPEAVETLHEAVDAGESAAVGLTNY 224
Query: 323 RKDKSSFWNLLHISPI 338
RKD + FWN L ISP+
Sbjct: 225 RKDGTPFWNDLKISPV 240
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D TIT+ P+ + + F +M+G+ R+E+IGRN R QG T+ + +
Sbjct: 149 AMDSATVGITITEAD-DDQPLTYVNDAFEEMTGYDRSEVIGRNCRFLQGDDTDPEAVETL 207
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
EA+ V L NY+KDGTPFW K+S V+ +DG THFV Q R +RN
Sbjct: 208 HEAVDAGESAAVGLTNYRKDGTPFWNDLKISPVY--DDGELTHFVGFQTDATVRHALRN 264
>gi|254418026|ref|ZP_05031750.1| PAS fold family [Brevundimonas sp. BAL3]
gi|196184203|gb|EDX79179.1| PAS fold family [Brevundimonas sp. BAL3]
Length = 878
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 64/103 (62%), Gaps = 1/103 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
IT+P +P+VFA+ F +++G++R EI+GRN R QGP T+ + IR A+ R
Sbjct: 53 MVITNPRRPDNPVVFANEAFCRLTGYAREEILGRNCRFLQGPETDPEAVSRIRAAVDAVR 112
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
PIE+++ N++KDG PFW M+ VF +G +F A QV +
Sbjct: 113 PIEIDIRNHRKDGAPFWNRLLMAPVF-DGNGVLAYFFASQVDV 154
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 62/93 (66%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ V+ +P PD P+V+A++AF +LTGY R E++G+NCRFL G +TD + +I+ ++
Sbjct: 50 RMPMVITNPRRPDNPVVFANEAFCRLTGYAREEILGRNCRFLQGPETDPEAVSRIRAAVD 109
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+ + I N+RKD + FWN L ++P+ + +G
Sbjct: 110 AVRPIEIDIRNHRKDGAPFWNRLLMAPVFDGNG 142
>gi|186686857|ref|YP_001870050.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Nostoc punctiforme PCC 73102]
gi|186469209|gb|ACC85009.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Nostoc punctiforme PCC 73102]
Length = 1043
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 61/89 (68%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
+L DP+ PD P++Y + AF +TGY +EV+G+NCRFL G D + L +++ +IQ ++
Sbjct: 242 ILTDPNQPDNPIIYVNPAFELITGYCASEVIGRNCRFLQGNDLEQVALQELRSAIQEQRE 301
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASG 343
C V + NYRKD FWN L+++P+ + SG
Sbjct: 302 CHVILRNYRKDNFLFWNELYLAPVFDNSG 330
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI++ + F ++G+ +E+IGRN R QG + + E+R AI+E+R
Sbjct: 243 LTDPNQPDNPIIYVNPAFELITGYCASEVIGRNCRFLQGNDLEQVALQELRSAIQEQREC 302
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
V L NY+KD FW ++ VF G T+F+ +Q I
Sbjct: 303 HVILRNYRKDNFLFWNELYLAPVFDN-SGYLTNFIGIQTDI 342
>gi|389845791|ref|YP_006348030.1| bacterioopsin activator [Haloferax mediterranei ATCC 33500]
gi|448616589|ref|ZP_21665299.1| bacterio-opsin activator [Haloferax mediterranei ATCC 33500]
gi|388243097|gb|AFK18043.1| bacterioopsin activator [Haloferax mediterranei ATCC 33500]
gi|445751244|gb|EMA02681.1| bacterio-opsin activator [Haloferax mediterranei ATCC 33500]
Length = 667
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 63/116 (54%), Gaps = 1/116 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+DE P TI D S+ P+V+ + F ++G+S +GRN R QGPRTN +
Sbjct: 135 EQAMDEAPVGITIADCSLPDLPLVYVNEAFESLTGYSAEAALGRNCRYLQGPRTNLEQVA 194
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
E+R AI E V LLNY++ G FW ++ + G DG TH+V Q I R
Sbjct: 195 ELRRAIEAEESASVELLNYRESGETFWNRVDVAPLSGP-DGAVTHYVGFQTDITER 249
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 58/92 (63%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ D LPD+P+VY ++AF LTGY +G+NCR+L G T+ + +++ +I+ E+
Sbjct: 145 ITIADCSLPDLPLVYVNEAFESLTGYSAEAALGRNCRYLQGPRTNLEQVAELRRAIEAEE 204
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +V +LNYR+ +FWN + ++P+ G V
Sbjct: 205 SASVELLNYRESGETFWNRVDVAPLSGPDGAV 236
>gi|399911834|ref|ZP_10780148.1| response regulator receiver modulated PAS/PAC sensor-containing
diguanylate cyclase/phosphodiesterase [Halomonas sp.
KM-1]
Length = 830
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 61/91 (67%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
V+ D PD+P+VY + AF ++TGY R+EV+G+NCRFL G D + +I+ + ++
Sbjct: 148 VIADARAPDLPIVYVNAAFERITGYSRDEVMGRNCRFLQGDQPDPALGQRIRRELDAQRD 207
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ + NYRKD S FWN LHISP+R+ + ++
Sbjct: 208 FHMTLCNYRKDGSPFWNDLHISPVRDDTQQI 238
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+ I D PIV+ + F +++G+SR E++GRN R QG + + IR +
Sbjct: 145 NGVVIADARAPDLPIVYVNAAFERITGYSRDEVMGRNCRFLQGDQPDPALGQRIRRELDA 204
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRA-THFVAVQVPIVSRKHMRNSGMSYS 147
+R + L NY+KDG+PFW +S V ++D + +H++ + I + + S ++Y
Sbjct: 205 QRDFHMTLCNYRKDGSPFWNDLHISPV--RDDTQQISHYIGILNDISAEREY-ESRLAYH 261
Query: 148 ED 149
D
Sbjct: 262 AD 263
>gi|452206471|ref|YP_007486593.1| sensor box histidine kinase [Natronomonas moolapensis 8.8.11]
gi|452082571|emb|CCQ35831.1| sensor box histidine kinase [Natronomonas moolapensis 8.8.11]
Length = 583
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 59/90 (65%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315
+ D L D P++Y +D F +TGY R+EV+GQNCRFL G T + +++ +I EQ+
Sbjct: 132 VADVTLDDEPLIYVNDGFGDITGYPRDEVLGQNCRFLQGDGTRDEPVAKMRAAIDAEQSV 191
Query: 316 TVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV + NYRKD + FWN + +SP+ N+ G V
Sbjct: 192 TVELRNYRKDGTEFWNRITLSPVENSDGTV 221
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D+ P T+ D ++ P+++ + GF ++G+ R E++G+N R QG T + ++
Sbjct: 122 AIDQAPVGVTVADVTLDDEPLIYVNDGFGDITGYPRDEVLGQNCRFLQGDGTRDEPVAKM 181
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK-HMR 140
R AI E+ + V L NY+KDGT FW +S V DG TH++ Q I K H R
Sbjct: 182 RAAIDAEQSVTVELRNYRKDGTEFWNRITLSPV-ENSDGTVTHYLGFQQNISEMKTHQR 239
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%)
Query: 268 YASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKS 327
Y + AF ++TGY E +GQ R LN D D + E+I + I N K
Sbjct: 266 YVNPAFERITGYSAAEAIGQTPRILNSGDQDEAFYEEFWETITAGETWEAEIANQTKAGE 325
Query: 328 SFWNLLHISPIRNASGKV 345
+ ++PI + G +
Sbjct: 326 RYETTQRVTPIEDDRGTI 343
>gi|358459156|ref|ZP_09169358.1| putative PAS/PAC sensor protein [Frankia sp. CN3]
gi|357077644|gb|EHI87101.1| putative PAS/PAC sensor protein [Frankia sp. CN3]
Length = 603
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SFT+ DP P+ + + F +++G+S AE +GRN R QGPR++ + A RE
Sbjct: 30 SFTLADPYQPDTPLTWVNDAFTRITGYSFAEAVGRNCRFLQGPRSDPAAAARLGAAQRER 89
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140
RP V +LNY+KDG+ FW ++ V + DGR THFV VQ + R R
Sbjct: 90 RPTRVEILNYRKDGSTFWSEIALAPVLDR-DGRLTHFVGVQSDVTDRVEAR 139
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 59/93 (63%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
SF L DP+ PD P+ + +DAF ++TGY E VG+NCRFL G +D ++ + +
Sbjct: 30 SFTLADPYQPDTPLTWVNDAFTRITGYSFAEAVGRNCRFLQGPRSDPAAAARLGAAQRER 89
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ V ILNYRKD S+FW+ + ++P+ + G++
Sbjct: 90 RPTRVEILNYRKDGSTFWSEIALAPVLDRDGRL 122
>gi|448468122|ref|ZP_21599753.1| bacterio-opsin activator [Halorubrum kocurii JCM 14978]
gi|445810865|gb|EMA60879.1| bacterio-opsin activator [Halorubrum kocurii JCM 14978]
Length = 668
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+ E P +I+DP + +P+V+A+ ++ +G+ E +GRN R QGP T+ T+ I
Sbjct: 145 AVAEAPVGVSISDPDLPDYPLVYANEAWVDHTGYPIEEALGRNPRFLQGPGTDPETVERI 204
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+A+ + I V + NY+KDGTPFW ++ V+ +DG H+V Q + RK+
Sbjct: 205 AKAVADNEEITVEIRNYRKDGTPFWNELTVAPVY-DDDGEIAHYVGFQNDVTDRKN 259
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 96/182 (52%), Gaps = 5/182 (2%)
Query: 166 EVCSDSLLDLDRVLALDSDDTGLEIEDSCE--ASDLEKRKAATAIDNILSVLTHYSQLTG 223
E +D+ L++ VL +DD D+ E +++ R +ID ++S ++ ++ T
Sbjct: 66 EAIADADLEVPVVL-FTADDEEARAADARERGIAEVRHRNGTGSIDRLVSDVS--TRCTD 122
Query: 224 RLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNE 283
G R + ++ + ++ + DP LPD P+VYA++A++ TGY E
Sbjct: 123 GPPPGARQDVSDHKPSATEMKRAVAEAPVGVSISDPDLPDYPLVYANEAWVDHTGYPIEE 182
Query: 284 VVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+G+N RFL G TD + +I +++ + TV I NYRKD + FWN L ++P+ + G
Sbjct: 183 ALGRNPRFLQGPGTDPETVERIAKAVADNEEITVEIRNYRKDGTPFWNELTVAPVYDDDG 242
Query: 344 KV 345
++
Sbjct: 243 EI 244
>gi|17230662|ref|NP_487210.1| hypothetical protein alr3170 [Nostoc sp. PCC 7120]
gi|17132265|dbj|BAB74869.1| alr3170 [Nostoc sp. PCC 7120]
Length = 1021
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 60/92 (65%)
Query: 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIK 306
L I VL D + PD P++Y + AF +TGY EV+GQNCRFL +TD L++++
Sbjct: 208 LATISNGIVLTDANQPDNPIIYVNQAFETMTGYSAGEVIGQNCRFLQTNETDQPGLWELR 267
Query: 307 ESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
+++ ++ C V I N+RKD + FWN L+I+P+
Sbjct: 268 SALREKKECHVIIKNFRKDGTEFWNELYIAPV 299
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ + L + + +TD + +PI++ ++ F M+G+S E+IG+N R Q T++ +
Sbjct: 204 MEQVLATISNGIVLTDANQPDNPIIYVNQAFETMTGYSAGEVIGQNCRFLQTNETDQPGL 263
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
E+R A+RE++ V + N++KDGT FW ++ VF + + THF+ VQ I +H+
Sbjct: 264 WELRSALREKKECHVIIKNFRKDGTEFWNELYIAPVFDSCE-QLTHFIGVQNDIT--QHL 320
Query: 140 R 140
+
Sbjct: 321 Q 321
>gi|393769601|ref|ZP_10358123.1| putative PAS/PAC sensor protein [Methylobacterium sp. GXF4]
gi|392725072|gb|EIZ82415.1| putative PAS/PAC sensor protein [Methylobacterium sp. GXF4]
Length = 164
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 62/92 (67%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
++ DP D P+V+A+DAFL LTGY R EV G+NCRFL G T+ + +++ +I+
Sbjct: 37 IVTDPRQYDNPIVFANDAFLNLTGYTRLEVTGRNCRFLQGPGTEAAAVDRLRAAIRQGVD 96
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ +LNYRKD S F N L++ P+R+A+G V+
Sbjct: 97 IKIDLLNYRKDGSVFQNALYVGPVRDATGTVV 128
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 7/104 (6%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP +PIVFA+ FL ++G++R E+ GRN R QGP T + +R AIR+ I
Sbjct: 38 VTDPRQYDNPIVFANDAFLNLTGYTRLEVTGRNCRFLQGPGTEAAAVDRLRAAIRQGVDI 97
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGK---EDGRATHFVAVQVPI 133
+++LLNY+KDG+ +F+ +L G G ++ A Q+ +
Sbjct: 98 KIDLLNYRKDGS----VFQNALYVGPVRDATGTVVYYFASQIDV 137
>gi|427409042|ref|ZP_18899244.1| PAS domain S-box protein [Sphingobium yanoikuyae ATCC 51230]
gi|425713352|gb|EKU76366.1| PAS domain S-box protein [Sphingobium yanoikuyae ATCC 51230]
Length = 866
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 65/95 (68%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ +P L D P+V+A+D+F +LTGY+R+E++G+NCRFL G +TD T + I ++++
Sbjct: 39 RMPMIITNPRLHDNPVVFANDSFCRLTGYERDEILGRNCRFLQGSETDPTDVQAIHDAVE 98
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ + I NYRK FWN L ++P+ + +GK+
Sbjct: 99 AVRPIEIDIRNYRKCGEPFWNRLLLAPVFDGAGKL 133
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
IT+P + +P+VFA+ F +++G+ R EI+GRN R QG T+ + I +A+ RPI
Sbjct: 44 ITNPRLHDNPVVFANDSFCRLTGYERDEILGRNCRFLQGSETDPTDVQAIHDAVEAVRPI 103
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
E+++ NY+K G PFW ++ VF G+ +F A QV +
Sbjct: 104 EIDIRNYRKCGEPFWNRLLLAPVFDGA-GKLAYFFASQVDV 143
>gi|359394678|ref|ZP_09187731.1| hypothetical protein KUC_1328 [Halomonas boliviensis LC1]
gi|357971925|gb|EHJ94370.1| hypothetical protein KUC_1328 [Halomonas boliviensis LC1]
Length = 931
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 60/91 (65%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
V++D D+PMVY + AF ++TGY RN+V+G NCRFL G +TD + Q+ I ++
Sbjct: 379 VIVDAQRSDLPMVYVNAAFERITGYARNQVLGHNCRFLQGDETDPATIKQLHAGIVEQRE 438
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
V I NYR+D + FWN L+ISP+ + + +V
Sbjct: 439 VHVVIRNYRRDGTVFWNDLYISPVLDENAEV 469
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+ I D S P+V+ + F +++G++R +++G N R QG T+ TI ++ I E
Sbjct: 376 NGVVIVDAQRSDLPMVYVNAAFERITGYARNQVLGHNCRFLQGDETDPATIKQLHAGIVE 435
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+R + V + NY++DGT FW +S V E+ THF+ VQ I ++
Sbjct: 436 QREVHVVIRNYRRDGTVFWNDLYISPVL-DENAEVTHFIGVQNDISEQR 483
>gi|448331268|ref|ZP_21520534.1| HTR-like protein [Natrinema versiforme JCM 10478]
gi|445609551|gb|ELY63349.1| HTR-like protein [Natrinema versiforme JCM 10478]
Length = 717
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 83/149 (55%), Gaps = 11/149 (7%)
Query: 202 RKAATAIDNILSVLTHYSQLT--GRLVCGKRCSLPGMGFISSSLYI---SLGRIKQSFVL 256
RK +T ID L H T G L+C +L + + L + ++ +L
Sbjct: 230 RKDSTRID-----LEHTLSFTDDGSLIC-TLSNLTTDESVETELSMRERAMNEAPVGIIL 283
Query: 257 IDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACT 316
+PH D P++YA+D F LTGY+++EV+G+NCRFL G T + +++ +++ ++ T
Sbjct: 284 TNPHAEDNPIIYANDEFTDLTGYEKDEVLGRNCRFLQGEQTREEPVAELRNAVEKRESVT 343
Query: 317 VRILNYRKDKSSFWNLLHISPIRNASGKV 345
V + NYR D + FWN + I+P+ + +G +
Sbjct: 344 VELRNYRADGTEFWNRVRIAPLFDDNGDI 372
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P +T+P +PI++A+ F ++G+ + E++GRN R QG +T + E+
Sbjct: 273 AMNEAPVGIILTNPHAEDNPIIYANDEFTDLTGYEKDEVLGRNCRFLQGEQTREEPVAEL 332
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R A+ + + V L NY+ DGT FW +++ +F ++G +FV Q + +K
Sbjct: 333 RNAVEKRESVTVELRNYRADGTEFWNRVRIAPLF-DDNGDIEYFVGFQDDVTGKK 386
>gi|17230367|ref|NP_486915.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
gi|17131969|dbj|BAB74574.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
Length = 1817
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 63/100 (63%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L V+ D LP P++Y + AF ++TGY EVVG+NCRFL G DT + + ++
Sbjct: 443 ALAASSNGIVISDAKLPHYPVIYVNSAFEQITGYKATEVVGRNCRFLLGNDTQQSAIEEL 502
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +++ + C V + NYRKD S FWN L +SPI N +G++
Sbjct: 503 RSALKAGKNCKVILRNYRKDGSLFWNQLSVSPIYNDNGQL 542
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 85/173 (49%), Gaps = 18/173 (10%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL + I+D + +P+++ + F +++G+ E++GRN R G T + I E+
Sbjct: 443 ALAASSNGIVISDAKLPHYPVIYVNSAFEQITGYKATEVVGRNCRFLLGNDTQQSAIEEL 502
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH---- 138
R A++ + +V L NY+KDG+ FW +S ++ ++G+ +HF+ +Q I R+
Sbjct: 503 RSALKAGKNCKVILRNYRKDGSLFWNQLSVSPIYN-DNGQLSHFIGIQTDISDRQQAEAS 561
Query: 139 MRNSGMSYSEDGGG-------------SRLREIVFGSCRREVCSDSLLDLDRV 178
+R +++ G + E +FG + +C S+ L +V
Sbjct: 562 LRRQALTFENIYDGVIITNLQGQILDWNPAAERMFGYSKNHICGQSISTLHKV 614
>gi|156062526|ref|XP_001597185.1| hypothetical protein SS1G_01379 [Sclerotinia sclerotiorum 1980]
gi|154696715|gb|EDN96453.1| hypothetical protein SS1G_01379 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 535
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 59/92 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
F L DP D P+V+ASD F+ +TGY R +++ +NCRFL G TD +++ SIQ +
Sbjct: 202 FCLTDPKRADNPIVFASDGFVSVTGYSRTDIIPRNCRFLQGAYTDRQSTKRLRTSIQNCE 261
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+LNYRK+ FWNLL++SP+ + +G V
Sbjct: 262 ETVELLLNYRKNGDPFWNLLYVSPLLDGNGDV 293
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 72/116 (62%), Gaps = 5/116 (4%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L D F +TDP + +PIVFAS GF+ ++G+SR +II RN R QG T+R++ +R +I
Sbjct: 198 LGDCFCLTDPKRADNPIVFASDGFVSVTGYSRTDIIPRNCRFLQGAYTDRQSTKRLRTSI 257
Query: 87 RE-ERPIEVNLLNYKKDGTPFWMLFKMS-LVFGKEDGRATHFVAVQVPIVSRKHMR 140
+ E +E+ LLNY+K+G PFW L +S L+ G D R F+ Q+ + H R
Sbjct: 258 QNCEETVEL-LLNYRKNGDPFWNLLYVSPLLDGNGDVR--FFLGGQINCSTTIHSR 310
>gi|417305855|ref|ZP_12092797.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula baltica WH47]
gi|327537864|gb|EGF24566.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula baltica WH47]
Length = 1637
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
EA+ + ITD S HPI F ++GF M+GFS EIIGRN R QG T+ T++
Sbjct: 991 EAVQSAANGIVITDCSSEDHPITFVNKGFTDMTGFSEQEIIGRNCRFLQGEHTDNETVLR 1050
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
IR A+ + + NY+K+G PFW ++ V E+G THFV VQ + R
Sbjct: 1051 IRRALGRGESVRELIKNYRKNGEPFWNDLYITPVH-DENGILTHFVGVQNDVTER 1104
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ D D P+ + + F +TG+ E++G+NCRFL G TD + +I+ ++ +
Sbjct: 1000 IVITDCSSEDHPITFVNKGFTDMTGFSEQEIIGRNCRFLQGEHTDNETVLRIRRALGRGE 1059
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+ I NYRK+ FWN L+I+P+ + +G
Sbjct: 1060 SVRELIKNYRKNGEPFWNDLYITPVHDENG 1089
>gi|440724213|ref|ZP_20904546.1| multi-sensor hybrid histidine kinase [Pseudomonas syringae
BRIP34876]
gi|440726639|ref|ZP_20906891.1| multi-sensor hybrid histidine kinase [Pseudomonas syringae
BRIP34881]
gi|440358235|gb|ELP95617.1| multi-sensor hybrid histidine kinase [Pseudomonas syringae
BRIP34876]
gi|440365869|gb|ELQ02957.1| multi-sensor hybrid histidine kinase [Pseudomonas syringae
BRIP34881]
Length = 647
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP +PIVFA+ F +++G++ +++GRN R QGP TN+ I +R+AIR P
Sbjct: 3 ITDPRQDDNPIVFANAAFYQLTGYAAEDVVGRNCRFLQGPATNQDHIAMVRDAIRRREPT 62
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
E+ L NY+KDG FW + VFG E G +F A
Sbjct: 63 EIKLQNYRKDGKSFWNHLHVHPVFGGE-GELVYFFA 97
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 60/93 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ DP D P+V+A+ AF +LTGY +VVG+NCRFL G T+ + ++++I+ +
Sbjct: 1 MLITDPRQDDNPIVFANAAFYQLTGYAAEDVVGRNCRFLQGPATNQDHIAMVRDAIRRRE 60
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+++ NYRKD SFWN LH+ P+ G+++
Sbjct: 61 PTEIKLQNYRKDGKSFWNHLHVHPVFGGEGELV 93
>gi|16080086|ref|NP_390912.1| blue light GTP-binding receptor [Bacillus subtilis subsp. subtilis
str. 168]
gi|221310973|ref|ZP_03592820.1| hypothetical protein Bsubs1_16521 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221315300|ref|ZP_03597105.1| hypothetical protein BsubsN3_16427 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221320217|ref|ZP_03601511.1| hypothetical protein BsubsJ_16348 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221324499|ref|ZP_03605793.1| hypothetical protein BsubsS_16497 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402777188|ref|YP_006631132.1| blue light GTP-binding receptor [Bacillus subtilis QB928]
gi|452915728|ref|ZP_21964354.1| blue-light photoreceptor [Bacillus subtilis MB73/2]
gi|20138874|sp|O34627.1|PHOT_BACSU RecName: Full=Blue-light photoreceptor; AltName: Full=Photoactive
flavo-yellow protein; AltName: Full=Phototropin homolog
gi|2293304|gb|AAC00382.1| putative protein kinase [Bacillus subtilis]
gi|2635518|emb|CAB15012.1| blue light GTP-binding receptor [Bacillus subtilis subsp. subtilis
str. 168]
gi|402482367|gb|AFQ58876.1| Blue light GTP-binding receptor [Bacillus subtilis QB928]
gi|407961044|dbj|BAM54284.1| blue light GTP-binding receptor [Synechocystis sp. PCC 6803]
gi|407965874|dbj|BAM59113.1| blue light GTP-binding receptor [Bacillus subtilis BEST7003]
gi|452116076|gb|EME06472.1| blue-light photoreceptor [Bacillus subtilis MB73/2]
Length = 261
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 62/94 (65%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L ++ V+ DP L D P+VY + F+++TGY+ E++G+NCRFL G TD + I
Sbjct: 19 ALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNI 78
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIR 339
+ ++Q ++ TV+I NY+KD + FWN L+I P+
Sbjct: 79 RTALQNKEPVTVQIQNYKKDGTMFWNELNIDPME 112
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD + ITDP++ +PIV+ ++GF++M+G+ EI+G+N R QG T+ +
Sbjct: 16 IKKALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR A++ + P+ V + NYKKDGT FW + + E T+FV +Q I +K
Sbjct: 76 DNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPM---EIEDKTYFVGIQNDITKQKE 131
>gi|384176619|ref|YP_005558004.1| sensory box protein [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|349595843|gb|AEP92030.1| sensory box protein [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
Length = 261
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 62/94 (65%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L ++ V+ DP L D P+VY + F+++TGY+ E++G+NCRFL G TD + I
Sbjct: 19 ALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNI 78
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIR 339
+ ++Q ++ TV+I NY+KD + FWN L+I P+
Sbjct: 79 RTALQNKEPVTVQIQNYKKDGTMFWNELNIDPME 112
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD + ITDP++ +PIV+ ++GF++M+G+ EI+G+N R QG T+ +
Sbjct: 16 IKKALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR A++ + P+ V + NYKKDGT FW + + E T+FV +Q I +K
Sbjct: 76 DNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPM---EIEDKTYFVGIQKDITKQKE 131
>gi|448582301|ref|ZP_21645805.1| PAS-PAC-PAC sensing histidine kinase [Haloferax gibbonsii ATCC
33959]
gi|445731949|gb|ELZ83532.1| PAS-PAC-PAC sensing histidine kinase [Haloferax gibbonsii ATCC
33959]
Length = 870
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 55/76 (72%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322
D P+ Y +DAF ++TGYDR+EV+G+NCRFL G +TDT + + E+I+ ++ V + NY
Sbjct: 177 DQPLTYINDAFEEMTGYDRSEVLGRNCRFLQGEETDTEPVELLHEAIEAGESVAVSLTNY 236
Query: 323 RKDKSSFWNLLHISPI 338
RKD + FWN L ISP+
Sbjct: 237 RKDGTPFWNELKISPV 252
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D TIT+ P+ + + F +M+G+ R+E++GRN R QG T+ + +
Sbjct: 161 AMDSATVGITITEAD-DDQPLTYINDAFEEMTGYDRSEVLGRNCRFLQGEETDTEPVELL 219
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
EAI + V+L NY+KDGTPFW K+S V+ EDG THFV Q R ++N
Sbjct: 220 HEAIEAGESVAVSLTNYRKDGTPFWNELKISPVY--EDGELTHFVGFQTDATVRHALKN 276
>gi|399909367|ref|ZP_10777919.1| sensory box/FOG: EAL domain/GGDEF domain containing protein
[Halomonas sp. KM-1]
Length = 1157
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 59/92 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ D D+P+ Y ++AFL LTGY EV+G+NCR L GV+T+ + ++ + +
Sbjct: 608 IVITDASQHDLPISYVNEAFLALTGYREEEVLGRNCRMLQGVETEPDAVAWLRRCVVERR 667
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
C V +LNYRKD S+FWN L++SP+ + G V
Sbjct: 668 DCHVTLLNYRKDGSTFWNALYVSPVLDGDGGV 699
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 2/119 (1%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+ ITD S PI + + FL ++G+ E++GRN RM QG T + +R + E
Sbjct: 606 NGIVITDASQHDLPISYVNEAFLALTGYREEEVLGRNCRMLQGVETEPDAVAWLRRCVVE 665
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYS 147
R V LLNY+KDG+ FW +S V DG THFV ++ VS +H +++S
Sbjct: 666 RRDCHVTLLNYRKDGSTFWNALYVSPVL-DGDGGVTHFVG-ELRDVSERHAYEERLAHS 722
>gi|448611043|ref|ZP_21661677.1| bacterio-opsin activator [Haloferax mucosum ATCC BAA-1512]
gi|445743475|gb|ELZ94956.1| bacterio-opsin activator [Haloferax mucosum ATCC BAA-1512]
Length = 659
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 63/116 (54%), Gaps = 1/116 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+DE P TI D S+ P+V+ + F M+G+S +GRN R QGP+T+ +
Sbjct: 135 EQAMDEAPVGITIADCSLPDRPLVYVNEAFESMTGYSEDAALGRNCRYLQGPKTDPEQVT 194
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+R AI E V LLNY++DG FW ++ + G DG TH+V Q I R
Sbjct: 195 ALRRAIDAEESASVELLNYREDGESFWNRVDVAPLSGP-DGEVTHYVGFQTDITER 249
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 58/92 (63%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ D LPD P+VY ++AF +TGY + +G+NCR+L G TD + ++ +I E+
Sbjct: 145 ITIADCSLPDRPLVYVNEAFESMTGYSEDAALGRNCRYLQGPKTDPEQVTALRRAIDAEE 204
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +V +LNYR+D SFWN + ++P+ G+V
Sbjct: 205 SASVELLNYREDGESFWNRVDVAPLSGPDGEV 236
>gi|428280513|ref|YP_005562248.1| hypothetical protein BSNT_04421 [Bacillus subtilis subsp. natto
BEST195]
gi|291485470|dbj|BAI86545.1| hypothetical protein BSNT_04421 [Bacillus subtilis subsp. natto
BEST195]
Length = 261
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 62/94 (65%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L ++ V+ DP L D P+VY + F+++TGY+ E++G+NCRFL G TD + I
Sbjct: 19 ALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNI 78
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIR 339
+ ++Q ++ TV+I NY+KD + FWN L+I P+
Sbjct: 79 RTALQNKEPVTVQIQNYKKDGTMFWNELNIDPME 112
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD + ITDP++ +PIV+ ++GF++M+G+ EI+G+N R QG T+ +
Sbjct: 16 IKKALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR A++ + P+ V + NYKKDGT FW + + E T+FV +Q I +K
Sbjct: 76 DNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPM---EIEDKTYFVGIQKDITKQKE 131
>gi|440712941|ref|ZP_20893552.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula baltica SWK14]
gi|436442329|gb|ELP35476.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula baltica SWK14]
Length = 1637
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
EA+ + ITD S HPI FA++GF M+GFS EI+GRN R QG T+ T++
Sbjct: 991 EAVQSAANGIVITDCSSEDHPISFANKGFTDMTGFSEQEILGRNCRFLQGEHTDNETVLR 1050
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
IR A+ + + NY+K+G PFW ++ V E+G THFV VQ + R
Sbjct: 1051 IRRALGRGESVRELIKNYRKNGEPFWNDLYITPVH-DENGILTHFVGVQNDVTER 1104
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 53/90 (58%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ D D P+ +A+ F +TG+ E++G+NCRFL G TD + +I+ ++ +
Sbjct: 1000 IVITDCSSEDHPISFANKGFTDMTGFSEQEILGRNCRFLQGEHTDNETVLRIRRALGRGE 1059
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+ I NYRK+ FWN L+I+P+ + +G
Sbjct: 1060 SVRELIKNYRKNGEPFWNDLYITPVHDENG 1089
>gi|357406412|ref|YP_004918336.1| PAS sensor protein [Methylomicrobium alcaliphilum 20Z]
gi|351719077|emb|CCE24751.1| PAS sensor protein [Methylomicrobium alcaliphilum 20Z]
Length = 164
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+ LD + T++DP + +PIVFA+ F K++G+SR +IIG+N R QG ++ I
Sbjct: 18 QILDGCVNGITLSDPDLEDNPIVFANEVFEKITGYSRDDIIGKNCRFLQGKDHDQPEIEI 77
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
+REAIR +R +EV L NYKK+G F+ ++ +F E GR +F+ +Q I + H ++
Sbjct: 78 LREAIRNQRAVEVTLKNYKKNGDLFYNRLSVTPLFDNE-GRLIYFLGIQYDITEQIHAQH 136
Query: 142 S 142
Sbjct: 137 E 137
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 63/92 (68%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
L DP L D P+V+A++ F K+TGY R++++G+NCRFL G D D + ++E+I+ ++A
Sbjct: 28 TLSDPDLEDNPIVFANEVFEKITGYSRDDIIGKNCRFLQGKDHDQPEIEILREAIRNQRA 87
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
V + NY+K+ F+N L ++P+ + G+++
Sbjct: 88 VEVTLKNYKKNGDLFYNRLSVTPLFDNEGRLI 119
>gi|440718889|ref|ZP_20899327.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula baltica SWK14]
gi|436435877|gb|ELP29686.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula baltica SWK14]
Length = 1739
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 62/92 (67%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
FV++D D P+VYA+ F LTG+ E+VG+NCRFL G TD + + I+++I+ ++
Sbjct: 993 FVIVDAQAKDTPIVYANQGFFNLTGFAPEEIVGRNCRFLQGPLTDPSNVDMIRDAIKKKK 1052
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
C V +LNYR+D S F N L I+PI+++ G V
Sbjct: 1053 ECRVTLLNYRRDGSQFHNDLIITPIQDSQGVV 1084
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D + F I D PIV+A++GF ++GF+ EI+GRN R QGP T+ + I
Sbjct: 985 AIDAASNGFVIVDAQAKDTPIVYANQGFFNLTGFAPEEIVGRNCRFLQGPLTDPSNVDMI 1044
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
R+AI++++ V LLNY++DG+ F ++ + + G THFV VQ
Sbjct: 1045 RDAIKKKKECRVTLLNYRRDGSQFHNDLIITPIQDSQ-GVVTHFVGVQ 1091
>gi|452207589|ref|YP_007487711.1| sensor box histidine kinase [Natronomonas moolapensis 8.8.11]
gi|452083689|emb|CCQ37003.1| sensor box histidine kinase [Natronomonas moolapensis 8.8.11]
Length = 583
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 58/92 (63%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++D L P++Y +D F+ +TGY RNE +G+NCRFL G +T + +++ +I EQ
Sbjct: 130 ITVVDVTLDHEPLIYINDGFIDMTGYSRNEALGRNCRFLQGEETRDEPVARMRAAIDAEQ 189
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV + NYRKD + FWN + +SP+ N G V
Sbjct: 190 PVTVELRNYRKDGTEFWNRIRLSPVENNDGTV 221
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 70/130 (53%), Gaps = 1/130 (0%)
Query: 8 IEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGR 67
I QS + T A+D+ P T+ D ++ P+++ + GF+ M+G+SR E +GRN R
Sbjct: 107 ISQSDRDTATTLGGTAIDQAPVGITVVDVTLDHEPLIYINDGFIDMTGYSRNEALGRNCR 166
Query: 68 MFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
QG T + +R AI E+P+ V L NY+KDGT FW ++S V DG T ++
Sbjct: 167 FLQGEETRDEPVARMRAAIDAEQPVTVELRNYRKDGTEFWNRIRLSPVENN-DGTVTRYL 225
Query: 128 AVQVPIVSRK 137
Q I K
Sbjct: 226 GFQENISEMK 235
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322
D + Y + AF + TGY E +G+ R LN + D E+I + I+N
Sbjct: 261 DGTIRYVNPAFERTTGYSAAEAIGRTPRMLNSGEQDEAFYEAFWETIAAGETWEADIVNQ 320
Query: 323 RKDKSSFWNLLHISPIRNASGKV 345
RK + + ++PI + G +
Sbjct: 321 RKTGERYETIQRVTPIEDDRGTI 343
>gi|32473151|ref|NP_866145.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
gi|32397830|emb|CAD73831.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
Length = 1637
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
EA+ + ITD S+ HPI F ++GF M+GFS EI+GRN R QG T+ T++
Sbjct: 991 EAVQSAANGIVITDCSLEDHPISFVNKGFTDMTGFSEQEILGRNCRFLQGEHTDNETVLR 1050
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
IR A+ + + NY+K+G PFW ++ V E+G THFV VQ + R
Sbjct: 1051 IRRALGRGESVRELIKNYRKNGEPFWNDLYITPVH-DENGILTHFVGVQNDVTER 1104
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 53/90 (58%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ D L D P+ + + F +TG+ E++G+NCRFL G TD + +I+ ++ +
Sbjct: 1000 IVITDCSLEDHPISFVNKGFTDMTGFSEQEILGRNCRFLQGEHTDNETVLRIRRALGRGE 1059
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+ I NYRK+ FWN L+I+P+ + +G
Sbjct: 1060 SVRELIKNYRKNGEPFWNDLYITPVHDENG 1089
>gi|116195560|ref|XP_001223592.1| hypothetical protein CHGG_04378 [Chaetomium globosum CBS 148.51]
gi|88180291|gb|EAQ87759.1| hypothetical protein CHGG_04378 [Chaetomium globosum CBS 148.51]
Length = 734
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 60/95 (63%), Gaps = 3/95 (3%)
Query: 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLY 303
Y LG ++F L DPH PD P+++ASD + GY R ++VG+NCR L G+ T+ T +
Sbjct: 303 YPGLG---EAFCLTDPHQPDNPVIFASDGLSAMLGYSRRQLVGRNCRLLQGIATEATAAF 359
Query: 304 QIKESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
++ +++ + T ++NYR D + +WNLL I P+
Sbjct: 360 RLSQAVGAGREATELLINYRPDGTPYWNLLFICPL 394
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 72/139 (51%), Gaps = 14/139 (10%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
++F +TDP +P++FAS G M G+SR +++GRN R+ QG T + +A+
Sbjct: 308 EAFCLTDPHQPDNPVIFASDGLSAMLGYSRRQLVGRNCRLLQGIATEATAAFRLSQAVGA 367
Query: 89 ERPIEVNLLNYKKDGTPFW-MLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYS 147
R L+NY+ DGTP+W +LF L+ E+G +F+ QV + N G Y
Sbjct: 368 GREATELLINYRPDGTPYWNLLFICPLM---ENGTVRYFLGAQVNVS-----ENMGSDYM 419
Query: 148 EDGGGSRLREIVFGSCRRE 166
E G + FG R+E
Sbjct: 420 EIMG-----VLNFGPPRQE 433
>gi|374621544|ref|ZP_09694075.1| PAS sensor protein [Ectothiorhodospira sp. PHS-1]
gi|373940676|gb|EHQ51221.1| PAS sensor protein [Ectothiorhodospira sp. PHS-1]
Length = 150
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 64/110 (58%)
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G I S L L L DP LPD P+VYA+ F +TGY R E++G NCRFL G D
Sbjct: 11 GLIPSVLAQILDTCVNGVTLSDPDLPDNPIVYANAVFEHMTGYSRAEIIGHNCRFLQGED 70
Query: 297 TDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ + +I++++ + V + NYRKD + F N L I P+ +ASGK++
Sbjct: 71 REQPAIEEIRKALAERREVEVTLRNYRKDGTLFHNRLSIRPLFDASGKLI 120
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+ LD + T++DP + +PIV+A+ F M+G+SRAEIIG N R QG + I E
Sbjct: 19 QILDTCVNGVTLSDPDLPDNPIVYANAVFEHMTGYSRAEIIGHNCRFLQGEDREQPAIEE 78
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
IR+A+ E R +EV L NY+KDGT F + +F G+ +F+ VQ
Sbjct: 79 IRKALAERREVEVTLRNYRKDGTLFHNRLSIRPLFDAS-GKLIYFLGVQ 126
>gi|347838679|emb|CCD53251.1| similar to regulator of G protein [Botryotinia fuckeliana]
Length = 593
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 60/92 (65%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
F L DP D P+V+ASD F+ +TGY R++++ +NCRFL G TD +++ SI+ +
Sbjct: 257 FCLTDPRRADNPIVFASDGFVSVTGYSRSDIIPRNCRFLQGSFTDRQATKRLRTSIENRE 316
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+LNYRK+ FWNLL++SP+ + +G V
Sbjct: 317 ETVELLLNYRKNGDPFWNLLYVSPLLDGNGDV 348
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 92/183 (50%), Gaps = 37/183 (20%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L D F +TDP + +PIVFAS GF+ ++G+SR++II RN R QG T+R+ +R +I
Sbjct: 253 LGDCFCLTDPRRADNPIVFASDGFVSVTGYSRSDIIPRNCRFLQGSFTDRQATKRLRTSI 312
Query: 87 RE-ERPIEVNLLNYKKDGTPFWMLFKMS-LVFGKEDGRATHFVAVQVPIVSRKHMRNSGM 144
E +E+ LLNY+K+G PFW L +S L+ G D R F+ Q+ + H R
Sbjct: 313 ENREETVEL-LLNYRKNGDPFWNLLYVSPLLDGNGDVR--FFLGGQINCSTTIHSRT--- 366
Query: 145 SYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDLEKRKA 204
D+ R+L+L+ +DTG IE S + + +++
Sbjct: 367 -----------------------------DVLRILSLNDEDTGSFIEGSNKTPSVRSKES 397
Query: 205 ATA 207
A
Sbjct: 398 NNA 400
>gi|448630469|ref|ZP_21673124.1| HTR-like protein [Haloarcula vallismortis ATCC 29715]
gi|445756392|gb|EMA07767.1| HTR-like protein [Haloarcula vallismortis ATCC 29715]
Length = 726
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 61/92 (66%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
V+ DP D P++YA+D + LTGY E++G+NCR L G +T+ + ++++I TE+
Sbjct: 285 VITDPDQTDNPLIYANDHYRDLTGYSLPELLGKNCRMLQGENTEPEPVAAMRDAIDTEEH 344
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
TV + NYRKD + FWN + I+P+R+ G V+
Sbjct: 345 VTVELRNYRKDGTEFWNRVRIAPVRDDDGTVV 376
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P ITDP + +P+++A+ + ++G+S E++G+N RM QG T + +
Sbjct: 276 AIDEAPVGVVITDPDQTDNPLIYANDHYRDLTGYSLPELLGKNCRMLQGENTEPEPVAAM 335
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
R+AI E + V L NY+KDGT FW +++ V +DG ++V Q I +RK
Sbjct: 336 RDAIDTEEHVTVELRNYRKDGTEFWNRVRIAPVR-DDDGTVVNYVGFQQDITARKQ 390
>gi|303275956|ref|XP_003057272.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461624|gb|EEH58917.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 110
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 58/96 (60%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+++ + D LPD P++YA+ F +TGY E +G NCRFL G DT+ L I++SI
Sbjct: 4 LQEGVTIADFSLPDQPLIYANHGFELITGYSIEETIGHNCRFLQGPDTEPEKLKIIRKSI 63
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
Q C V + NYRK+ F N L ++PIR A GKV
Sbjct: 64 NAGQPCVVELQNYRKNGERFVNSLSLTPIRTAEGKV 99
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
+D L + TI D S+ P+++A+ GF ++G+S E IG N R QGP T + IR
Sbjct: 1 MDSLQEGVTIADFSLPDQPLIYANHGFELITGYSIEETIGHNCRFLQGPDTEPEKLKIIR 60
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
++I +P V L NY+K+G F ++ + E G+ TH+V +Q
Sbjct: 61 KSINAGQPCVVELQNYRKNGERFVNSLSLTPIRTAE-GKVTHYVGIQ 106
>gi|172038851|ref|YP_001805352.1| two-component response regulator [Cyanothece sp. ATCC 51142]
gi|354556166|ref|ZP_08975463.1| response regulator receiver modulated diguanylate cyclase
[Cyanothece sp. ATCC 51472]
gi|171700305|gb|ACB53286.1| two-component response regulator [Cyanothece sp. ATCC 51142]
gi|353551870|gb|EHC21269.1| response regulator receiver modulated diguanylate cyclase
[Cyanothece sp. ATCC 51472]
Length = 483
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 60/104 (57%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
LY ++ S V+ D D P++Y + F +TGY EV G+NCRFL D L
Sbjct: 166 LYEAIAATNNSIVITDATASDYPIIYVNPGFETMTGYSLEEVTGKNCRFLQESDRQQPQL 225
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+I+ +Q Q C V + NYRKD S FWN + +SPI++ SGK++
Sbjct: 226 EEIRHCLQQGQPCHVTLRNYRKDGSLFWNEMSLSPIKDESGKII 269
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 81/152 (53%), Gaps = 6/152 (3%)
Query: 1 MDSQLGLIE--QSFNNRYTL---WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSG 55
++ +L LIE Q FN + L ++EA+ +S ITD + S +PI++ + GF M+G
Sbjct: 142 LEQKLKLIEVSQQFNQKIPLESYLLYEAIAATNNSIVITDATASDYPIIYVNPGFETMTG 201
Query: 56 FSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLV 115
+S E+ G+N R Q + + EIR +++ +P V L NY+KDG+ FW +S +
Sbjct: 202 YSLEEVTGKNCRFLQESDRQQPQLEEIRHCLQQGQPCHVTLRNYRKDGSLFWNEMSLSPI 261
Query: 116 FGKEDGRATHFVAVQVPIVSRKHMRNSGMSYS 147
E G+ +++AVQ + +K Y
Sbjct: 262 -KDESGKIIYYLAVQTDVTDKKRANKEQQRYE 292
>gi|157693427|ref|YP_001487889.1| hypothetical protein BPUM_2671 [Bacillus pumilus SAFR-032]
gi|157682185|gb|ABV63329.1| hypothetical protein BPUM_2671 [Bacillus pumilus SAFR-032]
Length = 267
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD ITDPS+ +PI++ + GF M+G+ EI+GRN R QG T+++ +
Sbjct: 16 IKKALDHARIGVVITDPSLEDNPIIYVNHGFTHMTGYKPDEILGRNCRFLQGKDTDQKQL 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
IR+ I+ + PI L NYKKDGT FW + ++ ++D + T F+ Q I +K
Sbjct: 76 DLIRQGIQNKTPITTQLKNYKKDGTFFWNELNIDPLYIEQDDK-TFFIGFQKDITKQK 132
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 58/93 (62%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + V+ DP L D P++Y + F +TGY +E++G+NCRFL G DTD L I
Sbjct: 19 ALDHARIGVVITDPSLEDNPIIYVNHGFTHMTGYKPDEILGRNCRFLQGKDTDQKQLDLI 78
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
++ IQ + T ++ NY+KD + FWN L+I P+
Sbjct: 79 RQGIQNKTPITTQLKNYKKDGTFFWNELNIDPL 111
>gi|452752745|ref|ZP_21952485.1| Sensory box histidine kinase [alpha proteobacterium JLT2015]
gi|451959817|gb|EMD82233.1| Sensory box histidine kinase [alpha proteobacterium JLT2015]
Length = 345
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+ LP + TI++P I +P+V+ S F +++G+++ +GRN R QG T+ + I
Sbjct: 25 AISVLPFALTISNPRIDDNPLVYVSPAFCRITGYAKESCVGRNCRFLQGANTHPDAVAAI 84
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
RE I +ER + V+LLNY+ DGT FW ++ +F +DG +F+ +Q
Sbjct: 85 REGIEKEREVNVDLLNYRADGTEFWNRLLLAPLF-DDDGELAYFMGIQ 131
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 58/93 (62%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
+ + +P + D P+VY S AF ++TGY + VG+NCRFL G +T + I+E I+ E
Sbjct: 32 ALTISNPRIDDNPLVYVSPAFCRITGYAKESCVGRNCRFLQGANTHPDAVAAIREGIEKE 91
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ V +LNYR D + FWN L ++P+ + G++
Sbjct: 92 REVNVDLLNYRADGTEFWNRLLLAPLFDDDGEL 124
>gi|448689879|ref|ZP_21695463.1| HTR-like protein [Haloarcula japonica DSM 6131]
gi|445778150|gb|EMA29110.1| HTR-like protein [Haloarcula japonica DSM 6131]
Length = 599
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D+ P TITDP +PIV+ + F +++G+SR ++GRN R QG T I E+
Sbjct: 278 AMDQTPIGITITDPQQPDNPIVYVNDSFTELTGYSRESVLGRNCRFLQGEATRDEPIAEL 337
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
AI E P+ V L NY+++G FW ++ +DG HFV Q + +R+ +
Sbjct: 338 ASAIEAEEPVSVELRNYREEGELFWNRVTVA-PLTDDDGEVEHFVGFQEDVTARREL 393
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 58/92 (63%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ DP PD P+VY +D+F +LTGY R V+G+NCRFL G T + ++ +I+ E+
Sbjct: 286 ITITDPQQPDNPIVYVNDSFTELTGYSRESVLGRNCRFLQGEATRDEPIAELASAIEAEE 345
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+V + NYR++ FWN + ++P+ + G+V
Sbjct: 346 PVSVELRNYREEGELFWNRVTVAPLTDDDGEV 377
>gi|440228645|ref|YP_007335729.1| two-component sensor histidine kinase protein [Rhizobium tropici
CIAT 899]
gi|440040353|gb|AGB73183.1| two-component sensor histidine kinase protein [Rhizobium tropici
CIAT 899]
Length = 368
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 70/105 (66%), Gaps = 1/105 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP+ +PI+F + F +++G+S E+IGRN R+ QGP T+R T+ +R+A+ R +
Sbjct: 40 ITDPNQHDNPIIFCNGAFERLTGYSSDELIGRNCRILQGPETSRDTVAVVRDAVAGGRSV 99
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
V++LNYKKDG+ FW ++ V+ ++ G+ T+F A Q+ + K
Sbjct: 100 SVDILNYKKDGSAFWNALFINPVWDRQ-GQITYFFASQLDFTNIK 143
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 63/95 (66%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ DP+ D P+++ + AF +LTGY +E++G+NCR L G +T + +++++
Sbjct: 35 RMPMIITDPNQHDNPIIFCNGAFERLTGYSSDELIGRNCRILQGPETSRDTVAVVRDAVA 94
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
++ +V ILNY+KD S+FWN L I+P+ + G++
Sbjct: 95 GGRSVSVDILNYKKDGSAFWNALFINPVWDRQGQI 129
>gi|254410456|ref|ZP_05024235.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196182662|gb|EDX77647.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 2020
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 61/92 (66%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ DP++PD P+++ + F ++TGY EV+G+NCRFL G + L ++K +++ EQ
Sbjct: 338 ILITDPNVPDNPIIFVNPGFERITGYSAQEVLGKNCRFLQGDNQQQPGLDKLKAALKNEQ 397
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
C V + N RKD + FWN L ISPIR+ GK+
Sbjct: 398 DCHVILQNTRKDGTRFWNELSISPIRDRHGKL 429
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP++ +PI+F + GF +++G+S E++G+N R QG + + +++ A++ E+
Sbjct: 340 ITDPNVPDNPIIFVNPGFERITGYSAQEVLGKNCRFLQGDNQQQPGLDKLKAALKNEQDC 399
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
V L N +KDGT FW +S + + G+ TH++ +Q I R+
Sbjct: 400 HVILQNTRKDGTRFWNELSISPIRDRH-GKLTHYIGIQTDISERRQ 444
>gi|157835749|pdb|2PR5|A Chain A, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (dark Structure)
gi|157835750|pdb|2PR5|B Chain B, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (dark Structure)
gi|157835751|pdb|2PR6|A Chain A, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (light Structure)
gi|157835752|pdb|2PR6|B Chain B, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (light Structure)
Length = 132
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 61/93 (65%)
Query: 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIK 306
L ++ V+ DP L D P+VY + F+++TGY+ E++G+NCRFL G TD + I+
Sbjct: 5 LDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIR 64
Query: 307 ESIQTEQACTVRILNYRKDKSSFWNLLHISPIR 339
++Q ++ TV+I NY+KD + FWN L+I P+
Sbjct: 65 TALQNKEPVTVQIQNYKKDGTMFWNELNIDPME 97
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
LD + ITDP++ +PIV+ ++GF++M+G+ EI+G+N R QG T+ + IR
Sbjct: 5 LDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIR 64
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
A++ + P+ V + NYKKDGT FW + + E T+FV +Q I +K
Sbjct: 65 TALQNKEPVTVQIQNYKKDGTMFWNELNIDPM---EIEDKTYFVGIQNDITKQK 115
>gi|149376152|ref|ZP_01893917.1| Two-component response regulator [Marinobacter algicola DG893]
gi|149359557|gb|EDM48016.1| Two-component response regulator [Marinobacter algicola DG893]
Length = 858
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 57/90 (63%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+++D PDMP+VYA+ AF ++TGY +EV+G NCRFL G +T L I++ + +
Sbjct: 313 MLMVDARSPDMPVVYANPAFTEMTGYSYDEVMGSNCRFLQGEETALEALETIRQGLHHQT 372
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASG 343
V ++NYRKD + FWN L ISP+ G
Sbjct: 373 EVNVELINYRKDGTPFWNHLRISPVFGNDG 402
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 79/162 (48%), Gaps = 9/162 (5%)
Query: 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR 87
P+ + D P+V+A+ F +M+G+S E++G N R QG T + IR+ +
Sbjct: 310 PNGMLMVDARSPDMPVVYANPAFTEMTGYSYDEVMGSNCRFLQGEETALEALETIRQGLH 369
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYS 147
+ + V L+NY+KDGTPFW ++S VFG DG THF+ Q + H R +
Sbjct: 370 HQTEVNVELINYRKDGTPFWNHLRISPVFGN-DGLCTHFIGTQQDVT---HQREQEAQIT 425
Query: 148 EDGGGSRLREIVFGSCRREVCSDSL-LDLDR----VLALDSD 184
L + G +E D+L LD R VL LD D
Sbjct: 426 YQATHDLLTGLPNGVSFQETLHDALILDGGRGALAVLYLDLD 467
>gi|418031775|ref|ZP_12670258.1| blue light GTP-binding receptor [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|351470638|gb|EHA30759.1| blue light GTP-binding receptor [Bacillus subtilis subsp. subtilis
str. SC-8]
Length = 261
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 62/94 (65%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L ++ V+ DP L D P++Y + F+++TGY+ E++G+NCRFL G TD + I
Sbjct: 19 ALDHVRVGVVITDPALEDNPIIYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNI 78
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIR 339
+ ++Q ++ TV+I NY+KD + FWN L+I P+
Sbjct: 79 RTALQNKEPVTVQIQNYKKDGTMFWNELNIDPME 112
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD + ITDP++ +PI++ ++GF++M+G+ EI+G+N R QG T+ +
Sbjct: 16 IKKALDHVRVGVVITDPALEDNPIIYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR A++ + P+ V + NYKKDGT FW + + E T+FV +Q I +K
Sbjct: 76 DNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPM---EIEDKTYFVGIQKDITKQKE 131
>gi|237757476|gb|ACR16779.1| FMN-based fluorescent protein CaFbFP [synthetic construct]
Length = 278
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD + ITDP++ +PIV+ ++GF++M+G+ EI+G+N R QG T+ +
Sbjct: 16 IKKALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNARFLQGKHTDPAEV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR A++ + P+ V + NYKKDGT FW + + E T+FV +Q I +K
Sbjct: 76 DNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPM---EIEDKTYFVGIQNDITKQKE 131
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD + ITDP++ +PIV+ ++GF++M+G+ EI+G+N R QG T+ +
Sbjct: 155 IKKALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNARFLQGKHTDPAEV 214
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR A++ + P+ V + NYKKDGT FW + + E T+FV +Q I +K
Sbjct: 215 DNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPM---EIEDKTYFVGIQNDITKQKE 270
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 81/150 (54%), Gaps = 4/150 (2%)
Query: 191 EDSCEASDLEKRKAATAIDNILSVLTHYSQLTGR-LVCGKRCSLPGMGFISSSLYISLGR 249
E + + ++E + I N ++ Y +L + + +PG + +L
Sbjct: 105 ELNIDPMEIEDKTYFVGIQNDITKQKEYEKLLELGMASFQSFGIPGQLEVIKK---ALDH 161
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
++ V+ DP L D P+VY + F+++TGY+ E++G+N RFL G TD + I+ ++
Sbjct: 162 VRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNARFLQGKHTDPAEVDNIRTAL 221
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIR 339
Q ++ TV+I NY+KD + FWN L+I P+
Sbjct: 222 QNKEPVTVQIQNYKKDGTMFWNELNIDPME 251
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 61/94 (64%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L ++ V+ DP L D P+VY + F+++TGY+ E++G+N RFL G TD + I
Sbjct: 19 ALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNARFLQGKHTDPAEVDNI 78
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIR 339
+ ++Q ++ TV+I NY+KD + FWN L+I P+
Sbjct: 79 RTALQNKEPVTVQIQNYKKDGTMFWNELNIDPME 112
>gi|449095476|ref|YP_007427967.1| blue light GTP-binding receptor [Bacillus subtilis XF-1]
gi|449029391|gb|AGE64630.1| blue light GTP-binding receptor [Bacillus subtilis XF-1]
Length = 261
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 61/93 (65%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L ++ V+ DP L D P+VY + F+++TGY+ E++G+NCRFL G TD I
Sbjct: 19 ALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEAENI 78
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
+ ++Q ++ TV+I NY+KD + FWN L+I P+
Sbjct: 79 RTALQNKEPVTVQIQNYKKDGTMFWNELNIDPM 111
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD + ITDP++ +PIV+ ++GF++M+G+ EI+G+N R QG T+
Sbjct: 16 IKKALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEA 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR A++ + P+ V + NYKKDGT FW + + ++ T+FV +Q I +K
Sbjct: 76 ENIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPMVIED---KTYFVGIQKDITKQKE 131
>gi|321312570|ref|YP_004204857.1| blue light GTP-binding receptor [Bacillus subtilis BSn5]
gi|320018844|gb|ADV93830.1| blue light GTP-binding receptor [Bacillus subtilis BSn5]
Length = 261
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 62/94 (65%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L ++ V+ DP L D P++Y + F+++TGY+ E++G+NCRFL G TD + I
Sbjct: 19 ALDHVRVGVVITDPALEDNPIIYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNI 78
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIR 339
+ ++Q ++ TV+I NY+KD + FWN L+I P+
Sbjct: 79 RTALQNKEPVTVQIQNYKKDGTMFWNELNIDPME 112
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD + ITDP++ +PI++ ++GF++M+G+ EI+G+N R QG T+ +
Sbjct: 16 IKKALDHVRVGVVITDPALEDNPIIYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR A++ + P+ V + NYKKDGT FW + + E T+FV +Q I +K
Sbjct: 76 DNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPM---EIEDKTYFVGIQKDITKQKE 131
>gi|299008122|gb|ADJ00051.1| Evoglow [Promoter probe vector pEvoGlowRed]
gi|299008129|gb|ADJ00057.1| Evoglow [Mariner mini-transposon delivery vector pMaGlowRedKm]
gi|299008135|gb|ADJ00062.1| Evoglow [Mariner mini-transposon delivery vector pMaTcGlow]
gi|299008142|gb|ADJ00067.1| Evoglow [Mariner mini-transposon delivery vector pMaGlow]
gi|299008157|gb|ADJ00079.1| Evoglow [Reporter vector pGlowRed]
Length = 143
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD + ITDP++ +PIV+ ++GF++M+G+ EI+G+N R QG T+ +
Sbjct: 16 IKKALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNARFLQGKHTDPAEV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR A++ + P+ V + NYKKDGT FW + + E T+FV +Q I +K
Sbjct: 76 DNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPM---EIEDKTYFVGIQNDITKQKE 131
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 61/94 (64%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L ++ V+ DP L D P+VY + F+++TGY+ E++G+N RFL G TD + I
Sbjct: 19 ALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNARFLQGKHTDPAEVDNI 78
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIR 339
+ ++Q ++ TV+I NY+KD + FWN L+I P+
Sbjct: 79 RTALQNKEPVTVQIQNYKKDGTMFWNELNIDPME 112
>gi|126023750|gb|ABN71355.1| FMN-based fluorescence protein [synthetic construct]
gi|238480383|gb|ACR43777.1| FMN-based fluorescent protein CaFbFP [synthetic construct]
Length = 137
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD + ITDP++ +PIV+ ++GF++M+G+ EI+G+N R QG T+ +
Sbjct: 16 IKKALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNARFLQGKHTDPAEV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR A++ + P+ V + NYKKDGT FW + + E T+FV +Q I +K
Sbjct: 76 DNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPM---EIEDKTYFVGIQNDITKQKE 131
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 61/94 (64%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L ++ V+ DP L D P+VY + F+++TGY+ E++G+N RFL G TD + I
Sbjct: 19 ALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNARFLQGKHTDPAEVDNI 78
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIR 339
+ ++Q ++ TV+I NY+KD + FWN L+I P+
Sbjct: 79 RTALQNKEPVTVQIQNYKKDGTMFWNELNIDPME 112
>gi|336471528|gb|EGO59689.1| hypothetical protein NEUTE1DRAFT_121442 [Neurospora tetrasperma
FGSC 2508]
gi|350292631|gb|EGZ73826.1| hypothetical protein NEUTE2DRAFT_87425, partial [Neurospora
tetrasperma FGSC 2509]
Length = 717
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 69/120 (57%), Gaps = 3/120 (2%)
Query: 219 SQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278
SQL RL + P S Y LG +F L D PD P+VYAS+ FL++ G
Sbjct: 187 SQLANRLRASLSVTQPSSSIPFKSTYPGLG---NAFCLTDSWKPDNPIVYASEGFLRMFG 243
Query: 279 YDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
++R+EV+ +NCRF+ G T+ +++++ +I + T I+NYRKD + FWN L I P+
Sbjct: 244 FERHEVLQRNCRFMQGNSTNGDAVHRMRNAIFMGREHTELIVNYRKDGTPFWNFLFICPL 303
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L ++F +TD +PIV+AS GFL+M GF R E++ RN R QG TN + +R AI
Sbjct: 215 LGNAFCLTDSWKPDNPIVYASEGFLRMFGFERHEVLQRNCRFMQGNSTNGDAVHRMRNAI 274
Query: 87 REERPIEVNLLNYKKDGTPFW-MLFKMSLVFGKEDGRATHFVAVQVPI 133
R ++NY+KDGTPFW LF LV EDG + + Q+ I
Sbjct: 275 FMGREHTELIVNYRKDGTPFWNFLFICPLV---EDGIVRYCLGGQINI 319
>gi|319954446|ref|YP_004165713.1| multi-sensor signal transduction histidine kinase [Cellulophaga
algicola DSM 14237]
gi|319423106|gb|ADV50215.1| multi-sensor signal transduction histidine kinase [Cellulophaga
algicola DSM 14237]
Length = 1083
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 239 ISSSLYI---SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295
I + LY+ +L ++ D PD P++Y ++AF K+TGY++ E +GQNCRFL G
Sbjct: 376 IENILYVRNRALAATANGIIICDAQQPDFPIIYGNEAFTKITGYEKVEFMGQNCRFLQGD 435
Query: 296 DTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNA 341
DTD + ++ +I+ + C V + NYRKD S FWN + I+ I N
Sbjct: 436 DTDQIEIKKMSAAIKKGEDCRVVLRNYRKDGSLFWNEISITSIYNT 481
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL + I D PI++ + F K++G+ + E +G+N R QG T++ I ++
Sbjct: 386 ALAATANGIIICDAQQPDFPIIYGNEAFTKITGYEKVEFMGQNCRFLQGDDTDQIEIKKM 445
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
AI++ V L NY+KDG+ FW ++ ++ + TH+V VQ + + K
Sbjct: 446 SAAIKKGEDCRVVLRNYRKDGSLFWNEISITSIYNTKK-ILTHYVGVQNDVTAHK 499
>gi|333894329|ref|YP_004468204.1| multi-sensor hybrid histidine kinase [Alteromonas sp. SN2]
gi|332994347|gb|AEF04402.1| multi-sensor hybrid histidine kinase [Alteromonas sp. SN2]
Length = 956
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
++ A+DE S I D +G PI++ + F +++G+++ +IIGRN R QG T+ T
Sbjct: 440 LNHAMDEATVSIVIADIKRTGQPIIYVNNAFNRLTGYNKEDIIGRNCRFMQGEGTDSNTT 499
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR AI + PIE +LNY+KDG F+ K+ L K DG TH++ Q + ++
Sbjct: 500 ALIRSAIAKREPIETTILNYRKDGASFYN--KLILTPVKSDGEVTHYIGFQQDVTQQRQ 556
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 57/88 (64%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
S V+ D P++Y ++AF +LTGY++ +++G+NCRF+ G TD+ I+ +I
Sbjct: 450 SIVIADIKRTGQPIIYVNNAFNRLTGYNKEDIIGRNCRFMQGEGTDSNTTALIRSAIAKR 509
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRN 340
+ ILNYRKD +SF+N L ++P+++
Sbjct: 510 EPIETTILNYRKDGASFYNKLILTPVKS 537
>gi|194017797|ref|ZP_03056406.1| YtvA [Bacillus pumilus ATCC 7061]
gi|194010449|gb|EDW20022.1| YtvA [Bacillus pumilus ATCC 7061]
Length = 267
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD ITDPS+ +PIV+ + GF M+G+ EI+GRN R QG T+++ +
Sbjct: 16 IKKALDHARIGVVITDPSLEDNPIVYVNHGFTHMTGYKPDEILGRNCRFLQGKDTDQKQL 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR I+ + PI L NYKKDGT FW + ++ ++D + T F+ Q I +K
Sbjct: 76 DLIRHGIQNKTPITTQLKNYKKDGTFFWNELNIDPLYIEQDDK-TFFIGFQKDITKQKE 133
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 57/93 (61%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + V+ DP L D P+VY + F +TGY +E++G+NCRFL G DTD L I
Sbjct: 19 ALDHARIGVVITDPSLEDNPIVYVNHGFTHMTGYKPDEILGRNCRFLQGKDTDQKQLDLI 78
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
+ IQ + T ++ NY+KD + FWN L+I P+
Sbjct: 79 RHGIQNKTPITTQLKNYKKDGTFFWNELNIDPL 111
>gi|429506317|ref|YP_007187501.1| sensory transduction histidine kinase [Bacillus amyloliquefaciens
subsp. plantarum AS43.3]
gi|429487907|gb|AFZ91831.1| sensory transduction histidine kinase [Bacillus amyloliquefaciens
subsp. plantarum AS43.3]
Length = 261
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD ITDPS+ +PI++ ++GF+ M+G+S EI+G+N R Q T+R+ +
Sbjct: 16 IKKALDHARIGVVITDPSLEDNPIIYTNQGFMDMTGYSSEEILGKNCRFLQSKETDRQQV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+IR+++ ++ I V L N KKDGTPFW + ++ ++ +FV Q I +K
Sbjct: 76 AKIRKSLNQKEKITVRLKNVKKDGTPFWNELNIDPLYVED---KLYFVGFQKDITEQKE 131
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 59/93 (63%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + V+ DP L D P++Y + F+ +TGY E++G+NCRFL +TD + +I
Sbjct: 19 ALDHARIGVVITDPSLEDNPIIYTNQGFMDMTGYSSEEILGKNCRFLQSKETDRQQVAKI 78
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
++S+ ++ TVR+ N +KD + FWN L+I P+
Sbjct: 79 RKSLNQKEKITVRLKNVKKDGTPFWNELNIDPL 111
>gi|428204021|ref|YP_007082610.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Pleurocapsa sp. PCC 7327]
gi|427981453|gb|AFY79053.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Pleurocapsa sp. PCC 7327]
Length = 479
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 59/92 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ D + P P++Y + F ++TGY E +G+NCRFL G D L I+++I+ ++
Sbjct: 176 IVITDANAPYNPVIYVNPGFERMTGYSSAEAIGKNCRFLQGEDRKQPALEIIRQAIRQQK 235
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
C V + NYRKD + FWN + ISPIR+ +GKV
Sbjct: 236 ECRVTVRNYRKDGTLFWNDISISPIRDEAGKV 267
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+ P+ ITD + +P+++ + GF +M+G+S AE IG+N R QG + + I
Sbjct: 168 AIAATPNGIVITDANAPYNPVIYVNPGFERMTGYSSAEAIGKNCRFLQGEDRKQPALEII 227
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R+AIR+++ V + NY+KDGT FW +S + E G+ TH++AVQ I K +
Sbjct: 228 RQAIRQQKECRVTVRNYRKDGTLFWNDISISPI-RDEAGKVTHYIAVQTNITEYKRVEEE 286
Query: 143 GMSYS 147
Y
Sbjct: 287 RQRYQ 291
>gi|452856665|ref|YP_007498348.1| blue light GTP-binding receptor [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|452080925|emb|CCP22692.1| blue light GTP-binding receptor [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 261
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD ITDPS+ +PI++ ++GF+ M+G+S EI+G+N R Q T+R+ +
Sbjct: 16 IKKALDHARIGVVITDPSLEDNPIIYTNQGFMDMTGYSSEEILGKNCRFLQSKETDRQQV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+IR+++ ++ I V L N KKDGTPFW + ++ ++ +FV Q I +K
Sbjct: 76 AKIRKSLNQKEKITVRLKNIKKDGTPFWNELNIDPLYVED---KLYFVGFQKDITEQKE 131
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 59/93 (63%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + V+ DP L D P++Y + F+ +TGY E++G+NCRFL +TD + +I
Sbjct: 19 ALDHARIGVVITDPSLEDNPIIYTNQGFMDMTGYSSEEILGKNCRFLQSKETDRQQVAKI 78
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
++S+ ++ TVR+ N +KD + FWN L+I P+
Sbjct: 79 RKSLNQKEKITVRLKNIKKDGTPFWNELNIDPL 111
>gi|385265922|ref|ZP_10044009.1| PAS fold protein [Bacillus sp. 5B6]
gi|385150418|gb|EIF14355.1| PAS fold protein [Bacillus sp. 5B6]
Length = 261
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD ITDPS+ +PI++ ++GF+ M+G+S EI+G+N R Q T+R+ +
Sbjct: 16 IKKALDHARIGVVITDPSLEDNPIIYTNQGFMDMTGYSSEEILGKNCRFLQSKETDRQEV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+IR+++ ++ I V L N KKDGTPFW + ++ ++ +FV Q I +K
Sbjct: 76 AKIRKSLNQKEKITVRLKNVKKDGTPFWNELNIDPLYVED---KLYFVGFQKDITEQKE 131
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 59/93 (63%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + V+ DP L D P++Y + F+ +TGY E++G+NCRFL +TD + +I
Sbjct: 19 ALDHARIGVVITDPSLEDNPIIYTNQGFMDMTGYSSEEILGKNCRFLQSKETDRQEVAKI 78
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
++S+ ++ TVR+ N +KD + FWN L+I P+
Sbjct: 79 RKSLNQKEKITVRLKNVKKDGTPFWNELNIDPL 111
>gi|302896206|ref|XP_003046983.1| hypothetical protein NECHADRAFT_95335 [Nectria haematococca mpVI
77-13-4]
gi|256727911|gb|EEU41270.1| hypothetical protein NECHADRAFT_95335 [Nectria haematococca mpVI
77-13-4]
Length = 656
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 59/96 (61%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+K SF L DP P+ +ASD F LTGY RNEV+ NCR L G TD + +++ +I
Sbjct: 283 LKGSFCLSDPSRSGNPITFASDEFEDLTGYSRNEVLAHNCRLLQGPQTDRETISRMRSAI 342
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
CT ILN++KD + FW+LL + P+ + +GK+
Sbjct: 343 WRNDECTELILNFKKDGTPFWDLLFLCPLLDTAGKL 378
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 66/107 (61%), Gaps = 3/107 (2%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SF ++DPS SG+PI FAS F ++G+SR E++ N R+ QGP+T+R TI +R AI
Sbjct: 286 SFCLSDPSRSGNPITFASDEFEDLTGYSRNEVLAHNCRLLQGPQTDRETISRMRSAIWRN 345
Query: 90 RPIEVNLLNYKKDGTPFW-MLFKMSLVFGKEDGRATHFVAVQVPIVS 135
+LN+KKDGTPFW +LF L+ G+ ++ Q+ + S
Sbjct: 346 DECTELILNFKKDGTPFWDLLFLCPLL--DTAGKLKFYLGAQIDVSS 390
>gi|448311685|ref|ZP_21501439.1| HTR-like protein [Natronolimnobius innermongolicus JCM 12255]
gi|445603716|gb|ELY57673.1| HTR-like protein [Natronolimnobius innermongolicus JCM 12255]
Length = 655
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 60/92 (65%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
L DPH D P++YA+D F ++GY+R+EV+G+NCRFL G T + ++ +++ +
Sbjct: 205 ITLTDPHAEDNPIIYANDEFTSISGYERDEVLGRNCRFLQGEQTRDEPVANLRAAVENRE 264
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ TV + NYR D + FWN + I+P+ + +G +
Sbjct: 265 SVTVELRNYRADGTEFWNRVRIAPLFDDNGDI 296
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P T+TDP +PI++A+ F +SG+ R E++GRN R QG +T + +
Sbjct: 197 AMNEAPVGITLTDPHAEDNPIIYANDEFTSISGYERDEVLGRNCRFLQGEQTRDEPVANL 256
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R A+ + V L NY+ DGT FW +++ +F ++G +FV Q + +K
Sbjct: 257 RAAVENRESVTVELRNYRADGTEFWNRVRIAPLF-DDNGDIEYFVGFQDDVTKKK 310
>gi|397642952|gb|EJK75561.1| hypothetical protein THAOC_02710 [Thalassiosira oceanica]
Length = 406
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 62/104 (59%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L +Q+F + DP LPD P+VY S FL LTGY ++V+G+NCRFL G TD +
Sbjct: 275 LMSALSGSQQNFAISDPSLPDNPIVYVSQGFLDLTGYSLDQVLGRNCRFLQGPGTDQAAV 334
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
I+ + +V +LNY+ D + FWN ++ +R+A V+
Sbjct: 335 DVIRRGVMEGTDTSVCLLNYKADGTPFWNQFFVAALRDAENNVV 378
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 78/142 (54%), Gaps = 6/142 (4%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAE 60
M S G ++ Y L AL +F I+DPS+ +PIV+ S+GFL ++G+S +
Sbjct: 258 MPSGFGPVKTLMEPDYRLM--SALSGSQQNFAISDPSLPDNPIVYVSQGFLDLTGYSLDQ 315
Query: 61 IIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED 120
++GRN R QGP T++ + IR + E V LLNYK DGTPFW F ++ + E+
Sbjct: 316 VLGRNCRFLQGPGTDQAAVDVIRRGVMEGTDTSVCLLNYKADGTPFWNQFFVAALRDAEN 375
Query: 121 GRATHFVAVQVPI---VSRKHM 139
+FV VQ + V KH+
Sbjct: 376 N-VVNFVGVQCEVSKAVVEKHI 396
>gi|384266573|ref|YP_005422280.1| Blue-light photoreceptor [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387899625|ref|YP_006329921.1| sensory transduction histidine kinase [Bacillus amyloliquefaciens
Y2]
gi|380499926|emb|CCG50964.1| Blue-light photoreceptor [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387173735|gb|AFJ63196.1| sensory transduction histidine kinase [Bacillus amyloliquefaciens
Y2]
Length = 276
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD ITDPS+ +PI++ ++GF+ M+G+S EI+G+N R Q T+R+ +
Sbjct: 31 IKKALDHARIGVVITDPSLEDNPIIYTNQGFMDMTGYSSEEILGKNCRFLQSKETDRQQV 90
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+IR+++ ++ I V L N KKDGTPFW + ++ ++ +FV Q I +K
Sbjct: 91 AKIRKSLNQKEKITVRLKNVKKDGTPFWNELNIDPLYVED---KLYFVGFQKDITEQKE 146
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 56/84 (66%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
V+ DP L D P++Y + F+ +TGY E++G+NCRFL +TD + +I++S+ ++
Sbjct: 43 VITDPSLEDNPIIYTNQGFMDMTGYSSEEILGKNCRFLQSKETDRQQVAKIRKSLNQKEK 102
Query: 315 CTVRILNYRKDKSSFWNLLHISPI 338
TVR+ N +KD + FWN L+I P+
Sbjct: 103 ITVRLKNVKKDGTPFWNELNIDPL 126
>gi|188583707|ref|YP_001927152.1| signal transduction histidine kinase [Methylobacterium populi
BJ001]
gi|179347205|gb|ACB82617.1| signal transduction histidine kinase [Methylobacterium populi
BJ001]
Length = 366
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 61/93 (65%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ DP D P+V+A+ AFL LTGY R E+ G NCR L G TD VL +++ ++ +
Sbjct: 30 MVVTDPRRGDNPVVWANGAFLALTGYGREELYGHNCRMLQGPLTDEAVLQRMRVALAAGR 89
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+LNYRKD ++FWN + I+P+R+ +G+V+
Sbjct: 90 PFEGELLNYRKDGTTFWNGMTINPVRDEAGEVV 122
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A + P +TDP +P+V+A+ FL ++G+ R E+ G N RM QGP T+ + +
Sbjct: 22 AFEASPTPMVVTDPRRGDNPVVWANGAFLALTGYGREELYGHNCRMLQGPLTDEAVLQRM 81
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R A+ RP E LLNY+KDGT FW ++ V E G F + Q + KH
Sbjct: 82 RVALAAGRPFEGELLNYRKDGTTFWNGMTINPVR-DEAGEVVFFFSAQADMTD-KHRLEV 139
Query: 143 GMSYSEDG 150
M + D
Sbjct: 140 AMRDANDA 147
>gi|448428454|ref|ZP_21584266.1| bacterio-opsin activator [Halorubrum terrestre JCM 10247]
gi|448507510|ref|ZP_21615021.1| bacterio-opsin activator [Halorubrum distributum JCM 9100]
gi|448523274|ref|ZP_21618627.1| bacterio-opsin activator [Halorubrum distributum JCM 10118]
gi|445676419|gb|ELZ28941.1| bacterio-opsin activator [Halorubrum terrestre JCM 10247]
gi|445698465|gb|ELZ50509.1| bacterio-opsin activator [Halorubrum distributum JCM 9100]
gi|445701673|gb|ELZ53649.1| bacterio-opsin activator [Halorubrum distributum JCM 10118]
Length = 667
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V A+++ P +I+DP + +P+V+ + + + +G+ E +GRN R QGP T+ T+
Sbjct: 142 VTRAVEDAPIGISISDPDLPDYPLVYVNNAWEEHTGYPVEEALGRNPRFLQGPGTDPETV 201
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
EI +AI E V + NY++DGTPFW ++ ++ EDG H+V Q I RK
Sbjct: 202 EEIGDAIANEEEATVEIRNYRRDGTPFWNELTVAPIY-DEDGDLAHYVGFQNDISDRKE 259
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 56/88 (63%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTV 317
DP LPD P+VY ++A+ + TGY E +G+N RFL G TD + +I ++I E+ TV
Sbjct: 157 DPDLPDYPLVYVNNAWEEHTGYPVEEALGRNPRFLQGPGTDPETVEEIGDAIANEEEATV 216
Query: 318 RILNYRKDKSSFWNLLHISPIRNASGKV 345
I NYR+D + FWN L ++PI + G +
Sbjct: 217 EIRNYRRDGTPFWNELTVAPIYDEDGDL 244
>gi|223996948|ref|XP_002288147.1| hypothetical protein THAPSDRAFT_33193 [Thalassiosira pseudonana
CCMP1335]
gi|220975255|gb|EED93583.1| hypothetical protein THAPSDRAFT_33193 [Thalassiosira pseudonana
CCMP1335]
Length = 113
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 61/93 (65%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
SF + DPH PD P++Y S F KLTGYD +VVG+NCRFL G +T + +I ++++ E
Sbjct: 11 SFCITDPHQPDNPVIYISGGFCKLTGYDFEDVVGKNCRFLQGEETSREDIKRISDALKEE 70
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ C+V +LNY+K+ F N ++ +R S ++
Sbjct: 71 KECSVNLLNYKKNGEKFVNEFFLTQLRTPSQEL 103
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 24 LDELPD---SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
L+ PD SF ITDP +P+++ S GF K++G+ +++G+N R QG T+R I
Sbjct: 2 LNASPDDSVSFCITDPHQPDNPVIYISGGFCKLTGYDFEDVVGKNCRFLQGEETSREDIK 61
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
I +A++EE+ VNLLNYKK+G F F ++ + A +F+ +Q +
Sbjct: 62 RISDALKEEKECSVNLLNYKKNGEKFVNEFFLTQLRTPSQELA-YFIGIQAAV 113
>gi|448481617|ref|ZP_21604968.1| bacterio-opsin activator [Halorubrum arcis JCM 13916]
gi|445821870|gb|EMA71654.1| bacterio-opsin activator [Halorubrum arcis JCM 13916]
Length = 667
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V A+++ P +I+DP + +P+V+ + + + +G+ E +GRN R QGP T+ T+
Sbjct: 142 VTRAVEDAPIGISISDPDLPDYPLVYVNNAWEEHTGYPVEEALGRNPRFLQGPGTDPETV 201
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
EI +AI E V + NY++DGTPFW ++ ++ EDG H+V Q I RK
Sbjct: 202 EEIGDAIANEEEATVEIRNYRRDGTPFWNELTVAPIY-DEDGDLAHYVGFQNDISDRKE 259
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 56/88 (63%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTV 317
DP LPD P+VY ++A+ + TGY E +G+N RFL G TD + +I ++I E+ TV
Sbjct: 157 DPDLPDYPLVYVNNAWEEHTGYPVEEALGRNPRFLQGPGTDPETVEEIGDAIANEEEATV 216
Query: 318 RILNYRKDKSSFWNLLHISPIRNASGKV 345
I NYR+D + FWN L ++PI + G +
Sbjct: 217 EIRNYRRDGTPFWNELTVAPIYDEDGDL 244
>gi|380476506|emb|CCF44677.1| hypothetical protein CH063_13997, partial [Colletotrichum
higginsianum]
Length = 561
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 61/96 (63%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+ +SF L D PD P+V SDAF+ +TGY + E V +NCRFL G TD + ++++S+
Sbjct: 268 LAESFCLADALGPDYPVVAVSDAFVAVTGYPKTEAVSRNCRFLQGSLTDRDAVKRLRDSV 327
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
E+ +LNY +D + +WNLL P+ +ASGK+
Sbjct: 328 AREEESLELVLNYHRDGTPYWNLLFTCPLTDASGKL 363
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 62/107 (57%), Gaps = 5/107 (4%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L +SF + D +P+V S F+ ++G+ + E + RN R QG T+R + +R+++
Sbjct: 268 LAESFCLADALGPDYPVVAVSDAFVAVTGYPKTEAVSRNCRFLQGSLTDRDAVKRLRDSV 327
Query: 87 -REERPIEVNLLNYKKDGTPFW-MLFKMSLVFGKEDGRATHFVAVQV 131
REE +E+ +LNY +DGTP+W +LF L G+ +++ QV
Sbjct: 328 AREEESLEL-VLNYHRDGTPYWNLLFTCPLT--DASGKLRYYLGGQV 371
>gi|376003286|ref|ZP_09781099.1| Response regulator receiver modulated diguanylate cyclase
[Arthrospira sp. PCC 8005]
gi|375328316|emb|CCE16852.1| Response regulator receiver modulated diguanylate cyclase
[Arthrospira sp. PCC 8005]
Length = 452
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 60/100 (60%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
++ + V+ DP+ PD P++Y + + +LTGY NEV+G NCRFL D L I
Sbjct: 172 AIAATQNGVVITDPNQPDNPIIYVNAGWERLTGYAANEVIGSNCRFLQVNQRDQPALDDI 231
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +I + C V + NYR+D + FWN L ISP+RN G++
Sbjct: 232 RRAIAEAEECRVILKNYRRDGTIFWNELFISPVRNEPGEL 271
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +A+ + ITDP+ +PI++ + G+ +++G++ E+IG N R Q + ++ +
Sbjct: 169 LEKAIAATQNGVVITDPNQPDNPIIYVNAGWERLTGYAANEVIGSNCRFLQVNQRDQPAL 228
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+IR AI E V L NY++DGT FW +S V E G T+F+ +Q + RK
Sbjct: 229 DDIRRAIAEAEECRVILKNYRRDGTIFWNELFISPV-RNEPGELTNFIGIQTDVTERK 285
>gi|448488460|ref|ZP_21607296.1| bacterio-opsin activator [Halorubrum californiensis DSM 19288]
gi|445696150|gb|ELZ48243.1| bacterio-opsin activator [Halorubrum californiensis DSM 19288]
Length = 667
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V A+++ P +I+DP +S +P+V+ + + + +G+ E +GRN R QGP T T+
Sbjct: 142 VRRAVEDAPIGISISDPDLSDYPLVYVNDAWGEHTGYPVEEALGRNPRFLQGPETAPETV 201
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
E+ EAI E + V + NY++DGTPFW ++ ++ E G H+V Q I RK
Sbjct: 202 EEVGEAIANEEEVTVEIRNYRRDGTPFWNELTVAPIY-DEAGDLAHYVGFQNDISDRKE 259
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 55/86 (63%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTV 317
DP L D P+VY +DA+ + TGY E +G+N RFL G +T + ++ E+I E+ TV
Sbjct: 157 DPDLSDYPLVYVNDAWGEHTGYPVEEALGRNPRFLQGPETAPETVEEVGEAIANEEEVTV 216
Query: 318 RILNYRKDKSSFWNLLHISPIRNASG 343
I NYR+D + FWN L ++PI + +G
Sbjct: 217 EIRNYRRDGTPFWNELTVAPIYDEAG 242
>gi|448450276|ref|ZP_21592175.1| bacterio-opsin activator [Halorubrum litoreum JCM 13561]
gi|445812128|gb|EMA62124.1| bacterio-opsin activator [Halorubrum litoreum JCM 13561]
Length = 667
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V A+++ P +I+DP + +P+V+ + + + +G+ E +GRN R QGP T+ T+
Sbjct: 142 VTRAVEDAPIGISISDPDLPDYPLVYVNNAWEEHTGYPVEEALGRNPRFLQGPGTDPETV 201
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
EI +AI E V + NY++DGTPFW ++ ++ EDG H+V Q I RK
Sbjct: 202 EEIGDAIANEEEATVEIRNYRRDGTPFWNELTVAPIY-DEDGDLAHYVGFQNDISDRKE 259
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 56/88 (63%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTV 317
DP LPD P+VY ++A+ + TGY E +G+N RFL G TD + +I ++I E+ TV
Sbjct: 157 DPDLPDYPLVYVNNAWEEHTGYPVEEALGRNPRFLQGPGTDPETVEEIGDAIANEEEATV 216
Query: 318 RILNYRKDKSSFWNLLHISPIRNASGKV 345
I NYR+D + FWN L ++PI + G +
Sbjct: 217 EIRNYRRDGTPFWNELTVAPIYDEDGDL 244
>gi|163744962|ref|ZP_02152322.1| sensory box histidine kinase [Oceanibulbus indolifex HEL-45]
gi|161381780|gb|EDQ06189.1| sensory box histidine kinase [Oceanibulbus indolifex HEL-45]
Length = 354
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 58/90 (64%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315
+ DP LPD P+VY ++AF LTGY +E+VGQNCRFL G +T + ++E + +
Sbjct: 49 ITDPTLPDNPIVYVNEAFTDLTGYTLDEIVGQNCRFLQGPETTRESVDTVREILVDRRVD 108
Query: 316 TVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV I+NYRKD S F N L + PI + +G +
Sbjct: 109 TVEIVNYRKDGSRFLNALQLGPINDEAGNL 138
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 69/127 (54%), Gaps = 1/127 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP++ +PIV+ + F ++G++ EI+G+N R QGP T R ++ +RE + + R
Sbjct: 49 ITDPTLPDNPIVYVNEAFTDLTGYTLDEIVGQNCRFLQGPETTRESVDTVREILVDRRVD 108
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGG 152
V ++NY+KDG+ F ++ + E G +F Q+ + R+ ++D
Sbjct: 109 TVEIVNYRKDGSRFLNALQLGPI-NDEAGNLAYFFGSQLDVSERRQAERERRELADDELL 167
Query: 153 SRLREIV 159
RLR IV
Sbjct: 168 HRLRNIV 174
>gi|448582617|ref|ZP_21646121.1| bacterio-opsin activator [Haloferax gibbonsii ATCC 33959]
gi|445732265|gb|ELZ83848.1| bacterio-opsin activator [Haloferax gibbonsii ATCC 33959]
Length = 658
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 1/116 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+DE P T+ D S+ P+V+ + F M+G+S +GRN R QGP T+ +
Sbjct: 136 EQAIDEAPVGITVADCSLPDRPLVYVNEAFEAMTGYSADAALGRNCRYLQGPNTDPERVA 195
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
E+R AI E V LLNY+++G FW ++ + G DG TH+V Q I R
Sbjct: 196 ELRRAIEAEESASVELLNYRENGETFWNRVDVAPLSGP-DGEVTHYVGFQTDITER 250
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 61/92 (66%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ D LPD P+VY ++AF +TGY + +G+NCR+L G +TD + +++ +I+ E+
Sbjct: 146 ITVADCSLPDRPLVYVNEAFEAMTGYSADAALGRNCRYLQGPNTDPERVAELRRAIEAEE 205
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +V +LNYR++ +FWN + ++P+ G+V
Sbjct: 206 SASVELLNYRENGETFWNRVDVAPLSGPDGEV 237
>gi|423067020|ref|ZP_17055810.1| putative Regulatory components of sensory transduction system
[Arthrospira platensis C1]
gi|406711306|gb|EKD06507.1| putative Regulatory components of sensory transduction system
[Arthrospira platensis C1]
Length = 452
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 60/100 (60%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
++ + V+ DP+ PD P++Y + + +LTGY NEV+G NCRFL D L I
Sbjct: 172 AIAATQNGVVITDPNQPDNPIIYVNAGWERLTGYAANEVIGSNCRFLQVNQRDQPALDDI 231
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +I + C V + NYR+D + FWN L ISP+RN G++
Sbjct: 232 RRAIAEAEECRVILKNYRRDGTIFWNELFISPVRNEPGEL 271
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +A+ + ITDP+ +PI++ + G+ +++G++ E+IG N R Q + ++ +
Sbjct: 169 LEKAIAATQNGVVITDPNQPDNPIIYVNAGWERLTGYAANEVIGSNCRFLQVNQRDQPAL 228
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+IR AI E V L NY++DGT FW +S V E G T+F+ +Q + RK
Sbjct: 229 DDIRRAIAEAEECRVILKNYRRDGTIFWNELFISPV-RNEPGELTNFIGIQTDVTERK 285
>gi|254414962|ref|ZP_05028725.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196178109|gb|EDX73110.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1393
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 81/150 (54%), Gaps = 4/150 (2%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
+QS N Y + A+ + ITDP+ +P+++ + F M+G++ E+IG N R
Sbjct: 572 QQSEANLYLM--QRAIAASNNGVIITDPNQPDNPVIYVNPAFESMTGYTAKEVIGHNCRF 629
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
+Q P N+ + ++ AI+E+R V L NY+KDG+ FW +S VF DG THFV
Sbjct: 630 WQEPDYNQAGVTKLATAIQEQRECHVILQNYRKDGSTFWNELYVSPVFDG-DGYLTHFVG 688
Query: 129 VQVPIVSRKHMRNSGMSYSEDGGGSRLREI 158
+Q I RK + + SE+ S LR +
Sbjct: 689 IQTDITKRKQAEEA-LRQSEEKLDSILRSL 717
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 73/137 (53%), Gaps = 15/137 (10%)
Query: 207 AIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPM 266
A+ N+L++ + Q L +R I++S ++ DP+ PD P+
Sbjct: 560 AVANVLALAIGHQQSEANLYLMQRA-------IAAS--------NNGVIITDPNQPDNPV 604
Query: 267 VYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDK 326
+Y + AF +TGY EV+G NCRF D + + ++ +IQ ++ C V + NYRKD
Sbjct: 605 IYVNPAFESMTGYTAKEVIGHNCRFWQEPDYNQAGVTKLATAIQEQRECHVILQNYRKDG 664
Query: 327 SSFWNLLHISPIRNASG 343
S+FWN L++SP+ + G
Sbjct: 665 STFWNELYVSPVFDGDG 681
>gi|155212693|gb|ABT17414.1| bacterio-opsin activator protein [Halorubrum sp. TP009]
Length = 669
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V A+++ P +I+DP + +P+V+ + + + +G+ E +GRN R QGP T+ T+
Sbjct: 144 VTRAVEDAPIGISISDPDLPDYPLVYVNNAWEEHTGYPVEEALGRNPRFLQGPGTDPETV 203
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
EI +AI E V + NY++DGTPFW ++ ++ EDG H+V Q I RK
Sbjct: 204 EEIGDAIANEEEATVEIRNYRRDGTPFWNELTVAPIY-DEDGDLAHYVGFQNDISDRKE 261
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 56/88 (63%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTV 317
DP LPD P+VY ++A+ + TGY E +G+N RFL G TD + +I ++I E+ TV
Sbjct: 159 DPDLPDYPLVYVNNAWEEHTGYPVEEALGRNPRFLQGPGTDPETVEEIGDAIANEEEATV 218
Query: 318 RILNYRKDKSSFWNLLHISPIRNASGKV 345
I NYR+D + FWN L ++PI + G +
Sbjct: 219 EIRNYRRDGTPFWNELTVAPIYDEDGDL 246
>gi|154687155|ref|YP_001422316.1| hypothetical protein RBAM_027270 [Bacillus amyloliquefaciens FZB42]
gi|394992734|ref|ZP_10385506.1| YtvA [Bacillus sp. 916]
gi|154353006|gb|ABS75085.1| YtvA [Bacillus amyloliquefaciens FZB42]
gi|393806394|gb|EJD67741.1| YtvA [Bacillus sp. 916]
Length = 261
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD ITDPS+ +PI++ ++GF+ M+G+S EI+G+N R Q T+R+ +
Sbjct: 16 IKKALDHARIGVVITDPSLEDNPIIYTNQGFMDMTGYSSEEILGKNCRFLQSKETDRQQV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+IR+++ ++ I V L N KKDGTPFW + ++ ++ +FV Q I +K
Sbjct: 76 AKIRKSLTQKEKITVRLKNVKKDGTPFWNELNIDPLYVED---KLYFVGFQKDITEQKE 131
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 59/93 (63%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + V+ DP L D P++Y + F+ +TGY E++G+NCRFL +TD + +I
Sbjct: 19 ALDHARIGVVITDPSLEDNPIIYTNQGFMDMTGYSSEEILGKNCRFLQSKETDRQQVAKI 78
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
++S+ ++ TVR+ N +KD + FWN L+I P+
Sbjct: 79 RKSLTQKEKITVRLKNVKKDGTPFWNELNIDPL 111
>gi|357406409|ref|YP_004918333.1| PAS/PAC sensor protein [Methylomicrobium alcaliphilum 20Z]
gi|351719074|emb|CCE24748.1| putative PAS/PAC sensor protein [Methylomicrobium alcaliphilum 20Z]
Length = 148
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
LDE + T+ DP + PIV+A++ F ++G+S+ E+IGRN R QG N+ I I+
Sbjct: 20 LDECINGITLADPDLDDMPIVYANKAFEAVTGYSQEEVIGRNCRFLQGDDRNQEEIKRIK 79
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
EAI ++P+EV L NYKK+G F+ FK+ + G+ +F+ VQ I
Sbjct: 80 EAINAQKPVEVVLRNYKKNGELFYNRFKI-IPLCDRSGKLIYFLGVQYDI 128
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 65/110 (59%)
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G I L + L L DP L DMP+VYA+ AF +TGY + EV+G+NCRFL G D
Sbjct: 10 GLIPQILSLILDECINGITLADPDLDDMPIVYANKAFEAVTGYSQEEVIGRNCRFLQGDD 69
Query: 297 TDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ + +IKE+I ++ V + NY+K+ F+N I P+ + SGK++
Sbjct: 70 RNQEEIKRIKEAINAQKPVEVVLRNYKKNGELFYNRFKIIPLCDRSGKLI 119
>gi|443632380|ref|ZP_21116560.1| sensory box protein [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|443348495|gb|ELS62552.1| sensory box protein [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 261
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 74/130 (56%), Gaps = 4/130 (3%)
Query: 10 QSFNNRYTLWV-HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
QSF + L V +ALD ITDP++ +PIV+ ++GF++M+G+ EI+G+N R
Sbjct: 5 QSFGVQGQLEVIKKALDHARVGVVITDPALEDNPIVYVNQGFVQMTGYEAEEILGKNCRF 64
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QG T+ + IR A++ + P+ V + NYKKDGT FW + + E T+FV
Sbjct: 65 LQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPL---EIEGKTYFVG 121
Query: 129 VQVPIVSRKH 138
+Q I +K
Sbjct: 122 IQKDITKQKE 131
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 61/94 (64%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + V+ DP L D P+VY + F+++TGY+ E++G+NCRFL G TD + I
Sbjct: 19 ALDHARVGVVITDPALEDNPIVYVNQGFVQMTGYEAEEILGKNCRFLQGKHTDPAEVDNI 78
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIR 339
+ ++Q ++ TV+I NY+KD + FWN L+I P+
Sbjct: 79 RTALQNKEPVTVQIQNYKKDGTMFWNELNIDPLE 112
>gi|168702193|ref|ZP_02734470.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
2246]
Length = 823
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 63/94 (67%)
Query: 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQT 311
Q FV+ D PD P++Y S F ++TG+ +V G+NCRFL G DTD + +++ +
Sbjct: 333 QGFVICDFLAPDRPLIYVSPGFERITGWAAADVTGRNCRFLQGRDTDRAAVDRLRAAQAA 392
Query: 312 EQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+AC + +LNYR+D ++FWN L +SP+R+ +G+V
Sbjct: 393 GEACAIELLNYRRDGTAFWNGLSVSPVRDETGRV 426
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+ F I D P+++ S GF +++G++ A++ GRN R QG T+R + +
Sbjct: 327 AITSADQGFVICDFLAPDRPLIYVSPGFERITGWAAADVTGRNCRFLQGRDTDRAAVDRL 386
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R A + LLNY++DGT FW +S V E GR TH+V V + +R+
Sbjct: 387 RAAQAAGEACAIELLNYRRDGTAFWNGLSVSPVR-DETGRVTHYVGVLSDVTARR 440
>gi|428176404|gb|EKX45289.1| hypothetical protein GUITHDRAFT_71576 [Guillardia theta CCMP2712]
Length = 122
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 59/90 (65%)
Query: 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQT 311
Q + D LPD P+V+A+ F LT Y R E++G+NCRFL G DTD + +I+E+I+
Sbjct: 23 QVVCVADARLPDCPIVFANQRFFDLTQYTREEILGRNCRFLQGPDTDRDDVTEIREAIKA 82
Query: 312 EQACTVRILNYRKDKSSFWNLLHISPIRNA 341
+ + ILNY+KD + FWN LHI P+ +A
Sbjct: 83 GRPVSSCILNYKKDGTLFWNHLHIEPVCSA 112
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 63/102 (61%), Gaps = 10/102 (9%)
Query: 6 GLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN 65
G+IE S N R +W H+ + + D + PIVFA++ F ++ ++R EI+GRN
Sbjct: 10 GIIEMS-NAR--VWQHQVV-------CVADARLPDCPIVFANQRFFDLTQYTREEILGRN 59
Query: 66 GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFW 107
R QGP T+R + EIREAI+ RP+ +LNYKKDGT FW
Sbjct: 60 CRFLQGPDTDRDDVTEIREAIKAGRPVSSCILNYKKDGTLFW 101
>gi|388578800|gb|EIM19136.1| hypothetical protein WALSEDRAFT_10239, partial [Wallemia sebi CBS
633.66]
Length = 106
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L D+F IT+P + HPIV AS GF K++G+ + IIGRN R QGP T +++ IR+A+
Sbjct: 1 LSDAFVITNPRLRDHPIVMASDGFSKVTGYHHSTIIGRNCRFLQGPGTAPQSVQRIRDAL 60
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
I LLNY+ DGTPF+ L M + G+ +F+ QV
Sbjct: 61 NNGVSITELLLNYRADGTPFFCLLNM-IPLHDSQGKIAYFIGGQV 104
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 62/96 (64%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+ +FV+ +P L D P+V ASD F K+TGY + ++G+NCRFL G T + +I++++
Sbjct: 1 LSDAFVITNPRLRDHPIVMASDGFSKVTGYHHSTIIGRNCRFLQGPGTAPQSVQRIRDAL 60
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ T +LNYR D + F+ LL++ P+ ++ GK+
Sbjct: 61 NNGVSITELLLNYRADGTPFFCLLNMIPLHDSQGKI 96
>gi|193214461|ref|YP_001995660.1| PAS/PAC sensor protein [Chloroherpeton thalassium ATCC 35110]
gi|193087938|gb|ACF13213.1| putative PAS/PAC sensor protein [Chloroherpeton thalassium ATCC
35110]
Length = 190
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 239 ISSSLYI-SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
I SL I ++ + + + D PD P+++ ++ F ++TGY+ E++G+NCRFL G +T
Sbjct: 6 IDKSLLIKAIDKTSEGIAISDARQPDNPLIFVNNGFTEITGYNSEEILGKNCRFLQGPET 65
Query: 298 DTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ I+ES+ T + C V + N++K+ +FWN L ++PIR+ +G++
Sbjct: 66 NKEASQMIRESLGTGKHCVVELRNHKKNGEAFWNRLSLNPIRDENGEI 113
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 67/118 (56%), Gaps = 1/118 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+A+D+ + I+D +P++F + GF +++G++ EI+G+N R QGP TN+
Sbjct: 13 KAIDKTSEGIAISDARQPDNPLIFVNNGFTEITGYNSEEILGKNCRFLQGPETNKEASQM 72
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
IRE++ + V L N+KK+G FW ++ + E+G THFV +Q I K +
Sbjct: 73 IRESLGTGKHCVVELRNHKKNGEAFWNRLSLNPI-RDENGEITHFVGIQSDITESKKL 129
>gi|15790465|ref|NP_280289.1| bacterio-opsin activator [Halobacterium sp. NRC-1]
gi|169236201|ref|YP_001689401.1| bacterio-opsin activator [Halobacterium salinarum R1]
gi|47115564|sp|Q9HPU8.1|BAT_HALSA RecName: Full=Bacterioopsin transcriptional activator
gi|10580961|gb|AAG19769.1| bacterio-opsin activator [Halobacterium sp. NRC-1]
gi|167727267|emb|CAP14053.1| bacterioopsin activator Bat [Halobacterium salinarum R1]
Length = 674
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+ALDE P TI+D + PI++ + F ++G+S E++G N R QGP+TN +
Sbjct: 161 EQALDEAPIGITISDATDPEEPIIYINDSFEDITGYSPDEVVGANHRFLQGPKTNEDRVA 220
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
E AI E+ +V L NY++DG+ FW +S ++ EDG +H+V Q+ + R
Sbjct: 221 EFWTAITEDHDTQVVLRNYRRDGSLFWNQVDISPIY-DEDGTVSHYVGFQMDVSER 275
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 50/84 (59%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILN 321
P+ P++Y +D+F +TGY +EVVG N RFL G T+ + + +I + V + N
Sbjct: 179 PEEPIIYINDSFEDITGYSPDEVVGANHRFLQGPKTNEDRVAEFWTAITEDHDTQVVLRN 238
Query: 322 YRKDKSSFWNLLHISPIRNASGKV 345
YR+D S FWN + ISPI + G V
Sbjct: 239 YRRDGSLFWNQVDISPIYDEDGTV 262
>gi|402772327|ref|YP_006591864.1| AraC family transcriptional regulator [Methylocystis sp. SC2]
gi|401774347|emb|CCJ07213.1| Transcriptional regulator with PAS/PAC sensors, AraC family
[Methylocystis sp. SC2]
Length = 150
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 65/110 (59%)
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G I L L L DP PD P+VYA+ AF +TGY + E++G+NCRFL G D
Sbjct: 9 GIIPKILTQILDSCVNGVTLADPDQPDAPIVYANKAFESMTGYGQEEIIGRNCRFLQGDD 68
Query: 297 TDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
D L ++E+++T Q V + NYRK+ F+N L+I+P+ ++ G V+
Sbjct: 69 RDQEGLAPLREAMRTHQHIEVTLRNYRKNGELFFNKLNITPLLDSRGAVI 118
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+ LD + T+ DP PIV+A++ F M+G+ + EIIGRN R QG ++ +
Sbjct: 17 QILDSCVNGVTLADPDQPDAPIVYANKAFESMTGYGQEEIIGRNCRFLQGDDRDQEGLAP 76
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
+REA+R + IEV L NY+K+G F+ ++ + G +++ VQ +
Sbjct: 77 LREAMRTHQHIEVTLRNYRKNGELFFNKLNITPLLDSR-GAVIYYLGVQYDVTE 129
>gi|448640838|ref|ZP_21677625.1| HTR-like protein [Haloarcula sinaiiensis ATCC 33800]
gi|445761363|gb|EMA12611.1| HTR-like protein [Haloarcula sinaiiensis ATCC 33800]
Length = 726
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 61/92 (66%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
+ DP+ PD P++YA+D + +LTGY E++G+NCR L G +TD + ++++I +
Sbjct: 285 TITDPNQPDNPLIYANDHYRELTGYSLPELLGKNCRILQGENTDPEPVDALRDAIDAGEQ 344
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+V + NYRKD + FWN + I+P+R+ G V+
Sbjct: 345 VSVELRNYRKDGTEFWNRVRIAPVRDDDGTVV 376
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 73/131 (55%), Gaps = 1/131 (0%)
Query: 7 LIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNG 66
+ EQ R L A+DE P TITDP+ +P+++A+ + +++G+S E++G+N
Sbjct: 260 VTEQKERERELLRNKRAIDEAPVGVTITDPNQPDNPLIYANDHYRELTGYSLPELLGKNC 319
Query: 67 RMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHF 126
R+ QG T+ + +R+AI + V L NY+KDGT FW +++ V +DG ++
Sbjct: 320 RILQGENTDPEPVDALRDAIDAGEQVSVELRNYRKDGTEFWNRVRIAPVR-DDDGTVVNY 378
Query: 127 VAVQVPIVSRK 137
V Q RK
Sbjct: 379 VGFQQDTTERK 389
>gi|358059757|dbj|GAA94526.1| hypothetical protein E5Q_01178 [Mixia osmundae IAM 14324]
Length = 1552
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 60/92 (65%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
FV+ +P D P++ ASDAF++LTGY R + +NCRFL G T + +I+ ++ T Q
Sbjct: 1206 FVITNPRQRDHPIIGASDAFVELTGYSRQAICSRNCRFLQGPSTSREAVARIRVALNTGQ 1265
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
ACT +LNYR++ F+NLL I P+R+ G V
Sbjct: 1266 ACTELLLNYRQNGQPFFNLLCIFPLRDTDGSV 1297
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 5/129 (3%)
Query: 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTN 75
+TL E L D F IT+P HPI+ AS F++++G+SR I RN R QGP T+
Sbjct: 1191 FTLRDKEKGQGLGDCFVITNPRQRDHPIIGASDAFVELTGYSRQAICSRNCRFLQGPSTS 1250
Query: 76 RRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV---- 131
R + IR A+ + LLNY+++G PF+ L + DG +++ Q+
Sbjct: 1251 REAVARIRVALNTGQACTELLLNYRQNGQPFFNLLCI-FPLRDTDGSVSYYCGGQINVSG 1309
Query: 132 PIVSRKHMR 140
P+ S K +R
Sbjct: 1310 PLKSSKSLR 1318
>gi|55377011|ref|YP_134861.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
gi|55229736|gb|AAV45155.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
Length = 726
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 61/92 (66%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
+ DP+ PD P++YA+D + +LTGY E++G+NCR L G +TD + ++++I +
Sbjct: 285 TITDPNQPDNPLIYANDHYRELTGYSLPELLGKNCRILQGENTDPEPVDALRDAIDAGEQ 344
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+V + NYRKD + FWN + I+P+R+ G V+
Sbjct: 345 VSVELRNYRKDGTEFWNRVRIAPVRDDDGTVV 376
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 73/131 (55%), Gaps = 1/131 (0%)
Query: 7 LIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNG 66
+ EQ R L A+DE P TITDP+ +P+++A+ + +++G+S E++G+N
Sbjct: 260 VTEQKERERELLRNKRAIDEAPVGVTITDPNQPDNPLIYANDHYRELTGYSLPELLGKNC 319
Query: 67 RMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHF 126
R+ QG T+ + +R+AI + V L NY+KDGT FW +++ V +DG ++
Sbjct: 320 RILQGENTDPEPVDALRDAIDAGEQVSVELRNYRKDGTEFWNRVRIAPVR-DDDGTVVNY 378
Query: 127 VAVQVPIVSRK 137
V Q RK
Sbjct: 379 VGFQQDTTERK 389
>gi|299008150|gb|ADJ00073.1| Evoglow [Mariner mini-transposon delivery vector pMaEvo]
Length = 165
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD + ITDP++ +PIV+ ++GF++M+G+ EI+G+N R QG T+ +
Sbjct: 16 IKKALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNARFLQGKHTDPAEV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR A++ + P+ V + NYKKDGT FW + + E T+FV +Q I +K
Sbjct: 76 DNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPM---EIEDKTYFVGIQNDITKQKE 131
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 61/94 (64%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L ++ V+ DP L D P+VY + F+++TGY+ E++G+N RFL G TD + I
Sbjct: 19 ALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNARFLQGKHTDPAEVDNI 78
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIR 339
+ ++Q ++ TV+I NY+KD + FWN L+I P+
Sbjct: 79 RTALQNKEPVTVQIQNYKKDGTMFWNELNIDPME 112
>gi|292654498|ref|YP_003534395.1| putative bacterio-opsin activator [Haloferax volcanii DS2]
gi|448293499|ref|ZP_21483605.1| bacterio-opsin activator [Haloferax volcanii DS2]
gi|291372918|gb|ADE05145.1| Putative bacterio-opsin activator [Haloferax volcanii DS2]
gi|445570553|gb|ELY25113.1| bacterio-opsin activator [Haloferax volcanii DS2]
Length = 658
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+DE P T+ D S+ P+V+ + F M+G+S +GRN R QGP T+ +
Sbjct: 136 EQAIDEAPVGITVADCSLPDRPLVYVNEAFETMTGYSADAALGRNCRYLQGPNTDPERVA 195
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
E+R AI E V LLNY+ +G FW ++ + G DG TH+V Q I R
Sbjct: 196 ELRRAIEAEESASVELLNYRANGETFWNRVDVAPLSGS-DGEVTHYVGFQTDITER 250
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 61/92 (66%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ D LPD P+VY ++AF +TGY + +G+NCR+L G +TD + +++ +I+ E+
Sbjct: 146 ITVADCSLPDRPLVYVNEAFETMTGYSADAALGRNCRYLQGPNTDPERVAELRRAIEAEE 205
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +V +LNYR + +FWN + ++P+ + G+V
Sbjct: 206 SASVELLNYRANGETFWNRVDVAPLSGSDGEV 237
>gi|448651252|ref|ZP_21680321.1| HTR-like protein [Haloarcula californiae ATCC 33799]
gi|445770779|gb|EMA21837.1| HTR-like protein [Haloarcula californiae ATCC 33799]
Length = 726
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 61/92 (66%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
+ DP+ PD P++YA+D + +LTGY E++G+NCR L G +TD + ++++I +
Sbjct: 285 TITDPNQPDNPLIYANDHYRELTGYSLPELLGKNCRILQGENTDPEPVDALRDAIDAGEQ 344
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+V + NYRKD + FWN + I+P+R+ G V+
Sbjct: 345 VSVELRNYRKDGTEFWNRVRIAPVRDDDGTVV 376
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 73/131 (55%), Gaps = 1/131 (0%)
Query: 7 LIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNG 66
+ EQ R L A+DE P TITDP+ +P+++A+ + +++G+S E++G+N
Sbjct: 260 VTEQKERERELLRNKRAIDEAPVGVTITDPNQPDNPLIYANDHYRELTGYSLPELLGKNC 319
Query: 67 RMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHF 126
R+ QG T+ + +R+AI + V L NY+KDGT FW +++ V +DG ++
Sbjct: 320 RILQGENTDPEPVDALRDAIDAGEQVSVELRNYRKDGTEFWNRVRIAPVR-DDDGTVVNY 378
Query: 127 VAVQVPIVSRK 137
V Q RK
Sbjct: 379 VGFQQDTTERK 389
>gi|383620603|ref|ZP_09947009.1| bacterio-opsin activator [Halobiforma lacisalsi AJ5]
gi|448697960|ref|ZP_21698838.1| bacterio-opsin activator [Halobiforma lacisalsi AJ5]
gi|445781326|gb|EMA32187.1| bacterio-opsin activator [Halobiforma lacisalsi AJ5]
Length = 628
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 58/88 (65%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTV 317
DP D P+VY +DA+ ++TGY ++VVG+NCR L G D+ + ++ +++ + TV
Sbjct: 143 DPDREDNPLVYINDAYQEITGYSYDDVVGRNCRLLQGEDSSEEAIARMAKAVDEDYPVTV 202
Query: 318 RILNYRKDKSSFWNLLHISPIRNASGKV 345
I NYRKD + FWN + I+P+RN G+V
Sbjct: 203 EIKNYRKDGTEFWNEVTIAPVRNDDGEV 230
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P +I+DP +P+V+ + + +++G+S +++GRN R+ QG ++ I +
Sbjct: 131 AIDEAPVGISISDPDREDNPLVYINDAYQEITGYSYDDVVGRNCRLLQGEDSSEEAIARM 190
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+A+ E+ P+ V + NY+KDGT FW ++ V +DG T++V Q I +RK
Sbjct: 191 AKAVDEDYPVTVEIKNYRKDGTEFWNEVTIAPVR-NDDGEVTNYVGFQNDITARKEA 246
>gi|46121225|ref|XP_385167.1| hypothetical protein FG04991.1 [Gibberella zeae PH-1]
Length = 656
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 58/96 (60%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+K SF L DP P++ ASD F +LTGY R EV+ NCRFL G TD + ++ +I
Sbjct: 285 LKGSFCLSDPSRSGNPIMLASDEFEELTGYSRTEVLAHNCRFLQGPQTDRDRIANMRSAI 344
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
CT +LN+RKD + FWNLL + P+ + +GK
Sbjct: 345 WRNDECTELLLNFRKDGTPFWNLLFLCPLLDKTGKT 380
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L SF ++DPS SG+PI+ AS F +++G+SR E++ N R QGP+T+R I +R AI
Sbjct: 285 LKGSFCLSDPSRSGNPIMLASDEFEELTGYSRTEVLAHNCRFLQGPQTDRDRIANMRSAI 344
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
LLN++KDGTPFW L + + K G+ F+ Q+ + S H
Sbjct: 345 WRNDECTELLLNFRKDGTPFWNLLFLCPLLDKT-GKTKFFMGAQIDVSSSIH 395
>gi|375363433|ref|YP_005131472.1| Blue-light photoreceptor Phototropin-like protein [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|421730573|ref|ZP_16169699.1| Blue-light photoreceptor Phototropin-like protein [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|451345830|ref|YP_007444461.1| Blue-light photoreceptor Phototropin-like protein [Bacillus
amyloliquefaciens IT-45]
gi|371569427|emb|CCF06277.1| Blue-light photoreceptor Phototropin-like protein [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|407074727|gb|EKE47714.1| Blue-light photoreceptor Phototropin-like protein [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|449849588|gb|AGF26580.1| Blue-light photoreceptor Phototropin-like protein [Bacillus
amyloliquefaciens IT-45]
Length = 261
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD ITDPS+ +PI++ ++GF+ M+G++ EI+G+N R Q T+R+ +
Sbjct: 16 IKKALDHARIGVVITDPSLEDNPIIYTNQGFMDMTGYASEEILGKNCRFLQSKETDRQQV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+IR+++ ++ I V L N KKDGTPFW + ++ ++ +FV Q I +K
Sbjct: 76 AKIRKSLNQKEKITVRLKNVKKDGTPFWNELNIDPLYVED---KLYFVGFQKDITEQKE 131
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 59/93 (63%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + V+ DP L D P++Y + F+ +TGY E++G+NCRFL +TD + +I
Sbjct: 19 ALDHARIGVVITDPSLEDNPIIYTNQGFMDMTGYASEEILGKNCRFLQSKETDRQQVAKI 78
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
++S+ ++ TVR+ N +KD + FWN L+I P+
Sbjct: 79 RKSLNQKEKITVRLKNVKKDGTPFWNELNIDPL 111
>gi|386759609|ref|YP_006232825.1| blue light GTP-binding receptor [Bacillus sp. JS]
gi|384932891|gb|AFI29569.1| blue light GTP-binding receptor [Bacillus sp. JS]
Length = 261
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD ITDP++ +PIV+ ++GF++++G+ EI+G+N R QG TN +
Sbjct: 16 IKKALDHARVGVVITDPALEDNPIVYVNQGFVQITGYEAEEILGKNCRFLQGKHTNPAEV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR A++ + P+ V + NYKKDGT FW + + E T+FV +Q I +K
Sbjct: 76 DNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPM---EIEDKTYFVGIQKDITEQKE 131
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 61/94 (64%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + V+ DP L D P+VY + F+++TGY+ E++G+NCRFL G T+ + I
Sbjct: 19 ALDHARVGVVITDPALEDNPIVYVNQGFVQITGYEAEEILGKNCRFLQGKHTNPAEVDNI 78
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIR 339
+ ++Q ++ TV+I NY+KD + FWN L+I P+
Sbjct: 79 RTALQNKEPVTVQIQNYKKDGTMFWNELNIDPME 112
>gi|159043684|ref|YP_001532478.1| putative signal transduction histidine kinase [Dinoroseobacter
shibae DFL 12]
gi|157911444|gb|ABV92877.1| putative signal transduction histidine kinase [Dinoroseobacter
shibae DFL 12]
Length = 338
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 62/96 (64%)
Query: 249 RIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKES 308
R + + VL +P++ D P+VY +DAF ++TGY R +G+NCRFL G TD + +++ +
Sbjct: 21 RARVAMVLTNPNIHDNPIVYVNDAFERVTGYSRTAAIGRNCRFLQGSMTDDADVAKLRRA 80
Query: 309 IQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGK 344
I+ E+ TV ILNYR F N L I+P+++ GK
Sbjct: 81 IEREEDVTVDILNYRASGEPFLNRLIIAPVKSDDGK 116
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ +T+P+I +PIV+ + F +++G+SR IGRN R QG T+ + ++R AI E
Sbjct: 25 AMVLTNPNIHDNPIVYVNDAFERVTGYSRTAAIGRNCRFLQGSMTDDADVAKLRRAIERE 84
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+ V++LNY+ G PF ++ V +DG+ +F+ +Q + R
Sbjct: 85 EDVTVDILNYRASGEPFLNRLIIAPV-KSDDGKCHYFIGIQKAMSDR 130
>gi|257095066|ref|YP_003168707.1| putative PAS/PAC sensor protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047590|gb|ACV36778.1| putative PAS/PAC sensor protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 143
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 63/110 (57%)
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G I L L L DP LPD P+VYA+ F L+GY + EVVG+NCRFL G D
Sbjct: 9 GLIPYVLTQILDACVNGITLSDPDLPDNPIVYANKVFEDLSGYSQEEVVGRNCRFLQGDD 68
Query: 297 TDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ L I+ ++ +++C V + NYRK+ F+N L I P+ + GKV+
Sbjct: 69 REQEALTTIRTALAKQESCVVTLRNYRKNGELFFNRLSIRPLVDREGKVI 118
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 71/126 (56%), Gaps = 3/126 (2%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+ LD + T++DP + +PIV+A++ F +SG+S+ E++GRN R QG + +
Sbjct: 17 QILDACVNGITLSDPDLPDNPIVYANKVFEDLSGYSQEEVVGRNCRFLQGDDREQEALTT 76
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
IR A+ ++ V L NY+K+G F+ + + +E G+ +++ VQ I + +R
Sbjct: 77 IRTALAKQESCVVTLRNYRKNGELFFNRLSIRPLVDRE-GKVIYYLGVQYDIT--EQLRA 133
Query: 142 SGMSYS 147
SG ++
Sbjct: 134 SGEDHA 139
>gi|242345219|dbj|BAH80323.1| aureochrome2-like protein [Ochromonas danica]
Length = 360
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 63/94 (67%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
SF + + PDMP+VYAS FLKLTGY+ +E++G+NCRFL G TD T + ++ ++
Sbjct: 154 SFCISNAISPDMPLVYASPGFLKLTGYEMHEILGRNCRFLQGPRTDPTEVAKVSRALAEG 213
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ + +LNYRKD +FWN + +S +++ +G+
Sbjct: 214 RDYSTVLLNYRKDGRTFWNQILLSHVKDRAGRTF 247
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SF I++ P+V+AS GFLK++G+ EI+GRN R QGPRT+ + ++ A+ E
Sbjct: 154 SFCISNAISPDMPLVYASPGFLKLTGYEMHEILGRNCRFLQGPRTDPTEVAKVSRALAEG 213
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R LLNY+KDG FW +S V + GR V +Q +
Sbjct: 214 RDYSTVLLNYRKDGRTFWNQILLSHVKDRA-GRTFFVVGIQTQV 256
>gi|154304988|ref|XP_001552897.1| hypothetical protein BC1G_08584 [Botryotinia fuckeliana B05.10]
Length = 593
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 60/92 (65%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
F L DP D P+V+ASD F+ +TGY R++++ +NCRFL G TD +++ SI+ +
Sbjct: 257 FCLTDPRRADNPIVFASDGFVSVTGYSRSDIIPRNCRFLQGSFTDRQATKRLRTSIENCE 316
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+LNYRK+ FWNLL++SP+ + +G V
Sbjct: 317 ETVELLLNYRKNGDPFWNLLYVSPLLDGNGDV 348
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 93/183 (50%), Gaps = 37/183 (20%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L D F +TDP + +PIVFAS GF+ ++G+SR++II RN R QG T+R+ +R +I
Sbjct: 253 LGDCFCLTDPRRADNPIVFASDGFVSVTGYSRSDIIPRNCRFLQGSFTDRQATKRLRTSI 312
Query: 87 RE-ERPIEVNLLNYKKDGTPFWMLFKMS-LVFGKEDGRATHFVAVQVPIVSRKHMRNSGM 144
E +E+ LLNY+K+G PFW L +S L+ G D R F+ Q+ + H R
Sbjct: 313 ENCEETVEL-LLNYRKNGDPFWNLLYVSPLLDGNGDVR--FFLGGQINCSTTIHSRT--- 366
Query: 145 SYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDLEKRKA 204
D+ R+L+L+ +DTG IE S + + +++
Sbjct: 367 -----------------------------DVLRILSLNDEDTGSFIEGSNKTPSVRSKES 397
Query: 205 ATA 207
TA
Sbjct: 398 NTA 400
>gi|114705618|ref|ZP_01438521.1| sensory box histidine kinase [Fulvimarina pelagi HTCC2506]
gi|114538464|gb|EAU41585.1| sensory box histidine kinase [Fulvimarina pelagi HTCC2506]
Length = 420
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 63/104 (60%)
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G S +L ++ + VL +PHL D P++YA+ AF +TGY ++G+NCRFL G
Sbjct: 11 GFSMPSGMSTAALSKLPLALVLTNPHLDDNPIIYANRAFETITGYSAGAIIGRNCRFLQG 70
Query: 295 VDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
+TD + +I E+++ E+ TV I NYR D + F N L I+P+
Sbjct: 71 ENTDPEHVRRISEALRNEEDVTVEIENYRADGTKFLNKLMITPL 114
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 57/98 (58%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL +LP + +T+P + +PI++A+R F ++G+S IIGRN R QG T+ + I
Sbjct: 22 ALSKLPLALVLTNPHLDDNPIIYANRAFETITGYSAGAIIGRNCRFLQGENTDPEHVRRI 81
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED 120
EA+R E + V + NY+ DGT F ++ ++ D
Sbjct: 82 SEALRNEEDVTVEIENYRADGTKFLNKLMITPLYDDHD 119
>gi|350267212|ref|YP_004878519.1| sensory box protein [Bacillus subtilis subsp. spizizenii TU-B-10]
gi|349600099|gb|AEP87887.1| sensory box protein [Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 261
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 74/130 (56%), Gaps = 4/130 (3%)
Query: 10 QSFNNRYTLWV-HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
QSF + L V +ALD ITDP++ +PIV+ ++GF++M+G+ EI+G+N R
Sbjct: 5 QSFGVQGQLEVIKKALDHARVGVVITDPALEDNPIVYVNQGFVQMTGYEAGEILGKNCRF 64
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QG T+ + IR A++ + P+ V + NYKKDGT FW + + E T+FV
Sbjct: 65 LQGKHTDPAEVDNIRIALQNKEPVTVQIQNYKKDGTMFWNELSIDPL---EIEDKTYFVG 121
Query: 129 VQVPIVSRKH 138
+Q I +K
Sbjct: 122 IQKDITQQKE 131
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 60/94 (63%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + V+ DP L D P+VY + F+++TGY+ E++G+NCRFL G TD + I
Sbjct: 19 ALDHARVGVVITDPALEDNPIVYVNQGFVQMTGYEAGEILGKNCRFLQGKHTDPAEVDNI 78
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIR 339
+ ++Q ++ TV+I NY+KD + FWN L I P+
Sbjct: 79 RIALQNKEPVTVQIQNYKKDGTMFWNELSIDPLE 112
>gi|389691690|ref|ZP_10180484.1| PAS domain S-box [Microvirga sp. WSM3557]
gi|388588673|gb|EIM28963.1| PAS domain S-box [Microvirga sp. WSM3557]
Length = 896
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 54/88 (61%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ DP PD P+VY +DAF K+TGY E +G+NCRFL D + +I+E+I +
Sbjct: 16 MIATDPRAPDNPIVYVNDAFCKVTGYSPEEAIGRNCRFLQAPRVDDNTVTRIREAISAGR 75
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNA 341
A + +LN RKD + FWN L I+PI +
Sbjct: 76 AISAELLNRRKDGTEFWNHLFITPISDG 103
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 58/109 (53%), Gaps = 3/109 (2%)
Query: 34 TDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIE 93
TDP +PIV+ + F K++G+S E IGRN R Q PR + T+ IREAI R I
Sbjct: 19 TDPRAPDNPIVYVNDAFCKVTGYSPEEAIGRNCRFLQAPRVDDNTVTRIREAISAGRAIS 78
Query: 94 VNLLNYKKDGTPFW-MLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
LLN +KDGT FW LF + G D R F+A QV + R
Sbjct: 79 AELLNRRKDGTEFWNHLFITPISDGGSDPR--FFLATQVDVTQAYESRT 125
>gi|359461408|ref|ZP_09249971.1| PAS sensor diguanylate cyclase/phophodiesterase [Acaryochloris sp.
CCMEE 5410]
Length = 912
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
D I+D ++ G PI+FAS F + +G++ E+IG N R QGP+T+ T+ EIR A++
Sbjct: 128 DGIIISDATVPGFPIIFASSNFYEFTGYTPDEVIGHNCRFLQGPKTDANTVDEIRLALKN 187
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+P E +LNY K G PFW L ++ + + G V +Q I +K
Sbjct: 188 YQPFEGEILNYCKTGQPFWNLLRIKPLRNAQ-GEVHFLVGIQTDITQQK 235
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 56/91 (61%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
++ D +P P+++AS F + TGY +EV+G NCRFL G TD + +I+ +++ Q
Sbjct: 131 IISDATVPGFPIIFASSNFYEFTGYTPDEVIGHNCRFLQGPKTDANTVDEIRLALKNYQP 190
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
ILNY K FWNLL I P+RNA G+V
Sbjct: 191 FEGEILNYCKTGQPFWNLLRIKPLRNAQGEV 221
>gi|296331991|ref|ZP_06874455.1| blue light GTP-binding receptor [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305675615|ref|YP_003867287.1| blue light GTP-binding receptor [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296150762|gb|EFG91647.1| blue light GTP-binding receptor [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305413859|gb|ADM38978.1| blue light GTP-binding receptor [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 261
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 73/130 (56%), Gaps = 4/130 (3%)
Query: 10 QSFNNRYTLWV-HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
QSF + L V +ALD ITDP++ +PIV+ ++GF++M+G+ EI+G+N R
Sbjct: 5 QSFGIQGQLEVIKKALDHARVGVVITDPALEDNPIVYVNQGFVQMTGYKAGEILGKNCRF 64
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QG T + IR A++ + P+ V + NYKKDGT FW + + E T+FV
Sbjct: 65 LQGKHTESAEVDNIRIALQNKEPVTVQIQNYKKDGTMFWNELSIDPL---EIEDKTYFVG 121
Query: 129 VQVPIVSRKH 138
+Q I +K
Sbjct: 122 IQKDITQQKE 131
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 60/94 (63%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + V+ DP L D P+VY + F+++TGY E++G+NCRFL G T++ + I
Sbjct: 19 ALDHARVGVVITDPALEDNPIVYVNQGFVQMTGYKAGEILGKNCRFLQGKHTESAEVDNI 78
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIR 339
+ ++Q ++ TV+I NY+KD + FWN L I P+
Sbjct: 79 RIALQNKEPVTVQIQNYKKDGTMFWNELSIDPLE 112
>gi|448678692|ref|ZP_21689699.1| HTR-like protein [Haloarcula argentinensis DSM 12282]
gi|445772679|gb|EMA23724.1| HTR-like protein [Haloarcula argentinensis DSM 12282]
Length = 726
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 61/92 (66%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
+ DP+ PD P++YA+D + +LTGY E++G+NCR L G +TD + ++++I +
Sbjct: 285 TITDPNRPDNPLIYANDHYRELTGYSLPELLGKNCRILQGENTDPEPVDALRDAIDAGEQ 344
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+V + NYRKD + FWN + I+P+R+ G V+
Sbjct: 345 VSVELRNYRKDGTEFWNRVRIAPVRDDDGTVV 376
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 74/131 (56%), Gaps = 1/131 (0%)
Query: 7 LIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNG 66
+ EQ R L A+DE P TITDP+ +P+++A+ + +++G+S E++G+N
Sbjct: 260 VTEQKERERELLRNKRAIDEAPVGVTITDPNRPDNPLIYANDHYRELTGYSLPELLGKNC 319
Query: 67 RMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHF 126
R+ QG T+ + +R+AI + V L NY+KDGT FW +++ V +DG ++
Sbjct: 320 RILQGENTDPEPVDALRDAIDAGEQVSVELRNYRKDGTEFWNRVRIAPVR-DDDGTVVNY 378
Query: 127 VAVQVPIVSRK 137
V Q I RK
Sbjct: 379 VGFQQDITERK 389
>gi|331228939|ref|XP_003327136.1| hypothetical protein PGTG_08913 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309306126|gb|EFP82717.1| hypothetical protein PGTG_08913 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 856
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 60/93 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
F L +P L D P+V SD F K+TGY+R +VG+NCRFL G T + +I++ + + +
Sbjct: 442 FCLTNPRLRDHPIVLVSDGFTKVTGYERQAIVGKNCRFLQGPGTSPESVQRIRDGLNSGE 501
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
CT +LNYRKD + F+ LL I P R+ +G ++
Sbjct: 502 GCTELLLNYRKDGTPFYCLLCIIPFRDVTGALI 534
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 25 DELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84
D L D F +T+P + HPIV S GF K++G+ R I+G+N R QGP T+ ++ IR+
Sbjct: 436 DGLGDCFCLTNPRLRDHPIVLVSDGFTKVTGYERQAIVGKNCRFLQGPGTSPESVQRIRD 495
Query: 85 AIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
+ LLNY+KDGTPF+ L + + F G +F+ Q+ +
Sbjct: 496 GLNSGEGCTELLLNYRKDGTPFYCLLCI-IPFRDVTGALIYFIGGQINVT 544
>gi|367021966|ref|XP_003660268.1| hypothetical protein MYCTH_2298367 [Myceliophthora thermophila ATCC
42464]
gi|347007535|gb|AEO55023.1| hypothetical protein MYCTH_2298367 [Myceliophthora thermophila ATCC
42464]
Length = 663
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
+LY LG +F L DP P+ P+++ASD L + GY R ++VG+NCR G+ TD
Sbjct: 134 TLYPGLG---DAFCLTDPLRPNNPVIFASDGLLNMAGYHRRQLVGENCRLFQGIATDPEA 190
Query: 302 LYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPI-RNAS 342
++ E++++ + T +LNYR D + +WNLL+I P+ RN S
Sbjct: 191 AGRLGEAVESGRETTELVLNYRLDGTPYWNLLYICPLMRNGS 232
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
D+F +TDP +P++FAS G L M+G+ R +++G N R+FQG T+ + EA+
Sbjct: 141 DAFCLTDPLRPNNPVIFASDGLLNMAGYHRRQLVGENCRLFQGIATDPEAAGRLGEAVES 200
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R +LNY+ DGTP+W L + + +G +F QV
Sbjct: 201 GRETTELVLNYRLDGTPYWNLLYICPLM--RNGSVRYFFGAQV 241
>gi|338998134|ref|ZP_08636813.1| PAS/PAC and GAF sensor-containing diguanylate
cyclase/phosphodiesterase [Halomonas sp. TD01]
gi|338765029|gb|EGP19982.1| PAS/PAC and GAF sensor-containing diguanylate
cyclase/phosphodiesterase [Halomonas sp. TD01]
Length = 863
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Query: 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR 87
P + D +G PIVFA+ F +++G+ EIIG N R GP T I IR +
Sbjct: 309 PSGIIMVDAQQAGMPIVFANPAFSRITGYEHGEIIGNNSRFLHGPETAPEAIDAIRAGMC 368
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
E+R + + LLNY+KDG PFW +S VF + G +HF+ + I K
Sbjct: 369 EQRDVSITLLNYRKDGEPFWNHLVVSPVF-DQSGTCSHFIGIHQDITHEK 417
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 57/90 (63%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+++D MP+V+A+ AF ++TGY+ E++G N RFL+G +T + I+ + ++
Sbjct: 312 IIMVDAQQAGMPIVFANPAFSRITGYEHGEIIGNNSRFLHGPETAPEAIDAIRAGMCEQR 371
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASG 343
++ +LNYRKD FWN L +SP+ + SG
Sbjct: 372 DVSITLLNYRKDGEPFWNHLVVSPVFDQSG 401
>gi|389816243|ref|ZP_10207406.1| blue-light photoreceptor [Planococcus antarcticus DSM 14505]
gi|388465236|gb|EIM07555.1| blue-light photoreceptor [Planococcus antarcticus DSM 14505]
Length = 280
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 55/85 (64%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
++ DP PD P++Y + F+++TGY R EVVG+NCRFL G T + ++K++I E+
Sbjct: 39 IVTDPAQPDNPIIYTNKTFIEMTGYTRGEVVGRNCRFLQGPGTAKEDIEKMKKAIANEEK 98
Query: 315 CTVRILNYRKDKSSFWNLLHISPIR 339
V + NYRKD S FWN L I P+
Sbjct: 99 VIVTVQNYRKDDSPFWNRLVIEPVH 123
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 53/75 (70%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ +PI++ ++ F++M+G++R E++GRN R QGP T + I ++++AI E +
Sbjct: 40 VTDPAQPDNPIIYTNKTFIEMTGYTRGEVVGRNCRFLQGPGTAKEDIEKMKKAIANEEKV 99
Query: 93 EVNLLNYKKDGTPFW 107
V + NY+KD +PFW
Sbjct: 100 IVTVQNYRKDDSPFW 114
>gi|433422511|ref|ZP_20406014.1| PAS-PAC-PAC sensing histidine kinase [Haloferax sp. BAB2207]
gi|432198601|gb|ELK54866.1| PAS-PAC-PAC sensing histidine kinase [Haloferax sp. BAB2207]
Length = 709
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 52/76 (68%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322
D P+ Y +DAF ++TGYD +EV+G+NCRFL G DTD + + E++ ++ V + NY
Sbjct: 16 DQPLTYVNDAFEEMTGYDSSEVIGRNCRFLQGDDTDPEAVETLHEAVDAGESAAVGLTNY 75
Query: 323 RKDKSSFWNLLHISPI 338
RKD + FWN L ISP+
Sbjct: 76 RKDGTPFWNDLKISPV 91
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
+D TIT+ P+ + + F +M+G+ +E+IGRN R QG T+ + +
Sbjct: 1 MDSATVGITITEAD-DDQPLTYVNDAFEEMTGYDSSEVIGRNCRFLQGDDTDPEAVETLH 59
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
EA+ V L NY+KDGTPFW K+S V+ +DG THFV Q R +RN
Sbjct: 60 EAVDAGESAAVGLTNYRKDGTPFWNDLKISPVY--DDGELTHFVGFQTDATVRHALRN 115
>gi|428304763|ref|YP_007141588.1| multi-sensor signal transduction histidine kinase [Crinalium
epipsammum PCC 9333]
gi|428246298|gb|AFZ12078.1| multi-sensor signal transduction histidine kinase [Crinalium
epipsammum PCC 9333]
Length = 811
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 61/90 (67%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315
+ D P P++Y + AF +TG+ EV+G+NC+FL G DTD V+ QI+++++T+Q C
Sbjct: 40 ITDATQPHNPIIYCNPAFESITGFPPEEVLGRNCKFLQGKDTDLAVVEQIRQALRTKQEC 99
Query: 316 TVRILNYRKDKSSFWNLLHISPIRNASGKV 345
V + NYRK+ + FWN L ISP+ + +G +
Sbjct: 100 QVVLKNYRKNGTPFWNELKISPVCDRNGNL 129
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 72/120 (60%), Gaps = 2/120 (1%)
Query: 18 LWVHE-ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNR 76
LW++E + TITD + +PI++ + F ++GF E++GRN + QG T+
Sbjct: 24 LWLYERGIAATSCGVTITDATQPHNPIIYCNPAFESITGFPPEEVLGRNCKFLQGKDTDL 83
Query: 77 RTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+ +IR+A+R ++ +V L NY+K+GTPFW K+S V + +G T+F+ VQ I SR
Sbjct: 84 AVVEQIRQALRTKQECQVVLKNYRKNGTPFWNELKISPVCDR-NGNLTNFIGVQTDITSR 142
>gi|56751332|ref|YP_172033.1| hypothetical protein syc1323_c [Synechococcus elongatus PCC 6301]
gi|81298999|ref|YP_399207.1| diguanylate cyclase/phosphodiesterase [Synechococcus elongatus PCC
7942]
gi|56686291|dbj|BAD79513.1| hypothetical protein [Synechococcus elongatus PCC 6301]
gi|81167880|gb|ABB56220.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
PAS/PAC sensor(s) [Synechococcus elongatus PCC 7942]
Length = 578
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 58/94 (61%)
Query: 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQT 311
Q + D PD+ + Y + AF KLTGY+ E +G++CRFL G D + ++++I+
Sbjct: 36 QGVAIADATHPDLILTYVNSAFKKLTGYNAAEALGKSCRFLQGSDRAQPGITTLRQAIRN 95
Query: 312 EQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
QAC V + NYRKD S FWN L I+PI + GKV
Sbjct: 96 GQACEVVLRNYRKDGSLFWNQLTIAPITDGQGKV 129
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 8/142 (5%)
Query: 4 QLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHP---IVFASRGFLKMSGFSRAE 60
QL + S ++R W+ AL+ I D + HP + + + F K++G++ AE
Sbjct: 12 QLATDDLSLSDRSRFWL-AALEASGQGVAIADAT---HPDLILTYVNSAFKKLTGYNAAE 67
Query: 61 IIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED 120
+G++ R QG + I +R+AIR + EV L NY+KDG+ FW ++ + +
Sbjct: 68 ALGKSCRFLQGSDRAQPGITTLRQAIRNGQACEVVLRNYRKDGSLFWNQLTIAPITDGQ- 126
Query: 121 GRATHFVAVQVPIVSRKHMRNS 142
G+ +H+VA+Q I + K +
Sbjct: 127 GKVSHYVALQRDITAFKEQEQA 148
>gi|258654481|ref|YP_003203637.1| PAS/PAC sensor protein [Nakamurella multipartita DSM 44233]
gi|258557706|gb|ACV80648.1| putative PAS/PAC sensor protein [Nakamurella multipartita DSM
44233]
Length = 365
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 56/93 (60%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
+ + D PD P+VYA+ AF +LTGY EV+G+NCRFL D I+ +I
Sbjct: 248 AITVADVTAPDQPLVYANPAFERLTGYAAAEVLGRNCRFLQAESGDPHERSAIRSAIANG 307
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
A T I N+R+D +FWN H+SP+RN +G+V
Sbjct: 308 DAVTTLIRNFRQDGHAFWNEFHLSPVRNGAGRV 340
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ T+ D + P+V+A+ F +++G++ AE++GRN R Q + IR AI
Sbjct: 248 AITVADVTAPDQPLVYANPAFERLTGYAAAEVLGRNCRFLQAESGDPHERSAIRSAIANG 307
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+ + N+++DG FW F +S V GR TH++ Q+ + R
Sbjct: 308 DAVTTLIRNFRQDGHAFWNEFHLSPVRNGA-GRVTHYIGYQLDVTER 353
>gi|119493194|ref|ZP_01624069.1| hypothetical protein L8106_15744 [Lyngbya sp. PCC 8106]
gi|119452759|gb|EAW33936.1| hypothetical protein L8106_15744 [Lyngbya sp. PCC 8106]
Length = 990
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 58/91 (63%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
++ DPH PD P++Y + A TGY +E++G+NCRFL G D + + I+ +I ++
Sbjct: 337 IITDPHQPDNPIIYFNTAVEHSTGYPASEIMGKNCRFLQGKDRNQPEINIIRAAISAKKE 396
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
C V + NYRKD S FWN L ISP+ N GK+
Sbjct: 397 CNVVLRNYRKDGSLFWNELFISPVFNNKGKL 427
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 80/152 (52%), Gaps = 6/152 (3%)
Query: 8 IEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGR 67
+E+ + Y + A++ + ITDP +PI++ + +G+ +EI+G+N R
Sbjct: 313 VERHRSEEYLHLLERAINSANNGIIITDPHQPDNPIIYFNTAVEHSTGYPASEIMGKNCR 372
Query: 68 MFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
QG N+ I IR AI ++ V L NY+KDG+ FW +S VF + G+ T+F+
Sbjct: 373 FLQGKDRNQPEINIIRAAISAKKECNVVLRNYRKDGSLFWNELFISPVFNNK-GKLTNFI 431
Query: 128 AVQVPIVSRKHMRNSGMSYSEDGGGSRLREIV 159
+Q I RK + + S++ RL++IV
Sbjct: 432 GIQKDISERKR-SEANLKKSQE----RLKKIV 458
>gi|448597109|ref|ZP_21654247.1| PAS-PAC-PAC sensing histidine kinase [Haloferax alexandrinus JCM
10717]
gi|445740990|gb|ELZ92495.1| PAS-PAC-PAC sensing histidine kinase [Haloferax alexandrinus JCM
10717]
Length = 858
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 52/76 (68%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322
D P+ Y +DAF ++TGYD +EV+G+NCRFL G DTD + + E++ ++ V + NY
Sbjct: 165 DQPLTYVNDAFEEMTGYDSSEVIGRNCRFLQGDDTDPEAVETLHEAVDAGESAAVGLTNY 224
Query: 323 RKDKSSFWNLLHISPI 338
RKD + FWN L ISP+
Sbjct: 225 RKDGTPFWNDLKISPV 240
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D TIT+ P+ + + F +M+G+ +E+IGRN R QG T+ + +
Sbjct: 149 AMDSATVGITITEAD-DDQPLTYVNDAFEEMTGYDSSEVIGRNCRFLQGDDTDPEAVETL 207
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
EA+ V L NY+KDGTPFW K+S V+ +DG THFV Q R +RN
Sbjct: 208 HEAVDAGESAAVGLTNYRKDGTPFWNDLKISPVY--DDGELTHFVGFQTDATVRHALRN 264
>gi|448572980|ref|ZP_21640658.1| PAS-PAC-PAC sensing histidine kinase [Haloferax lucentense DSM
14919]
gi|445719345|gb|ELZ71026.1| PAS-PAC-PAC sensing histidine kinase [Haloferax lucentense DSM
14919]
Length = 858
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 52/76 (68%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322
D P+ Y +DAF ++TGYD +EV+G+NCRFL G DTD + + E++ ++ V + NY
Sbjct: 165 DQPLTYVNDAFEEMTGYDSSEVIGRNCRFLQGDDTDPEAVETLHEAVDAGESAAVGLTNY 224
Query: 323 RKDKSSFWNLLHISPI 338
RKD + FWN L ISP+
Sbjct: 225 RKDGTPFWNDLKISPV 240
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D TIT+ P+ + + F +M+G+ +E+IGRN R QG T+ + +
Sbjct: 149 AMDSATVGITITEAD-DDQPLTYVNDAFEEMTGYDSSEVIGRNCRFLQGDDTDPEAVETL 207
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
EA+ V L NY+KDGTPFW K+S V+ +DG THFV Q R +RN
Sbjct: 208 HEAVDAGESAAVGLTNYRKDGTPFWNDLKISPVY--DDGELTHFVGFQTDATVRHALRN 264
>gi|448543401|ref|ZP_21624966.1| PAS-PAC-PAC sensing histidine kinase [Haloferax sp. ATCC BAA-646]
gi|448550427|ref|ZP_21628806.1| PAS-PAC-PAC sensing histidine kinase [Haloferax sp. ATCC BAA-645]
gi|448559347|ref|ZP_21633518.1| PAS-PAC-PAC sensing histidine kinase [Haloferax sp. ATCC BAA-644]
gi|445706538|gb|ELZ58416.1| PAS-PAC-PAC sensing histidine kinase [Haloferax sp. ATCC BAA-646]
gi|445711358|gb|ELZ63151.1| PAS-PAC-PAC sensing histidine kinase [Haloferax sp. ATCC BAA-644]
gi|445711428|gb|ELZ63220.1| PAS-PAC-PAC sensing histidine kinase [Haloferax sp. ATCC BAA-645]
Length = 858
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 52/76 (68%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322
D P+ Y +DAF ++TGYD +EV+G+NCRFL G DTD + + E++ ++ V + NY
Sbjct: 165 DQPLTYVNDAFEEMTGYDSSEVIGRNCRFLQGDDTDPEAVETLHEAVDAGESAAVGLTNY 224
Query: 323 RKDKSSFWNLLHISPI 338
RKD + FWN L ISP+
Sbjct: 225 RKDGTPFWNDLKISPV 240
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D TIT+ P+ + + F +M+G+ +E+IGRN R QG T+ + +
Sbjct: 149 AMDSATVGITITEAG-DDQPLTYVNDAFEEMTGYDSSEVIGRNCRFLQGDDTDPEAVETL 207
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
EA+ V L NY+KDGTPFW K+S V+ +DG THFV Q R +RN
Sbjct: 208 HEAVDAGESAAVGLTNYRKDGTPFWNDLKISPVY--DDGELTHFVGFQTDATVRHALRN 264
>gi|430757134|ref|YP_007208463.1| Photoactive flavo- yellow protein [Bacillus subtilis subsp.
subtilis str. BSP1]
gi|430021654|gb|AGA22260.1| Photoactive flavo- yellow protein [Bacillus subtilis subsp.
subtilis str. BSP1]
Length = 261
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 61/94 (64%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + V+ DP L D P+VY + F+++TGY+ E++G+NCRFL G TD + I
Sbjct: 19 ALDHARVGVVITDPALEDNPIVYVNQGFVQMTGYEAEEILGKNCRFLQGKHTDPAEVDNI 78
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIR 339
+ ++Q ++ T++I NY+KD + FWN L+I P+
Sbjct: 79 RTALQNKEPVTIQIQNYKKDGTMFWNELNIDPME 112
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +ALD ITDP++ +PIV+ ++GF++M+G+ EI+G+N R QG T+ +
Sbjct: 16 IKKALDHARVGVVITDPALEDNPIVYVNQGFVQMTGYEAEEILGKNCRFLQGKHTDPAEV 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
IR A++ + P+ + + NYKKDGT FW + + E T+FV +Q I +K
Sbjct: 76 DNIRTALQNKEPVTIQIQNYKKDGTMFWNELNIDPM---EIEDKTYFVGIQNDITKQKE 131
>gi|448390489|ref|ZP_21566112.1| multi-sensor signal transduction histidine kinase [Haloterrigena
salina JCM 13891]
gi|445666903|gb|ELZ19555.1| multi-sensor signal transduction histidine kinase [Haloterrigena
salina JCM 13891]
Length = 652
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P T+ D + S +P+V+A+ F +++G+SR EI+GRN R QG RT + E+
Sbjct: 321 AIDEAPIGITLCDATQSDNPLVYANDQFERITGYSREEILGRNCRFLQGERTEAEPVDEL 380
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
R AI ER V L NY+ DG+ FW ++ V E G T++V Q + RK
Sbjct: 381 RTAIDAERSTTVELRNYRTDGSEFWNRVTVAPVV-DERGTVTNYVGFQQDVTERKE 435
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 58/92 (63%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
L D D P+VYA+D F ++TGY R E++G+NCRFL G T+ + +++ +I E+
Sbjct: 329 ITLCDATQSDNPLVYANDQFERITGYSREEILGRNCRFLQGERTEAEPVDELRTAIDAER 388
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ TV + NYR D S FWN + ++P+ + G V
Sbjct: 389 STTVELRNYRTDGSEFWNRVTVAPVVDERGTV 420
>gi|170749732|ref|YP_001755992.1| signal transduction histidine kinase [Methylobacterium
radiotolerans JCM 2831]
gi|170656254|gb|ACB25309.1| signal transduction histidine kinase [Methylobacterium
radiotolerans JCM 2831]
Length = 503
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITDP +PIVF + F K++G+ EIIGRN R QG TN+ I +IR AI PI
Sbjct: 45 ITDPHQPDNPIVFVNAAFSKLTGYRHDEIIGRNCRFLQGAETNKADIAKIRAAIARRVPI 104
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
E+ LLN+KK G FW +S VF + DG T+F A Q +
Sbjct: 105 EIELLNHKKSGEVFWNRLLISPVFDR-DGELTYFFASQFDVT 145
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
Query: 240 SSSLYISLGRIKQSFVLI-DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
S+ ++S R + +LI DPH PD P+V+ + AF KLTGY +E++G+NCRFL G +T+
Sbjct: 28 STDPFVSAVRATRMPMLITDPHQPDNPIVFVNAAFSKLTGYRHDEIIGRNCRFLQGAETN 87
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +I+ +I + +LN++K FWN L ISP+ + G++
Sbjct: 88 KADIAKIRAAIARRVPIEIELLNHKKSGEVFWNRLLISPVFDRDGEL 134
>gi|448394478|ref|ZP_21568283.1| bacterio-opsin activator [Haloterrigena salina JCM 13891]
gi|445662520|gb|ELZ15288.1| bacterio-opsin activator [Haloterrigena salina JCM 13891]
Length = 643
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 59/92 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ DP D P+VY +DA+ ++TGY +EVVG+NCRFL G D+ + ++ +I E+
Sbjct: 149 ITISDPDREDNPLVYVNDAYQEITGYGYDEVVGRNCRFLQGEDSQEVAVAEMAAAIDEER 208
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV + NYR+D + FWN + I+P+R+ G V
Sbjct: 209 PVTVELKNYRRDGTEFWNEVTIAPVRDEDGTV 240
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P TI+DP +P+V+ + + +++G+ E++GRN R QG + + E+
Sbjct: 141 AINEAPVGITISDPDREDNPLVYVNDAYQEITGYGYDEVVGRNCRFLQGEDSQEVAVAEM 200
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
AI EERP+ V L NY++DGT FW ++ V EDG T++V Q + +RK
Sbjct: 201 AAAIDEERPVTVELKNYRRDGTEFWNEVTIAPVR-DEDGTVTNYVGFQNDVTARKEA 256
>gi|323139015|ref|ZP_08074075.1| transcriptional regulator with PAS/PAC sensors, AraC family
[Methylocystis sp. ATCC 49242]
gi|322395769|gb|EFX98310.1| transcriptional regulator with PAS/PAC sensors, AraC family
[Methylocystis sp. ATCC 49242]
Length = 490
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 60/92 (65%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
L DP L D P+VYA+ F +TGY E++G+NCRFL G D D L +++E+I QA
Sbjct: 369 TLTDPDLEDAPIVYANKRFEDITGYSVAEIIGRNCRFLQGQDRDQEGLRRLREAISNRQA 428
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
V + NYRKD + F N L+I+P+ +A G+++
Sbjct: 429 IEVTLRNYRKDGALFHNKLNITPLFDAQGQLI 460
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
LD + T+TDP + PIV+A++ F ++G+S AEIIGRN R QG ++ + +R
Sbjct: 361 LDTCVNGVTLTDPDLEDAPIVYANKRFEDITGYSVAEIIGRNCRFLQGQDRDQEGLRRLR 420
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
EAI + IEV L NY+KDG F ++ +F + G+ +F+ VQ + +
Sbjct: 421 EAISNRQAIEVTLRNYRKDGALFHNKLNITPLFDAQ-GQLIYFLGVQYDVTDQ 472
>gi|222481465|ref|YP_002567701.1| PAS/PAC sensor signal transduction histidine kinase [Halorubrum
lacusprofundi ATCC 49239]
gi|222454841|gb|ACM59104.1| PAS/PAC sensor signal transduction histidine kinase [Halorubrum
lacusprofundi ATCC 49239]
Length = 587
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 55/88 (62%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTV 317
DP PD P++ +D F LTGYDR E +G+NCRFL G T + ++ +I+ ++ TV
Sbjct: 134 DPSQPDNPLIQVNDGFCTLTGYDREEFLGRNCRFLQGEATREETVAEMGAAIEAQEPVTV 193
Query: 318 RILNYRKDKSSFWNLLHISPIRNASGKV 345
+ NYRKD S FWN + PIR+ SG V
Sbjct: 194 DLRNYRKDGSMFWNRVTTIPIRDDSGTV 221
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRR 77
L +A+D+ P T++DPS +P++ + GF ++G+ R E +GRN R QG T
Sbjct: 117 LLSEQAMDQAPIGITVSDPSQPDNPLIQVNDGFCTLTGYDREEFLGRNCRFLQGEATREE 176
Query: 78 TIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
T+ E+ AI + P+ V+L NY+KDG+ FW ++ + G ++F+ Q I + K
Sbjct: 177 TVAEMGAAIEAQEPVTVDLRNYRKDGSMFWNRV-TTIPIRDDSGTVSNFLGYQQNITNEK 235
>gi|452207021|ref|YP_007487143.1| sensor box histidine kinase [Natronomonas moolapensis 8.8.11]
gi|452083121|emb|CCQ36406.1| sensor box histidine kinase [Natronomonas moolapensis 8.8.11]
Length = 723
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 57/92 (61%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ D PD+P+VY +D+F +TGY E +G+NCRFL G TD + +++ +++ E+
Sbjct: 271 ITIADADEPDLPLVYINDSFEAITGYGPAESLGRNCRFLQGEGTDQRTVDRVRAALEAEE 330
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+V ILNYR D FWN L I P+ + G+V
Sbjct: 331 PVSVEILNYRADGEPFWNDLKIVPVTDGDGEV 362
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D TI D P+V+ + F ++G+ AE +GRN R QG T++RT+ +
Sbjct: 263 AMDGANVGITIADADEPDLPLVYINDSFEAITGYGPAESLGRNCRFLQGEGTDQRTVDRV 322
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
R A+ E P+ V +LNY+ DG PFW K+ V DG THF+ Q I R+
Sbjct: 323 RAALEAEEPVSVEILNYRADGEPFWNDLKIVPVTDG-DGEVTHFLGFQDDITERRQ 377
>gi|448622505|ref|ZP_21669199.1| bacterio-opsin activator [Haloferax denitrificans ATCC 35960]
gi|445754587|gb|EMA05992.1| bacterio-opsin activator [Haloferax denitrificans ATCC 35960]
Length = 659
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+DE P T+ D S+ P+V+ + F M+G+S +GRN R QGP T+ +
Sbjct: 136 EQAIDEAPVGITVADCSLPDRPLVYVNEAFETMTGYSADAALGRNCRYLQGPNTDPERVA 195
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
E+R AI E V LLNY+ +G FW ++ + G DG TH+V Q I R
Sbjct: 196 ELRRAIEAEESASVELLNYRANGETFWNRVDVAPLSGP-DGEVTHYVGFQTDITER 250
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 60/92 (65%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ D LPD P+VY ++AF +TGY + +G+NCR+L G +TD + +++ +I+ E+
Sbjct: 146 ITVADCSLPDRPLVYVNEAFETMTGYSADAALGRNCRYLQGPNTDPERVAELRRAIEAEE 205
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +V +LNYR + +FWN + ++P+ G+V
Sbjct: 206 SASVELLNYRANGETFWNRVDVAPLSGPDGEV 237
>gi|254505056|ref|ZP_05117207.1| hypothetical protein SADFL11_5096 [Labrenzia alexandrii DFL-11]
gi|222441127|gb|EEE47806.1| hypothetical protein SADFL11_5096 [Labrenzia alexandrii DFL-11]
Length = 124
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 59/94 (62%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
S V DP++PD PM++ SD F + TGY E VG+NCRFL G +T+ + I++ ++ +
Sbjct: 22 SVVFSDPNVPDNPMIFVSDEFERQTGYTSAEAVGRNCRFLQGPETNPFAIEAIRQGLKAQ 81
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
T+ ILNYRKD F N L I PI + G+++
Sbjct: 82 TRFTIDILNYRKDGMPFMNRLRIRPIIDGDGRLI 115
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
S +DP++ +P++F S F + +G++ AE +GRN R QGP TN I IR+ ++ +
Sbjct: 22 SVVFSDPNVPDNPMIFVSDEFERQTGYTSAEAVGRNCRFLQGPETNPFAIEAIRQGLKAQ 81
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+++LNY+KDG PF ++ + DGR F Q P+
Sbjct: 82 TRFTIDILNYRKDGMPFMNRLRIRPIIDG-DGRLIFFAGAQNPV 124
>gi|452208293|ref|YP_007488415.1| receiver/sensor box protein [Natronomonas moolapensis 8.8.11]
gi|452084393|emb|CCQ37735.1| receiver/sensor box protein [Natronomonas moolapensis 8.8.11]
Length = 652
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 55/85 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
L DP D P+VY ++AF ++TGY +G+NCRFL G DTD + I+++I E+
Sbjct: 275 ITLADPSEADRPLVYVNEAFEEMTGYPPERTLGRNCRFLQGEDTDPETVAAIRDAIDDEE 334
Query: 314 ACTVRILNYRKDKSSFWNLLHISPI 338
+ +V + NYRKD + FWN L ++PI
Sbjct: 335 SISVELRNYRKDGTEFWNRLTVTPI 359
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 67/121 (55%), Gaps = 3/121 (2%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+D+ T+ DPS + P+V+ + F +M+G+ +GRN R QG T+ T+
Sbjct: 265 QQAIDDADVPITLADPSEADRPLVYVNEAFEEMTGYPPERTLGRNCRFLQGEDTDPETVA 324
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK-HM 139
IR+AI +E I V L NY+KDGT FW ++ ++ +DG ++ Q + +K H
Sbjct: 325 AIRDAIDDEESISVELRNYRKDGTEFWNRLTVTPIY--DDGELVRYLGTQRDVTEQKTHE 382
Query: 140 R 140
R
Sbjct: 383 R 383
>gi|333983401|ref|YP_004512611.1| PAS sensor protein [Methylomonas methanica MC09]
gi|333807442|gb|AEG00112.1| PAS sensor protein [Methylomonas methanica MC09]
Length = 150
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 62/110 (56%)
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G I L L L DP L D P++YA+ AF +LTGY + E+VG NCRFL G D
Sbjct: 10 GIIPQVLSAILDECVNGVTLADPDLEDAPIIYANKAFERLTGYSQEEIVGHNCRFLQGED 69
Query: 297 TDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ Y+I E+++ +Q V + NYRKD + F N L + P+ + +V+
Sbjct: 70 REQPARYKIAEAMRKQQGVEVTLRNYRKDGTLFHNHLKVIPLFDKKQRVI 119
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
LDE + T+ DP + PI++A++ F +++G+S+ EI+G N R QG + +I
Sbjct: 20 LDECVNGVTLADPDLEDAPIIYANKAFERLTGYSQEEIVGHNCRFLQGEDREQPARYKIA 79
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143
EA+R+++ +EV L NY+KDGT F K+ +F K+ R +++ VQ I + +N
Sbjct: 80 EAMRKQQGVEVTLRNYRKDGTLFHNHLKVIPLFDKKQ-RVIYYLGVQYDITQQVDAKNEI 138
Query: 144 MSYSE 148
S +E
Sbjct: 139 KSLTE 143
>gi|344211121|ref|YP_004795441.1| HTR-like protein [Haloarcula hispanica ATCC 33960]
gi|343782476|gb|AEM56453.1| HTR-like protein [Haloarcula hispanica ATCC 33960]
Length = 726
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 60/92 (65%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
V+ DP D P++YA+D + LTGY E++G+NCR L G +TD + ++++I E+
Sbjct: 285 VITDPGQTDNPLIYANDHYRDLTGYSLPELLGKNCRMLQGENTDPESVATMRDAIDAEER 344
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
TV + NYRK+ + FWN + I+P+R+ G V+
Sbjct: 345 VTVELRNYRKNGTEFWNRVRIAPVRDDDGAVV 376
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P ITDP + +P+++A+ + ++G+S E++G+N RM QG T+ ++ +
Sbjct: 276 AIDEAPVGVVITDPGQTDNPLIYANDHYRDLTGYSLPELLGKNCRMLQGENTDPESVATM 335
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R+AI E + V L NY+K+GT FW +++ V +DG ++V Q I RK
Sbjct: 336 RDAIDAEERVTVELRNYRKNGTEFWNRVRIAPVR-DDDGAVVNYVGFQQDITERK 389
>gi|448473479|ref|ZP_21601621.1| PAS-PAC-PAC sensing histidine kinase [Halorubrum aidingense JCM
13560]
gi|445818991|gb|EMA68840.1| PAS-PAC-PAC sensing histidine kinase [Halorubrum aidingense JCM
13560]
Length = 981
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 59/83 (71%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322
D P+ Y +DAF++++GY+R EV+G+NCRFL G +TD + ++ ++I + +V + NY
Sbjct: 162 DQPLTYVNDAFVEISGYNREEVLGRNCRFLQGEETDPESVQRLHDAIDAGETVSVELRNY 221
Query: 323 RKDKSSFWNLLHISPIRNASGKV 345
RKD + FWN L I+P+ + +G++
Sbjct: 222 RKDGTEFWNHLEIAPVYDHTGEL 244
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D+ I D + P+ + + F+++SG++R E++GRN R QG T+ ++ +
Sbjct: 146 AMDDSTAGIAIADAD-NDQPLTYVNDAFVEISGYNREEVLGRNCRFLQGEETDPESVQRL 204
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+AI + V L NY+KDGT FW +++ V+ G TH++ Q + +R+
Sbjct: 205 HDAIDAGETVSVELRNYRKDGTEFWNHLEIAPVY-DHTGELTHYIGFQSDVTARRQ 259
>gi|448342979|ref|ZP_21531921.1| bacterio-opsin activator [Natrinema gari JCM 14663]
gi|445624039|gb|ELY77428.1| bacterio-opsin activator [Natrinema gari JCM 14663]
Length = 630
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 62/92 (67%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ DP D P+VY ++A+ ++TGY+ +EVVG+NCRFL G D+D + ++ +I ++
Sbjct: 143 ITISDPDREDNPLVYVNEAYEEMTGYEFDEVVGRNCRFLQGEDSDEAAIAEMAAAIDEDR 202
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV + NYRKD + FWN + I+P+R+ G+V
Sbjct: 203 PVTVELKNYRKDGTEFWNEVTIAPVRDEDGRV 234
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL+E P TI+DP +P+V+ + + +M+G+ E++GRN R QG ++ I E+
Sbjct: 135 ALEEAPVGITISDPDREDNPLVYVNEAYEEMTGYEFDEVVGRNCRFLQGEDSDEAAIAEM 194
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
AI E+RP+ V L NY+KDGT FW ++ V EDGR T++V Q I +RK
Sbjct: 195 AAAIDEDRPVTVELKNYRKDGTEFWNEVTIAPVR-DEDGRVTNYVGFQNDITARKE 249
>gi|448339592|ref|ZP_21528610.1| bacterio-opsin activator [Natrinema pallidum DSM 3751]
gi|445619581|gb|ELY73108.1| bacterio-opsin activator [Natrinema pallidum DSM 3751]
Length = 649
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL+E P TI+DP +P+V+ + + +M+G+ E++GRN R QG ++ I ++
Sbjct: 135 ALEEAPVGITISDPDREDNPLVYVNEAYEEMTGYEFDEVVGRNCRFLQGEDSDEAAIADM 194
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
AI E+RP+ V L NY+KDGT FW ++ V EDGR T++V Q I +RK
Sbjct: 195 AAAIDEDRPVTVELKNYRKDGTEFWNEVTIAPVR-DEDGRVTNYVGFQNDITARKE 249
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 61/92 (66%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ DP D P+VY ++A+ ++TGY+ +EVVG+NCRFL G D+D + + +I ++
Sbjct: 143 ITISDPDREDNPLVYVNEAYEEMTGYEFDEVVGRNCRFLQGEDSDEAAIADMAAAIDEDR 202
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV + NYRKD + FWN + I+P+R+ G+V
Sbjct: 203 PVTVELKNYRKDGTEFWNEVTIAPVRDEDGRV 234
>gi|448311400|ref|ZP_21501163.1| bacterio-opsin activator [Natronolimnobius innermongolicus JCM
12255]
gi|445605017|gb|ELY58953.1| bacterio-opsin activator [Natronolimnobius innermongolicus JCM
12255]
Length = 645
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 61/92 (66%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ DP L D P+VY +DA+ ++TGY +EVVG+NCRFL G D+ + ++ +I ++
Sbjct: 152 ITISDPALEDNPLVYINDAYQEITGYGYDEVVGRNCRFLQGEDSSEAAIAEMAAAIDEDR 211
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV + NYRKD + FWN + I+P+R+ +G V
Sbjct: 212 PVTVELKNYRKDGTEFWNEVTIAPVRDETGTV 243
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
++E P TI+DP++ +P+V+ + + +++G+ E++GRN R QG ++ I E+
Sbjct: 145 INEAPVGITISDPALEDNPLVYINDAYQEITGYGYDEVVGRNCRFLQGEDSSEAAIAEMA 204
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
AI E+RP+ V L NY+KDGT FW ++ V E G TH+V Q + +RK
Sbjct: 205 AAIDEDRPVTVELKNYRKDGTEFWNEVTIAPVR-DETGTVTHYVGFQNDVTARKEA 259
>gi|397775745|ref|YP_006543291.1| PAS sensor protein [Natrinema sp. J7-2]
gi|397684838|gb|AFO59215.1| PAS sensor protein [Natrinema sp. J7-2]
Length = 630
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 62/92 (67%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ DP D P+VY ++A+ ++TGY+ +EVVG+NCRFL G D+D + ++ +I ++
Sbjct: 143 ITISDPDREDNPLVYVNEAYEEMTGYEFDEVVGRNCRFLQGEDSDEAAIAEMAAAIDEDR 202
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV + NYRKD + FWN + I+P+R+ G+V
Sbjct: 203 PVTVELKNYRKDGTEFWNEVTIAPVRDEDGRV 234
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL+E P TI+DP +P+V+ + + +M+G+ E++GRN R QG ++ I E+
Sbjct: 135 ALEEAPVGITISDPDREDNPLVYVNEAYEEMTGYEFDEVVGRNCRFLQGEDSDEAAIAEM 194
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
AI E+RP+ V L NY+KDGT FW ++ V EDGR T++V Q I +RK
Sbjct: 195 AAAIDEDRPVTVELKNYRKDGTEFWNEVTIAPVR-DEDGRVTNYVGFQNDITARKE 249
>gi|298711143|emb|CBJ32369.1| putative blue light receptor [Ectocarpus siliculosus]
Length = 135
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 73/121 (60%), Gaps = 4/121 (3%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
S+ +TDP + +PI+F S GF + +G+++ E+ GRN R QG +T+ I +IREA+++
Sbjct: 11 SYCVTDPDLEDNPIIFCSDGFAEFTGYAKEEVEGRNCRFLQGAKTDPGDIAKIREAVKQN 70
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR---KHMRNSGMSY 146
+ + LLNYKKDG+ F F ++ +F E G +F+ +QV + + + N G Y
Sbjct: 71 KEACLCLLNYKKDGSTFHNQFFLTPLF-DEAGTLAYFLGIQVQVKTASDGQEPENPGWIY 129
Query: 147 S 147
+
Sbjct: 130 T 130
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 60/93 (64%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
S+ + DP L D P+++ SD F + TGY + EV G+NCRFL G TD + +I+E+++
Sbjct: 11 SYCVTDPDLEDNPIIFCSDGFAEFTGYAKEEVEGRNCRFLQGAKTDPGDIAKIREAVKQN 70
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ + +LNY+KD S+F N ++P+ + +G +
Sbjct: 71 KEACLCLLNYKKDGSTFHNQFFLTPLFDEAGTL 103
>gi|448344651|ref|ZP_21533556.1| bacterio-opsin activator [Natrinema altunense JCM 12890]
gi|445637558|gb|ELY90707.1| bacterio-opsin activator [Natrinema altunense JCM 12890]
Length = 629
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 62/92 (67%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ DP D P+VY ++A+ ++TGY+ +EVVG+NCRFL G D+D + ++ +I ++
Sbjct: 143 ITISDPDREDNPLVYVNEAYEEMTGYEFDEVVGRNCRFLQGEDSDEAAIAEMAAAIDEDR 202
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV + NYRKD + FWN + I+P+R+ G+V
Sbjct: 203 PVTVELKNYRKDGTEFWNEVTIAPVRDEDGRV 234
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL+E P TI+DP +P+V+ + + +M+G+ E++GRN R QG ++ I E+
Sbjct: 135 ALEEAPVGITISDPDREDNPLVYVNEAYEEMTGYEFDEVVGRNCRFLQGEDSDEAAIAEM 194
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
AI E+RP+ V L NY+KDGT FW ++ V EDGR T++V Q I +RK
Sbjct: 195 AAAIDEDRPVTVELKNYRKDGTEFWNEVTIAPVR-DEDGRVTNYVGFQNDITARKE 249
>gi|119484845|ref|ZP_01619327.1| Multi-sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC
8106]
gi|119457663|gb|EAW38787.1| Multi-sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC
8106]
Length = 1211
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 59/92 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ D D P++Y + F ++TGY +++ G+NCRFL G DTD + I+ S++ +
Sbjct: 359 IVISDAKAKDNPIIYCNPTFERITGYSSSDIQGRNCRFLQGNDTDPQAIETIRNSLREAK 418
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
C V + NYRKD + FWN L ISP+R+ +G+V
Sbjct: 419 DCLVTLKNYRKDGTPFWNELAISPVRDTTGEV 450
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+ P I+D +PI++ + F +++G+S ++I GRN R QG T+ + I I
Sbjct: 351 AIAASPSGIVISDAKAKDNPIIYCNPTFERITGYSSSDIQGRNCRFLQGNDTDPQAIETI 410
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R ++RE + V L NY+KDGTPFW +S V G THF+ +Q I RK
Sbjct: 411 RNSLREAKDCLVTLKNYRKDGTPFWNELAISPV-RDTTGEVTHFIGIQTDISERK 464
>gi|408355750|ref|YP_006844281.1| blue-light photoreceptor [Amphibacillus xylanus NBRC 15112]
gi|407726521|dbj|BAM46519.1| putative blue-light photoreceptor [Amphibacillus xylanus NBRC
15112]
Length = 253
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 71/116 (61%), Gaps = 3/116 (2%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
EAL+ ITDP+ HPI+FA++G+ ++G+ E+IG+NGR+ QG T+ + I
Sbjct: 12 EALNHTNVGLIITDPNQDHHPIIFANKGYANLTGYEIDEVIGKNGRLLQGEETDPKVINT 71
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+++AI+ E+ I V + NYKK+G FW K+++ DG+ ++V VQ I K
Sbjct: 72 LKQAIKAEQSITVEIYNYKKNGEGFWN--KLTIDPMWVDGKL-YYVGVQKDITETK 124
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 58/93 (62%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L ++ DP+ P+++A+ + LTGY+ +EV+G+N R L G +TD V+ +
Sbjct: 13 ALNHTNVGLIITDPNQDHHPIIFANKGYANLTGYEIDEVIGKNGRLLQGEETDPKVINTL 72
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
K++I+ EQ+ TV I NY+K+ FWN L I P+
Sbjct: 73 KQAIKAEQSITVEIYNYKKNGEGFWNKLTIDPM 105
>gi|409992366|ref|ZP_11275561.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
[Arthrospira platensis str. Paraca]
gi|409936779|gb|EKN78248.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
[Arthrospira platensis str. Paraca]
Length = 1276
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 60/93 (64%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ D D +++A+ F K+TGY R++V+G+NCRFL G D+D L +++ +I+
Sbjct: 343 RNGIIITDATDSDNRVIFANSGFEKITGYSRHQVIGRNCRFLQGKDSDPKALAELRNAIE 402
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+ C + + NYR D SSFWN L ISP+ N+ G
Sbjct: 403 QGRECNIELQNYRPDGSSFWNELSISPVYNSQG 435
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 73/126 (57%), Gaps = 1/126 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ + ITD + S + ++FA+ GF K++G+SR ++IGRN R QG ++ + + E+
Sbjct: 338 AINSSRNGIIITDATDSDNRVIFANSGFEKITGYSRHQVIGRNCRFLQGKDSDPKALAEL 397
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R AI + R + L NY+ DG+ FW +S V+ + G THF+ +Q I K +
Sbjct: 398 RNAIEQGRECNIELQNYRPDGSSFWNELSISPVYNSQ-GFLTHFIGIQTDISDHKQAEVT 456
Query: 143 GMSYSE 148
+S S+
Sbjct: 457 LLSKSQ 462
>gi|291566948|dbj|BAI89220.1| hypothetical protein [Arthrospira platensis NIES-39]
Length = 1276
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 60/93 (64%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ D D +++A+ F K+TGY R++V+G+NCRFL G D+D L +++ +I+
Sbjct: 343 RNGIIITDATDSDNRVIFANSGFEKITGYSRHQVIGRNCRFLQGKDSDPKALAELRNAIE 402
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+ C + + NYR D SSFWN L ISP+ N+ G
Sbjct: 403 QGRECNIELQNYRPDGSSFWNELSISPVYNSQG 435
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 73/126 (57%), Gaps = 1/126 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ + ITD + S + ++FA+ GF K++G+SR ++IGRN R QG ++ + + E+
Sbjct: 338 AINSSRNGIIITDATDSDNRVIFANSGFEKITGYSRHQVIGRNCRFLQGKDSDPKALAEL 397
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R AI + R + L NY+ DG+ FW +S V+ + G THF+ +Q I K +
Sbjct: 398 RNAIEQGRECNIELQNYRPDGSSFWNELSISPVYNSQ-GFLTHFIGIQTDISDHKQAEVT 456
Query: 143 GMSYSE 148
+S S+
Sbjct: 457 LLSKSQ 462
>gi|242345213|dbj|BAH80320.1| aureochrome1-like protein [Fucus distichus subsp. evanescens]
Length = 198
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 59/91 (64%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+AL + ITD S++ +PIVFAS GFL+++ ++ E++GRN R QGP T+ R + +
Sbjct: 108 KALQTAQQNSVITDASLADNPIVFASSGFLELTRYTLTEVLGRNCRFLQGPETDPRAVDK 167
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKM 112
IR AI E V LLNY+ DGT FW LF +
Sbjct: 168 IRTAIEEGCDTSVCLLNYRADGTTFWNLFHL 198
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 61/94 (64%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
SL +L +Q+ V+ D L D P+V+AS FL+LT Y EV+G+NCRFL G +TD
Sbjct: 105 SLVKALQTAQQNSVITDASLADNPIVFASSGFLELTRYTLTEVLGRNCRFLQGPETDPRA 164
Query: 302 LYQIKESIQTEQACTVRILNYRKDKSSFWNLLHI 335
+ +I+ +I+ +V +LNYR D ++FWNL H+
Sbjct: 165 VDKIRTAIEEGCDTSVCLLNYRADGTTFWNLFHL 198
>gi|427730175|ref|YP_007076412.1| PAS domain-containing protein [Nostoc sp. PCC 7524]
gi|427366094|gb|AFY48815.1| PAS domain S-box [Nostoc sp. PCC 7524]
Length = 1712
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 62/100 (62%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L V+ D L + P++Y + AF ++TGY +V+GQNCRFL DTD L ++
Sbjct: 447 ALAATNNGIVIADARLANNPVIYVNSAFEQITGYSATDVIGQNCRFLQSTDTDQPALQKL 506
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ ++++ + C + + NYRKD S FWN L ISPI + +G +
Sbjct: 507 RLALKSGKDCQLILRNYRKDGSLFWNELSISPIYDETGTL 546
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 93/189 (49%), Gaps = 27/189 (14%)
Query: 3 SQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEII 62
+ L L+E++ R AL + I D ++ +P+++ + F +++G+S ++I
Sbjct: 432 TDLKLVEETLRLR-----ERALAATNNGIVIADARLANNPVIYVNSAFEQITGYSATDVI 486
Query: 63 GRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGR 122
G+N R Q T++ + ++R A++ + ++ L NY+KDG+ FW +S ++ E G
Sbjct: 487 GQNCRFLQSTDTDQPALQKLRLALKSGKDCQLILRNYRKDGSLFWNELSISPIY-DETGT 545
Query: 123 ATHFVAVQVPIVSRK----HMRNSGMSYSE---------------DGGGSRLREIVFGSC 163
THF+ +Q + R+ +R ++++ D + +R +FG
Sbjct: 546 LTHFLGIQSDVSDRQTAEMALRRQALTFANIYDAVIITDLKGQILDWNPAAVR--IFGYT 603
Query: 164 RREVCSDSL 172
+ E+C S+
Sbjct: 604 KAEICGQSV 612
>gi|381152639|ref|ZP_09864508.1| PAS domain S-box [Methylomicrobium album BG8]
gi|380884611|gb|EIC30488.1| PAS domain S-box [Methylomicrobium album BG8]
Length = 538
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITD HPI++A+ F +M+G+SR E+IG N R+ QGP T+ I IR+AIRE +P
Sbjct: 177 ITDAKRKNHPIIYANPAFSQMTGYSREELIGLNPRILQGPETDPEAIETIRQAIREGKPC 236
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
L N++K+GT FW +S V+ G TH++ VQ +
Sbjct: 237 LTTLKNHRKNGTIFWNELFISPVYDSR-GNLTHWIGVQTDVTQ 278
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 57/92 (61%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ D + P++YA+ AF ++TGY R E++G N R L G +TD + I+++I+ +
Sbjct: 175 IIITDAKRKNHPIIYANPAFSQMTGYSREELIGLNPRILQGPETDPEAIETIRQAIREGK 234
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
C + N+RK+ + FWN L ISP+ ++ G +
Sbjct: 235 PCLTTLKNHRKNGTIFWNELFISPVYDSRGNL 266
>gi|383619882|ref|ZP_09946288.1| PAS/PAC sensor protein [Halobiforma lacisalsi AJ5]
gi|448696567|ref|ZP_21697979.1| PAS/PAC sensor protein [Halobiforma lacisalsi AJ5]
gi|445783195|gb|EMA34030.1| PAS/PAC sensor protein [Halobiforma lacisalsi AJ5]
Length = 1462
Score = 89.0 bits (219), Expect = 3e-15, Method: Composition-based stats.
Identities = 46/107 (42%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ P TITDP +PIV+A+ F +++G+S AE +GRN R QG T+ I E+R
Sbjct: 335 LEYAPIGVTITDPDEPDNPIVYANEEFERLTGYSPAEYLGRNCRFLQGEETDPERIGELR 394
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
EA+ V L NY+ DGTPFW ++ EDG THFV Q
Sbjct: 395 EAVEAAEQTTVELRNYRADGTPFWNRVTVT-PLEDEDGAVTHFVGFQ 440
Score = 87.0 bits (214), Expect = 1e-14, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 59/90 (65%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315
+ DP PD P+VYA++ F +LTGY E +G+NCRFL G +TD + +++E+++ +
Sbjct: 344 ITDPDEPDNPIVYANEEFERLTGYSPAEYLGRNCRFLQGEETDPERIGELREAVEAAEQT 403
Query: 316 TVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV + NYR D + FWN + ++P+ + G V
Sbjct: 404 TVELRNYRADGTPFWNRVTVTPLEDEDGAV 433
>gi|448605763|ref|ZP_21658389.1| bacterio-opsin activator [Haloferax sulfurifontis ATCC BAA-897]
gi|445741789|gb|ELZ93288.1| bacterio-opsin activator [Haloferax sulfurifontis ATCC BAA-897]
Length = 606
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+DE P T+ D S+ P+V+ + F M+G+S +GRN R QGP T+ +
Sbjct: 83 EQAIDEAPVGITVADCSLPDRPLVYVNEAFETMTGYSADAALGRNCRYLQGPNTDPARVA 142
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
E+R AI E V LLNY+ +G FW ++ + G DG TH+V Q I R
Sbjct: 143 ELRRAIEAEESASVELLNYRANGETFWNRVDVAPLSGP-DGEVTHYVGFQTDITER 197
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 60/92 (65%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ D LPD P+VY ++AF +TGY + +G+NCR+L G +TD + +++ +I+ E+
Sbjct: 93 ITVADCSLPDRPLVYVNEAFETMTGYSADAALGRNCRYLQGPNTDPARVAELRRAIEAEE 152
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +V +LNYR + +FWN + ++P+ G+V
Sbjct: 153 SASVELLNYRANGETFWNRVDVAPLSGPDGEV 184
>gi|449304795|gb|EMD00802.1| hypothetical protein BAUCODRAFT_61939 [Baudoinia compniacensis UAMH
10762]
Length = 580
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 61/96 (63%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+ + + + DP LPD P+VYAS+ F T Y R+ V+G+NCRFL G + + + ++ E++
Sbjct: 184 LAEVYCVTDPSLPDNPIVYASEEFYNTTQYGRDYVIGRNCRFLQGPKSSNSTVRRLIEAL 243
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
T Q ILNYR+D S F NLL I+P+ + G+V
Sbjct: 244 TTGQEICETILNYRRDGSPFMNLLMIAPLYDNKGQV 279
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ E + L + + +TDPS+ +PIV+AS F + + R +IGRN R QGP+++ T+
Sbjct: 177 MRELVPSLAEVYCVTDPSLPDNPIVYASEEFYNTTQYGRDYVIGRNCRFLQGPKSSNSTV 236
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+ EA+ + I +LNY++DG+PF L ++ ++ + G+ +F+ Q+
Sbjct: 237 RRLIEALTTGQEICETILNYRRDGSPFMNLLMIAPLYDNK-GQVRYFLGCQI 287
>gi|443472907|ref|ZP_21062932.1| diguanylate cyclase/phosphodiesterase [Pseudomonas pseudoalcaligenes
KF707]
gi|442903470|gb|ELS28761.1| diguanylate cyclase/phosphodiesterase [Pseudomonas pseudoalcaligenes
KF707]
Length = 1895
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 2/115 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
I D S PI++ + F +++G+S E +GRN R QGP + I EIR A+ E+R +
Sbjct: 1204 ICDASAPDLPIIYVNPAFERITGYSAGETLGRNCRFLQGPDREQTGIAEIRRALEEQREV 1263
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYS 147
V L N++KDGTPFW ++ V E GR THF+ VQ I +K + S ++Y+
Sbjct: 1264 HVVLRNFRKDGTPFWNDLYIAPV-PDEHGRITHFIGVQNDISEQKRV-ESELAYN 1316
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 61/91 (67%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
++ D PD+P++Y + AF ++TGY E +G+NCRFL G D + T + +I+ +++ ++
Sbjct: 1203 LICDASAPDLPIIYVNPAFERITGYSAGETLGRNCRFLQGPDREQTGIAEIRRALEEQRE 1262
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
V + N+RKD + FWN L+I+P+ + G++
Sbjct: 1263 VHVVLRNFRKDGTPFWNDLYIAPVPDEHGRI 1293
>gi|448643771|ref|ZP_21678903.1| PAS domain S-box [Haloarcula sinaiiensis ATCC 33800]
gi|445758223|gb|EMA09546.1| PAS domain S-box [Haloarcula sinaiiensis ATCC 33800]
Length = 870
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 58/93 (62%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
L+DP D P+VY +DAF TGY E +G+NCRFL G DTD + I+++I E+
Sbjct: 278 ITLVDPSQEDNPLVYINDAFEDATGYPSAEALGRNCRFLQGEDTDPEKVTAIRDAIDDEE 337
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ + NY++D + FWN L ++PI + SG ++
Sbjct: 338 PIALELRNYQRDGTEFWNHLTLTPIYDDSGDLV 370
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T+ DPS +P+V+ + F +G+ AE +GRN R QG T+ + IR+AI +E
Sbjct: 278 ITLVDPSQEDNPLVYINDAFEDATGYPSAEALGRNCRFLQGEDTDPEKVTAIRDAIDDEE 337
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
PI + L NY++DGT FW ++ ++ + G ++ Q I
Sbjct: 338 PIALELRNYQRDGTEFWNHLTLTPIY-DDSGDLVRYIGTQEDIT 380
>gi|124267680|ref|YP_001021684.1| signal transduction histidine kinase-like protein [Methylibium
petroleiphilum PM1]
gi|124260455|gb|ABM95449.1| signal transduction histidine kinase-like protein [Methylibium
petroleiphilum PM1]
Length = 1317
Score = 89.0 bits (219), Expect = 3e-15, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 63/91 (69%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
V+ D PD+P++YA+ AF +L+G ++V+G+NCRFL D D L +++E++ E+A
Sbjct: 556 VVADATQPDLPLIYANTAFERLSGLPLDQVIGRNCRFLQAGDRDQPGLTRLREALAAERA 615
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
C+V + N R D +SF N LH++P+R+ G+V
Sbjct: 616 CSVTLRNQRADGTSFINELHVAPVRDTLGRV 646
Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
EA LP + D + P+++A+ F ++SG ++IGRN R Q ++ +
Sbjct: 548 EAEAALP--MVVADATQPDLPLIYANTAFERLSGLPLDQVIGRNCRFLQAGDRDQPGLTR 605
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+REA+ ER V L N + DGT F ++ V GR TH+V VQ + R
Sbjct: 606 LREALAAERACSVTLRNQRADGTSFINELHVAPV-RDTLGRVTHYVGVQHDVTER 659
>gi|406866633|gb|EKD19672.1| nonphototropic hypocotyl 1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 606
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 59/92 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
F L DP D P+ +ASD F+ +TGY R ++V +NCRFL G TD + +++ SI +
Sbjct: 262 FCLTDPKTADNPIRFASDGFVAVTGYSRRDIVPRNCRFLQGDRTDRVAVRRLRASIDACE 321
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+LNYRK+ FWNLL+++P+ + SG+V
Sbjct: 322 ETVELLLNYRKNGDPFWNLLYVAPLLDESGEV 353
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 65/106 (61%), Gaps = 3/106 (2%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L D F +TDP + +PI FAS GF+ ++G+SR +I+ RN R QG RT+R + +R +I
Sbjct: 258 LGDCFCLTDPKTADNPIRFASDGFVAVTGYSRRDIVPRNCRFLQGDRTDRVAVRRLRASI 317
Query: 87 RE-ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
E +E+ LLNY+K+G PFW L ++ + E G F+ Q+
Sbjct: 318 DACEETVEL-LLNYRKNGDPFWNLLYVAPLL-DESGEVCFFLGGQI 361
>gi|255084467|ref|XP_002508808.1| predicted protein [Micromonas sp. RCC299]
gi|226524085|gb|ACO70066.1| predicted protein [Micromonas sp. RCC299]
Length = 1097
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 62/107 (57%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
++S +++ +++ + D LPD P+VYA+ F +TGY E VG NCRFL G T+
Sbjct: 204 LASLKELAMDSVQEGVTIADFSLPDQPLVYANHGFELITGYSIEETVGHNCRFLQGPGTE 263
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ I+ I CTV++ NYRK+ F N L ++PIR A G+V
Sbjct: 264 PEKVEHIRRCINAGLPCTVQLKNYRKNGEEFVNYLSLTPIRTARGRV 310
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D + + TI D S+ P+V+A+ GF ++G+S E +G N R QGP T + I
Sbjct: 211 AMDSVQEGVTIADFSLPDQPLVYANHGFELITGYSIEETVGHNCRFLQGPGTEPEKVEHI 270
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
R I P V L NY+K+G F ++ + GR TH+V +Q
Sbjct: 271 RRCINAGLPCTVQLKNYRKNGEEFVNYLSLTPIRTAR-GRVTHYVGIQ 317
>gi|241518298|ref|YP_002978926.1| hypothetical protein Rleg_5559 [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240862711|gb|ACS60375.1| signal transduction histidine kinase [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 342
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 61/102 (59%)
Query: 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQ 304
I+ R + V+ D D P+V A+ AFL+LTGY+ EV+G NCRFL G T +
Sbjct: 31 IAFERTRMPMVVTDARKSDQPIVLANKAFLELTGYEAEEVLGHNCRFLQGPATSPIAAAE 90
Query: 305 IKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
I+ +I E+ ++ ILNY+K FWN LH+SP+ G++L
Sbjct: 91 IRAAIAGEREISIEILNYKKSGEQFWNRLHLSPVHGDDGRIL 132
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+TD S PIV A++ FL+++G+ E++G N R QGP T+ EIR AI ER
Sbjct: 40 MVVTDARKSDQPIVLANKAFLELTGYEAEEVLGHNCRFLQGPATSPIAAAEIRAAIAGER 99
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
I + +LNYKK G FW +S V G +DGR +F Q+
Sbjct: 100 EISIEILNYKKSGEQFWNRLHLSPVHG-DDGRILYFFGSQI 139
>gi|359454681|ref|ZP_09243954.1| sensor protein [Pseudoalteromonas sp. BSi20495]
gi|358048281|dbj|GAA80203.1| sensor protein [Pseudoalteromonas sp. BSi20495]
Length = 1098
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+I D + G P+VF + F K++G+ + ++IG+N R QGP T++++I I+ AI+ +
Sbjct: 445 ISIADAKVPGLPLVFLNSEFEKITGYKKEDMIGKNCRALQGPNTDKKSISVIKNAIKTLK 504
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
V ++NYKKDGT FW ++S VF E + T FV +Q I R
Sbjct: 505 TQRVEIVNYKKDGTAFWNSLQISPVFD-EHSKLTAFVGIQQDITKR 549
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 58/88 (65%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTV 317
D +P +P+V+ + F K+TGY + +++G+NCR L G +TD + IK +I+T + V
Sbjct: 449 DAKVPGLPLVFLNSEFEKITGYKKEDMIGKNCRALQGPNTDKKSISVIKNAIKTLKTQRV 508
Query: 318 RILNYRKDKSSFWNLLHISPIRNASGKV 345
I+NY+KD ++FWN L ISP+ + K+
Sbjct: 509 EIVNYKKDGTAFWNSLQISPVFDEHSKL 536
>gi|448543688|ref|ZP_21625242.1| bacterio-opsin activator [Haloferax sp. ATCC BAA-646]
gi|448550780|ref|ZP_21629083.1| bacterio-opsin activator [Haloferax sp. ATCC BAA-645]
gi|448558827|ref|ZP_21633240.1| bacterio-opsin activator [Haloferax sp. ATCC BAA-644]
gi|445706411|gb|ELZ58294.1| bacterio-opsin activator [Haloferax sp. ATCC BAA-646]
gi|445711285|gb|ELZ63079.1| bacterio-opsin activator [Haloferax sp. ATCC BAA-645]
gi|445712060|gb|ELZ63845.1| bacterio-opsin activator [Haloferax sp. ATCC BAA-644]
Length = 658
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+DE P TI D S+ P+V+ + F M+G+S +GRN R QGP T+ +
Sbjct: 136 EQAIDEAPVGITIADCSLPDRPLVYVNEAFETMTGYSADAALGRNCRYLQGPNTDPERVA 195
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+R AI E V LLNY+ +G FW ++ + G DG TH+V Q I R
Sbjct: 196 ALRRAIEAEESASVELLNYRANGETFWNRVDIAPLSGP-DGEVTHYVGFQTDITER 250
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 59/92 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ D LPD P+VY ++AF +TGY + +G+NCR+L G +TD + ++ +I+ E+
Sbjct: 146 ITIADCSLPDRPLVYVNEAFETMTGYSADAALGRNCRYLQGPNTDPERVAALRRAIEAEE 205
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +V +LNYR + +FWN + I+P+ G+V
Sbjct: 206 SASVELLNYRANGETFWNRVDIAPLSGPDGEV 237
>gi|448308287|ref|ZP_21498165.1| bacterio-opsin activator [Natronorubrum bangense JCM 10635]
gi|445594293|gb|ELY48459.1| bacterio-opsin activator [Natronorubrum bangense JCM 10635]
Length = 646
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 15/160 (9%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P TI+DP + +P+V+ + + M+G+S E++GRN R QG ++ I E+
Sbjct: 144 AINEAPVGITISDPDLEDNPLVYVNDAYRDMTGYSFDEVVGRNCRFLQGEDSSEEAIAEM 203
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM--- 139
AI E+ P+ V L NY+KDGTPFW ++ V +DG TH+V Q + +RK
Sbjct: 204 AAAIDEDYPVTVELKNYRKDGTPFWNEVTIAPVR-DDDGTVTHYVGFQNDVTARKRAELE 262
Query: 140 ---RNSGMSYSED---GGGSRLREIVFGSCRR-----EVC 168
R + + Y D G + ++V GS R EVC
Sbjct: 263 LERRTAELEYILDRVEGLIQDVTDVVAGSTTRSELEAEVC 302
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 58/92 (63%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ DP L D P+VY +DA+ +TGY +EVVG+NCRFL G D+ + ++ +I +
Sbjct: 152 ITISDPDLEDNPLVYVNDAYRDMTGYSFDEVVGRNCRFLQGEDSSEEAIAEMAAAIDEDY 211
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV + NYRKD + FWN + I+P+R+ G V
Sbjct: 212 PVTVELKNYRKDGTPFWNEVTIAPVRDDDGTV 243
>gi|254508393|ref|ZP_05120514.1| two-component hybrid sensor and regulator [Vibrio parahaemolyticus
16]
gi|219548706|gb|EED25710.1| two-component hybrid sensor and regulator [Vibrio parahaemolyticus
16]
Length = 1594
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 60/92 (65%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ D PD+P+++A+ AF TGY R EV+G+NCRFL D D + Q++++I +
Sbjct: 429 IVVSDATQPDLPIIFANKAFEMQTGYSRQEVLGKNCRFLQNDDRDQKGIDQLRDAIANQT 488
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+C+V I NYRKD + F+N L I P+ N G++
Sbjct: 489 SCSVVIRNYRKDGTLFYNNLKIDPVFNEQGEM 520
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 5/171 (2%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
++A+D ++D + PI+FA++ F +G+SR E++G+N R Q +++ I
Sbjct: 419 NKAIDSTTSGIVVSDATQPDLPIIFANKAFEMQTGYSRQEVLGKNCRFLQNDDRDQKGID 478
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140
++R+AI + V + NY+KDGT F+ K+ VF E G THF+ +Q + K
Sbjct: 479 QLRDAIANQTSCSVVIRNYRKDGTLFYNNLKIDPVFN-EQGEMTHFIGIQTDVTEMKRRE 537
Query: 141 NSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIE 191
+ E R E+ R D+ LD V+ DD G+ I+
Sbjct: 538 AENTTKLEQEIARRTEEVRESETRLRTVFDTALDGTVVI----DDKGIIID 584
>gi|359785711|ref|ZP_09288858.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Halomonas sp. GFAJ-1]
gi|359296944|gb|EHK61185.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Halomonas sp. GFAJ-1]
Length = 815
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 59/91 (64%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
+++D D+PMVY + AF ++TGY R V+G+NCRFL G DT Q+++ I ++
Sbjct: 265 IIVDALSDDLPMVYVNAAFERITGYSRQAVLGRNCRFLQGEDTAPESRRQLRKGINAQRE 324
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
V I NYR D + FWN L+ISP+R+ +G V
Sbjct: 325 VHVVIRNYRCDGTPFWNDLYISPVRDEAGVV 355
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 42 PIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKK 101
P+V+ + F +++G+SR ++GRN R QG T + ++R+ I +R + V + NY+
Sbjct: 275 PMVYVNAAFERITGYSRQAVLGRNCRFLQGEDTAPESRRQLRKGINAQREVHVVIRNYRC 334
Query: 102 DGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
DGTPFW +S V E G THF+ VQ I S++
Sbjct: 335 DGTPFWNDLYISPV-RDEAGVVTHFIGVQNDITSQR 369
>gi|428776862|ref|YP_007168649.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
[Halothece sp. PCC 7418]
gi|428691141|gb|AFZ44435.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Halothece sp. PCC 7418]
Length = 731
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 57/91 (62%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
++ D D P++Y ++AF +TGY NEV G NCRFL+G L +I++++Q +
Sbjct: 39 IITDAQQEDDPIIYVNEAFENMTGYAFNEVAGHNCRFLHGHHCQQEDLSKIRQALQEGKE 98
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
C + NYRKD S FWN L+I+P+ NA ++
Sbjct: 99 CCAVLKNYRKDGSEFWNELYIAPVHNAQNQI 129
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ + ITD PI++ + F M+G++ E+ G N R G + + +I
Sbjct: 30 AINASTNGIIITDAQQEDDPIIYVNEAFENMTGYAFNEVAGHNCRFLHGHHCQQEDLSKI 89
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
R+A++E + L NY+KDG+ FW ++ V ++ + TH + VQ + RK N
Sbjct: 90 RQALQEGKECCAVLKNYRKDGSEFWNELYIAPVHNAQN-QITHHIGVQTDVTHRKQAEN 147
>gi|340619808|ref|YP_004738261.1| two-component system-sensor histidine kinase [Zobellia
galactanivorans]
gi|339734605|emb|CAZ97982.1| Two-component system-Sensor histidine kinase [Zobellia
galactanivorans]
Length = 1092
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 66/111 (59%), Gaps = 4/111 (3%)
Query: 239 ISSSLYI---SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295
I + LY+ +L ++ D PD P++YA++AF K TGYD ++ +G+NCRFL
Sbjct: 376 IENILYVRNQALAATANGIIICDAREPDHPIIYANEAFCKTTGYDEDDFMGKNCRFLQRE 435
Query: 296 DTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
D D + + E+I+ + C V + NYRKD S FWN + I+PI N KVL
Sbjct: 436 DKDQFEIKLMSEAIRNGEDCRVVLRNYRKDGSLFWNEVSITPIYNEE-KVL 485
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
++AL + I D HPI++A+ F K +G+ + +G+N R Q ++ I
Sbjct: 384 NQALAATANGIIICDAREPDHPIIYANEAFCKTTGYDEDDFMGKNCRFLQREDKDQFEIK 443
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ EAIR V L NY+KDG+ FW ++ ++ E+ THFV V + + K
Sbjct: 444 LMSEAIRNGEDCRVVLRNYRKDGSLFWNEVSITPIYN-EEKVLTHFVGVHNDVTAHK 499
>gi|326389101|ref|ZP_08210683.1| LuxR family transcriptional regulator [Novosphingobium
nitrogenifigens DSM 19370]
gi|326206701|gb|EGD57536.1| LuxR family transcriptional regulator [Novosphingobium
nitrogenifigens DSM 19370]
Length = 196
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 60/93 (64%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
+ V+ +P LPD P+V + AF+ LTGY R+E++G+NCRFL G DT+ + +++ I
Sbjct: 13 AAVVSNPRLPDNPIVSCNQAFIDLTGYSRDEIIGRNCRFLCGPDTEVDLTERLRAGIAAR 72
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
V ILNY+KD + F N + I+PI A G++
Sbjct: 73 MPVMVEILNYKKDGTPFRNAVMIAPIFGADGEL 105
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ +++P + +PIV ++ F+ ++G+SR EIIGRN R GP T +R I
Sbjct: 13 AAVVSNPRLPDNPIVSCNQAFIDLTGYSRDEIIGRNCRFLCGPDTEVDLTERLRAGIAAR 72
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYS 147
P+ V +LNYKKDGTPF ++ +FG DG +F+ QV + H +N S S
Sbjct: 73 MPVMVEILNYKKDGTPFRNAVMIAPIFGA-DGELEYFLGSQVELSGGLHDQNRKRSES 129
>gi|119490653|ref|ZP_01623058.1| regulatory components of sensory transduction system [Lyngbya sp.
PCC 8106]
gi|119453818|gb|EAW34975.1| regulatory components of sensory transduction system [Lyngbya sp.
PCC 8106]
Length = 477
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 60/95 (63%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ D D P++Y + AF K+TGY +EV G+NCRFL G D D L I+ +++
Sbjct: 169 RNGVIITDATQSDNPIIYVNQAFEKITGYSVSEVWGKNCRFLQGEDRDQPNLDIIRNALK 228
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
++ C V I NYRKD + FWN + ISP+R+A G +
Sbjct: 229 NDEDCLVIIRNYRKDGTLFWNEVSISPVRDAGGNI 263
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 74/138 (53%), Gaps = 6/138 (4%)
Query: 8 IEQSFNNRYTLWV-----HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEII 62
++Q N R L + ++A+ + ITD + S +PI++ ++ F K++G+S +E+
Sbjct: 144 LQQEINTRKELEIQLNLFNQAIFTCRNGVIITDATQSDNPIIYVNQAFEKITGYSVSEVW 203
Query: 63 GRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGR 122
G+N R QG ++ + IR A++ + V + NY+KDGT FW +S V G
Sbjct: 204 GKNCRFLQGEDRDQPNLDIIRNALKNDEDCLVIIRNYRKDGTLFWNEVSISPV-RDAGGN 262
Query: 123 ATHFVAVQVPIVSRKHMR 140
TH++ +Q I R M+
Sbjct: 263 ITHYIGIQSDITERHRMQ 280
>gi|448407789|ref|ZP_21573984.1| pas domain s-box [Halosimplex carlsbadense 2-9-1]
gi|445675039|gb|ELZ27574.1| pas domain s-box [Halosimplex carlsbadense 2-9-1]
Length = 648
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 56/90 (62%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315
L+D P+ P+VY ++ F ++TGYD E++G+NCRFL G TD + ++ I+ +
Sbjct: 312 LVDGTDPERPLVYVNEGFGRVTGYDPEELLGRNCRFLQGEATDPETVATLRAGIEAHEPV 371
Query: 316 TVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ I+NYR D S FWN + + PI N +G V
Sbjct: 372 STEIVNYRADGSPFWNRVQLYPIENDAGTV 401
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 19/178 (10%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE ++ D + P+V+ + GF +++G+ E++GRN R QG T+ T+ +
Sbjct: 302 AMDEAEIGISLVDGTDPERPLVYVNEGFGRVTGYDPEELLGRNCRFLQGEATDPETVATL 361
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R I P+ ++NY+ DG+PFW ++ + + G THF+ Q + RK
Sbjct: 362 RAGIEAHEPVSTEIVNYRADGSPFWNRVQLYPIE-NDAGTVTHFLGFQDDVTERKR---- 416
Query: 143 GMSYSEDGGGSRLREIVFGSCRREVCSD-----SLLDLDRVLALDSDDTGLEIEDSCE 195
RLR ++ R + +D + ++ R D D G IEDS E
Sbjct: 417 ---------AERLRALLNRVLRHNLGNDITPFMAFGEMLRTGEHDVADLGARIEDSAE 465
>gi|402771419|ref|YP_006590956.1| AraC family transcriptional regulator [Methylocystis sp. SC2]
gi|401773439|emb|CCJ06305.1| Transcriptional regulator with PAS/PAC sensors, AraC family
[Methylocystis sp. SC2]
Length = 488
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 63/92 (68%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
L DP L D P++YA+ F+++TGY+ +E++G+NCRFL G D D +++E+++ +
Sbjct: 366 TLADPDLEDSPIIYANRPFMRITGYELDEIIGRNCRFLQGEDRDQEGRLRLREALRNREQ 425
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
V + NYRKD + F N L+I+P+ +A G++L
Sbjct: 426 IEVTLRNYRKDGALFHNKLNITPLFDADGRLL 457
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 63/110 (57%), Gaps = 1/110 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
D + T+ DP + PI++A+R F++++G+ EIIGRN R QG ++ + +R
Sbjct: 358 FDACVNGVTLADPDLEDSPIIYANRPFMRITGYELDEIIGRNCRFLQGEDRDQEGRLRLR 417
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
EA+R IEV L NY+KDG F ++ +F DGR +F+ VQ +
Sbjct: 418 EALRNREQIEVTLRNYRKDGALFHNKLNITPLF-DADGRLLYFLGVQYDV 466
>gi|56750209|ref|YP_170910.1| two-component response regulator [Synechococcus elongatus PCC 6301]
gi|81300164|ref|YP_400372.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Synechococcus elongatus PCC 7942]
gi|56685168|dbj|BAD78390.1| two-component response regulator [Synechococcus elongatus PCC 6301]
gi|81169045|gb|ABB57385.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Synechococcus elongatus PCC 7942]
Length = 929
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 4/125 (3%)
Query: 221 LTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYD 280
L+ R + ++ S + + SL S + V++D PDMP++Y + AF ++TGY
Sbjct: 354 LSLRDIAERKASEQQLRLLKESLEASFNGV----VIVDAIEPDMPVIYVNPAFERITGYS 409
Query: 281 RNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRN 340
E++G+NCR L G + D+ + +I + + V I N+RKD FWN L+ISPI N
Sbjct: 410 EAEMLGRNCRILQGNERDSLQIEEIHRGLSQAENVHVVIRNFRKDGQPFWNDLYISPIFN 469
Query: 341 ASGKV 345
A G V
Sbjct: 470 AQGNV 474
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 8/153 (5%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ E+L+ + I D P+++ + F +++G+S AE++GRN R+ QG + I
Sbjct: 372 LKESLEASFNGVVIVDAIEPDMPVIYVNPAFERITGYSEAEMLGRNCRILQGNERDSLQI 431
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
EI + + + V + N++KDG PFW +S +F + G THF+ VQ I +K
Sbjct: 432 EEIHRGLSQAENVHVVIRNFRKDGQPFWNDLYISPIFNAQ-GNVTHFIGVQNDITEQKR- 489
Query: 140 RNSGMSYSEDGGGSRLREIVFGSCRREVCSDSL 172
Y E+ S +++ G R V D L
Sbjct: 490 ------YEEELSFSASHDVLTGLPNRAVLEDRL 516
>gi|170077969|ref|YP_001734607.1| sensory box/GGDEF family protein [Synechococcus sp. PCC 7002]
gi|169885638|gb|ACA99351.1| sensory box/GGDEF family protein [Synechococcus sp. PCC 7002]
Length = 780
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 61/101 (60%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L+ S+ I+Q V+ D + P++Y + F K+TGY +E++G+NC FL G D L
Sbjct: 362 LHRSINVIRQGVVITDAREENNPIIYVNQGFEKITGYTADEILGRNCNFLQGRDRRQPPL 421
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+++ +I Q C V + NYRK+ FWN LHI P+R+ +G
Sbjct: 422 TELRAAILKGQECNVTLRNYRKNGEPFWNALHIFPVRDPAG 462
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+H +++ + ITD +PI++ ++GF K++G++ EI+GRN QG + +
Sbjct: 362 LHRSINVIRQGVVITDAREENNPIIYVNQGFEKITGYTADEILGRNCNFLQGRDRRQPPL 421
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED--GRATHFVAVQVPIVSRK 137
E+R AI + + V L NY+K+G PFW +F D G THF+ +Q I K
Sbjct: 422 TELRAAILKGQECNVTLRNYRKNGEPFWNALH---IFPVRDPAGYLTHFIGIQTDISHEK 478
>gi|427732263|ref|YP_007078500.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Nostoc sp. PCC 7524]
gi|427368182|gb|AFY50903.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Nostoc sp. PCC 7524]
Length = 1019
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 63/100 (63%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L VL D PD P++Y + AF +TGY EV+G+NCRFL G D + ++
Sbjct: 207 ALAASSNGIVLTDATQPDNPIIYVNPAFESITGYFVQEVIGRNCRFLQGNAQDQLGIEEL 266
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
++++Q ++ C V + NYRKD + FWN L+I+P+ + SG++
Sbjct: 267 RKALQEQRECHVILKNYRKDGTPFWNELYIAPVFDDSGRL 306
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL + +TD + +PI++ + F ++G+ E+IGRN R QG ++ I E+
Sbjct: 207 ALAASSNGIVLTDATQPDNPIIYVNPAFESITGYFVQEVIGRNCRFLQGNAQDQLGIEEL 266
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
R+A++E+R V L NY+KDGTPFW ++ VF + GR T+F+ VQ
Sbjct: 267 RKALQEQRECHVILKNYRKDGTPFWNELYIAPVF-DDSGRLTNFIGVQ 313
>gi|347976015|ref|XP_003437337.1| unnamed protein product [Podospora anserina S mat+]
gi|170940195|emb|CAP65422.1| unnamed protein product [Podospora anserina S mat+]
Length = 723
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
+F L P PD P++ ASDA L+++GY R E++ +NCRF G+ TD ++ E+I T
Sbjct: 288 AFCLTTPLEPDNPIICASDALLRMSGYGRKEIMNKNCRFFQGICTDPEATRRLSEAISTG 347
Query: 313 QACTVRILNYRKDKSSFWNLLHISPI 338
+ ++NYRKD + FWNLL + P+
Sbjct: 348 HEASELLINYRKDGTPFWNLLFVCPL 373
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 19 WVHEALDELP---DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTN 75
W L P D+F +T P +PI+ AS L+MSG+ R EI+ +N R FQG T+
Sbjct: 274 WAGGFLSTCPGLGDAFCLTTPLEPDNPIICASDALLRMSGYGRKEIMNKNCRFFQGICTD 333
Query: 76 RRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+ EAI L+NY+KDGTPFW L + +F E G +F+ Q+
Sbjct: 334 PEATRRLSEAISTGHEASELLINYRKDGTPFWNLLFVCPLF--EGGTIRYFLGAQI 387
>gi|443476320|ref|ZP_21066232.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC
7429]
gi|443018713|gb|ELS32917.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC
7429]
Length = 1179
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 60/95 (63%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ V+ D LP+ P+VY + AF K++GY E++G+NCRFL G D ++ +++
Sbjct: 293 QNGIVITDVRLPNNPIVYVNSAFEKISGYTAGEIMGKNCRFLQGSDLFQQEKEILRNAVK 352
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+AC V I NYRKD S FWN L+ISPI + GKV
Sbjct: 353 QGKACRVVIRNYRKDGSLFWNELNISPIFDNMGKV 387
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+ ITD + +PIV+ + F K+SG++ EI+G+N R QG ++ +R A+++
Sbjct: 294 NGIVITDVRLPNNPIVYVNSAFEKISGYTAGEIMGKNCRFLQGSDLFQQEKEILRNAVKQ 353
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ V + NY+KDG+ FW +S +F G+ THF+ +Q I RK
Sbjct: 354 GKACRVVIRNYRKDGSLFWNELNISPIFDNM-GKVTHFIGIQSDITDRK 401
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322
D + YA+ F +++GY E++GQN R +N + +I + I N
Sbjct: 180 DGEITYANGKFCEISGYSEIELLGQNHRLINSDYHSPEFFADLWHTITNGKVWRGEICNR 239
Query: 323 RKDKSSFWNLLHISPIRNASG 343
KD + +W I P+ N G
Sbjct: 240 AKDGTYYWTDSTIVPLLNERG 260
Score = 38.1 bits (87), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 43 IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKD 102
I +A+ F ++SG+S E++G+N R+ + ++ I + + N KD
Sbjct: 183 ITYANGKFCEISGYSEIELLGQNHRLINSDYHSPEFFADLWHTITNGKVWRGEICNRAKD 242
Query: 103 GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
GT +W + + E G ++A++ I RK +
Sbjct: 243 GTYYWTDSTIVPLLN-ERGLPMQYLAIRFDISDRKRFEET 281
>gi|332672276|ref|YP_004455284.1| putative PAS/PAC sensor protein [Cellulomonas fimi ATCC 484]
gi|332341314|gb|AEE47897.1| putative PAS/PAC sensor protein [Cellulomonas fimi ATCC 484]
Length = 594
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 60/91 (65%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315
+ DP PD P+V+ + AF +LTG+ +EVVG+NCRFL G TD + ++ ++ +
Sbjct: 64 VTDPTQPDDPIVWVNTAFERLTGHRASEVVGRNCRFLQGTGTDLAAIGALRTALDEGRPA 123
Query: 316 TVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
T ++LNYR+D + FWN L ++ +R+ +G V+
Sbjct: 124 TAQVLNYRRDGTPFWNRLVVAQVRDGAGGVV 154
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDP+ PIV+ + F +++G +E++GRN R QG T+ I +R A+ E RP
Sbjct: 64 VTDPTQPDDPIVWVNTAFERLTGHRASEVVGRNCRFLQGTGTDLAAIGALRTALDEGRPA 123
Query: 93 EVNLLNYKKDGTPFW 107
+LNY++DGTPFW
Sbjct: 124 TAQVLNYRRDGTPFW 138
>gi|448620193|ref|ZP_21667541.1| HTR-like protein [Haloferax denitrificans ATCC 35960]
gi|445756981|gb|EMA08337.1| HTR-like protein [Haloferax denitrificans ATCC 35960]
Length = 390
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 56/99 (56%)
Query: 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIK 306
L + IDP LPD P+VY ++AF LTGYD V G+NCRFL G +TD + +I+
Sbjct: 271 LDAVDVGIAAIDPSLPDDPVVYLNEAFETLTGYDAESVTGRNCRFLYGPETDPEAVAEIR 330
Query: 307 ESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+++ + + I Y D F N L I PIR+A G V
Sbjct: 331 SAVEAGEPISAEIRTYDADGEPFRNRLDIRPIRDADGAV 369
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
LD + DPS+ P+V+ + F ++G+ + GRN R GP T+ + EIR
Sbjct: 271 LDAVDVGIAAIDPSLPDDPVVYLNEAFETLTGYDAESVTGRNCRFLYGPETDPEAVAEIR 330
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132
A+ PI + Y DG PF + + DG FV P
Sbjct: 331 SAVEAGEPISAEIRTYDADGEPFRNRLDIRPIR-DADGAVEFFVGFHRP 378
>gi|448301844|ref|ZP_21491834.1| HTR-like protein [Natronorubrum tibetense GA33]
gi|445583468|gb|ELY37799.1| HTR-like protein [Natronorubrum tibetense GA33]
Length = 563
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 60/92 (65%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+L +PH D P++Y +D F LTGY+++EV+G+NCRFL G T + +++ +++ +
Sbjct: 114 IILTNPHAEDNPIIYVNDKFTDLTGYEKDEVLGRNCRFLQGEQTREEPVDKLRTAVENRE 173
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV + NYR D + FWN + I+P+ + +G +
Sbjct: 174 PVTVELRNYRADGTKFWNHVRIAPLFDDNGDI 205
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P +T+P +PI++ + F ++G+ + E++GRN R QG +T + ++
Sbjct: 106 AMNEAPVGIILTNPHAEDNPIIYVNDKFTDLTGYEKDEVLGRNCRFLQGEQTREEPVDKL 165
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R A+ P+ V L NY+ DGT FW +++ +F ++G +FV Q + +K
Sbjct: 166 RTAVENREPVTVELRNYRADGTKFWNHVRIAPLF-DDNGDIEYFVGFQNDVTKKK 219
>gi|158334589|ref|YP_001515761.1| PAS sensor diguanylate cyclase/phophodiesterase [Acaryochloris
marina MBIC11017]
gi|158304830|gb|ABW26447.1| PAS sensor diguanylate cyclase/phophodiesterase, putative
[Acaryochloris marina MBIC11017]
Length = 935
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 58/91 (63%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
V+ D +P P+++AS +F + TGY +EV+G +C FL G TD + +I+++++ +Q
Sbjct: 154 VISDATVPGFPVIFASPSFYQFTGYTPDEVIGNSCHFLQGPKTDPNTVDEIRQALKNDQT 213
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
ILNYRK FWNLL I P+ NA G+V
Sbjct: 214 FEGEILNYRKMGQPFWNLLRIKPLTNAQGEV 244
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 64/109 (58%), Gaps = 1/109 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
D I+D ++ G P++FAS F + +G++ E+IG + QGP+T+ T+ EIR+A++
Sbjct: 151 DGIVISDATVPGFPVIFASPSFYQFTGYTPDEVIGNSCHFLQGPKTDPNTVDEIRQALKN 210
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
++ E +LNY+K G PFW L ++ + + G V +Q I +K
Sbjct: 211 DQTFEGEILNYRKMGQPFWNLLRIKPLTNAQ-GEVHFLVGIQTDITQQK 258
>gi|90420751|ref|ZP_01228657.1| putative sensor histidine kinase/response regulator, possible
photoreceptor [Aurantimonas manganoxydans SI85-9A1]
gi|90335042|gb|EAS48803.1| putative sensor histidine kinase/response regulator, possible
photoreceptor [Aurantimonas manganoxydans SI85-9A1]
Length = 415
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 63/93 (67%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L ++ + VL +P+L D P+VYA+ AF K+T Y + V+G+NCRFL G DTD + Q+
Sbjct: 22 ALAKMPLALVLTNPNLDDNPIVYANRAFEKITRYSADAVIGRNCRFLQGDDTDPAQVRQL 81
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
++++ E+ +V I+NYR D + F N L I+P+
Sbjct: 82 AQAVREERDFSVDIVNYRSDGTRFLNRLMITPL 114
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 63/97 (64%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL ++P + +T+P++ +PIV+A+R F K++ +S +IGRN R QG T+ + ++
Sbjct: 22 ALAKMPLALVLTNPNLDDNPIVYANRAFEKITRYSADAVIGRNCRFLQGDDTDPAQVRQL 81
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKE 119
+A+REER V+++NY+ DGT F ++ ++ +E
Sbjct: 82 AQAVREERDFSVDIVNYRSDGTRFLNRLMITPLYDEE 118
>gi|397569305|gb|EJK46660.1| hypothetical protein THAOC_34663 [Thalassiosira oceanica]
Length = 211
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 62/96 (64%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
S G SF + D PD P+++ASD F KLTGY E+ G+NCRFL G +T + +I
Sbjct: 80 SAGHEDVSFCVCDHEKPDCPIIFASDGFCKLTGYGHTEIEGRNCRFLQGSETRKEDVDRI 139
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNA 341
+ +I+++ +V +LNY+KD ++F N ++P+R+A
Sbjct: 140 RSAIKSQTEASVNLLNYKKDGTAFNNQFFLAPLRDA 175
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SF + D PI+FAS GF K++G+ EI GRN R QG T + + IR AI+ +
Sbjct: 87 SFCVCDHEKPDCPIIFASDGFCKLTGYGHTEIEGRNCRFLQGSETRKEDVDRIRSAIKSQ 146
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
VNLLNYKKDGT F F ++ + D R +++ VQ +
Sbjct: 147 TEASVNLLNYKKDGTAFNNQFFLAPL-RDADERTAYYIGVQCSV 189
>gi|82702910|ref|YP_412476.1| putative PAS/PAC sensor protein [Nitrosospira multiformis ATCC
25196]
gi|82410975|gb|ABB75084.1| putative PAS/PAC sensor protein [Nitrosospira multiformis ATCC
25196]
Length = 152
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 62/110 (56%)
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G I L L L DP + D+P+VYA+ AF +TGY + E +G+NCRFL G D
Sbjct: 10 GLIPRVLCTILDSCVNGVTLADPDMEDLPLVYANKAFADMTGYTQEETIGKNCRFLQGTD 69
Query: 297 TDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ QI+ +I ++ V + NYRK+ F+N L I P+ ++ GKVL
Sbjct: 70 REQEERSQIRTAITNKEPIEVTLRNYRKNGELFYNHLKIIPLFDSQGKVL 119
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
LD + T+ DP + P+V+A++ F M+G+++ E IG+N R QG + +IR
Sbjct: 20 LDSCVNGVTLADPDMEDLPLVYANKAFADMTGYTQEETIGKNCRFLQGTDREQEERSQIR 79
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
AI + PIEV L NY+K+G F+ K+ +F + G+ +++ VQ I ++
Sbjct: 80 TAITNKEPIEVTLRNYRKNGELFYNHLKIIPLFDSQ-GKVLYYLGVQYDITTQ 131
>gi|448659232|ref|ZP_21683200.1| HTR-like protein [Haloarcula californiae ATCC 33799]
gi|445760734|gb|EMA11991.1| HTR-like protein [Haloarcula californiae ATCC 33799]
Length = 748
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 6/162 (3%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P +T P PI +A+R FL+++G++ +E+ GRN R QG T + +
Sbjct: 260 AMNEAPIGIILTGPKQDDTPITYANRRFLELTGYTESEVRGRNCRFLQGEATESEPVDAM 319
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R AI E P+ V L NY+KDGT FW ++ V +DG ++V Q I RK
Sbjct: 320 RAAIDEGEPVSVELRNYRKDGTMFWNQVSIAPVR-DDDGTVVNYVGFQRDITERKEHERR 378
Query: 143 GMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSD 184
+ SE +++++ R EV + VL L+++
Sbjct: 379 LKALSE-----SVQDLLQADTREEVAEIGVETARTVLGLEAN 415
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 58/93 (62%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+L P D P+ YA+ FL+LTGY +EV G+NCRFL G T++ + ++ +I +
Sbjct: 268 IILTGPKQDDTPITYANRRFLELTGYTESEVRGRNCRFLQGEATESEPVDAMRAAIDEGE 327
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+V + NYRKD + FWN + I+P+R+ G V+
Sbjct: 328 PVSVELRNYRKDGTMFWNQVSIAPVRDDDGTVV 360
>gi|323489144|ref|ZP_08094376.1| blue light GTP-binding receptor [Planococcus donghaensis MPA1U2]
gi|323397031|gb|EGA89845.1| blue light GTP-binding receptor [Planococcus donghaensis MPA1U2]
Length = 282
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 54/85 (63%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
++ DP PD P++Y + F+ +TGY + E++G+NCRFL G T + +++ +I E+
Sbjct: 41 IVTDPSQPDNPIIYTNQTFIDMTGYSQEEIIGRNCRFLQGAGTAKEDIEKMRTAIAAEEK 100
Query: 315 CTVRILNYRKDKSSFWNLLHISPIR 339
V I NYRKD S FWN L I P+R
Sbjct: 101 VIVTIQNYRKDGSPFWNRLVIDPVR 125
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 51/75 (68%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDPS +PI++ ++ F+ M+G+S+ EIIGRN R QG T + I ++R AI E +
Sbjct: 42 VTDPSQPDNPIIYTNQTFIDMTGYSQEEIIGRNCRFLQGAGTAKEDIEKMRTAIAAEEKV 101
Query: 93 EVNLLNYKKDGTPFW 107
V + NY+KDG+PFW
Sbjct: 102 IVTIQNYRKDGSPFW 116
>gi|448573345|ref|ZP_21640929.1| bacterio-opsin activator [Haloferax lucentense DSM 14919]
gi|445719110|gb|ELZ70793.1| bacterio-opsin activator [Haloferax lucentense DSM 14919]
Length = 658
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+DE P T+ D S+ P+V+ + F M+G+S +GRN R QGP T+ +
Sbjct: 136 EQAIDEAPVGITVADCSLPDRPLVYVNEAFETMTGYSADAALGRNCRYLQGPNTDPERVA 195
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+R AI E V LLNY+ +G FW ++ + G DG TH+V Q I R
Sbjct: 196 ALRRAIEAEESASVELLNYRANGETFWNRVDVAPLSGP-DGEVTHYVGFQTDITER 250
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 59/92 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ D LPD P+VY ++AF +TGY + +G+NCR+L G +TD + ++ +I+ E+
Sbjct: 146 ITVADCSLPDRPLVYVNEAFETMTGYSADAALGRNCRYLQGPNTDPERVAALRRAIEAEE 205
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +V +LNYR + +FWN + ++P+ G+V
Sbjct: 206 SASVELLNYRANGETFWNRVDVAPLSGPDGEV 237
>gi|87199253|ref|YP_496510.1| LuxR family transcriptional regulator [Novosphingobium
aromaticivorans DSM 12444]
gi|87134934|gb|ABD25676.1| transcriptional regulator, LuxR family [Novosphingobium
aromaticivorans DSM 12444]
Length = 223
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 62/93 (66%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
+ V+ +P LPD P++ +DAF++LTGY R E++G+NCRFL G T+ +++ I +
Sbjct: 40 AAVISNPRLPDNPIIACNDAFVELTGYAREEIIGRNCRFLRGSGTEDDKARILRDGIWRK 99
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
Q V I+NY+KD + F N + ++PI +A G+V
Sbjct: 100 QPVMVEIVNYKKDGTRFRNAVMVAPIFDADGEV 132
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 68/124 (54%), Gaps = 1/124 (0%)
Query: 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRR 77
+ + E + P + I++P + +PI+ + F++++G++R EIIGRN R +G T
Sbjct: 28 MSIAEMIASSPTAAVISNPRLPDNPIIACNDAFVELTGYAREEIIGRNCRFLRGSGTEDD 87
Query: 78 TIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+R+ I ++P+ V ++NYKKDGT F ++ +F DG +F+ QV I +
Sbjct: 88 KARILRDGIWRKQPVMVEIVNYKKDGTRFRNAVMVAPIF-DADGEVEYFLGSQVEIAEDQ 146
Query: 138 HMRN 141
N
Sbjct: 147 GQAN 150
>gi|448597599|ref|ZP_21654524.1| bacterio-opsin activator [Haloferax alexandrinus JCM 10717]
gi|445739060|gb|ELZ90569.1| bacterio-opsin activator [Haloferax alexandrinus JCM 10717]
Length = 658
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+DE P T+ D S+ P+V+ + F M+G+S +GRN R QGP T+ +
Sbjct: 136 EQAIDEAPVGITVADCSLPDRPLVYVNEAFETMTGYSADAALGRNCRYLQGPNTDPERVA 195
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+R AI E V LLNY+ +G FW ++ + G DG TH+V Q I R
Sbjct: 196 ALRRAIEAEESASVELLNYRANGETFWNRVDVAPLSGP-DGEVTHYVGFQTDITER 250
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 59/92 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ D LPD P+VY ++AF +TGY + +G+NCR+L G +TD + ++ +I+ E+
Sbjct: 146 ITVADCSLPDRPLVYVNEAFETMTGYSADAALGRNCRYLQGPNTDPERVAALRRAIEAEE 205
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +V +LNYR + +FWN + ++P+ G+V
Sbjct: 206 SASVELLNYRANGETFWNRVDVAPLSGPDGEV 237
>gi|433431088|ref|ZP_20407593.1| bacterio-opsin activator, partial [Haloferax sp. BAB2207]
gi|432194173|gb|ELK50824.1| bacterio-opsin activator, partial [Haloferax sp. BAB2207]
Length = 575
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+DE P T+ D S+ P+V+ + F M+G+S +GRN R QGP T+ +
Sbjct: 53 EQAIDEAPVGITVADCSLPDRPLVYVNEAFETMTGYSADAALGRNCRYLQGPNTDPERVA 112
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+R AI E V LLNY+ +G FW ++ + G DG TH+V Q I R
Sbjct: 113 ALRRAIEAEESASVELLNYRANGETFWNRVDVAPLSGP-DGEVTHYVGFQTDITER 167
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 59/92 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ D LPD P+VY ++AF +TGY + +G+NCR+L G +TD + ++ +I+ E+
Sbjct: 63 ITVADCSLPDRPLVYVNEAFETMTGYSADAALGRNCRYLQGPNTDPERVAALRRAIEAEE 122
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +V +LNYR + +FWN + ++P+ G+V
Sbjct: 123 SASVELLNYRANGETFWNRVDVAPLSGPDGEV 154
>gi|402072518|gb|EJT68290.1| hypothetical protein GGTG_14129 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 1036
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 63/104 (60%), Gaps = 3/104 (2%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
S Y LG F L DP P P+++AS+ F+ +TGY R +++ +NCRFL G TD
Sbjct: 666 SRYQGLG---DCFCLTDPGKPQNPILWASEGFVAVTGYTRTDIIPRNCRFLQGAQTDPEA 722
Query: 302 LYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ ++ +I + +LNY+K+K FWNLL+ +P+ + +G++
Sbjct: 723 IKRLSMAIHERKETVELLLNYKKNKEPFWNLLYCAPLYDEAGEL 766
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L D F +TDP +PI++AS GF+ ++G++R +II RN R QG +T+ I + AI
Sbjct: 671 LGDCFCLTDPGKPQNPILWASEGFVAVTGYTRTDIIPRNCRFLQGAQTDPEAIKRLSMAI 730
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
E + LLNYKK+ PFW L + ++ E G F+ QV
Sbjct: 731 HERKETVELLLNYKKNKEPFWNLLYCAPLY-DEAGELAFFIGGQV 774
>gi|390949606|ref|YP_006413365.1| PAS domain-containing protein [Thiocystis violascens DSM 198]
gi|390426175|gb|AFL73240.1| PAS domain S-box [Thiocystis violascens DSM 198]
Length = 515
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 60/96 (62%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
I + D PD+P+VYA+ AFL +TGY E++G+NCRFL DT + I+ ++
Sbjct: 24 INSGVSVADAREPDLPLVYANPAFLAMTGYTAAEILGRNCRFLQAHDTRQPEIETIRAAL 83
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ + +V + NYRKD S FWN L ++P+R+ G++
Sbjct: 84 REGRETSVLLRNYRKDGSLFWNQLTLAPVRDQCGQI 119
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 71/132 (53%), Gaps = 1/132 (0%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
E++ ++ W ++ + ++ D P+V+A+ FL M+G++ AEI+GRN R
Sbjct: 6 EKADDSELLRWKMRVMEAINSGVSVADAREPDLPLVYANPAFLAMTGYTAAEILGRNCRF 65
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
Q T + I IR A+RE R V L NY+KDG+ FW ++ V + G+ TH+V
Sbjct: 66 LQAHDTRQPEIETIRAALREGRETSVLLRNYRKDGSLFWNQLTLAPVR-DQCGQITHYVG 124
Query: 129 VQVPIVSRKHMR 140
+Q + + K +
Sbjct: 125 IQQDMTALKEAQ 136
>gi|53804038|ref|YP_114126.1| sensory box protein [Methylococcus capsulatus str. Bath]
gi|53757799|gb|AAU92090.1| sensory box protein [Methylococcus capsulatus str. Bath]
Length = 853
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 86/369 (23%), Positives = 162/369 (43%), Gaps = 60/369 (16%)
Query: 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRR 77
L + A+D+ P I D S I + +RG+ ++G+ E++G R R +R
Sbjct: 238 LMLSSAVDQSPSGVLIAD---SQGCIQYVNRGYTTLTGYGAEELVGT--RCSGAGRADR- 291
Query: 78 TIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ +RE IR + + +++G +W L ++ + G ATH++ +Q I +K
Sbjct: 292 -LGRLREVIRSGTAWRGEVQDRRRNGEVYWALESITPILDGH-GEATHYLLIQQDITEQK 349
Query: 138 HMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLD-------------RVLALDSD 184
+ + ++ SE+ R R++ E+ + L + D +L + +
Sbjct: 350 RDKEA-LAESEE----RFRQVA------EMAGEWLWEQDPEGRYLYSSAAVRAILGFEPE 398
Query: 185 DTG-------LEIEDSCE-ASDLEKRKAA-TAIDNILSVLTH------YSQLTGRLVCGK 229
+ L ED S L KA+ +++ H Y++ TG + G+
Sbjct: 399 EVRGKHYFDLLTPEDRQHWMSALPPAKASEKPFFRLINRYRHKDGHEVYTESTGAPIFGE 458
Query: 230 RCSLPGMGFISSSL-----YISLGRIKQSFV--------LIDPHLPDMPMVYASDAFLKL 276
R L + + Y R++ + + D +P VY + A +
Sbjct: 459 RGELVKWRGVDHDITTRKRYEDELRVRNRAIESASVGINIADAQTKGLPNVYINPALSAI 518
Query: 277 TGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHIS 336
TGY + E++ + R L G TD + +I+E+I+ ++C + I NYRKD + FWN L IS
Sbjct: 519 TGYSKEELLHHSMRMLQGAGTDPASVEEIREAIRAGRSCRLTIRNYRKDGTPFWNELLIS 578
Query: 337 PIRNASGKV 345
P+++ +G +
Sbjct: 579 PVKDEAGVI 587
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 1/112 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ I D G P V+ + ++G+S+ E++ + RM QG T+ ++ EI
Sbjct: 488 AIESASVGINIADAQTKGLPNVYINPALSAITGYSKEELLHHSMRMLQGAGTDPASVEEI 547
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
REAIR R + + NY+KDGTPFW +S V E G TH++ +Q +
Sbjct: 548 REAIRAGRSCRLTIRNYRKDGTPFWNELLISPV-KDEAGVITHYIGIQTDVT 598
>gi|289581708|ref|YP_003480174.1| multi-sensor signal transduction histidine kinase [Natrialba
magadii ATCC 43099]
gi|448282885|ref|ZP_21474167.1| multi-sensor signal transduction histidine kinase [Natrialba
magadii ATCC 43099]
gi|289531261|gb|ADD05612.1| multi-sensor signal transduction histidine kinase [Natrialba
magadii ATCC 43099]
gi|445575500|gb|ELY29975.1| multi-sensor signal transduction histidine kinase [Natrialba
magadii ATCC 43099]
Length = 477
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P +TD S+ +PIV+A+ F +++G+ AE++GRN R QG RT + + +
Sbjct: 143 AMDEAPVGIVLTDSSLPDNPIVYANEKFYELTGYPEAEVLGRNCRFLQGERTKQEPVDRM 202
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R AI PI + NY++DGT FW ++ V E +FV Q I RK
Sbjct: 203 RAAIEAREPITTEVRNYRRDGTMFWNEVTIAPVDNSE---TPYFVGFQHEITRRK 254
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 57/88 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
VL D LPD P+VYA++ F +LTGY EV+G+NCRFL G T + +++ +I+ +
Sbjct: 151 IVLTDSSLPDNPIVYANEKFYELTGYPEAEVLGRNCRFLQGERTKQEPVDRMRAAIEARE 210
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNA 341
T + NYR+D + FWN + I+P+ N+
Sbjct: 211 PITTEVRNYRRDGTMFWNEVTIAPVDNS 238
>gi|378734080|gb|EHY60539.1| non-specific serine/threonine protein kinase [Exophiala
dermatitidis NIH/UT8656]
Length = 603
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLY 303
Y LG FVL DP D P+VYASD F+K+TGY R E++ +NCRFL TD + +
Sbjct: 283 YAGLG---DCFVLTDPTKADNPIVYASDGFVKVTGYSRTEIIPRNCRFLQCRHTDKSAVG 339
Query: 304 QIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+++E+I Q +LN +K FWNLL+ +P+ + G ++
Sbjct: 340 RLREAIVLRQESVELLLNQKKSGEPFWNLLYTTPLFDDRGNLV 382
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 67/107 (62%), Gaps = 5/107 (4%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L D F +TDP+ + +PIV+AS GF+K++G+SR EII RN R Q T++ + +REAI
Sbjct: 286 LGDCFVLTDPTKADNPIVYASDGFVKVTGYSRTEIIPRNCRFLQCRHTDKSAVGRLREAI 345
Query: 87 --REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R+E +E+ LLN KK G PFW L + +F + G F+ QV
Sbjct: 346 VLRQES-VEL-LLNQKKSGEPFWNLLYTTPLF-DDRGNLVFFLGGQV 389
>gi|344338687|ref|ZP_08769618.1| PAS sensor protein [Thiocapsa marina 5811]
gi|343801269|gb|EGV19212.1| PAS sensor protein [Thiocapsa marina 5811]
Length = 153
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 58/91 (63%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315
L DP D P+VYA++AF +TGY R E+VG NCR L G D D L +++E+I+ +
Sbjct: 29 LSDPDQEDNPIVYANEAFELITGYSREEIVGHNCRILQGQDRDQEGLEKVREAIRERKRT 88
Query: 316 TVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
TV + NYRKD + F+N I P+ + GK++
Sbjct: 89 TVTLRNYRKDGTLFYNRFSIRPLYDRQGKLI 119
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 73/123 (59%), Gaps = 1/123 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ + LD + T++DP +PIV+A+ F ++G+SR EI+G N R+ QG ++ +
Sbjct: 16 LSQILDTSINGITLSDPDQEDNPIVYANEAFELITGYSREEIVGHNCRILQGQDRDQEGL 75
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
++REAIRE + V L NY+KDGT F+ F + ++ ++ G+ +F+ VQ + + +
Sbjct: 76 EKVREAIRERKRTTVTLRNYRKDGTLFYNRFSIRPLYDRQ-GKLIYFLGVQYDVTEQVYA 134
Query: 140 RNS 142
R
Sbjct: 135 REE 137
>gi|347540960|ref|YP_004848386.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS sensor(s)
[Pseudogulbenkiania sp. NH8B]
gi|345644139|dbj|BAK77972.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS sensor(s)
[Pseudogulbenkiania sp. NH8B]
Length = 1072
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 58/93 (62%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
+ ++ D PD P++Y + AF ++TGY R V+G+NCRFL G DT L I+ +++
Sbjct: 508 AVLITDNRRPDNPIIYVNPAFERITGYARAAVIGRNCRFLQGRDTAQPELTAIRRALENR 567
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ NYRKD S FWN L ++P+R++ G+V
Sbjct: 568 HEGKALLRNYRKDGSMFWNELRVAPVRDSQGEV 600
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
A++ ++ ITD +PI++ + F +++G++RA +IGRN R QG T + +
Sbjct: 499 QRAIEASVNAVLITDNRRPDNPIIYVNPAFERITGYARAAVIGRNCRFLQGRDTAQPELT 558
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAV 129
IR A+ + L NY+KDG+ FW +++ V + G +H++ V
Sbjct: 559 AIRRALENRHEGKALLRNYRKDGSMFWNELRVAPVRDSQ-GEVSHYIGV 606
>gi|224826409|ref|ZP_03699511.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Pseudogulbenkiania ferrooxidans 2002]
gi|224601510|gb|EEG07691.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Pseudogulbenkiania ferrooxidans 2002]
Length = 1072
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 58/93 (62%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
+ ++ D PD P++Y + AF ++TGY R V+G+NCRFL G DT L I+ +++
Sbjct: 508 AVLITDNRRPDNPIIYVNPAFERITGYARATVIGRNCRFLQGRDTAQPELTAIRRALENR 567
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ NYRKD S FWN L ++P+R++ G+V
Sbjct: 568 HEGKALLRNYRKDGSMFWNELRVAPVRDSQGEV 600
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
A++ ++ ITD +PI++ + F +++G++RA +IGRN R QG T + +
Sbjct: 499 QRAIEASVNAVLITDNRRPDNPIIYVNPAFERITGYARATVIGRNCRFLQGRDTAQPELT 558
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAV 129
IR A+ + L NY+KDG+ FW +++ V + G +H++ V
Sbjct: 559 AIRRALENRHEGKALLRNYRKDGSMFWNELRVAPVRDSQ-GEVSHYIGV 606
>gi|428302078|ref|YP_007140384.1| PAS/PAC sensor protein [Calothrix sp. PCC 6303]
gi|428238622|gb|AFZ04412.1| putative PAS/PAC sensor protein [Calothrix sp. PCC 6303]
Length = 931
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 60/100 (60%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L ++ D LP++P+VY + +F K+TGY EV+G+N RFL D + L ++
Sbjct: 541 ALAASTNGIIITDARLPNLPIVYVNQSFEKITGYSACEVIGRNSRFLQKSDHNQPALEEL 600
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +I T Q CTV + NYRKD FWN L ISP+ + K+
Sbjct: 601 QTAIDTHQCCTVLLRNYRKDGVLFWNELSISPVFDVKQKL 640
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL + ITD + PIV+ ++ F K++G+S E+IGRN R Q N+ + E+
Sbjct: 541 ALAASTNGIIITDARLPNLPIVYVNQSFEKITGYSACEVIGRNSRFLQKSDHNQPALEEL 600
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ AI + V L NY+KDG FW +S VF + + TH++ + + RK
Sbjct: 601 QTAIDTHQCCTVLLRNYRKDGVLFWNELSISPVFDVKQ-KLTHYIGIINDVSDRK 654
>gi|186682678|ref|YP_001865874.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
gi|186465130|gb|ACC80931.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
Length = 1403
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 59/100 (59%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L ++ D LP P++Y + AF K+TGY +V+GQNCRFL D+ L ++
Sbjct: 234 ALAATSNGIIIADARLPYNPIIYVNCAFEKITGYTAADVIGQNCRFLQRTDSQQPALNEL 293
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ S+Q +C V + NY KD FWN L ISPI + +GK+
Sbjct: 294 RSSLQAGTSCKVILRNYSKDGVLFWNELCISPIHDENGKL 333
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL + I D + +PI++ + F K++G++ A++IG+N R Q + + + E+
Sbjct: 234 ALAATSNGIIIADARLPYNPIIYVNCAFEKITGYTAADVIGQNCRFLQRTDSQQPALNEL 293
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R +++ +V L NY KDG FW +S + E+G+ +HF+ +Q I RK S
Sbjct: 294 RSSLQAGTSCKVILRNYSKDGVLFWNELCISPIHD-ENGKLSHFIGIQTDISQRKQAEAS 352
>gi|440798424|gb|ELR19492.1| SAM domain (Sterile alpha motif) domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 488
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 63/101 (62%)
Query: 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLY 303
Y L + +S ++ D LPD P+V+A+D F ++T Y + +++G+NCRFL G TD +
Sbjct: 49 YPYLTNVFESILVTDNELPDCPIVWANDQFERMTLYPKEDIIGRNCRFLQGNYTDPATVG 108
Query: 304 QIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGK 344
+I+ +++ ++ V ILNYR+D ++FWN I P+ K
Sbjct: 109 KIRAAVKGGESLDVEILNYRRDGTAFWNRFRILPVHKKGKK 149
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 67/104 (64%), Gaps = 2/104 (1%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+S +TD + PIV+A+ F +M+ + + +IIGRN R QG T+ T+ +IR A++
Sbjct: 57 ESILVTDNELPDCPIVWANDQFERMTLYPKEDIIGRNCRFLQGNYTDPATVGKIRAAVKG 116
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVF--GKEDGRATHFVAVQ 130
++V +LNY++DGT FW F++ V GK++G +HF+A+Q
Sbjct: 117 GESLDVEILNYRRDGTAFWNRFRILPVHKKGKKEGPVSHFIAIQ 160
>gi|456012326|gb|EMF46032.1| sensory box histidine kinase [Planococcus halocryophilus Or1]
Length = 292
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 54/85 (63%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
++ DP PD P++Y + F+ +TGY + E++G+NCRFL G T + +++ +I E+
Sbjct: 54 IVTDPSQPDNPIIYTNKTFIDMTGYSQEEIIGRNCRFLQGAGTANEDIEKMRTAIAAEEK 113
Query: 315 CTVRILNYRKDKSSFWNLLHISPIR 339
+ I NYRKD S FWN L I P+R
Sbjct: 114 VVLTIQNYRKDGSPFWNRLVIDPVR 138
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 50/75 (66%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+TDPS +PI++ ++ F+ M+G+S+ EIIGRN R QG T I ++R AI E +
Sbjct: 55 VTDPSQPDNPIIYTNKTFIDMTGYSQEEIIGRNCRFLQGAGTANEDIEKMRTAIAAEEKV 114
Query: 93 EVNLLNYKKDGTPFW 107
+ + NY+KDG+PFW
Sbjct: 115 VLTIQNYRKDGSPFW 129
>gi|448720995|ref|ZP_21703582.1| bacterio-opsin activator [Halobiforma nitratireducens JCM 10879]
gi|445780154|gb|EMA31056.1| bacterio-opsin activator [Halobiforma nitratireducens JCM 10879]
Length = 672
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 72/132 (54%), Gaps = 7/132 (5%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+++ P +++DPS+ +P+V+ +R + +++G+ ++GRN R+ QGP T+ I ++
Sbjct: 140 AIEDAPIGISLSDPSLPDNPLVYVNRAWEELTGYEEETVLGRNPRLLQGPDTDDEAIEKL 199
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRAT------HFVAVQVPIVSR 136
IR+ P V + NY++DGTPFW ++ + G E AT H+V Q + R
Sbjct: 200 ANGIRDGEPTTVEIRNYRRDGTPFWNELTIAPI-GNEGDDATADDEYAHYVGFQNDVSDR 258
Query: 137 KHMRNSGMSYSE 148
K SE
Sbjct: 259 KAAEELAEERSE 270
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 54/85 (63%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315
L DP LPD P+VY + A+ +LTGY+ V+G+N R L G DTD + ++ I+ +
Sbjct: 150 LSDPSLPDNPLVYVNRAWEELTGYEEETVLGRNPRLLQGPDTDDEAIEKLANGIRDGEPT 209
Query: 316 TVRILNYRKDKSSFWNLLHISPIRN 340
TV I NYR+D + FWN L I+PI N
Sbjct: 210 TVEIRNYRRDGTPFWNELTIAPIGN 234
>gi|414070614|ref|ZP_11406596.1| sensor protein [Pseudoalteromonas sp. Bsw20308]
gi|410806922|gb|EKS12906.1| sensor protein [Pseudoalteromonas sp. Bsw20308]
Length = 1098
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+I D + G P+VF + F K++G+ + ++IG+N R+ QGP T++++I I+ AI+ +
Sbjct: 445 ISIADAKVPGLPLVFLNSEFEKITGYKKEDMIGKNCRVLQGPNTDKKSISVIKNAIKTLK 504
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+ ++NYKKDGT FW ++S VF E + T FV +Q I +
Sbjct: 505 TQRIEIVNYKKDGTAFWNSLQISPVFD-EHSKLTAFVGIQQDITKQ 549
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 59/90 (65%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315
+ D +P +P+V+ + F K+TGY + +++G+NCR L G +TD + IK +I+T +
Sbjct: 447 IADAKVPGLPLVFLNSEFEKITGYKKEDMIGKNCRVLQGPNTDKKSISVIKNAIKTLKTQ 506
Query: 316 TVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ I+NY+KD ++FWN L ISP+ + K+
Sbjct: 507 RIEIVNYKKDGTAFWNSLQISPVFDEHSKL 536
>gi|257059911|ref|YP_003137799.1| response regulator receiver modulated diguanylate cyclase
[Cyanothece sp. PCC 8802]
gi|256590077|gb|ACV00964.1| response regulator receiver modulated diguanylate cyclase
[Cyanothece sp. PCC 8802]
Length = 481
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 62/104 (59%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L+ ++ ++ D PD P++Y + F ++TGY EV G+NCRFL G D + +
Sbjct: 166 LHQAIKATYNGIIITDATQPDNPIIYVNPGFERMTGYSLEEVKGKNCRFLQGNDRNQPEI 225
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+K +Q + C + I NYRKD S FWN + +SP+++ SGK++
Sbjct: 226 LYMKTCLQEHRQCFITIRNYRKDGSMFWNEVSLSPVKDESGKLV 269
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 6/152 (3%)
Query: 1 MDSQLGLIE--QSFNNRYTL---WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSG 55
+ QL L E Q F+ + + +H+A+ + ITD + +PI++ + GF +M+G
Sbjct: 142 LQRQLDLTEAAQEFHGQPQIDAYLLHQAIKATYNGIIITDATQPDNPIIYVNPGFERMTG 201
Query: 56 FSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLV 115
+S E+ G+N R QG N+ I+ ++ ++E R + + NY+KDG+ FW +S V
Sbjct: 202 YSLEEVKGKNCRFLQGNDRNQPEILYMKTCLQEHRQCFITIRNYRKDGSMFWNEVSLSPV 261
Query: 116 FGKEDGRATHFVAVQVPIVSRKHMRNSGMSYS 147
E G+ +++ VQ + RK + Y
Sbjct: 262 -KDESGKLVYYIGVQTDVTVRKRVEEERQRYE 292
>gi|390957015|ref|YP_006420772.1| PAS domain-containing protein [Terriglobus roseus DSM 18391]
gi|390411933|gb|AFL87437.1| PAS domain S-box [Terriglobus roseus DSM 18391]
Length = 522
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 56/90 (62%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315
+ + LPDMP++Y + AF +TGY EV G+NCRFL +TD L I+E++ ++
Sbjct: 170 IANAQLPDMPLMYVNPAFEAMTGYSLEEVEGKNCRFLQNGETDQPGLTLIREALSKQRET 229
Query: 316 TVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ NYRKD FWN L +SPIRN G++
Sbjct: 230 VAVLKNYRKDGRLFWNELALSPIRNRDGEL 259
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 18/155 (11%)
Query: 1 MDSQLGLI---EQSFNNRYTLWVHEALDEL----------PDSFTITDPSISGHPIVFAS 47
+ +QLG+ ++F RY AL+EL +I + + P+++ +
Sbjct: 129 LSAQLGVALYAHRAFARRY----RSALEELNLNRNIFRSVTSGISIANAQLPDMPLMYVN 184
Query: 48 RGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFW 107
F M+G+S E+ G+N R Q T++ + IREA+ ++R L NY+KDG FW
Sbjct: 185 PAFEAMTGYSLEEVEGKNCRFLQNGETDQPGLTLIREALSKQRETVAVLKNYRKDGRLFW 244
Query: 108 MLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+S + + DG TH V +Q+ + R + +
Sbjct: 245 NELALSPIRNR-DGELTHIVGIQMDVTERVELETA 278
>gi|344343465|ref|ZP_08774333.1| PAS sensor protein [Marichromatium purpuratum 984]
gi|343804888|gb|EGV22786.1| PAS sensor protein [Marichromatium purpuratum 984]
Length = 152
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 57/91 (62%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315
L DP D P+VYA+ AF +TGY R E++G NCRFL G D D + QI+E++ Q
Sbjct: 29 LSDPDQDDNPIVYANAAFELITGYSREEILGHNCRFLQGEDHDQEGVAQIREAMAGNQPV 88
Query: 316 TVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
TV + NYRKD S F+N I P+ + G+++
Sbjct: 89 TVTLRNYRKDGSRFYNRFTIRPLFDREGQLI 119
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 77/136 (56%), Gaps = 6/136 (4%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+ LD + T++DP +PIV+A+ F ++G+SR EI+G N R QG ++ + +
Sbjct: 18 QILDTCVNGITLSDPDQDDNPIVYANAAFELITGYSREEILGHNCRFLQGEDHDQEGVAQ 77
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR----- 136
IREA+ +P+ V L NY+KDG+ F+ F + +F +E G+ +++ +Q + ++
Sbjct: 78 IREAMAGNQPVTVTLRNYRKDGSRFYNRFTIRPLFDRE-GQLIYYLGIQHDVTNQVEAEA 136
Query: 137 KHMRNSGMSYSEDGGG 152
+ R S + D GG
Sbjct: 137 EVARLSALLAKADAGG 152
>gi|448333722|ref|ZP_21522911.1| bacterio-opsin activator [Natrinema pellirubrum DSM 15624]
gi|445621601|gb|ELY75072.1| bacterio-opsin activator [Natrinema pellirubrum DSM 15624]
Length = 657
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 60/92 (65%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ DP + D P+VY ++A+ ++TGY+ +EVVG+NCRFL G D+ + ++ ++ +
Sbjct: 138 ITISDPDMEDNPLVYVNEAYEEMTGYEYDEVVGRNCRFLQGEDSSEAAIAEMAAAVAEDY 197
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV + NYRKD + FWN + I+P+R+ G V
Sbjct: 198 PVTVELKNYRKDGTEFWNEVTIAPVRDEDGTV 229
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 69/117 (58%), Gaps = 1/117 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL+E P TI+DP + +P+V+ + + +M+G+ E++GRN R QG ++ I E+
Sbjct: 130 ALEEAPVGITISDPDMEDNPLVYVNEAYEEMTGYEYDEVVGRNCRFLQGEDSSEAAIAEM 189
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
A+ E+ P+ V L NY+KDGT FW ++ V EDG T++V Q + +RK
Sbjct: 190 AAAVAEDYPVTVELKNYRKDGTEFWNEVTIAPVR-DEDGTVTNYVGFQNDVTARKEA 245
>gi|448384535|ref|ZP_21563373.1| bacterio-opsin activator [Haloterrigena thermotolerans DSM 11522]
gi|445658601|gb|ELZ11419.1| bacterio-opsin activator [Haloterrigena thermotolerans DSM 11522]
Length = 627
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 60/92 (65%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ DP + D P+VY ++A+ ++TGY+ +EVVG+NCRFL G D+ + ++ ++ +
Sbjct: 138 ITISDPDMEDNPLVYVNEAYEEMTGYEYDEVVGRNCRFLQGEDSSEAAIAEMAAAVAEDY 197
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV + NYRKD + FWN + I+P+R+ G V
Sbjct: 198 PVTVELKNYRKDGTEFWNEVTIAPVRDEDGAV 229
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL+E P TI+DP + +P+V+ + + +M+G+ E++GRN R QG ++ I E+
Sbjct: 130 ALEEAPVGITISDPDMEDNPLVYVNEAYEEMTGYEYDEVVGRNCRFLQGEDSSEAAIAEM 189
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
A+ E+ P+ V L NY+KDGT FW ++ V EDG T++V Q + +RK
Sbjct: 190 AAAVAEDYPVTVELKNYRKDGTEFWNEVTIAPVR-DEDGAVTNYVGFQNDVTARKE 244
>gi|189194814|ref|XP_001933745.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187979624|gb|EDU46250.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 651
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 125/273 (45%), Gaps = 37/273 (13%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L + + ++DPS+ +PIVFAS GF + + + +IG+N R QGP+T + + I EA+
Sbjct: 238 LAEVYCLSDPSLPDNPIVFASEGFYNTTQYGQDYVIGKNCRFLQGPKTQKHAVKRIAEAV 297
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSY 146
+ + I LLNY++DG+PF L M+ G A +F+ Q+ I H+ G
Sbjct: 298 SKGQEISEILLNYRRDGSPFLNLV-MTAPLMDHRGAARYFIGCQIDI---SHLMEGGRGL 353
Query: 147 SEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLE------------IEDSC 194
+E+V + S L++ + L++ +D LE IE +C
Sbjct: 354 ESFEQLLNDQEMVMKPVSEPLIRQSPLEVLKELSILLNDEELEIVKHRNRVRRNSIESNC 413
Query: 195 EASDLEKRKAATAIDNILSVL--THYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQ 252
S R T I IL + T S G+ LPG + Q
Sbjct: 414 NTS---TRAVRTPIPRILVGMDTTFNSAYLPSRQFGRSGRLPG--------------VYQ 456
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVV 285
+++L+ P P + +++ S++ L++ G ++ ++
Sbjct: 457 NYILVRP-FPSLRIIFTSES-LRIPGLSQSRLM 487
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+ + + L DP LPD P+V+AS+ F T Y ++ V+G+NCRFL G T + +I E++
Sbjct: 238 LAEVYCLSDPSLPDNPIVFASEGFYNTTQYGQDYVIGKNCRFLQGPKTQKHAVKRIAEAV 297
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
Q + +LNYR+D S F NL+ +P+ + G
Sbjct: 298 SKGQEISEILLNYRRDGSPFLNLVMTAPLMDHRG 331
>gi|392556351|ref|ZP_10303488.1| sensor protein [Pseudoalteromonas undina NCIMB 2128]
Length = 1101
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+A++ +I D S+ G P+VF + F K++G+S+ E++G N + QGP T++ I
Sbjct: 436 QAIESCNVGISIADASVQGFPLVFLNSEFEKITGYSKGEMLGINCSLLQGPNTDKNAIDI 495
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
I AI+ + + +LNYKKDGT FW ++S VF E + T +V +Q I +K
Sbjct: 496 ITHAIKTLKTQRIEILNYKKDGTEFWNSLQISPVFN-EQQQLTAYVGIQQDITEQK 550
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315
+ D + P+V+ + F K+TGY + E++G NC L G +TD + I +I+T +
Sbjct: 447 IADASVQGFPLVFLNSEFEKITGYSKGEMLGINCSLLQGPNTDKNAIDIITHAIKTLKTQ 506
Query: 316 TVRILNYRKDKSSFWNLLHISPIRN 340
+ ILNY+KD + FWN L ISP+ N
Sbjct: 507 RIEILNYKKDGTEFWNSLQISPVFN 531
>gi|433592375|ref|YP_007281871.1| PAS domain S-box [Natrinema pellirubrum DSM 15624]
gi|433307155|gb|AGB32967.1| PAS domain S-box [Natrinema pellirubrum DSM 15624]
Length = 627
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 60/92 (65%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ DP + D P+VY ++A+ ++TGY+ +EVVG+NCRFL G D+ + ++ ++ +
Sbjct: 138 ITISDPDMEDNPLVYVNEAYEEMTGYEYDEVVGRNCRFLQGEDSSEAAIAEMAAAVAEDY 197
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV + NYRKD + FWN + I+P+R+ G V
Sbjct: 198 PVTVELKNYRKDGTEFWNEVTIAPVRDEDGTV 229
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL+E P TI+DP + +P+V+ + + +M+G+ E++GRN R QG ++ I E+
Sbjct: 130 ALEEAPVGITISDPDMEDNPLVYVNEAYEEMTGYEYDEVVGRNCRFLQGEDSSEAAIAEM 189
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
A+ E+ P+ V L NY+KDGT FW ++ V EDG T++V Q + +RK
Sbjct: 190 AAAVAEDYPVTVELKNYRKDGTEFWNEVTIAPVR-DEDGTVTNYVGFQNDVTARKE 244
>gi|404254832|ref|ZP_10958800.1| sensory box/GGDEF domain/EAL domain-containing protein
[Sphingomonas sp. PAMC 26621]
Length = 608
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 73/120 (60%), Gaps = 6/120 (5%)
Query: 29 DSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
DS IT+ ++ G I+F + F + +G+S E++GR R+ QGP T+ T ++R+A
Sbjct: 37 DSIIITEAEPVNLPGPRILFCNAAFERATGYSADEVLGRTPRILQGPATDPVTRAKLRDA 96
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRKHMRNSGM 144
+ + P+EV L+NY+KDGTPFW+ ++S+V + G TH+V+VQ I RK M
Sbjct: 97 LAKWEPVEVELVNYRKDGTPFWV--ELSIVPVANQAGWFTHWVSVQRDITERKAAEELAM 154
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%)
Query: 260 HLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRI 319
+LP +++ + AF + TGY +EV+G+ R L G TD ++++++ + V +
Sbjct: 48 NLPGPRILFCNAAFERATGYSADEVLGRTPRILQGPATDPVTRAKLRDALAKWEPVEVEL 107
Query: 320 LNYRKDKSSFWNLLHISPIRNASG 343
+NYRKD + FW L I P+ N +G
Sbjct: 108 VNYRKDGTPFWVELSIVPVANQAG 131
>gi|352105826|ref|ZP_08960990.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Halomonas sp. HAL1]
gi|350598249|gb|EHA14372.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Halomonas sp. HAL1]
Length = 709
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 55/89 (61%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
V+ D P +P+VY + AF +TGY E +G+NCRFL G D+D + +I+ +I +Q
Sbjct: 167 VMADATQPHLPLVYVNSAFTDITGYSAEEALGRNCRFLQGEDSDPMAIEEIRRAIVQQQD 226
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASG 343
V + NYR D + FWN L ISP+ N SG
Sbjct: 227 VQVLLCNYRFDGTLFWNQLSISPVFNNSG 255
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR 87
P+ + D + P+V+ + F ++G+S E +GRN R QG ++ I EIR AI
Sbjct: 163 PNGVVMADATQPHLPLVYVNSAFTDITGYSAEEALGRNCRFLQGEDSDPMAIEEIRRAIV 222
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSY 146
+++ ++V L NY+ DGT FW +S VF G THF+ +Q I +R+ + + ++Y
Sbjct: 223 QQQDVQVLLCNYRFDGTLFWNQLSISPVFNN-SGVCTHFIGIQQDI-TRQREQEARLAY 279
>gi|367045084|ref|XP_003652922.1| hypothetical protein THITE_2034824, partial [Thielavia terrestris
NRRL 8126]
gi|347000184|gb|AEO66586.1| hypothetical protein THITE_2034824, partial [Thielavia terrestris
NRRL 8126]
Length = 757
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 59/97 (60%), Gaps = 3/97 (3%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
S Y LG +F L DP LPD P+++ASD L ++G+ R E+VG+N R L GV TD
Sbjct: 270 SPYHGLG---DAFCLSDPLLPDNPIIHASDGLLAMSGFRRKELVGKNGRVLQGVATDPDA 326
Query: 302 LYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
++ ++I + T ILNYR D + FWNLL + P+
Sbjct: 327 ARRLSQAIASGAEVTELILNYRPDGTPFWNLLFVCPL 363
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L D+F ++DP + +PI+ AS G L MSGF R E++G+NGR+ QG T+ + +AI
Sbjct: 275 LGDAFCLSDPLLPDNPIIHASDGLLAMSGFRRKELVGKNGRVLQGVATDPDAARRLSQAI 334
Query: 87 REERPIEVNLLNYKKDGTPFW-MLFKMSLVFGKEDGRATHFVAVQV 131
+ +LNY+ DGTPFW +LF L+ E G +F+ QV
Sbjct: 335 ASGAEVTELILNYRPDGTPFWNLLFVCPLM---ERGSVRYFLGAQV 377
>gi|448677831|ref|ZP_21689021.1| HTR-like protein [Haloarcula argentinensis DSM 12282]
gi|445773506|gb|EMA24539.1| HTR-like protein [Haloarcula argentinensis DSM 12282]
Length = 748
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 1/129 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ A+DE P + P PI +A+R FL+++G++ +E+ GRN R QG T +
Sbjct: 257 IKRAMDEAPIGIILAGPKQDDAPITYANRRFLELTGYTESEVRGRNCRFLQGEATESEPV 316
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
+R A+ E P+ V L NY+KDGT FW ++ V +DG ++V Q I RK
Sbjct: 317 DAMRAAVDEGDPVSVELRNYRKDGTMFWNQVSIAPVR-DDDGTVVNYVGFQQDITERKQH 375
Query: 140 RNSGMSYSE 148
+ SE
Sbjct: 376 ERRLKALSE 384
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 63/107 (58%), Gaps = 7/107 (6%)
Query: 247 LGRIKQSF-------VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
L RIK++ +L P D P+ YA+ FL+LTGY +EV G+NCRFL G T++
Sbjct: 254 LSRIKRAMDEAPIGIILAGPKQDDAPITYANRRFLELTGYTESEVRGRNCRFLQGEATES 313
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ ++ ++ +V + NYRKD + FWN + I+P+R+ G V+
Sbjct: 314 EPVDAMRAAVDEGDPVSVELRNYRKDGTMFWNQVSIAPVRDDDGTVV 360
>gi|427707466|ref|YP_007049843.1| multi-sensor hybrid histidine kinase [Nostoc sp. PCC 7107]
gi|427359971|gb|AFY42693.1| multi-sensor hybrid histidine kinase [Nostoc sp. PCC 7107]
Length = 1567
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 60/100 (60%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L ++ D LP+ P++Y + AF +TGY E++G NC FL G D + Q+
Sbjct: 447 ALAAASDGIIIADARLPNQPIIYVNPAFELITGYSSAEIIGYNCAFLPGTDPLQPAIQQL 506
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ S++ ++C V + NYRKD S FWN L ISPI + +G++
Sbjct: 507 QTSMKAGKSCQVLLRNYRKDGSLFWNELSISPIYDDAGRL 546
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 5 LGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGR 64
L L+E++ R AL D I D + PI++ + F ++G+S AEIIG
Sbjct: 434 LKLVEETLRLR-----ERALAAASDGIIIADARLPNQPIIYVNPAFELITGYSSAEIIGY 488
Query: 65 NGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRAT 124
N G + I +++ +++ + +V L NY+KDG+ FW +S ++ + GR +
Sbjct: 489 NCAFLPGTDPLQPAIQQLQTSMKAGKSCQVLLRNYRKDGSLFWNELSISPIY-DDAGRLS 547
Query: 125 HFVAVQVPIVSRKH 138
HF+ + I RK
Sbjct: 548 HFIGIHTDISDRKQ 561
>gi|81300525|ref|YP_400733.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
[Synechococcus elongatus PCC 7942]
gi|81169406|gb|ABB57746.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Synechococcus elongatus PCC 7942]
Length = 1238
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 60/93 (64%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
S ++ D PDMP++Y + AF K+TG+ EV+G+N RFL G++T L +++ +++
Sbjct: 692 SIIIADAQQPDMPIIYVNPAFEKITGFSAAEVIGRNFRFLQGLETQQAELEEMRRALEEG 751
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
C V + +YRKD S FWN + ++P+R+ G +
Sbjct: 752 TYCEVTLRSYRKDGSLFWNQISLAPVRDQKGHL 784
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 2/125 (1%)
Query: 13 NNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72
N + LW+ A++ +S I D PI++ + F K++GFS AE+IGRN R QG
Sbjct: 676 NEQLRLWLR-AIESTGNSIIIADAQQPDMPIIYVNPAFEKITGFSAAEVIGRNFRFLQGL 734
Query: 73 RTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132
T + + E+R A+ E EV L +Y+KDG+ FW ++ V + G TH VA Q
Sbjct: 735 ETQQAELEEMRRALEEGTYCEVTLRSYRKDGSLFWNQISLAPV-RDQKGHLTHMVASQTD 793
Query: 133 IVSRK 137
+ K
Sbjct: 794 VSESK 798
>gi|56752384|ref|YP_173085.1| hypothetical protein syc2375_d [Synechococcus elongatus PCC 6301]
gi|56687343|dbj|BAD80565.1| hypothetical protein [Synechococcus elongatus PCC 6301]
Length = 1238
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 60/93 (64%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
S ++ D PDMP++Y + AF K+TG+ EV+G+N RFL G++T L +++ +++
Sbjct: 692 SIIIADAQQPDMPIIYVNPAFEKITGFSAAEVIGRNFRFLQGLETQQAELEEMRRALEEG 751
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
C V + +YRKD S FWN + ++P+R+ G +
Sbjct: 752 TYCEVTLRSYRKDGSLFWNQISLAPVRDQKGHL 784
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 2/125 (1%)
Query: 13 NNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72
N + LW+ A++ +S I D PI++ + F K++GFS AE+IGRN R QG
Sbjct: 676 NEQLRLWLR-AIESTGNSIIIADAQQPDMPIIYVNPAFEKITGFSAAEVIGRNFRFLQGL 734
Query: 73 RTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132
T + + E+R A+ E EV L +Y+KDG+ FW ++ V + G TH VA Q
Sbjct: 735 ETQQAELEEMRRALEEGTYCEVTLRSYRKDGSLFWNQISLAPV-RDQKGHLTHMVASQTD 793
Query: 133 IVSRK 137
+ K
Sbjct: 794 VSESK 798
>gi|296131526|ref|YP_003638776.1| putative PAS/PAC sensor protein [Cellulomonas flavigena DSM 20109]
gi|296023341|gb|ADG76577.1| putative PAS/PAC sensor protein [Cellulomonas flavigena DSM 20109]
Length = 570
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 58/89 (65%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTV 317
DP +P P+V+ + AF +LTGY EV G+NCRFL DTD +++++ ++ V
Sbjct: 37 DPRVPGDPVVWVNAAFTRLTGYTAEEVRGRNCRFLQCADTDPEAIHRLRTALAHGDDVQV 96
Query: 318 RILNYRKDKSSFWNLLHISPIRNASGKVL 346
+LN RKD S FWN L I+ +R+A+G+V+
Sbjct: 97 VLLNVRKDGSPFWNQLAITQLRDATGQVV 125
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L P T++DP + G P+V+ + F +++G++ E+ GRN R Q T+ I +R
Sbjct: 26 LQAAPLPMTVSDPRVPGDPVVWVNAAFTRLTGYTAEEVRGRNCRFLQCADTDPEAIHRLR 85
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
A+ ++V LLN +KDG+PFW ++ + G+ H V VQV + +
Sbjct: 86 TALAHGDDVQVVLLNVRKDGSPFWNQLAITQLR-DATGQVVHRVGVQVDVTA 136
>gi|315126040|ref|YP_004068043.1| sensor protein [Pseudoalteromonas sp. SM9913]
gi|315014554|gb|ADT67892.1| putative sensor protein [Pseudoalteromonas sp. SM9913]
Length = 1101
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+A++ +I D S+ G P+VF + F K++G+S+ E++G N + QGP T++ I
Sbjct: 436 QAIESCNVGISIADASVQGFPLVFLNSEFEKITGYSKEEMLGINCSLLQGPNTDKNAIDI 495
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
I AI+ + + +LNYKKDGT FW ++S VF E + T +V +Q I +K
Sbjct: 496 ITNAIKTLKTQRIEILNYKKDGTEFWNSLQISPVFN-EQQQLTAYVGIQQDITEQK 550
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315
+ D + P+V+ + F K+TGY + E++G NC L G +TD + I +I+T +
Sbjct: 447 IADASVQGFPLVFLNSEFEKITGYSKEEMLGINCSLLQGPNTDKNAIDIITNAIKTLKTQ 506
Query: 316 TVRILNYRKDKSSFWNLLHISPIRN 340
+ ILNY+KD + FWN L ISP+ N
Sbjct: 507 RIEILNYKKDGTEFWNSLQISPVFN 531
>gi|383323933|ref|YP_005384787.1| chromatic acclimation sensor CcaS/ScaS/Hik32 [Synechocystis sp. PCC
6803 substr. GT-I]
gi|383327102|ref|YP_005387956.1| chromatic acclimation sensor CcaS/ScaS/Hik32 [Synechocystis sp. PCC
6803 substr. PCC-P]
gi|383492986|ref|YP_005410663.1| chromatic acclimation sensor CcaS/ScaS/Hik32 [Synechocystis sp. PCC
6803 substr. PCC-N]
gi|384438254|ref|YP_005652979.1| chromatic acclimation sensor CcaS/ScaS/Hik32 [Synechocystis sp. PCC
6803]
gi|114848882|gb|ABI83649.1| chromatic acclimation sensor [Synechocystis sp. PCC 6803]
gi|339275287|dbj|BAK51774.1| chromatic acclimation sensor CcaS/ScaS/Hik32 [Synechocystis sp. PCC
6803]
gi|359273253|dbj|BAL30772.1| chromatic acclimation sensor CcaS/ScaS/Hik32 [Synechocystis sp. PCC
6803 substr. GT-I]
gi|359276423|dbj|BAL33941.1| chromatic acclimation sensor CcaS/ScaS/Hik32 [Synechocystis sp. PCC
6803 substr. PCC-N]
gi|359279593|dbj|BAL37110.1| chromatic acclimation sensor CcaS/ScaS/Hik32 [Synechocystis sp. PCC
6803 substr. PCC-P]
Length = 753
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 12/160 (7%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
I DP G I++ + F K++G++ E++G+ R+ QGP+T+R + +R+AI + + +
Sbjct: 406 IDDP---GPRILYVNEAFTKITGYTAEEMLGKTPRVLQGPKTSRTELDRVRQAISQWQSV 462
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGG 152
V ++NY+KDG+ FW+ F + V K G TH++AVQ + R+ ++ +
Sbjct: 463 TVEVINYRKDGSEFWVEFSLVPVANK-TGFYTHWIAVQRDVTERRRTEEVRLALEREKEL 521
Query: 153 SRLREIVFGSCRRE--------VCSDSLLDLDRVLALDSD 184
SRL+ F E + + LL+ V LD D
Sbjct: 522 SRLKTRFFSMASHEFRTPLSTALAAAQLLENSEVAWLDPD 561
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILN 321
P ++Y ++AF K+TGY E++G+ R L G T T L +++++I Q+ TV ++N
Sbjct: 409 PGPRILYVNEAFTKITGYTAEEMLGKTPRVLQGPKTSRTELDRVRQAISQWQSVTVEVIN 468
Query: 322 YRKDKSSFWNLLHISPIRNASG 343
YRKD S FW + P+ N +G
Sbjct: 469 YRKDGSEFWVEFSLVPVANKTG 490
>gi|393769090|ref|ZP_10357618.1| signal transduction histidine kinase [Methylobacterium sp. GXF4]
gi|392725331|gb|EIZ82668.1| signal transduction histidine kinase [Methylobacterium sp. GXF4]
Length = 346
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 60/101 (59%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L + R V+ D PD P+ + +DAFL LTG+ +E++G+NCR L G TD +
Sbjct: 2 LVDAFARSPSPMVITDARAPDNPITWVNDAFLGLTGFATDELLGRNCRMLQGPGTDPAEV 61
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+I +I+ + T +LNYRKD + +W+ + ++P+ + +G
Sbjct: 62 ARIHAAIEAGEPVTAELLNYRKDGTPYWSAMTVTPVHDEAG 102
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+A P ITD +PI + + FL ++GF+ E++GRN RM QGP T+ +
Sbjct: 4 DAFARSPSPMVITDARAPDNPITWVNDAFLGLTGFATDELLGRNCRMLQGPGTDPAEVAR 63
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
I AI P+ LLNY+KDGTP+W ++ V E G A +F A Q
Sbjct: 64 IHAAIEAGEPVTAELLNYRKDGTPYWSAMTVTPVH-DEAGLA-YFYAAQA 111
>gi|159487329|ref|XP_001701675.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280894|gb|EDP06650.1| predicted protein [Chlamydomonas reinhardtii]
Length = 104
Score = 86.3 bits (212), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 59/87 (67%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315
+ D LPDMP++YA+ F++ TGY V+G+NCRFL G TD+ + +K++I ++C
Sbjct: 3 IADCSLPDMPLIYANAGFVRTTGYSAAYVLGKNCRFLQGEGTDSQPVLDLKKAISEGKSC 62
Query: 316 TVRILNYRKDKSSFWNLLHISPIRNAS 342
V++LNY+K+ F N L ++PI +A+
Sbjct: 63 VVQLLNYKKNGDPFVNYLSLTPIHDAA 89
Score = 85.5 bits (210), Expect = 3e-14, Method: Composition-based stats.
Identities = 38/102 (37%), Positives = 64/102 (62%)
Query: 32 TITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91
TI D S+ P+++A+ GF++ +G+S A ++G+N R QG T+ + ++++++AI E +
Sbjct: 2 TIADCSLPDMPLIYANAGFVRTTGYSAAYVLGKNCRFLQGEGTDSQPVLDLKKAISEGKS 61
Query: 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
V LLNYKK+G PF ++ + GR TH+V VQ I
Sbjct: 62 CVVQLLNYKKNGDPFVNYLSLTPIHDAATGRLTHYVGVQSDI 103
>gi|22298825|ref|NP_682072.1| two-component hybrid sensor and regulator [Thermosynechococcus
elongatus BP-1]
gi|22295006|dbj|BAC08834.1| two-component hybrid sensor and regulator [Thermosynechococcus
elongatus BP-1]
Length = 1353
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 56/92 (60%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ D PD P++Y + AF ++TGY EV+G+NCRFL G D I+ +I+ Q
Sbjct: 330 IVITDYRQPDNPVIYVNPAFERMTGYRATEVIGKNCRFLQGSDRHQPGATAIRNAIKKGQ 389
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+C V + NYRK+ FWN L ISPI N G++
Sbjct: 390 SCRVVLRNYRKNGQLFWNELAISPIYNEFGEI 421
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+ ITD +P+++ + F +M+G+ E+IG+N R QG ++ IR AI++
Sbjct: 328 NGIVITDYRQPDNPVIYVNPAFERMTGYRATEVIGKNCRFLQGSDRHQPGATAIRNAIKK 387
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ V L NY+K+G FW +S ++ E G TH++ +Q + R+
Sbjct: 388 GQSCRVVLRNYRKNGQLFWNELAISPIYN-EFGEITHYIGIQSDVTERQ 435
>gi|336239517|ref|XP_003342678.1| hypothetical protein SMAC_10293 [Sordaria macrospora k-hell]
Length = 246
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 57/78 (73%)
Query: 268 YASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKS 327
+A+ AFL++TGY +EV+G+NCRFL G DTD + +I E+I+ + +V I+NY+K+ S
Sbjct: 82 FANPAFLQMTGYAADEVLGRNCRFLQGPDTDPDTVAEISEAIRRHRETSVEIINYKKNGS 141
Query: 328 SFWNLLHISPIRNASGKV 345
+FWN L ISP+ + G++
Sbjct: 142 AFWNALFISPVLDGEGEL 159
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 45 FASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGT 104
FA+ FL+M+G++ E++GRN R QGP T+ T+ EI EAIR R V ++NYKK+G+
Sbjct: 82 FANPAFLQMTGYAADEVLGRNCRFLQGPDTDPDTVAEISEAIRRHRETSVEIINYKKNGS 141
Query: 105 PFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
FW +S V E G ++ A Q+ + R+
Sbjct: 142 AFWNALFISPVLDGE-GELRYYFASQLDVTRRR 173
>gi|251773125|gb|EES53679.1| diguanylate cyclase with PAS/PAC sensor [Leptospirillum
ferrodiazotrophum]
Length = 1354
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 58/80 (72%)
Query: 266 MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKD 325
++Y ++AF +TGY +EVVG++CR L G +D + +I++++ + Q+ +ILNYRKD
Sbjct: 762 IIYTNEAFTTITGYRHDEVVGRDCRLLQGEGSDRETVDEIRQALDSGQSYRGQILNYRKD 821
Query: 326 KSSFWNLLHISPIRNASGKV 345
S+FWNLL +SP+RN+ G +
Sbjct: 822 GSTFWNLLTLSPVRNSEGAI 841
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 71/127 (55%), Gaps = 6/127 (4%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL + + ITD S I++ + F ++G+ E++GR+ R+ QG ++R T+ EI
Sbjct: 745 ALVAVHEGVIITD---SQRRIIYTNEAFTTITGYRHDEVVGRDCRLLQGEGSDRETVDEI 801
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM--R 140
R+A+ + +LNY+KDG+ FW L +S V E G THFV V I + + +
Sbjct: 802 RQALDSGQSYRGQILNYRKDGSTFWNLLTLSPVRNSE-GAITHFVGVLNDISEFRELLAQ 860
Query: 141 NSGMSYS 147
NS +++S
Sbjct: 861 NSRLTFS 867
>gi|300869179|ref|ZP_07113775.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(S) [Oscillatoria sp. PCC 6506]
gi|300332828|emb|CBN58973.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(S) [Oscillatoria sp. PCC 6506]
Length = 1041
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 1/130 (0%)
Query: 8 IEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGR 67
IE+S + + A+ + ITD + S +P ++ + F +M+G+ R EI+G+N R
Sbjct: 31 IERSRSEERLQLMERAIASSSNGIIITDATQSDNPTIYVNPSFERMTGYQRDEILGKNCR 90
Query: 68 MFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
+ Q N+ + E+R A+ E + +V L NY+KDGTPFW +S V+ THFV
Sbjct: 91 ILQRADRNQPALKEVRTALNEGKECQVVLKNYRKDGTPFWNELSISPVYNTRR-HLTHFV 149
Query: 128 AVQVPIVSRK 137
+Q I RK
Sbjct: 150 GIQTDITDRK 159
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 15/134 (11%)
Query: 207 AIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPM 266
AI N+L+ S+ RL +R I+SS ++ D D P
Sbjct: 22 AIANVLAAAIERSRSEERLQLMERA-------IASS--------SNGIIITDATQSDNPT 66
Query: 267 VYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDK 326
+Y + +F ++TGY R+E++G+NCR L D + L +++ ++ + C V + NYRKD
Sbjct: 67 IYVNPSFERMTGYQRDEILGKNCRILQRADRNQPALKEVRTALNEGKECQVVLKNYRKDG 126
Query: 327 SSFWNLLHISPIRN 340
+ FWN L ISP+ N
Sbjct: 127 TPFWNELSISPVYN 140
>gi|76803395|ref|YP_327664.1| signal-transducing histidine kinase [Natronomonas pharaonis DSM
2160]
gi|76559210|emb|CAI50812.1| sensor box histidine kinase [Natronomonas pharaonis DSM 2160]
Length = 596
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 60/90 (66%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315
+ D D+P+ Y ++ F+++TGY R EV+G+NCRFL G T + Q++ +I+ +
Sbjct: 145 IADARKDDLPITYVNNRFVEITGYARAEVLGRNCRFLQGEATRDEPIAQLRAAIERGETA 204
Query: 316 TVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV + NYRKD + FWN + +SP++N +G+V
Sbjct: 205 TVELRNYRKDGTMFWNRVTVSPLKNHNGEV 234
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNR 76
T W EA+ E P +I D PI + + F++++G++RAE++GRN R QG T
Sbjct: 130 TFW-EEAMHEAPVGISIADARKDDLPITYVNNRFVEITGYARAEVLGRNCRFLQGEATRD 188
Query: 77 RTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
I ++R AI V L NY+KDGT FW +S +G TH++ Q I
Sbjct: 189 EPIAQLRAAIERGETATVELRNYRKDGTMFWNRVTVS-PLKNHNGEVTHYIGFQEDISEA 247
Query: 137 K 137
K
Sbjct: 248 K 248
>gi|164424400|ref|XP_962122.2| hypothetical protein NCU07268 [Neurospora crassa OR74A]
gi|157070496|gb|EAA32886.2| hypothetical protein NCU07268 [Neurospora crassa OR74A]
Length = 717
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 219 SQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278
SQL RL + P S Y LG +F L D PD P+VYAS+ FL++ G
Sbjct: 187 SQLANRLKTCLSVTQPSSSSPFKSTYPGLG---NAFCLTDSWKPDNPIVYASEGFLRMFG 243
Query: 279 YDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
++R+E++ QNCR + G T+ + +++ +I + T I+NYRKD++ FWN L I P+
Sbjct: 244 FERHEILQQNCRCMQGNSTNGDAVRRMRNAIFMGREHTEIIVNYRKDETPFWNFLFICPL 303
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 61/108 (56%), Gaps = 4/108 (3%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L ++F +TD +PIV+AS GFL+M GF R EI+ +N R QG TN + +R AI
Sbjct: 215 LGNAFCLTDSWKPDNPIVYASEGFLRMFGFERHEILQQNCRCMQGNSTNGDAVRRMRNAI 274
Query: 87 REERPIEVNLLNYKKDGTPFW-MLFKMSLVFGKEDGRATHFVAVQVPI 133
R ++NY+KD TPFW LF LV EDG + + Q+ I
Sbjct: 275 FMGREHTEIIVNYRKDETPFWNFLFICPLV---EDGIVRYCLGGQINI 319
>gi|209526785|ref|ZP_03275306.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Arthrospira maxima CS-328]
gi|423066822|ref|ZP_17055612.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Arthrospira platensis C1]
gi|209492746|gb|EDZ93080.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Arthrospira maxima CS-328]
gi|406711587|gb|EKD06787.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Arthrospira platensis C1]
Length = 1276
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 73/126 (57%), Gaps = 1/126 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ + ITD + S + ++FA+ GF K++G+SR ++IGRN R QG ++ + + E+
Sbjct: 338 AINSSRNGIIITDATESDNRVIFANSGFEKITGYSRHQVIGRNCRFLQGRDSDPKALAEL 397
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R AI E R + L Y+ DG+ FW +S V+ + G T+F+ +Q I RK +
Sbjct: 398 RSAIEEGRECNIELKKYRPDGSSFWNELSISPVYNNQ-GFLTNFIGIQTDISDRKQAEAN 456
Query: 143 GMSYSE 148
+S SE
Sbjct: 457 LLSKSE 462
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 58/93 (62%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ D D +++A+ F K+TGY R++V+G+NCRFL G D+D L +++ +I+
Sbjct: 343 RNGIIITDATESDNRVIFANSGFEKITGYSRHQVIGRNCRFLQGRDSDPKALAELRSAIE 402
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+ C + + YR D SSFWN L ISP+ N G
Sbjct: 403 EGRECNIELKKYRPDGSSFWNELSISPVYNNQG 435
>gi|336451390|ref|ZP_08621828.1| diguanylate cyclase (GGDEF) domain-containing protein [Idiomarina
sp. A28L]
gi|336281761|gb|EGN75033.1| diguanylate cyclase (GGDEF) domain-containing protein [Idiomarina
sp. A28L]
Length = 880
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 68/109 (62%), Gaps = 1/109 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+ I D G+P+V+ + F +++G+S AE++G N ++ QG T+ R I +IR +++
Sbjct: 337 NGIVIADARQQGYPLVYVNPAFQRITGYSAAEMLGNNCKVLQGEGTDSRAIEQIRNCLKK 396
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
ER ++ + NY+KDGTPFW ++ V K +G TH++ +Q + +RK
Sbjct: 397 ERDVQTIIRNYRKDGTPFWNDLYIAPVRDK-NGVLTHYIGIQNDVTARK 444
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 55/90 (61%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ D P+VY + AF ++TGY E++G NC+ L G TD+ + QI+ ++ E+
Sbjct: 339 IVIADARQQGYPLVYVNPAFQRITGYSAAEMLGNNCKVLQGEGTDSRAIEQIRNCLKKER 398
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASG 343
I NYRKD + FWN L+I+P+R+ +G
Sbjct: 399 DVQTIIRNYRKDGTPFWNDLYIAPVRDKNG 428
>gi|376003464|ref|ZP_09781274.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) and
GGDEF and EAL domains (modular protein) [Arthrospira sp.
PCC 8005]
gi|375328121|emb|CCE17027.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) and
GGDEF and EAL domains (modular protein) [Arthrospira sp.
PCC 8005]
Length = 1279
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 73/126 (57%), Gaps = 1/126 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ + ITD + S + ++FA+ GF K++G+SR ++IGRN R QG ++ + + E+
Sbjct: 341 AINSSRNGIIITDATESDNRVIFANSGFEKITGYSRHQVIGRNCRFLQGRDSDPKALAEL 400
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R AI E R + L Y+ DG+ FW +S V+ + G T+F+ +Q I RK +
Sbjct: 401 RSAIEEGRECNIELKKYRPDGSSFWNELSISPVYNNQ-GFLTNFIGIQTDISDRKQAEAN 459
Query: 143 GMSYSE 148
+S SE
Sbjct: 460 LLSKSE 465
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 58/93 (62%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ D D +++A+ F K+TGY R++V+G+NCRFL G D+D L +++ +I+
Sbjct: 346 RNGIIITDATESDNRVIFANSGFEKITGYSRHQVIGRNCRFLQGRDSDPKALAELRSAIE 405
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+ C + + YR D SSFWN L ISP+ N G
Sbjct: 406 EGRECNIELKKYRPDGSSFWNELSISPVYNNQG 438
>gi|448721018|ref|ZP_21703605.1| bacterio-opsin activator [Halobiforma nitratireducens JCM 10879]
gi|445780177|gb|EMA31079.1| bacterio-opsin activator [Halobiforma nitratireducens JCM 10879]
Length = 633
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 59/92 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ DP D P+VY +DA+ ++TGY ++VVG+NCR L G D+ + ++ +I +
Sbjct: 136 ITISDPDREDNPLVYVNDAYEEMTGYSYDDVVGRNCRLLQGEDSSEEAIAEMAAAIDEDY 195
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV I NYRKD + FWN + I+P+RN +G+V
Sbjct: 196 PVTVEIKNYRKDGTEFWNEVTIAPVRNDAGEV 227
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 69/117 (58%), Gaps = 1/117 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++E P TI+DP +P+V+ + + +M+G+S +++GRN R+ QG ++ I E+
Sbjct: 128 AINEAPVGITISDPDREDNPLVYVNDAYEEMTGYSYDDVVGRNCRLLQGEDSSEEAIAEM 187
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
AI E+ P+ V + NY+KDGT FW ++ V + G T++V Q I +RK
Sbjct: 188 AAAIDEDYPVTVEIKNYRKDGTEFWNEVTIAPVR-NDAGEVTNYVGFQNDITARKEA 243
>gi|134094165|ref|YP_001099240.1| sensor/regulator protein [Herminiimonas arsenicoxydans]
gi|133738068|emb|CAL61113.1| putative two-component response regulator [Herminiimonas
arsenicoxydans]
Length = 818
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 59/90 (65%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V++D P MP++Y + AF +TGY E +G+NC+FL G+DTD L +++ +I+ ++
Sbjct: 273 IVIVDTATPGMPLIYVNGAFETITGYSSEEAIGRNCKFLQGMDTDQPELGKLRAAIREQR 332
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+V + NY KD S F N L+I+P+ + SG
Sbjct: 333 PASVLLRNYHKDGSMFLNELYIAPVSDTSG 362
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 58/107 (54%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ + I D + G P+++ + F ++G+S E IGRN + QG T++ + ++
Sbjct: 265 AIEACVNPIVIVDTATPGMPLIYVNGAFETITGYSSEEAIGRNCKFLQGMDTDQPELGKL 324
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAV 129
R AIRE+RP V L NY KDG+ F ++ V G HFV V
Sbjct: 325 RAAIREQRPASVLLRNYHKDGSMFLNELYIAPVSDTSGGAVGHFVGV 371
>gi|119483270|ref|ZP_01618684.1| hypothetical protein L8106_04436 [Lyngbya sp. PCC 8106]
gi|119458037|gb|EAW39159.1| hypothetical protein L8106_04436 [Lyngbya sp. PCC 8106]
Length = 1006
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 58/92 (63%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ + D ++Y + F +TGY R EV+G+NCRFL G D L +++++I+ +
Sbjct: 186 IVITEATQGDNTIIYVNPGFESITGYSREEVIGKNCRFLQGSDRHQPALKELRKAIKAGE 245
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+C+V + NYRK+ FWN L ISP+RN GK+
Sbjct: 246 SCSVTLRNYRKEGRLFWNELTISPVRNTWGKL 277
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 1/126 (0%)
Query: 13 NNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72
N R+ + + + IT+ + + I++ + GF ++G+SR E+IG+N R QG
Sbjct: 168 NQRWLQLLERGIAASSNGIVITEATQGDNTIIYVNPGFESITGYSREEVIGKNCRFLQGS 227
Query: 73 RTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132
++ + E+R+AI+ V L NY+K+G FW +S V G+ TH++ +Q
Sbjct: 228 DRHQPALKELRKAIKAGESCSVTLRNYRKEGRLFWNELTISPVRNTW-GKLTHYIGIQTD 286
Query: 133 IVSRKH 138
I RK
Sbjct: 287 ISERKQ 292
>gi|119493186|ref|ZP_01624061.1| hypothetical protein L8106_15704 [Lyngbya sp. PCC 8106]
gi|119452751|gb|EAW33928.1| hypothetical protein L8106_15704 [Lyngbya sp. PCC 8106]
Length = 1653
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 86/155 (55%), Gaps = 12/155 (7%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ + ITDP+ +PI++A+ +++GFS +E+IG N R FQ ++ I E+
Sbjct: 609 AINFTSNGILITDPNQPDNPIIYANSAIERITGFSPSEMIGYNPRFFQQNNRDQAGINEL 668
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R+A+++ + V L NY+ DGTP W+ +S VF + G THF+ VQ I R+
Sbjct: 669 RQAVQQAKECNVILQNYRADGTPIWIELYISPVFN-DAGLLTHFIGVQNDITERRQTE-V 726
Query: 143 GMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDR 177
+ SE +RLR ++ ++ D ++ +D+
Sbjct: 727 ALQASE----ARLRGLL------DIAQDGIISIDQ 751
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 15/137 (10%)
Query: 207 AIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPM 266
AI NIL+ + T RL +R + F S+ + I+ DP+ PD P+
Sbjct: 585 AIANILATAVEKVESTERLRLLER----AINFTSNGILIT-----------DPNQPDNPI 629
Query: 267 VYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDK 326
+YA+ A ++TG+ +E++G N RF + D + ++++++Q + C V + NYR D
Sbjct: 630 IYANSAIERITGFSPSEMIGYNPRFFQQNNRDQAGINELRQAVQQAKECNVILQNYRADG 689
Query: 327 SSFWNLLHISPIRNASG 343
+ W L+ISP+ N +G
Sbjct: 690 TPIWIELYISPVFNDAG 706
>gi|395490894|ref|ZP_10422473.1| multi-sensor hybrid histidine kinase [Sphingomonas sp. PAMC 26617]
Length = 557
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
ITDP +PIVFA++ F +++G++ E++G N R QGP T T+ + AI
Sbjct: 37 MVITDPRKPDNPIVFANKSFYRLTGYAHDEVLGHNCRFLQGPETEPATVELVCAAIAARE 96
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
PIE+++ NY KDG PFW ++ VF DG +F A Q + +
Sbjct: 97 PIEIDIRNYTKDGHPFWNRLLIAPVF-DTDGSIAYFFASQFDVTA 140
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 56/95 (58%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ V+ DP PD P+V+A+ +F +LTGY +EV+G NCRFL G +T+ + + +I
Sbjct: 34 RMPMVITDPRKPDNPIVFANKSFYRLTGYAHDEVLGHNCRFLQGPETEPATVELVCAAIA 93
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ + I NY KD FWN L I+P+ + G +
Sbjct: 94 AREPIEIDIRNYTKDGHPFWNRLLIAPVFDTDGSI 128
>gi|421618984|ref|ZP_16059950.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Pseudomonas stutzeri KOS6]
gi|409779076|gb|EKN58752.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Pseudomonas stutzeri KOS6]
Length = 1064
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 4/125 (3%)
Query: 221 LTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYD 280
LT R + ++ + + + SL S + V++D DMP++YA+ AF ++TGY
Sbjct: 353 LTLRDITDRKTAERQLRLLQRSLEASYNGV----VIVDAQASDMPIIYANPAFERITGYP 408
Query: 281 RNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRN 340
EVVG+NCRFL G D D +I+ + + V + N+R+D +FWN L+ISPI +
Sbjct: 409 PTEVVGKNCRFLQGPDRDPLRSEEIRRGLSQARDVHVVVRNFRRDGQAFWNDLYISPIFD 468
Query: 341 ASGKV 345
G V
Sbjct: 469 ERGVV 473
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 13/136 (9%)
Query: 2 DSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEI 61
+ QL L+++S Y + I D S PI++A+ F +++G+ E+
Sbjct: 365 ERQLRLLQRSLEASY------------NGVVIVDAQASDMPIIYANPAFERITGYPPTEV 412
Query: 62 IGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDG 121
+G+N R QGP + EIR + + R + V + N+++DG FW +S +F E G
Sbjct: 413 VGKNCRFLQGPDRDPLRSEEIRRGLSQARDVHVVVRNFRRDGQAFWNDLYISPIF-DERG 471
Query: 122 RATHFVAVQVPIVSRK 137
+HFV VQ I RK
Sbjct: 472 VVSHFVGVQNDISERK 487
>gi|429221706|ref|YP_007174032.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Deinococcus peraridilitoris DSM 19664]
gi|429132569|gb|AFZ69583.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Deinococcus peraridilitoris DSM 19664]
Length = 297
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 72/131 (54%), Gaps = 6/131 (4%)
Query: 12 FNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQG 71
F+ T VH A + L I + PI++ + F ++G+ +EI+GRN R QG
Sbjct: 7 FSQILTRAVHAATNGL-----IVTQADGDFPILYCNPAFETLTGYPASEILGRNCRFLQG 61
Query: 72 PRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
P T+ T ++REA+ ++V +LNY++DGTPFW ++ + E GR THFV VQ
Sbjct: 62 PGTDAYTRTQMREALCAGLSLDVVILNYRRDGTPFWNALNLAPIH-DEQGRVTHFVGVQT 120
Query: 132 PIVSRKHMRNS 142
+ R ++ +
Sbjct: 121 DVTDRVRLQRA 131
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322
D P++Y + AF LTGY +E++G+NCRFL G TD Q++E++ + V ILNY
Sbjct: 30 DFPILYCNPAFETLTGYPASEILGRNCRFLQGPGTDAYTRTQMREALCAGLSLDVVILNY 89
Query: 323 RKDKSSFWNLLHISPIRNASGKV 345
R+D + FWN L+++PI + G+V
Sbjct: 90 RRDGTPFWNALNLAPIHDEQGRV 112
>gi|407797304|ref|ZP_11144249.1| blue-light photoreceptor [Salimicrobium sp. MJ3]
gi|407018367|gb|EKE31094.1| blue-light photoreceptor [Salimicrobium sp. MJ3]
Length = 269
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 61/93 (65%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
++ R+ V+ DP D P+VY + F +LTGY+ +V+G+NCRFL G DT++ L +I
Sbjct: 21 AVDRVGVGVVIADPEQEDTPVVYVNKGFEELTGYEAKDVLGRNCRFLQGEDTESENLDKI 80
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
++++++++ V + NYRKD S FWN L I +
Sbjct: 81 RDALKSKENMKVELRNYRKDGSEFWNELQIYTV 113
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Query: 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRT 78
++ A+D + I DP P+V+ ++GF +++G+ +++GRN R QG T
Sbjct: 17 FIRAAVDRVGVGVVIADPEQEDTPVVYVNKGFEELTGYEAKDVLGRNCRFLQGEDTESEN 76
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+ +IR+A++ + ++V L NY+KDG+ FW ++ VF E FV VQ + R
Sbjct: 77 LDKIRDALKSKENMKVELRNYRKDGSEFWNELQIYTVF-IEKLNQDFFVGVQQDVTKR 133
>gi|422643880|ref|ZP_16707019.1| PAS:GGDEF protein [Pseudomonas syringae pv. maculicola str. ES4326]
gi|330957433|gb|EGH57693.1| PAS:GGDEF protein [Pseudomonas syringae pv. maculicola str. ES4326]
Length = 757
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ ITD + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 179 DAILITDAEPIDLPGPRIVYCNPAFLAITGFTEDEVIGRTPRILQCEDTSRETLDVIREA 238
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ RP+EV LLN +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 239 LTHWRPVEVELLNTRKDGSQFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 289
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%)
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320
LP +VY + AFL +TG+ +EV+G+ R L DT L I+E++ + V +L
Sbjct: 191 LPGPRIVYCNPAFLAITGFTEDEVIGRTPRILQCEDTSRETLDVIREALTHWRPVEVELL 250
Query: 321 NYRKDKSSFWNLLHISPIRNASG 343
N RKD S FW L I P+ N G
Sbjct: 251 NTRKDGSQFWVELSIVPVANEKG 273
>gi|428312366|ref|YP_007123343.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428253978|gb|AFZ19937.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 621
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 55/88 (62%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTV 317
DPH P++YA+ F ++TGY R +++G+NCRFL G DT L ++ +I Q V
Sbjct: 199 DPHQAGNPVIYANSGFERITGYKREDILGKNCRFLQGTDTKQPALDELHRAIAKGQGTQV 258
Query: 318 RILNYRKDKSSFWNLLHISPIRNASGKV 345
+ NYRKD + FWN ++P+R+ +G +
Sbjct: 259 VLRNYRKDGTLFWNEFCLNPVRDEAGHL 286
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 66/109 (60%), Gaps = 1/109 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+ I+DP +G+P+++A+ GF +++G+ R +I+G+N R QG T + + E+ AI +
Sbjct: 193 NGILISDPHQAGNPVIYANSGFERITGYKREDILGKNCRFLQGTDTKQPALDELHRAIAK 252
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ +V L NY+KDGT FW F ++ V E G THF+ VQ I K
Sbjct: 253 GQGTQVVLRNYRKDGTLFWNEFCLNPV-RDEAGHLTHFIGVQTDITEHK 300
>gi|229819115|ref|YP_002880641.1| PAS/PAC sensor protein [Beutenbergia cavernae DSM 12333]
gi|229565028|gb|ACQ78879.1| putative PAS/PAC sensor protein [Beutenbergia cavernae DSM 12333]
Length = 580
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 58/93 (62%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
S V+ D D P+V+ ++AF + TGY R+ +G+NCRFL G TD + ++ +++ +
Sbjct: 17 SIVVTDAREDDEPIVWVNEAFTRTTGYARDAALGRNCRFLQGPATDPAAVARLGLAVRAD 76
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +LNYR D + FWN + ISP+R+ +G V
Sbjct: 77 EPVAAALLNYRPDGTPFWNDVSISPVRDDAGAV 109
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
S +TD PIV+ + F + +G++R +GRN R QGP T+ + + A+R +
Sbjct: 17 SIVVTDAREDDEPIVWVNEAFTRTTGYARDAALGRNCRFLQGPATDPAAVARLGLAVRAD 76
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
P+ LLNY+ DGTPFW +S V + G TH V VQV + +R
Sbjct: 77 EPVAAALLNYRPDGTPFWNDVSISPVR-DDAGAVTHHVGVQVDVTARA 123
>gi|119488887|ref|ZP_01621849.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
gi|119455048|gb|EAW36190.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
Length = 1261
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Query: 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTN 75
Y + A+D + I D ++ P+ + + GF + +G+S E+IG N R QG +
Sbjct: 337 YLRLLQRAVDASSNGIVIADAQLTDKPLTYVNSGFERTTGYSADEVIGENCRFLQGEDID 396
Query: 76 RRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
+ ++E+R +I E R ++ + NY+KDGTPFW +S V E+G THF+ +Q I
Sbjct: 397 QPNLIEMRNSIAEGRETKIIVRNYRKDGTPFWNKLSISPVHD-EEGNLTHFIGIQEDISD 455
Query: 136 R 136
R
Sbjct: 456 R 456
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 54/92 (58%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ D L D P+ Y + F + TGY +EV+G+NCRFL G D D L +++ SI +
Sbjct: 352 IVIADAQLTDKPLTYVNSGFERTTGYSADEVIGENCRFLQGEDIDQPNLIEMRNSIAEGR 411
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ + NYRKD + FWN L ISP+ + G +
Sbjct: 412 ETKIIVRNYRKDGTPFWNKLSISPVHDEEGNL 443
>gi|448584367|ref|ZP_21647241.1| HTR-like protein [Haloferax gibbonsii ATCC 33959]
gi|445728265|gb|ELZ79871.1| HTR-like protein [Haloferax gibbonsii ATCC 33959]
Length = 369
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 56/94 (59%)
Query: 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIK 306
L + + V+IDP PD P+VY ++AF LTGYD V G+NC FL+G +TD + +I+
Sbjct: 253 LDAVGVAIVVIDPSKPDNPVVYCNEAFEALTGYDAAAVEGRNCGFLHGPETDPETVAEIR 312
Query: 307 ESIQTEQACTVRILNYRKDKSSFWNLLHISPIRN 340
+I + + I +Y D FWN L I P+R+
Sbjct: 313 SAIDAGEPISAEIRSYDADGEPFWNHLDIQPVRD 346
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
LD + + + DPS +P+V+ + F ++G+ A + GRN GP T+ T+ EIR
Sbjct: 253 LDAVGVAIVVIDPSKPDNPVVYCNEAFEALTGYDAAAVEGRNCGFLHGPETDPETVAEIR 312
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDG 121
AI PI + +Y DG PFW + V ED
Sbjct: 313 SAIDAGEPISAEIRSYDADGEPFWNHLDIQPVRDDEDA 350
>gi|392956616|ref|ZP_10322142.1| blue light GTP-binding receptor [Bacillus macauensis ZFHKF-1]
gi|391877113|gb|EIT85707.1| blue light GTP-binding receptor [Bacillus macauensis ZFHKF-1]
Length = 263
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 55/82 (67%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315
+ D L D P+VY ++ FL +TGY +EV+G NCRFL G+DTD +++ I+E + ++
Sbjct: 28 ITDASLEDNPIVYVNEGFLTMTGYSEDEVLGLNCRFLQGIDTDRSIVATIREKLLKKERI 87
Query: 316 TVRILNYRKDKSSFWNLLHISP 337
+V I NY+K+ + FWN L I P
Sbjct: 88 SVTIKNYKKNGTFFWNELTIDP 109
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 70/123 (56%), Gaps = 1/123 (0%)
Query: 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRR 77
+ + A+D ITD S+ +PIV+ + GFL M+G+S E++G N R QG T+R
Sbjct: 13 ILLERAMDYSRVGIAITDASLEDNPIVYVNEGFLTMTGYSEDEVLGLNCRFLQGIDTDRS 72
Query: 78 TIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ IRE + ++ I V + NYKK+GT FW + F +E+ R +F+ VQ I +++
Sbjct: 73 IVATIREKLLKKERISVTIKNYKKNGTFFWNELTIDPFFMEEENRY-YFIGVQKDITNQR 131
Query: 138 HMR 140
+
Sbjct: 132 EYQ 134
>gi|302879861|ref|YP_003848425.1| PAS/PAC sensor-containing diguanylate cyclase [Gallionella
capsiferriformans ES-2]
gi|302582650|gb|ADL56661.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
capsiferriformans ES-2]
Length = 312
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 238 FISSSLYI-SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
ISS L ++ ++ + D D P++Y + F KL+GY E++G+ RFL G D
Sbjct: 6 LISSDLLAQAVDQLHDGITIADARQQDWPLIYVNAGFEKLSGYSAAELIGKPVRFLQGTD 65
Query: 297 TDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TD + ++ES+ T +C V + NYR+D + FWN L ISPIR+ +G++
Sbjct: 66 TDQAEIAVLRESLLTGVSCLVTLRNYRRDGTLFWNELSISPIRDKTGEL 114
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 72/127 (56%), Gaps = 5/127 (3%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+A+D+L D TI D P+++ + GF K+SG+S AE+IG+ R QG T++ I
Sbjct: 14 QAVDQLHDGITIADARQQDWPLIYVNAGFEKLSGYSAAELIGKPVRFLQGTDTDQAEIAV 73
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR----K 137
+RE++ V L NY++DGT FW +S + K G THFV +Q + +R +
Sbjct: 74 LRESLLTGVSCLVTLRNYRRDGTLFWNELSISPIRDKT-GELTHFVGIQKDVTARVIQEQ 132
Query: 138 HMRNSGM 144
++R S +
Sbjct: 133 NLRQSNL 139
>gi|223997956|ref|XP_002288651.1| hypothetical protein THAPSDRAFT_261631 [Thalassiosira pseudonana
CCMP1335]
gi|220975759|gb|EED94087.1| hypothetical protein THAPSDRAFT_261631 [Thalassiosira pseudonana
CCMP1335]
Length = 150
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 68/124 (54%), Gaps = 12/124 (9%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
S +TDPS+ +PIV+ S GF +++G+S ++IGRN R QGP T R + +I A++
Sbjct: 15 SLCVTDPSLVDNPIVYVSNGFCQLTGYSYDDVIGRNCRFLQGPETRREDVDKIVVAVKGG 74
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSED 149
VNLLNYKKDGT F F ++ + ++F+ +Q + + ED
Sbjct: 75 VECSVNLLNYKKDGTTFRNEFYLAQLRSPTQ-DISYFIGIQ-----------AAVDVHED 122
Query: 150 GGGS 153
GG S
Sbjct: 123 GGDS 126
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 60/93 (64%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
S + DP L D P+VY S+ F +LTGY ++V+G+NCRFL G +T + +I +++
Sbjct: 15 SLCVTDPSLVDNPIVYVSNGFCQLTGYSYDDVIGRNCRFLQGPETRREDVDKIVVAVKGG 74
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
C+V +LNY+KD ++F N +++ +R+ + +
Sbjct: 75 VECSVNLLNYKKDGTTFRNEFYLAQLRSPTQDI 107
>gi|452846862|gb|EME48794.1| hypothetical protein DOTSEDRAFT_40078 [Dothistroma septosporum
NZE10]
Length = 658
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 80/150 (53%), Gaps = 6/150 (4%)
Query: 199 LEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPG--MGFISSSLYISLGRIKQSFVL 256
E R A+D + L Y LT RLV +L G + L + + + + +
Sbjct: 226 FESRSKKIAVDLVEEALPAY--LTHRLVSLVTDTLVKEITGNSAPLLTELIPSLAEVYCI 283
Query: 257 IDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI-QTEQAC 315
DP LPD P+VYAS+ F T Y + V+G+NCRFL G T T + ++ E + + E++C
Sbjct: 284 TDPSLPDNPIVYASEEFYNTTQYGQEYVIGRNCRFLQGPQTSTAAVRRLIECLSRGEESC 343
Query: 316 TVRILNYRKDKSSFWNLLHISPIRNASGKV 345
ILNYR+D S F NLL ++P+ + G V
Sbjct: 344 ET-ILNYRRDGSPFMNLLMLAPMYDNKGTV 372
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 121/271 (44%), Gaps = 33/271 (12%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
E + L + + ITDPS+ +PIV+AS F + + + +IGRN R QGP+T+ +
Sbjct: 272 ELIPSLAEVYCITDPSLPDNPIVYASEEFYNTTQYGQEYVIGRNCRFLQGPQTSTAAVRR 331
Query: 82 IREAI-REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140
+ E + R E E +LNY++DG+PF L ++ ++ + G +F+ Q+ +
Sbjct: 332 LIECLSRGEESCET-ILNYRRDGSPFMNLLMLAPMYDNK-GTVRYFLGCQIDVSQLLQGG 389
Query: 141 NSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDD--------TGLEIED 192
S+++ R+R +G + L DL + L D D G I
Sbjct: 390 RGLESFAQLLAQDRIRS-SYGDNQHRSPKQVLSDLGQFLTEDEADIVKDRVAPPGSVIPQ 448
Query: 193 SCE--ASDLEKRKAATAIDNIL---SVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISL 247
+ E AS + R+A T ++ +QL G LPG
Sbjct: 449 TPESVASSVGPRRAGTRSKRVVLGTDEPAKDAQLWPSATLGHSGRLPG------------ 496
Query: 248 GRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278
+ QS++L+ P+ P + + + S A L++ G
Sbjct: 497 --VYQSYLLVRPY-PSLRITFTSPA-LRIPG 523
>gi|299115890|emb|CBN75899.1| n/a (Partial) [Ectocarpus siliculosus]
Length = 261
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 54/81 (66%), Gaps = 2/81 (2%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+F +T+PS++ +PIVFAS GF K++G++ E G R QGP T+R++I +R+AI
Sbjct: 121 NFVVTEPSLADNPIVFASDGFFKLTGYTSKE--GATARFLQGPDTDRKSIATLRQAITRG 178
Query: 90 RPIEVNLLNYKKDGTPFWMLF 110
+ V LLNYK DGT FW F
Sbjct: 179 EDVSVCLLNYKADGTTFWNQF 199
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 63/104 (60%), Gaps = 2/104 (1%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L S+ +Q+FV+ +P L D P+V+ASD F KLTGY E G RFL G DTD +
Sbjct: 111 LMKSIEMAQQNFVVTEPSLADNPIVFASDGFFKLTGYTSKE--GATARFLQGPDTDRKSI 168
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
++++I + +V +LNY+ D ++FWN ++ +R+ +++
Sbjct: 169 ATLRQAITRGEDVSVCLLNYKADGTTFWNQFFVAALRDDQHRIV 212
>gi|448407059|ref|ZP_21573486.1| PAS sensor protein [Halosimplex carlsbadense 2-9-1]
gi|445676272|gb|ELZ28795.1| PAS sensor protein [Halosimplex carlsbadense 2-9-1]
Length = 1794
Score = 85.1 bits (209), Expect = 5e-14, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 54/84 (64%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILN 321
PD P+V +D F LTGY+ +E +G+NCRFL G DTD + +++ ++ E TV + N
Sbjct: 121 PDEPLVSVNDRFEALTGYEESECLGRNCRFLQGEDTDEEAVARLRRAVDDEAETTVELRN 180
Query: 322 YRKDKSSFWNLLHISPIRNASGKV 345
YR D + FWN + ++P+ N G+V
Sbjct: 181 YRADGTEFWNRVRVAPVENDEGEV 204
Score = 69.7 bits (169), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
++ P T+ D + P+V + F ++G+ +E +GRN R QG T+ + +R
Sbjct: 106 IESAPVGITVADVTEPDEPLVSVNDRFEALTGYEESECLGRNCRFLQGEDTDEEAVARLR 165
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
A+ +E V L NY+ DGT FW +++ V ++G TH+V Q + R
Sbjct: 166 RAVDDEAETTVELRNYRADGTEFWNRVRVAPV-ENDEGEVTHYVGFQEDVTER 217
>gi|399546031|ref|YP_006559339.1| two-component response regulator [Marinobacter sp. BSs20148]
gi|399161363|gb|AFP31926.1| Two-component response regulator [Marinobacter sp. BSs20148]
Length = 555
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 63/110 (57%), Gaps = 1/110 (0%)
Query: 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR 87
P+ + D P+V+A+ F +++G++ +EI+G + + G T+ + I +R
Sbjct: 310 PNGIVMADARHPEMPMVYANPAFSEITGYTHSEIVGHSWHVLHGENTSPEAVEAIERGLR 369
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ I V L+NY+KDGTPFW ++S VFG +D R THF+ Q + +K
Sbjct: 370 HQTEINVELINYRKDGTPFWNHLRVSPVFG-DDSRCTHFIGTQQDVTRQK 418
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 53/85 (62%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ D P+MPMVYA+ AF ++TGY +E+VG + L+G +T + I+ ++ +
Sbjct: 313 IVMADARHPEMPMVYANPAFSEITGYTHSEIVGHSWHVLHGENTSPEAVEAIERGLRHQT 372
Query: 314 ACTVRILNYRKDKSSFWNLLHISPI 338
V ++NYRKD + FWN L +SP+
Sbjct: 373 EINVELINYRKDGTPFWNHLRVSPV 397
>gi|448356550|ref|ZP_21545283.1| multi-sensor signal transduction histidine kinase [Natrialba
chahannaoensis JCM 10990]
gi|445653583|gb|ELZ06454.1| multi-sensor signal transduction histidine kinase [Natrialba
chahannaoensis JCM 10990]
Length = 478
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P +TD S+ +PIV+A+ F ++G+ AE++GRN R QG RT + + +
Sbjct: 144 AMDEAPVGIVLTDSSLPDNPIVYANEEFYDLTGYPAAEVLGRNCRFLQGERTEQEPVDRM 203
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R AI PI + NY+ DGT FW ++ + +D +FV Q I RK
Sbjct: 204 RTAIEAREPITTEVRNYRLDGTMFWNEVTIAPI---DDSETPYFVGFQHNITRRK 255
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 56/89 (62%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
VL D LPD P+VYA++ F LTGY EV+G+NCRFL G T+ + +++ +I+ +
Sbjct: 152 IVLTDSSLPDNPIVYANEEFYDLTGYPAAEVLGRNCRFLQGERTEQEPVDRMRTAIEARE 211
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNAS 342
T + NYR D + FWN + I+PI ++
Sbjct: 212 PITTEVRNYRLDGTMFWNEVTIAPIDDSE 240
>gi|448354656|ref|ZP_21543411.1| multi-sensor signal transduction histidine kinase [Natrialba
hulunbeirensis JCM 10989]
gi|445636987|gb|ELY90143.1| multi-sensor signal transduction histidine kinase [Natrialba
hulunbeirensis JCM 10989]
Length = 478
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 55/85 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
VL D LPD P+VYA++ F LTGY EV+GQNCR L G T+ + +++ +I+ +
Sbjct: 152 IVLTDSSLPDNPIVYANEKFYDLTGYPAAEVLGQNCRLLQGERTEQEPVDRMRAAIEARE 211
Query: 314 ACTVRILNYRKDKSSFWNLLHISPI 338
+ T + NYR+D + FWN + I+PI
Sbjct: 212 SITAEVRNYRRDGTMFWNEVTIAPI 236
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P +TD S+ +PIV+A+ F ++G+ AE++G+N R+ QG RT + + +
Sbjct: 144 AMDEAPVGIVLTDSSLPDNPIVYANEKFYDLTGYPAAEVLGQNCRLLQGERTEQEPVDRM 203
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R AI I + NY++DGT FW ++ + G E +FV Q RK
Sbjct: 204 RAAIEARESITAEVRNYRRDGTMFWNEVTIAPIDGSE---TPYFVGFQHETTRRK 255
>gi|340780976|ref|YP_004747583.1| PAS/PAC and GAF sensor-containing diguanylate
cyclase/phosphodiesterase [Acidithiobacillus caldus
SM-1]
gi|340555129|gb|AEK56883.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Acidithiobacillus caldus SM-1]
Length = 913
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 63/100 (63%), Gaps = 3/100 (3%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L I + VL D + +VYA+ AFL+L+GY+ +++G+NCRFL G DTD +
Sbjct: 133 ALRAIDEGVVLTDA---EQRVVYANPAFLRLSGYELADILGKNCRFLQGPDTDPATRQSL 189
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+++ + ILNYR+D + FWN L+ISP+R+A G +
Sbjct: 190 HDALAEGRVFHGDILNYRRDGTPFWNALNISPVRDAQGHI 229
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 74/133 (55%), Gaps = 8/133 (6%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL + + +TD + +V+A+ FL++SG+ A+I+G+N R QGP T+ T +
Sbjct: 133 ALRAIDEGVVLTD---AEQRVVYANPAFLRLSGYELADILGKNCRFLQGPDTDPATRQSL 189
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV----SRKH 138
+A+ E R ++LNY++DGTPFW +S V + G THFV+VQ + + +
Sbjct: 190 HDALAEGRVFHGDILNYRRDGTPFWNALNISPVRDAQ-GHITHFVSVQRDVTLSRRTEQE 248
Query: 139 MRNSGMSYSEDGG 151
+R S ++ G
Sbjct: 249 LRLSAQAFETQEG 261
>gi|345562874|gb|EGX45882.1| hypothetical protein AOL_s00112g71 [Arthrobotrys oligospora ATCC
24927]
Length = 892
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 72/127 (56%), Gaps = 1/127 (0%)
Query: 8 IEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGR 67
I++ ++ E+ +EL + F +TDP +PIVFAS F + + + + + GRN R
Sbjct: 441 IQKKITGSEVRYLEESSNELGEVFCLTDPQRHDNPIVFASEEFHRATQYPISYVSGRNCR 500
Query: 68 MFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
QGP+T R ++ +R+A+R+ I LNYK+DGTPF L ++ + + G+ +F+
Sbjct: 501 FLQGPKTQRHSVARLRDAVRQGHEITECFLNYKRDGTPFLNLVMVAPLLDSK-GQVRYFI 559
Query: 128 AVQVPIV 134
Q+ +
Sbjct: 560 GAQIDVT 566
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 59/100 (59%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
S + + F L DP D P+V+AS+ F + T Y + V G+NCRFL G T + ++
Sbjct: 456 SSNELGEVFCLTDPQRHDNPIVFASEEFHRATQYPISYVSGRNCRFLQGPKTQRHSVARL 515
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+++++ T LNY++D + F NL+ ++P+ ++ G+V
Sbjct: 516 RDAVRQGHEITECFLNYKRDGTPFLNLVMVAPLLDSKGQV 555
>gi|119493187|ref|ZP_01624062.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
domains) with PAS/PAC sensors [Lyngbya sp. PCC 8106]
gi|119452752|gb|EAW33929.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
domains) with PAS/PAC sensors [Lyngbya sp. PCC 8106]
Length = 1090
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM 68
+QS + Y + A++ + ITD + + HPI++ + GF +++G+S+ E+I +N R
Sbjct: 384 QQSTESLYLM--ERAINASSNGIIITDATETDHPIIYVNAGFERITGYSKEEVIEQNCRF 441
Query: 69 FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVA 128
QGP+T+ + +R A+ + R V + NY+KDG FW +++ VF + G THF+
Sbjct: 442 LQGPQTDSSLVERLRTALLQGRECRVVIQNYRKDGRLFWNDLQIAPVFN-DRGHLTHFIG 500
Query: 129 VQVPIVSR 136
VQ I R
Sbjct: 501 VQNDITER 508
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
Query: 240 SSSLYISLGRIKQS---FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
+ SLY+ I S ++ D D P++Y + F ++TGY + EV+ QNCRFL G
Sbjct: 387 TESLYLMERAINASSNGIIITDATETDHPIIYVNAGFERITGYSKEEVIEQNCRFLQGPQ 446
Query: 297 TDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TD++++ +++ ++ + C V I NYRKD FWN L I+P+ N G +
Sbjct: 447 TDSSLVERLRTALLQGRECRVVIQNYRKDGRLFWNDLQIAPVFNDRGHL 495
>gi|148753|gb|AAA72719.1| bacterio-opsin activator [Halobacterium salinarum]
Length = 674
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+ALDE P TI+D + PI++ + F ++G+S E++G N R QGP+TN
Sbjct: 161 EQALDEAPIGITISDATDPEEPIIYINDSFEDITGYSPDEVVGANHRFLQGPKTNEEPRG 220
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
AI E+ +V L NY++DG+ FW +S ++ EDG +H+V Q+ + R
Sbjct: 221 GFWTAITEDHDTQVVLRNYRRDGSLFWNQVDISPIY-DEDGTVSHYVGFQMDVSER 275
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILN 321
P+ P++Y +D+F +TGY +EVVG N RFL G T+ +I + V + N
Sbjct: 179 PEEPIIYINDSFEDITGYSPDEVVGANHRFLQGPKTNEEPRGGFWTAITEDHDTQVVLRN 238
Query: 322 YRKDKSSFWNLLHISPIRNASGKV 345
YR+D S FWN + ISPI + G V
Sbjct: 239 YRRDGSLFWNQVDISPIYDEDGTV 262
>gi|255019342|ref|ZP_05291462.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Acidithiobacillus caldus ATCC 51756]
gi|254971214|gb|EET28656.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Acidithiobacillus caldus ATCC 51756]
Length = 913
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 55/80 (68%)
Query: 266 MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKD 325
+VYA+ AFL+L+GY+ E++G+NCRFL G DTD + +++ + ILNYR+D
Sbjct: 150 VVYANPAFLRLSGYELAEILGKNCRFLQGPDTDPATRQSLHDALAEGRVFHGDILNYRQD 209
Query: 326 KSSFWNLLHISPIRNASGKV 345
+ FWN L+ISP+R+A G +
Sbjct: 210 GTPFWNALNISPVRDAQGHI 229
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 66/113 (58%), Gaps = 5/113 (4%)
Query: 43 IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKD 102
+V+A+ FL++SG+ AEI+G+N R QGP T+ T + +A+ E R ++LNY++D
Sbjct: 150 VVYANPAFLRLSGYELAEILGKNCRFLQGPDTDPATRQSLHDALAEGRVFHGDILNYRQD 209
Query: 103 GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV----SRKHMRNSGMSYSEDGG 151
GTPFW +S V + G THFV+VQ + + + +R S ++ G
Sbjct: 210 GTPFWNALNISPVRDAQ-GHITHFVSVQRDVTLSRRTEQELRLSAQAFETQEG 261
>gi|424878664|ref|ZP_18302302.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WU95]
gi|392520174|gb|EIW44904.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WU95]
Length = 342
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 60/102 (58%)
Query: 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQ 304
I+ R + V+ D D +V A+ AFL+LTGY+ EV+G NCRFL G T +
Sbjct: 31 IAFERTRMPMVVTDARKSDQTIVLANKAFLELTGYEAEEVLGHNCRFLQGPATSPIAAAE 90
Query: 305 IKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
I+ +I E+ ++ ILNY+K FWN LH+SP+ G++L
Sbjct: 91 IRAAIAGEREISIEILNYKKSGEQFWNRLHLSPVHGDDGRIL 132
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
+TD S IV A++ FL+++G+ E++G N R QGP T+ EIR AI ER
Sbjct: 40 MVVTDARKSDQTIVLANKAFLELTGYEAEEVLGHNCRFLQGPATSPIAAAEIRAAIAGER 99
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
I + +LNYKK G FW +S V G +DGR +F Q+
Sbjct: 100 EISIEILNYKKSGEQFWNRLHLSPVHG-DDGRILYFFGSQI 139
>gi|308807791|ref|XP_003081206.1| PAS (ISS) [Ostreococcus tauri]
gi|116059668|emb|CAL55375.1| PAS (ISS) [Ostreococcus tauri]
Length = 933
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 59/102 (57%)
Query: 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQ 304
+++ + + D PD P++YA+ F +TGY E +G+NCRFL G TD L +
Sbjct: 103 LAMDSCAEGITIADFSKPDQPLIYANIGFESMTGYSVQETLGKNCRFLQGPGTDLKELGK 162
Query: 305 IKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
++ +I +ACTV + NY+K F N L ++PIR+ G V+
Sbjct: 163 VRAAITKGEACTVVLKNYKKSGEEFMNQLSLTPIRDGEGNVM 204
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D + TI D S P+++A+ GF M+G+S E +G+N R QGP T+ + + ++
Sbjct: 104 AMDSCAEGITIADFSKPDQPLIYANIGFESMTGYSVQETLGKNCRFLQGPGTDLKELGKV 163
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
R AI + V L NYKK G F ++ + E G ++V +Q I
Sbjct: 164 RAAITKGEACTVVLKNYKKSGEEFMNQLSLTPIRDGE-GNVMYYVGIQSDIT 214
>gi|75906870|ref|YP_321166.1| multi-sensor signal transduction histidine kinase [Anabaena
variabilis ATCC 29413]
gi|75700595|gb|ABA20271.1| multi-sensor signal transduction histidine kinase [Anabaena
variabilis ATCC 29413]
Length = 1741
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 58/92 (63%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ D P+ P++Y + AF ++TGY +EV+GQN R D D L ++ ++Q +
Sbjct: 1265 IIIADASTPNRPIIYVNPAFERMTGYSSDEVIGQNFRLFQSADIDQLGLRELSTAMQAGK 1324
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
ACTV + NYRKD S WN L+ISP+ + +G++
Sbjct: 1325 ACTVVLRNYRKDGSLLWNELNISPVYDQTGQL 1356
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D + I D S PI++ + F +M+G+S E+IG+N R+FQ ++ + E+
Sbjct: 1257 AIDASSNGIIIADASTPNRPIIYVNPAFERMTGYSSDEVIGQNFRLFQSADIDQLGLREL 1316
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
A++ + V L NY+KDG+ W +S V+ + G+ TH++ +Q I RK +
Sbjct: 1317 STAMQAGKACTVVLRNYRKDGSLLWNELNISPVY-DQTGQLTHYIGIQTDITERKQAETA 1375
>gi|392562222|gb|EIW55403.1| hypothetical protein TRAVEDRAFT_66578 [Trametes versicolor
FP-101664 SS1]
Length = 962
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 63/108 (58%), Gaps = 13/108 (12%)
Query: 245 ISLGRI--KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV------- 295
ISLG + SFV+ D D P+VYAS F KLTGYD +EVVG+NCRFL
Sbjct: 162 ISLGPVDLSCSFVVTDTRRFDSPIVYASPTFFKLTGYDEHEVVGRNCRFLQSPGGHLQRG 221
Query: 296 ----DTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIR 339
T + ++++I ++ C V I+NYRKD S+F N++ + PIR
Sbjct: 222 QERHHTSQDAVAHLRKNIIADKECQVSIINYRKDGSAFINMVSVIPIR 269
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 11/88 (12%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP-----------RTNRRT 78
SF +TD PIV+AS F K++G+ E++GRN R Q P T++
Sbjct: 172 SFVVTDTRRFDSPIVYASPTFFKLTGYDEHEVVGRNCRFLQSPGGHLQRGQERHHTSQDA 231
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPF 106
+ +R+ I ++ +V+++NY+KDG+ F
Sbjct: 232 VAHLRKNIIADKECQVSIINYRKDGSAF 259
>gi|188579586|ref|YP_001923031.1| signal transduction histidine kinase [Methylobacterium populi
BJ001]
gi|179343084|gb|ACB78496.1| signal transduction histidine kinase [Methylobacterium populi
BJ001]
Length = 901
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 65/103 (63%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L+ ++ + +L DP+ D P+V+ + AFL LTGY +EVVG+NCRFL G DT+ +
Sbjct: 43 LFSAVDKTGLPMILTDPNQDDDPIVFTNRAFLDLTGYGVDEVVGRNCRFLQGPDTEHDHV 102
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+I+ +++ + T+ I N+R+D + F N L I P+ + G++
Sbjct: 103 DEIRAALRDNRDLTIEITNHRRDGTPFVNALFIGPVFDGEGRL 145
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D+ +TDP+ PIVF +R FL ++G+ E++GRN R QGP T + EI
Sbjct: 46 AVDKTGLPMILTDPNQDDDPIVFTNRAFLDLTGYGVDEVVGRNCRFLQGPDTEHDHVDEI 105
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140
R A+R+ R + + + N+++DGTPF + VF E GR + Q+ + R
Sbjct: 106 RAALRDNRDLTIEITNHRRDGTPFVNALFIGPVFDGE-GRLRYRFGSQIDVTEAHRNR 162
>gi|304321705|ref|YP_003855348.1| sensory box histidine kinase [Parvularcula bermudensis HTCC2503]
gi|303300607|gb|ADM10206.1| sensory box histidine kinase [Parvularcula bermudensis HTCC2503]
Length = 361
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 75/136 (55%), Gaps = 9/136 (6%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A + P +F +T+P + +PIV+ +R F ++G++ +GRN R QGP T++ + ++
Sbjct: 33 AFERFPIAFVLTNPGLEDNPIVYVNRAFENLTGYAAEVSLGRNCRFLQGPDTDKEAVKKM 92
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
RE ++ P+E LLNY+ DG PF ++ +F + G+ + F+ +Q R S
Sbjct: 93 REHLQRAAPVETVLLNYRSDGKPFRNYLRIEPIF-DDSGQLSCFLGLQ--------QRVS 143
Query: 143 GMSYSEDGGGSRLREI 158
+ S D +L+EI
Sbjct: 144 DATTSPDAISVQLKEI 159
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 56/97 (57%)
Query: 249 RIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKES 308
R +FVL +P L D P+VY + AF LTGY +G+NCRFL G DTD + +++E
Sbjct: 36 RFPIAFVLTNPGLEDNPIVYVNRAFENLTGYAAEVSLGRNCRFLQGPDTDKEAVKKMREH 95
Query: 309 IQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+Q +LNYR D F N L I PI + SG++
Sbjct: 96 LQRAAPVETVLLNYRSDGKPFRNYLRIEPIFDDSGQL 132
>gi|407918006|gb|EKG11304.1| PAS domain-containing protein [Macrophomina phaseolina MS6]
Length = 693
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 60/96 (62%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+ + + L DP LPD P+VYAS+ F T Y R+ V+G+NCRFL G T + +I+E+I
Sbjct: 214 LAEVYCLTDPSLPDNPIVYASEEFHLATQYGRDYVIGRNCRFLQGPKTAPDSVRRIREAI 273
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
++ Q +LNYR+D S F NL ++P+ + G V
Sbjct: 274 RSGQEICEILLNYRRDGSPFINLCLVAPLYDNKGNV 309
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 66/109 (60%), Gaps = 1/109 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L + + +TDPS+ +PIV+AS F + + R +IGRN R QGP+T ++ IREAI
Sbjct: 214 LAEVYCLTDPSLPDNPIVYASEEFHLATQYGRDYVIGRNCRFLQGPKTAPDSVRRIREAI 273
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
R + I LLNY++DG+PF L ++ ++ + G +F+ Q+ + +
Sbjct: 274 RSGQEICEILLNYRRDGSPFINLCLVAPLYDNK-GNVRYFIGCQIDVTN 321
>gi|237799947|ref|ZP_04588408.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
syringae pv. oryzae str. 1_6]
gi|331022802|gb|EGI02859.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
syringae pv. oryzae str. 1_6]
Length = 747
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 72/117 (61%), Gaps = 6/117 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ AE+IG+ R+ Q T+R T+ IREA
Sbjct: 169 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEAEVIGQTPRILQCEDTSRETLDVIREA 228
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRKHMRN 141
+ RP+EV L+N +KDG+ FW+ ++S+V E G TH+V+VQ I RK ++
Sbjct: 229 LTHWRPVEVELVNTRKDGSQFWV--ELSIVPVANEKGWFTHWVSVQRDITERKESQH 283
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%)
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320
LP +VY + AFL +TG+ EV+GQ R L DT L I+E++ + V ++
Sbjct: 181 LPGPRIVYCNPAFLAITGFTEAEVIGQTPRILQCEDTSRETLDVIREALTHWRPVEVELV 240
Query: 321 NYRKDKSSFWNLLHISPIRNASG 343
N RKD S FW L I P+ N G
Sbjct: 241 NTRKDGSQFWVELSIVPVANEKG 263
>gi|427725026|ref|YP_007072303.1| PAS/PAC and GAF sensor-containing diguanylate
cyclase/phosphodiesterase [Leptolyngbya sp. PCC 7376]
gi|427356746|gb|AFY39469.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Leptolyngbya sp. PCC 7376]
Length = 1052
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 77/133 (57%), Gaps = 5/133 (3%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+H +++ + ITDP S +PI++A++GF +SG++ +EI+G+N +G +T + ++
Sbjct: 366 LHHSINAIDQGVIITDPRQSKNPIIYANQGFENISGYNASEILGKNCNFLRGEQTEKASL 425
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK-- 137
++R+A+ + +P V L NY+K G FW ++ V DG THF+ +Q I ++
Sbjct: 426 NKLRDAVLQGKPCHVILRNYRKSGDMFWNDLQIFPV-QDTDGTLTHFIGIQKDITEQRAI 484
Query: 138 --HMRNSGMSYSE 148
H+ S + +
Sbjct: 485 AEHLYESDFQFRQ 497
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 15/139 (10%)
Query: 207 AIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPM 266
AI NI++ H Q T + + L+ S+ I Q ++ DP P+
Sbjct: 345 AIANIIATAVHREQQTRNM---------------NLLHHSINAIDQGVIITDPRQSKNPI 389
Query: 267 VYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDK 326
+YA+ F ++GY+ +E++G+NC FL G T+ L ++++++ + C V + NYRK
Sbjct: 390 IYANQGFENISGYNASEILGKNCNFLRGEQTEKASLNKLRDAVLQGKPCHVILRNYRKSG 449
Query: 327 SSFWNLLHISPIRNASGKV 345
FWN L I P+++ G +
Sbjct: 450 DMFWNDLQIFPVQDTDGTL 468
>gi|304393244|ref|ZP_07375172.1| sensory box histidine kinase [Ahrensia sp. R2A130]
gi|303294251|gb|EFL88623.1| sensory box histidine kinase [Ahrensia sp. R2A130]
Length = 325
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 61/99 (61%), Gaps = 1/99 (1%)
Query: 32 TITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91
TI+DP++ P+VF +R F K +G+ + IG+N R QG T+ + IRE IR +R
Sbjct: 15 TISDPNLPDSPLVFVNRAFEKTTGYMASYAIGKNCRFLQGEGTSPEHVTLIREGIRHQRD 74
Query: 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
+EV L NY+ +G FW +S +F +DG+ T+++ VQ
Sbjct: 75 VEVVLKNYRANGRSFWNQLSLSPIF-DDDGKLTYYIGVQ 112
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 55/88 (62%)
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTV 317
DP+LPD P+V+ + AF K TGY + +G+NCRFL G T + I+E I+ ++ V
Sbjct: 18 DPNLPDSPLVFVNRAFEKTTGYMASYAIGKNCRFLQGEGTSPEHVTLIREGIRHQRDVEV 77
Query: 318 RILNYRKDKSSFWNLLHISPIRNASGKV 345
+ NYR + SFWN L +SPI + GK+
Sbjct: 78 VLKNYRANGRSFWNQLSLSPIFDDDGKL 105
>gi|424066358|ref|ZP_17803824.1| PAS:GGDEF domain-containing protein domain-containing protein
[Pseudomonas syringae pv. avellanae str. ISPaVe013]
gi|408002421|gb|EKG42678.1| PAS:GGDEF domain-containing protein domain-containing protein
[Pseudomonas syringae pv. avellanae str. ISPaVe013]
Length = 747
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 169 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRATLDVIREA 228
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ RP+EV LLN +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 229 LSHWRPVEVELLNTRKDGSQFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 279
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%)
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320
LP +VY + AFL +TG+ EV+G+ R L DT L I+E++ + V +L
Sbjct: 181 LPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRATLDVIREALSHWRPVEVELL 240
Query: 321 NYRKDKSSFWNLLHISPIRNASG 343
N RKD S FW L I P+ N G
Sbjct: 241 NTRKDGSQFWVELSIVPVANEKG 263
>gi|381182903|ref|ZP_09891681.1| blue-light photoreceptor [Listeriaceae bacterium TTU M1-001]
gi|380317210|gb|EIA20551.1| blue-light photoreceptor [Listeriaceae bacterium TTU M1-001]
Length = 259
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 56/88 (63%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+++AL P I DP+I G P VF + F K++G+S+ EIIG+NG QGP TN ++
Sbjct: 11 MYKALRLSPSPVIIADPTIEGTPFVFVNHSFEKLTGYSKDEIIGKNGSFLQGPDTNVESL 70
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFW 107
+I +AIR E+ I L NYKK+G F+
Sbjct: 71 KQISDAIRNEKSITQILKNYKKNGESFY 98
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 239 ISSSLYISLGRIKQSFVLI-DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
IS+++ R+ S V+I DP + P V+ + +F KLTGY ++E++G+N FL G DT
Sbjct: 6 ISANIMYKALRLSPSPVIIADPTIEGTPFVFVNHSFEKLTGYSKDEIIGKNGSFLQGPDT 65
Query: 298 DTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
+ L QI ++I+ E++ T + NY+K+ SF+N L I PI
Sbjct: 66 NVESLKQISDAIRNEKSITQILKNYKKNGESFYNELTIQPI 106
>gi|424071007|ref|ZP_17808435.1| sensor y box/GGDEF domain-containing protein domain/EAL domain
protein [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|407999749|gb|EKG40127.1| sensor y box/GGDEF domain-containing protein domain/EAL domain
protein [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
Length = 747
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 169 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRATLDVIREA 228
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ RP+EV LLN +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 229 LSHWRPVEVELLNTRKDGSQFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 279
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%)
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320
LP +VY + AFL +TG+ EV+G+ R L DT L I+E++ + V +L
Sbjct: 181 LPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRATLDVIREALSHWRPVEVELL 240
Query: 321 NYRKDKSSFWNLLHISPIRNASG 343
N RKD S FW L I P+ N G
Sbjct: 241 NTRKDGSQFWVELSIVPVANEKG 263
>gi|378729746|gb|EHY56205.1| non-specific serine/threonine protein kinase [Exophiala
dermatitidis NIH/UT8656]
Length = 1002
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 60/99 (60%)
Query: 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIK 306
+G + + F L DP+ D P++YAS F + TGY ++V+G+NCRFL G T + +++
Sbjct: 312 VGGLSEVFCLTDPNQEDNPIIYASAEFYRFTGYGPDDVIGRNCRFLQGPRTKRESVARLR 371
Query: 307 ESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
SI Q + +LNYR+D F NLL I+P+ + G V
Sbjct: 372 RSIVEGQGISETLLNYRRDGRPFINLLMIAPLHDDKGNV 410
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R T + + + L + F +TDP+ +PI++AS F + +G+ ++IGRN R QGPRT
Sbjct: 303 RQTPLLGDLVGGLSEVFCLTDPNQEDNPIIYASAEFYRFTGYGPDDVIGRNCRFLQGPRT 362
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
R ++ +R +I E + I LLNY++DG PF L M + G + + Q +
Sbjct: 363 KRESVARLRRSIVEGQGISETLLNYRRDGRPFINLL-MIAPLHDDKGNVKYHIGAQADVT 421
>gi|310801129|gb|EFQ36022.1| hypothetical protein GLRG_11166 [Glomerella graminicola M1.001]
Length = 671
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 62/96 (64%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+ ++F ++D PD + ASDAF+ +TGY R E + +NCRFL G TD + + ++++S+
Sbjct: 264 LAEAFCIVDVLTPDQTITAASDAFVSVTGYPRPEALSRNCRFLQGTLTDKSTVKRVRDSM 323
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
++ ILNY +D + +WNLL P+ +++GK+
Sbjct: 324 LRQEESLELILNYTRDGTPYWNLLFTCPLLDSAGKI 359
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 63/111 (56%), Gaps = 5/111 (4%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A L ++F I D I AS F+ ++G+ R E + RN R QG T++ T+ +
Sbjct: 260 AYPGLAEAFCIVDVLTPDQTITAASDAFVSVTGYPRPEALSRNCRFLQGTLTDKSTVKRV 319
Query: 83 REA-IREERPIEVNLLNYKKDGTPFW-MLFKMSLVFGKEDGRATHFVAVQV 131
R++ +R+E +E+ +LNY +DGTP+W +LF L+ G+ +++ Q+
Sbjct: 320 RDSMLRQEESLEL-ILNYTRDGTPYWNLLFTCPLL--DSAGKIRYYLGGQI 367
>gi|347754168|ref|YP_004861732.1| PAS domain S-box protein [Candidatus Chloracidobacterium
thermophilum B]
gi|347586686|gb|AEP11216.1| PAS domain S-box [Candidatus Chloracidobacterium thermophilum B]
Length = 736
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 4/119 (3%)
Query: 24 LDELPDSFTITDPSISGHP---IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
LD + D+ +T+ P I++ +R F +M+G++ E IG+ RM QGP T+
Sbjct: 219 LDNIHDAVLVTEAEPIDPPGPRILYVNRAFEQMTGYTALEAIGQTPRMLQGPETSAEARA 278
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
IR+A++ +PI + L+NY+KDG PFW + + E G TH+VAVQ + R+ +
Sbjct: 279 RIRQALQNWQPITIELINYRKDGHPFWSELAI-VPIADETGYYTHWVAVQRDVTERRRI 336
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 257 IDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACT 316
IDP P ++Y + AF ++TGY E +GQ R L G +T +I++++Q Q T
Sbjct: 234 IDP--PGPRILYVNRAFEQMTGYTALEAIGQTPRMLQGPETSAEARARIRQALQNWQPIT 291
Query: 317 VRILNYRKDKSSFWNLLHISPIRNASG 343
+ ++NYRKD FW+ L I PI + +G
Sbjct: 292 IELINYRKDGHPFWSELAIVPIADETG 318
>gi|66044410|ref|YP_234251.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
gi|63255117|gb|AAY36213.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
Length = 748
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 170 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRATLDIIREA 229
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ RP+EV LLN +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 230 LSHWRPVEVELLNTRKDGSQFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 280
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%)
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320
LP +VY + AFL +TG+ EV+G+ R L DT L I+E++ + V +L
Sbjct: 182 LPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRATLDIIREALSHWRPVEVELL 241
Query: 321 NYRKDKSSFWNLLHISPIRNASG 343
N RKD S FW L I P+ N G
Sbjct: 242 NTRKDGSQFWVELSIVPVANEKG 264
>gi|17228724|ref|NP_485272.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
gi|17130576|dbj|BAB73186.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
Length = 1749
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 58/92 (63%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ D P+ P++Y + AF ++TGY +EV+GQN R D D L ++ ++Q +
Sbjct: 1265 IIIADASTPNRPIIYVNPAFERMTGYSSDEVIGQNFRLFQSADIDQLGLRELSTAMQAGK 1324
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
ACTV + NYRKD S WN L+ISP+ + +G++
Sbjct: 1325 ACTVILRNYRKDGSLLWNELNISPVYDQTGQL 1356
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D + I D S PI++ + F +M+G+S E+IG+N R+FQ ++ + E+
Sbjct: 1257 AIDASSNGIIIADASTPNRPIIYVNPAFERMTGYSSDEVIGQNFRLFQSADIDQLGLREL 1316
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
A++ + V L NY+KDG+ W +S V+ + G+ TH++ +Q I RK +
Sbjct: 1317 STAMQAGKACTVILRNYRKDGSLLWNELNISPVY-DQTGQLTHYIGIQTDITERKQAETA 1375
>gi|422638481|ref|ZP_16701912.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
gi|330950876|gb|EGH51136.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
Length = 748
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 170 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEDEVIGRTPRILQCEDTSRATLDVIREA 229
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ RP+EV LLN +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 230 LSHWRPVEVELLNTRKDGSQFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 280
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%)
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320
LP +VY + AFL +TG+ +EV+G+ R L DT L I+E++ + V +L
Sbjct: 182 LPGPRIVYCNPAFLAITGFTEDEVIGRTPRILQCEDTSRATLDVIREALSHWRPVEVELL 241
Query: 321 NYRKDKSSFWNLLHISPIRNASG 343
N RKD S FW L I P+ N G
Sbjct: 242 NTRKDGSQFWVELSIVPVANEKG 264
>gi|292490507|ref|YP_003525946.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
gi|291579102|gb|ADE13559.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
Length = 149
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 58/91 (63%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315
L DP D P+VY ++AF K+TGY + E++G+NCRFL G D D + +++E+IQ
Sbjct: 29 LTDPDQEDNPLVYVNEAFEKITGYKKEEILGKNCRFLQGNDRDQEEVKRLREAIQNRVPI 88
Query: 316 TVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
V I NY+K+ F+N L ++P+ + G +L
Sbjct: 89 EVDIRNYKKNGELFYNHLAVNPVFDQDGNLL 119
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+ LD + ++TDP +P+V+ + F K++G+ + EI+G+N R QG ++ +
Sbjct: 18 QILDSCVNGVSLTDPDQEDNPLVYVNEAFEKITGYKKEEILGKNCRFLQGNDRDQEEVKR 77
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+REAI+ PIEV++ NYKK+G F+ ++ VF +DG +F+ +Q + +
Sbjct: 78 LREAIQNRVPIEVDIRNYKKNGELFYNHLAVNPVFD-QDGNLLYFLGIQYDVTKQ 131
>gi|428223286|ref|YP_007107456.1| PAS domain-containing protein [Synechococcus sp. PCC 7502]
gi|427996626|gb|AFY75321.1| PAS domain S-box [Synechococcus sp. PCC 7502]
Length = 914
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 58/92 (63%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+++D PD P++Y + +F ++TGY +EV+G NCRFL G D L I+E+++ +
Sbjct: 248 IIIVDAKQPDNPIIYINPSFERITGYKASEVIGSNCRFLQGGDRSQEGLSTIREAVKQGK 307
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+C + NYRKD + FW L +SP+ N G++
Sbjct: 308 SCYTVLRNYRKDGTLFWVELWVSPVHNEMGEL 339
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL + I D +PI++ + F +++G+ +E+IG N R QG ++ + I
Sbjct: 240 ALAASVNGIIIVDAKQPDNPIIYINPSFERITGYKASEVIGSNCRFLQGGDRSQEGLSTI 299
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
REA+++ + L NY+KDGT FW+ +S V E G T+F+ +Q I SR
Sbjct: 300 REAVKQGKSCYTVLRNYRKDGTLFWVELWVSPVHN-EMGELTNFIGIQNDITSR 352
>gi|440744379|ref|ZP_20923682.1| PAS:GGDEF protein [Pseudomonas syringae BRIP39023]
gi|440373797|gb|ELQ10540.1| PAS:GGDEF protein [Pseudomonas syringae BRIP39023]
Length = 748
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 170 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEDEVIGRTPRILQCEDTSRATLDVIREA 229
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ RP+EV LLN +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 230 LSHWRPVEVELLNTRKDGSQFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 280
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%)
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320
LP +VY + AFL +TG+ +EV+G+ R L DT L I+E++ + V +L
Sbjct: 182 LPGPRIVYCNPAFLAITGFTEDEVIGRTPRILQCEDTSRATLDVIREALSHWRPVEVELL 241
Query: 321 NYRKDKSSFWNLLHISPIRNASG 343
N RKD S FW L I P+ N G
Sbjct: 242 NTRKDGSQFWVELSIVPVANEKG 264
>gi|126657235|ref|ZP_01728401.1| regulatory components of sensory transduction system [Cyanothece
sp. CCY0110]
gi|126621506|gb|EAZ92217.1| regulatory components of sensory transduction system [Cyanothece
sp. CCY0110]
Length = 483
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 60/111 (54%)
Query: 236 MGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295
M S LY ++ ++ D D P++Y + F +TGY EV G+NCRFL G
Sbjct: 159 MPLESYFLYQAIAATNNGIIITDATTSDYPIIYVNPGFEVMTGYFFEEVKGKNCRFLQGS 218
Query: 296 DTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
D L QI+ + + C + + NYRKD S FWN L +SPI++ S K++
Sbjct: 219 DHKQPQLEQIRHCLYHGENCHITLRNYRKDGSLFWNELSLSPIKDESDKII 269
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 76/152 (50%), Gaps = 6/152 (3%)
Query: 1 MDSQLGLIE--QSFNNRYTL---WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSG 55
++ +L L+E Q F+ + L ++++A+ + ITD + S +PI++ + GF M+G
Sbjct: 142 LEPKLKLVEVSQKFHQQMPLESYFLYQAIAATNNGIIITDATTSDYPIIYVNPGFEVMTG 201
Query: 56 FSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLV 115
+ E+ G+N R QG + + +IR + + L NY+KDG+ FW +S +
Sbjct: 202 YFFEEVKGKNCRFLQGSDHKQPQLEQIRHCLYHGENCHITLRNYRKDGSLFWNELSLSPI 261
Query: 116 FGKEDGRATHFVAVQVPIVSRKHMRNSGMSYS 147
+ D + ++V VQ + +K Y
Sbjct: 262 KDESD-KIIYYVGVQTDVTDKKRANEEQQRYE 292
>gi|121716497|ref|XP_001275825.1| conserved hypothetical protein [Aspergillus clavatus NRRL 1]
gi|119403982|gb|EAW14399.1| conserved hypothetical protein [Aspergillus clavatus NRRL 1]
Length = 614
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 62/96 (64%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+ + F L DP PD P+++AS+ F + T Y + V+G+NCRFL G T+ + +I+E+I
Sbjct: 280 LAEVFCLTDPSRPDNPIIFASEEFHRTTQYGMDYVLGRNCRFLQGPKTNPNSVRRIREAI 339
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ + + LNYR+D S F NLL +P+ ++SGK+
Sbjct: 340 EAGRHHSELFLNYRRDGSPFMNLLQCAPLCDSSGKI 375
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 25 DELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84
D L + F +TDPS +PI+FAS F + + + ++GRN R QGP+TN ++ IRE
Sbjct: 278 DALAEVFCLTDPSRPDNPIIFASEEFHRTTQYGMDYVLGRNCRFLQGPKTNPNSVRRIRE 337
Query: 85 AIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
AI R LNY++DG+PF L + + G+ +F+ Q+ +
Sbjct: 338 AIEAGRHHSELFLNYRRDGSPFMNLLQCA-PLCDSSGKIRYFIGAQIDV 385
>gi|448607643|ref|ZP_21659596.1| HTR-like protein [Haloferax sulfurifontis ATCC BAA-897]
gi|445737580|gb|ELZ89112.1| HTR-like protein [Haloferax sulfurifontis ATCC BAA-897]
Length = 369
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 55/99 (55%)
Query: 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIK 306
L + IDP LPD P+VY ++AF LTGYD V G+NCRFL G +TD + +I+
Sbjct: 253 LDAVDVGIAAIDPSLPDDPVVYLNEAFETLTGYDAESVTGRNCRFLYGPETDPEAVAEIR 312
Query: 307 ESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+++ + + I Y D F N L + PIR+ G V
Sbjct: 313 AAVEAGELISTEIRTYDADGEPFRNRLDVRPIRDDDGAV 351
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
LD + DPS+ P+V+ + F ++G+ + GRN R GP T+ + EIR
Sbjct: 253 LDAVDVGIAAIDPSLPDDPVVYLNEAFETLTGYDAESVTGRNCRFLYGPETDPEAVAEIR 312
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
A+ I + Y DG PF + + +DG FV P+
Sbjct: 313 AAVEAGELISTEIRTYDADGEPFRNRLDVRPIR-DDDGAVEFFVGFHRPV 361
>gi|300115509|ref|YP_003762084.1| putative PAS/PAC sensor protein [Nitrosococcus watsonii C-113]
gi|299541446|gb|ADJ29763.1| putative PAS/PAC sensor protein [Nitrosococcus watsonii C-113]
Length = 150
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+ LD + ++TDP +P+V+ + F K++G+ + EI+G+N R+ QG ++
Sbjct: 21 QILDSCVNGVSLTDPDQEDNPLVYVNEAFEKITGYKKDEILGKNCRILQGNDKDQEGARR 80
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+REAI+++ PIEV+L NYKKDG F+ ++ +F +E G +F+ +Q + +
Sbjct: 81 VREAIQKQVPIEVDLKNYKKDGELFYNHLAINPIFDQE-GHLIYFLGIQYDVTKQ 134
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 58/91 (63%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315
L DP D P+VY ++AF K+TGY ++E++G+NCR L G D D +++E+IQ +
Sbjct: 32 LTDPDQEDNPLVYVNEAFEKITGYKKDEILGKNCRILQGNDKDQEGARRVREAIQKQVPI 91
Query: 316 TVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
V + NY+KD F+N L I+PI + G ++
Sbjct: 92 EVDLKNYKKDGELFYNHLAINPIFDQEGHLI 122
>gi|443309980|ref|ZP_21039653.1| PAS domain S-box [Synechocystis sp. PCC 7509]
gi|442779979|gb|ELR90199.1| PAS domain S-box [Synechocystis sp. PCC 7509]
Length = 546
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 70/114 (61%), Gaps = 4/114 (3%)
Query: 29 DSFTITDPSISGHP---IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ ITD HP IV+ ++ F KM+G+S +++G+ R+ QG +T++ + +IR A
Sbjct: 192 DAILITDAEPIEHPGPQIVYVNQAFTKMTGYSLEDVLGKTPRLLQGSKTDQDALDKIRVA 251
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
++ +P+ V L+NY KDG+ FW+ ++ V + G TH+V+VQ I RK +
Sbjct: 252 LKAWQPVRVELINYCKDGSEFWVELSITPV-TDQKGWYTHWVSVQRDITERKQI 304
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILN 321
P +VY + AF K+TGY +V+G+ R L G TD L +I+ +++ Q V ++N
Sbjct: 205 PGPQIVYVNQAFTKMTGYSLEDVLGKTPRLLQGSKTDQDALDKIRVALKAWQPVRVELIN 264
Query: 322 YRKDKSSFWNLLHISPIRNASG 343
Y KD S FW L I+P+ + G
Sbjct: 265 YCKDGSEFWVELSITPVTDQKG 286
>gi|409101099|ref|ZP_11221123.1| PAS/PAC sensor signal transduction histidine kinase [Pedobacter
agri PB92]
Length = 517
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 77/135 (57%), Gaps = 2/135 (1%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALD ITD + +PI++ ++ F K+SG++R ++IGRN R QG +++ +I
Sbjct: 25 ALDSSISGIIITDNTQFDNPIIYCNKAFEKLSGYTRDKVIGRNCRFLQGTERDQQAREDI 84
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
R+A+ E I V L NY+K+G FW +S + DG+ +HF+ VQ I RK+ +
Sbjct: 85 RKAVNEGHSITVELRNYRKNGELFWNELFISPI-SIHDGKVSHFIGVQNDITRRKNAEEN 143
Query: 143 GMSYSEDGGGSRLRE 157
++Y + +++E
Sbjct: 144 -LAYEREQVELKIQE 157
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 53/83 (63%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322
D P++Y + AF KL+GY R++V+G+NCRFL G + D I++++ + TV + NY
Sbjct: 42 DNPIIYCNKAFEKLSGYTRDKVIGRNCRFLQGTERDQQAREDIRKAVNEGHSITVELRNY 101
Query: 323 RKDKSSFWNLLHISPIRNASGKV 345
RK+ FWN L ISPI GKV
Sbjct: 102 RKNGELFWNELFISPISIHDGKV 124
>gi|422671422|ref|ZP_16730788.1| PAS:GGDEF protein, partial [Pseudomonas syringae pv. aceris str.
M302273]
gi|330969162|gb|EGH69228.1| PAS:GGDEF protein, partial [Pseudomonas syringae pv. aceris str.
M302273]
Length = 628
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 69/114 (60%), Gaps = 6/114 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 50 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRATLDIIREA 109
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRKH 138
+ RP+EV LLN +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 110 LSHWRPVEVELLNTRKDGSQFWV--ELSIVPVANEKGWFTHWVSVQRDITERKE 161
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%)
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320
LP +VY + AFL +TG+ EV+G+ R L DT L I+E++ + V +L
Sbjct: 62 LPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRATLDIIREALSHWRPVEVELL 121
Query: 321 NYRKDKSSFWNLLHISPIRNASG 343
N RKD S FW L I P+ N G
Sbjct: 122 NTRKDGSQFWVELSIVPVANEKG 144
>gi|448460377|ref|ZP_21597202.1| histidine kinase [Halorubrum lipolyticum DSM 21995]
gi|445807118|gb|EMA57204.1| histidine kinase [Halorubrum lipolyticum DSM 21995]
Length = 494
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P T+ +P +P+ + + F +++G+ E++G++ R QG TN T I
Sbjct: 162 AMDEAPVGITLAEPGTENNPLTYLNEEFERLTGYG-PEMLGKDCRFLQGAETNTETTAAI 220
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
REAI +ERP+ V++LNY+ + FW ++ + G EDG +V Q I RK
Sbjct: 221 REAIDDERPVSVDVLNYRANDQKFWNRLTVAPIRG-EDGSVIRYVGFQTNITERK 274
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
L +P + P+ Y ++ F +LTGY E++G++CRFL G +T+T I+E+I E+
Sbjct: 170 ITLAEPGTENNPLTYLNEEFERLTGYG-PEMLGKDCRFLQGAETNTETTAAIREAIDDER 228
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+V +LNYR + FWN L ++PIR G V+
Sbjct: 229 PVSVDVLNYRANDQKFWNRLTVAPIRGEDGSVI 261
>gi|443473374|ref|ZP_21063398.1| Signal transduction histidine kinase [Pseudomonas pseudoalcaligenes
KF707]
gi|442904111|gb|ELS29227.1| Signal transduction histidine kinase [Pseudomonas pseudoalcaligenes
KF707]
Length = 148
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 59/92 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ + D ++YA+ AF +LTGY R++++ Q+CRFL G D D L I+++I+ Q
Sbjct: 18 IVVAEQEGDDNILIYANAAFERLTGYKRDDILYQDCRFLQGEDRDQLGLAAIRQAIRAGQ 77
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
C I NYRKD S+FWN L I+P+ N S ++
Sbjct: 78 PCRQVIRNYRKDGSAFWNELSITPVFNESDQL 109
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
+D D + + + +++A+ F +++G+ R +I+ ++ R QG ++ + IR
Sbjct: 11 VDASNDGIVVAEQEGDDNILIYANAAFERLTGYKRDDILYQDCRFLQGEDRDQLGLAAIR 70
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140
+AIR +P + NY+KDG+ FW ++ VF + D + T+F+ +Q + + R
Sbjct: 71 QAIRAGQPCRQVIRNYRKDGSAFWNELSITPVFNESD-QLTYFIGIQKNVTEQVEAR 126
>gi|428215254|ref|YP_007088398.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Oscillatoria acuminata PCC 6304]
gi|428003635|gb|AFY84478.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Oscillatoria acuminata PCC 6304]
Length = 1288
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 54/91 (59%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
++I + D +VY + +F K+TGY E GQNCRFL G D L +++ +I+ Q
Sbjct: 736 IVISEYSQDNAVVYVNPSFEKMTGYSSAEATGQNCRFLQGRDRHQPALQELRNAIRNGQD 795
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
C V + NYRKD + FWN L +SP+ N G +
Sbjct: 796 CKVTLRNYRKDGTLFWNELSLSPVENERGAI 826
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Query: 41 HPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYK 100
+ +V+ + F KM+G+S AE G+N R QG ++ + E+R AIR + +V L NY+
Sbjct: 745 NAVVYVNPSFEKMTGYSSAEATGQNCRFLQGRDRHQPALQELRNAIRNGQDCKVTLRNYR 804
Query: 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
KDGT FW +S V E G TH++ VQ I RK
Sbjct: 805 KDGTLFWNELSLSPV-ENERGAITHYIGVQTDISDRK 840
>gi|334117359|ref|ZP_08491451.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Microcoleus vaginatus FGP-2]
gi|333462179|gb|EGK90784.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Microcoleus vaginatus FGP-2]
Length = 1375
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ + ITD +++ +PI++ + F +++G+ R E++G+N R QG T+ ++
Sbjct: 348 AIESCSNGIAITDATVADNPIIYVNPSFERITGYRRDELMGKNCRFLQGTDTHTPAAKQL 407
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R AI E R +V L N++KDGTPFW ++ V+ THF+ VQ I R+
Sbjct: 408 RVAIEEGRESQVILRNFRKDGTPFWHELSIAPVYNSRR-HLTHFIGVQTDITDRQ 461
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 57/88 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ D + D P++Y + +F ++TGY R+E++G+NCRFL G DT T Q++ +I+ +
Sbjct: 356 IAITDATVADNPIIYVNPSFERITGYRRDELMGKNCRFLQGTDTHTPAAKQLRVAIEEGR 415
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNA 341
V + N+RKD + FW+ L I+P+ N+
Sbjct: 416 ESQVILRNFRKDGTPFWHELSIAPVYNS 443
>gi|443477887|ref|ZP_21067698.1| multi-sensor signal transduction histidine kinase [Pseudanabaena
biceps PCC 7429]
gi|443016903|gb|ELS31469.1| multi-sensor signal transduction histidine kinase [Pseudanabaena
biceps PCC 7429]
Length = 945
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 58/92 (63%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ D P+ P +Y + +F ++TGY EV+G+NCRFL G D + + ++IQ ++
Sbjct: 269 IVITDATKPENPTIYVNPSFERITGYSAAEVIGRNCRFLQGGDRQQIGILDLHQAIQEQR 328
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
C +LNYRK+ + FWN L+I+P+ N G++
Sbjct: 329 ECHAVLLNYRKNGTPFWNDLYIAPVFNDRGEL 360
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 76/140 (54%), Gaps = 18/140 (12%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+ ITD + +P ++ + F +++G+S AE+IGRN R QG + I+++ +AI+E
Sbjct: 267 NGIVITDATKPENPTIYVNPSFERITGYSAAEVIGRNCRFLQGGDRQQIGILDLHQAIQE 326
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV-----------SRK 137
+R LLNY+K+GTPFW ++ VF + G T+++ +Q I S +
Sbjct: 327 QRECHAVLLNYRKNGTPFWNDLYIAPVFN-DRGELTNYIGIQTDITEQVKSTQRLLESEE 385
Query: 138 HMR------NSGMSYSEDGG 151
+R G+++S+D G
Sbjct: 386 RLRTVLTSIKEGITFSDDSG 405
>gi|85709182|ref|ZP_01040248.1| sensory box histidine kinase [Erythrobacter sp. NAP1]
gi|85690716|gb|EAQ30719.1| sensory box histidine kinase [Erythrobacter sp. NAP1]
Length = 358
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 64/109 (58%)
Query: 238 FISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
F + L ++ ++ S VL L D P++Y ++ F +TGY VG+NCRFL G DT
Sbjct: 5 FAEARLGEAIAKLPFSMVLASATLEDQPILYINERFTAVTGYSAEMTVGRNCRFLQGDDT 64
Query: 298 DTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
D + +I+++++ + TV + NY+ D + F N L ISPIRN G ++
Sbjct: 65 DPRSVAKIRQALEDGEDITVDLANYKADGTKFTNRLLISPIRNDVGDIV 113
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
EA+ +LP S + ++ PI++ + F ++G+S +GRN R QG T+ R++ +
Sbjct: 12 EAIAKLPFSMVLASATLEDQPILYINERFTAVTGYSAEMTVGRNCRFLQGDDTDPRSVAK 71
Query: 82 IREAIREERPIEVNLLNYKKDGTPF 106
IR+A+ + I V+L NYK DGT F
Sbjct: 72 IRQALEDGEDITVDLANYKADGTKF 96
>gi|218246869|ref|YP_002372240.1| response regulator receiver modulated diguanylate cyclase
[Cyanothece sp. PCC 8801]
gi|218167347|gb|ACK66084.1| response regulator receiver modulated diguanylate cyclase
[Cyanothece sp. PCC 8801]
Length = 481
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 61/104 (58%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L+ ++ ++ D D P++Y + F ++TGY EV G+NCRFL G D + +
Sbjct: 166 LHQAIKATYNGIIITDATQSDNPIIYVNPGFERMTGYSLEEVKGKNCRFLQGNDRNQPEI 225
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+K +Q + C + I NYRKD S FWN + +SP+++ SGK++
Sbjct: 226 LYMKTCLQEHRQCFITIRNYRKDGSMFWNEVSLSPVKDESGKLV 269
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 80/152 (52%), Gaps = 6/152 (3%)
Query: 1 MDSQLGLIE--QSFNNRYTL---WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSG 55
+ QL L E Q F+ + + +H+A+ + ITD + S +PI++ + GF +M+G
Sbjct: 142 LQRQLDLTEAAQEFHGQPQIDAYLLHQAIKATYNGIIITDATQSDNPIIYVNPGFERMTG 201
Query: 56 FSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLV 115
+S E+ G+N R QG N+ I+ ++ ++E R + + NY+KDG+ FW +S V
Sbjct: 202 YSLEEVKGKNCRFLQGNDRNQPEILYMKTCLQEHRQCFITIRNYRKDGSMFWNEVSLSPV 261
Query: 116 FGKEDGRATHFVAVQVPIVSRKHMRNSGMSYS 147
E G+ +++ VQ + RK + Y
Sbjct: 262 -KDESGKLVYYIGVQTDVTVRKRVEEERQRYE 292
>gi|448472546|ref|ZP_21601170.1| bacterio-opsin activator [Halorubrum aidingense JCM 13560]
gi|445819850|gb|EMA69684.1| bacterio-opsin activator [Halorubrum aidingense JCM 13560]
Length = 667
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 56/90 (62%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315
L DP LPD P+V+ +DA+ TGY +G+N RFL G TD + ++ ++IQ E
Sbjct: 155 LSDPDLPDYPLVHVNDAWEDHTGYPVEAALGRNPRFLQGPGTDPMTVERLSKAIQREDQI 214
Query: 316 TVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV I NYR+D + FWN L ++P+ + G++
Sbjct: 215 TVEIRNYRRDGTPFWNELTVAPVYDDDGEL 244
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
V A+ + P +++DP + +P+V + + +G+ +GRN R QGP T+ T+
Sbjct: 142 VARAVSDAPIGISLSDPDLPDYPLVHVNDAWEDHTGYPVEAALGRNPRFLQGPGTDPMTV 201
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ +AI+ E I V + NY++DGTPFW ++ V+ +DG H+V Q I RK
Sbjct: 202 ERLSKAIQREDQITVEIRNYRRDGTPFWNELTVAPVY-DDDGELAHYVGFQNDITERK 258
>gi|124515794|gb|EAY57303.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Leptospirillum rubarum]
Length = 1036
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 58/93 (62%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
S + D PD P+++A+D F++LTGY R+E +G+NCRFL G D + +I+++I+
Sbjct: 361 SLCICDALQPDFPVIFANDQFIRLTGYPRSETIGKNCRFLQGADREQESRTEIRQAIEAG 420
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
++ + NYRKD + F N L + PI + G V
Sbjct: 421 KSVRTMLRNYRKDGTPFINELSLFPITDPDGTV 453
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
S I D P++FA+ F++++G+ R+E IG+N R QG + + EIR+AI
Sbjct: 361 SLCICDALQPDFPVIFANDQFIRLTGYPRSETIGKNCRFLQGADREQESRTEIRQAIEAG 420
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQ 130
+ + L NY+KDGTPF + ++SL DG TH++ +Q
Sbjct: 421 KSVRTMLRNYRKDGTPF--INELSLFPITDPDGTVTHYLGIQ 460
>gi|410478507|ref|YP_006766144.1| signal transduction protein [Leptospirillum ferriphilum ML-04]
gi|406773759|gb|AFS53184.1| putative signal transduction protein [Leptospirillum ferriphilum
ML-04]
Length = 1036
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 58/93 (62%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
S + D PD P+++A+D F++LTGY R+E +G+NCRFL G D + +I+++I+
Sbjct: 361 SLCICDALQPDFPVIFANDQFIRLTGYPRSETIGKNCRFLQGADREQESRTEIRQAIEAG 420
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
++ + NYRKD + F N L + PI + G V
Sbjct: 421 KSVRTMLRNYRKDGTPFINELSLFPITDPDGTV 453
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
S I D P++FA+ F++++G+ R+E IG+N R QG + + EIR+AI
Sbjct: 361 SLCICDALQPDFPVIFANDQFIRLTGYPRSETIGKNCRFLQGADREQESRTEIRQAIEAG 420
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQ 130
+ + L NY+KDGTPF + ++SL DG TH++ +Q
Sbjct: 421 KSVRTMLRNYRKDGTPF--INELSLFPITDPDGTVTHYLGIQ 460
>gi|424866223|ref|ZP_18290064.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Leptospirillum sp. Group II 'C75']
gi|387223020|gb|EIJ77392.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Leptospirillum sp. Group II 'C75']
Length = 1036
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 58/93 (62%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
S + D PD P+++A+D F++LTGY R+E +G+NCRFL G D + +I+++I+
Sbjct: 361 SLCICDALQPDFPVIFANDQFIRLTGYPRSETIGKNCRFLQGADREQESRTEIRQAIEAG 420
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
++ + NYRKD + F N L + PI + G V
Sbjct: 421 KSVRTMLRNYRKDGTPFINELSLFPITDPDGTV 453
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
S I D P++FA+ F++++G+ R+E IG+N R QG + + EIR+AI
Sbjct: 361 SLCICDALQPDFPVIFANDQFIRLTGYPRSETIGKNCRFLQGADREQESRTEIRQAIEAG 420
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQ 130
+ + L NY+KDGTPF + ++SL DG TH++ +Q
Sbjct: 421 KSVRTMLRNYRKDGTPF--INELSLFPITDPDGTVTHYLGIQ 460
>gi|213968309|ref|ZP_03396453.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
pv. tomato T1]
gi|213926947|gb|EEB60498.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
pv. tomato T1]
Length = 763
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 185 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRETLDVIREA 244
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ RP+EV L+N +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 245 LTHWRPVEVELINTRKDGSQFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 295
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%)
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320
LP +VY + AFL +TG+ EV+G+ R L DT L I+E++ + V ++
Sbjct: 197 LPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRETLDVIREALTHWRPVEVELI 256
Query: 321 NYRKDKSSFWNLLHISPIRNASG 343
N RKD S FW L I P+ N G
Sbjct: 257 NTRKDGSQFWVELSIVPVANEKG 279
>gi|28868556|ref|NP_791175.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
syringae pv. tomato str. DC3000]
gi|28851794|gb|AAO54870.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
pv. tomato str. DC3000]
Length = 763
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 185 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRETLDVIREA 244
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ RP+EV L+N +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 245 LTHWRPVEVELINTRKDGSQFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 295
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%)
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320
LP +VY + AFL +TG+ EV+G+ R L DT L I+E++ + V ++
Sbjct: 197 LPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRETLDVIREALTHWRPVEVELI 256
Query: 321 NYRKDKSSFWNLLHISPIRNASG 343
N RKD S FW L I P+ N G
Sbjct: 257 NTRKDGSQFWVELSIVPVANEKG 279
>gi|428225933|ref|YP_007110030.1| PAS/PAC and GAF sensor-containing diguanylate
cyclase/phosphodiesterase [Geitlerinema sp. PCC 7407]
gi|427985834|gb|AFY66978.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Geitlerinema sp. PCC 7407]
Length = 1135
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+ +TDP+ +P+++ + F ++G+S +++G+N R QGP ++ + E+R AIRE
Sbjct: 437 NGIVVTDPTQPDNPVIYVNPAFEGITGYSGEDVLGKNCRFLQGPDRDQAGVEELRRAIRE 496
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+R V L N +KDG FW ++ VF ++ G THFV +Q I RK
Sbjct: 497 QRECHVVLHNTRKDGVDFWNELFVAPVFDRQ-GYLTHFVGIQNDITERK 544
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 15/137 (10%)
Query: 207 AIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPM 266
AI N+L+ Q RL +R I++S V+ DP PD P+
Sbjct: 407 AIANVLATAIDRKQADSRLHLMERV-------IAAS--------SNGIVVTDPTQPDNPV 451
Query: 267 VYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDK 326
+Y + AF +TGY +V+G+NCRFL G D D + +++ +I+ ++ C V + N RKD
Sbjct: 452 IYVNPAFEGITGYSGEDVLGKNCRFLQGPDRDQAGVEELRRAIREQRECHVVLHNTRKDG 511
Query: 327 SSFWNLLHISPIRNASG 343
FWN L ++P+ + G
Sbjct: 512 VDFWNELFVAPVFDRQG 528
>gi|158853257|dbj|BAF91490.1| AUREO-like protein [Fucus distichus]
Length = 183
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 57/83 (68%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L + SF + DP LPD P+VYAS+ F++LTGYDR++V+G+NCRFL G DTD +
Sbjct: 98 LVKALQSSQPSFCVTDPQLPDNPIVYASNTFIELTGYDRSQVLGRNCRFLQGPDTDPDAV 157
Query: 303 YQIKESIQTEQACTVRILNYRKD 325
+I++ I+ + +V + Y+ D
Sbjct: 158 AKIRKGIEEGKDTSVFLRQYKAD 180
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 59/99 (59%), Gaps = 5/99 (5%)
Query: 6 GLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN 65
L+EQS + +AL SF +TDP + +PIV+AS F++++G+ R++++GRN
Sbjct: 89 ALLEQS-----DFLLVKALQSSQPSFCVTDPQLPDNPIVYASNTFIELTGYDRSQVLGRN 143
Query: 66 GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGT 104
R QGP T+ + +IR+ I E + V L YK DGT
Sbjct: 144 CRFLQGPDTDPDAVAKIRKGIEEGKDTSVFLRQYKADGT 182
>gi|422656625|ref|ZP_16719070.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
pv. lachrymans str. M302278]
gi|331015153|gb|EGH95209.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
pv. lachrymans str. M302278]
Length = 674
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 96 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRETLDVIREA 155
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ RP+EV L+N +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 156 LTHWRPVEVELINTRKDGSQFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 206
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%)
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320
LP +VY + AFL +TG+ EV+G+ R L DT L I+E++ + V ++
Sbjct: 108 LPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRETLDVIREALTHWRPVEVELI 167
Query: 321 NYRKDKSSFWNLLHISPIRNASG 343
N RKD S FW L I P+ N G
Sbjct: 168 NTRKDGSQFWVELSIVPVANEKG 190
>gi|302060301|ref|ZP_07251842.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
pv. tomato K40]
Length = 711
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 133 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRETLDVIREA 192
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ RP+EV L+N +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 193 LTHWRPVEVELINTRKDGSQFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 243
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%)
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320
LP +VY + AFL +TG+ EV+G+ R L DT L I+E++ + V ++
Sbjct: 145 LPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRETLDVIREALTHWRPVEVELI 204
Query: 321 NYRKDKSSFWNLLHISPIRNASG 343
N RKD S FW L I P+ N G
Sbjct: 205 NTRKDGSQFWVELSIVPVANEKG 227
>gi|119952737|ref|YP_950384.1| sensory box protein [Arthrobacter aurescens TC1]
gi|119951867|gb|ABM10776.1| Sensory Box Protein [Arthrobacter aurescens TC1]
Length = 727
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 82/140 (58%), Gaps = 7/140 (5%)
Query: 5 LGLIEQSFNNRYTL---WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEI 61
LG++E++ ++ + + +ALD + D ITD +G +V+A++ F ++G+S AE+
Sbjct: 26 LGMLERAKPHKALVSAELLGQALDTVSDGSLITD---AGQNVVYANKAFESVTGYSTAEM 82
Query: 62 IGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDG 121
+GRN R+ QGP ++ TI +R + +LNY+K+GTPFW +S G
Sbjct: 83 LGRNCRVLQGPGSDPETIAMMRTVLGRGETFRCEILNYRKNGTPFWNGLTVS-PLRDAAG 141
Query: 122 RATHFVAVQVPIVSRKHMRN 141
THFV+VQ + +++ M++
Sbjct: 142 VITHFVSVQRDVTAQRTMQD 161
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 266 MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKD 325
+VYA+ AF +TGY E++G+NCR L G +D + ++ + + ILNYRK+
Sbjct: 64 VVYANKAFESVTGYSTAEMLGRNCRVLQGPGSDPETIAMMRTVLGRGETFRCEILNYRKN 123
Query: 326 KSSFWNLLHISPIRNASGKV 345
+ FWN L +SP+R+A+G +
Sbjct: 124 GTPFWNGLTVSPLRDAAGVI 143
>gi|302129938|ref|ZP_07255928.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
pv. tomato NCPPB 1108]
Length = 674
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 96 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRETLDVIREA 155
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ RP+EV L+N +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 156 LTHWRPVEVELINTRKDGSQFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 206
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%)
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320
LP +VY + AFL +TG+ EV+G+ R L DT L I+E++ + V ++
Sbjct: 108 LPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRETLDVIREALTHWRPVEVELI 167
Query: 321 NYRKDKSSFWNLLHISPIRNASG 343
N RKD S FW L I P+ N G
Sbjct: 168 NTRKDGSQFWVELSIVPVANEKG 190
>gi|145350313|ref|XP_001419556.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579788|gb|ABO97849.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 110
Score = 83.6 bits (205), Expect = 1e-13, Method: Composition-based stats.
Identities = 37/85 (43%), Positives = 54/85 (63%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILN 321
PD P++YA+ F +TGY E VG NCRFL G TD L +++ +I+ +A TV + N
Sbjct: 16 PDQPLIYANVGFEVMTGYSVQETVGHNCRFLQGPGTDQNELNKLRNAIKKGEAVTVVLKN 75
Query: 322 YRKDKSSFWNLLHISPIRNASGKVL 346
Y+K F N L ++PIR+A G+V+
Sbjct: 76 YKKSGEEFMNQLSLTPIRDADGQVM 100
Score = 70.1 bits (170), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 63/108 (58%), Gaps = 3/108 (2%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
+D + TI D + P+++A+ GF M+G+S E +G N R QGP T++ + ++R
Sbjct: 1 MDSCAEGITIADFTQPDQPLIYANVGFEVMTGYSVQETVGHNCRFLQGPGTDQNELNKLR 60
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKE-DGRATHFVAVQ 130
AI++ + V L NYKK G F + ++SL ++ DG+ ++V +Q
Sbjct: 61 NAIKKGEAVTVVLKNYKKSGEEF--MNQLSLTPIRDADGQVMYYVGIQ 106
>gi|340960476|gb|EGS21657.1| hypothetical protein CTHT_0035220 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 791
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 55/97 (56%), Gaps = 3/97 (3%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
S+Y LG +F + DP PD P+VY SD L +TGY RN + +N R L GV TD
Sbjct: 297 SVYPGLG---DAFCMTDPLQPDNPVVYVSDGLLDMTGYRRNAITKKNSRLLQGVATDPLA 353
Query: 302 LYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
++ +I T + ++NY+ D + FWNLL I P+
Sbjct: 354 AQRVSNAISTRREVVELMVNYQSDGTPFWNLLFICPL 390
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 4/122 (3%)
Query: 11 SFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQ 70
S N+ + + L D+F +TDP +P+V+ S G L M+G+ R I +N R+ Q
Sbjct: 286 SANSASSAEIKSVYPGLGDAFCMTDPLQPDNPVVYVSDGLLDMTGYRRNAITKKNSRLLQ 345
Query: 71 GPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFW-MLFKMSLVFGKEDGRATHFVAV 129
G T+ + AI R + ++NY+ DGTPFW +LF L+ E G +F+
Sbjct: 346 GVATDPLAAQRVSNAISTRREVVELMVNYQSDGTPFWNLLFICPLM---ERGVIRYFLGA 402
Query: 130 QV 131
Q+
Sbjct: 403 QI 404
>gi|301383442|ref|ZP_07231860.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
pv. tomato Max13]
Length = 674
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 96 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRETLDVIREA 155
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ RP+EV L+N +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 156 LTHWRPVEVELINTRKDGSQFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 206
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%)
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320
LP +VY + AFL +TG+ EV+G+ R L DT L I+E++ + V ++
Sbjct: 108 LPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRETLDVIREALTHWRPVEVELI 167
Query: 321 NYRKDKSSFWNLLHISPIRNASG 343
N RKD S FW L I P+ N G
Sbjct: 168 NTRKDGSQFWVELSIVPVANEKG 190
>gi|323138135|ref|ZP_08073208.1| PAS sensor protein [Methylocystis sp. ATCC 49242]
gi|322396597|gb|EFX99125.1| PAS sensor protein [Methylocystis sp. ATCC 49242]
Length = 150
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 64/110 (58%)
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G I + L L L DP + D P+VYA+ AF +TGY + E++G+NCRFL G D
Sbjct: 9 GIIPAILTQILDSCVNGATLADPDMEDAPIVYANKAFEDMTGYSQEEIIGRNCRFLQGQD 68
Query: 297 TDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+D + ++E++ + V + NY+K+ F+N L+I+P+ + G V+
Sbjct: 69 SDQEGIGILREALSKHEKVEVTLRNYKKNGELFFNKLNITPLLDNKGNVI 118
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+ LD + T+ DP + PIV+A++ F M+G+S+ EIIGRN R QG +++ I
Sbjct: 17 QILDSCVNGATLADPDMEDAPIVYANKAFEDMTGYSQEEIIGRNCRFLQGQDSDQEGIGI 76
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+REA+ + +EV L NYKK+G F+ ++ + + G +++ VQ +
Sbjct: 77 LREALSKHEKVEVTLRNYKKNGELFFNKLNITPLLDNK-GNVIYYLGVQYDV 127
>gi|206602037|gb|EDZ38519.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Leptospirillum sp. Group II '5-way CG']
Length = 1035
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 55/93 (59%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
S + D PD P+++A+D F +LTGY R E VG+NCRFL G D + +I+E+++
Sbjct: 360 SLCICDALQPDFPIIFANDMFFRLTGYSRAETVGKNCRFLQGADREQKSRTEIREALKAG 419
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+A I NYR D + F N L + PI + G V
Sbjct: 420 KAIRTLIRNYRMDGTPFMNELSLFPITDPDGTV 452
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 60/102 (58%), Gaps = 3/102 (2%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
S I D PI+FA+ F +++G+SRAE +G+N R QG +++ EIREA++
Sbjct: 360 SLCICDALQPDFPIIFANDMFFRLTGYSRAETVGKNCRFLQGADREQKSRTEIREALKAG 419
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQ 130
+ I + NY+ DGTPF + ++SL DG TH++ +Q
Sbjct: 420 KAIRTLIRNYRMDGTPF--MNELSLFPITDPDGTVTHYLGIQ 459
>gi|116753699|ref|YP_842817.1| multi-sensor hybrid histidine kinase [Methanosaeta thermophila PT]
gi|116665150|gb|ABK14177.1| multi-sensor hybrid histidine kinase [Methanosaeta thermophila PT]
Length = 1692
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 5/105 (4%)
Query: 35 DPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94
DPS I++ + F +M+G++R E++GR +GP T+R IMEI EA+R +P+
Sbjct: 850 DPSDGMPKIIYVNSAFTRMTGYAREEVLGRYPDFLEGPETDRSKIMEILEAVRNAQPVNQ 909
Query: 95 NLLNYKKDGTPFWMLFKMSLVFGKED--GRATHFVAVQVPIVSRK 137
L+NY+KDG+ FW+ +F D G TH+V++Q R+
Sbjct: 910 ELVNYRKDGSRFWVELN---IFPVRDHMGEVTHWVSIQRDTTERR 951
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 77/139 (55%), Gaps = 7/139 (5%)
Query: 209 DNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPD-MP-M 266
D +S+L + G V K+ S+ M + S++ S + V+ P D MP +
Sbjct: 804 DAEISILVASASTIGEAVA-KKDSIERMRLLESAVVNS----NDAIVIAAPDPSDGMPKI 858
Query: 267 VYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDK 326
+Y + AF ++TGY R EV+G+ FL G +TD + + +I E+++ Q ++NYRKD
Sbjct: 859 IYVNSAFTRMTGYAREEVLGRYPDFLEGPETDRSKIMEILEAVRNAQPVNQELVNYRKDG 918
Query: 327 SSFWNLLHISPIRNASGKV 345
S FW L+I P+R+ G+V
Sbjct: 919 SRFWVELNIFPVRDHMGEV 937
>gi|260804669|ref|XP_002597210.1| hypothetical protein BRAFLDRAFT_203328 [Branchiostoma floridae]
gi|229282473|gb|EEN53222.1| hypothetical protein BRAFLDRAFT_203328 [Branchiostoma floridae]
Length = 910
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 64/96 (66%), Gaps = 2/96 (2%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNC--RFLNGVDTDTTVLYQIKESIQ 310
SF+L + + D P+VY ++ F KL+GY R EV+ ++C RF++G TD + +I+E+++
Sbjct: 4 SFLLANASIVDWPIVYCNEGFSKLSGYSRAEVMQKSCTCRFMHGELTDKETVKKIEETLE 63
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ V IL Y+K+++ W LLH++PI+N KV+
Sbjct: 64 VQDTAQVEILMYKKNRTPLWFLLHVAPIKNEKDKVV 99
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNG--RMFQGPRTNRRTIMEIREAIR 87
SF + + SI PIV+ + GF K+SG+SRAE++ ++ R G T++ T+ +I E +
Sbjct: 4 SFLLANASIVDWPIVYCNEGFSKLSGYSRAEVMQKSCTCRFMHGELTDKETVKKIEETLE 63
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED 120
+ +V +L YKK+ TP W L ++ + ++D
Sbjct: 64 VQDTAQVEILMYKKNRTPLWFLLHVAPIKNEKD 96
>gi|91790035|ref|YP_550987.1| multi-sensor signal transduction histidine kinase [Polaromonas sp.
JS666]
gi|91699260|gb|ABE46089.1| multi-sensor signal transduction histidine kinase [Polaromonas sp.
JS666]
Length = 1562
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 68/121 (56%), Gaps = 4/121 (3%)
Query: 20 VHEALDELPDSFTITDPSISGHP---IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNR 76
+ ++ L D IT+ G P IVF + F++ +G+SR E++G+ R+ QGP+T R
Sbjct: 765 LESSISRLNDMVVITEAVPLGEPGPRIVFVNDAFVRRTGYSREEVLGKTPRILQGPQTQR 824
Query: 77 RTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+ I A+R +P++ L+NY K G PFW+ + V + G TH+VAV+ I R
Sbjct: 825 AELDRIGAALRAWQPVQAELVNYTKSGEPFWLDLDIVPVADSQGG-FTHWVAVERDITQR 883
Query: 137 K 137
K
Sbjct: 884 K 884
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILN 321
P +V+ +DAF++ TGY R EV+G+ R L G T L +I +++ Q ++N
Sbjct: 787 PGPRIVFVNDAFVRRTGYSREEVLGKTPRILQGPQTQRAELDRIGAALRAWQPVQAELVN 846
Query: 322 YRKDKSSFWNLLHISPIRNASG 343
Y K FW L I P+ ++ G
Sbjct: 847 YTKSGEPFWLDLDIVPVADSQG 868
>gi|322435708|ref|YP_004217920.1| PAS/PAC sensor signal transduction histidine kinase [Granulicella
tundricola MP5ACTX9]
gi|321163435|gb|ADW69140.1| PAS/PAC sensor signal transduction histidine kinase [Granulicella
tundricola MP5ACTX9]
Length = 507
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 53/84 (63%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILN 321
PD+P+VY + AF +TGY EV G+NCRFL +T+ L I+E++ + + N
Sbjct: 171 PDLPLVYVNPAFEVMTGYSLEEVQGKNCRFLQKGETEQPGLTLIREALAAGREVVAILRN 230
Query: 322 YRKDKSSFWNLLHISPIRNASGKV 345
YRKD + FWN L +SPIRN G++
Sbjct: 231 YRKDGTVFWNELSLSPIRNRDGEL 254
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 73/147 (49%), Gaps = 18/147 (12%)
Query: 3 SQLGLI---EQSFNNRYTLWVHEALDELPDSFTITDPSISG----------HPIVFASRG 49
+Q+GLI ++F RY AL+EL + I SG P+V+ +
Sbjct: 126 AQMGLILYAHRAFARRY----QSALEELQLNRRIFRSVTSGISVANAKEPDLPLVYVNPA 181
Query: 50 FLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWML 109
F M+G+S E+ G+N R Q T + + IREA+ R + L NY+KDGT FW
Sbjct: 182 FEVMTGYSLEEVQGKNCRFLQKGETEQPGLTLIREALAAGREVVAILRNYRKDGTVFWNE 241
Query: 110 FKMSLVFGKEDGRATHFVAVQVPIVSR 136
+S + + DG THFV +Q + SR
Sbjct: 242 LSLSPIRNR-DGELTHFVGIQNDVTSR 267
>gi|258654953|ref|YP_003204109.1| PAS/PAC sensor protein [Nakamurella multipartita DSM 44233]
gi|258558178|gb|ACV81120.1| putative PAS/PAC sensor protein [Nakamurella multipartita DSM
44233]
Length = 149
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 52/76 (68%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322
D P+VYA+++F ++TGY E++G NCRFL G DTD + ++ E+I+ +V I NY
Sbjct: 41 DAPLVYANESFQRMTGYAPEEILGHNCRFLQGPDTDRAQVRRLHEAIRRHTDISVIIRNY 100
Query: 323 RKDKSSFWNLLHISPI 338
R+D S FWN + ISPI
Sbjct: 101 RRDGSWFWNKVSISPI 116
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%)
Query: 42 PIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKK 101
P+V+A+ F +M+G++ EI+G N R QGP T+R + + EAIR I V + NY++
Sbjct: 43 PLVYANESFQRMTGYAPEEILGHNCRFLQGPDTDRAQVRRLHEAIRRHTDISVIIRNYRR 102
Query: 102 DGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
DG+ FW +S + THF+ Q+ +
Sbjct: 103 DGSWFWNKVSISPIHEPGSDEVTHFIGTQIDV 134
>gi|168701749|ref|ZP_02734026.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
2246]
Length = 1178
Score = 82.8 bits (203), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/100 (37%), Positives = 60/100 (60%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L Q + D PD P+VY + F ++TGY E +G+NCRFL G TD + + +
Sbjct: 695 ALAAFPQGVAIADATRPDHPLVYVNPGFERMTGYPAAEALGRNCRFLQGKGTDPSAVAAV 754
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +++ +A V +LNYRKD FWN L ++P+R+ +G +
Sbjct: 755 RAALRDGRAALVELLNYRKDGKPFWNALTVAPVRDGAGAL 794
Score = 79.0 bits (193), Expect = 3e-12, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL P I D + HP+V+ + GF +M+G+ AE +GRN R QG T+ + +
Sbjct: 695 ALAAFPQGVAIADATRPDHPLVYVNPGFERMTGYPAAEALGRNCRFLQGKGTDPSAVAAV 754
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
R A+R+ R V LLNY+KDG PFW ++ V G THFVA+Q + K +
Sbjct: 755 RAALRDGRAALVELLNYRKDGKPFWNALTVAPVRDGA-GALTHFVAIQTDVSPLKQL 810
>gi|386712617|ref|YP_006178939.1| blue-light photoreceptor [Halobacillus halophilus DSM 2266]
gi|384072172|emb|CCG43662.1| blue-light photoreceptor [Halobacillus halophilus DSM 2266]
Length = 266
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 56/93 (60%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
++ R+ V+ DP D PM+Y + F LTGY E++G+NCRFL G DT + ++ +I
Sbjct: 21 AIDRVGAGVVISDPEQEDNPMIYCNKGFEDLTGYKAEEILGKNCRFLQGEDTSSQMVDKI 80
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
++ + + V + NY+KD + FWN L I P+
Sbjct: 81 RKGLSNYENVLVELKNYKKDGTMFWNELQIFPV 113
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRT 78
++ A+D + I+DP +P+++ ++GF ++G+ EI+G+N R QG T+ +
Sbjct: 17 FIKAAIDRVGAGVVISDPEQEDNPMIYCNKGFEDLTGYKAEEILGKNCRFLQGEDTSSQM 76
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+ +IR+ + + V L NYKKDGT FW ++ V+ ++ + FV VQ + R+
Sbjct: 77 VDKIRKGLSNYENVLVELKNYKKDGTMFWNELQIFPVYIQQMDQ-NFFVGVQRDVSQRRE 135
Query: 139 MR 140
+
Sbjct: 136 QQ 137
>gi|428770095|ref|YP_007161885.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
[Cyanobacterium aponinum PCC 10605]
gi|428684374|gb|AFZ53841.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Cyanobacterium aponinum PCC 10605]
Length = 596
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 3/117 (2%)
Query: 23 ALDELPDSFTITDPSIS--GHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
A+ DS ITD + G IVF ++ F KM+G+ +EIIG+ R+ QGP T+R
Sbjct: 45 AVHSAHDSIVITDTQLDYPGPRIVFVNKAFTKMTGYQESEIIGKTPRILQGPNTDRTIFR 104
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
E++ +R+ + +NY+KDGT F+ + + ++ E G+ TH++A+Q + +K
Sbjct: 105 ELKNNLRKGKVFFGEAINYRKDGTEFYNQWHIEPIYNSE-GKLTHYLAIQRDVTEKK 160
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 253 SFVLIDPHL--PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
S V+ D L P +V+ + AF K+TGY +E++G+ R L G +TD T+ ++K +++
Sbjct: 52 SIVITDTQLDYPGPRIVFVNKAFTKMTGYQESEIIGKTPRILQGPNTDRTIFRELKNNLR 111
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +NYRKD + F+N HI PI N+ GK+
Sbjct: 112 KGKVFFGEAINYRKDGTEFYNQWHIEPIYNSEGKL 146
>gi|427714672|ref|YP_007063296.1| PAS domain-containing protein [Synechococcus sp. PCC 6312]
gi|427378801|gb|AFY62753.1| PAS domain S-box [Synechococcus sp. PCC 6312]
Length = 1154
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 59/92 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ D PD P++YA+ AF K+TGY +EV+G+NCRFL G D + L ++ +I+ Q
Sbjct: 330 IVITDHRRPDYPVIYANPAFEKITGYRVSEVIGRNCRFLQGDDQNQPGLQALRHAIKKGQ 389
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ V + N RK+ + FWN L ISPI + G++
Sbjct: 390 SGRVVLKNIRKNGTVFWNELSISPIYDDQGQL 421
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ + ITD +P+++A+ F K++G+ +E+IGRN R QG N+ + +
Sbjct: 322 AIEASTNGIVITDHRRPDYPVIYANPAFEKITGYRVSEVIGRNCRFLQGDDQNQPGLQAL 381
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R AI++ + V L N +K+GT FW +S ++ + G+ TH++ +Q + RK
Sbjct: 382 RHAIKKGQSGRVVLKNIRKNGTVFWNELSISPIY-DDQGQLTHYIGIQTDVSERK 435
>gi|383645221|ref|ZP_09957627.1| LuxR family transcriptional regulator [Sphingomonas elodea ATCC
31461]
Length = 193
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 61/93 (65%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
+ VL +P LPD P++ ++AF+ LTGY R+E+VG+NCRFL+G T+ + + ++ +
Sbjct: 11 AAVLSNPRLPDNPIIDCNEAFIALTGYQRDEIVGRNCRFLSGDKTEPWLSEALSAGVREK 70
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ V ILNY+KD + F N + ++PI G++
Sbjct: 71 RPVMVEILNYKKDGTPFRNAVLVAPIFGEDGEL 103
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ +++P + +PI+ + F+ ++G+ R EI+GRN R G +T + +RE+
Sbjct: 11 AAVLSNPRLPDNPIIDCNEAFIALTGYQRDEIVGRNCRFLSGDKTEPWLSEALSAGVREK 70
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
RP+ V +LNYKKDGTPF ++ +FG EDG +F+ Q+ + K
Sbjct: 71 RPVMVEILNYKKDGTPFRNAVLVAPIFG-EDGELEYFLGSQMEVEGPKE 118
>gi|448467413|ref|ZP_21599425.1| bacterio-opsin activator [Halorubrum kocurii JCM 14978]
gi|445812289|gb|EMA62283.1| bacterio-opsin activator [Halorubrum kocurii JCM 14978]
Length = 555
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 57/92 (61%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ D PDMP++Y + AF ++TGY + VG+NCRFL G T + Q++ +I+ +
Sbjct: 47 ITIADATEPDMPLIYVNAAFERMTGYSTSYAVGRNCRFLQGEATREKPVRQMRAAIENGE 106
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV + NYR+D FWN + ++P+R+ + ++
Sbjct: 107 PTTVELRNYRRDGELFWNEVTLAPLRDEADEI 138
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
+DE P TI D + P+++ + F +M+G+S + +GRN R QG T + + ++R
Sbjct: 40 MDEAPVGITIADATEPDMPLIYVNAAFERMTGYSTSYAVGRNCRFLQGEATREKPVRQMR 99
Query: 84 EAIREERPIEVNLLNYKKDGTPFW 107
AI P V L NY++DG FW
Sbjct: 100 AAIENGEPTTVELRNYRRDGELFW 123
>gi|373956387|ref|ZP_09616347.1| PAS/PAC sensor signal transduction histidine kinase
[Mucilaginibacter paludis DSM 18603]
gi|373892987|gb|EHQ28884.1| PAS/PAC sensor signal transduction histidine kinase
[Mucilaginibacter paludis DSM 18603]
Length = 508
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Query: 233 LPGMGFISSSLYISLGRIKQSFVLIDPHL-PDMPMVYASDAFLKLTGYDRNEVVGQNCRF 291
LP G L+ + V+I H PD P++Y + AF +TGY E++G NCRF
Sbjct: 8 LPNTGQTDIRLFAAAVSASNHGVVITDHTQPDEPIIYCNKAFESITGYTNKEIIGHNCRF 67
Query: 292 LNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
L D + +++E+I+ + C V I NY+K+ WN L ISP+++ G V
Sbjct: 68 LQDGDNEQEGRRRLREAIKNGEHCQVEIRNYKKNGRMIWNELMISPVKDRDGNV 121
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 32 TITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91
ITD + PI++ ++ F ++G++ EIIG N R Q + +REAI+
Sbjct: 31 VITDHTQPDEPIIYCNKAFESITGYTNKEIIGHNCRFLQDGDNEQEGRRRLREAIKNGEH 90
Query: 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSED 149
+V + NYKK+G W +S V + DG T+F+ +Q I RK ++ S ++
Sbjct: 91 CQVEIRNYKKNGRMIWNELMISPVKDR-DGNVTNFIGIQNDITRRKEAEDALASEKQN 147
>gi|448488189|ref|ZP_21607119.1| PAS fold domain-containing protein [Halorubrum californiensis DSM
19288]
gi|445696451|gb|ELZ48540.1| PAS fold domain-containing protein [Halorubrum californiensis DSM
19288]
Length = 183
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 65/110 (59%), Gaps = 1/110 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALD+LP T+T P+ PIV+ +R F + +G++ E+ GRN R+FQGP + ++
Sbjct: 61 ALDDLPLGLTLTGPAYRDTPIVYVNRWFREWTGYALDELRGRNPRLFQGPDADADARADV 120
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132
REA+ + V N ++DGTPF + +FG + G TH++AVQ P
Sbjct: 121 REALSTWSRVAVEFRNRRRDGTPFANRVSLRPLFG-DAGTVTHWIAVQEP 169
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + L P D P+VY + F + TGY +E+ G+N R G D D +
Sbjct: 61 ALDDLPLGLTLTGPAYRDTPIVYVNRWFREWTGYALDELRGRNPRLFQGPDADADARADV 120
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+E++ T V N R+D + F N + + P+ +G V
Sbjct: 121 REALSTWSRVAVEFRNRRRDGTPFANRVSLRPLFGDAGTV 160
>gi|433462167|ref|ZP_20419757.1| blue-light photoreceptor [Halobacillus sp. BAB-2008]
gi|432189149|gb|ELK46278.1| blue-light photoreceptor [Halobacillus sp. BAB-2008]
Length = 268
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 54/93 (58%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
++ R+ V+ DP D PM+Y + F +LTGY E++G+NCRFL G +T + I
Sbjct: 21 AIDRVGAGVVITDPEQEDNPMIYCNKGFQELTGYQPEEILGKNCRFLQGEETKPEKIKLI 80
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
++ + + V + NYRKD S FWN L I P+
Sbjct: 81 RQGLANREPVLVELRNYRKDGSLFWNELQIFPV 113
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 1/120 (0%)
Query: 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRT 78
++ A+D + ITDP +P+++ ++GF +++G+ EI+G+N R QG T
Sbjct: 17 FIKAAIDRVGAGVVITDPEQEDNPMIYCNKGFQELTGYQPEEILGKNCRFLQGEETKPEK 76
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
I IR+ + P+ V L NY+KDG+ FW ++ V+ E T+FV VQ + R+
Sbjct: 77 IKLIRQGLANREPVLVELRNYRKDGSLFWNELQIFPVY-IEQMDQTYFVGVQKDVTKRRE 135
>gi|410092868|ref|ZP_11289376.1| putative PAS/PAC sensor protein [Pseudomonas viridiflava UASWS0038]
gi|409759775|gb|EKN44969.1| putative PAS/PAC sensor protein [Pseudomonas viridiflava UASWS0038]
Length = 151
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 57/93 (61%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ + D ++YA+ F LTGY EV+ Q+CRFL D L I+++I++ Q
Sbjct: 18 IVVAEQEGDDNILIYANKGFAALTGYSVEEVLYQDCRFLQATDRQQEALEAIQKAIRSGQ 77
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
AC + NYRKD S+FWN L I+P+RN + +++
Sbjct: 78 ACRQILRNYRKDGSTFWNELSITPVRNEANQLM 110
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
+D D + + + +++A++GF ++G+S E++ ++ R Q + + I+
Sbjct: 11 IDASTDGIVVAEQEGDDNILIYANKGFAALTGYSVEEVLYQDCRFLQATDRQQEALEAIQ 70
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
+AIR + L NY+KDG+ FW ++ V E + +++ +Q
Sbjct: 71 KAIRSGQACRQILRNYRKDGSTFWNELSITPVRN-EANQLMYYIGIQ 116
>gi|339483714|ref|YP_004695500.1| PAS sensor protein [Nitrosomonas sp. Is79A3]
gi|338805859|gb|AEJ02101.1| PAS sensor protein [Nitrosomonas sp. Is79A3]
Length = 150
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 63/110 (57%)
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G I L L L DP DMP+VY + AF +TGY EVVG+NCRFL G +
Sbjct: 10 GLIPQVLSKILDSCVNGVSLADPDQEDMPLVYVNKAFETITGYTLAEVVGKNCRFLQGKE 69
Query: 297 TDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
D + +++E+I+ ++ V + NYRK+ F+N L +SP+ ++ G +L
Sbjct: 70 HDQAEVDKLREAIKNKKPVEVTLHNYRKNGELFYNHLVMSPLFDSHGNLL 119
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
LD + ++ DP P+V+ ++ F ++G++ AE++G+N R QG ++ + ++R
Sbjct: 20 LDSCVNGVSLADPDQEDMPLVYVNKAFETITGYTLAEVVGKNCRFLQGKEHDQAEVDKLR 79
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
EAI+ ++P+EV L NY+K+G F+ MS +F G +F+ VQ+ + +
Sbjct: 80 EAIKNKKPVEVTLHNYRKNGELFYNHLVMSPLFDSH-GNLLYFLGVQLDVTPQ 131
>gi|254416779|ref|ZP_05030529.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196176519|gb|EDX71533.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 653
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 68/118 (57%), Gaps = 4/118 (3%)
Query: 29 DSFTITDPSISGHP---IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ P IV+ ++GF +M+G++ E+IG+ R QGP+T+R +IR+
Sbjct: 378 DAIVITEAHPIDKPGPRIVYVNQGFTRMTGYTSDEVIGKTPRFLQGPKTDRAQADKIRDT 437
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143
+ P+ L+NY+KDG+ FW+ + V E+G TH++A++ I RK + +
Sbjct: 438 LCRWEPVRAELINYRKDGSEFWVELNIVPVVD-ENGDYTHWMAIERDISQRKQLETAS 494
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 253 SFVLIDPHLPDMP---MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+ V+ + H D P +VY + F ++TGY +EV+G+ RFL G TD +I++++
Sbjct: 379 AIVITEAHPIDKPGPRIVYVNQGFTRMTGYTSDEVIGKTPRFLQGPKTDRAQADKIRDTL 438
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+ ++NYRKD S FW L+I P+ + +G
Sbjct: 439 CRWEPVRAELINYRKDGSEFWVELNIVPVVDENG 472
>gi|408398639|gb|EKJ77769.1| hypothetical protein FPSE_02267 [Fusarium pseudograminearum CS3096]
Length = 729
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 60/96 (62%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+ + F L DP PD P+V+AS+ F + T Y + V+G+NCRFL G T++ + +I+E +
Sbjct: 344 LAEVFCLTDPSRPDNPIVFASEEFHRTTQYGMDYVLGRNCRFLQGPKTNSYSVQRIREKL 403
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ Q LNYR+D S F NLL +SP+ ++ G V
Sbjct: 404 KAGQDHCETFLNYRRDGSPFMNLLMVSPLYDSRGIV 439
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 54/90 (60%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L + F +TDPS +PIVFAS F + + + ++GRN R QGP+TN ++ IRE +
Sbjct: 344 LAEVFCLTDPSRPDNPIVFASEEFHRTTQYGMDYVLGRNCRFLQGPKTNSYSVQRIREKL 403
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVF 116
+ + LNY++DG+PF L +S ++
Sbjct: 404 KAGQDHCETFLNYRRDGSPFMNLLMVSPLY 433
>gi|413963674|ref|ZP_11402901.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
[Burkholderia sp. SJ98]
gi|413929506|gb|EKS68794.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
[Burkholderia sp. SJ98]
Length = 1032
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 51/76 (67%)
Query: 268 YASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKS 327
YA+ AF ++TGYD +EV+GQ+CRFL+G D D L I+ ++ +V + NYRKD +
Sbjct: 502 YANPAFKRITGYDPSEVIGQDCRFLHGPDGDQEGLTSIRRALDANMEASVVVRNYRKDGA 561
Query: 328 SFWNLLHISPIRNASG 343
FWN L ++P+ NA G
Sbjct: 562 LFWNQLFVAPVPNAQG 577
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALD ++ IT + I +A+ F +++G+ +E+IG++ R GP ++ + I
Sbjct: 480 ALDASVNAILITGVVDGANVIEYANPAFKRITGYDPSEVIGQDCRFLHGPDGDQEGLTSI 539
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAV 129
R A+ V + NY+KDG FW ++ V + G TH + +
Sbjct: 540 RRALDANMEASVVVRNYRKDGALFWNQLFVAPVPNAQ-GMTTHHIGI 585
>gi|395325417|gb|EJF57840.1| hypothetical protein DICSQDRAFT_91716 [Dichomitus squalens LYAD-421
SS1]
Length = 926
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 65/109 (59%), Gaps = 11/109 (10%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG-------- 294
+Y+ + +FV+ D D P+VYAS +FLKLTGY+ +EV+G+NCRFL
Sbjct: 133 IYLGPVDLSCAFVVTDTRRFDAPIVYASPSFLKLTGYEEHEVIGRNCRFLQAPAGLIQRG 192
Query: 295 ---VDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRN 340
+ T + ++++I ++ C V I+NYRKD S+F N++ + P+R
Sbjct: 193 HERLHTSREAVAHMRKNIVADKECQVSIINYRKDGSAFINMVSVIPLRG 241
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP-----------RTNRRT 78
+F +TD PIV+AS FLK++G+ E+IGRN R Q P T+R
Sbjct: 143 AFVVTDTRRFDAPIVYASPSFLKLTGYEEHEVIGRNCRFLQAPAGLIQRGHERLHTSREA 202
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPF 106
+ +R+ I ++ +V+++NY+KDG+ F
Sbjct: 203 VAHMRKNIVADKECQVSIINYRKDGSAF 230
>gi|302186038|ref|ZP_07262711.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
Length = 748
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 170 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRATLDVIREA 229
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ + R +EV LLN +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 230 LSQWRAVEVELLNTRKDGSKFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 280
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%)
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320
LP +VY + AFL +TG+ EV+G+ R L DT L I+E++ +A V +L
Sbjct: 182 LPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEDTSRATLDVIREALSQWRAVEVELL 241
Query: 321 NYRKDKSSFWNLLHISPIRNASG 343
N RKD S FW L I P+ N G
Sbjct: 242 NTRKDGSKFWVELSIVPVANEKG 264
>gi|163848652|ref|YP_001636696.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
gi|222526588|ref|YP_002571059.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
gi|163669941|gb|ABY36307.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
gi|222450467|gb|ACM54733.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
Length = 915
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 56/93 (60%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
S V++ PD P+ + + AF +TGY EV+G++C FL G TD + +I E+I
Sbjct: 45 SGVIVADAQPDYPITFVNRAFCTITGYAPEEVIGRHCLFLQGPGTDQAAVTRICEAIAAA 104
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ R+LNYRKD FW+ + ISP+R+ G+V
Sbjct: 105 RPVHERLLNYRKDGQPFWSQIAISPVRDDQGRV 137
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 41 HPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYK 100
+PI F +R F ++G++ E+IGR+ QGP T++ + I EAI RP+ LLNY+
Sbjct: 56 YPITFVNRAFCTITGYAPEEVIGRHCLFLQGPGTDQAAVTRICEAIAAARPVHERLLNYR 115
Query: 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
KDG PFW +S V + GR T F+ +Q + ++
Sbjct: 116 KDGQPFWSQIAISPV-RDDQGRVTAFIGLQTDVTAQ 150
>gi|422616286|ref|ZP_16684992.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str. M301072]
gi|443645188|ref|ZP_21129038.1| Sensory box/diguanylate cyclase(GGDEF)/phosphodiesterase(EAL)
domain protein [Pseudomonas syringae pv. syringae B64]
gi|330895802|gb|EGH28091.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str. M301072]
gi|443285205|gb|ELS44210.1| Sensory box/diguanylate cyclase(GGDEF)/phosphodiesterase(EAL)
domain protein [Pseudomonas syringae pv. syringae B64]
Length = 748
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 170 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEETSRATLDVIREA 229
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ R +EV LLN +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 230 LSHWRAVEVELLNTRKDGSKFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 280
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%)
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320
LP +VY + AFL +TG+ EV+G+ R L +T L I+E++ +A V +L
Sbjct: 182 LPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEETSRATLDVIREALSHWRAVEVELL 241
Query: 321 NYRKDKSSFWNLLHISPIRNASG 343
N RKD S FW L I P+ N G
Sbjct: 242 NTRKDGSKFWVELSIVPVANEKG 264
>gi|337280961|ref|YP_004620433.1| signal transduction protein [Ramlibacter tataouinensis TTB310]
gi|334732038|gb|AEG94414.1| signal transduction protein : sensor, PAS/PAC domains; regulator,
GGDEF/EAL domains-like protein [Ramlibacter
tataouinensis TTB310]
Length = 830
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 60/98 (61%), Gaps = 1/98 (1%)
Query: 40 GHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNY 99
G IVF + F +G+ R E++GR R+ QGP T R + +R+A+ E RP+ V+L+NY
Sbjct: 283 GPRIVFVNEAFETRTGYGRDEVLGRTPRLLQGPETQRDRLDRVRDALEEWRPVRVDLINY 342
Query: 100 KKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+K+G FW+ +S V+ K + TH+VAV + RK
Sbjct: 343 RKNGEAFWVDLDISPVWDKAR-KLTHWVAVGRDVTERK 379
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 52/84 (61%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILN 321
P +V+ ++AF TGY R+EV+G+ R L G +T L +++++++ + V ++N
Sbjct: 282 PGPRIVFVNEAFETRTGYGRDEVLGRTPRLLQGPETQRDRLDRVRDALEEWRPVRVDLIN 341
Query: 322 YRKDKSSFWNLLHISPIRNASGKV 345
YRK+ +FW L ISP+ + + K+
Sbjct: 342 YRKNGEAFWVDLDISPVWDKARKL 365
>gi|422665381|ref|ZP_16725253.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252]
gi|330975799|gb|EGH75865.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 748
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 170 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEETSRATLDVIREA 229
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ R +EV LLN +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 230 LSHWRAVEVELLNTRKDGSKFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 280
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%)
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320
LP +VY + AFL +TG+ EV+G+ R L +T L I+E++ +A V +L
Sbjct: 182 LPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEETSRATLDVIREALSHWRAVEVELL 241
Query: 321 NYRKDKSSFWNLLHISPIRNASG 343
N RKD S FW L I P+ N G
Sbjct: 242 NTRKDGSKFWVELSIVPVANEKG 264
>gi|289678106|ref|ZP_06498996.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5]
Length = 748
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 170 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEETSRATLDVIREA 229
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ R +EV LLN +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 230 LSHWRAVEVELLNTRKDGSKFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 280
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%)
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320
LP +VY + AFL +TG+ EV+G+ R L +T L I+E++ +A V +L
Sbjct: 182 LPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEETSRATLDVIREALSHWRAVEVELL 241
Query: 321 NYRKDKSSFWNLLHISPIRNASG 343
N RKD S FW L I P+ N G
Sbjct: 242 NTRKDGSKFWVELSIVPVANEKG 264
>gi|422629843|ref|ZP_16695045.1| PAS:GGDEF protein [Pseudomonas syringae pv. pisi str. 1704B]
gi|330939046|gb|EGH42502.1| PAS:GGDEF protein [Pseudomonas syringae pv. pisi str. 1704B]
Length = 748
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 170 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEETSRATLDVIREA 229
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ R +EV LLN +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 230 LSHWRAVEVELLNTRKDGSKFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 280
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%)
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320
LP +VY + AFL +TG+ EV+G+ R L +T L I+E++ +A V +L
Sbjct: 182 LPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEETSRATLDVIREALSHWRAVEVELL 241
Query: 321 NYRKDKSSFWNLLHISPIRNASG 343
N RKD S FW L I P+ N G
Sbjct: 242 NTRKDGSKFWVELSIVPVANEKG 264
>gi|388546160|ref|ZP_10149437.1| sensory box protein [Pseudomonas sp. M47T1]
gi|388275687|gb|EIK95272.1| sensory box protein [Pseudomonas sp. M47T1]
Length = 152
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 55/83 (66%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322
D ++Y + AF +LTGY NE++ Q+CRFL D D +VL I+++I Q C R+ N+
Sbjct: 27 DNILIYVNPAFERLTGYTANEILYQDCRFLQNGDRDESVLQLIRQAIDQGQPCRQRLRNF 86
Query: 323 RKDKSSFWNLLHISPIRNASGKV 345
RKD ++FWN L I+P+ N S K+
Sbjct: 87 RKDGTAFWNELSITPVYNESDKL 109
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ +D D + + + + +++ + F +++G++ EI+ ++ R Q + +
Sbjct: 7 LQRMMDASNDGIVVAEQEGNDNILIYVNPAFERLTGYTANEILYQDCRFLQNGDRDESVL 66
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
IR+AI + +P L N++KDGT FW ++ V+ + D + T+F+ +Q
Sbjct: 67 QLIRQAIDQGQPCRQRLRNFRKDGTAFWNELSITPVYNESD-KLTYFIGIQ 116
>gi|440720227|ref|ZP_20900646.1| PAS:GGDEF protein [Pseudomonas syringae BRIP34876]
gi|440726355|ref|ZP_20906609.1| PAS:GGDEF protein [Pseudomonas syringae BRIP34881]
gi|440366263|gb|ELQ03347.1| PAS:GGDEF protein [Pseudomonas syringae BRIP34876]
gi|440366516|gb|ELQ03595.1| PAS:GGDEF protein [Pseudomonas syringae BRIP34881]
Length = 748
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL ++GF+ E+IGR R+ Q T+R T+ IREA
Sbjct: 170 DAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEETSRATLDVIREA 229
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRK 137
+ R +EV LLN +KDG+ FW+ ++S+V E G TH+V+VQ I RK
Sbjct: 230 LSHWRAVEVELLNTRKDGSKFWV--ELSIVPVANEKGWFTHWVSVQRDITERK 280
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%)
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320
LP +VY + AFL +TG+ EV+G+ R L +T L I+E++ +A V +L
Sbjct: 182 LPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQCEETSRATLDVIREALSHWRAVEVELL 241
Query: 321 NYRKDKSSFWNLLHISPIRNASG 343
N RKD S FW L I P+ N G
Sbjct: 242 NTRKDGSKFWVELSIVPVANEKG 264
>gi|115401564|ref|XP_001216370.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114190311|gb|EAU32011.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 574
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 61/96 (63%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+ + F L DP PD P+++AS+ F + T Y + V+G+NCRFL G T+ + +I+E+I
Sbjct: 264 LAEVFCLTDPSRPDNPIIFASEEFHRTTQYGMDYVLGRNCRFLQGPKTNKNSVRRIREAI 323
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
Q + + LNYR+D S F NLL +P+ ++ G++
Sbjct: 324 QDGRHHSELFLNYRRDGSPFMNLLQCAPLCDSHGQI 359
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 25 DELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84
D L + F +TDPS +PI+FAS F + + + ++GRN R QGP+TN+ ++ IRE
Sbjct: 262 DGLAEVFCLTDPSRPDNPIIFASEEFHRTTQYGMDYVLGRNCRFLQGPKTNKNSVRRIRE 321
Query: 85 AIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
AI++ R LNY++DG+PF L + + + G+ +F+ Q+
Sbjct: 322 AIQDGRHHSELFLNYRRDGSPFMNLLQCAPLCDSH-GQIRYFIGAQI 367
>gi|399911275|ref|ZP_10779589.1| PAS/PAC and GAF sensor-containing diguanylate
cyclase/phosphodiesterase [Halomonas sp. KM-1]
Length = 1328
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+ I D G P+++ + F +++G+ R E++GR+ QG T+ + + +A+ E
Sbjct: 771 NGIVIADARAEGKPVIYVNEAFERITGYGRDEVLGRSCSFLQGSETDPEAVASMGKALAE 830
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R I V L NY+KDGTPFW ++ V E G THFV +Q I RK
Sbjct: 831 RREINVTLCNYRKDGTPFWNNLYLAPVRDGE-GTVTHFVGIQHDISERK 878
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 58/92 (63%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ D P++Y ++AF ++TGY R+EV+G++C FL G +TD + + +++ +
Sbjct: 773 IVIADARAEGKPVIYVNEAFERITGYGRDEVLGRSCSFLQGSETDPEAVASMGKALAERR 832
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
V + NYRKD + FWN L+++P+R+ G V
Sbjct: 833 EINVTLCNYRKDGTPFWNNLYLAPVRDGEGTV 864
>gi|255945463|ref|XP_002563499.1| Pc20g10050 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588234|emb|CAP86334.1| Pc20g10050 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 667
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 7/143 (4%)
Query: 204 AATAIDNILSVLTHYSQLTGRLVCGK-RCSLPGMGFISSSLYISLGRIKQSFVLIDPHLP 262
A TA + + + Y + G+LV + R +LP + + + F L DP P
Sbjct: 303 ALTAEELPAFITSTYINIAGKLVEERVRGTLP------DKFQGTAEALAEVFCLTDPSRP 356
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322
D P+++AS+ F + T Y + V+G+NCRFL G T+ + +I+E+++ + + +LNY
Sbjct: 357 DNPIIFASEEFHRNTQYGMDYVLGRNCRFLQGPKTNPNSVRRIREALKAGRYHSELLLNY 416
Query: 323 RKDKSSFWNLLHISPIRNASGKV 345
R+D S F NLL ISP+ + GK+
Sbjct: 417 RRDGSPFMNLLEISPLCDNRGKL 439
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 74/128 (57%), Gaps = 5/128 (3%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
EAL E+ F +TDPS +PI+FAS F + + + ++GRN R QGP+TN ++
Sbjct: 342 EALAEV---FCLTDPSRPDNPIIFASEEFHRNTQYGMDYVLGRNCRFLQGPKTNPNSVRR 398
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
IREA++ R LLNY++DG+PF L ++S + G+ +F+ Q+ VSR M
Sbjct: 399 IREALKAGRYHSELLLNYRRDGSPFMNLLEISPLCDNR-GKLRYFIGAQI-DVSRLVMEG 456
Query: 142 SGMSYSED 149
+ M +D
Sbjct: 457 AQMESLQD 464
>gi|149276757|ref|ZP_01882900.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
gi|149232426|gb|EDM37802.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
Length = 512
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 57/91 (62%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
V+ D LPD P++Y + AF +L+GY R+E++G+NCRFL D + I+ +I +
Sbjct: 27 VITDNLLPDNPIIYCNPAFEQLSGYSRDEIIGRNCRFLQSSDRSQQARFDIRAAIDAGEN 86
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
C V++ NY K F N L++S ++N SG+V
Sbjct: 87 CVVQVRNYTKTGVLFHNELYLSAVKNESGEV 117
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 32 TITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91
ITD + +PI++ + F ++SG+SR EIIGRN R Q +++ +IR AI
Sbjct: 27 VITDNLLPDNPIIYCNPAFEQLSGYSRDEIIGRNCRFLQSSDRSQQARFDIRAAIDAGEN 86
Query: 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
V + NY K G F +S V E G T+F+ +Q + +R
Sbjct: 87 CVVQVRNYTKTGVLFHNELYLSAV-KNESGEVTNFIGIQNDVSAR 130
>gi|448440113|ref|ZP_21588361.1| histidine kinase [Halorubrum saccharovorum DSM 1137]
gi|445690630|gb|ELZ42840.1| histidine kinase [Halorubrum saccharovorum DSM 1137]
Length = 475
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
L +P + P+ Y ++ F +LTGY EV+G++CR L G DTD I+E+I E+
Sbjct: 152 IALAEPGTGNNPLTYVNEEFERLTGYG-PEVLGKDCRLLQGEDTDPATTAAIREAIDDER 210
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+V ILNYR + FWN L ++PI + +G V+
Sbjct: 211 PVSVDILNYRANGKKFWNQLTVAPIHDETGDVI 243
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P + +P +P+ + + F +++G+ E++G++ R+ QG T+ T I
Sbjct: 144 AMDEAPVGIALAEPGTGNNPLTYVNEEFERLTGYG-PEVLGKDCRLLQGEDTDPATTAAI 202
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
REAI +ERP+ V++LNY+ +G FW ++ + E G FV Q I RK
Sbjct: 203 REAIDDERPVSVDILNYRANGKKFWNQLTVAPIH-DETGDVIRFVGFQTDITDRK 256
>gi|103486489|ref|YP_616050.1| LuxR family transcriptional regulator [Sphingopyxis alaskensis
RB2256]
gi|98976566|gb|ABF52717.1| transcriptional regulator, LuxR family [Sphingopyxis alaskensis
RB2256]
Length = 195
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 62/91 (68%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
V+ +PHLPD P+V +DAF LTGY +E++G+NCRFL G DT+ + +++ +I+ +A
Sbjct: 15 VISNPHLPDNPIVECNDAFAALTGYRPDEIIGRNCRFLTGPDTEPELSAELRRAIRDRRA 74
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
V ILNY+KD + F N + ++P+ G++
Sbjct: 75 ALVEILNYKKDGTRFRNAVLVAPLFGPDGEL 105
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR 87
P + I++P + +PIV + F ++G+ EIIGRN R GP T E+R AIR
Sbjct: 11 PIAAVISNPHLPDNPIVECNDAFAALTGYRPDEIIGRNCRFLTGPDTEPELSAELRRAIR 70
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+ R V +LNYKKDGT F ++ +FG DG +F+ Q+ +
Sbjct: 71 DRRAALVEILNYKKDGTRFRNAVLVAPLFGP-DGELEYFLGSQMEV 115
>gi|328850959|gb|EGG00118.1| hypothetical protein MELLADRAFT_118111 [Melampsora larici-populina
98AG31]
Length = 764
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L DSF +++P +P+V S GF ++G+ IIGRN R QGP+TN +I +R+ +
Sbjct: 402 LGDSFVLSNPRFRDNPVVIVSPGFAAVTGYDSKGIIGRNCRFLQGPKTNPNSIERLRKGL 461
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
+ P LLNY+ DGTPF L + +F ++ G T+++ QV +
Sbjct: 462 QAGEPCVELLLNYRSDGTPFQCLLTILPLFDQKGG-LTYYIGGQVNVT 508
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLY 303
Y LG SFVL +P D P+V S F +TGYD ++G+NCRFL G T+ +
Sbjct: 399 YSGLG---DSFVLSNPRFRDNPVVIVSPGFAAVTGYDSKGIIGRNCRFLQGPKTNPNSIE 455
Query: 304 QIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
++++ +Q + C +LNYR D + F LL I P+ + G
Sbjct: 456 RLRKGLQAGEPCVELLLNYRSDGTPFQCLLTILPLFDQKG 495
>gi|357976441|ref|ZP_09140412.1| LuxR family transcriptional regulator [Sphingomonas sp. KC8]
Length = 191
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 60/91 (65%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
+ V+ +P LPD P++ + AF LTGY R+E++G+NCRFL G T+ + +I +++ +
Sbjct: 8 AAVISNPRLPDNPIIECNAAFESLTGYRRDEIIGRNCRFLAGPRTEPGLTAEIVSAVREK 67
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+ V ILNY+KD + F N + ++PI + +G
Sbjct: 68 RPVLVEILNYKKDGTPFRNAVLVAPIFDGNG 98
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
+D + I++P + +PI+ + F ++G+ R EIIGRN R GPRT EI
Sbjct: 2 IDNSAVAAVISNPRLPDNPIIECNAAFESLTGYRRDEIIGRNCRFLAGPRTEPGLTAEIV 61
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
A+RE+RP+ V +LNYKKDGTPF ++ +F +G +F+ Q+ +
Sbjct: 62 SAVREKRPVLVEILNYKKDGTPFRNAVLVAPIFDG-NGDLEYFLGSQMEV 110
>gi|344943449|ref|ZP_08782736.1| putative signal transduction histidine kinase [Methylobacter
tundripaludum SV96]
gi|344260736|gb|EGW21008.1| putative signal transduction histidine kinase [Methylobacter
tundripaludum SV96]
Length = 738
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 66/110 (60%), Gaps = 3/110 (2%)
Query: 239 ISSSLYISLGRIKQS---FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295
+ LY+ I S V+ D D ++YA+ AFL++TGY E++G NCR +
Sbjct: 260 VEEKLYLMQHAIDSSSNGIVITDLGDADYAIIYANKAFLRMTGYSLQELLGHNCRIMQNN 319
Query: 296 DTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
D+D +++++ ++Q+++ + NYRKD S FWN ++ISPI++ G++
Sbjct: 320 DSDQEDIHELRAALQSKRDAHAILRNYRKDGSLFWNEIYISPIQDQQGRI 369
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+ A+D + ITD + + I++A++ FL+M+G+S E++G N R+ Q +++ I
Sbjct: 267 MQHAIDSSSNGIVITDLGDADYAIIYANKAFLRMTGYSLQELLGHNCRIMQNNDSDQEDI 326
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
E+R A++ +R L NY+KDG+ FW +S + ++ GR TH+V V + R M
Sbjct: 327 HELRAALQSKRDAHAILRNYRKDGSLFWNEIYISPIQDQQ-GRITHYVGVLNDVTHRVEM 385
Query: 140 RNS 142
++
Sbjct: 386 EDA 388
>gi|289208470|ref|YP_003460536.1| PAS/PAC sensor protein [Thioalkalivibrio sp. K90mix]
gi|288944101|gb|ADC71800.1| putative PAS/PAC sensor protein [Thioalkalivibrio sp. K90mix]
Length = 147
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D D I + + +++ +R F K++G+ EI+ R+ R QG T++ EI
Sbjct: 13 AVDASNDGVVIAEREGDDNILIYVNRAFEKLTGYRSEEILYRDCRFLQGDDTDQEARTEI 72
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
R AI+E RP V L NY+KDG+ FW ++ VF ED T+++ +Q I +R
Sbjct: 73 RAAIQENRPCRVTLRNYRKDGSLFWNELSLTPVFNDED-HLTYYIGIQKDITAR 125
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 53/86 (61%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
V+ + D ++Y + AF KLTGY E++ ++CRFL G DTD +I+ +IQ +
Sbjct: 22 VIAEREGDDNILIYVNRAFEKLTGYRSEEILYRDCRFLQGDDTDQEARTEIRAAIQENRP 81
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRN 340
C V + NYRKD S FWN L ++P+ N
Sbjct: 82 CRVTLRNYRKDGSLFWNELSLTPVFN 107
>gi|251772029|gb|EES52601.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
[Leptospirillum ferrodiazotrophum]
Length = 1594
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 58/84 (69%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322
D +++ +++F +TGY + EV G+N R L G T++ + +I+ +I+ E+ +ILNY
Sbjct: 940 DGKILFVNESFTTITGYSQEEVQGKNLRILQGEGTESKTVEEIRRAIEGERPFRGQILNY 999
Query: 323 RKDKSSFWNLLHISPIRNASGKVL 346
RKD S FWNLL ISP+R+ SG+++
Sbjct: 1000 RKDGSPFWNLLTISPVRDESGRLV 1023
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Query: 43 IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKD 102
I+F + F ++G+S+ E+ G+N R+ QG T +T+ EIR AI ERP +LNY+KD
Sbjct: 943 ILFVNESFTTITGYSQEEVQGKNLRILQGEGTESKTVEEIRRAIEGERPFRGQILNYRKD 1002
Query: 103 GTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
G+PFW L +S V E GR FV VQ
Sbjct: 1003 GSPFWNLLTISPV-RDESGRLVEFVGVQ 1029
>gi|218665621|ref|YP_002426126.1| sensory box-containing diguanylate cyclase [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|218517834|gb|ACK78420.1| sensory box-containing diguanylate cyclase, putative
[Acidithiobacillus ferrooxidans ATCC 23270]
gi|451311343|gb|AGF34148.1| sensory box-containing diguanylate cyclase [uncultured bacterium
DX-8J-22]
Length = 1057
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 51/84 (60%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILN 321
P ++Y + AFLKLTGY EV+G++C+FL TD + QI ++ EQ+ T ILN
Sbjct: 198 PQRHLIYVNQAFLKLTGYAMKEVLGRDCKFLQAPQTDAQTVRQIAIALAQEQSYTGDILN 257
Query: 322 YRKDKSSFWNLLHISPIRNASGKV 345
R D + FWN LHI P+ N G +
Sbjct: 258 QRNDGTLFWNRLHIDPVLNDQGAL 281
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Query: 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRT 78
++ +++ L D TI DP +++ ++ FLK++G++ E++GR+ + Q P+T+ +T
Sbjct: 181 FLRASVEALEDGVTIADPQ---RHLIYVNQAFLKLTGYAMKEVLGRDCKFLQAPQTDAQT 237
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+ +I A+ +E+ ++LN + DGT FW + V + G T F+ +Q I +
Sbjct: 238 VRQIAIALAQEQSYTGDILNQRNDGTLFWNRLHIDPVLNDQ-GALTGFIGLQRDITQERE 296
Query: 139 MRN 141
RN
Sbjct: 297 NRN 299
>gi|440684328|ref|YP_007159123.1| multi-sensor signal transduction histidine kinase [Anabaena
cylindrica PCC 7122]
gi|428681447|gb|AFZ60213.1| multi-sensor signal transduction histidine kinase [Anabaena
cylindrica PCC 7122]
Length = 1614
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 9/146 (6%)
Query: 198 DLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLI 257
DL + + I+S ++ Y+ +T R + + L +SS V+
Sbjct: 1218 DLRIDAIKDSTNKIVSFVSIYTDITQRKLIEEGLRLRDRAIAASS---------NGIVIA 1268
Query: 258 DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTV 317
D PD ++Y + AF ++TGY EV+GQN R L GVD L ++ ++Q Q CTV
Sbjct: 1269 DVTSPDSSIIYVNPAFERMTGYSAAEVMGQNFRLLQGVDIHQPGLQELSTAMQAGQDCTV 1328
Query: 318 RILNYRKDKSSFWNLLHISPIRNASG 343
+ NYR+D S FW L+ISP+ + G
Sbjct: 1329 ILRNYRQDGSLFWQELNISPVYDTDG 1354
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
+ I D + I++ + F +M+G+S AE++G+N R+ QG ++ + E+ A++
Sbjct: 1263 NGIVIADVTSPDSSIIYVNPAFERMTGYSAAEVMGQNFRLLQGVDIHQPGLQELSTAMQA 1322
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
+ V L NY++DG+ FW +S V+ DG TH++ +Q I +RK +
Sbjct: 1323 GQDCTVILRNYRQDGSLFWQELNISPVYDT-DGYLTHYIGIQTDITNRKQLEQ 1374
>gi|213406553|ref|XP_002174048.1| PAS family protein [Schizosaccharomyces japonicus yFS275]
gi|212002095|gb|EEB07755.1| PAS family protein [Schizosaccharomyces japonicus yFS275]
Length = 765
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 62/107 (57%), Gaps = 13/107 (12%)
Query: 245 ISLGRI--KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD------ 296
I LG + SF++ DP PD P++YAS F LTGY + E+VG+NCRFL D
Sbjct: 276 IQLGPVDLSCSFLVSDPRQPDCPIIYASSNFETLTGYTQQEIVGRNCRFLQSPDGKLSEG 335
Query: 297 -----TDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
TD +Y +K+ + E+ C V ++N++K++ F NL+ + P+
Sbjct: 336 EQRRFTDHCAVYYMKKCVLEEKECQVSLVNFKKNRQPFMNLVTLIPV 382
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 12/117 (10%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPR-----------TNRRT 78
SF ++DP PI++AS F ++G+++ EI+GRN R Q P T+
Sbjct: 286 SFLVSDPRQPDCPIIYASSNFETLTGYTQQEIVGRNCRFLQSPDGKLSEGEQRRFTDHCA 345
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
+ +++ + EE+ +V+L+N+KK+ PF L + V D + + Q+ +V+
Sbjct: 346 VYYMKKCVLEEKECQVSLVNFKKNRQPFMNLVTLIPVCWDSD-EISFIIGFQIDMVA 401
>gi|448407165|ref|ZP_21573592.1| bacterio-opsin activator [Halosimplex carlsbadense 2-9-1]
gi|445676378|gb|ELZ28901.1| bacterio-opsin activator [Halosimplex carlsbadense 2-9-1]
Length = 652
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 1/148 (0%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAE 60
+D+ + ++ F A+DE P TI D P+++ + F +++G+ A
Sbjct: 113 LDAAVAAGDRRFAEVTEQLKDRAMDEAPVGITIADGKRRDTPLIYVNDAFEQLAGYDEAN 172
Query: 61 IIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED 120
++GRN QG + I E+ AI E P+ V L+NY DG FW ++ + G ED
Sbjct: 173 VLGRNCNFMQGDESEEAKIAEMAAAIDEGDPVSVELVNYTDDGEQFWNRVHIAPIHG-ED 231
Query: 121 GRATHFVAVQVPIVSRKHMRNSGMSYSE 148
G TH+V Q + R +E
Sbjct: 232 GTVTHYVGFQEDVTDRVEAEREAQRQAE 259
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322
D P++Y +DAF +L GYD V+G+NC F+ G +++ + ++ +I +V ++NY
Sbjct: 152 DTPLIYVNDAFEQLAGYDEANVLGRNCNFMQGDESEEAKIAEMAAAIDEGDPVSVELVNY 211
Query: 323 RKDKSSFWNLLHISPIRNASGKV 345
D FWN +HI+PI G V
Sbjct: 212 TDDGEQFWNRVHIAPIHGEDGTV 234
>gi|260778950|ref|ZP_05887842.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
gi|260605114|gb|EEX31409.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
Length = 622
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 68/113 (60%), Gaps = 6/113 (5%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN-GRMFQGPRTNRRTIMEIREAIR 87
D+ +TDP G+ + + GF++++G+ EI G+ G + QGP TN + + + EAI+
Sbjct: 136 DAIVVTDPE--GYT-TWVNEGFVQLTGYQLDEIKGKKPGDILQGPNTNIKQVQALSEAIK 192
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140
+ + I+ L+NY KDGT +W+ MS+V +DG T FVAV+ I RK +
Sbjct: 193 QAKQIDCELINYSKDGTEYWI--DMSIVPVFKDGTLTRFVAVERDITERKQLE 243
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQN-CRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320
P+ + ++ F++LTGY +E+ G+ L G +T+ + + E+I+ + ++
Sbjct: 143 PEGYTTWVNEGFVQLTGYQLDEIKGKKPGDILQGPNTNIKQVQALSEAIKQAKQIDCELI 202
Query: 321 NYRKDKSSFWNLLHISPI 338
NY KD + +W + I P+
Sbjct: 203 NYSKDGTEYWIDMSIVPV 220
>gi|452207683|ref|YP_007487805.1| sensor box histidine kinase [Natronomonas moolapensis 8.8.11]
gi|452083783|emb|CCQ37110.1| sensor box histidine kinase [Natronomonas moolapensis 8.8.11]
Length = 1490
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
+A+D ITDP +PI + ++GF ++G+ A+++G N R GP T+ +
Sbjct: 655 EQAIDSSNVGVIITDPQREDNPIEYINKGFSDITGYQEADVVGCNPRFLHGPETDPEELS 714
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140
+REAI P+ V L NY+KDG+ +W ++ V DG + F+ +Q + +R+
Sbjct: 715 RLREAIAAGEPVTVELKNYRKDGSEYWNRLSVTPVTAA-DGTLSKFIGIQQDVTARRQRT 773
Query: 141 NS 142
S
Sbjct: 774 RS 775
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 55/91 (60%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
++ DP D P+ Y + F +TGY +VVG N RFL+G +TD L +++E+I +
Sbjct: 666 IITDPQREDNPIEYINKGFSDITGYQEADVVGCNPRFLHGPETDPEELSRLREAIAAGEP 725
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
TV + NYRKD S +WN L ++P+ A G +
Sbjct: 726 VTVELKNYRKDGSEYWNRLSVTPVTAADGTL 756
>gi|415963977|ref|ZP_11557939.1| sensory box-containing diguanylate cyclase, putative, partial
[Acidithiobacillus sp. GGI-221]
gi|339832962|gb|EGQ60840.1| sensory box-containing diguanylate cyclase, putative
[Acidithiobacillus sp. GGI-221]
Length = 677
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 51/84 (60%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILN 321
P ++Y + AFLKLTGY EV+G++C+FL TD + QI ++ EQ+ T ILN
Sbjct: 61 PQRHLIYVNQAFLKLTGYAMKEVLGRDCKFLQAPQTDAQTVRQIAIALAQEQSYTGDILN 120
Query: 322 YRKDKSSFWNLLHISPIRNASGKV 345
R D + FWN LHI P+ N G +
Sbjct: 121 QRNDGTLFWNRLHIDPVLNDQGAL 144
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 67/119 (56%), Gaps = 4/119 (3%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
+++ L D TI DP +++ ++ FLK++G++ E++GR+ + Q P+T+ +T+ +I
Sbjct: 48 SVEALEDGVTIADPQ---RHLIYVNQAFLKLTGYAMKEVLGRDCKFLQAPQTDAQTVRQI 104
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
A+ +E+ ++LN + DGT FW + V + G T F+ +Q I + RN
Sbjct: 105 AIALAQEQSYTGDILNQRNDGTLFWNRLHIDPVLNDQ-GALTGFIGLQRDITQERENRN 162
>gi|383760349|ref|YP_005439335.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax gelatinosus
IL144]
gi|381381019|dbj|BAL97836.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax gelatinosus
IL144]
Length = 877
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 57/89 (64%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
++ D LP P+ YA+ AF ++TGY +E +G+ C FL G D + L ++K++I+ Q+
Sbjct: 394 IICDMSLPGFPIFYANPAFGRITGYASDESIGRGCGFLQGEDREQPQLAELKQAIEQGQS 453
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASG 343
V + NYRKD + F+N L +SP+ NA G
Sbjct: 454 TQVVLRNYRKDGTLFFNELTVSPVPNAEG 482
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL+ + I D S+ G PI +A+ F +++G++ E IGR QG + + E+
Sbjct: 385 ALECTTNGVIICDMSLPGFPIFYANPAFGRITGYASDESIGRGCGFLQGEDREQPQLAEL 444
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140
++AI + + +V L NY+KDGT F+ +S V E G H+V V + R+ R
Sbjct: 445 KQAIEQGQSTQVVLRNYRKDGTLFFNELTVSPVPNAE-GAPQHYVGVLNDVTERERAR 501
>gi|126665177|ref|ZP_01736160.1| sensory box/GGDEF domain protein [Marinobacter sp. ELB17]
gi|126630547|gb|EBA01162.1| sensory box/GGDEF domain protein [Marinobacter sp. ELB17]
Length = 429
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 71/115 (61%), Gaps = 3/115 (2%)
Query: 23 ALDELPDSFTITDPS--ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
AL++ ++ +TD + GH IVFA++ FL+M+G++ E++GRN R+ QGP TN I
Sbjct: 16 ALEQSYNAVLLTDANSGAEGHRIVFANQAFLRMTGYNEEELLGRNPRLLQGPATNPDVID 75
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
+R + + + + +NY+KDG P+ + + +S V E G THF+++Q I S
Sbjct: 76 RLRHCLHDGTHFQGSTINYRKDGRPYTVEWNISPV-RNEAGEITHFISLQRDISS 129
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 49/80 (61%)
Query: 266 MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKD 325
+V+A+ AFL++TGY+ E++G+N R L G T+ V+ +++ + +NYRKD
Sbjct: 38 IVFANQAFLRMTGYNEEELLGRNPRLLQGPATNPDVIDRLRHCLHDGTHFQGSTINYRKD 97
Query: 326 KSSFWNLLHISPIRNASGKV 345
+ +ISP+RN +G++
Sbjct: 98 GRPYTVEWNISPVRNEAGEI 117
>gi|448500085|ref|ZP_21611564.1| histidine kinase [Halorubrum coriense DSM 10284]
gi|445696807|gb|ELZ48886.1| histidine kinase [Halorubrum coriense DSM 10284]
Length = 510
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322
D P+VY + F +LTGY +EV+G++CRFL G DT +I+ ++ E+ V ILNY
Sbjct: 198 DNPLVYCNRQFEELTGYG-DEVLGEDCRFLQGPDTGEESPAEIRAALDEERPVEVDILNY 256
Query: 323 RKDKSSFWNLLHISPIRNASGKV 345
R + FWN L I+P+R+A+G+V
Sbjct: 257 RANGQKFWNRLSIAPLRDATGEV 279
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 21 HEALDELPDSFTITDPSISG-HPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+A+DE P T+ + +P+V+ +R F +++G+ E++G + R QGP T +
Sbjct: 178 EQAMDEAPLGITLARATDGDDNPLVYCNRQFEELTGYG-DEVLGEDCRFLQGPDTGEESP 236
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
EIR A+ EERP+EV++LNY+ +G FW ++ + G T +V Q I RK
Sbjct: 237 AEIRAALDEERPVEVDILNYRANGQKFWNRLSIAPLRDAT-GEVTSYVGFQSDITERK 293
>gi|344942477|ref|ZP_08781764.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
SV96]
gi|344259764|gb|EGW20036.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
SV96]
Length = 1278
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 60/93 (64%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
S ++D + P MP++Y + AF ++TGY R+E +G+N RFL G +TD + +I+ +Q
Sbjct: 522 SISMVDVNKPGMPLIYVNPAFERITGYSRDEAIGRNPRFLQGKETDQPGVDEIRAVLQEG 581
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+A + NYRK+ + +WN L I+P+ + G++
Sbjct: 582 RAGGALLHNYRKNGTPYWNDLRIAPVHDEQGRL 614
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ S ++ D + G P+++ + F +++G+SR E IGRN R QG T++ + EI
Sbjct: 515 AVEASASSISMVDVNKPGMPLIYVNPAFERITGYSRDEAIGRNPRFLQGKETDQPGVDEI 574
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R ++E R L NY+K+GTP+W +++ V E GR +HF+ + + R+
Sbjct: 575 RAVLQEGRAGGALLHNYRKNGTPYWNDLRIAPVH-DEQGRLSHFIGIADDVTERR 628
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%)
Query: 266 MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKD 325
++Y +D F +++GY RNE+VGQN R + + + +I + N RKD
Sbjct: 410 LIYVNDRFCEISGYSRNELVGQNHRIVKSSEHLPEFYLDMWNTIVCGNIWRGEVCNRRKD 469
Query: 326 KSSFWNLLHISPIRNASGK 344
+W I P + +G+
Sbjct: 470 GRLYWVETSIVPFLDNTGR 488
>gi|242814453|ref|XP_002486372.1| GATA transcription factor LreA [Talaromyces stipitatus ATCC 10500]
gi|218714711|gb|EED14134.1| GATA transcription factor LreA [Talaromyces stipitatus ATCC 10500]
Length = 960
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 245 ISLGRIKQS--FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD------ 296
I +G + S F+L D D P++Y SDAF +LTGY R+E++G+NCRFL D
Sbjct: 333 IDIGAVDMSCAFILCDITSHDDPIIYVSDAFERLTGYTRHEILGRNCRFLQSPDGKVDPG 392
Query: 297 -----TDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
D +Y++KE IQ V ++NYRK SF NLL + PI
Sbjct: 393 TKRKYVDNQTVYRLKEKIQARAEVQVSMINYRKGGQSFMNLLTMIPI 439
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 17/133 (12%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP-----------RTNRRT 78
+F + D + PI++ S F +++G++R EI+GRN R Q P + +T
Sbjct: 343 AFILCDITSHDDPIIYVSDAFERLTGYTRHEILGRNCRFLQSPDGKVDPGTKRKYVDNQT 402
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPFWMLFKM-SLVFGKEDGRATHFVAVQVPIVSRK 137
+ ++E I+ ++V+++NY+K G F L M + + D R +V QV +V +
Sbjct: 403 VYRLKEKIQARAEVQVSMINYRKGGQSFMNLLTMIPINWNSTDYR--FYVGFQVDLVEQP 460
Query: 138 HM---RNSGMSYS 147
H RN+ SYS
Sbjct: 461 HAVTKRNADGSYS 473
>gi|427720455|ref|YP_007068449.1| multi-sensor signal transduction histidine kinase [Calothrix sp.
PCC 7507]
gi|427352891|gb|AFY35615.1| multi-sensor signal transduction histidine kinase [Calothrix sp.
PCC 7507]
Length = 1083
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 58/92 (63%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ID + D P++Y + AF ++TGY EV+GQ+ R+L D L Q+ ++QT Q
Sbjct: 740 IVIIDVRMQDEPIIYVNPAFERMTGYCAAEVIGQSRRWLQHADIKQPELQQLSTAMQTGQ 799
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
CTV + N RKD S FWN L+ISP+ + G++
Sbjct: 800 DCTVILRNSRKDGSLFWNQLNISPVCDVDGEL 831
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 2/125 (1%)
Query: 18 LWVHE-ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNR 76
LW+ + A+ + I D + PI++ + F +M+G+ AE+IG++ R Q +
Sbjct: 726 LWLRDRAIAASSNGIVIIDVRMQDEPIIYVNPAFERMTGYCAAEVIGQSRRWLQHADIKQ 785
Query: 77 RTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+ ++ A++ + V L N +KDG+ FW +S V DG TH++ +Q I R
Sbjct: 786 PELQQLSTAMQTGQDCTVILRNSRKDGSLFWNQLNISPVCDV-DGELTHYIGIQTDITER 844
Query: 137 KHMRN 141
K +
Sbjct: 845 KQLEK 849
>gi|448465905|ref|ZP_21598953.1| histidine kinase [Halorubrum kocurii JCM 14978]
gi|445814843|gb|EMA64800.1| histidine kinase [Halorubrum kocurii JCM 14978]
Length = 493
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
L +P + P+ Y ++ F +LTGY E++G++CRFL G T+ + I+E+I E+
Sbjct: 170 ITLAEPGSENKPLTYVNEEFERLTGYG-PEMLGKDCRFLQGEGTNPETVATIREAIDDER 228
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+V ILNYR + FWN L ++PIR+ +G V+
Sbjct: 229 PVSVDILNYRANGQKFWNQLTVAPIRDETGAVI 261
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P T+ +P P+ + + F +++G+ E++G++ R QG TN T+ I
Sbjct: 162 AMDEAPVGITLAEPGSENKPLTYVNEEFERLTGYG-PEMLGKDCRFLQGEGTNPETVATI 220
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
REAI +ERP+ V++LNY+ +G FW ++ + E G +V Q I RK
Sbjct: 221 REAIDDERPVSVDILNYRANGQKFWNQLTVAPIR-DETGAVIRYVGFQTDITERK 274
>gi|408675683|ref|YP_006875431.1| PAS/PAC sensor signal transduction histidine kinase [Emticicia
oligotrophica DSM 17448]
gi|387857307|gb|AFK05404.1| PAS/PAC sensor signal transduction histidine kinase [Emticicia
oligotrophica DSM 17448]
Length = 1719
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 68/111 (61%), Gaps = 4/111 (3%)
Query: 29 DSFTITDPSISGHP---IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+P P I++A++ F KM+G+ EIIG+ R+ QGP+++ + + + +A
Sbjct: 1144 DAILITEPEPFDEPGPKIMYANKAFTKMTGYEVEEIIGKTPRILQGPKSDFKELARLSQA 1203
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+R+ EV+ +NYKK+G FW+ F ++ V E G TH++A++ I +
Sbjct: 1204 LRKWESCEVSTINYKKNGEEFWVNFTVTPV-ANEKGWFTHWIAIERDITEK 1253
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Query: 253 SFVLIDPHLPDMP---MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+ ++ +P D P ++YA+ AF K+TGY+ E++G+ R L G +D L ++ +++
Sbjct: 1145 AILITEPEPFDEPGPKIMYANKAFTKMTGYEVEEIIGKTPRILQGPKSDFKELARLSQAL 1204
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+ ++C V +NY+K+ FW ++P+ N G
Sbjct: 1205 RKWESCEVSTINYKKNGEEFWVNFTVTPVANEKG 1238
>gi|402074184|gb|EJT69713.1| hypothetical protein GGTG_12596 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 837
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 4/150 (2%)
Query: 196 ASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFV 255
A+ E A A D++ + +TH T + KR + G + L + + F
Sbjct: 268 ATRAEAAFEALARDDMPAYITHVWIQTVSVSIKKRIT----GTLPPHLREMSEGLAEVFC 323
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315
L DP D P+V+AS+ F + T Y + V+G+NCRFL G T+ + ++ E I + C
Sbjct: 324 LTDPSRHDNPIVFASEEFHRTTQYGMSYVLGRNCRFLQGPKTNPNSVKRLAEKIHAGKEC 383
Query: 316 TVRILNYRKDKSSFWNLLHISPIRNASGKV 345
LNYR+D S F NLL ++P+ ++ G V
Sbjct: 384 FETFLNYRRDGSPFMNLLMVAPLYDSRGAV 413
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 17 TLWVH--EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
TL H E + L + F +TDPS +PIVFAS F + + + + ++GRN R QGP+T
Sbjct: 306 TLPPHLREMSEGLAEVFCLTDPSRHDNPIVFASEEFHRTTQYGMSYVLGRNCRFLQGPKT 365
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
N ++ + E I + LNY++DG+PF L ++ ++ G +F+ QV
Sbjct: 366 NPNSVKRLAEKIHAGKECFETFLNYRRDGSPFMNLLMVAPLYDSR-GAVRYFIGAQV 421
>gi|357024972|ref|ZP_09087108.1| signal transduction histidine kinase [Mesorhizobium amorphae
CCNWGS0123]
gi|355543190|gb|EHH12330.1| signal transduction histidine kinase [Mesorhizobium amorphae
CCNWGS0123]
Length = 350
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 53/96 (55%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ + V D P P+++A+DAFL LTGYDR EV+GQ FL D L +IK +
Sbjct: 36 RMAMVFADAKEPGNPIIFANDAFLALTGYDREEVLGQPFNFLMADGADAGALKRIKAEFE 95
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ IL RKD S FW L +P+R+ SG ++
Sbjct: 96 ANSEASTEILYRRKDGSEFWAALFANPVRDRSGAIV 131
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
+ D G+PI+FA+ FL ++G+ R E++G+ + + I+
Sbjct: 38 AMVFADAKEPGNPIIFANDAFLALTGYDREEVLGQPFNFLMADGADAGALKRIKAEFEAN 97
Query: 90 RPIEVNLLNYKKDGTPFW 107
+L +KDG+ FW
Sbjct: 98 SEASTEILYRRKDGSEFW 115
>gi|319954539|ref|YP_004165806.1| pas/pac sensor signal transduction histidine kinase [Cellulophaga
algicola DSM 14237]
gi|319423199|gb|ADV50308.1| PAS/PAC sensor signal transduction histidine kinase [Cellulophaga
algicola DSM 14237]
Length = 628
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 57/89 (64%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
V+ D PD P++Y + +FL LTGY E +G+NCRFL G D + + ++ +I+ ++
Sbjct: 147 VISDALKPDNPIIYCNTSFLTLTGYSEEETIGKNCRFLQGNDKNQECITNMRNAIKNGKS 206
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASG 343
+ NY+KD + F+N L+I+PIR+ SG
Sbjct: 207 SQAIVRNYKKDGTLFYNDLYITPIRDKSG 235
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
EAL + I+D +PI++ + FL ++G+S E IG+N R QG N+ I
Sbjct: 137 EALQSASNGIVISDALKPDNPIIYCNTSFLTLTGYSEEETIGKNCRFLQGNDKNQECITN 196
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+R AI+ + + + NYKKDGT F+ ++ + K G T+++ +Q + R
Sbjct: 197 MRNAIKNGKSSQAIVRNYKKDGTLFYNDLYITPIRDK-SGLITNYIGIQNDVTER 250
>gi|255318187|ref|ZP_05359426.1| two-component response regulator [Acinetobacter radioresistens
SK82]
gi|262379605|ref|ZP_06072761.1| two-component response regulator [Acinetobacter radioresistens
SH164]
gi|255304733|gb|EET83911.1| two-component response regulator [Acinetobacter radioresistens
SK82]
gi|262299062|gb|EEY86975.1| two-component response regulator [Acinetobacter radioresistens
SH164]
Length = 855
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Query: 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR 87
P+ ITD + + IV+ + FL M+G++ +++G+ QGP T I +++A++
Sbjct: 309 PNGIIITDAT-AERKIVYVNPAFLHMTGYTEEDVMGKTCHFLQGPETEAEKIALVQQALK 367
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
E + I+V + NY+KDG+ FW + VF E GR THF+ +Q I ++
Sbjct: 368 EHKEIQVTVKNYRKDGSWFWNRLMLGPVF-DEAGRCTHFLGIQEDITQQR 416
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 54/90 (60%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
++I + +VY + AFL +TGY +V+G+ C FL G +T+ + ++++++ +
Sbjct: 312 IIITDATAERKIVYVNPAFLHMTGYTEEDVMGKTCHFLQGPETEAEKIALVQQALKEHKE 371
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGK 344
V + NYRKD S FWN L + P+ + +G+
Sbjct: 372 IQVTVKNYRKDGSWFWNRLMLGPVFDEAGR 401
>gi|421465104|ref|ZP_15913792.1| PAS domain S-box protein [Acinetobacter radioresistens WC-A-157]
gi|400204366|gb|EJO35350.1| PAS domain S-box protein [Acinetobacter radioresistens WC-A-157]
Length = 855
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Query: 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR 87
P+ ITD + + IV+ + FL M+G++ +++G+ QGP T I +++A++
Sbjct: 309 PNGIIITDAT-AERKIVYVNPAFLHMTGYTEEDVMGKTCHFLQGPETEAEKIALVQQALK 367
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
E + I+V + NY+KDG+ FW + VF E GR THF+ +Q I ++
Sbjct: 368 EHKEIQVTVKNYRKDGSWFWNRLMLGPVF-DEAGRCTHFLGIQEDITQQR 416
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 54/90 (60%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
++I + +VY + AFL +TGY +V+G+ C FL G +T+ + ++++++ +
Sbjct: 312 IIITDATAERKIVYVNPAFLHMTGYTEEDVMGKTCHFLQGPETEAEKIALVQQALKEHKE 371
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGK 344
V + NYRKD S FWN L + P+ + +G+
Sbjct: 372 IQVTVKNYRKDGSWFWNRLMLGPVFDEAGR 401
>gi|403166863|ref|XP_003889942.1| hypothetical protein PGTG_21385 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166743|gb|EHS63235.1| hypothetical protein PGTG_21385 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 612
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 70/123 (56%), Gaps = 3/123 (2%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
E L DSF +T+P + +P+V S F +G R IIG+N R QGP T+ ++I
Sbjct: 354 ETCQGLGDSFCVTNPRLRDNPVVMVSPSFSATTGHDRHLIIGKNCRFLQGPGTSPQSIQR 413
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
+R+A+++ P LLNYK DGTPF+ L + +F E G ++++ Q+ + +RN
Sbjct: 414 LRQALKQGLPSVELLLNYKADGTPFYCLLSIIPLFD-EKGFLSYYIGGQINVTD--ELRN 470
Query: 142 SGM 144
+ +
Sbjct: 471 NQL 473
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 54/91 (59%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
SF + +P L D P+V S +F TG+DR+ ++G+NCRFL G T + +++++++
Sbjct: 362 SFCVTNPRLRDNPVVMVSPSFSATTGHDRHLIIGKNCRFLQGPGTSPQSIQRLRQALKQG 421
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+LNY+ D + F+ LL I P+ + G
Sbjct: 422 LPSVELLLNYKADGTPFYCLLSIIPLFDEKG 452
>gi|443473793|ref|ZP_21063814.1| diguanylate cyclase/phosphodiesterase [Pseudomonas
pseudoalcaligenes KF707]
gi|442904728|gb|ELS29643.1| diguanylate cyclase/phosphodiesterase [Pseudomonas
pseudoalcaligenes KF707]
Length = 1245
Score = 81.3 bits (199), Expect = 6e-13, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 76/133 (57%), Gaps = 3/133 (2%)
Query: 214 VLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQS---FVLIDPHLPDMPMVYAS 270
+LT + L GR + R +L I L ++ ++ S + D P+ P++Y +
Sbjct: 266 LLTMSTLLVGRSLSDLRLALSRRDEIQQELALTNLALRASPLGVTIADARQPEQPLIYCN 325
Query: 271 DAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFW 330
AF +++GY R+E +G N RFL D + + L ++++++Q + C + + NYRKD S FW
Sbjct: 326 PAFERMSGYSRDEALGNNWRFLLHHDRNQSELPRLQDALQRGEQCNLVLRNYRKDGSLFW 385
Query: 331 NLLHISPIRNASG 343
N + ++P+R+A G
Sbjct: 386 NEITVAPMRDAQG 398
Score = 60.5 bits (145), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL P TI D P+++ + F +MSG+SR E +G N R N+ + +
Sbjct: 301 ALRASPLGVTIADARQPEQPLIYCNPAFERMSGYSRDEALGNNWRFLLHHDRNQSELPRL 360
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
++A++ + L NY+KDG+ FW ++++ ++ +HFVA+Q VSR+ M
Sbjct: 361 QDALQRGEQCNLVLRNYRKDGSLFWN--EITVAPMRDAQGVSHFVALQHD-VSRREM 414
>gi|372272915|ref|ZP_09508963.1| hypothetical protein MstaS_17619 [Marinobacterium stanieri S30]
Length = 690
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 75/132 (56%), Gaps = 2/132 (1%)
Query: 16 YTLWVHEALDELPDSFTITDPSISGHP-IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
+ L++ +LD L D +TD + P IV+ ++ + +G+SR ++G++ R FQGP+T
Sbjct: 12 HLLFMQASLDHLSDLVIVTDTDLEAGPSIVYVNQAVVNRTGYSREYLLGKSPRTFQGPKT 71
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134
+ + I EA+ ++R + L+NY + G P+W+ + + + G+ THFV+ Q I
Sbjct: 72 DPKARKRISEALHQQREVREELINYTRAGEPYWVEVCIRPLRDAQ-GQHTHFVSTQRDIT 130
Query: 135 SRKHMRNSGMSY 146
RK + + M +
Sbjct: 131 ERKKIESDLMLF 142
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMP-MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
+ SL + ++ D L P +VY + A + TGY R ++G++ R G TD
Sbjct: 16 MQASLDHLSDLVIVTDTDLEAGPSIVYVNQAVVNRTGYSREYLLGKSPRTFQGPKTDPKA 75
Query: 302 LYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGK 344
+I E++ ++ ++NY + +W + I P+R+A G+
Sbjct: 76 RKRISEALHQQREVREELINYTRAGEPYWVEVCIRPLRDAQGQ 118
>gi|94498632|ref|ZP_01305185.1| transcriptional regulator, LuxR family protein [Sphingomonas sp.
SKA58]
gi|94421927|gb|EAT06975.1| transcriptional regulator, LuxR family protein [Sphingomonas sp.
SKA58]
Length = 238
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 56/91 (61%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
++ DP D P++ + AFL LTGY R EV+G+NCRF+ G T+ + QI+ +I +
Sbjct: 59 LICDPSTADTPVIECNSAFLALTGYRREEVIGRNCRFMRGAGTEPELTGQIRAAISDRRP 118
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
V ILNY+K + F N + I+PI + SG +
Sbjct: 119 ILVEILNYKKGGAPFRNAVLIAPIFDDSGTL 149
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 51/89 (57%)
Query: 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR 87
P + I DPS + P++ + FL ++G+ R E+IGRN R +G T +IR AI
Sbjct: 55 PIAALICDPSTADTPVIECNSAFLALTGYRREEVIGRNCRFMRGAGTEPELTGQIRAAIS 114
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVF 116
+ RPI V +LNYKK G PF ++ +F
Sbjct: 115 DRRPILVEILNYKKGGAPFRNAVLIAPIF 143
>gi|428319417|ref|YP_007117299.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Oscillatoria nigro-viridis PCC 7112]
gi|428243097|gb|AFZ08883.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Oscillatoria nigro-viridis PCC 7112]
Length = 1344
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 71/130 (54%), Gaps = 1/130 (0%)
Query: 8 IEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGR 67
IE+ + + A++ + ITD +++ +PI++ + F +++G+ R E++G+N R
Sbjct: 333 IERIISQERLQMMERAIESCSNGIAITDATVADNPIIYVNPSFERITGYRRDELMGKNCR 392
Query: 68 MFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
Q T+ ++R AI E R +V L N++KDGTPFW ++ V+ THF+
Sbjct: 393 FLQDTDTDSPAAKQLRIAIEEGRESQVILRNFRKDGTPFWHELSIAPVYNSRR-HLTHFI 451
Query: 128 AVQVPIVSRK 137
VQ I R+
Sbjct: 452 GVQTDITDRQ 461
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 57/88 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ D + D P++Y + +F ++TGY R+E++G+NCRFL DTD+ Q++ +I+ +
Sbjct: 356 IAITDATVADNPIIYVNPSFERITGYRRDELMGKNCRFLQDTDTDSPAAKQLRIAIEEGR 415
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNA 341
V + N+RKD + FW+ L I+P+ N+
Sbjct: 416 ESQVILRNFRKDGTPFWHELSIAPVYNS 443
>gi|398336905|ref|ZP_10521610.1| histidine kinase sensor protein [Leptospira kmetyi serovar Malaysia
str. Bejo-Iso9]
Length = 739
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 73/115 (63%), Gaps = 3/115 (2%)
Query: 24 LDELPDSFTITDPSIS--GHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
++++ DS +TD S+ G I+FA+ F KM+G+ +E+IG+N R+FQGP TNR+ + +
Sbjct: 19 VNQISDSILVTDASLEPPGPKIIFANPAFCKMTGYQSSELIGQNPRIFQGPLTNRKVLGD 78
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
++ ++ + R +NYKKDGTP+ + ++S + +G +F+++Q I +
Sbjct: 79 LKRSLAQGRDFSGEAVNYKKDGTPYNVELQVSAI-RDANGIVLYFISIQRDITEK 132
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 63/110 (57%), Gaps = 3/110 (2%)
Query: 240 SSSLY-ISLGRIKQSFVLIDPHL--PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
S LY I + +I S ++ D L P +++A+ AF K+TGY +E++GQN R G
Sbjct: 11 SQELYEILVNQISDSILVTDASLEPPGPKIIFANPAFCKMTGYQSSELIGQNPRIFQGPL 70
Query: 297 TDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
T+ VL +K S+ + + +NY+KD + + L +S IR+A+G VL
Sbjct: 71 TNRKVLGDLKRSLAQGRDFSGEAVNYKKDGTPYNVELQVSAIRDANGIVL 120
>gi|134095595|ref|YP_001100670.1| hypothetical protein HEAR2418 [Herminiimonas arsenicoxydans]
gi|133739498|emb|CAL62549.1| Hypothetical protein, PAS and GGDEF domain [Herminiimonas
arsenicoxydans]
Length = 313
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 57/93 (61%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ D PD P+++A+ AF +L+GYD +++G+NCRFL G D + + S++
Sbjct: 15 RDGILIADARAPDHPVIFANPAFEQLSGYDLEDILGRNCRFLQGTDQAQRNISILANSLE 74
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+ V + NYRKD S FWN L ISP+ + SG
Sbjct: 75 KGKHSIVTLRNYRKDGSLFWNELSISPVFDQSG 107
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+A+ E D I D HP++FA+ F ++SG+ +I+GRN R QG +R I
Sbjct: 9 QAVMESRDGILIADARAPDHPVIFANPAFEQLSGYDLEDILGRNCRFLQGTDQAQRNISI 68
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+ ++ + + V L NY+KDG+ FW +S VF + G THF+ +Q + +R
Sbjct: 69 LANSLEKGKHSIVTLRNYRKDGSLFWNELSISPVF-DQSGVLTHFIGIQKDVTAR 122
>gi|357406211|ref|YP_004918135.1| Multi-sensor hybrid histidine kinase (modular protein)
[Methylomicrobium alcaliphilum 20Z]
gi|351718876|emb|CCE24550.1| Multi-sensor hybrid histidine kinase (modular protein)
[Methylomicrobium alcaliphilum 20Z]
Length = 1418
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 55/92 (59%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ D + DMP+++ + AF ++TGY R E++G+NCRFLN D L ++ ++ +
Sbjct: 532 IVIADANQHDMPLIFTNKAFERITGYPREEILGKNCRFLNNNDRHQPGLDHVRSALSKGE 591
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ NYRKD S FWN L I+P+ + G +
Sbjct: 592 KVETVLRNYRKDGSMFWNELRIAPVHDEQGNL 623
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
I D + P++F ++ F +++G+ R EI+G+N R ++ + +R A+ +
Sbjct: 532 IVIADANQHDMPLIFTNKAFERITGYPREEILGKNCRFLNNNDRHQPGLDHVRSALSKGE 591
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAV 129
+E L NY+KDG+ FW +++ V E G THF+ +
Sbjct: 592 KVETVLRNYRKDGSMFWNELRIAPVH-DEQGNLTHFIGI 629
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%)
Query: 266 MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKD 325
+ Y +D F +++GY R E++GQN R + + + + E+I + I N RKD
Sbjct: 419 ITYINDKFCEISGYRREELIGQNHRIVKSGEHSPEFYHDLWETIAGGRVWQGEICNRRKD 478
Query: 326 KSSFWNLLHISPIRNASGK 344
S +W I+P ++GK
Sbjct: 479 GSLYWVESTITPFLGSNGK 497
Score = 40.8 bits (94), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 43 IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKD 102
I + + F ++SG+ R E+IG+N R+ + + ++ E I R + + N +KD
Sbjct: 419 ITYINDKFCEISGYRREELIGQNHRIVKSGEHSPEFYHDLWETIAGGRVWQGEICNRRKD 478
Query: 103 GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
G+ +W+ ++ G +G+ +V+++ I H++ S
Sbjct: 479 GSLYWVESTITPFLGS-NGKPYQYVSIRTDI---SHVKKS 514
>gi|443317279|ref|ZP_21046694.1| PAS domain S-box [Leptolyngbya sp. PCC 6406]
gi|442783098|gb|ELR93023.1| PAS domain S-box [Leptolyngbya sp. PCC 6406]
Length = 924
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 73/124 (58%), Gaps = 5/124 (4%)
Query: 29 DSFTITDPSISGHP---IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ P I++ ++ F + +G+S E++G+ R+FQG +T+R + +R +
Sbjct: 428 DAVLITEAEPIDEPGPRILYVNKAFTRTTGYSLEEVVGKTPRIFQGSKTDRAVLDIVRAS 487
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMS 145
+ E RP+ ++NY+KDG+ FW+ F + V + G TH++AVQ I RK + +
Sbjct: 488 LLEWRPVTAEVINYRKDGSEFWVEFSIVPVADR-TGYYTHWIAVQRDITERKRIEQE-LR 545
Query: 146 YSED 149
+SE+
Sbjct: 546 WSEE 549
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILN 321
P ++Y + AF + TGY EVVG+ R G TD VL ++ S+ + T ++N
Sbjct: 441 PGPRILYVNKAFTRTTGYSLEEVVGKTPRIFQGSKTDRAVLDIVRASLLEWRPVTAEVIN 500
Query: 322 YRKDKSSFWNLLHISPIRNASG 343
YRKD S FW I P+ + +G
Sbjct: 501 YRKDGSEFWVEFSIVPVADRTG 522
>gi|254435896|ref|ZP_05049403.1| PAS domain S-box, putative [Nitrosococcus oceani AFC27]
gi|207089007|gb|EDZ66279.1| PAS domain S-box, putative [Nitrosococcus oceani AFC27]
Length = 147
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+ LD + ++TDP +P+++ + F K++G+ + EI+G+N R+ QG ++
Sbjct: 18 QILDSCVNGISLTDPDQEDNPLIYVNEAFEKITGYKKEEILGKNCRILQGNDRDQEGSRR 77
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+REAI++ P+EV+L NYKK+G F+ ++ VF +E G +F+ VQ + +
Sbjct: 78 VREAIQKRVPVEVDLKNYKKNGELFYNHLAINPVFDQE-GNLLYFLGVQYDVTKQ 131
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 60/110 (54%)
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G I L L L DP D P++Y ++AF K+TGY + E++G+NCR L G D
Sbjct: 10 GLIPRVLSQILDSCVNGISLTDPDQEDNPLIYVNEAFEKITGYKKEEILGKNCRILQGND 69
Query: 297 TDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
D +++E+IQ V + NY+K+ F+N L I+P+ + G +L
Sbjct: 70 RDQEGSRRVREAIQKRVPVEVDLKNYKKNGELFYNHLAINPVFDQEGNLL 119
>gi|389627554|ref|XP_003711430.1| hypothetical protein MGG_07517 [Magnaporthe oryzae 70-15]
gi|351643762|gb|EHA51623.1| hypothetical protein MGG_07517 [Magnaporthe oryzae 70-15]
Length = 788
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 7/165 (4%)
Query: 184 DDTGLEIEDSCEASDLEKRKAA---TAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFIS 240
D TG E+ + S ++ AA A D++ + +TH T + KR + G +
Sbjct: 277 DFTGHEVMATINESLRQRADAAFEALARDDLPAYITHVWTQTVSISIRKRIT----GTLP 332
Query: 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTT 300
L + + F L DP D P+V+AS+ F + T Y N V+G+NCRFL G T+
Sbjct: 333 PHLREMSEGLAEVFCLTDPSRHDNPIVFASEEFHRTTQYGMNYVLGRNCRFLQGPKTNPF 392
Query: 301 VLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +IKE + + LNYR+D S F NLL ++P+ ++ G V
Sbjct: 393 SVKRIKEKVLAGKEHFETFLNYRRDGSPFMNLLMVAPLYDSRGAV 437
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 17 TLWVH--EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
TL H E + L + F +TDPS +PIVFAS F + + + ++GRN R QGP+T
Sbjct: 330 TLPPHLREMSEGLAEVFCLTDPSRHDNPIVFASEEFHRTTQYGMNYVLGRNCRFLQGPKT 389
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
N ++ I+E + + LNY++DG+PF L ++ ++ G +F+ QV
Sbjct: 390 NPFSVKRIKEKVLAGKEHFETFLNYRRDGSPFMNLLMVAPLYDSR-GAVRYFIGAQV 445
>gi|297592077|gb|ADI46862.1| AMPKR1f [Volvox carteri f. nagariensis]
Length = 859
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 68/127 (53%), Gaps = 3/127 (2%)
Query: 14 NRYTL---WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQ 70
N +TL + A++ + S T++DP G+P+ + S GFL M+G++ E +GRN + Q
Sbjct: 79 NSFTLEDESLSAAMESILSSLTVSDPHEEGNPLCYVSPGFLSMTGYNEDECLGRNCKFLQ 138
Query: 71 GPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
+ + T +R AI E R V + N++K G PF L + VFG++ HFV V
Sbjct: 139 DGKLDPSTHEALRSAISERRFATVEVTNFRKGGRPFQNLLSLLPVFGEDGASLLHFVGVH 198
Query: 131 VPIVSRK 137
+ R+
Sbjct: 199 CDLDERR 205
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 231 CSLP----GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVG 286
CSLP SL ++ I S + DPH P+ Y S FL +TGY+ +E +G
Sbjct: 72 CSLPPKENSFTLEDESLSAAMESILSSLTVSDPHEEGNPLCYVSPGFLSMTGYNEDECLG 131
Query: 287 QNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+NC+FL D + ++ +I + TV + N+RK F NLL + P+ G L
Sbjct: 132 RNCKFLQDGKLDPSTHEALRSAISERRFATVEVTNFRKGGRPFQNLLSLLPVFGEDGASL 191
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 47 SRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106
S GF ++G+S++E++G N GP T + + ++ + + V +L YK+DGTPF
Sbjct: 233 SPGFTALTGYSQSEVMGWNMLCLCGPETAEKEMRKLITSQWAHSSVAVKMLCYKRDGTPF 292
Query: 107 WML 109
W L
Sbjct: 293 WAL 295
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 260 HL-PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVR 318
HL P + S F LTGY ++EV+G N L G +T + ++ S + V+
Sbjct: 222 HLRPSAALCAVSPGFTALTGYSQSEVMGWNMLCLCGPETAEKEMRKLITSQWAHSSVAVK 281
Query: 319 ILNYRKDKSSFWNLLHISPIRNA 341
+L Y++D + FW L+ P+ ++
Sbjct: 282 MLCYKRDGTPFWALVLSCPLSSS 304
>gi|440468936|gb|ELQ38063.1| hypothetical protein OOU_Y34scaffold00552g17 [Magnaporthe oryzae
Y34]
gi|440480560|gb|ELQ61219.1| hypothetical protein OOW_P131scaffold01198g51 [Magnaporthe oryzae
P131]
Length = 805
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 7/165 (4%)
Query: 184 DDTGLEIEDSCEASDLEKRKAA---TAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFIS 240
D TG E+ + S ++ AA A D++ + +TH T + KR + G +
Sbjct: 294 DFTGHEVMATINESLRQRADAAFEALARDDLPAYITHVWTQTVSISIRKRIT----GTLP 349
Query: 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTT 300
L + + F L DP D P+V+AS+ F + T Y N V+G+NCRFL G T+
Sbjct: 350 PHLREMSEGLAEVFCLTDPSRHDNPIVFASEEFHRTTQYGMNYVLGRNCRFLQGPKTNPF 409
Query: 301 VLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ +IKE + + LNYR+D S F NLL ++P+ ++ G V
Sbjct: 410 SVKRIKEKVLAGKEHFETFLNYRRDGSPFMNLLMVAPLYDSRGAV 454
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 17 TLWVH--EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
TL H E + L + F +TDPS +PIVFAS F + + + ++GRN R QGP+T
Sbjct: 347 TLPPHLREMSEGLAEVFCLTDPSRHDNPIVFASEEFHRTTQYGMNYVLGRNCRFLQGPKT 406
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
N ++ I+E + + LNY++DG+PF L ++ ++ G +F+ QV
Sbjct: 407 NPFSVKRIKEKVLAGKEHFETFLNYRRDGSPFMNLLMVAPLYDSR-GAVRYFIGAQV 462
>gi|313682782|ref|YP_004060520.1| PAS/PAC sensor-containing diguanylate cyclase [Sulfuricurvum
kujiense DSM 16994]
gi|313155642|gb|ADR34320.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM
16994]
Length = 568
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 57/90 (63%)
Query: 256 LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315
+ DP LPD P++Y + AF ++TGY E VG+NCRFL ++ + L + E++ Q+C
Sbjct: 173 ITDPSLPDNPLIYVNRAFTEITGYSFEEAVGRNCRFLRDLEPKQSGLPSVYEALNNVQSC 232
Query: 316 TVRILNYRKDKSSFWNLLHISPIRNASGKV 345
V + NY K+ F NLL+I+P+ + GK+
Sbjct: 233 EVELRNYTKEGKLFHNLLNITPMFDNHGKL 262
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 66/125 (52%), Gaps = 2/125 (1%)
Query: 14 NRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPR 73
N L+ H +D + TITDPS+ +P+++ +R F +++G+S E +GRN R +
Sbjct: 155 NEAALFKH-LVDIVDTGITITDPSLPDNPLIYVNRAFTEITGYSFEEAVGRNCRFLRDLE 213
Query: 74 TNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+ + + EA+ + EV L NY K+G F L ++ +F G+ +F+ VQ I
Sbjct: 214 PKQSGLPSVYEALNNVQSCEVELRNYTKEGKLFHNLLNITPMFDNH-GKLKYFIGVQHDI 272
Query: 134 VSRKH 138
+K
Sbjct: 273 SRQKQ 277
>gi|46114260|ref|XP_383148.1| hypothetical protein FG02972.1 [Gibberella zeae PH-1]
Length = 731
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 60/96 (62%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+ + F L DP PD P+V+AS+ F + T Y + V+G+NCRFL G T++ + +I++ +
Sbjct: 346 LAEVFCLTDPSRPDNPIVFASEEFHRTTQYGMDYVLGRNCRFLQGPKTNSYSVQRIRDKL 405
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ Q LNYR+D S F NLL +SP+ ++ G V
Sbjct: 406 KAGQDHCETFLNYRRDGSPFMNLLMVSPLYDSRGIV 441
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 54/90 (60%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L + F +TDPS +PIVFAS F + + + ++GRN R QGP+TN ++ IR+ +
Sbjct: 346 LAEVFCLTDPSRPDNPIVFASEEFHRTTQYGMDYVLGRNCRFLQGPKTNSYSVQRIRDKL 405
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVF 116
+ + LNY++DG+PF L +S ++
Sbjct: 406 KAGQDHCETFLNYRRDGSPFMNLLMVSPLY 435
>gi|302845961|ref|XP_002954518.1| hypothetical protein VOLCADRAFT_76302 [Volvox carteri f.
nagariensis]
gi|300260190|gb|EFJ44411.1| hypothetical protein VOLCADRAFT_76302 [Volvox carteri f.
nagariensis]
Length = 224
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ + S T++DP G+P+ + S GFL M+G++ E +GRN + Q + + T +
Sbjct: 91 AMESILSSLTVSDPHEEGNPLCYVSPGFLSMTGYNEDECLGRNCKFLQDGKLDPSTHEAL 150
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
R AI E R V + N++K G PF L + VFG++ HFV V + R+
Sbjct: 151 RSAISERRFATVEVTNFRKGGRPFQNLLSLLPVFGEDGASLLHFVGVHCDLDERR 205
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 231 CSLP----GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVG 286
CSLP SL ++ I S + DPH P+ Y S FL +TGY+ +E +G
Sbjct: 72 CSLPPKENSFTLEDESLSAAMESILSSLTVSDPHEEGNPLCYVSPGFLSMTGYNEDECLG 131
Query: 287 QNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+NC+FL D + ++ +I + TV + N+RK F NLL + P+ G L
Sbjct: 132 RNCKFLQDGKLDPSTHEALRSAISERRFATVEVTNFRKGGRPFQNLLSLLPVFGEDGASL 191
>gi|77166433|ref|YP_344958.1| PAS domain-containing protein [Nitrosococcus oceani ATCC 19707]
gi|76884747|gb|ABA59428.1| PAS domain protein [Nitrosococcus oceani ATCC 19707]
Length = 150
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+ LD + ++TDP +P+++ + F K++G+ + EI+G+N R+ QG ++
Sbjct: 21 QILDSCVNGISLTDPDQEDNPLIYVNEAFEKITGYKKEEILGKNCRILQGNDRDQEGSRR 80
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+REAI++ P+EV+L NYKK+G F+ ++ VF +E G +F+ VQ + +
Sbjct: 81 VREAIQKRVPVEVDLKNYKKNGELFYNHLAINPVFDQE-GNLLYFLGVQYDVTKQ 134
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 60/110 (54%)
Query: 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296
G I L L L DP D P++Y ++AF K+TGY + E++G+NCR L G D
Sbjct: 13 GLIPRVLSQILDSCVNGISLTDPDQEDNPLIYVNEAFEKITGYKKEEILGKNCRILQGND 72
Query: 297 TDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
D +++E+IQ V + NY+K+ F+N L I+P+ + G +L
Sbjct: 73 RDQEGSRRVREAIQKRVPVEVDLKNYKKNGELFYNHLAINPVFDQEGNLL 122
>gi|298708645|emb|CBJ26132.1| PAS/PAC sensor hybrid histidine kinase putative blue light receptor
[Ectocarpus siliculosus]
Length = 1522
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 53/87 (60%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
V+ D +P PMVY + F K TGY + E VG+NCRFL G +T+ + I+ ++ Q
Sbjct: 181 VISDMTIPGAPMVYINGEFTKTTGYTKEEAVGRNCRFLQGPETEPESIAVIRNTLSKGQD 240
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNA 341
C V++ NYRK+ F NLL + P+ +A
Sbjct: 241 CHVKLTNYRKNGEKFQNLLSMKPVFDA 267
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
V+ D +P PMVY + F K TGY + E VG+NCRFL G +T+ + I+ ++ Q
Sbjct: 963 VISDMTIPGAPMVYINGEFTKTTGYTKEEAVGRNCRFLQGPETEPESIAVIRNTLSKGQD 1022
Query: 315 CTVRILNYRKDKSSFWNLLHISPI 338
C V++ NYRK+ F NLL + P+
Sbjct: 1023 CHVKLTNYRKNGEKFQNLLSMKPV 1046
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Query: 25 DELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84
+ P I+D +I G P+V+ + F K +G+++ E +GRN R QGP T +I IR
Sbjct: 956 ESFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGRNCRFLQGPETEPESIAVIRN 1015
Query: 85 AIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140
+ + + V L NY+K+G F L M VF D + + VQ I+ K ++
Sbjct: 1016 TLSKGQDCHVKLTNYRKNGEKFQNLLSMKPVFDG-DNIYRYVIGVQFEILEDKGLK 1070
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
P I+D +I G P+V+ + F K +G+++ E +GRN R QGP T +I IR +
Sbjct: 176 FPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGRNCRFLQGPETEPESIAVIRNTL 235
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140
+ + V L NY+K+G F L M VF +D + + VQ I+ + ++
Sbjct: 236 SKGQDCHVKLTNYRKNGEKFQNLLSMKPVFDADD-IYRYVIGVQFEILQDEGLK 288
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 12/155 (7%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
+ D ++ G P+ + + GF ++G+ + E IGRN + QG T + EI A+++ P+
Sbjct: 551 VADMNVPGCPLAYINEGFKTVTGYGK-ENIGRNSKFLQGEETEGYMVEEIMHALQQHEPL 609
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGG 152
L N+K DG F L + V GKE G + + +QV + S M M
Sbjct: 610 CCKLHNHKADGRKFQNLLCLHPVLGKE-GEYLYQIGMQVELHSHPGMMAQIMEMER---- 664
Query: 153 SRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTG 187
LR + SC V DS D+ R++ +D G
Sbjct: 665 -VLR--LLPSC---VTGDSGDDIQRIIPVDYTGDG 693
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 60/109 (55%), Gaps = 6/109 (5%)
Query: 238 FISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297
F + S +S+G V+ D ++P P+ Y ++ F +TGY + E +G+N +FL G +T
Sbjct: 538 FKTMSETVSVG-----MVVADMNVPGCPLAYINEGFKTVTGYGK-ENIGRNSKFLQGEET 591
Query: 298 DTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ ++ +I ++Q + ++ N++ D F NLL + P+ G+ L
Sbjct: 592 EGYMVEEIMHALQQHEPLCCKLHNHKADGRKFQNLLCLHPVLGKEGEYL 640
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
++D + G P+ + + GF +G+ + E IGRN + QGP T + EI E++R
Sbjct: 1338 LVVSDMFVPGCPLAYLNEGFAAQTGYGK-ENIGRNSKFLQGPMTEGYMVEEIVESLRHAD 1396
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
P+ L N+K DG+ + + ++ VF DG + + QV
Sbjct: 1397 PLFCKLQNHKPDGSVYQLCLCLTPVFNV-DGEYKYQIGCQV 1436
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ D +P P+ Y ++ F TGY + E +G+N +FL G T+ ++ +I ES++
Sbjct: 1338 LVVSDMFVPGCPLAYLNEGFAAQTGYGK-ENIGRNSKFLQGPMTEGYMVEEIVESLRHAD 1396
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGK 344
++ N++ D S + L ++P+ N G+
Sbjct: 1397 PLFCKLQNHKPDGSVYQLCLCLTPVFNVDGE 1427
>gi|399543355|ref|YP_006556663.1| two-component response regulator [Marinobacter sp. BSs20148]
gi|399158687|gb|AFP29250.1| Two-component response regulator [Marinobacter sp. BSs20148]
Length = 859
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 54/90 (60%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ D P+MPMVYA+ AF ++TGY NE+VG + L+G +T + I+ ++ +
Sbjct: 313 IVMADARHPEMPMVYANPAFSEITGYTHNEIVGHSWHVLHGENTSPEAVEAIERGLRHQT 372
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASG 343
V ++NYRKD FWN L +SP+ + G
Sbjct: 373 EINVELINYRKDGMPFWNHLRVSPVFDTDG 402
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR 87
P+ + D P+V+A+ F +++G++ EI+G + + G T+ + I +R
Sbjct: 310 PNGIVMADARHPEMPMVYANPAFSEITGYTHNEIVGHSWHVLHGENTSPEAVEAIERGLR 369
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
+ I V L+NY+KDG PFW ++S VF DG THF+ Q I K
Sbjct: 370 HQTEINVELINYRKDGMPFWNHLRVSPVFDT-DGLCTHFIGHQQDITHHK 418
>gi|440683682|ref|YP_007158477.1| multi-sensor signal transduction histidine kinase [Anabaena
cylindrica PCC 7122]
gi|428680801|gb|AFZ59567.1| multi-sensor signal transduction histidine kinase [Anabaena
cylindrica PCC 7122]
Length = 793
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 32 TITDP-SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
T +P + G IV+ + F +M+G++ AEI+G+ R+ QG +T R + +IR ++ +
Sbjct: 277 TAAEPIDLPGPKIVYVNPAFTQMTGYTSAEILGKTPRILQGEKTERAALDKIRANLQTWQ 336
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
P++V ++NY+KDG+ FW+ + V E G TH++A+Q I RK +
Sbjct: 337 PVQVEMINYRKDGSDFWVELNIIPV-TDERGWFTHWIAIQRDITDRKQAETT 387
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%)
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320
LP +VY + AF ++TGY E++G+ R L G T+ L +I+ ++QT Q V ++
Sbjct: 284 LPGPKIVYVNPAFTQMTGYTSAEILGKTPRILQGEKTERAALDKIRANLQTWQPVQVEMI 343
Query: 321 NYRKDKSSFWNLLHISPIRNASG 343
NYRKD S FW L+I P+ + G
Sbjct: 344 NYRKDGSDFWVELNIIPVTDERG 366
>gi|424923125|ref|ZP_18346486.1| hypothetical protein I1A_002574 [Pseudomonas fluorescens R124]
gi|404304285|gb|EJZ58247.1| hypothetical protein I1A_002574 [Pseudomonas fluorescens R124]
Length = 153
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 53/80 (66%)
Query: 266 MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKD 325
++YA+ AF +LTGY +E + Q+CRFL G D D L I+E+I+ Q C I NYRKD
Sbjct: 30 LIYANPAFQRLTGYSTDETLYQDCRFLQGDDRDQPSLVAIREAIENFQPCRQIIRNYRKD 89
Query: 326 KSSFWNLLHISPIRNASGKV 345
S+FWN L I+P+ N + ++
Sbjct: 90 GSAFWNELSITPVFNDADQL 109
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88
D + + + +++A+ F +++G+S E + ++ R QG ++ +++ IREAI
Sbjct: 16 DGIVVAEQEGDENILIYANPAFQRLTGYSTDETLYQDCRFLQGDDRDQPSLVAIREAIEN 75
Query: 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
+P + NY+KDG+ FW ++ VF D + T+++ +Q
Sbjct: 76 FQPCRQIIRNYRKDGSAFWNELSITPVFNDAD-QLTYYIGIQ 116
>gi|85373778|ref|YP_457840.1| sensor histidine kinase [Erythrobacter litoralis HTCC2594]
gi|84786861|gb|ABC63043.1| sensor histidine kinase [Erythrobacter litoralis HTCC2594]
Length = 225
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 73/130 (56%), Gaps = 3/130 (2%)
Query: 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRT 78
WV + ++ P + ++DP ++ +P++ ++ F ++G+S E +GRN R G T
Sbjct: 31 WVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWL 90
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+IR+ +RE +P+ V +LNYKKDGTPF ++ ++ +D +F+ QV + +
Sbjct: 91 TDKIRQGVREHKPVLVEILNYKKDGTPFRNAVLVAPIY-DDDDELLYFLGSQVEVDDDQP 149
Query: 139 MRNSGMSYSE 148
N GM+ E
Sbjct: 150 --NMGMARRE 157
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
V+ DP L D P++ + AF LTGY E VG+NCRFL G T+ + +I++ ++ +
Sbjct: 44 VVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKP 103
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
V ILNY+KD + F N + ++PI + ++L
Sbjct: 104 VLVEILNYKKDGTPFRNAVLVAPIYDDDDELL 135
>gi|443469433|ref|ZP_21059602.1| diguanylate cyclase/phosphodiesterase [Pseudomonas
pseudoalcaligenes KF707]
gi|443473283|ref|ZP_21063308.1| diguanylate cyclase/phosphodiesterase [Pseudomonas
pseudoalcaligenes KF707]
gi|442898836|gb|ELS25431.1| diguanylate cyclase/phosphodiesterase [Pseudomonas
pseudoalcaligenes KF707]
gi|442903846|gb|ELS29137.1| diguanylate cyclase/phosphodiesterase [Pseudomonas
pseudoalcaligenes KF707]
Length = 1068
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 54/91 (59%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
V++D D P++Y + AF ++TGY +E++G NCR L + D T L I+ +
Sbjct: 385 VIVDAQEFDQPIIYVNPAFERITGYSAHEIIGHNCRILQRGERDQTALDVIRHGLAQSSE 444
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
V + NYRKD S FWN L+ISP+ N G++
Sbjct: 445 AHVVLRNYRKDGSPFWNDLYISPVLNERGEL 475
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 13/129 (10%)
Query: 2 DSQLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEI 61
+ QL L+++S Y + I D PI++ + F +++G+S EI
Sbjct: 367 EKQLRLLKRSLEASY------------NGVVIVDAQEFDQPIIYVNPAFERITGYSAHEI 414
Query: 62 IGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDG 121
IG N R+ Q ++ + IR + + V L NY+KDG+PFW +S V E G
Sbjct: 415 IGHNCRILQRGERDQTALDVIRHGLAQSSEAHVVLRNYRKDGSPFWNDLYISPVLN-ERG 473
Query: 122 RATHFVAVQ 130
THFV VQ
Sbjct: 474 ELTHFVGVQ 482
>gi|403166865|ref|XP_003326736.2| hypothetical protein PGTG_07714 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166744|gb|EFP82317.2| hypothetical protein PGTG_07714 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 669
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Query: 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIM 80
E L DSF +T+P + +P+V S F +G R IIG N R QGP T+ ++I
Sbjct: 353 EETCQGLGDSFVVTNPRLRDNPVVMVSPSFSATTGHDRNSIIGMNCRFLQGPGTSPQSIQ 412
Query: 81 EIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140
+R+A+++ P LLNYK DGTPF+ L + +F E G ++++ Q+ + +R
Sbjct: 413 RLRQALKQGLPCVELLLNYKADGTPFYCLLSIIPLFD-EKGFLSYYIGGQINVTD--ELR 469
Query: 141 NSGM 144
N+ +
Sbjct: 470 NNQI 473
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 55/91 (60%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
SFV+ +P L D P+V S +F TG+DRN ++G NCRFL G T + +++++++
Sbjct: 362 SFVVTNPRLRDNPVVMVSPSFSATTGHDRNSIIGMNCRFLQGPGTSPQSIQRLRQALKQG 421
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASG 343
C +LNY+ D + F+ LL I P+ + G
Sbjct: 422 LPCVELLLNYKADGTPFYCLLSIIPLFDEKG 452
>gi|307104345|gb|EFN52599.1| hypothetical protein CHLNCDRAFT_14999, partial [Chlorella
variabilis]
Length = 111
Score = 80.5 bits (197), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/102 (35%), Positives = 61/102 (59%), Gaps = 11/102 (10%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG-----------VDTDTTVLY 303
V+ D LPDMP++YA++ F ++TGY R+ V+G+NCRFL TD V+
Sbjct: 2 VIADCSLPDMPLIYANEGFTRMTGYGRHAVLGRNCRFLQNPPAGTTANAAGAGTDPEVVA 61
Query: 304 QIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
++ESI C V+++NY+++ F N L ++P+ + G++
Sbjct: 62 ALRESIAAGLPCVVQLMNYKRNGDPFINYLSLNPVHDTGGRL 103
Score = 70.9 bits (172), Expect = 8e-10, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 12/110 (10%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP-----------RTNRRTIME 81
I D S+ P+++A+ GF +M+G+ R ++GRN R Q P T+ +
Sbjct: 3 IADCSLPDMPLIYANEGFTRMTGYGRHAVLGRNCRFLQNPPAGTTANAAGAGTDPEVVAA 62
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+RE+I P V L+NYK++G PF ++ V GR TH+V VQV
Sbjct: 63 LRESIAAGLPCVVQLMNYKRNGDPFINYLSLNPVH-DTGGRLTHYVGVQV 111
>gi|358056329|dbj|GAA97696.1| hypothetical protein E5Q_04374 [Mixia osmundae IAM 14324]
Length = 669
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 57/93 (61%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ L +P L D P+V AS F LTGY R E+ G+NCRFL G + + +I++++ +
Sbjct: 315 WCLTNPRLKDHPIVLASPGFEDLTGYTREEICGRNCRFLQGPSSSQESVGRIRDALNRGE 374
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
C+ ILNYR+ F+ LL I P+++ SG ++
Sbjct: 375 GCSELILNYRRSGQPFYCLLTIMPLKSKSGDIV 407
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L D + +T+P + HPIV AS GF ++G++R EI GRN R QGP +++ ++ IR+A+
Sbjct: 311 LGDCWCLTNPRLKDHPIVLASPGFEDLTGYTREEICGRNCRFLQGPSSSQESVGRIRDAL 370
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
+LNY++ G PF+ L + + + G +F+ QV + S
Sbjct: 371 NRGEGCSELILNYRRSGQPFYCLLTI-MPLKSKSGDIVYFLGGQVDVGS 418
>gi|322433264|ref|YP_004210485.1| PAS/PAC sensor signal transduction histidine kinase [Granulicella
tundricola MP5ACTX9]
gi|321165656|gb|ADW71358.1| PAS/PAC sensor signal transduction histidine kinase [Granulicella
tundricola MP5ACTX9]
Length = 519
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 55/85 (64%)
Query: 261 LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320
LPD+P+VY + AF ++TGY R EV G+NCRFL G + L ++++++ + +
Sbjct: 171 LPDLPIVYVNPAFEEMTGYSRAEVQGRNCRFLEGNERSQPALAIVRDALKNRRKGLAVLK 230
Query: 321 NYRKDKSSFWNLLHISPIRNASGKV 345
N+RKD + FWN L +SPI + G++
Sbjct: 231 NFRKDGTPFWNELSLSPIMDDEGQL 255
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER 90
++ ++ PIV+ + F +M+G+SRAE+ GRN R +G ++ + +R+A++ R
Sbjct: 164 ISVASATLPDLPIVYVNPAFEEMTGYSRAEVQGRNCRFLEGNERSQPALAIVRDALKNRR 223
Query: 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
L N++KDGTPFW +S + E G+ TH+V +Q + R + ++
Sbjct: 224 KGLAVLKNFRKDGTPFWNELSLSPIMDDE-GQLTHYVGIQTDVTQRVELESA 274
>gi|358056330|dbj|GAA97697.1| hypothetical protein E5Q_04375 [Mixia osmundae IAM 14324]
Length = 670
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 57/93 (61%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
+ L +P L D P+V AS F LTGY R E+ G+NCRFL G + + +I++++ +
Sbjct: 316 WCLTNPRLKDHPIVLASPGFEDLTGYTREEICGRNCRFLQGPSSSQESVGRIRDALNRGE 375
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
C+ ILNYR+ F+ LL I P+++ SG ++
Sbjct: 376 GCSELILNYRRSGQPFYCLLTIMPLKSKSGDIV 408
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L D + +T+P + HPIV AS GF ++G++R EI GRN R QGP +++ ++ IR+A+
Sbjct: 312 LGDCWCLTNPRLKDHPIVLASPGFEDLTGYTREEICGRNCRFLQGPSSSQESVGRIRDAL 371
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
+LNY++ G PF+ L + + + G +F+ QV + S
Sbjct: 372 NRGEGCSELILNYRRSGQPFYCLLTI-MPLKSKSGDIVYFLGGQVDVGS 419
>gi|336317206|ref|ZP_08572073.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Rheinheimera sp. A13L]
gi|335878506|gb|EGM76438.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Rheinheimera sp. A13L]
Length = 1195
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 53/91 (58%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
+ ++ D PD P+VY + AF +LTGY EV+G+NCR L D L I+ +I+
Sbjct: 501 AIIITDNEAPDQPIVYVNPAFEQLTGYTSAEVLGKNCRLLQSQDRHQPGLDSIRRAIRNN 560
Query: 313 QACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+LNYRKD SSFWN L ++P+ N G
Sbjct: 561 CKGNAELLNYRKDGSSFWNDLTLAPVVNDRG 591
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A++ ++ ITD PIV+ + F +++G++ AE++G+N R+ Q ++ + I
Sbjct: 494 AIEASINAIIITDNEAPDQPIVYVNPAFEQLTGYTSAEVLGKNCRLLQSQDRHQPGLDSI 553
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
R AIR LLNY+KDG+ FW ++ V + G +HFV + I K+ R
Sbjct: 554 RRAIRNNCKGNAELLNYRKDGSSFWNDLTLAPVVN-DRGHTSHFVGILRDITESKNYRQ 611
>gi|294499816|ref|YP_003563516.1| Blue-light photoreceptor [Bacillus megaterium QM B1551]
gi|294349753|gb|ADE70082.1| Blue-light photoreceptor [Bacillus megaterium QM B1551]
Length = 260
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+++AL +TDPS+ +PI++ ++GF M+G+ E++G N R QGP TN +
Sbjct: 14 LNKALHSSQSGIIVTDPSLPDNPIIYLNQGFSLMTGYKEEEVLGENCRFLQGPLTNPHHV 73
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
EIR AI + + V L+NY+KDG+ F + + +E+ + +F+ VQ
Sbjct: 74 DEIRSAISRNQSVSVTLVNYRKDGSFFHNQLTIDPTYIEEEDKY-YFIGVQ 123
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 54/87 (62%)
Query: 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310
+ ++ DP LPD P++Y + F +TGY EV+G+NCRFL G T+ + +I+ +I
Sbjct: 22 QSGIIVTDPSLPDNPIIYLNQGFSLMTGYKEEEVLGENCRFLQGPLTNPHHVDEIRSAIS 81
Query: 311 TEQACTVRILNYRKDKSSFWNLLHISP 337
Q+ +V ++NYRKD S F N L I P
Sbjct: 82 RNQSVSVTLVNYRKDGSFFHNQLTIDP 108
>gi|448474944|ref|ZP_21602709.1| histidine kinase [Halorubrum aidingense JCM 13560]
gi|445816936|gb|EMA66818.1| histidine kinase [Halorubrum aidingense JCM 13560]
Length = 522
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+DE P TI + +P+V+A+ F ++G+ EI G + R QG T+ T +
Sbjct: 168 AMDEAPVGITIAESGDGENPLVYANAEFEALTGYG-PEIFGTDCRFLQGEETDPDTRATL 226
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
REAI ERP+ V++LNY+++G FW ++ + DG TH+V Q I RK
Sbjct: 227 REAIDAERPVSVDILNYRRNGQKFWNRLTVAPIRDG-DGTVTHYVGFQTDITDRK 280
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 265 PMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRK 324
P+VYA+ F LTGY E+ G +CRFL G +TD ++E+I E+ +V ILNYR+
Sbjct: 187 PLVYANAEFEALTGYG-PEIFGTDCRFLQGEETDPDTRATLREAIDAERPVSVDILNYRR 245
Query: 325 DKSSFWNLLHISPIRNASGKV 345
+ FWN L ++PIR+ G V
Sbjct: 246 NGQKFWNRLTVAPIRDGDGTV 266
>gi|85373799|ref|YP_457861.1| sensory box histidine kinase [Erythrobacter litoralis HTCC2594]
gi|123005050|sp|Q2NB77.1|LVHK2_ERYLH RecName: Full=Blue-light-activated histidine kinase 2; AltName:
Full=EL346-LOV-histidine kinase; Short=EL346-LOV-HK
gi|84786882|gb|ABC63064.1| sensory box histidine kinase [Erythrobacter litoralis HTCC2594]
Length = 346
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
EA LP S TI D S P+++ +R F +M+G+SR+ ++GRN R QG +T+ +
Sbjct: 11 EAWGRLPFSLTIADISQDDEPLIYVNRAFEQMTGYSRSSVVGRNCRFLQGEKTDPGAVER 70
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
+ +AIR +E + NY+ DG FW M +D + +FV +QV
Sbjct: 71 LAKAIRNCEEVEETIYNYRADGEGFWNHLLMG-PLEDQDEKCRYFVGIQV 119
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 56/99 (56%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+ GR+ S + D D P++Y + AF ++TGY R+ VVG+NCRFL G TD + ++
Sbjct: 12 AWGRLPFSLTIADISQDDEPLIYVNRAFEQMTGYSRSSVVGRNCRFLQGEKTDPGAVERL 71
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGK 344
++I+ + I NYR D FWN L + P+ + K
Sbjct: 72 AKAIRNCEEVEETIYNYRADGEGFWNHLLMGPLEDQDEK 110
>gi|424073934|ref|ZP_17811346.1| sensor y box/GGDEF domain-containing protein domain/EAL domain
protein [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|407995230|gb|EKG35767.1| sensor y box/GGDEF domain-containing protein domain/EAL domain
protein [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
Length = 787
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 70/118 (59%), Gaps = 6/118 (5%)
Query: 29 DSFTITDPS---ISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ + G IV+ + FL +GFS E+IG+ R+ Q +NR T+ ++R +
Sbjct: 167 DAILITEAEPIDMPGPRIVYCNPAFLANTGFSLEEVIGQTPRILQCEESNRDTLRQLRAS 226
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRKHMRNS 142
++ PIEV L+N ++DGT FW+ +MS+V E+G TH+V+VQ I RK +
Sbjct: 227 LQRWEPIEVELINARRDGTRFWV--QMSIVPVANENGWFTHWVSVQRDITERKEAEEA 282
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 251 KQSFVLIDPHLPDMP---MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKE 307
K + ++ + DMP +VY + AFL TG+ EV+GQ R L +++ L Q++
Sbjct: 166 KDAILITEAEPIDMPGPRIVYCNPAFLANTGFSLEEVIGQTPRILQCEESNRDTLRQLRA 225
Query: 308 SIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
S+Q + V ++N R+D + FW + I P+ N +G
Sbjct: 226 SLQRWEPIEVELINARRDGTRFWVQMSIVPVANENG 261
>gi|393777809|ref|ZP_10366099.1| putative signal transduction eal-ggdef domain transmembrane protein
[Ralstonia sp. PBA]
gi|392715108|gb|EIZ02692.1| putative signal transduction eal-ggdef domain transmembrane protein
[Ralstonia sp. PBA]
Length = 688
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 63/103 (61%), Gaps = 4/103 (3%)
Query: 247 LGRIKQS----FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L R+ QS V+ D D+P+VY + AF +TGY +EV+G+NCRFL+ ++ L
Sbjct: 136 LRRVIQSAACGIVVADALQEDLPLVYVNPAFEAMTGYRADEVLGRNCRFLHSTESGQAAL 195
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+++ +++ ++ V + N+RKD F N +SP+RNA GKV
Sbjct: 196 NEVRAALREQRETRVLLRNFRKDGQLFLNQFLLSPVRNAEGKV 238
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 42 PIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKK 101
P+V+ + F M+G+ E++GRN R + + + E+R A+RE+R V L N++K
Sbjct: 158 PLVYVNPAFEAMTGYRADEVLGRNCRFLHSTESGQAALNEVRAALREQRETRVLLRNFRK 217
Query: 102 DGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141
DG F F +S V E G+ TH+V +Q + R+ R
Sbjct: 218 DGQLFLNQFLLSPVRNAE-GKVTHYVGIQEDVTEREMARQ 256
>gi|421857430|ref|ZP_16289766.1| hypothetical protein ACRAD_51_00370 [Acinetobacter radioresistens
DSM 6976 = NBRC 102413]
gi|403187158|dbj|GAB75967.1| hypothetical protein ACRAD_51_00370 [Acinetobacter radioresistens
DSM 6976 = NBRC 102413]
Length = 855
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR 87
P+ ITD + + IV+ + FL M+G++ +++G+ QGP T I ++ A++
Sbjct: 309 PNGIIITDAT-AERKIVYVNPAFLHMTGYTEEDVMGKTCHFLQGPETEAEKIALVQRALK 367
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
E + I+V + NY+KDG+ FW + VF E GR THF+ +Q I ++
Sbjct: 368 EHKEIQVTVKNYRKDGSWFWNRLMLGPVF-DEAGRCTHFLGIQEDITQQR 416
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 53/90 (58%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
++I + +VY + AFL +TGY +V+G+ C FL G +T+ + ++ +++ +
Sbjct: 312 IIITDATAERKIVYVNPAFLHMTGYTEEDVMGKTCHFLQGPETEAEKIALVQRALKEHKE 371
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGK 344
V + NYRKD S FWN L + P+ + +G+
Sbjct: 372 IQVTVKNYRKDGSWFWNRLMLGPVFDEAGR 401
>gi|171910825|ref|ZP_02926295.1| two-component hybrid sensor and regulator [Verrucomicrobium
spinosum DSM 4136]
Length = 772
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 74/139 (53%), Gaps = 16/139 (11%)
Query: 2 DSQLGLIEQSFNNRYTLWVHEALDELPDSFTIT--DPSISGHP-IVFASRGFLKMSGFSR 58
D++LGL+E A+ L D +T DP P IVFA+ FL+ +G++
Sbjct: 9 DNKLGLLEA------------AVAHLSDMVLVTEADPIEEPGPRIVFANDAFLRRTGYTA 56
Query: 59 AEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGK 118
+E++GR+ R QGP T+R + ++R + + + V LLNY K G FW+ ++ V
Sbjct: 57 SEVLGRSPRFLQGPSTSREALDQLRAGLVARQLVRVELLNYTKSGDEFWLEIEVVPVLNA 116
Query: 119 EDGRATHFVAVQVPIVSRK 137
G THFVA++ I RK
Sbjct: 117 -SGSCTHFVAIERDITGRK 134
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 48/82 (58%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILN 321
P +V+A+DAFL+ TGY +EV+G++ RFL G T L Q++ + Q V +LN
Sbjct: 37 PGPRIVFANDAFLRRTGYTASEVLGRSPRFLQGPSTSREALDQLRAGLVARQLVRVELLN 96
Query: 322 YRKDKSSFWNLLHISPIRNASG 343
Y K FW + + P+ NASG
Sbjct: 97 YTKSGDEFWLEIEVVPVLNASG 118
>gi|408671576|ref|YP_006870460.1| PAS/PAC sensor signal transduction histidine kinase, partial
[Emticicia oligotrophica DSM 17448]
gi|387857473|gb|AFK05569.1| PAS/PAC sensor signal transduction histidine kinase [Emticicia
oligotrophica DSM 17448]
Length = 1215
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 4/111 (3%)
Query: 29 DSFTITDPSISGHP---IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+P P I++A++ F KM+G+ EIIG+ R+ QGP+++ + + + +A
Sbjct: 640 DAILITEPEPFDEPGPKIMYANKAFTKMTGYEVEEIIGKTPRILQGPKSDFKELARLSQA 699
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+R+ EV +NYKK+G FW+ F ++ V E G TH++A+ I +
Sbjct: 700 LRKWESCEVTTINYKKNGEEFWVNFTVTPV-ANEKGWFTHWIAISRDITEK 749
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Query: 253 SFVLIDPHLPDMP---MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+ ++ +P D P ++YA+ AF K+TGY+ E++G+ R L G +D L ++ +++
Sbjct: 641 AILITEPEPFDEPGPKIMYANKAFTKMTGYEVEEIIGKTPRILQGPKSDFKELARLSQAL 700
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+ ++C V +NY+K+ FW ++P+ N G
Sbjct: 701 RKWESCEVTTINYKKNGEEFWVNFTVTPVANEKG 734
>gi|291226780|ref|XP_002733369.1| PREDICTED: potassium voltage-gated channel subfamily H member
1-like [Saccoglossus kowalevskii]
Length = 1033
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Query: 236 MGFISSSLYISLGRIKQS-FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQN--CRFL 292
+ F S+ +Y ++ + S F+L + + D P+VY++D F K++GY+R EV+ ++ C F+
Sbjct: 16 LTFKSTLIYYTVKKSSNSNFLLANAQIVDYPIVYSNDGFCKMSGYNRAEVMQRSSTCSFM 75
Query: 293 NGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
G TD + +++ S + + V IL Y+K+++ W LLH++PIRN V+
Sbjct: 76 YGELTDKETIKKVRSSFENYETVQVEILMYKKNRTPMWLLLHVAPIRNEKENVV 129
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNG--RMFQGPRTNRRTIMEIREAIR 87
+F + + I +PIV+++ GF KMSG++RAE++ R+ G T++ TI ++R +
Sbjct: 34 NFLLANAQIVDYPIVYSNDGFCKMSGYNRAEVMQRSSTCSFMYGELTDKETIKKVRSSFE 93
Query: 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDG 121
++V +L YKK+ TP W+L ++ + +++
Sbjct: 94 NYETVQVEILMYKKNRTPMWLLLHVAPIRNEKEN 127
>gi|384046290|ref|YP_005494307.1| Blue-light photoreceptor [Bacillus megaterium WSH-002]
gi|345443981|gb|AEN88998.1| Blue-light photoreceptor [Bacillus megaterium WSH-002]
Length = 260
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+++AL +TDPS+ +PI++ ++GF M+G+ E++G N R QGP TN +
Sbjct: 14 LNKALHSSQTGIIVTDPSLPDNPIIYLNQGFSLMTGYKEEEVLGENCRFLQGPLTNPHHV 73
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
EIR AI + + V L+NY+KDG+ F + + +E+ + +F+ VQ
Sbjct: 74 DEIRSAISRNQSVSVTLVNYRKDGSFFHNQLTIDPTYIEEEDKY-YFIGVQ 123
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 53/84 (63%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ DP LPD P++Y + F +TGY EV+G+NCRFL G T+ + +I+ +I Q
Sbjct: 25 IIVTDPSLPDNPIIYLNQGFSLMTGYKEEEVLGENCRFLQGPLTNPHHVDEIRSAISRNQ 84
Query: 314 ACTVRILNYRKDKSSFWNLLHISP 337
+ +V ++NYRKD S F N L I P
Sbjct: 85 SVSVTLVNYRKDGSFFHNQLTIDP 108
>gi|73760080|dbj|BAE20158.1| neochrome [Mougeotia scalaris]
gi|73760090|dbj|BAE20163.1| neochrome [Mougeotia scalaris]
Length = 1486
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 65/101 (64%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L RI+ SF++ DP L + P+++ SD +++LT Y R E +G +L+G +T T+ + +I
Sbjct: 915 TLERIEYSFLVTDPRLDENPIIFMSDEYIRLTAYTREEHIGGELIYLDGDNTSTSDVRKI 974
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ + Q + +++ L Y+K+ +FW L H S ++++ G VL
Sbjct: 975 RSAAQNNKELSMQFLAYKKNGDTFWALYHFSMVKDSDGTVL 1015
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 69/121 (57%), Gaps = 1/121 (0%)
Query: 221 LTGRLVCGKRCSLPG-MGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGY 279
+T R++ + S+P + ++ + + L K SF++ D D P+++ S+AF L+GY
Sbjct: 620 MTTRVLLTAQRSIPKPVSALTEEVEVVLACFKTSFLVTDATKEDYPVIFCSEAFSLLSGY 679
Query: 280 DRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIR 339
+++G +CR L G +TD + + E+++ + R L+Y+ D S FW+L+ + ++
Sbjct: 680 KAEDLLGGSCRKLEGYETDELEVSRFLEALEAGSQYSGRQLHYKSDGSPFWDLVTSAAVQ 739
Query: 340 N 340
+
Sbjct: 740 D 740
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
L+ + SF +TDP + +PI+F S +++++ ++R E IG G T+ + +IR
Sbjct: 916 LERIEYSFLVTDPRLDENPIIFMSDEYIRLTAYTREEHIGGELIYLDGDNTSTSDVRKIR 975
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAV 129
A + + + + L YKK+G FW L+ S+V DG + V V
Sbjct: 976 SAAQNNKELSMQFLAYKKNGDTFWALYHFSMV-KDSDGTVLYIVNV 1020
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89
SF +TD + +P++F S F +SG+ +++G + R +G T+ + EA+
Sbjct: 653 SFLVTDATKEDYPVIFCSEAFSLLSGYKAEDLLGGSCRKLEGYETDELEVSRFLEALEAG 712
Query: 90 RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
L+YK DG+PFW L + V + D H + Q
Sbjct: 713 SQYSGRQLHYKSDGSPFWDLVTSAAVQDEFDNVVNHVIVYQ 753
>gi|377819757|ref|YP_004976128.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
[Burkholderia sp. YI23]
gi|357934592|gb|AET88151.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Burkholderia sp. YI23]
Length = 1040
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 50/76 (65%)
Query: 268 YASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKS 327
YA+ AF ++TGYD +EV+G +CRFL+G D D L I+ ++ +V + NYRKD +
Sbjct: 510 YANPAFKRITGYDPSEVIGHDCRFLHGPDGDQDGLTAIRRALAVNTEASVVVRNYRKDGA 569
Query: 328 SFWNLLHISPIRNASG 343
FWN L ++P+ NA G
Sbjct: 570 LFWNQLFVAPVPNAQG 585
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
ALD ++ IT + I +A+ F +++G+ +E+IG + R GP ++ + I
Sbjct: 488 ALDASVNAILITGVVDGANVIEYANPAFKRITGYDPSEVIGHDCRFLHGPDGDQDGLTAI 547
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAV 129
R A+ V + NY+KDG FW ++ V + G TH + +
Sbjct: 548 RRALAVNTEASVVVRNYRKDGALFWNQLFVAPVPNAQ-GLTTHHIGI 593
>gi|347835005|emb|CCD49577.1| hypothetical protein [Botryotinia fuckeliana]
Length = 873
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 58/96 (60%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+ + F L DP PD P+V+AS+ F + T Y + V+G+NCRFL G T+ + +I+E I
Sbjct: 472 LAEVFCLTDPSRPDNPIVFASEEFHRTTQYGMSYVLGRNCRFLQGPKTNPFSVRRIREKI 531
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ Q LNYR+D S F NLL +P+ ++ G +
Sbjct: 532 EAGQEHCETFLNYRRDGSPFMNLLMCAPLCDSRGTI 567
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 17 TLWVH--EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
TL H EA + L + F +TDPS +PIVFAS F + + + + ++GRN R QGP+T
Sbjct: 460 TLPAHLREASEGLAEVFCLTDPSRPDNPIVFASEEFHRTTQYGMSYVLGRNCRFLQGPKT 519
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
N ++ IRE I + LNY++DG+PF L M G +F+ QV I
Sbjct: 520 NPFSVRRIREKIEAGQEHCETFLNYRRDGSPFMNLL-MCAPLCDSRGTIRYFIGAQVDI 577
>gi|428318045|ref|YP_007115927.1| multi-sensor signal transduction histidine kinase [Oscillatoria
nigro-viridis PCC 7112]
gi|428241725|gb|AFZ07511.1| multi-sensor signal transduction histidine kinase [Oscillatoria
nigro-viridis PCC 7112]
Length = 1145
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 73/124 (58%), Gaps = 6/124 (4%)
Query: 29 DSFTITDPSISGHP---IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ P I++ + F +M+G++ E++G+ R+ QG +T+R ++ IR A
Sbjct: 645 DAVLITEAEPIEEPGPRILYVNPAFTRMTGYTLEEVVGKTPRILQGKKTDRASLARIRTA 704
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLV-FGKEDGRATHFVAVQVPIVSRKHMRNSGM 144
++ +P+ V+ +NY+KDGT FW+ +MS+V ++G TH+V+V I RK +
Sbjct: 705 LKSWQPLRVDTINYRKDGTEFWV--EMSIVPIADKNGEFTHWVSVHRDISDRKQAEAALQ 762
Query: 145 SYSE 148
+E
Sbjct: 763 QLNE 766
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 49/83 (59%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILN 321
P ++Y + AF ++TGY EVVG+ R L G TD L +I+ ++++ Q V +N
Sbjct: 658 PGPRILYVNPAFTRMTGYTLEEVVGKTPRILQGKKTDRASLARIRTALKSWQPLRVDTIN 717
Query: 322 YRKDKSSFWNLLHISPIRNASGK 344
YRKD + FW + I PI + +G+
Sbjct: 718 YRKDGTEFWVEMSIVPIADKNGE 740
>gi|154291032|ref|XP_001546103.1| hypothetical protein BC1G_15404 [Botryotinia fuckeliana B05.10]
Length = 697
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 58/96 (60%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+ + F L DP PD P+V+AS+ F + T Y + V+G+NCRFL G T+ + +I+E I
Sbjct: 296 LAEVFCLTDPSRPDNPIVFASEEFHRTTQYGMSYVLGRNCRFLQGPKTNPFSVRRIREKI 355
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ Q LNYR+D S F NLL +P+ ++ G +
Sbjct: 356 EAGQEHCETFLNYRRDGSPFMNLLMCAPLCDSRGTI 391
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 17 TLWVH--EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
TL H EA + L + F +TDPS +PIVFAS F + + + + ++GRN R QGP+T
Sbjct: 284 TLPAHLREASEGLAEVFCLTDPSRPDNPIVFASEEFHRTTQYGMSYVLGRNCRFLQGPKT 343
Query: 75 NRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
N ++ IRE I + LNY++DG+PF L M G +F+ QV I
Sbjct: 344 NPFSVRRIREKIEAGQEHCETFLNYRRDGSPFMNLL-MCAPLCDSRGTIRYFIGAQVDI 401
>gi|374998780|ref|YP_004974279.1| putative Signal transduction histidine kinase [Azospirillum
lipoferum 4B]
gi|357426205|emb|CBS89104.1| putative Signal transduction histidine kinase [Azospirillum
lipoferum 4B]
Length = 384
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 55/85 (64%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ DP LPD+P+V+ + AF+KL+GY R EV+G++ FL+G DTD V I +++ +
Sbjct: 23 MLIADPTLPDVPIVFVNAAFIKLSGYAREEVLGKSYHFLSGSDTDPEVARAIDLALRAGE 82
Query: 314 ACTVRILNYRKDKSSFWNLLHISPI 338
A ++ YRKD + W L H +P+
Sbjct: 83 AIVRQVQLYRKDGAQLWVLQHAAPV 107
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
I DP++ PIVF + F+K+SG++R E++G++ G T+ I A+R I
Sbjct: 25 IADPTLPDVPIVFVNAAFIKLSGYAREEVLGKSYHFLSGSDTDPEVARAIDLALRAGEAI 84
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSED 149
+ Y+KDG W+L + VF +ED HFV+ V +RK + +ED
Sbjct: 85 VRQVQLYRKDGAQLWVLQHAAPVF-EEDRIRYHFVSF-VDNTARKAAEDDLRQLNED 139
>gi|344201766|ref|YP_004786909.1| multi-sensor signal transduction histidine kinase [Muricauda
ruestringensis DSM 13258]
gi|343953688|gb|AEM69487.1| multi-sensor signal transduction histidine kinase [Muricauda
ruestringensis DSM 13258]
Length = 848
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 56/99 (56%)
Query: 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305
+L + V+ + L P++Y + AF K TGY EV+G+NC FL D + I
Sbjct: 151 ALEEVGNGIVISNAQLKQFPIIYVNKAFEKNTGYTSEEVIGKNCNFLQLDDRQQQEVQII 210
Query: 306 KESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGK 344
E++ T+ C V I NY+KD + FWN L I+P+R+ G+
Sbjct: 211 GEALSTQSPCHVEIRNYKKDGTLFWNELSITPVRDFHGE 249
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
AL+E+ + I++ + PI++ ++ F K +G++ E+IG+N Q ++ + I
Sbjct: 151 ALEEVGNGIVISNAQLKQFPIIYVNKAFEKNTGYTSEEVIGKNCNFLQLDDRQQQEVQII 210
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139
EA+ + P V + NYKKDGT FW ++ V G THF+ +Q + RK++
Sbjct: 211 GEALSTQSPCHVEIRNYKKDGTLFWNELSITPVRDFH-GETTHFIGIQNDVTERKNL 266
>gi|145245543|ref|XP_001395039.1| GATA transcription factor LreA [Aspergillus niger CBS 513.88]
gi|134079743|emb|CAK40880.1| unnamed protein product [Aspergillus niger]
Length = 871
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 59/108 (54%), Gaps = 13/108 (12%)
Query: 245 ISLGRIKQS--FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD------ 296
I++G + S FVL D L D P+VY S+AF +LTGY E+VGQNCRFL G D
Sbjct: 302 INIGAVDLSCAFVLCDITLEDHPIVYVSEAFERLTGYTNQEIVGQNCRFLQGPDGVVQRG 361
Query: 297 -----TDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIR 339
D Y+++ +I+ I+NYRK F NL+ + PIR
Sbjct: 362 MQRKFVDENTAYRLRSTIEERTEIQASIINYRKGGQPFVNLITMIPIR 409
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPR-----------TNRRT 78
+F + D ++ HPIV+ S F +++G++ EI+G+N R QGP + T
Sbjct: 312 AFVLCDITLEDHPIVYVSEAFERLTGYTNQEIVGQNCRFLQGPDGVVQRGMQRKFVDENT 371
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPFWMLFKM-SLVFGKEDGRATHFVAVQVPIV 134
+R I E I+ +++NY+K G PF L M + +G D R +V QV +V
Sbjct: 372 AYRLRSTIEERTEIQASIINYRKGGQPFVNLITMIPIRWGGSDYR--FYVGFQVDLV 426
>gi|392307758|ref|ZP_10270292.1| sensor protein [Pseudoalteromonas citrea NCIMB 1889]
Length = 1105
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81
+A++ I+D + HP+VF + F +++G+ + ++G+N R QG T++ + E
Sbjct: 437 QAIESCNVGICISDATKDEHPLVFINSAFTRITGYDK-RVLGKNCRFLQGKDTSKDAVAE 495
Query: 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
IR A+ + + V +LNYK DGT FW ++S VF E G T FV +Q I R
Sbjct: 496 IRSALSQRKKHRVEILNYKADGTAFWNSLQISPVF-DEGGALTAFVGIQQDISDR 549
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 265 PMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRK 324
P+V+ + AF ++TGYD+ V+G+NCRFL G DT + +I+ ++ + V ILNY+
Sbjct: 457 PLVFINSAFTRITGYDK-RVLGKNCRFLQGKDTSKDAVAEIRSALSQRKKHRVEILNYKA 515
Query: 325 DKSSFWNLLHISPIRNASGKV 345
D ++FWN L ISP+ + G +
Sbjct: 516 DGTAFWNSLQISPVFDEGGAL 536
>gi|344342694|ref|ZP_08773565.1| multi-sensor hybrid histidine kinase [Marichromatium purpuratum
984]
gi|343806030|gb|EGV23925.1| multi-sensor hybrid histidine kinase [Marichromatium purpuratum
984]
Length = 1118
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 56/93 (60%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
++ D D P+VY + F ++TGY +EVVG NCR L D+D + ++E + Q
Sbjct: 486 ILITDARRADNPLVYVNPEFERITGYRASEVVGHNCRLLQAGDSDQPGVKMLREGLGGRQ 545
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
TV + NYRKD S FWN + I+P+ ++ G+++
Sbjct: 546 PVTVLLRNYRKDGSLFWNQISIAPVFDSDGELV 578
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92
ITD + +P+V+ + F +++G+ +E++G N R+ Q +++ + +RE + +P+
Sbjct: 488 ITDARRADNPLVYVNPEFERITGYRASEVVGHNCRLLQAGDSDQPGVKMLREGLGGRQPV 547
Query: 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
V L NY+KDG+ FW ++ VF DG HFV + + R
Sbjct: 548 TVLLRNYRKDGSLFWNQISIAPVF-DSDGELVHFVGIVTDVTER 590
>gi|409396613|ref|ZP_11247593.1| PAS/PAC/GGDEF-domain-containing protein [Pseudomonas sp. Chol1]
gi|409118795|gb|EKM95186.1| PAS/PAC/GGDEF-domain-containing protein [Pseudomonas sp. Chol1]
Length = 421
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 71/111 (63%), Gaps = 3/111 (2%)
Query: 22 EALDELPDSFTITD--PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTI 79
+A+++ +S ITD P+ G I++A+ F +SG+S E++G+ R+ QGP T+R +
Sbjct: 15 QAVEQAFNSVLITDAQPAPHGPRILYANAAFCALSGYSAEELVGQTPRILQGPLTDRDVL 74
Query: 80 MEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
E+R+ +R+ R + +NY+KDG P+W+ + +S + + G TH+V+VQ
Sbjct: 75 DELRQCLRDGRFFHGSTVNYRKDGEPYWVEWNISPIRDAQ-GAVTHYVSVQ 124
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 60/106 (56%), Gaps = 9/106 (8%)
Query: 247 LGRIKQSF--VLID-----PHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299
L ++Q+F VLI PH P + +YA+ AF L+GY E+VGQ R L G TD
Sbjct: 14 LQAVEQAFNSVLITDAQPAPHGPRI--LYANAAFCALSGYSAEELVGQTPRILQGPLTDR 71
Query: 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
VL ++++ ++ + +NYRKD +W +ISPIR+A G V
Sbjct: 72 DVLDELRQCLRDGRFFHGSTVNYRKDGEPYWVEWNISPIRDAQGAV 117
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 4/133 (3%)
Query: 4 QLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIG 63
Q G E + + EAL D+ ITD + I FA+ F M+G+S AE++G
Sbjct: 124 QRGFSELVAAQNTSQLLFEALAVSHDAVLITDENGV---IEFANPAFEAMTGYSVAEVLG 180
Query: 64 RNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRA 123
R + + + E++R +P + ++G F +S V G++D R
Sbjct: 181 RTPAFLRSGEHDDAFYASLYESLRAGQPFHATFADRHRNGHIFHADQTISPVRGRDDNR- 239
Query: 124 THFVAVQVPIVSR 136
THFV++ + +R
Sbjct: 240 THFVSIIRDLTAR 252
>gi|317031924|ref|XP_001393681.2| white collar [Aspergillus niger CBS 513.88]
Length = 588
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 60/96 (62%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+ + F L DP D P+V+AS+ F + T Y + V+G+NCRFL G T+ + +IKE+I
Sbjct: 278 LAEVFCLTDPSRRDNPIVFASEEFHRTTQYGMDYVLGRNCRFLQGPKTNANSVRRIKEAI 337
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ + + LNYR+D S F NLL +P+ ++ G+V
Sbjct: 338 EAGRHHSELFLNYRRDGSPFMNLLQCAPLCDSHGRV 373
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L + F +TDPS +PIVFAS F + + + ++GRN R QGP+TN ++ I+EAI
Sbjct: 278 LAEVFCLTDPSRRDNPIVFASEEFHRTTQYGMDYVLGRNCRFLQGPKTNANSVRRIKEAI 337
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
R LNY++DG+PF L + + + GR +F+ Q+
Sbjct: 338 EAGRHHSELFLNYRRDGSPFMNLLQCAPLCDSH-GRVRYFIGAQI 381
>gi|358369056|dbj|GAA85671.1| GATA transcription factor LreA [Aspergillus kawachii IFO 4308]
Length = 881
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 59/108 (54%), Gaps = 13/108 (12%)
Query: 245 ISLGRIKQS--FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD------ 296
I++G + S FVL D L D P+VY S+AF +LTGY E+VGQNCRFL G D
Sbjct: 313 INIGAVDLSCAFVLCDITLEDHPIVYVSEAFERLTGYTNQEIVGQNCRFLQGPDGVVQRG 372
Query: 297 -----TDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIR 339
D Y+++ +I+ I+NYRK F NL+ + PIR
Sbjct: 373 MQRKFVDENTAYRLRSTIEERTEIQASIINYRKGGQPFVNLITMLPIR 420
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPR-----------TNRRT 78
+F + D ++ HPIV+ S F +++G++ EI+G+N R QGP + T
Sbjct: 323 AFVLCDITLEDHPIVYVSEAFERLTGYTNQEIVGQNCRFLQGPDGVVQRGMQRKFVDENT 382
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPFWMLFKM-SLVFGKEDGRATHFVAVQVPIV 134
+R I E I+ +++NY+K G PF L M + +G D R +V QV +V
Sbjct: 383 AYRLRSTIEERTEIQASIINYRKGGQPFVNLITMLPIRWGGSDYR--FYVGFQVDLV 437
>gi|134078226|emb|CAK96807.1| unnamed protein product [Aspergillus niger]
Length = 501
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 60/96 (62%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+ + F L DP D P+V+AS+ F + T Y + V+G+NCRFL G T+ + +IKE+I
Sbjct: 278 LAEVFCLTDPSRRDNPIVFASEEFHRTTQYGMDYVLGRNCRFLQGPKTNANSVRRIKEAI 337
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ + + LNYR+D S F NLL +P+ ++ G+V
Sbjct: 338 EAGRHHSELFLNYRRDGSPFMNLLQCAPLCDSHGRV 373
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L + F +TDPS +PIVFAS F + + + ++GRN R QGP+TN ++ I+EAI
Sbjct: 278 LAEVFCLTDPSRRDNPIVFASEEFHRTTQYGMDYVLGRNCRFLQGPKTNANSVRRIKEAI 337
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
R LNY++DG+PF L + + + GR +F+ Q+ +
Sbjct: 338 EAGRHHSELFLNYRRDGSPFMNLLQCAPLCDSH-GRVRYFIGAQIDV 383
>gi|379735862|ref|YP_005329368.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(S) [Blastococcus saxobsidens DD2]
gi|378783669|emb|CCG03337.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(S) [Blastococcus saxobsidens DD2]
Length = 762
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L ++ + D LPD P+VY ++AF +L G R V+G+NCRFL DTD +
Sbjct: 447 LRSAMAATTSGVTIADMRLPDQPLVYVNEAFEQLAGLPRAAVLGRNCRFLQSPDTDPAAV 506
Query: 303 YQIKESIQTEQACTVRILNYR-KDKSSFWNLLHISPIRNASGKV 345
+I+ +I + C +LN R D+ +WN +H++P+ + G +
Sbjct: 507 TRIRAAIDRGEECRETVLNVRGPDRQPWWNEVHLAPVFDTDGTL 550
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Query: 32 TITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91
TI D + P+V+ + F +++G RA ++GRN R Q P T+ + IR AI
Sbjct: 459 TIADMRLPDQPLVYVNEAFEQLAGLPRAAVLGRNCRFLQSPDTDPAAVTRIRAAIDRGEE 518
Query: 92 IEVNLLNYK-KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
+LN + D P+W ++ VF DG H++ VQ + +R
Sbjct: 519 CRETVLNVRGPDRQPWWNEVHLAPVF-DTDGTLAHYIGVQHDVTAR 563
>gi|350631731|gb|EHA20102.1| hypothetical protein ASPNIDRAFT_119885 [Aspergillus niger ATCC
1015]
Length = 745
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 54/98 (55%), Gaps = 11/98 (11%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD-----------TDTTV 301
+FVL D L D P+VY S+AF +LTGY E+VGQNCRFL G D D
Sbjct: 197 AFVLCDITLEDHPIVYVSEAFERLTGYTNQEIVGQNCRFLQGPDGVVQRGMQRKFVDENT 256
Query: 302 LYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIR 339
Y+++ +I+ I+NYRK F NL+ + PIR
Sbjct: 257 AYRLRSTIEERTEIQASIINYRKGGQPFVNLITMIPIR 294
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPR-----------TNRRT 78
+F + D ++ HPIV+ S F +++G++ EI+G+N R QGP + T
Sbjct: 197 AFVLCDITLEDHPIVYVSEAFERLTGYTNQEIVGQNCRFLQGPDGVVQRGMQRKFVDENT 256
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPFWMLFKM-SLVFGKEDGRATHFVAVQVPIV 134
+R I E I+ +++NY+K G PF L M + +G D R +V QV +V
Sbjct: 257 AYRLRSTIEERTEIQASIINYRKGGQPFVNLITMIPIRWGGSDYR--FYVGFQVDLV 311
>gi|398804176|ref|ZP_10563175.1| PAS domain S-box, partial [Polaromonas sp. CF318]
gi|398094496|gb|EJL84857.1| PAS domain S-box, partial [Polaromonas sp. CF318]
Length = 985
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Query: 40 GHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNY 99
G IVF + F + +G++R E++GR R+ QGPRT R + IR A++ +P+ L+NY
Sbjct: 211 GPRIVFVNDAFERRTGYTREEVLGRTPRLLQGPRTQRAELERIRAALQSWQPVRAELINY 270
Query: 100 KKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
KD FW+ + + GR TH+VAV+ I RK +
Sbjct: 271 TKDRQEFWLDLDI-VPIADAKGRYTHWVAVERDITQRKRAEQA 312
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILN 321
P +V+ +DAF + TGY R EV+G+ R L G T L +I+ ++Q+ Q ++N
Sbjct: 210 PGPRIVFVNDAFERRTGYTREEVLGRTPRLLQGPRTQRAELERIRAALQSWQPVRAELIN 269
Query: 322 YRKDKSSFWNLLHISPIRNASGK 344
Y KD+ FW L I PI +A G+
Sbjct: 270 YTKDRQEFWLDLDIVPIADAKGR 292
>gi|302887252|ref|XP_003042514.1| hypothetical protein NECHADRAFT_42185 [Nectria haematococca mpVI
77-13-4]
gi|256723426|gb|EEU36801.1| hypothetical protein NECHADRAFT_42185 [Nectria haematococca mpVI
77-13-4]
Length = 592
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 58/96 (60%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+ + F L DP PD P+V+AS+ F + T Y N +G+NCRFL G T+ + +I+E +
Sbjct: 222 LAEVFCLSDPSRPDNPIVFASEEFHRTTQYGMNYAIGRNCRFLQGPKTNPFSVRRIREKL 281
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345
+ + LNYR+D S F NLL ++P+ ++ G V
Sbjct: 282 EAGKEHCETFLNYRRDGSPFMNLLMVAPLYDSRGVV 317
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 52/90 (57%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAI 86
L + F ++DPS +PIVFAS F + + + IGRN R QGP+TN ++ IRE +
Sbjct: 222 LAEVFCLSDPSRPDNPIVFASEEFHRTTQYGMNYAIGRNCRFLQGPKTNPFSVRRIREKL 281
Query: 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVF 116
+ LNY++DG+PF L ++ ++
Sbjct: 282 EAGKEHCETFLNYRRDGSPFMNLLMVAPLY 311
>gi|428310682|ref|YP_007121659.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428252294|gb|AFZ18253.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 1120
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 68/117 (58%), Gaps = 4/117 (3%)
Query: 29 DSFTITDPSISGHP---IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85
D+ IT+ P I++ + F +M+G+++AE++G+ R+ QGP++ + + R A
Sbjct: 185 DAIMITEAEPIEEPGPRIIYVNEAFTRMTGYTQAEVLGKTPRILQGPKSPCAQLDQFRSA 244
Query: 86 IREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
+++ +P V L+NY+KDG+ FW+ V E G TH+VAV+ I RK ++
Sbjct: 245 LKQWQPTVVELINYRKDGSEFWVEISTVPVANAE-GWYTHWVAVERDITERKRAEDT 300
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%)
Query: 262 PDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILN 321
P ++Y ++AF ++TGY + EV+G+ R L G + L Q + +++ Q V ++N
Sbjct: 198 PGPRIIYVNEAFTRMTGYTQAEVLGKTPRILQGPKSPCAQLDQFRSALKQWQPTVVELIN 257
Query: 322 YRKDKSSFWNLLHISPIRNASG 343
YRKD S FW + P+ NA G
Sbjct: 258 YRKDGSEFWVEISTVPVANAEG 279
>gi|297592170|gb|ADI46954.1| AMPKR1m [Volvox carteri f. nagariensis]
Length = 969
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 61/114 (53%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83
++ + S T++DP G+P+ + S GFL M+G++ E +GRN + Q + + T +R
Sbjct: 105 MENVLSSLTVSDPIEDGNPLCYVSPGFLSMTGYTEEECLGRNCKFLQAGKIDPATHELLR 164
Query: 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
AI E R + + NY+KDG PF L + V G HFV VQ + R+
Sbjct: 165 SAITERRFATIEVTNYRKDGRPFQNLLSLLPVLGAGSDSLLHFVGVQCDLDERR 218
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
+ S + DP P+ Y S FL +TGY E +G+NC+FL D ++ +I
Sbjct: 108 VLSSLTVSDPIEDGNPLCYVSPGFLSMTGYTEEECLGRNCKFLQAGKIDPATHELLRSAI 167
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
+ T+ + NYRKD F NLL + P+ A L
Sbjct: 168 TERRFATIEVTNYRKDGRPFQNLLSLLPVLGAGSDSL 204
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%)
Query: 47 SRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106
S GF ++G+S+++++G + GP T + + ++ + + V +L YK+DGTPF
Sbjct: 294 SPGFTVLTGYSQSDVLGWSLLCLCGPETAEKEMRKLITSQWAHSSVAVKMLCYKRDGTPF 353
Query: 107 WML 109
W L
Sbjct: 354 WAL 356
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%)
Query: 266 MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKD 325
+ S F LTGY +++V+G + L G +T + ++ S + V++L Y++D
Sbjct: 290 LCAVSPGFTVLTGYSQSDVLGWSLLCLCGPETAEKEMRKLITSQWAHSSVAVKMLCYKRD 349
Query: 326 KSSFWNLLHISPIRNA 341
+ FW L+ P+ ++
Sbjct: 350 GTPFWALVLSCPLSSS 365
>gi|374622069|ref|ZP_09694597.1| sensory box protein [Ectothiorhodospira sp. PHS-1]
gi|373941198|gb|EHQ51743.1| sensory box protein [Ectothiorhodospira sp. PHS-1]
Length = 159
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 54/83 (65%)
Query: 263 DMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322
D ++Y ++ F +LTGY +E++ Q+CRFL D D T L QI+++++ C VR+ NY
Sbjct: 32 DTILIYVNEGFERLTGYRADEILYQDCRFLQNDDRDQTALAQIRDAMERGIPCRVRLRNY 91
Query: 323 RKDKSSFWNLLHISPIRNASGKV 345
RKD S FWN L I+P+ N ++
Sbjct: 92 RKDGSLFWNELSITPVFNDEDRL 114
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82
A+D D TI + +++ + GF +++G+ EI+ ++ R Q ++ + +I
Sbjct: 15 AVDACNDGVTIAEREGEDTILIYVNEGFERLTGYRADEILYQDCRFLQNDDRDQTALAQI 74
Query: 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136
R+A+ P V L NY+KDG+ FW ++ VF ED R T+++ +Q I +
Sbjct: 75 RDAMERGIPCRVRLRNYRKDGSLFWNELSITPVFNDED-RLTYYIGIQKDITDQ 127
>gi|333944373|pdb|3P7N|A Chain A, Crystal Structure Of Light Activated Transcription Factor
El222 From Erythrobacter Litoralis
gi|333944374|pdb|3P7N|B Chain B, Crystal Structure Of Light Activated Transcription Factor
El222 From Erythrobacter Litoralis
Length = 258
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 73/130 (56%), Gaps = 3/130 (2%)
Query: 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRT 78
WV + ++ P + ++DP ++ +P++ ++ F ++G+S E +GRN R G T
Sbjct: 64 WVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWL 123
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
+IR+ +RE +P+ V +LNYKKDGTPF ++ ++ +D +F+ QV + +
Sbjct: 124 TDKIRQGVREHKPVLVEILNYKKDGTPFRNAVLVAPIY-DDDDELLYFLGSQVEVDDDQP 182
Query: 139 MRNSGMSYSE 148
N GM+ E
Sbjct: 183 --NMGMARRE 190
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
V+ DP L D P++ + AF LTGY E VG+NCRFL G T+ + +I++ ++ +
Sbjct: 77 VVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKP 136
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKVL 346
V ILNY+KD + F N + ++PI + ++L
Sbjct: 137 VLVEILNYKKDGTPFRNAVLVAPIYDDDDELL 168
>gi|156039633|ref|XP_001586924.1| hypothetical protein SS1G_11953 [Sclerotinia sclerotiorum 1980]
gi|154697690|gb|EDN97428.1| hypothetical protein SS1G_11953 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 941
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 61/107 (57%), Gaps = 13/107 (12%)
Query: 245 ISLGRIKQS--FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG-------- 294
I++G + S FV+ D PD P++Y SD F LTGY R+EV+G+NCRFL
Sbjct: 316 INIGAVDLSCAFVVCDLREPDCPIIYVSDVFENLTGYSRHEVLGRNCRFLQSPEGKIQAG 375
Query: 295 ---VDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
+DT+ +Y++K++I T I+NYRK F NLL + PI
Sbjct: 376 ERRLDTENDKVYELKKAIDTRTETQQAIINYRKGGQPFMNLLTMIPI 422
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 12/124 (9%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPR-----------TNRRT 78
+F + D PI++ S F ++G+SR E++GRN R Q P T
Sbjct: 326 AFVVCDLREPDCPIIYVSDVFENLTGYSRHEVLGRNCRFLQSPEGKIQAGERRLDTENDK 385
Query: 79 IMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHF-VAVQVPIVSRK 137
+ E+++AI + ++NY+K G PF L M + +D V QV +V+
Sbjct: 386 VYELKKAIDTRTETQQAIINYRKGGQPFMNLLTMIPIPASDDDPTLSLVVGFQVDVVANP 445
Query: 138 HMRN 141
+ N
Sbjct: 446 NSVN 449
>gi|148358372|ref|YP_001249579.1| GGDEF/EAL domain-containing sensory box protein [Legionella
pneumophila str. Corby]
gi|296105722|ref|YP_003617422.1| sensory box protein [Legionella pneumophila 2300/99 Alcoy]
gi|148280145|gb|ABQ54233.1| sensory box (GGDEF/EAL domain) [Legionella pneumophila str. Corby]
gi|295647623|gb|ADG23470.1| sensory box protein [Legionella pneumophila 2300/99 Alcoy]
Length = 292
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 74/123 (60%), Gaps = 7/123 (5%)
Query: 22 EALDELPDSFTIT--DP--SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRR 77
+ +DE D IT DP + +G +V+ ++ F K+S + EIIG+ R+ QG TN+
Sbjct: 11 QLIDETSDMVIITKADPLDAPNGPEVVWVNKAFEKISKYKANEIIGQTPRILQGKETNQN 70
Query: 78 TIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKE-DGRATHFVAVQVPIVSR 136
T+ IREA++ + I V LLNY KDGTP+W+ F S+V+ ++ G + A++ I +
Sbjct: 71 TLKMIREAMKAQTSINVELLNYTKDGTPYWINF--SIVYLRDGQGNLCYLGAIERDITAI 128
Query: 137 KHM 139
K++
Sbjct: 129 KNL 131
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 258 DP-HLPDMP-MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315
DP P+ P +V+ + AF K++ Y NE++GQ R L G +T+ L I+E+++ + +
Sbjct: 26 DPLDAPNGPEVVWVNKAFEKISKYKANEIIGQTPRILQGKETNQNTLKMIREAMKAQTSI 85
Query: 316 TVRILNYRKDKSSFWNLLHISPIRNASGKV 345
V +LNY KD + +W I +R+ G +
Sbjct: 86 NVELLNYTKDGTPYWINFSIVYLRDGQGNL 115
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,394,767,725
Number of Sequences: 23463169
Number of extensions: 219804221
Number of successful extensions: 463335
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3783
Number of HSP's successfully gapped in prelim test: 1085
Number of HSP's that attempted gapping in prelim test: 451024
Number of HSP's gapped (non-prelim): 10974
length of query: 346
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 203
effective length of database: 9,003,962,200
effective search space: 1827804326600
effective search space used: 1827804326600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 77 (34.3 bits)