Query 019110
Match_columns 346
No_of_seqs 331 out of 1357
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 11:03:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019110.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019110hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ewk_A Sensor protein; PAS dom 100.0 8.5E-36 2.9E-40 241.2 25.4 213 30-346 1-219 (227)
2 4f3l_A Mclock, circadian locom 99.9 9.3E-24 3.2E-28 181.2 18.9 221 17-345 85-343 (361)
3 4f3l_B BMAL1B; BHLH, PAS, circ 99.9 2.5E-22 8.7E-27 173.6 18.0 92 251-345 278-371 (387)
4 4hia_A LOV protein; PAS, HTH, 99.9 7.2E-23 2.5E-27 158.4 11.9 148 15-163 4-151 (176)
5 3rty_A Period circadian protei 99.9 4.1E-22 1.4E-26 167.6 16.8 201 31-343 6-248 (339)
6 2gj3_A Nitrogen fixation regul 99.9 5E-21 1.7E-25 138.2 15.0 118 16-137 3-120 (120)
7 3f1p_B ARYL hydrocarbon recept 99.8 3E-20 1E-24 134.2 11.9 116 19-138 3-120 (121)
8 1n9l_A PHOT-LOV1, putative blu 99.8 1.6E-19 5.4E-24 127.9 13.9 109 26-135 1-109 (109)
9 4dj3_A Period circadian protei 99.8 1.7E-18 5.7E-23 144.1 20.5 89 252-343 175-266 (317)
10 3mr0_A Sensory box histidine k 99.8 6.8E-20 2.3E-24 136.4 10.6 125 15-143 6-132 (142)
11 3p7n_A Sensor histidine kinase 99.8 1.6E-19 5.5E-24 148.5 12.5 124 15-139 60-183 (258)
12 4dj2_A Period circadian protei 99.8 5.5E-19 1.9E-23 147.2 15.7 88 252-342 177-266 (320)
13 2pr5_A Blue-light photorecepto 99.8 1.5E-19 5E-24 132.7 10.8 119 22-143 3-121 (132)
14 3gdi_A Period circadian protei 99.8 2E-18 6.8E-23 143.3 18.2 87 253-342 167-255 (309)
15 3ue6_A Aureochrome1; PAS/LOV d 99.8 3.6E-19 1.2E-23 135.9 12.0 124 15-139 32-155 (166)
16 2gj3_A Nitrogen fixation regul 99.8 9E-19 3.1E-23 126.2 13.2 103 240-345 4-106 (120)
17 3f1p_A Endothelial PAS domain- 99.8 2.1E-19 7.1E-24 128.9 9.1 109 27-139 8-117 (117)
18 1n9l_A PHOT-LOV1, putative blu 99.8 1E-18 3.5E-23 123.7 12.2 96 250-345 2-97 (109)
19 3t50_A Blue-light-activated hi 99.8 1.4E-18 4.8E-23 126.5 12.0 120 23-143 2-121 (128)
20 3nja_A Probable ggdef family p 99.8 1.1E-18 3.9E-23 126.1 10.7 120 15-138 4-125 (125)
21 4eet_B Phototropin-2; LOV, blu 99.8 7.8E-18 2.7E-22 119.7 14.1 114 23-137 2-115 (115)
22 3mqq_A Transcriptional regulat 99.8 1.7E-18 5.9E-23 124.7 9.8 115 19-139 4-119 (120)
23 3f1p_B ARYL hydrocarbon recept 99.8 4.7E-18 1.6E-22 122.6 11.0 99 244-345 5-105 (121)
24 1d06_A Nitrogen fixation regul 99.8 6.5E-18 2.2E-22 123.5 11.8 124 4-134 3-130 (130)
25 3lyx_A Sensory BOX/ggdef domai 99.8 1.8E-17 6.3E-22 119.0 13.9 121 15-139 4-124 (124)
26 3h9w_A Diguanylate cyclase wit 99.8 2.8E-18 9.6E-23 122.6 9.2 111 27-140 2-113 (115)
27 2r78_A Sensor protein; sensory 99.7 6.5E-17 2.2E-21 115.9 14.8 110 15-134 8-117 (117)
28 2z6d_A Phototropin-2; PAS-fold 99.7 6.5E-17 2.2E-21 117.0 14.2 122 15-140 3-127 (130)
29 3mxq_A Sensor protein; PSI2, M 99.7 1.8E-17 6.3E-22 123.4 10.0 120 15-139 19-150 (152)
30 3luq_A Sensor protein; PAS, hi 99.7 5.8E-17 2E-21 115.0 12.2 113 17-134 2-114 (114)
31 3sw1_A Sensory box protein; li 99.7 2.6E-17 8.9E-22 125.0 10.9 125 15-143 22-149 (162)
32 3icy_A Sensor protein; sensory 99.7 2.6E-17 8.9E-22 117.8 9.8 115 16-134 2-118 (118)
33 2vv6_A FIXL, sensor protein FI 99.7 4.5E-17 1.5E-21 117.1 11.0 112 26-143 1-116 (119)
34 3f1p_A Endothelial PAS domain- 99.7 1.8E-17 6.1E-22 118.7 8.8 93 250-345 8-101 (117)
35 2r78_A Sensor protein; sensory 99.7 9.5E-17 3.3E-21 115.0 12.0 101 235-339 5-105 (117)
36 2vlg_A Sporulation kinase A; h 99.7 4E-17 1.4E-21 115.2 9.2 93 245-343 3-95 (111)
37 2wkq_A NPH1-1, RAS-related C3 99.7 1.1E-16 3.8E-21 136.5 12.8 120 21-141 14-133 (332)
38 4hia_A LOV protein; PAS, HTH, 99.7 1.8E-16 6.2E-21 122.2 12.4 105 241-345 7-111 (176)
39 2kdk_A ARYL hydrocarbon recept 99.7 2.8E-16 9.6E-21 113.1 12.4 112 22-137 7-120 (121)
40 3k3c_A Protein RV1364C/MT1410; 99.7 9.7E-17 3.3E-21 121.4 10.1 120 15-140 14-139 (158)
41 3p7n_A Sensor histidine kinase 99.7 2.8E-16 9.5E-21 129.1 13.4 111 235-345 57-167 (258)
42 3kx0_X Uncharacterized protein 99.7 1.4E-16 4.8E-21 123.9 10.9 122 15-142 34-161 (185)
43 2pr5_A Blue-light photorecepto 99.7 3.5E-16 1.2E-20 114.5 11.9 98 245-342 3-100 (132)
44 3ue6_A Aureochrome1; PAS/LOV d 99.7 4.8E-16 1.7E-20 118.3 12.7 114 232-345 26-139 (166)
45 3ewk_A Sensor protein; PAS dom 99.7 5.4E-16 1.8E-20 124.8 13.6 111 18-132 111-227 (227)
46 2kdk_A ARYL hydrocarbon recept 99.7 3.1E-16 1.1E-20 112.8 10.6 95 246-343 8-103 (121)
47 3mr0_A Sensory box histidine k 99.7 4.2E-16 1.4E-20 115.7 11.5 108 235-345 3-112 (142)
48 3eeh_A Putative light and redo 99.7 2.7E-16 9.2E-21 113.1 9.9 120 10-134 4-125 (125)
49 3bwl_A Sensor protein; structu 99.7 1.8E-15 6E-20 109.7 13.6 120 5-134 5-126 (126)
50 1d06_A Nitrogen fixation regul 99.7 3.6E-16 1.2E-20 114.2 9.8 101 240-343 15-119 (130)
51 4eet_B Phototropin-2; LOV, blu 99.7 1.4E-15 4.7E-20 107.9 12.6 100 246-345 2-101 (115)
52 2v0u_A NPH1-1, LOV2; kinase, t 99.7 9.7E-16 3.3E-20 113.3 12.0 116 20-139 4-122 (146)
53 3mfx_A Sensory BOX/ggdef famil 99.7 4.5E-16 1.5E-20 113.1 9.0 99 241-342 7-112 (129)
54 3nja_A Probable ggdef family p 99.6 6.5E-16 2.2E-20 111.4 9.0 107 236-345 2-110 (125)
55 3icy_A Sensor protein; sensory 99.6 5.3E-16 1.8E-20 110.8 8.3 103 240-345 3-107 (118)
56 4eho_A Bacteriophytochrome, PA 99.6 2.5E-16 8.4E-21 144.6 7.8 118 17-139 517-634 (635)
57 3mjq_A Uncharacterized protein 99.6 6.6E-16 2.3E-20 111.7 8.5 117 21-144 2-118 (126)
58 3olo_A Two-component sensor hi 99.6 3.2E-15 1.1E-19 106.7 11.5 107 17-134 12-118 (118)
59 1byw_A Protein (human ERG pota 99.6 1E-14 3.5E-19 102.0 13.5 107 29-136 2-110 (110)
60 3luq_A Sensor protein; PAS, hi 99.6 3E-15 1E-19 106.0 10.8 102 240-345 2-103 (114)
61 3t50_A Blue-light-activated hi 99.6 4.9E-15 1.7E-19 107.5 11.9 100 246-345 2-101 (128)
62 3mqq_A Transcriptional regulat 99.6 2.3E-15 8E-20 108.1 9.8 96 243-343 5-101 (120)
63 2l0w_A Potassium voltage-gated 99.6 1.3E-14 4.4E-19 106.2 13.8 117 19-136 20-138 (138)
64 3h9w_A Diguanylate cyclase wit 99.6 1.3E-15 4.3E-20 108.6 7.8 94 250-345 2-96 (115)
65 1v9y_A Heme PAS sensor protein 99.6 2.9E-15 1E-19 113.9 10.3 123 15-143 37-163 (167)
66 3eeh_A Putative light and redo 99.6 3.8E-15 1.3E-19 107.0 9.6 109 233-345 3-114 (125)
67 3lyx_A Sensory BOX/ggdef domai 99.6 2.2E-14 7.6E-19 102.6 12.8 104 239-345 5-108 (124)
68 3d72_A Vivid PAS protein VVD; 99.6 1.1E-14 3.7E-19 108.8 11.1 98 247-345 32-140 (149)
69 3d72_A Vivid PAS protein VVD; 99.6 6.4E-15 2.2E-19 110.0 9.4 111 20-132 28-149 (149)
70 2wkq_A NPH1-1, RAS-related C3 99.6 1.3E-14 4.6E-19 123.6 12.3 100 246-345 16-115 (332)
71 2z6d_A Phototropin-2; PAS-fold 99.6 4.4E-14 1.5E-18 101.9 12.6 104 239-345 4-110 (130)
72 3olo_A Two-component sensor hi 99.6 1.6E-14 5.6E-19 102.9 10.1 96 240-343 12-107 (118)
73 3mfx_A Sensory BOX/ggdef famil 99.6 2.1E-14 7.1E-19 104.2 10.3 111 18-135 7-124 (129)
74 3fc7_A HTR-like protein, senso 99.6 4.8E-15 1.6E-19 107.0 7.0 108 16-134 17-125 (125)
75 2vv6_A FIXL, sensor protein FI 99.6 2.3E-14 7.8E-19 102.7 9.9 91 250-343 2-96 (119)
76 3mxq_A Sensor protein; PSI2, M 99.5 1.2E-14 4.1E-19 108.1 7.5 100 242-345 23-134 (152)
77 3fg8_A Uncharacterized protein 99.5 8.6E-15 3E-19 104.8 6.3 110 15-136 9-118 (118)
78 3sw1_A Sensory box protein; li 99.5 8.8E-14 3E-18 105.2 11.9 105 238-345 22-129 (162)
79 3vol_A Aerotaxis transducer AE 99.5 1.1E-13 3.7E-18 111.4 11.7 110 16-139 20-141 (233)
80 3bwl_A Sensor protein; structu 99.5 2.9E-14 1E-18 103.1 7.6 98 237-340 13-112 (126)
81 2vlg_A Sporulation kinase A; h 99.5 4.8E-14 1.6E-18 99.3 8.1 93 22-121 3-95 (111)
82 4f3l_B BMAL1B; BHLH, PAS, circ 99.5 5.3E-14 1.8E-18 121.6 9.0 106 30-138 280-386 (387)
83 4f3l_A Mclock, circadian locom 99.5 2.5E-14 8.5E-19 122.7 6.5 106 30-139 253-359 (361)
84 2qkp_A Uncharacterized protein 99.5 3.9E-13 1.3E-17 100.1 11.6 119 17-142 18-139 (151)
85 1byw_A Protein (human ERG pota 99.5 7.5E-13 2.6E-17 92.3 12.5 94 252-345 2-97 (110)
86 4hi4_A Aerotaxis transducer AE 99.5 6.9E-13 2.4E-17 95.3 12.1 106 17-136 4-121 (121)
87 2v0u_A NPH1-1, LOV2; kinase, t 99.5 1.2E-12 4.3E-17 96.3 13.1 102 244-345 5-106 (146)
88 2l0w_A Potassium voltage-gated 99.4 2.3E-12 7.9E-17 93.9 13.5 105 241-345 19-125 (138)
89 3k3c_A Protein RV1364C/MT1410; 99.4 4.4E-13 1.5E-17 101.0 9.4 101 240-345 16-122 (158)
90 1ll8_A PAS kinase; PAS domain, 99.4 9.8E-14 3.4E-18 98.5 4.3 91 249-343 6-102 (114)
91 3mjq_A Uncharacterized protein 99.4 1.2E-12 4E-17 94.3 9.0 93 245-341 3-95 (126)
92 3kx0_X Uncharacterized protein 99.4 1.7E-12 5.9E-17 100.6 9.6 101 240-345 36-142 (185)
93 3b33_A Sensor protein; structu 99.4 2.4E-12 8.1E-17 91.3 8.9 94 243-343 9-103 (115)
94 3b33_A Sensor protein; structu 99.4 3.4E-12 1.2E-16 90.5 9.5 106 20-134 9-115 (115)
95 3rty_A Period circadian protei 99.4 1.2E-11 3.9E-16 104.2 13.4 108 28-138 154-266 (339)
96 1v9y_A Heme PAS sensor protein 99.3 5.1E-12 1.7E-16 95.7 9.9 104 237-344 36-143 (167)
97 3fg8_A Uncharacterized protein 99.3 3.4E-12 1.2E-16 91.1 7.7 93 243-340 14-106 (118)
98 4eho_A Bacteriophytochrome, PA 99.3 1.1E-12 3.6E-17 120.6 6.2 100 243-346 520-619 (635)
99 1ll8_A PAS kinase; PAS domain, 99.3 2.2E-12 7.7E-17 91.4 6.4 103 26-134 6-113 (114)
100 1nwz_A PYP, photoactive yellow 99.3 1.6E-11 5.6E-16 86.3 10.5 95 244-344 20-116 (125)
101 3fc7_A HTR-like protein, senso 99.3 3.4E-12 1.2E-16 91.8 6.8 95 239-342 17-112 (125)
102 1mzu_A PPR; photoactive yellow 99.3 2.2E-11 7.6E-16 85.7 10.7 93 246-344 27-121 (129)
103 3cax_A Uncharacterized protein 99.3 2.1E-11 7.1E-16 104.7 11.8 117 16-142 237-353 (369)
104 2w0n_A Sensor protein DCUS; si 99.3 4.7E-12 1.6E-16 89.9 5.3 104 15-134 12-118 (118)
105 3a0r_A Sensor protein; four he 99.2 6.1E-12 2.1E-16 107.8 5.6 118 15-143 5-123 (349)
106 4hi4_A Aerotaxis transducer AE 99.2 8.7E-11 3E-15 84.1 10.3 92 241-345 5-108 (121)
107 2qkp_A Uncharacterized protein 99.2 4.7E-11 1.6E-15 88.7 8.9 101 239-345 17-120 (151)
108 2jhe_A Transcription regulator 99.2 3.4E-11 1.2E-15 93.7 7.2 108 15-138 77-190 (190)
109 1nwz_A PYP, photoactive yellow 99.2 4.6E-10 1.6E-14 78.9 12.2 99 21-126 20-120 (125)
110 1mzu_A PPR; photoactive yellow 99.2 2.5E-10 8.6E-15 80.4 10.7 99 21-126 25-125 (129)
111 3a0s_A Sensor protein; PAS-fol 99.2 3E-10 1E-14 76.7 10.6 95 27-132 1-96 (96)
112 4dj3_A Period circadian protei 99.2 2.1E-10 7.3E-15 95.4 11.6 104 31-137 177-283 (317)
113 3a0s_A Sensor protein; PAS-fol 99.2 2.6E-10 8.8E-15 77.1 9.5 85 250-344 1-85 (96)
114 3vol_A Aerotaxis transducer AE 99.1 3E-10 1E-14 91.2 11.0 93 240-345 21-125 (233)
115 3gdi_A Period circadian protei 99.1 6E-10 2.1E-14 92.5 10.8 104 31-137 168-273 (309)
116 4dj2_A Period circadian protei 99.1 4.2E-10 1.4E-14 93.8 9.7 104 31-137 179-284 (320)
117 2w0n_A Sensor protein DCUS; si 99.0 2.6E-10 8.8E-15 80.7 5.0 94 237-345 11-107 (118)
118 3cax_A Uncharacterized protein 98.9 5.6E-09 1.9E-13 89.5 9.7 100 237-345 235-334 (369)
119 2jhe_A Transcription regulator 98.9 3E-08 1E-12 76.8 11.7 92 237-343 76-169 (190)
120 3a0r_A Sensor protein; four he 98.8 3E-09 1E-13 91.0 5.3 94 241-344 8-101 (349)
121 1oj5_A Steroid receptor coacti 98.7 4.6E-08 1.6E-12 68.4 6.0 85 253-341 9-97 (132)
122 2ykf_A Pdtas, probable sensor 98.1 3.5E-09 1.2E-13 88.2 0.0 87 246-341 175-270 (305)
123 2ykf_A Pdtas, probable sensor 98.1 3.9E-09 1.3E-13 87.9 0.0 109 24-143 176-293 (305)
124 1oj5_A Steroid receptor coacti 98.4 5.2E-07 1.8E-11 63.0 5.2 96 40-136 16-115 (132)
125 2ool_A Sensor protein; bacteri 96.3 0.0066 2.3E-07 50.7 5.8 77 253-335 43-124 (337)
126 2ool_A Sensor protein; bacteri 94.6 0.029 1E-06 46.8 4.1 41 32-74 46-86 (337)
127 4ew7_A Conjugative transfer: r 92.3 1.6 5.4E-05 28.6 10.9 34 243-279 22-55 (127)
128 4dah_A Sporulation kinase D; a 91.8 2.8 9.4E-05 32.2 11.4 94 16-135 56-151 (217)
129 4ew7_A Conjugative transfer: r 91.1 0.65 2.2E-05 30.4 5.5 35 20-57 22-56 (127)
130 3s7o_A Bacteriophytochrome; bi 86.7 0.84 2.9E-05 38.0 4.9 40 254-295 55-94 (343)
131 4e04_A Bacteriophytochrome (li 86.5 3.4 0.00012 34.2 8.3 40 253-295 31-70 (327)
132 3lif_A Putative diguanylate cy 79.8 20 0.00068 28.0 10.5 93 16-134 56-152 (254)
133 4e04_A Bacteriophytochrome (li 78.0 8.3 0.00028 31.9 7.5 51 31-88 32-82 (327)
134 3s7o_A Bacteriophytochrome; bi 76.2 1.9 6.4E-05 35.9 3.2 40 31-72 55-94 (343)
135 3clo_A Transcriptional regulat 73.3 18 0.00061 28.7 8.3 32 251-284 43-74 (258)
136 3e4o_A C4-dicarboxylate transp 71.2 41 0.0014 27.4 11.8 95 16-135 100-195 (305)
137 3zq5_A Phytochrome-like protei 66.1 2.9 9.8E-05 37.2 2.3 41 254-296 32-72 (520)
138 3nhq_A Bacteriophytochrome; ph 64.4 14 0.00047 32.8 6.2 48 254-310 29-77 (505)
139 3tvk_A DGC, diguanylate cyclas 63.1 1.4 4.8E-05 33.0 -0.2 41 145-185 3-43 (179)
140 2hje_A Autoinducer 2 sensor ki 63.0 49 0.0017 25.3 9.0 83 24-131 58-140 (221)
141 4dah_A Sporulation kinase D; a 62.5 24 0.00083 26.7 6.9 83 238-345 55-139 (217)
142 3zq5_A Phytochrome-like protei 60.7 3.2 0.00011 36.8 1.7 41 31-73 32-72 (520)
143 3c38_A Autoinducer 2 sensor ki 60.2 62 0.0021 25.6 9.1 85 24-133 77-161 (270)
144 3pxp_A Helix-turn-helix domain 47.5 30 0.001 28.0 5.2 37 16-55 97-133 (292)
145 1p0z_A Sensor kinase CITA; tra 44.1 74 0.0025 21.7 10.1 26 109-135 102-127 (131)
146 3nhq_A Bacteriophytochrome; ph 40.5 65 0.0022 28.5 6.6 36 31-71 29-65 (505)
147 1l1o_C Replication protein A 7 39.4 82 0.0028 23.3 6.2 32 253-287 82-115 (181)
148 3pxp_A Helix-turn-helix domain 39.0 51 0.0017 26.7 5.3 38 238-278 96-133 (292)
149 3clo_A Transcriptional regulat 34.4 1.7E+02 0.0057 22.9 10.4 40 20-61 35-74 (258)
150 3bid_A UPF0339 protein NMB1088 32.8 35 0.0012 20.3 2.5 11 321-331 6-16 (64)
151 1vq8_K 50S ribosomal protein L 29.4 37 0.0013 23.7 2.5 25 321-345 80-104 (132)
152 3v2d_O 50S ribosomal protein L 27.7 42 0.0014 23.0 2.5 25 321-345 69-93 (122)
153 3u5e_V L17A, YL32, 60S ribosom 26.9 42 0.0014 23.5 2.5 26 321-346 85-110 (137)
154 3c8c_A Methyl-accepting chemot 26.5 2E+02 0.0069 21.4 7.2 27 107-134 118-145 (240)
155 3hva_A Protein FIMX; ggdef dig 26.4 20 0.00068 26.0 0.9 27 144-170 11-37 (177)
156 1whi_A Ribosomal protein L14; 23.2 36 0.0012 23.3 1.6 25 321-345 69-93 (122)
157 3lic_A Sensor protein; PDC fol 23.0 2.6E+02 0.009 21.5 10.4 27 107-135 145-171 (274)
158 2k7i_A UPF0339 protein ATU0232 22.7 76 0.0026 20.0 2.9 23 317-346 25-47 (83)
159 3qyy_A Response regulator; C-D 22.6 28 0.00095 25.0 1.0 27 144-170 9-35 (167)
160 3bbo_M Ribosomal protein L14; 22.4 34 0.0012 23.4 1.3 25 321-345 69-93 (121)
161 3lif_A Putative diguanylate cy 21.4 2.7E+02 0.0094 21.2 8.1 83 238-345 55-141 (254)
162 2v2f_A Penicillin binding prot 21.4 34 0.0011 15.8 0.8 11 336-346 7-17 (26)
No 1
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=100.00 E-value=8.5e-36 Score=241.18 Aligned_cols=213 Identities=21% Similarity=0.421 Sum_probs=190.4
Q ss_pred cEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceEEEEEeeeCCCCeEEEE
Q 019110 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWML 109 (346)
Q Consensus 30 ~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~~~ 109 (346)
.|+++|.+ |+|+++|++|++++||++++++|+++..+.++.........+.+.+..+..+..+++.+++||+.+|+.
T Consensus 1 ~i~i~D~~---g~i~~~N~a~~~l~Gy~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~ 77 (227)
T 3ewk_A 1 LVSITDLQ---GRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRRKDGTRYWVD 77 (227)
T ss_dssp CEEEEETT---CBEEEECHHHHHHTTCCHHHHTTSBGGGGCCSCSCHHHHHHHHHHHTTTCCEEEEEEEECSSSCEEEEE
T ss_pred CEEEECCC---CcEEehHHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCeEEEEEEEEcCCCCEEeee
Confidence 36788986 999999999999999999999999988777766666667777888888889999999999999999999
Q ss_pred eeecccccCCCCceeEEEEEeeccccccccccccccccccCCCCcchhhhccchhhhhhcchhhhhHhhhhcccCCCCCC
Q 019110 110 FKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLE 189 (346)
Q Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~DIT~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (346)
++..|+++ .+|.+.+++++.+|||++|+++ +
T Consensus 78 ~~~~p~~d-~~g~~~~~~~~~~DIT~~k~~e-------------------------~----------------------- 108 (227)
T 3ewk_A 78 STIVPLMD-NAGKPRQYISIRRDITAQKEAE-------------------------A----------------------- 108 (227)
T ss_dssp EEEEEEEC-SSSCEEEEEEEEEECTTTTHHH-------------------------H-----------------------
T ss_pred eEEEEEEc-CCCCEEEEEEEEEehhhHHHHH-------------------------H-----------------------
Confidence 99999999 9999999999999999999981 1
Q ss_pred ccccchhhHHHHHHHhhhhhhHHHhhhhcccccCeEEeeeEecCCCccchhHHHHHHHhccCCcEEEEcCCCCCCCeeee
Q 019110 190 IEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYA 269 (346)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~ 269 (346)
..+ .+..++++++++|+++|. +|+|+++
T Consensus 109 ----------~l~---------------------------------------~~~~~~~~~~~~i~~~d~---~g~i~~~ 136 (227)
T 3ewk_A 109 ----------QLA---------------------------------------RLKQAMDANSEMILLTDR---AGRIIYA 136 (227)
T ss_dssp ----------HHH---------------------------------------HHHHHHHTCCSEEEEECT---TSCEEEE
T ss_pred ----------HHH---------------------------------------HHHHHHhcCcCeEEEEcC---CCcEEEE
Confidence 111 134457888999999999 9999999
Q ss_pred cHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCceEEEEEeEecCCC------eEEEEEEeeeeecCCC
Q 019110 270 SDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKS------SFWNLLHISPIRNASG 343 (346)
Q Consensus 270 N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~------~~~~~~~~~~i~d~~G 343 (346)
|++|++++||+++|++|+++..+.++.+.......+.+.+..+++|.+|++.++|||+ .+|++++++|++|.+|
T Consensus 137 N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~G~~~~dg~~~~~~~~~~pi~d~~g 216 (227)
T 3ewk_A 137 NPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQPWSGRLLNRRRTGPAPHDAEDYWAEISTTPIHTDGN 216 (227)
T ss_dssp CHHHHHHHTCCTHHHHSSCGGGGBCTTSCHHHHHHHHHHHHHTCCEECCEEEEEECCSSSSCEEEEEEEEEEEEEECSSS
T ss_pred chHHHHHhCCCHHHHcCCChhhccCCCCCHHHHHHHHHHHHcCCceeEEEEEECCCCCcCcccceEEEEEEEEEEECCCC
Confidence 9999999999999999999999988888888889999999999999999999999997 8999999999999999
Q ss_pred ccC
Q 019110 344 KVL 346 (346)
Q Consensus 344 ~v~ 346 (346)
+++
T Consensus 217 ~~~ 219 (227)
T 3ewk_A 217 GLV 219 (227)
T ss_dssp CEE
T ss_pred CEE
Confidence 863
No 2
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.92 E-value=9.3e-24 Score=181.24 Aligned_cols=221 Identities=11% Similarity=0.028 Sum_probs=154.4
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCC------
Q 019110 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER------ 90 (346)
Q Consensus 17 ~~~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 90 (346)
.++...++++++..+++++.+ |+|+|+|+++..++||++++++|+++.++++|++.......+......+.
T Consensus 85 ~~~~~~~l~a~~~~i~v~~~~---G~i~yvs~~~~~~lGy~~~el~g~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~~ 161 (361)
T 4f3l_A 85 EEFTQLMLEALDGFFLAIMTD---GSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGEHSEVYKILSTHLLESDSLTPEY 161 (361)
T ss_dssp HHHHHHHHHHTTEEEEEEETT---SBEEEECTTHHHHHCCCHHHHTTSBGGGGSCGGGHHHHHHHHHHCCCCCCSSSCGG
T ss_pred HHHHHHHHHhcCceEEEEcCC---ccEEEEechhhhhcCCCHHHhcCCcHHHhcCHHHHHHHHHHhccCCCCCCCCCccc
Confidence 345567889999999999986 99999999999999999999999999999999987777666654332111
Q ss_pred -----ceEEEEEeeeCC------CCeEEEEeeeccccc--------------------CCCCceeEEEEEeecccccccc
Q 019110 91 -----PIEVNLLNYKKD------GTPFWMLFKMSLVFG--------------------KEDGRATHFVAVQVPIVSRKHM 139 (346)
Q Consensus 91 -----~~~~e~~~~~~d------g~~~~~~~~~~~~~~--------------------~~~g~~~~~~~~~~DIT~~k~~ 139 (346)
...+.+++.+.. +.+.++........- +..+...+++++.++++.+...
T Consensus 162 ~~~~~~~~f~cr~~~~~~~~~~~~~y~~i~~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~lvai~r~~~~~~~~ 241 (361)
T 4f3l_A 162 LKSKNQLEFCCHMLRGTIDPKEPSTYEYVRFIGNFKSLTSVSTSTHNGFEGTIQRTHRPSYEDRVCFVATVRLATPQFIK 241 (361)
T ss_dssp GCGGGEEEEEEEEECCCSCSSSCCCEEEEEEEEEEEECC------------------------CEEEEEEEEESSCCSSE
T ss_pred ccccCceeEEEEEeccCCCCCCCCceEEEEEEEEEEeccCCCcccccCcccccccccCccCCCceEEEEEEecCCCCccc
Confidence 112222322211 122222221111100 0011223344444444433222
Q ss_pred ccccccccccCCCCcchhhhccchhhhhhcchhhhhHhhhhcccCCCCCCccccchhhHHHHHHHhhhhhhHHHhhhhcc
Q 019110 140 RNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYS 219 (346)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (346)
+...
T Consensus 242 e~~~---------------------------------------------------------------------------- 245 (361)
T 4f3l_A 242 EMCT---------------------------------------------------------------------------- 245 (361)
T ss_dssp EECS----------------------------------------------------------------------------
T ss_pred cccc----------------------------------------------------------------------------
Confidence 0000
Q ss_pred cccCeEEeeeEecCCCccchhHHHHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcch
Q 019110 220 QLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299 (346)
Q Consensus 220 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~ 299 (346)
+-......++..+. ||+++|+|++++.++||+++|++|+++..++||+|.+
T Consensus 246 --------------------------i~~~~~~f~~~~~~---dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~ 296 (361)
T 4f3l_A 246 --------------------------VEEPNEEFTSRHSL---EWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLE 296 (361)
T ss_dssp --------------------------CSSSCCEEEEEECT---TSBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHH
T ss_pred --------------------------ccCCcceeEEEEcC---CceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHH
Confidence 00011245667777 9999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCceEEEEEeEecCCCeEEEEEEeeeeecC-CCcc
Q 019110 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNA-SGKV 345 (346)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~-~G~v 345 (346)
.....+.+.+..|.....++|+++|||+++|++.++.|++|+ +|++
T Consensus 297 ~~~~~~~~~l~~g~~~~~eyR~~~kdG~~vWv~~~~~~v~~~~~g~~ 343 (361)
T 4f3l_A 297 NLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSRP 343 (361)
T ss_dssp HHHHHHHHHHHHSEEECCCEEEECTTSEEEEEEEEEEEEECTTTCCE
T ss_pred HHHHHHHHHHhCCCcceEEEEEEecCCCEEEEEEEEEEEEcCCCCCe
Confidence 888888888888888888999999999999999999999998 6764
No 3
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.89 E-value=2.5e-22 Score=173.57 Aligned_cols=92 Identities=16% Similarity=0.047 Sum_probs=82.2
Q ss_pred CCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCc-eEEEEEeEecCCCeE
Q 019110 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA-CTVRILNYRKDKSSF 329 (346)
Q Consensus 251 ~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~dG~~~ 329 (346)
.+.++..|. ||+++|+|++++.++||+++|++|+++..++||+|.+.+...+.+.+..++. ...++|+++|||+++
T Consensus 278 ~~fi~~~~~---dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~v 354 (387)
T 4f3l_B 278 MEYVSRHAI---DGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFI 354 (387)
T ss_dssp CEEEEEECT---TSBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCEE
T ss_pred ceEEEEECC---CCEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCEE
Confidence 456788888 9999999999999999999999999999999999999888888888876554 567999999999999
Q ss_pred EEEEEeeeeecC-CCcc
Q 019110 330 WNLLHISPIRNA-SGKV 345 (346)
Q Consensus 330 ~~~~~~~~i~d~-~G~v 345 (346)
|++.++.+++|+ +|++
T Consensus 355 Wv~~~~~~~~~~~~g~~ 371 (387)
T 4f3l_B 355 TLRSRWFSFMNPWTKEV 371 (387)
T ss_dssp EEEEEEEEEEETTTTEE
T ss_pred EEEEEEEEEECCCCCCE
Confidence 999999999987 6654
No 4
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.89 E-value=7.2e-23 Score=158.41 Aligned_cols=148 Identities=23% Similarity=0.340 Sum_probs=132.2
Q ss_pred hhHHHHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceEE
Q 019110 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (346)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (346)
+..++++.+++++|++++++|.+.+||+|+++|+++++++||++++++|+++..+.++.........+...+..+.++..
T Consensus 4 ~~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (176)
T 4hia_A 4 KQFEKIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQV 83 (176)
T ss_dssp HHHHHHHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceEE
Confidence 34457889999999999999985445999999999999999999999999988888888877778888888888889999
Q ss_pred EEEeeeCCCCeEEEEeeecccccCCCCceeEEEEEeeccccccccccccccccccCCCCcchhhhccch
Q 019110 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSC 163 (346)
Q Consensus 95 e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (346)
+++..+++|..+|+.+++.|+++ .+|.+.+++++++|||++|+++++...+.+|.+|+++|+......
T Consensus 84 e~~~~~~dG~~~~~~~~~~pi~~-~~g~~~~~~~~~~DITe~k~~e~~~~~a~~d~LtgL~NR~~~~~~ 151 (176)
T 4hia_A 84 VLRNYRANDEPFDNLLFLHPVGG-RPDAPDYFLGSQFELGRSGNSEEAAAAGHAGALTGELARIGTVAA 151 (176)
T ss_dssp EEEEECTTCCEEEEEEEEEEESS-BTTBCSEEEEEEEEESSSGGGHHHHHHHHHHHHHHHHHHTTSSCG
T ss_pred EEEEEcCCCCEEEEEEEEEEeeC-CCCCeEEEEEEEEECcHhhHHHHHHHHhhhhHHhhhhhhhhhHHH
Confidence 99999999999999999999999 899999999999999999999888677789999999998765443
No 5
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=99.89 E-value=4.1e-22 Score=167.60 Aligned_cols=201 Identities=12% Similarity=0.124 Sum_probs=145.2
Q ss_pred EEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCce------------EEEEEe
Q 019110 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI------------EVNLLN 98 (346)
Q Consensus 31 i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~e~~~ 98 (346)
+++++.. ||+|+|+|+++..++||++++++|+++.++.+|++...+...+ ..+.++ .+-.+.
T Consensus 6 ~~vv~~~--~G~i~yvS~~~~~~LGy~~~el~G~s~~d~ihp~D~~~f~~~L----~~gl~~~~~~~~~~~~~rsffcR~ 79 (339)
T 3rty_A 6 CCVISMH--DGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQI----TTGIPIAESRGSVPKDAKSTFCVM 79 (339)
T ss_dssp EEEEETT--TCBEEEECTTHHHHHCCCTTSSTTSBGGGGBCHHHHHHHHHHH----HTTSCCC----------CCEEEEE
T ss_pred EEEEECC--CcEEEEEChHHHHHcCCCHHHHCCCcHHHhcCHHHHHHHHHHH----hcCCCCCccccCCCCCCceEEEEE
Confidence 3556622 4999999999999999999999999999999988766654443 333211 222332
Q ss_pred eeC----------------CCCeEEEEeeecccccCC---------CCceeEEEEEeeccccccccccccccccccCCCC
Q 019110 99 YKK----------------DGTPFWMLFKMSLVFGKE---------DGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGS 153 (346)
Q Consensus 99 ~~~----------------dg~~~~~~~~~~~~~~~~---------~g~~~~~~~~~~DIT~~k~~~~~~~~~~~~~~~~ 153 (346)
.++ ++..+|+..+..++.+ + .|...+++.++.+++.......+...
T Consensus 80 ~rr~~~l~s~gy~v~~~~~~~~p~~l~~~~~~~~~-e~~~~~~~~~~g~~~~lv~~a~~i~s~~~~p~e~~~-------- 150 (339)
T 3rty_A 80 LRRYRGLKSGGFGVIGRPVSYEPFRLGLTFREAPE-EARPDNYMVSNGTNMLLVICATPIKSSYKVPDEILS-------- 150 (339)
T ss_dssp EECCC-------------CCEEEEEEEEEEEECCC-C----------CCCEEEEEEEEECCCSCSSTTBBCC--------
T ss_pred EeccCCCCcCCcceecccccceeEEEEEEEecccc-ccccccccccCCceEEEEEEcccCCccccccchhhc--------
Confidence 111 1112333344445544 3 45666778888888765443000000
Q ss_pred cchhhhccchhhhhhcchhhhhHhhhhcccCCCCCCccccchhhHHHHHHHhhhhhhHHHhhhhcccccCeEEeeeEecC
Q 019110 154 RLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSL 233 (346)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (346)
T Consensus 151 -------------------------------------------------------------------------------- 150 (339)
T 3rty_A 151 -------------------------------------------------------------------------------- 150 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccchhHHHHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCC
Q 019110 234 PGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313 (346)
Q Consensus 234 ~~l~~~~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~ 313 (346)
....+.++..+. ||+++|+|+++..++||+++|++|+++..++||+|.......+...+..|.
T Consensus 151 --------------~~~~~fi~r~~~---dG~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~G~ 213 (339)
T 3rty_A 151 --------------QKSPKFAIRHTA---TGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQ 213 (339)
T ss_dssp --------------SSCCEEEEEEET---TCBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHTT
T ss_pred --------------cCCceEEEEECC---CCeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHcCC
Confidence 011346777888 999999999999999999999999999999999999988888888887666
Q ss_pred c-----eEEEEEeEecCCCeEEEEEEeeeeecCCC
Q 019110 314 A-----CTVRILNYRKDKSSFWNLLHISPIRNASG 343 (346)
Q Consensus 314 ~-----~~~e~~~~~~dG~~~~~~~~~~~i~d~~G 343 (346)
. ...++|++++||+++|++.++++++|+.+
T Consensus 214 ~~~~~~~s~~yR~~~kdG~~vWlet~~~~~~np~s 248 (339)
T 3rty_A 214 TAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWS 248 (339)
T ss_dssp STTCCCBCCCEEEECTTSCEEEEEEEEEEEECTTT
T ss_pred cccccccceEEEEEccCCCEEEEEEEEEEEECCCC
Confidence 4 35789999999999999999999999765
No 6
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.87 E-value=5e-21 Score=138.20 Aligned_cols=118 Identities=19% Similarity=0.374 Sum_probs=106.1
Q ss_pred hHHHHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceEEE
Q 019110 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (346)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (346)
+.++++.++++++++++++|.+ |+|+++|++|++++||++++++|++...+.++.........+...+..+..+..+
T Consensus 3 ~~~~~~~~~~~~~~~i~~~d~~---g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 79 (120)
T 2gj3_A 3 LPEIFRQTVEHAPIAISITDLK---ANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWSGV 79 (120)
T ss_dssp CHHHHHHHHHHCSSEEEEECTT---CBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHHHHHhCCCeEEEECCC---CCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCCEEEE
Confidence 3467889999999999999997 9999999999999999999999999887777666655566777778888888889
Q ss_pred EEeeeCCCCeEEEEeeecccccCCCCceeEEEEEeecccccc
Q 019110 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (346)
Q Consensus 96 ~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~k 137 (346)
+..+++||..+|+.+++.|+++ .+|.+.+++++++|||++|
T Consensus 80 ~~~~~~dG~~~~~~~~~~pi~~-~~g~~~~~v~~~~DITe~k 120 (120)
T 2gj3_A 80 LVNRRKDKTLYLAELTVAPVLN-EAGETIYYLGMHRDTSELH 120 (120)
T ss_dssp EEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECCSCC
T ss_pred EEEEcCCCCEEEEEEEEEEEEC-CCCCEEEEEEEeccCcccC
Confidence 9999999999999999999999 8999999999999999986
No 7
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.84 E-value=3e-20 Score=134.23 Aligned_cols=116 Identities=9% Similarity=0.137 Sum_probs=100.4
Q ss_pred HHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHh-cCCceEEEEE
Q 019110 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR-EERPIEVNLL 97 (346)
Q Consensus 19 ~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~ 97 (346)
+...+++++++.+++.|.+ |+++++|+++++++||++++++|+++..+++|++.......+.+.+. .+..+..+++
T Consensus 3 ~~~ll~e~~~d~i~~~d~~---g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r 79 (121)
T 3f1p_B 3 FKGLNVCQPTRFISRHNIE---GIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFR 79 (121)
T ss_dssp -----CCCCCEEEEEECTT---SBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEEEEE
T ss_pred cccceecCCCceEEEECCC---ceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccEEEE
Confidence 3456899999999999996 99999999999999999999999999899999988887777877775 4557889999
Q ss_pred eeeCCCCeEEEEeeecccccCC-CCceeEEEEEeeccccccc
Q 019110 98 NYKKDGTPFWMLFKMSLVFGKE-DGRATHFVAVQVPIVSRKH 138 (346)
Q Consensus 98 ~~~~dg~~~~~~~~~~~~~~~~-~g~~~~~~~~~~DIT~~k~ 138 (346)
++++||..+|+..+..|+++ + +|.+.+++++.+|||++|+
T Consensus 80 ~~~~dG~~~w~~~~~~~~~~-~~~g~~~~iv~~~~DIT~~kq 120 (121)
T 3f1p_B 80 FRSKNQEWLWMRTSSFTFQN-PYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp EECTTSCEEEEEEEEEEECC-TTCCCCCEEEEEEEECCCC--
T ss_pred EEecCCCEEEEEEEEEEEEC-CCCCceeEEEEEeEEcccccC
Confidence 99999999999999999998 6 7899999999999999986
No 8
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.83 E-value=1.6e-19 Score=127.85 Aligned_cols=109 Identities=40% Similarity=0.795 Sum_probs=97.5
Q ss_pred hCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceEEEEEeeeCCCCe
Q 019110 26 ELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTP 105 (346)
Q Consensus 26 ~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~ 105 (346)
+++++++++|.+.++|+|+++|++|++++||+.++++|+++..+.++.........+.+.+..+.++..+++.+++||+.
T Consensus 1 ~~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~ 80 (109)
T 1n9l_A 1 GLRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTP 80 (109)
T ss_dssp CCSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCE
T ss_pred CCccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHHHHHHHcCCcEEEEEEEEcCCCCE
Confidence 36789999996544699999999999999999999999997777777666666778888888898999999999999999
Q ss_pred EEEEeeecccccCCCCceeEEEEEeecccc
Q 019110 106 FWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~ 135 (346)
+|+.+++.|+++ ++|.+.+++++.+|||+
T Consensus 81 ~~~~~~~~pi~d-~~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 81 FWNLLTVTPIKT-PDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp EEEEEEEEEEEC-TTSCEEEEEEEEEECCC
T ss_pred EEEEEEEEEEEC-CCCCEEEEEEEEEeCCC
Confidence 999999999999 99999999999999996
No 9
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=99.82 E-value=1.7e-18 Score=144.14 Aligned_cols=89 Identities=8% Similarity=-0.010 Sum_probs=78.7
Q ss_pred CcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCc---eEEEEEeEecCCCe
Q 019110 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA---CTVRILNYRKDKSS 328 (346)
Q Consensus 252 ~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~e~~~~~~dG~~ 328 (346)
..+...+. ||+++|+|+++..++||+++|++|+++.+++||+|.......+.+.+..++. ...++|+++|||++
T Consensus 175 ~Fitrh~~---dG~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~ 251 (317)
T 4dj3_A 175 IFTTTHTP---GCVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEY 251 (317)
T ss_dssp EEEEEECT---TSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCE
T ss_pred ceEEEecC---CCeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEccCCCE
Confidence 35666677 9999999999999999999999999999999999999888888888877664 35789999999999
Q ss_pred EEEEEEeeeeecCCC
Q 019110 329 FWNLLHISPIRNASG 343 (346)
Q Consensus 329 ~~~~~~~~~i~d~~G 343 (346)
+|++.+.++++|+.+
T Consensus 252 vwvet~~~~~~np~s 266 (317)
T 4dj3_A 252 VILDSSWSSFVNPWS 266 (317)
T ss_dssp EEEEEEEEEEECSSS
T ss_pred EEEEEEEEEEECCCC
Confidence 999999999998643
No 10
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.82 E-value=6.8e-20 Score=136.39 Aligned_cols=125 Identities=14% Similarity=0.205 Sum_probs=109.2
Q ss_pred hhHHHHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCC--CCCcccCCCCChhhHHHHHHHHhcCCce
Q 019110 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGR--NGRMFQGPRTNRRTIMEIREAIREERPI 92 (346)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (346)
+++++|+.+++.++.++|.+|.. +.++++|+++++++||+++++.+. .+..+++|++...+...+..++..+.++
T Consensus 6 ~se~rl~~~~~~~~~g~w~~d~~---~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~ 82 (142)
T 3mr0_A 6 ASEERFQLAVSGASAGLWDWNPK---TGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTY 82 (142)
T ss_dssp ---CCHHHHHHHTTCEEEEECTT---TCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHCCCE
T ss_pred HHHHHHHHHHHhCCcEEEEEEcC---CCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCce
Confidence 56678899999999999999997 889999999999999999998763 3566788998888888888888888889
Q ss_pred EEEEEeeeCCCCeEEEEeeecccccCCCCceeEEEEEeecccccccccccc
Q 019110 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (346)
Q Consensus 93 ~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~k~~~~~~ 143 (346)
..++++.++||..+|+.....|+++ .+|.+.+++|+++|||++|++|+.+
T Consensus 83 ~~e~r~~~~~G~~~w~~~~~~~~~d-~~g~~~~~~G~~~DITerk~~E~~L 132 (142)
T 3mr0_A 83 DVEYRVRTRSGDFRWIQSRGQALWN-SAGEPYRMVGWIMDVTDRKRDEDAL 132 (142)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHHHHHHH
T ss_pred EEEEEEECCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEcCchHHHHHHHH
Confidence 9999999999999999999999999 9999999999999999999995444
No 11
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.81 E-value=1.6e-19 Score=148.50 Aligned_cols=124 Identities=29% Similarity=0.581 Sum_probs=107.4
Q ss_pred hhHHHHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceEE
Q 019110 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (346)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (346)
+.+++|+.+++++|++++++|....||+|+++|++|++++||++++++|+++..+.++.+.......+...+..+.++..
T Consensus 60 ~~~~~~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 139 (258)
T 3p7n_A 60 PPAQWVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKPVLV 139 (258)
T ss_dssp -CCHHHHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEE
T ss_pred hHHHHHHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHHHHcCCCeEE
Confidence 56778999999999999999992112889999999999999999999999988888888888888888888888989999
Q ss_pred EEEeeeCCCCeEEEEeeecccccCCCCceeEEEEEeecccccccc
Q 019110 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (346)
Q Consensus 95 e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~k~~ 139 (346)
+++..++||..+|+.+++.|+++ .+|.+.+++++++|||++|..
T Consensus 140 e~~~~~~dG~~~~~~~~~~pi~d-~~g~~~~~v~~~~DITerk~~ 183 (258)
T 3p7n_A 140 EILNYKKDGTPFRNAVLVAPIYD-DDDELLYFLGSQVEVDDDQPN 183 (258)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEC-TTSCSEEEEEEEEEC------
T ss_pred EEEEEcCCCCEEEEeeEEEEEEc-CCCCEEEEEEEeeecchhhhh
Confidence 99999999999999999999999 899999999999999999544
No 12
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=99.81 E-value=5.5e-19 Score=147.23 Aligned_cols=88 Identities=11% Similarity=0.005 Sum_probs=77.2
Q ss_pred CcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcC-Cce-EEEEEeEecCCCeE
Q 019110 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE-QAC-TVRILNYRKDKSSF 329 (346)
Q Consensus 252 ~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~-~~e~~~~~~dG~~~ 329 (346)
..+...+. ||+++|+|+++..++||+++|++|+++.+++||+|.......+.+.+..+ ... ..++|+++|||+++
T Consensus 177 ~Fitrh~~---dG~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~v 253 (320)
T 4dj2_A 177 IFTTRHTP---SCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYV 253 (320)
T ss_dssp EEEEEECT---TCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEECSSSCEE
T ss_pred eEEEEecC---CceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEEccCCCEE
Confidence 35666777 99999999999999999999999999999999999998888888888754 445 46999999999999
Q ss_pred EEEEEeeeeecCC
Q 019110 330 WNLLHISPIRNAS 342 (346)
Q Consensus 330 ~~~~~~~~i~d~~ 342 (346)
|++.+.+++.|+.
T Consensus 254 wvet~~~~~~np~ 266 (320)
T 4dj2_A 254 TMDTSWAGFVHPW 266 (320)
T ss_dssp EEECEEEEEECTT
T ss_pred EEEEEEEEEECCC
Confidence 9999999998863
No 13
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.81 E-value=1.5e-19 Score=132.75 Aligned_cols=119 Identities=36% Similarity=0.654 Sum_probs=99.9
Q ss_pred HHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceEEEEEeeeC
Q 019110 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKK 101 (346)
Q Consensus 22 ~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 101 (346)
.++++++++++++|.++++++|+++|++|++++||++++++|+++..+.++.........+...+..+..+..+++.+++
T Consensus 3 ~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k 82 (132)
T 2pr5_A 3 HMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKK 82 (132)
T ss_dssp ---CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECT
T ss_pred hHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEEEEec
Confidence 57899999999999862235999999999999999999999998877776666666666777778888888889999999
Q ss_pred CCCeEEEEeeecccccCCCCceeEEEEEeecccccccccccc
Q 019110 102 DGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (346)
Q Consensus 102 dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~k~~~~~~ 143 (346)
||+.+|+.+++.|+.+ .+ +.+++++++|||++|++++++
T Consensus 83 dG~~~~~~~~~~~~~~-~~--~~~~~~~~~DITe~k~~e~~l 121 (132)
T 2pr5_A 83 DGTMFWNELNIDPMEI-ED--KTYFVGIQNDITKQKEYEKLL 121 (132)
T ss_dssp TSCEEEEEEEEEEEEE-TT--EEEEEEEEEECHHHHHHHHHH
T ss_pred CCCeeeeEEEEEeccC-CC--eeEEEEEEEeCcHHHHHHHHH
Confidence 9999999999999988 44 788999999999999994444
No 14
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=99.81 E-value=2e-18 Score=143.31 Aligned_cols=87 Identities=11% Similarity=-0.010 Sum_probs=76.9
Q ss_pred cEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCc-eE-EEEEeEecCCCeEE
Q 019110 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA-CT-VRILNYRKDKSSFW 330 (346)
Q Consensus 253 ~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~e~~~~~~dG~~~~ 330 (346)
.+...+. ||+++|+|+++..++||+++|++|+++.+++||+|.......+.+.+..++. .. .++|+++|||+++|
T Consensus 167 Fitrh~~---dG~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vw 243 (309)
T 3gdi_A 167 FTTTHTP---NCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYIT 243 (309)
T ss_dssp EEEEECT---TCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECTTSCEEE
T ss_pred EEEEecC---CCeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEEccCCCEEE
Confidence 5666677 9999999999999999999999999999999999998888888888876554 55 59999999999999
Q ss_pred EEEEeeeeecCC
Q 019110 331 NLLHISPIRNAS 342 (346)
Q Consensus 331 ~~~~~~~i~d~~ 342 (346)
++.+.+++.|+.
T Consensus 244 vet~~~~~~np~ 255 (309)
T 3gdi_A 244 LDTSWSSFINPW 255 (309)
T ss_dssp EEEEEEEEECTT
T ss_pred EEEEEEEEECCC
Confidence 999999998863
No 15
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.80 E-value=3.6e-19 Score=135.86 Aligned_cols=124 Identities=39% Similarity=0.648 Sum_probs=111.8
Q ss_pred hhHHHHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceEE
Q 019110 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (346)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (346)
....+++.+++++|++++++|...+||+|+++|+++++++||++++++|+++..+.++.........+...+..+..+..
T Consensus 32 ~~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (166)
T 3ue6_A 32 DPDYSLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNAITKGVDTSV 111 (166)
T ss_dssp CCCCHHHHHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHhcCCceEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHHHhcCCceEE
Confidence 45678899999999999999982223999999999999999999999999988888887777777788888888888899
Q ss_pred EEEeeeCCCCeEEEEeeecccccCCCCceeEEEEEeecccccccc
Q 019110 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (346)
Q Consensus 95 e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~k~~ 139 (346)
++...+++|..+|+.++..|+.+ .+|.+.+++++++|||++|.+
T Consensus 112 e~~~~~~~g~~~~~~~~~~~i~~-~~g~~~~~~~~~~DITe~k~~ 155 (166)
T 3ue6_A 112 CLLNYRQDGTTFWNLFFVAGLRD-SKGNIVNYVGVQSKVSEDYAK 155 (166)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEECCBCCHHHHH
T ss_pred EEEEEcCCCCEEEEEEEEEeeeC-CCCCEEEEEEEEEechHHHHH
Confidence 99999999999999999999999 899999999999999999987
No 16
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.80 E-value=9e-19 Score=126.23 Aligned_cols=103 Identities=23% Similarity=0.383 Sum_probs=93.4
Q ss_pred hHHHHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCceEEEE
Q 019110 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRI 319 (346)
Q Consensus 240 ~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 319 (346)
...+..++++++++|+++|. +|+|+|+|++|++++||+++|++|+++..+.++.........+...+..+..+..++
T Consensus 4 ~~~~~~~~~~~~~~i~~~d~---~g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 80 (120)
T 2gj3_A 4 PEIFRQTVEHAPIAISITDL---KANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWSGVL 80 (120)
T ss_dssp HHHHHHHHHHCSSEEEEECT---TCBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHhCCCeEEEECC---CCCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCCEEEEE
Confidence 45688899999999999999 999999999999999999999999998888777776666677778888888999999
Q ss_pred EeEecCCCeEEEEEEeeeeecCCCcc
Q 019110 320 LNYRKDKSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 320 ~~~~~dG~~~~~~~~~~~i~d~~G~v 345 (346)
+.+++||+.+|+.++++|++|.+|++
T Consensus 81 ~~~~~dG~~~~~~~~~~pi~~~~g~~ 106 (120)
T 2gj3_A 81 VNRRKDKTLYLAELTVAPVLNEAGET 106 (120)
T ss_dssp EEECTTSCEEEEEEEEEEEECTTSCE
T ss_pred EEEcCCCCEEEEEEEEEEEECCCCCE
Confidence 99999999999999999999999875
No 17
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.80 E-value=2.1e-19 Score=128.93 Aligned_cols=109 Identities=8% Similarity=0.162 Sum_probs=98.5
Q ss_pred CCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceEEEEEeeeCCCCeE
Q 019110 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (346)
Q Consensus 27 ~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~ 106 (346)
+++.+++.|.+ |+++++|+++++++||++++++|+++..+++|++.......+...+..+..+..+++++++||..+
T Consensus 8 ~~~~i~~~d~~---g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~ 84 (117)
T 3f1p_A 8 SKTFLSEHSMD---MKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYV 84 (117)
T ss_dssp GGEEEEEECTT---CBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSSEE
T ss_pred CccEEEEECCC---ceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCCCEE
Confidence 45678888986 999999999999999999999999998999998888888888888888877778999999999999
Q ss_pred EEEeeecccccCC-CCceeEEEEEeecccccccc
Q 019110 107 WMLFKMSLVFGKE-DGRATHFVAVQVPIVSRKHM 139 (346)
Q Consensus 107 ~~~~~~~~~~~~~-~g~~~~~~~~~~DIT~~k~~ 139 (346)
|+.++..|+++ + +|.+.+++++.+|||++|++
T Consensus 85 w~~~~~~~~~d-~~~g~~~~iv~~~~DITer~~~ 117 (117)
T 3f1p_A 85 WLETQGTVIYN-PRNLQPQCIMCVNYVLSEIEKN 117 (117)
T ss_dssp EEEEEEEEEEE-TTTTEEEEEEEEEEECSCCBC-
T ss_pred EEEEeeEEEEC-CCCCCceEEEEEeeeccccccC
Confidence 99999999998 6 78999999999999999864
No 18
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.79 E-value=1e-18 Score=123.66 Aligned_cols=96 Identities=49% Similarity=1.023 Sum_probs=86.8
Q ss_pred cCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCceEEEEEeEecCCCeE
Q 019110 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSF 329 (346)
Q Consensus 250 ~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~ 329 (346)
++++|+++|...++|+|+|+|++|++++||+++|++|+++..+.++.........+.+.+..++++..+++.++|||+.+
T Consensus 2 ~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~ 81 (109)
T 1n9l_A 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPF 81 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEE
T ss_pred CccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHHHHHHHcCCcEEEEEEEEcCCCCEE
Confidence 57899999964337999999999999999999999999988887777777777888888999999999999999999999
Q ss_pred EEEEEeeeeecCCCcc
Q 019110 330 WNLLHISPIRNASGKV 345 (346)
Q Consensus 330 ~~~~~~~~i~d~~G~v 345 (346)
|++++++|++|++|++
T Consensus 82 ~~~~~~~pi~d~~G~~ 97 (109)
T 1n9l_A 82 WNLLTVTPIKTPDGRV 97 (109)
T ss_dssp EEEEEEEEEECTTSCE
T ss_pred EEEEEEEEEECCCCCE
Confidence 9999999999999976
No 19
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.78 E-value=1.4e-18 Score=126.51 Aligned_cols=120 Identities=37% Similarity=0.655 Sum_probs=103.9
Q ss_pred HHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceEEEEEeeeCC
Q 019110 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKD 102 (346)
Q Consensus 23 ~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~d 102 (346)
+++++|++++++|...++|+|+++|+++++++||+.++++|+++..+.++.........+...+..+..+..+++..+++
T Consensus 2 ~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 81 (128)
T 3t50_A 2 ASEFTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINYKKS 81 (128)
T ss_dssp CCCCCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTT
T ss_pred ccccCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCceeEEEEEcCC
Confidence 57899999999998211289999999999999999999999998888877777777778888888888888999999999
Q ss_pred CCeEEEEeeecccccCCCCceeEEEEEeecccccccccccc
Q 019110 103 GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (346)
Q Consensus 103 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~k~~~~~~ 143 (346)
|..+|+.++..|+.+ .+|.+.+++++++|||++|+++++.
T Consensus 82 g~~~~~~~~~~~i~~-~~g~~~~~~~~~~DITe~k~~e~~~ 121 (128)
T 3t50_A 82 GEAFWNRLHISPVHN-ANGRLQHFVSSQLDVTLELVPRGSL 121 (128)
T ss_dssp CCEEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHC-----
T ss_pred CCEEEEEEEEEEEEC-CCCCEEEEEEEEEEcchhhhhhhhh
Confidence 999999999999999 8999999999999999999995554
No 20
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.78 E-value=1.1e-18 Score=126.13 Aligned_cols=120 Identities=14% Similarity=0.090 Sum_probs=94.5
Q ss_pred hhHHHHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcC--CCCCcccCCCCChhhHHHHHHHHhcCCce
Q 019110 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIG--RNGRMFQGPRTNRRTIMEIREAIREERPI 92 (346)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (346)
+++++++.+++.++.++|++|.+ +.++++|+++++++||++++++| ..+..+.+|++.......+...+..+.++
T Consensus 4 ~~~~~l~~~~~~~~~~i~~~d~~---~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 80 (125)
T 3nja_A 4 MAEKLLHTAESDAGIGSWVLHME---SGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPF 80 (125)
T ss_dssp -------------CCEEEEEETT---TTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCCCE
T ss_pred HHHHHHHHHHHhCCeeEEEEEcC---CCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCCCc
Confidence 45678889999999999999997 99999999999999999999988 44556677887777777888888888888
Q ss_pred EEEEEeeeCCCCeEEEEeeecccccCCCCceeEEEEEeeccccccc
Q 019110 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (346)
Q Consensus 93 ~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~k~ 138 (346)
..++++.+++|..+|+.++..|+.+ .+|.+.+++++++|||++|+
T Consensus 81 ~~e~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~g~~~DITe~k~ 125 (125)
T 3nja_A 81 DVEYRIVRPDGQVRELLERNHIQRQ-ASGQVDHLWGTVIDMTEHKQ 125 (125)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECCC---
T ss_pred eEEEEEECCCCCEEEEEEeeEEEEC-CCCCEEEEEEEEEecccccC
Confidence 9999999999999999999999999 89999999999999999985
No 21
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.77 E-value=7.8e-18 Score=119.75 Aligned_cols=114 Identities=40% Similarity=0.765 Sum_probs=99.8
Q ss_pred HHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceEEEEEeeeCC
Q 019110 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKD 102 (346)
Q Consensus 23 ~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~d 102 (346)
.++++|++++++|...++|+++++|+++++++||++++++|+++..+.++.........+...+..+..+..+.+..+++
T Consensus 2 ~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (115)
T 4eet_B 2 SPEFIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETTVQLINYTKS 81 (115)
T ss_dssp ---CCCCSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTT
T ss_pred ccccCCCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcceEEEEecCC
Confidence 57899999999999111299999999999999999999999998888877777777778888888888888899999999
Q ss_pred CCeEEEEeeecccccCCCCceeEEEEEeecccccc
Q 019110 103 GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (346)
Q Consensus 103 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~k 137 (346)
|..+|+.++..|+.+ .+|.+.+++++++|||+++
T Consensus 82 g~~~~~~~~~~~~~~-~~g~~~~~~~~~~DITer~ 115 (115)
T 4eet_B 82 GKKFWNLLHLQPVRD-QKGELQYFIGVQLDGSDHV 115 (115)
T ss_dssp CCEEEEEEEEEEEEC-TTSCEEEEEEEEEECSCCC
T ss_pred CCEEEEEEEEEEEEC-CCCCEEEEEEEEEeecccC
Confidence 999999999999999 8999999999999999974
No 22
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.77 E-value=1.7e-18 Score=124.69 Aligned_cols=115 Identities=12% Similarity=0.118 Sum_probs=91.9
Q ss_pred HHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCC-hhhHHHHHHHHhcCCceEEEEE
Q 019110 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTN-RRTIMEIREAIREERPIEVNLL 97 (346)
Q Consensus 19 ~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~ 97 (346)
.|+.+++++|.++++ +.+ |+|+++|+++++++||++++++|+++..+.++... ......+...+..+..+..+++
T Consensus 4 ~~~~~~~~~~~~i~~-~~~---g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 79 (120)
T 3mqq_A 4 DYKTAFHLAPIGLVL-SRD---RVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRI 79 (120)
T ss_dssp CHHHHHHHCSSEEEE-EET---TEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred hHHHHHhcCCceEEE-ecC---CEEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcceEEEE
Confidence 377899999999965 665 99999999999999999999999997776654322 3344455566667778888999
Q ss_pred eeeCCCCeEEEEeeecccccCCCCceeEEEEEeecccccccc
Q 019110 98 NYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (346)
Q Consensus 98 ~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~k~~ 139 (346)
+.++||..+|+.++..|+ + .+|...+++++++|||++|++
T Consensus 80 ~~~~dG~~~~~~~~~~~~-~-~~~~~~~~v~~~~DITerk~~ 119 (120)
T 3mqq_A 80 MKRAGGELFWCHVTGRAL-D-RTAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp EECTTSCEEEEEEEEEES-S-TTSTTSSEEEEEEESCC----
T ss_pred EEeCCCCEEEEEEEEEEC-C-CCCCceeEEEEEEcccHhhcc
Confidence 999999999999999999 4 466677899999999999986
No 23
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.76 E-value=4.7e-18 Score=122.58 Aligned_cols=99 Identities=11% Similarity=0.160 Sum_probs=88.4
Q ss_pred HHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHh-cCCceEEEEEeE
Q 019110 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ-TEQACTVRILNY 322 (346)
Q Consensus 244 ~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~ 322 (346)
..+++++++.|++.|. +|+++|+|+++++++||+++|++|+++..++||++.......+...+. .+..+..|++++
T Consensus 5 ~ll~e~~~d~i~~~d~---~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~ 81 (121)
T 3f1p_B 5 GLNVCQPTRFISRHNI---EGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFR 81 (121)
T ss_dssp ---CCCCCEEEEEECT---TSBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEEEEEEE
T ss_pred cceecCCCceEEEECC---CceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccEEEEEE
Confidence 3568899999999999 999999999999999999999999999999999999988888888875 455789999999
Q ss_pred ecCCCeEEEEEEeeeeecC-CCcc
Q 019110 323 RKDKSSFWNLLHISPIRNA-SGKV 345 (346)
Q Consensus 323 ~~dG~~~~~~~~~~~i~d~-~G~v 345 (346)
++||+.+|+++++.|++|+ +|++
T Consensus 82 ~~dG~~~w~~~~~~~~~~~~~g~~ 105 (121)
T 3f1p_B 82 SKNQEWLWMRTSSFTFQNPYSDEI 105 (121)
T ss_dssp CTTSCEEEEEEEEEEECCTTCCCC
T ss_pred ecCCCEEEEEEEEEEEECCCCCce
Confidence 9999999999999999987 6654
No 24
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.76 E-value=6.5e-18 Score=123.51 Aligned_cols=124 Identities=17% Similarity=0.238 Sum_probs=97.5
Q ss_pred chhhhHHHHHhhhHHHHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHH
Q 019110 4 QLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83 (346)
Q Consensus 4 ~~~~~e~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~ 83 (346)
++.++|++++ +++.+++.+++++|++++++|.+ |+|+++|+++++++||++++++|+++..+.++.........+.
T Consensus 3 ~~~~~e~~l~-~~~~~~~~l~~~~~d~i~~~d~~---g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~ 78 (130)
T 1d06_A 3 HMLETEDVVR-ARDAHLRSILDTVPDATVVSATD---GTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQ 78 (130)
T ss_dssp HHHHHHHHHH-HHTSCHHHHHTTCSSEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHHHHHHHHHhhCcCeEEEECCC---CeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHH
Confidence 4567777776 67778999999999999999997 9999999999999999999999999887776654433333343
Q ss_pred HHHhcCCc----eEEEEEeeeCCCCeEEEEeeecccccCCCCceeEEEEEeeccc
Q 019110 84 EAIREERP----IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (346)
Q Consensus 84 ~~~~~~~~----~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (346)
.....+.. ...++...++||+.+|+.+++.|+.+ . + ..+++++++|||
T Consensus 79 ~~~~~~~~~~~~~~~e~~~~~kdG~~~~~~~~~~~~~~-~-~-~~~~~~~~~DIT 130 (130)
T 1d06_A 79 RYMATGEKRIIGIDRVVSGQRKDGSTFPMKLAVGEMRS-G-G-ERFFTGFIRDLT 130 (130)
T ss_dssp HHHHHCCCSSTTSCEEEEEECTTSCEEEEEEEEEEEEE-T-T-EEEEEEEEEECC
T ss_pred HHHhcCCccccCCeeEEEEEeCCCCEEEEEEEEEEEEE-C-C-eEEEEEEEEECc
Confidence 43333322 23467778999999999999999976 3 3 346889999998
No 25
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.76 E-value=1.8e-17 Score=119.00 Aligned_cols=121 Identities=20% Similarity=0.253 Sum_probs=105.5
Q ss_pred hhHHHHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceEE
Q 019110 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (346)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (346)
...++++.+++++|.+++++|.+ |+++++|+++++++|++.++++|+++..+.++.........+...+..+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~i~~~d~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (124)
T 3lyx_A 4 DILKQRAKAFDYVFDAIVVTDLQ---GFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWTG 80 (124)
T ss_dssp CHHHHHHHGGGTCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEEE
T ss_pred hHHHHHHHHHhhcCceEEEECCC---CcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCcccc
Confidence 34567889999999999999996 999999999999999999999999877666666655566677788888888888
Q ss_pred EEEeeeCCCCeEEEEeeecccccCCCCceeEEEEEeecccccccc
Q 019110 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (346)
Q Consensus 95 e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~k~~ 139 (346)
+.....++|..+|+.++..|+.+ .+|.+.+++++++|||++|+.
T Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~~~l 124 (124)
T 3lyx_A 81 EIRMLHKDGHIGWIESMCVPIYG-ENYQMVGALGINRDITKRKKE 124 (124)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEC-STTCEEEEEEEEEECSCC---
T ss_pred eEEEEccCCCEEEEEEEEEEEEC-CCCCEEEEEEEEecchhhhcC
Confidence 99999999999999999999999 899999999999999999863
No 26
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=99.76 E-value=2.8e-18 Score=122.58 Aligned_cols=111 Identities=9% Similarity=0.058 Sum_probs=97.1
Q ss_pred CCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCC-CCcccCCCCChhhHHHHHHHHhcCCceEEEEEeeeCCCCe
Q 019110 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN-GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTP 105 (346)
Q Consensus 27 ~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~ 105 (346)
+++++|.+|.. +++++|+|+++++++||+++++.|.. +..+++|++.......+...+..+.++..+++++++||..
T Consensus 2 a~~giw~~d~~--~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~ 79 (115)
T 3h9w_A 2 TKAIPWKINWQ--TMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRALHRDGHY 79 (115)
T ss_dssp -CCEEEEEETT--TTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSCE
T ss_pred cceEEEEEEcC--CCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEEcCCCCE
Confidence 57899999964 48999999999999999999998832 3457788887788888888888888899999999999999
Q ss_pred EEEEeeecccccCCCCceeEEEEEeeccccccccc
Q 019110 106 FWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~k~~~ 140 (346)
+|+..++.|+++ ++|.+.+++|+..|||++|.+|
T Consensus 80 ~w~~~~~~~~~d-~~G~~~~~~G~~~Dit~~k~~~ 113 (115)
T 3h9w_A 80 VWIRDVVHVVRD-DSGEVEALIGFMFDISLEHHHH 113 (115)
T ss_dssp EEEEEEEEEEEC-TTSCEEEEEEEEEECGGGGC--
T ss_pred EEEEEEEEEEEC-CCCCEEEEEEEEeccCcccccc
Confidence 999999999999 9999999999999999999983
No 27
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.74 E-value=6.5e-17 Score=115.86 Aligned_cols=110 Identities=10% Similarity=0.123 Sum_probs=87.6
Q ss_pred hhHHHHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceEE
Q 019110 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (346)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (346)
+++++|+.++++++++|+++|.+ |+|+++|+++++++||++++++|+++..+.++... .........+..+..+..
T Consensus 8 ~se~~~~~l~e~~~d~i~~~d~~---g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 83 (117)
T 2r78_A 8 FQSNAYRALFEHAIDGIFIMDAE---GHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDS-GWAAASLARIVGGEPLRE 83 (117)
T ss_dssp HHHHHHHHHHHHCSSEEEEECTT---SBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTT-SHHHHHHHHHHTTCCEEE
T ss_pred HhHHHHHHHHhcCCceEEEECCC---CCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccch-hHHHHHHHHHHcCCcEEE
Confidence 56778999999999999999997 99999999999999999999999987665443322 222334445566667788
Q ss_pred EEEeeeCCCCeEEEEeeecccccCCCCceeEEEEEeeccc
Q 019110 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (346)
Q Consensus 95 e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (346)
+.+.+++||+.+|+.++..|+.+ |. ++++++|||
T Consensus 84 e~~~~~kdG~~~~v~~~~~~~~~---g~---~~~i~~DIT 117 (117)
T 2r78_A 84 ERTVWTRNGDQLTVELSAHLLPD---GK---ILGIARDVS 117 (117)
T ss_dssp EEEEECTTSCEEEEEEEEEECTT---SC---EEEEEEC--
T ss_pred EEEEEecCCCEEEEEEEEEEecC---Ce---EEEEEEeCC
Confidence 89999999999999999999854 44 678899998
No 28
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.74 E-value=6.5e-17 Score=117.00 Aligned_cols=122 Identities=38% Similarity=0.732 Sum_probs=104.7
Q ss_pred hhHHHHHHHHhhCCCcEEEec---CCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCc
Q 019110 15 RYTLWVHEALDELPDSFTITD---PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91 (346)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d---~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (346)
+.++.++.++++++++++++| .+ ++++++|+++++++|++.++++|+++..+.++.........+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~i~~~d~~d~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (130)
T 2z6d_A 3 RVSQELKTALSTLQQTFVVSDATQPH---CPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKS 79 (130)
T ss_dssp ----CHHHHHHHTTCEEEEEETTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHhcccceeeeeccCCC---CcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCc
Confidence 345668899999999999999 65 999999999999999999999999988887777777777777788888888
Q ss_pred eEEEEEeeeCCCCeEEEEeeecccccCCCCceeEEEEEeeccccccccc
Q 019110 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140 (346)
Q Consensus 92 ~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~k~~~ 140 (346)
...++...+++|..+|+.++..|+.+ .+|.+.+++++++|||++++++
T Consensus 80 ~~~~~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~~~~e 127 (130)
T 2z6d_A 80 YCGRLLNYKKDGTPFWNLLTVTPIKD-DQGNTIKFIGMQVEVSKYTEGV 127 (130)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECCTTC---
T ss_pred ceeEEEEEcCCCcEEEEEEEEEEEEC-CCCCeeEEEEEEecchHHHHhh
Confidence 88888888999999999999999999 8999999999999999999883
No 29
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.73 E-value=1.8e-17 Score=123.40 Aligned_cols=120 Identities=16% Similarity=0.119 Sum_probs=95.2
Q ss_pred hhHHHHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceEE
Q 019110 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (346)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (346)
+.+..++.+++++++|++++|.+ |+|+++|+++++++|+++++++|+++.++++. ........+.+++..|.+...
T Consensus 19 ~~~~~l~~il~~~~~gi~v~D~~---g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~vl~~G~~~~~ 94 (152)
T 3mxq_A 19 KSRLLLSELLDQLSFALCIVRND---YVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESSSFS 94 (152)
T ss_dssp HHHHHHHHHHHHHCCEEEEEETT---SBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcCC---CEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHHHHhcCCceee
Confidence 55567899999999999999997 99999999999999999999999998888876 555555668888887765332
Q ss_pred EEE------------eeeCCCCeEEEEeeecccccCCCCceeEEEEEeecccccccc
Q 019110 95 NLL------------NYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (346)
Q Consensus 95 e~~------------~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~k~~ 139 (346)
... ...++|...|..+++.|+.+ ++|.+.|++.+++|||+++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d-~~G~v~gv~~ii~DVTe~~~a 150 (152)
T 3mxq_A 95 SWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHS-EDGTIEHVCLCVYDVTIQASQ 150 (152)
T ss_dssp ECCSSSCSSCC----------CCEEEEEEEEEEEC-TTSCEEEEEEEEEEEECC---
T ss_pred ecccccccccccccCCCCCCCcEEEEEEEEEEEEC-CCCCEEEEEEEEEECCHHHhc
Confidence 211 12246778889999999999 999999999999999999876
No 30
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.73 E-value=5.8e-17 Score=115.04 Aligned_cols=113 Identities=15% Similarity=0.181 Sum_probs=92.3
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceEEEE
Q 019110 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNL 96 (346)
Q Consensus 17 ~~~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 96 (346)
+++++.+++++|++++++|.+ |+++++|+++++++|+++++++|+++..++ +.+.......+...+.++.....+.
T Consensus 2 e~~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (114)
T 3luq_A 2 DERLRLFTEHAPAALAMFDRE---MRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVHRRGLAGEVIRVEED 77 (114)
T ss_dssp CHHHHHHHHTCSSEEEEEETT---CBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHHHHHHTTCCEEEEEE
T ss_pred hHHHHHHHhcCCceEEEEcCC---cEEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHHHHHhcCCcceeeee
Confidence 457889999999999999996 999999999999999999999999977776 5555555555555555433333344
Q ss_pred EeeeCCCCeEEEEeeecccccCCCCceeEEEEEeeccc
Q 019110 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (346)
Q Consensus 97 ~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (346)
.+.+++|..+|+.++..|+++ .+|.+.+++++++|||
T Consensus 78 ~~~~~~g~~~~~~~~~~p~~~-~~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 78 CFVRADGRTQWLRWEVRPWYE-GEGRVGGVVIFTEDIT 114 (114)
T ss_dssp EEEC--CCEEEEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred EEEcCCCcEEEEEEEEEEeEC-CCCCEEEEEEEEeeCC
Confidence 778899999999999999999 8999999999999998
No 31
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=99.72 E-value=2.6e-17 Score=124.97 Aligned_cols=125 Identities=23% Similarity=0.427 Sum_probs=112.9
Q ss_pred hhHHHHHHHHhhCCCcEEEecCCCCCC---CEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCc
Q 019110 15 RYTLWVHEALDELPDSFTITDPSISGH---PIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91 (346)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~d~---~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (346)
...++++.+++.++.+++++|.+ + +|+++|+++++++|++.++++|+++..+.++.........+...+..+..
T Consensus 22 ~~~~~~~~i~~~~~~~i~~~d~~---~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (162)
T 3sw1_A 22 INAQLLQSMVDASNDGIVVAEKE---GDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRP 98 (162)
T ss_dssp CCHHHHHHHHHTCSSEEEEEEEE---TTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCC
T ss_pred chHHHHHHHHhhccCcEEEEeCC---CCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCC
Confidence 45678999999999999999997 8 99999999999999999999999988888777777777778888888888
Q ss_pred eEEEEEeeeCCCCeEEEEeeecccccCCCCceeEEEEEeecccccccccccc
Q 019110 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (346)
Q Consensus 92 ~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~k~~~~~~ 143 (346)
+..++...+++|..+|+.+++.|+.+ .+|.+.+++++++|||++|++++++
T Consensus 99 ~~~~~~~~~~~g~~~~~~~~~~~i~~-~~g~~~~~~~~~~DiTe~k~~e~~l 149 (162)
T 3sw1_A 99 CREVLRNYRKDGSAFWNELSITPVKS-DFDQRTYFIGIQKDVSRQVELEREL 149 (162)
T ss_dssp EEEEEEEECTTCCEEEEEEEEEEEEC-SSSSCEEEEEEEEECHHHHHHHHHH
T ss_pred CcceEEEECCCCCEEEEEEEEEEeec-CCCCEEEEEEEEEeCcHHHHHHHHH
Confidence 88899999999999999999999999 8999999999999999999995544
No 32
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.72 E-value=2.6e-17 Score=117.76 Aligned_cols=115 Identities=10% Similarity=0.057 Sum_probs=103.6
Q ss_pred hHHHHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCC--CCcccCCCCChhhHHHHHHHHhcCCceE
Q 019110 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPIE 93 (346)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (346)
++++|+.+++++|.++|.+|.+ +.++++|+++++++||+++++.+.. +..+++|++.......+...+..+..+.
T Consensus 2 s~~~~~~l~~~~~~~i~~~d~~---~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~ 78 (118)
T 3icy_A 2 NAEELQALVDNIPAAIYHLDVS---GQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLT 78 (118)
T ss_dssp HHHHHHHHHTTCCCCCEEECTT---SCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEE
T ss_pred cHHHHHHHHhcCCceEEEEEcC---CCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCce
Confidence 3567899999999999999997 9999999999999999999988765 3567788887777788888888888889
Q ss_pred EEEEeeeCCCCeEEEEeeecccccCCCCceeEEEEEeeccc
Q 019110 94 VNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (346)
Q Consensus 94 ~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (346)
.++++.+++|..+|+..+..|+++ ++|.+.+++|+++|||
T Consensus 79 ~e~r~~~~~g~~~w~~~~~~~~~~-~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 79 LVYRIVTPEGKLHWIEDHMRSSFS-DDGLFSGIDGILCEVT 118 (118)
T ss_dssp EEEEEECTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred EEEEEECCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEecC
Confidence 999999999999999999999999 8999999999999998
No 33
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.72 E-value=4.5e-17 Score=117.05 Aligned_cols=112 Identities=20% Similarity=0.251 Sum_probs=79.1
Q ss_pred hCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCc----eEEEEEeeeC
Q 019110 26 ELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP----IEVNLLNYKK 101 (346)
Q Consensus 26 ~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~~~~~~ 101 (346)
+++++++++|.+ |+|+++|+++++++||++++++|+++..+.++.........+......+.. ...++...++
T Consensus 1 ~~~d~i~~~d~~---g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (119)
T 2vv6_A 1 TIPDAMIVIDGH---GIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRR 77 (119)
T ss_dssp -CCCEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECT
T ss_pred CCcceEEEECCC---CeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEEEeC
Confidence 368999999996 999999999999999999999999987776655433333333333333332 2456677899
Q ss_pred CCCeEEEEeeecccccCCCCceeEEEEEeecccccccccccc
Q 019110 102 DGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (346)
Q Consensus 102 dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~k~~~~~~ 143 (346)
||+.+|+.+++.|+.+ . + ..+++++++|||++|++++++
T Consensus 78 dG~~~~~~~~~~~~~~-~-~-~~~~~~~~~DITerk~~e~~l 116 (119)
T 2vv6_A 78 DGTTFPMHLSIGEMQS-G-G-EPYFTGFVRDLTEHQQTQARL 116 (119)
T ss_dssp TSCEEEEEEEEEEEEE-T-T-EEEEEEEEEECC---------
T ss_pred CCCEEEEEEEEEEEEE-C-C-eEEEEEEEEEcHHHHHHHHHH
Confidence 9999999999999976 3 3 346899999999999995554
No 34
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.72 E-value=1.8e-17 Score=118.73 Aligned_cols=93 Identities=16% Similarity=0.147 Sum_probs=86.1
Q ss_pred cCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCceEEEEEeEecCCCeE
Q 019110 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSF 329 (346)
Q Consensus 250 ~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~ 329 (346)
+++.|++.|. +|+++|+|+++++++||+++|++|+++..++||++.......+...+..+..+..|++++++||+.+
T Consensus 8 ~~~~i~~~d~---~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~ 84 (117)
T 3f1p_A 8 SKTFLSEHSM---DMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYV 84 (117)
T ss_dssp GGEEEEEECT---TCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSSEE
T ss_pred CccEEEEECC---CceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCCCEE
Confidence 4578999999 9999999999999999999999999999999999999888888888888888888999999999999
Q ss_pred EEEEEeeeeecC-CCcc
Q 019110 330 WNLLHISPIRNA-SGKV 345 (346)
Q Consensus 330 ~~~~~~~~i~d~-~G~v 345 (346)
|+++++.|+.|+ +|++
T Consensus 85 w~~~~~~~~~d~~~g~~ 101 (117)
T 3f1p_A 85 WLETQGTVIYNPRNLQP 101 (117)
T ss_dssp EEEEEEEEEEETTTTEE
T ss_pred EEEEeeEEEECCCCCCc
Confidence 999999999987 6764
No 35
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.71 E-value=9.5e-17 Score=114.98 Aligned_cols=101 Identities=11% Similarity=0.079 Sum_probs=83.8
Q ss_pred CccchhHHHHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCc
Q 019110 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314 (346)
Q Consensus 235 ~l~~~~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 314 (346)
.|+..++.++.++++++++|+++|. +|+|+++|+++++++||+++|++|+++..+.++.+. .........+..+..
T Consensus 5 ~l~~se~~~~~l~e~~~d~i~~~d~---~g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (117)
T 2r78_A 5 NLYFQSNAYRALFEHAIDGIFIMDA---EGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDS-GWAAASLARIVGGEP 80 (117)
T ss_dssp SHHHHHHHHHHHHHHCSSEEEEECT---TSBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTT-SHHHHHHHHHHTTCC
T ss_pred HHHHhHHHHHHHHhcCCceEEEECC---CCCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccch-hHHHHHHHHHHcCCc
Confidence 4556677899999999999999999 999999999999999999999999987766443332 223334455666777
Q ss_pred eEEEEEeEecCCCeEEEEEEeeeee
Q 019110 315 CTVRILNYRKDKSSFWNLLHISPIR 339 (346)
Q Consensus 315 ~~~e~~~~~~dG~~~~~~~~~~~i~ 339 (346)
+..|.++++|||+.+|++++++|+.
T Consensus 81 ~~~e~~~~~kdG~~~~v~~~~~~~~ 105 (117)
T 2r78_A 81 LREERTVWTRNGDQLTVELSAHLLP 105 (117)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEECT
T ss_pred EEEEEEEEecCCCEEEEEEEEEEec
Confidence 8899999999999999999999986
No 36
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=99.71 E-value=4e-17 Score=115.15 Aligned_cols=93 Identities=12% Similarity=0.145 Sum_probs=72.5
Q ss_pred HHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCceEEEEEeEec
Q 019110 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRK 324 (346)
Q Consensus 245 ~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 324 (346)
.++++++++|+++|. +|+|+|+|+++++++||+++|++|+++.+++||++.......+. ..+.....++++++|
T Consensus 3 ~lle~~~d~i~v~d~---~G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~~---~~~~~~~~e~r~~~k 76 (111)
T 2vlg_A 3 FPLQTKTDIHAVLAS---NGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFY---NEHHLMPCTFRFIKK 76 (111)
T ss_dssp ------CCEEEEECT---TSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHH---CSCCSSCEEEEEECT
T ss_pred chhhcCCCEEEEEcC---CCeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHHh---ccCCCccEEEEEEcC
Confidence 357889999999998 99999999999999999999999999999999999877655442 233445678999999
Q ss_pred CCCeEEEEEEeeeeecCCC
Q 019110 325 DKSSFWNLLHISPIRNASG 343 (346)
Q Consensus 325 dG~~~~~~~~~~~i~d~~G 343 (346)
||+.+|++++++++.+.++
T Consensus 77 dG~~~wve~~~~~v~~~~~ 95 (111)
T 2vlg_A 77 DHTIVWVEAAVEIVTTRAE 95 (111)
T ss_dssp TSCEEEEEEEEEEC-----
T ss_pred CCCEEEEEEEEEEEecccC
Confidence 9999999999999998765
No 37
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.70 E-value=1.1e-16 Score=136.48 Aligned_cols=120 Identities=38% Similarity=0.724 Sum_probs=107.9
Q ss_pred HHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceEEEEEeee
Q 019110 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYK 100 (346)
Q Consensus 21 ~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 100 (346)
..+++.+|++++++|.+.++|+|+++|+++++++||++++++|+++..+.++.........+.+.+..+..+..+++..+
T Consensus 14 ~~~~~~~~~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 93 (332)
T 2wkq_A 14 ATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLINYT 93 (332)
T ss_dssp CCCGGGCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred HhHhhcCCCcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeEEEEEEEc
Confidence 35789999999999992223999999999999999999999999988888887777777888888888889999999999
Q ss_pred CCCCeEEEEeeecccccCCCCceeEEEEEeecccccccccc
Q 019110 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141 (346)
Q Consensus 101 ~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~k~~~~ 141 (346)
+||..+|+.++..|+++ .+|.+.+++++++|||+++++++
T Consensus 94 ~dG~~~~~~~~~~pi~d-~~g~~~~~v~~~~DITe~k~~e~ 133 (332)
T 2wkq_A 94 KSGKKFWNLFHLQPMRD-QKGDVQYFIGVQLDGTEHVRDAA 133 (332)
T ss_dssp TTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEEESSCCCHHH
T ss_pred CCCCEEEEeeEEEEeEc-CCCCEEEEEEEeccCchhhhhhh
Confidence 99999999999999999 89999999999999999998833
No 38
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.70 E-value=1.8e-16 Score=122.16 Aligned_cols=105 Identities=29% Similarity=0.563 Sum_probs=95.0
Q ss_pred HHHHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCceEEEEE
Q 019110 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320 (346)
Q Consensus 241 ~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 320 (346)
..+..++++++++|+++|...++|+|+++|++|++++||++++++|+++..+.++.+.......+...+..+.++..+++
T Consensus 7 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 86 (176)
T 4hia_A 7 EKIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQVVLR 86 (176)
T ss_dssp HHHHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceEEEEE
Confidence 34778899999999999992112999999999999999999999999998888888888888888888989999999999
Q ss_pred eEecCCCeEEEEEEeeeeecCCCcc
Q 019110 321 NYRKDKSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 321 ~~~~dG~~~~~~~~~~~i~d~~G~v 345 (346)
..++||+.+|+.++++|+.|.+|++
T Consensus 87 ~~~~dG~~~~~~~~~~pi~~~~g~~ 111 (176)
T 4hia_A 87 NYRANDEPFDNLLFLHPVGGRPDAP 111 (176)
T ss_dssp EECTTCCEEEEEEEEEEESSBTTBC
T ss_pred EEcCCCCEEEEEEEEEEeeCCCCCe
Confidence 9999999999999999999999875
No 39
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.69 E-value=2.8e-16 Score=113.07 Aligned_cols=112 Identities=11% Similarity=0.092 Sum_probs=96.3
Q ss_pred HHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcC-CceEEEEEeee
Q 019110 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE-RPIEVNLLNYK 100 (346)
Q Consensus 22 ~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~ 100 (346)
.+++++++++++.|.+ |+++++|+++++++||++++++|+++..+.+|++.......+.+.+..+ .....++++++
T Consensus 7 ~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~ 83 (121)
T 2kdk_A 7 EINVKPTEFITRFAVN---GKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFRA 83 (121)
T ss_dssp CCCCCSSEEEEEECTT---SBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEEEC
T ss_pred ccccCCccEEEEECCC---eeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCCCCccEEEEEEE
Confidence 4678899999999997 9999999999999999999999999888888887776666666666653 44578899999
Q ss_pred CCCCeEEEEeeecccccCCC-CceeEEEEEeecccccc
Q 019110 101 KDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIVSRK 137 (346)
Q Consensus 101 ~dg~~~~~~~~~~~~~~~~~-g~~~~~~~~~~DIT~~k 137 (346)
+||..+|+..+..|+++ .. +.+.+++++..||++.+
T Consensus 84 ~dG~~~~~~~~~~~~~d-~~~~~~~~~v~~~~~i~~~~ 120 (121)
T 2kdk_A 84 KDGSFVTLKSQWFSFTN-PDTKELEYIVSVNTLVLGHS 120 (121)
T ss_dssp SSSCEEEEEEEEEEEEC-CSSSCEEEEEEEEECCSSCC
T ss_pred cCCCEEEEEEEEEEEEC-CCCCeeeEEEEEEEeccccC
Confidence 99999999999999998 54 56777899999999875
No 40
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=99.69 E-value=9.7e-17 Score=121.35 Aligned_cols=120 Identities=13% Similarity=0.114 Sum_probs=100.4
Q ss_pred hhHHHHHHHHhhCCCcEEEec-CCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceE
Q 019110 15 RYTLWVHEALDELPDSFTITD-PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIE 93 (346)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d-~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (346)
+..++|+.+++++|.+++++| .+ ++++++|++++.++|++ +++|+++..++++.........+.+++..+.+..
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~d~~~---~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 88 (158)
T 3k3c_A 14 GAAEDVRRIFEHIPAILVGLEGPD---HRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQS 88 (158)
T ss_dssp CCHHHHHHHHHHCSSEEEEEETTT---TEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHHhcCCceEEEEECCC---cEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHHHHhCCccc
Confidence 566789999999999999999 75 99999999999999999 8999998888777665566677778887777654
Q ss_pred EE-EEe--ee-CC-CCeEEEEeeecccccCCCCceeEEEEEeeccccccccc
Q 019110 94 VN-LLN--YK-KD-GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140 (346)
Q Consensus 94 ~e-~~~--~~-~d-g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~k~~~ 140 (346)
.+ ..+ .+ .+ |..+|+.++..|+++ .+|.+.+++++++|||++|+++
T Consensus 89 ~~~~~~~~~~~~~~g~~~~~~~~~~pi~~-~~g~~~g~~~~~~DITe~k~~e 139 (158)
T 3k3c_A 89 GSEWRLQTDYDGSGVEERYFDFVVTPRRR-ADGSIEGVQLIVDDVTSRVRAR 139 (158)
T ss_dssp EEEEEEEEESSSSCEEEEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHHHH
T ss_pred ccceeEEeccCCCCcceEEEEEEEEEeEC-CCCCEEEEEEEEEehhHHHHHH
Confidence 43 222 22 22 678999999999999 8999999999999999999993
No 41
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.69 E-value=2.8e-16 Score=129.06 Aligned_cols=111 Identities=31% Similarity=0.536 Sum_probs=98.0
Q ss_pred CccchhHHHHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCc
Q 019110 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314 (346)
Q Consensus 235 ~l~~~~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 314 (346)
.++.....+..+++++|++|+++|....+|+|+++|++|++++||+++|++|+++..+.++.+.......+...+..+.+
T Consensus 57 ~l~~~~~~~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 136 (258)
T 3p7n_A 57 EVQPPAQWVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKP 136 (258)
T ss_dssp ----CCHHHHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHHHHHTCC
T ss_pred HHHhHHHHHHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHHHHcCCC
Confidence 34556677999999999999999984324679999999999999999999999999998888888888888889999999
Q ss_pred eEEEEEeEecCCCeEEEEEEeeeeecCCCcc
Q 019110 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 315 ~~~e~~~~~~dG~~~~~~~~~~~i~d~~G~v 345 (346)
+..+++.+++||+.+|+.++++|++|++|++
T Consensus 137 ~~~e~~~~~~dG~~~~~~~~~~pi~d~~g~~ 167 (258)
T 3p7n_A 137 VLVEILNYKKDGTPFRNAVLVAPIYDDDDEL 167 (258)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEECTTSCS
T ss_pred eEEEEEEEcCCCCEEEEeeEEEEEEcCCCCE
Confidence 9999999999999999999999999999875
No 42
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=99.69 E-value=1.4e-16 Score=123.92 Aligned_cols=122 Identities=12% Similarity=0.121 Sum_probs=100.5
Q ss_pred hhHHHHHHHHhhCCCcEEEec-CCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceE
Q 019110 15 RYTLWVHEALDELPDSFTITD-PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIE 93 (346)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d-~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (346)
+.+++|+.+++++|++++++| .+ ++++++|+++++++|++ +++|+++.+++++.........+.+++..+.+..
T Consensus 34 ~~~~~l~~l~~~~~~~i~~~d~~~---g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 108 (185)
T 3kx0_X 34 GAAEDVRRIFEHIPAILVGLEGPD---HRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQS 108 (185)
T ss_dssp CCHHHHHHHHHHCSSEEEEEETTT---TEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSSSHHHHHHHHHHCCCEE
T ss_pred hhHHHHHHHHhcCCceEEEEECCC---cEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhhHHHHHHHHHHcCCccc
Confidence 567889999999999999999 75 99999999999999999 8999998888877666666677778887777655
Q ss_pred EE-EEe--eeC-C-CCeEEEEeeecccccCCCCceeEEEEEeeccccccccccc
Q 019110 94 VN-LLN--YKK-D-GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142 (346)
Q Consensus 94 ~e-~~~--~~~-d-g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~k~~~~~ 142 (346)
.+ ... .++ + |..+|+.++..|+++ .+|.+.+++++++|||++|+++++
T Consensus 109 ~~~~~~~~~~~~~gg~~~~~~~~~~pi~~-~~g~~~g~~~~~~DITerk~~e~~ 161 (185)
T 3kx0_X 109 GSEWRLQTDYDGSGVEERYFDFVVTPRRR-ADGSIEGVQLIVDDVTSRVRARQA 161 (185)
T ss_dssp EEEEEEC--------CCEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHTTCC-
T ss_pred ccceeEEeeccCCCCccEEEEEEEEEEEC-CCCCEEEEEEEEEeCCHHHHHHHH
Confidence 43 222 222 2 788999999999999 899999999999999999999766
No 43
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.68 E-value=3.5e-16 Score=114.52 Aligned_cols=98 Identities=39% Similarity=0.794 Sum_probs=82.9
Q ss_pred HHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCceEEEEEeEec
Q 019110 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRK 324 (346)
Q Consensus 245 ~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 324 (346)
.++++++++|+++|...++|+|+|+|++|++++||+++|++|+++..+.++.........+...+..+.++..+++.++|
T Consensus 3 ~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k 82 (132)
T 2pr5_A 3 HMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKK 82 (132)
T ss_dssp ---CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECT
T ss_pred hHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEEEEec
Confidence 46889999999999821123999999999999999999999999887777777666667777888888889999999999
Q ss_pred CCCeEEEEEEeeeeecCC
Q 019110 325 DKSSFWNLLHISPIRNAS 342 (346)
Q Consensus 325 dG~~~~~~~~~~~i~d~~ 342 (346)
||+.+|+.++++|+.+++
T Consensus 83 dG~~~~~~~~~~~~~~~~ 100 (132)
T 2pr5_A 83 DGTMFWNELNIDPMEIED 100 (132)
T ss_dssp TSCEEEEEEEEEEEEETT
T ss_pred CCCeeeeEEEEEeccCCC
Confidence 999999999999998764
No 44
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.68 E-value=4.8e-16 Score=118.35 Aligned_cols=114 Identities=39% Similarity=0.720 Sum_probs=98.5
Q ss_pred cCCCccchhHHHHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhc
Q 019110 232 SLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQT 311 (346)
Q Consensus 232 ~~~~l~~~~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~ 311 (346)
....+......+..++++++++|+++|...++|+|+++|+++++++||++++++|+++..+.++.+.......+...+..
T Consensus 26 ~~~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~ 105 (166)
T 3ue6_A 26 ANRILEDPDYSLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNAITK 105 (166)
T ss_dssp -----CCCCCHHHHHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHHHhc
Confidence 34455666778999999999999999983235999999999999999999999999998888888888888888888888
Q ss_pred CCceEEEEEeEecCCCeEEEEEEeeeeecCCCcc
Q 019110 312 EQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 312 ~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~G~v 345 (346)
+.++..+++..+++|..+|+.+++.|+.|++|++
T Consensus 106 ~~~~~~e~~~~~~~g~~~~~~~~~~~i~~~~g~~ 139 (166)
T 3ue6_A 106 GVDTSVCLLNYRQDGTTFWNLFFVAGLRDSKGNI 139 (166)
T ss_dssp TCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCE
T ss_pred CCceEEEEEEEcCCCCEEEEEEEEEeeeCCCCCE
Confidence 9999999999999999999999999999988875
No 45
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.68 E-value=5.4e-16 Score=124.79 Aligned_cols=111 Identities=20% Similarity=0.465 Sum_probs=102.9
Q ss_pred HHHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceEEEEE
Q 019110 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLL 97 (346)
Q Consensus 18 ~~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 97 (346)
++++.++++++++++++|.+ |+|+++|++|++++||++++++|+++..+.++.........+.+.+..+.++..++.
T Consensus 111 ~~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 187 (227)
T 3ewk_A 111 ARLKQAMDANSEMILLTDRA---GRIIYANPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQPWSGRLL 187 (227)
T ss_dssp HHHHHHHHTCCSEEEEECTT---SCEEEECHHHHHHHTCCTHHHHSSCGGGGBCTTSCHHHHHHHHHHHHHTCCEECCEE
T ss_pred HHHHHHHhcCcCeEEEEcCC---CcEEEEchHHHHHhCCCHHHHcCCChhhccCCCCCHHHHHHHHHHHHcCCceeEEEE
Confidence 45778999999999999996 999999999999999999999999988888888888888889999999999999999
Q ss_pred eeeCCCC------eEEEEeeecccccCCCCceeEEEEEeec
Q 019110 98 NYKKDGT------PFWMLFKMSLVFGKEDGRATHFVAVQVP 132 (346)
Q Consensus 98 ~~~~dg~------~~~~~~~~~~~~~~~~g~~~~~~~~~~D 132 (346)
.++++|. .+|+.+++.|+++ .+|.+.+++++.+|
T Consensus 188 ~~~k~G~~~~dg~~~~~~~~~~pi~d-~~g~~~~~v~i~~D 227 (227)
T 3ewk_A 188 NRRRTGPAPHDAEDYWAEISTTPIHT-DGNGLVGYVQIQHD 227 (227)
T ss_dssp EEEECCSSSSCEEEEEEEEEEEEEEC-SSSCEEEEEEEEEC
T ss_pred EECCCCCcCcccceEEEEEEEEEEEC-CCCCEEEEEEEecC
Confidence 9999997 8999999999999 89999999999987
No 46
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.67 E-value=3.1e-16 Score=112.80 Aligned_cols=95 Identities=16% Similarity=0.084 Sum_probs=84.7
Q ss_pred HHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcC-CceEEEEEeEec
Q 019110 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE-QACTVRILNYRK 324 (346)
Q Consensus 246 ~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~ 324 (346)
++++++++|+++|. +|+++++|+++++++||+++|++|+++..++||++.......+.+.+..+ .....+++++++
T Consensus 8 ~~~~~~~~i~~~d~---~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~~ 84 (121)
T 2kdk_A 8 INVKPTEFITRFAV---NGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFRAK 84 (121)
T ss_dssp CCCCSSEEEEEECT---TSBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEEECS
T ss_pred cccCCccEEEEECC---CeeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEc
Confidence 46788999999999 99999999999999999999999999888999999888777777777654 446889999999
Q ss_pred CCCeEEEEEEeeeeecCCC
Q 019110 325 DKSSFWNLLHISPIRNASG 343 (346)
Q Consensus 325 dG~~~~~~~~~~~i~d~~G 343 (346)
||+.+|++++++|++|.+|
T Consensus 85 dG~~~~~~~~~~~~~d~~~ 103 (121)
T 2kdk_A 85 DGSFVTLKSQWFSFTNPDT 103 (121)
T ss_dssp SSCEEEEEEEEEEEECCSS
T ss_pred CCCEEEEEEEEEEEECCCC
Confidence 9999999999999999865
No 47
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.67 E-value=4.2e-16 Score=115.68 Aligned_cols=108 Identities=16% Similarity=0.224 Sum_probs=92.7
Q ss_pred CccchhHHHHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcC--CccccccCCcchhHHHHHHHHHhcC
Q 019110 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQ--NCRFLNGVDTDTTVLYQIKESIQTE 312 (346)
Q Consensus 235 ~l~~~~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~--~~~~l~~~~~~~~~~~~~~~~~~~~ 312 (346)
.|+..++.|..+++.+++++|.+|. ++.++++|+++++++||+++++.+. .+..++||++...+...+...+..+
T Consensus 3 aL~~se~rl~~~~~~~~~g~w~~d~---~~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~ 79 (142)
T 3mr0_A 3 ALSASEERFQLAVSGASAGLWDWNP---KTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHR 79 (142)
T ss_dssp ------CCHHHHHHHTTCEEEEECT---TTCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCcEEEEEEc---CCCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCC
Confidence 4566777899999999999999999 8899999999999999999998774 4677889999999999999989888
Q ss_pred CceEEEEEeEecCCCeEEEEEEeeeeecCCCcc
Q 019110 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 313 ~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~G~v 345 (346)
.++..|++++++||+++|+..++.|++|++|++
T Consensus 80 ~~~~~e~r~~~~~G~~~w~~~~~~~~~d~~g~~ 112 (142)
T 3mr0_A 80 DTYDVEYRVRTRSGDFRWIQSRGQALWNSAGEP 112 (142)
T ss_dssp CCEEEEEEEECTTSCEEEEEEEEEEEECTTSCE
T ss_pred CceEEEEEEECCCCCEEEEEEEEEEEECCCCCE
Confidence 899999999999999999999999999999975
No 48
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.67 E-value=2.7e-16 Score=113.14 Aligned_cols=120 Identities=10% Similarity=0.058 Sum_probs=97.5
Q ss_pred HHHHhhhHHHHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCC--CCcccCCCCChhhHHHHHHHHh
Q 019110 10 QSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIR 87 (346)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~--~~~~~~~~~~~~~~~~~~~~~~ 87 (346)
+++. +++++++.+++++|.+++++|.+ +++++++|+++++++|+++++++|.. +..+.++++.......+.. +.
T Consensus 4 ~~l~-~~~~~~~~~~~~~~~~i~~~d~~--~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 79 (125)
T 3eeh_A 4 QQAA-KSERRVRELTEATNDILWEFTAD--LSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQS-LM 79 (125)
T ss_dssp -------CHHHHHHHSCCCCEEEEEETT--SSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHH-HH
T ss_pred HHHH-HHHHHHHHHHhcCCceEEEEEcC--CCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHH-HH
Confidence 3443 56778999999999999999984 38999999999999999999999876 4455566555555555544 55
Q ss_pred cCCceEEEEEeeeCCCCeEEEEeeecccccCCCCceeEEEEEeeccc
Q 019110 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (346)
Q Consensus 88 ~~~~~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (346)
.+.....++++.+++|..+|+.++..|+.+ .+|.+.+++++++|||
T Consensus 80 ~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 80 DGESADVECRVNATEEYQRWVWIQGEPITN-DAGETVRVAGFARDIT 125 (125)
T ss_dssp TTCCEEEEEEECGGGTTCEEEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred cCCCccEEEEEEcCCCCEEEEEEecEEEEC-CCCCEEEEEEEEEecC
Confidence 677788899999999999999999999999 8999999999999998
No 49
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.66 E-value=1.8e-15 Score=109.66 Aligned_cols=120 Identities=13% Similarity=0.148 Sum_probs=88.7
Q ss_pred hhhhHHHHHhhhHHHHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhh--cCCCCCcccCCCCChhhHHHH
Q 019110 5 LGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEI--IGRNGRMFQGPRTNRRTIMEI 82 (346)
Q Consensus 5 ~~~~e~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~--~g~~~~~~~~~~~~~~~~~~~ 82 (346)
.++.|+++. +++++|+.+++++|++++++|.+ |+|+++|+++++++||+++++ +|++...+.+ +.......+
T Consensus 5 r~~~e~~L~-~~~~~~~~l~e~~~~~i~~~d~~---g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~--~~~~~~~~~ 78 (126)
T 3bwl_A 5 RKRREKRLE-ETSSRLEALFENSPDMIDVLDAD---GTICEVNQRFCAELGYDESEVLGRSIWEFDLMF--DAEDVQTQL 78 (126)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHCSSEEEEECTT---CBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC--CHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHhhCCcEEEEEcCC---CCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC--CHHHHHHHH
Confidence 456677776 77889999999999999999996 999999999999999999999 4566555554 222222211
Q ss_pred HHHHhcCCceEEEEEeeeCCCCeEEEEeeecccccCCCCceeEEEEEeeccc
Q 019110 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (346)
Q Consensus 83 ~~~~~~~~~~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (346)
.. ...+....++.++.++||..+|+.++..|+.. +|.. +++++++|||
T Consensus 79 ~~-~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~~--~~~~-~~~~~~~DIT 126 (126)
T 3bwl_A 79 SG-FSVDERRKFEGLYERRDGSTMSVEVHLLRFNL--EGED-RFLAISRDIT 126 (126)
T ss_dssp HT-CCTTCEEEEEEEEECTTSCEEEEEEEEEEEEE--TTEE-EEEEEEEEC-
T ss_pred HH-HhcCCCcceEEEEEeCCCCEEEEEEEeEEEec--CCcE-EEEEEEEeCC
Confidence 11 12233455667778999999999988888744 4554 5788999998
No 50
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.66 E-value=3.6e-16 Score=114.18 Aligned_cols=101 Identities=23% Similarity=0.232 Sum_probs=81.0
Q ss_pred hHHHHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCc----e
Q 019110 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA----C 315 (346)
Q Consensus 240 ~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~ 315 (346)
+..++.++++++++|+++|. +|+|+++|+++++++||+++|++|+++..++++.+.......+......+.. .
T Consensus 15 ~~~~~~l~~~~~d~i~~~d~---~g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (130)
T 1d06_A 15 DAHLRSILDTVPDATVVSAT---DGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQRYMATGEKRIIGI 91 (130)
T ss_dssp TSCHHHHHTTCSSEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTS
T ss_pred HHHHHHHHhhCcCeEEEECC---CCeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHHHHHhcCCccccCC
Confidence 34478899999999999999 9999999999999999999999999988887776654444444444433332 3
Q ss_pred EEEEEeEecCCCeEEEEEEeeeeecCCC
Q 019110 316 TVRILNYRKDKSSFWNLLHISPIRNASG 343 (346)
Q Consensus 316 ~~e~~~~~~dG~~~~~~~~~~~i~d~~G 343 (346)
..+++.++|||+.+|++++++|+.++++
T Consensus 92 ~~e~~~~~kdG~~~~~~~~~~~~~~~~~ 119 (130)
T 1d06_A 92 DRVVSGQRKDGSTFPMKLAVGEMRSGGE 119 (130)
T ss_dssp CEEEEEECTTSCEEEEEEEEEEEEETTE
T ss_pred eeEEEEEeCCCCEEEEEEEEEEEEECCe
Confidence 4577889999999999999999987543
No 51
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.66 E-value=1.4e-15 Score=107.94 Aligned_cols=100 Identities=44% Similarity=0.907 Sum_probs=88.6
Q ss_pred HHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCceEEEEEeEecC
Q 019110 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKD 325 (346)
Q Consensus 246 ~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~d 325 (346)
++++++++++++|...++|+|+++|+++++++||++++++|+++..+.++.........+...+..+..+..+++..+++
T Consensus 2 ~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (115)
T 4eet_B 2 SPEFIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETTVQLINYTKS 81 (115)
T ss_dssp ---CCCCSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTT
T ss_pred ccccCCCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcceEEEEecCC
Confidence 46889999999998444689999999999999999999999998888888888778888888888899999999999999
Q ss_pred CCeEEEEEEeeeeecCCCcc
Q 019110 326 KSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 326 G~~~~~~~~~~~i~d~~G~v 345 (346)
|+.+|+.+++.|+.+.+|++
T Consensus 82 g~~~~~~~~~~~~~~~~g~~ 101 (115)
T 4eet_B 82 GKKFWNLLHLQPVRDQKGEL 101 (115)
T ss_dssp CCEEEEEEEEEEEECTTSCE
T ss_pred CCEEEEEEEEEEEECCCCCE
Confidence 99999999999999998865
No 52
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.66 E-value=9.7e-16 Score=113.30 Aligned_cols=116 Identities=39% Similarity=0.742 Sum_probs=105.4
Q ss_pred HHHHHhhCCCcEEEecC---CCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceEEEE
Q 019110 20 VHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNL 96 (346)
Q Consensus 20 ~~~~~~~~~~~i~~~d~---~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 96 (346)
++.+++.+|.+++++|. + +.++++|++++.++|++.++++|+++..+.++.........+...+..+.++..++
T Consensus 4 l~~~~~~~~~~i~~~d~~~~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (146)
T 2v0u_A 4 LATTLERIEKNFVITDPRLPD---NPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQL 80 (146)
T ss_dssp CCCTGGGSSSCEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhcCCCcEEEEcCCCCC---ceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCcceEE
Confidence 34678999999999998 7 99999999999999999999999998888777777777777888888888888899
Q ss_pred EeeeCCCCeEEEEeeecccccCCCCceeEEEEEeecccccccc
Q 019110 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (346)
Q Consensus 97 ~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~k~~ 139 (346)
...+++|..+|+.++..|+.+ .+|.+.+++++++|||++++.
T Consensus 81 ~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~~~~ 122 (146)
T 2v0u_A 81 INYTKSGKKFWNLFHLQPMRD-QKGDVQYFIGVQLDGTEHVRD 122 (146)
T ss_dssp EEECTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEEESSCCCH
T ss_pred EEEecCCcEEEEEEEEEEeEC-CCCCEEEEEEEEeechHHHHH
Confidence 999999999999999999999 899999999999999999986
No 53
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=99.65 E-value=4.5e-16 Score=113.05 Aligned_cols=99 Identities=11% Similarity=0.049 Sum_probs=78.0
Q ss_pred HHHHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcC-------C
Q 019110 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE-------Q 313 (346)
Q Consensus 241 ~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~-------~ 313 (346)
..+..++++++++|+++|. +|+|+++|+++++++||++++++|+++..++++++.......+......+ .
T Consensus 7 ~~l~~i~~~~~d~i~~~D~---~g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (129)
T 3mfx_A 7 ETIELFIQHLTEAMILVNA---NGFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPVQ 83 (129)
T ss_dssp HHHHHHHTTCSSEEEEEET---TSBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCSC
T ss_pred HHHHHHHhcCCceEEEECC---CCEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHHHHHHHHhcCcccccccC
Confidence 3478899999999999999 99999999999999999999999999988888776543322222211111 1
Q ss_pred ceEEEEEeEecCCCeEEEEEEeeeeecCC
Q 019110 314 ACTVRILNYRKDKSSFWNLLHISPIRNAS 342 (346)
Q Consensus 314 ~~~~e~~~~~~dG~~~~~~~~~~~i~d~~ 342 (346)
.+..|++.+++||+.+|++++++|+.+++
T Consensus 84 ~~~~E~~~~rkdG~~~~velsis~i~~~~ 112 (129)
T 3mfx_A 84 HPAQETTLICASGKAKDVELSISYIPGHE 112 (129)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEECSSS
T ss_pred CCceEEEEEcCCCCEEEEEEEEEEecCCC
Confidence 34578999999999999999999998443
No 54
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.64 E-value=6.5e-16 Score=111.39 Aligned_cols=107 Identities=15% Similarity=0.018 Sum_probs=84.9
Q ss_pred ccchhHHHHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhc--CCccccccCCcchhHHHHHHHHHhcCC
Q 019110 236 MGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVG--QNCRFLNGVDTDTTVLYQIKESIQTEQ 313 (346)
Q Consensus 236 l~~~~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g--~~~~~l~~~~~~~~~~~~~~~~~~~~~ 313 (346)
|+..+..+..++++++++++++|. ++.++++|+++++++||++++++| ..+..+++|++.......+...+..+.
T Consensus 2 l~~~~~~l~~~~~~~~~~i~~~d~---~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 78 (125)
T 3nja_A 2 NAMAEKLLHTAESDAGIGSWVLHM---ESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDR 78 (125)
T ss_dssp ---------------CCEEEEEET---TTTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCC
T ss_pred cHHHHHHHHHHHHhCCeeEEEEEc---CCCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCC
Confidence 345566788999999999999999 899999999999999999999998 456677899999888888888888888
Q ss_pred ceEEEEEeEecCCCeEEEEEEeeeeecCCCcc
Q 019110 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 314 ~~~~e~~~~~~dG~~~~~~~~~~~i~d~~G~v 345 (346)
++..++++.+++|+.+|+.+++.|+.+.+|++
T Consensus 79 ~~~~e~~~~~~~g~~~~~~~~~~~~~~~~g~~ 110 (125)
T 3nja_A 79 PFDVEYRIVRPDGQVRELLERNHIQRQASGQV 110 (125)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEEEEECTTSCE
T ss_pred CceEEEEEECCCCCEEEEEEeeEEEECCCCCE
Confidence 89999999999999999999999999998875
No 55
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.64 E-value=5.3e-16 Score=110.83 Aligned_cols=103 Identities=9% Similarity=-0.019 Sum_probs=94.6
Q ss_pred hHHHHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCC--ccccccCCcchhHHHHHHHHHhcCCceEE
Q 019110 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQN--CRFLNGVDTDTTVLYQIKESIQTEQACTV 317 (346)
Q Consensus 240 ~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (346)
+++++.++++++++++.+|. ++.++++|+++++++||+++++.|.. +..++||++...+...+...+..+.++..
T Consensus 3 ~~~~~~l~~~~~~~i~~~d~---~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~ 79 (118)
T 3icy_A 3 AEELQALVDNIPAAIYHLDV---SGQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLTL 79 (118)
T ss_dssp HHHHHHHHTTCCCCCEEECT---TSCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHHHhcCCceEEEEEc---CCCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCceE
Confidence 45688999999999999999 99999999999999999999998875 46678999999888888888888889999
Q ss_pred EEEeEecCCCeEEEEEEeeeeecCCCcc
Q 019110 318 RILNYRKDKSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 318 e~~~~~~dG~~~~~~~~~~~i~d~~G~v 345 (346)
|+++++++|+.+|+..++.|+++++|++
T Consensus 80 e~r~~~~~g~~~w~~~~~~~~~~~~g~~ 107 (118)
T 3icy_A 80 VYRIVTPEGKLHWIEDHMRSSFSDDGLF 107 (118)
T ss_dssp EEEEECTTCCEEEEEEEEEEEECTTSCE
T ss_pred EEEEECCCCCEEEEEEEEEEEECCCCCE
Confidence 9999999999999999999999999875
No 56
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=99.64 E-value=2.5e-16 Score=144.63 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=104.8
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceEEEE
Q 019110 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNL 96 (346)
Q Consensus 17 ~~~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 96 (346)
.+++..++++++++++++|.+ |+|+++|++|++++||+.++++|+......++++... ...+.+.+..+..+..++
T Consensus 517 ~~~~~~lle~a~~~i~~~D~~---grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~~-~~~i~~~l~~g~~~~~E~ 592 (635)
T 4eho_A 517 VPQASSQVHASMQPVLITDAE---GRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESNDF-LRNVAELIDHGRGWRGEV 592 (635)
T ss_dssp SSSHHHHHHHCSSCCEEEETT---CCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTHH-HHHHHHHHHHCCCBCCCC
T ss_pred HHHHHHHHHhCCCcEEEECCC---CeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHHH-HHHHHHHHHcCCcEEEEE
Confidence 345778899999999999997 9999999999999999999999998766666665544 456667777888888899
Q ss_pred EeeeCCCCeEEEEeeecccccCCCCceeEEEEEeecccccccc
Q 019110 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (346)
Q Consensus 97 ~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~k~~ 139 (346)
+++++||+.+|+.+++.|++| .+|++.|++++++|||++|++
T Consensus 593 ~~~~~dG~~~~~~~~~~pv~d-~~G~v~g~v~i~~DITerK~a 634 (635)
T 4eho_A 593 LLRGAGNRPLPLAVRADPVTR-TEDQSLGFVLIFSDATDRRTA 634 (635)
T ss_dssp EECCSSSSCEECCCCEEEECS-TTSSCCEEEECCCCCSSSCCC
T ss_pred EEEccCCcEEEEEEEEEEEEC-CCCCEEEEEEEEEeCchHhhC
Confidence 999999999999999999999 999999999999999999987
No 57
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.63 E-value=6.6e-16 Score=111.67 Aligned_cols=117 Identities=12% Similarity=0.116 Sum_probs=89.3
Q ss_pred HHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceEEEEEeee
Q 019110 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYK 100 (346)
Q Consensus 21 ~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 100 (346)
+.++++++++++++|.+ |+++++|+++++++|++.++++|+++..+.++.+.......+.....++.. ..++++.+
T Consensus 2 ~~l~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 77 (126)
T 3mjq_A 2 KNFLETIEDMILIINRE---GRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKE-SLPLSLEK 77 (126)
T ss_dssp CTTGGGCSSEEEEEETT---SBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCCS-EEEEEEEC
T ss_pred hhHHhhCCceEEEEeCC---CcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCCCc-eeEEEEEc
Confidence 46789999999999997 999999999999999999999999888787776666555566666655544 77888889
Q ss_pred CCCCeEEEEeeecccccCCCCceeEEEEEeeccccccccccccc
Q 019110 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGM 144 (346)
Q Consensus 101 ~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~k~~~~~~~ 144 (346)
++|..+|+.++..|... +...+++++++|||++|+++++..
T Consensus 78 ~~g~~~~~~~~~~~~~~---~~~~~~~~~~~DITe~k~a~~~~~ 118 (126)
T 3mjq_A 78 KEGTSIPAKARIWQGKW---HNEPCLFAIIKDLSKEERASSPPF 118 (126)
T ss_dssp TTSCEEEEEEEEEEEES---SSSEEEEEEEEECC----------
T ss_pred cCCCEEEEEEEEEeeeE---CCceEEEEEEEechHHHHhhcccc
Confidence 99999999999887654 335688999999999999955543
No 58
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=99.63 E-value=3.2e-15 Score=106.72 Aligned_cols=107 Identities=10% Similarity=0.129 Sum_probs=85.7
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceEEEE
Q 019110 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNL 96 (346)
Q Consensus 17 ~~~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 96 (346)
.+.++.++++++++++++|.+ |+++++|+++++++||++++++|+++.++.+...... .+.+..+.....+.
T Consensus 12 ~~~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~e~ 83 (118)
T 3olo_A 12 FKFAHYLINNAVEASFCLGDN---WQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHD-----WEEIRQKNNYTFKT 83 (118)
T ss_dssp HHHHHHHHHHCSSEEEEECTT---SBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGGGSC-----HHHHHHHSEEEEEE
T ss_pred HHHHHHHHhcCCceEEEECCC---CcEEEEHHHHHHHHCCCHHHHhCCChhhcccccCHHH-----HHHHHhcCcEEEEE
Confidence 345778999999999999996 9999999999999999999999999877765433222 22233455677888
Q ss_pred EeeeCCCCeEEEEeeecccccCCCCceeEEEEEeeccc
Q 019110 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (346)
Q Consensus 97 ~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (346)
+..+++|..+|+.++..|+.+ . |. .+++++++|||
T Consensus 84 ~~~~~~g~~~~~~~~~~~~~~-~-~~-~~~~~~~~DIT 118 (118)
T 3olo_A 84 RYRSQSGRIFLVEMSLTFLED-Q-ER-RFSCVFVREKS 118 (118)
T ss_dssp EEECTTCCEEEEEEEEEEEEE-T-TE-EEEEEEEEEC-
T ss_pred EEEccCCCEEEEEEEEEEEEE-C-Cc-cEEEEEEEeCC
Confidence 899999999999999999876 3 43 36779999997
No 59
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=99.62 E-value=1e-14 Score=102.01 Aligned_cols=107 Identities=27% Similarity=0.520 Sum_probs=90.4
Q ss_pred CcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCC--CCcccCCCCChhhHHHHHHHHhcCCceEEEEEeeeCCCCeE
Q 019110 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (346)
Q Consensus 29 ~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~ 106 (346)
.+++++|...++|+|+++|+++++++|++.++++|++ ...+.++.........+...+..+.....+....+++|..+
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCF 81 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEE
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEEEcCCCCEE
Confidence 5788888754459999999999999999999999998 44455555555556667777778888888888889999999
Q ss_pred EEEeeecccccCCCCceeEEEEEeeccccc
Q 019110 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (346)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~ 136 (346)
|+.++..|+.+ .+|.+.+++++++|||++
T Consensus 82 ~~~~~~~~~~~-~~g~~~~~~~~~~DiTe~ 110 (110)
T 1byw_A 82 LCLVDVVPVKN-EDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp EEEEEEEEEEC-TTCCEEEEEEEEEEEEEC
T ss_pred EEEEEEEEeec-CCCCEEEEEEEEEeccCC
Confidence 99999999999 899999999999999975
No 60
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.62 E-value=3e-15 Score=106.04 Aligned_cols=102 Identities=13% Similarity=0.154 Sum_probs=83.0
Q ss_pred hHHHHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCceEEEE
Q 019110 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRI 319 (346)
Q Consensus 240 ~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 319 (346)
++.++.+++++|++++++|. +|+++++|+++++++|+++++++|+++..++ |++.......+...+.++.....+.
T Consensus 2 e~~~~~~~~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (114)
T 3luq_A 2 DERLRLFTEHAPAALAMFDR---EMRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVHRRGLAGEVIRVEED 77 (114)
T ss_dssp CHHHHHHHHTCSSEEEEEET---TCBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHHHHHHTTCCEEEEEE
T ss_pred hHHHHHHHhcCCceEEEEcC---CcEEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHHHHHhcCCcceeeee
Confidence 35688899999999999999 9999999999999999999999999988776 5655555555666655444344444
Q ss_pred EeEecCCCeEEEEEEeeeeecCCCcc
Q 019110 320 LNYRKDKSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 320 ~~~~~dG~~~~~~~~~~~i~d~~G~v 345 (346)
++.+++|..+|+.++..|++|.+|++
T Consensus 78 ~~~~~~g~~~~~~~~~~p~~~~~g~~ 103 (114)
T 3luq_A 78 CFVRADGRTQWLRWEVRPWYEGEGRV 103 (114)
T ss_dssp EEEC--CCEEEEEEEEEEEECTTSCE
T ss_pred EEEcCCCcEEEEEEEEEEeECCCCCE
Confidence 88899999999999999999999875
No 61
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.62 E-value=4.9e-15 Score=107.49 Aligned_cols=100 Identities=46% Similarity=0.875 Sum_probs=89.8
Q ss_pred HHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCceEEEEEeEecC
Q 019110 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKD 325 (346)
Q Consensus 246 ~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~d 325 (346)
++++++++|+++|...++|+|+++|+++++++||++++++|+++..+.++.+.......+...+..+..+..+++..+++
T Consensus 2 ~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 81 (128)
T 3t50_A 2 ASEFTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINYKKS 81 (128)
T ss_dssp CCCCCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTT
T ss_pred ccccCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCceeEEEEEcCC
Confidence 46788999999998332579999999999999999999999998888888888888888888888899999999999999
Q ss_pred CCeEEEEEEeeeeecCCCcc
Q 019110 326 KSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 326 G~~~~~~~~~~~i~d~~G~v 345 (346)
|..+|+.+++.|+.+.+|.+
T Consensus 82 g~~~~~~~~~~~i~~~~g~~ 101 (128)
T 3t50_A 82 GEAFWNRLHISPVHNANGRL 101 (128)
T ss_dssp CCEEEEEEEEEEEECTTSCE
T ss_pred CCEEEEEEEEEEEECCCCCE
Confidence 99999999999999988864
No 62
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.62 E-value=2.3e-15 Score=108.09 Aligned_cols=96 Identities=10% Similarity=0.164 Sum_probs=80.5
Q ss_pred HHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcc-hhHHHHHHHHHhcCCceEEEEEe
Q 019110 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD-TTVLYQIKESIQTEQACTVRILN 321 (346)
Q Consensus 243 l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~e~~~ 321 (346)
++.+++++|++|+ +|. +|+|+++|+++++++||++++++|+++..++++... ......+...+..++.+..|+++
T Consensus 5 ~~~~~~~~~~~i~-~~~---~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 80 (120)
T 3mqq_A 5 YKTAFHLAPIGLV-LSR---DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIM 80 (120)
T ss_dssp HHHHHHHCSSEEE-EEE---TTEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEEE
T ss_pred HHHHHhcCCceEE-Eec---CCEEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcceEEEEE
Confidence 7788999999996 476 899999999999999999999999998777654333 34555666667778889999999
Q ss_pred EecCCCeEEEEEEeeeeecCCC
Q 019110 322 YRKDKSSFWNLLHISPIRNASG 343 (346)
Q Consensus 322 ~~~dG~~~~~~~~~~~i~d~~G 343 (346)
+++||+.+|+.++..|+ +.+|
T Consensus 81 ~~~dG~~~~~~~~~~~~-~~~~ 101 (120)
T 3mqq_A 81 KRAGGELFWCHVTGRAL-DRTA 101 (120)
T ss_dssp ECTTSCEEEEEEEEEES-STTS
T ss_pred EeCCCCEEEEEEEEEEC-CCCC
Confidence 99999999999999999 4444
No 63
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=99.62 E-value=1.3e-14 Score=106.16 Aligned_cols=117 Identities=26% Similarity=0.496 Sum_probs=97.8
Q ss_pred HHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCC--CCcccCCCCChhhHHHHHHHHhcCCceEEEE
Q 019110 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPIEVNL 96 (346)
Q Consensus 19 ~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 96 (346)
.+...++.++.+++++|...++++|+++|+++++++|++.++++|++ +..+.++.........+...+..+..+..+.
T Consensus 20 ~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (138)
T 2l0w_A 20 TIIRKFEGQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEERKVEI 99 (138)
T ss_dssp HHHHHHTTTTSEEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCEEEEE
T ss_pred HHHHHHhcCCCCEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCceeEE
Confidence 45566777999999999811129999999999999999999999998 4555555555555666777777777888888
Q ss_pred EeeeCCCCeEEEEeeecccccCCCCceeEEEEEeeccccc
Q 019110 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (346)
Q Consensus 97 ~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~ 136 (346)
...+++|..+|+.++..|+.+ .+|.+.+++++++|||++
T Consensus 100 ~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~ 138 (138)
T 2l0w_A 100 AFYRKDGSCFLCLVDVVPVKN-EDGAVIMFILNFEVVMEK 138 (138)
T ss_dssp EEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEEEEEC
T ss_pred EEECCCCCEEEEEEEEEEEeC-CCCCEEEEEEEEEeccCC
Confidence 888999999999999999999 899999999999999975
No 64
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=99.61 E-value=1.3e-15 Score=108.61 Aligned_cols=94 Identities=14% Similarity=0.095 Sum_probs=84.2
Q ss_pred cCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCC-ccccccCCcchhHHHHHHHHHhcCCceEEEEEeEecCCCe
Q 019110 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQN-CRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSS 328 (346)
Q Consensus 250 ~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~ 328 (346)
+++++|.+|.. +++++|+|+++++++||++++++|.. +..++||++...+...+...+..+.++..|+|++++||+.
T Consensus 2 a~~giw~~d~~--~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~ 79 (115)
T 3h9w_A 2 TKAIPWKINWQ--TMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRALHRDGHY 79 (115)
T ss_dssp -CCEEEEEETT--TTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSCE
T ss_pred cceEEEEEEcC--CCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEEcCCCCE
Confidence 46799999953 78999999999999999999999842 4567899999999999999998888999999999999999
Q ss_pred EEEEEEeeeeecCCCcc
Q 019110 329 FWNLLHISPIRNASGKV 345 (346)
Q Consensus 329 ~~~~~~~~~i~d~~G~v 345 (346)
+|+..++.|++|++|++
T Consensus 80 ~w~~~~~~~~~d~~G~~ 96 (115)
T 3h9w_A 80 VWIRDVVHVVRDDSGEV 96 (115)
T ss_dssp EEEEEEEEEEECTTSCE
T ss_pred EEEEEEEEEEECCCCCE
Confidence 99999999999999976
No 65
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.61 E-value=2.9e-15 Score=113.90 Aligned_cols=123 Identities=20% Similarity=0.253 Sum_probs=86.8
Q ss_pred hhHHHHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCc---
Q 019110 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP--- 91 (346)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 91 (346)
+.+.+++.+++.++++++++|.+ |+++++|++++.++|++.++++|+++..+.++.........+......+..
T Consensus 37 ~~~~~~~~~l~~~~~~i~~~d~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (167)
T 1v9y_A 37 AADGIFFPALEQNMMGAVLINEN---DEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVE 113 (167)
T ss_dssp ---CCHHHHHHTCSSEEEEECTT---SBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC-------
T ss_pred hhhHHHHHHHHhCCCCEEEECCC---CcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHHHhhcCCCccc
Confidence 45567899999999999999996 999999999999999999999999888777766555554555555544432
Q ss_pred -eEEEEEeeeCCCCeEEEEeeecccccCCCCceeEEEEEeecccccccccccc
Q 019110 92 -IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (346)
Q Consensus 92 -~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~k~~~~~~ 143 (346)
+..++...+++|..+|+.++..|+ + .+|.+. ++++++|||+++++++++
T Consensus 114 ~~~~~~~~~~~~g~~~~~~~~~~~~-~-~~g~~~-~~~~~~DiT~~~~~e~~l 163 (167)
T 1v9y_A 114 GMSRELQLEKKDGSKIWTRFALSKV-S-AEGKVY-YLALVRDASVEMAQKEQT 163 (167)
T ss_dssp ---CEEEEECTTSCEEEEEEEEEEE-E-ETTEEE-EEEEEEC-----------
T ss_pred ccceEEEEEcCCCcEEEEEEEEEEE-e-cCCCEE-EEEEEecCcHHHHHHHHH
Confidence 455777888999999999999999 4 467664 899999999999985544
No 66
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.60 E-value=3.8e-15 Score=106.99 Aligned_cols=109 Identities=8% Similarity=0.045 Sum_probs=90.5
Q ss_pred CCCccchhHHHHHHHhccCCcEEEEcCCCCC-CCeeeecHhHHHHcCCChhhhhcCC--ccccccCCcchhHHHHHHHHH
Q 019110 233 LPGMGFISSSLYISLGRIKQSFVLIDPHLPD-MPMVYASDAFLKLTGYDRNEVVGQN--CRFLNGVDTDTTVLYQIKESI 309 (346)
Q Consensus 233 ~~~l~~~~~~l~~~~~~~~~~i~~~d~~~~d-g~i~~~N~~~~~l~G~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~ 309 (346)
+..+....+.+..++++++++++++|. + |+++++|+++++++||++++++|.. +..+++|++.......+.. +
T Consensus 3 e~~l~~~~~~~~~~~~~~~~~i~~~d~---~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 78 (125)
T 3eeh_A 3 KQQAAKSERRVRELTEATNDILWEFTA---DLSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQS-L 78 (125)
T ss_dssp -------CHHHHHHHSCCCCEEEEEET---TSSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEEc---CCCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHH-H
Confidence 345666778899999999999999999 7 9999999999999999999999987 5667788777766666655 5
Q ss_pred hcCCceEEEEEeEecCCCeEEEEEEeeeeecCCCcc
Q 019110 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 310 ~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~G~v 345 (346)
..+..+..++++++++|+.+|+.+++.|+.+.+|++
T Consensus 79 ~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~g~~ 114 (125)
T 3eeh_A 79 MDGESADVECRVNATEEYQRWVWIQGEPITNDAGET 114 (125)
T ss_dssp HTTCCEEEEEEECGGGTTCEEEEEEEEEEECTTSCE
T ss_pred HcCCCccEEEEEEcCCCCEEEEEEecEEEECCCCCE
Confidence 677788999999999999999999999999988864
No 67
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.59 E-value=2.2e-14 Score=102.59 Aligned_cols=104 Identities=15% Similarity=0.171 Sum_probs=93.3
Q ss_pred hhHHHHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCceEEE
Q 019110 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVR 318 (346)
Q Consensus 239 ~~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 318 (346)
..+.+..++++++++++++|. +|+++++|+++++++|+++++++|+++..+.++.........+...+..+..+..+
T Consensus 5 ~~~~~~~~~~~~~~~i~~~d~---~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (124)
T 3lyx_A 5 ILKQRAKAFDYVFDAIVVTDL---QGFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWTGE 81 (124)
T ss_dssp HHHHHHHGGGTCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEEEE
T ss_pred HHHHHHHHHhhcCceEEEECC---CCcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCcccce
Confidence 345688899999999999999 99999999999999999999999999887767777666777788888888999999
Q ss_pred EEeEecCCCeEEEEEEeeeeecCCCcc
Q 019110 319 ILNYRKDKSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 319 ~~~~~~dG~~~~~~~~~~~i~d~~G~v 345 (346)
++..+++|..+|+.++..|+.+.+|++
T Consensus 82 ~~~~~~~g~~~~~~~~~~~~~~~~g~~ 108 (124)
T 3lyx_A 82 IRMLHKDGHIGWIESMCVPIYGENYQM 108 (124)
T ss_dssp EEEECTTSCEEEEEEEEEEEECSTTCE
T ss_pred EEEEccCCCEEEEEEEEEEEECCCCCE
Confidence 999999999999999999999988865
No 68
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=99.59 E-value=1.1e-14 Score=108.76 Aligned_cols=98 Identities=35% Similarity=0.718 Sum_probs=84.0
Q ss_pred HhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCc-----------chhHHHHHHHHHhcCCce
Q 019110 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT-----------DTTVLYQIKESIQTEQAC 315 (346)
Q Consensus 247 ~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~ 315 (346)
+++ +++++++|...++|+|+++|+++++++||++++++|+++..+.+++. .......+...+..+..+
T Consensus 32 ~~~-~~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (149)
T 3d72_A 32 VDT-SVALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAEV 110 (149)
T ss_dssp CCT-TSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHHTCCE
T ss_pred hcC-CccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHHCCCce
Confidence 444 48999999211189999999999999999999999999888877764 556667777888888899
Q ss_pred EEEEEeEecCCCeEEEEEEeeeeecCCCcc
Q 019110 316 TVRILNYRKDKSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 316 ~~e~~~~~~dG~~~~~~~~~~~i~d~~G~v 345 (346)
..+++.+++||+.+|+.++++|++|.+|++
T Consensus 111 ~~e~~~~~~dG~~~~~~~~~~~i~~~~g~~ 140 (149)
T 3d72_A 111 QVEVVNFKKNGQRFVNFLTMIPVRDETGEY 140 (149)
T ss_dssp EEEEEEECTTCCEEEEEEEEEEEECTTSSE
T ss_pred EEEEEEECCCCCEEEEEEEEEEEEcCCCCE
Confidence 999999999999999999999999999875
No 69
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=99.58 E-value=6.4e-15 Score=110.02 Aligned_cols=111 Identities=32% Similarity=0.514 Sum_probs=93.1
Q ss_pred HHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCC-----------ChhhHHHHHHHHhc
Q 019110 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT-----------NRRTIMEIREAIRE 88 (346)
Q Consensus 20 ~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 88 (346)
+..+++.+ .+++++|...++|+|+++|+++++++||++++++|+++..+.++.. .......+...+..
T Consensus 28 ~~~~~~~~-~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (149)
T 3d72_A 28 ELGPVDTS-VALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDR 106 (149)
T ss_dssp CCCSCCTT-SCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHH
T ss_pred HHHhhcCC-ccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHHC
Confidence 33566764 8999999311139999999999999999999999999887777653 55566677778888
Q ss_pred CCceEEEEEeeeCCCCeEEEEeeecccccCCCCceeEEEEEeec
Q 019110 89 ERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132 (346)
Q Consensus 89 ~~~~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~D 132 (346)
+..+..+++..+++|..+|+.++..|+++ .+|.+.+++++++|
T Consensus 107 ~~~~~~e~~~~~~dG~~~~~~~~~~~i~~-~~g~~~~~v~~~~D 149 (149)
T 3d72_A 107 NAEVQVEVVNFKKNGQRFVNFLTMIPVRD-ETGEYRYSMGFQCE 149 (149)
T ss_dssp TCCEEEEEEEECTTCCEEEEEEEEEEEEC-TTSSEEEEEEECCC
T ss_pred CCceEEEEEEECCCCCEEEEEEEEEEEEc-CCCCEEEEEEEEeC
Confidence 88888899999999999999999999999 89999999999877
No 70
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.58 E-value=1.3e-14 Score=123.57 Aligned_cols=100 Identities=45% Similarity=0.944 Sum_probs=92.1
Q ss_pred HHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCceEEEEEeEecC
Q 019110 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKD 325 (346)
Q Consensus 246 ~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~d 325 (346)
++++++++|+++|.+.++|+|+++|+++++++||+++|++|+++..+.+|++.......+...+..+..+..+++.+++|
T Consensus 16 ~~~~~~~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~d 95 (332)
T 2wkq_A 16 TLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKS 95 (332)
T ss_dssp CGGGCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTT
T ss_pred HhhcCCCcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeEEEEEEEcCC
Confidence 47899999999998555799999999999999999999999999988888888888888888899999999999999999
Q ss_pred CCeEEEEEEeeeeecCCCcc
Q 019110 326 KSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 326 G~~~~~~~~~~~i~d~~G~v 345 (346)
|+.+|+.++++|++|.+|++
T Consensus 96 G~~~~~~~~~~pi~d~~g~~ 115 (332)
T 2wkq_A 96 GKKFWNLFHLQPMRDQKGDV 115 (332)
T ss_dssp CCEEEEEEEEEEEECTTSCE
T ss_pred CCEEEEeeEEEEeEcCCCCE
Confidence 99999999999999998875
No 71
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.57 E-value=4.4e-14 Score=101.85 Aligned_cols=104 Identities=42% Similarity=0.877 Sum_probs=92.2
Q ss_pred hhHHHHHHHhccCCcEEEEc---CCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCce
Q 019110 239 ISSSLYISLGRIKQSFVLID---PHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315 (346)
Q Consensus 239 ~~~~l~~~~~~~~~~i~~~d---~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 315 (346)
.+..+..++++++++++++| . +|.++++|+++++++|++.++++|+++..+.++.+.......+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~i~~~d~~d~---~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (130)
T 2z6d_A 4 VSQELKTALSTLQQTFVVSDATQP---HCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKSY 80 (130)
T ss_dssp ---CHHHHHHHTTCEEEEEETTST---TCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHhcccceeeeeccCC---CCcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCcc
Confidence 44568889999999999999 7 89999999999999999999999999888888877777777788888888888
Q ss_pred EEEEEeEecCCCeEEEEEEeeeeecCCCcc
Q 019110 316 TVRILNYRKDKSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 316 ~~e~~~~~~dG~~~~~~~~~~~i~d~~G~v 345 (346)
..+++..+++|..+|+.++..|+.+.+|.+
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~ 110 (130)
T 2z6d_A 81 CGRLLNYKKDGTPFWNLLTVTPIKDDQGNT 110 (130)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEECTTSCE
T ss_pred eeEEEEEcCCCcEEEEEEEEEEEECCCCCe
Confidence 899999999999999999999999988864
No 72
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=99.57 E-value=1.6e-14 Score=102.94 Aligned_cols=96 Identities=11% Similarity=0.127 Sum_probs=78.9
Q ss_pred hHHHHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCceEEEE
Q 019110 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRI 319 (346)
Q Consensus 240 ~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 319 (346)
...++.++++++++|+++|. +|+|+++|+++++++||++++++|+++..+.++..... ...+..+..+..|.
T Consensus 12 ~~~~~~~~~~~~~~i~~~d~---~g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~e~ 83 (118)
T 3olo_A 12 FKFAHYLINNAVEASFCLGD---NWQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHD-----WEEIRQKNNYTFKT 83 (118)
T ss_dssp HHHHHHHHHHCSSEEEEECT---TSBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGGGSC-----HHHHHHHSEEEEEE
T ss_pred HHHHHHHHhcCCceEEEECC---CCcEEEEHHHHHHHHCCCHHHHhCCChhhcccccCHHH-----HHHHHhcCcEEEEE
Confidence 33467889999999999999 99999999999999999999999999887764433322 22334466788899
Q ss_pred EeEecCCCeEEEEEEeeeeecCCC
Q 019110 320 LNYRKDKSSFWNLLHISPIRNASG 343 (346)
Q Consensus 320 ~~~~~dG~~~~~~~~~~~i~d~~G 343 (346)
++++++|+.+|+.++..|+.+.++
T Consensus 84 ~~~~~~g~~~~~~~~~~~~~~~~~ 107 (118)
T 3olo_A 84 RYRSQSGRIFLVEMSLTFLEDQER 107 (118)
T ss_dssp EEECTTCCEEEEEEEEEEEEETTE
T ss_pred EEEccCCCEEEEEEEEEEEEECCc
Confidence 999999999999999999987543
No 73
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=99.56 E-value=2.1e-14 Score=104.18 Aligned_cols=111 Identities=11% Similarity=0.070 Sum_probs=83.3
Q ss_pred HHHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCC-------
Q 019110 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER------- 90 (346)
Q Consensus 18 ~~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 90 (346)
+.++.++++++++++++|.+ |+|+++|+++++++||++++++|+++..++++.+.......+......+.
T Consensus 7 ~~l~~i~~~~~d~i~~~D~~---g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (129)
T 3mfx_A 7 ETIELFIQHLTEAMILVNAN---GFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPVQ 83 (129)
T ss_dssp HHHHHHHTTCSSEEEEEETT---SBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCSC
T ss_pred HHHHHHHhcCCceEEEECCC---CEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHHHHHHHHhcCcccccccC
Confidence 46888999999999999997 99999999999999999999999998888877654432222111111111
Q ss_pred ceEEEEEeeeCCCCeEEEEeeecccccCCCCceeEEEEEeecccc
Q 019110 91 PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (346)
Q Consensus 91 ~~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~ 135 (346)
....++...++||+.+|+.++++|+.+ +.. .++++++|...
T Consensus 84 ~~~~E~~~~rkdG~~~~velsis~i~~---~~~-~~v~~~~~~~~ 124 (129)
T 3mfx_A 84 HPAQETTLICASGKAKDVELSISYIPG---HEP-MFVMVMHDLEH 124 (129)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEECS---SSC-EEEEEEEEC--
T ss_pred CCceEEEEEcCCCCEEEEEEEEEEecC---CCc-EEEEEEechhh
Confidence 235788889999999999999999965 232 37788888653
No 74
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=99.56 E-value=4.8e-15 Score=106.99 Aligned_cols=108 Identities=10% Similarity=0.081 Sum_probs=76.0
Q ss_pred hHHHHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceEEE
Q 019110 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (346)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (346)
++++++.+++++|++++++|.+ |+|+++|+++++++|+++++++|+++..+.+++...............+...
T Consensus 17 ~~~~~~~i~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 90 (125)
T 3fc7_A 17 TRKKFESLVSDSPDGIVHLTTN---GTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLEAGKSAVENGTAT--- 90 (125)
T ss_dssp ---------CCSCCEEEEEETT---SBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHHHHHHHHHHHHHTSCE---
T ss_pred HHHHHHHHHhcCCCeEEEEcCC---CeEEEECHHHHHHhCCCHHHHcCccHHHhCCHHHHHHHHHHHHHHhcCCCeE---
Confidence 6778999999999999999997 9999999999999999999999999887773322222222224445555433
Q ss_pred EEeeeCCCC-eEEEEeeecccccCCCCceeEEEEEeeccc
Q 019110 96 LLNYKKDGT-PFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (346)
Q Consensus 96 ~~~~~~dg~-~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (346)
...+|. .+|+.++..|+.+ +|...+++++++|||
T Consensus 91 ---~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 91 ---RSEDAVGGRHYHNQYIPVDS--HRKSDTFQLVSRDIT 125 (125)
T ss_dssp ---EEEEEETTEEEEEEEEESST--TTTTTEEEEEEEECC
T ss_pred ---EeEcCCCcEEEEEEEEeEec--CCCeEEEEEEEecCC
Confidence 223444 7899999999877 467789999999998
No 75
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.55 E-value=2.3e-14 Score=102.72 Aligned_cols=91 Identities=21% Similarity=0.211 Sum_probs=72.1
Q ss_pred cCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCc----eEEEEEeEecC
Q 019110 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA----CTVRILNYRKD 325 (346)
Q Consensus 250 ~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~e~~~~~~d 325 (346)
++++|+++|. +|+|+++|+++++++||+++|++|+++..++++.+.......+......+.. ...+++.++||
T Consensus 2 ~~d~i~~~d~---~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 78 (119)
T 2vv6_A 2 IPDAMIVIDG---HGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRD 78 (119)
T ss_dssp CCCEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTT
T ss_pred CcceEEEECC---CCeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEEEeCC
Confidence 5789999999 9999999999999999999999999988887666554433334343333332 34577889999
Q ss_pred CCeEEEEEEeeeeecCCC
Q 019110 326 KSSFWNLLHISPIRNASG 343 (346)
Q Consensus 326 G~~~~~~~~~~~i~d~~G 343 (346)
|+.+|++++++|+.+.++
T Consensus 79 G~~~~~~~~~~~~~~~~~ 96 (119)
T 2vv6_A 79 GTTFPMHLSIGEMQSGGE 96 (119)
T ss_dssp SCEEEEEEEEEEEEETTE
T ss_pred CCEEEEEEEEEEEEECCe
Confidence 999999999999987543
No 76
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.54 E-value=1.2e-14 Score=108.12 Aligned_cols=100 Identities=15% Similarity=0.225 Sum_probs=80.1
Q ss_pred HHHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCceEEE---
Q 019110 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVR--- 318 (346)
Q Consensus 242 ~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e--- 318 (346)
.+..+++++++||+++|. +|+|+++|+++++++|+++++++|+++.+++++ ....+...+..++..|.+....
T Consensus 23 ~l~~il~~~~~gi~v~D~---~g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~vl~~G~~~~~~~~~ 98 (152)
T 3mxq_A 23 LLSELLDQLSFALCIVRN---DYVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESSSFSSWEQ 98 (152)
T ss_dssp HHHHHHHHHCCEEEEEET---TSBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHHHHHHTSCEEEECCS
T ss_pred HHHHHHhcCCCCEEEEcC---CCEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHHHHhcCCceeeeccc
Confidence 367889999999999999 999999999999999999999999999888877 6666667788888877653321
Q ss_pred ------EEe---EecCCCeEEEEEEeeeeecCCCcc
Q 019110 319 ------ILN---YRKDKSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 319 ------~~~---~~~dG~~~~~~~~~~~i~d~~G~v 345 (346)
++. ..++|..+|..++++|+.|++|++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d~~G~v 134 (152)
T 3mxq_A 99 KPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTI 134 (152)
T ss_dssp SSCSSCC----------CCEEEEEEEEEEECTTSCE
T ss_pred ccccccccccCCCCCCCcEEEEEEEEEEEECCCCCE
Confidence 111 235678889999999999999986
No 77
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=99.54 E-value=8.6e-15 Score=104.83 Aligned_cols=110 Identities=14% Similarity=0.070 Sum_probs=86.3
Q ss_pred hhHHHHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceEE
Q 019110 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (346)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (346)
.+++..+.+++++|++++++|.+ |+|+++|+++++++|+++++++|+++..++++.........+.+.+..+.+...
T Consensus 9 ~~~~~~~~il~~~~~~i~~~D~~---g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (118)
T 3fg8_A 9 HHSSGRENLYFQGGLGFMALDED---LRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGREQQT 85 (118)
T ss_dssp ----CCCCSSSCTTCEEEEECTT---CBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHHHHCCCEEE
T ss_pred cccchHHHHHhhCCceEEEECCC---CeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHHHHHcCCceEE
Confidence 34455678999999999999996 999999999999999999999999988777766555666777788888887776
Q ss_pred EEEeeeCCCCeEEEEeeecccccCCCCceeEEEEEeeccccc
Q 019110 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (346)
Q Consensus 95 e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~ 136 (346)
++.....+| .|+.++..|+.+ +++++++|||++
T Consensus 86 ~~~~~~~~g--~~~~~~~~p~~~-------g~v~~~~DITer 118 (118)
T 3fg8_A 86 RVDSLYSPG--MTIEVTAAADSG-------ALVVHFRDVTAE 118 (118)
T ss_dssp EEECSSSTT--CEEEEEEEEETT-------EEEEEEEECSCC
T ss_pred EEEEEcCCC--eEEEEEEEEcCC-------cEEEEEEeccCC
Confidence 433333355 578888888755 378899999986
No 78
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=99.53 E-value=8.8e-14 Score=105.25 Aligned_cols=105 Identities=31% Similarity=0.575 Sum_probs=95.4
Q ss_pred chhHHHHHHHhccCCcEEEEcCCCCCC---CeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCc
Q 019110 238 FISSSLYISLGRIKQSFVLIDPHLPDM---PMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314 (346)
Q Consensus 238 ~~~~~l~~~~~~~~~~i~~~d~~~~dg---~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 314 (346)
.....+..++++++++++++|. +| +|+++|+++++++||+.++++|+++..+.++.........+...+..+..
T Consensus 22 ~~~~~~~~i~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (162)
T 3sw1_A 22 INAQLLQSMVDASNDGIVVAEK---EGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRP 98 (162)
T ss_dssp CCHHHHHHHHHTCSSEEEEEEE---ETTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCC
T ss_pred chHHHHHHHHhhccCcEEEEeC---CCCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCC
Confidence 3455688999999999999999 89 99999999999999999999999998888888777788888888888999
Q ss_pred eEEEEEeEecCCCeEEEEEEeeeeecCCCcc
Q 019110 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 315 ~~~e~~~~~~dG~~~~~~~~~~~i~d~~G~v 345 (346)
+..+++..+++|..+|+.+++.|+.+.+|.+
T Consensus 99 ~~~~~~~~~~~g~~~~~~~~~~~i~~~~g~~ 129 (162)
T 3sw1_A 99 CREVLRNYRKDGSAFWNELSITPVKSDFDQR 129 (162)
T ss_dssp EEEEEEEECTTCCEEEEEEEEEEEECSSSSC
T ss_pred CcceEEEECCCCCEEEEEEEEEEeecCCCCE
Confidence 9999999999999999999999999988864
No 79
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=99.51 E-value=1.1e-13 Score=111.36 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=85.6
Q ss_pred hHHHHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhh------------CCCchhhcCCCCCcccCCCCChhhHHHHH
Q 019110 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMS------------GFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83 (346)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~------------G~~~~e~~g~~~~~~~~~~~~~~~~~~~~ 83 (346)
...+++.++++++.+++++|.+ |+|+|+|+++++++ ||++++++|+++..+.+. +.....+.
T Consensus 20 e~~~l~~iLd~~~~~vii~D~~---g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~~---~~~~~~~~ 93 (233)
T 3vol_A 20 HMARIKSALDNVSANVMIADND---LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKN---PAHQRHLL 93 (233)
T ss_dssp HHHHHHHHHTTSSSEEEEEETT---SBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSSS---HHHHHHHH
T ss_pred HHHHHHHHHhcCCCcEEEECCC---CcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcCC---HHHHHHHH
Confidence 3456889999999999999997 99999999999998 899999999998777642 22222222
Q ss_pred HHHhcCCceEEEEEeeeCCCCeEEEEeeecccccCCCCceeEEEEEeecccccccc
Q 019110 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (346)
Q Consensus 84 ~~~~~~~~~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~k~~ 139 (346)
+.+. ..+..++. .+| .|+.++..|+++ .+|.+.|++++++|||+++++
T Consensus 94 ~~~~--~~~~~~~~---~~g--~~~~~~~~Pi~d-~~G~~~g~v~~~~DITe~~~~ 141 (233)
T 3vol_A 94 ANLT--GVHKAELN---LGG--RRFSLDVVPVFN-DANERLGSAVQWTDRTEEHRA 141 (233)
T ss_dssp HTCC--SCEEEEEE---ETT--EEEEEEEEEEEC-TTCCEEEEEEEEEECHHHHHH
T ss_pred Hhcc--cceeEEEE---ECC--EEEEEEEEEEEC-CCCCEEEEEEEEehhhHHHHH
Confidence 2221 23333332 345 377899999999 899999999999999999998
No 80
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.51 E-value=2.9e-14 Score=103.12 Aligned_cols=98 Identities=19% Similarity=0.105 Sum_probs=74.5
Q ss_pred cchhHHHHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhh--hcCCccccccCCcchhHHHHHHHHHhcCCc
Q 019110 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEV--VGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314 (346)
Q Consensus 237 ~~~~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~--~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 314 (346)
+..+..++.+++++|++|+++|. +|+|+++|+++++++||+++|+ +|+++..+.+ +.......+.. ...+..
T Consensus 13 ~~~~~~~~~l~e~~~~~i~~~d~---~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~--~~~~~~~~~~~-~~~~~~ 86 (126)
T 3bwl_A 13 EETSSRLEALFENSPDMIDVLDA---DGTICEVNQRFCAELGYDESEVLGRSIWEFDLMF--DAEDVQTQLSG-FSVDER 86 (126)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECT---TCBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC--CHHHHHHHHHT-CCTTCE
T ss_pred HHHHHHHHHHHhhCCcEEEEEcC---CCCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC--CHHHHHHHHHH-HhcCCC
Confidence 34455688899999999999999 9999999999999999999999 4676666655 33333222222 223444
Q ss_pred eEEEEEeEecCCCeEEEEEEeeeeec
Q 019110 315 CTVRILNYRKDKSSFWNLLHISPIRN 340 (346)
Q Consensus 315 ~~~e~~~~~~dG~~~~~~~~~~~i~d 340 (346)
...+.+++++||+.+|+.++..++.+
T Consensus 87 ~~~e~~~~~~dG~~~~~~~~~~~~~~ 112 (126)
T 3bwl_A 87 RKFEGLYERRDGSTMSVEVHLLRFNL 112 (126)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred cceEEEEEeCCCCEEEEEEEeEEEec
Confidence 56677888999999999998888754
No 81
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=99.51 E-value=4.8e-14 Score=99.25 Aligned_cols=93 Identities=17% Similarity=0.165 Sum_probs=69.7
Q ss_pred HHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceEEEEEeeeC
Q 019110 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKK 101 (346)
Q Consensus 22 ~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 101 (346)
.++++++++++++|.+ |+++|+|+++++++||++++++|+++.++.+|++.+.....+. ..+.....+++++++
T Consensus 3 ~lle~~~d~i~v~d~~---G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~~---~~~~~~~~e~r~~~k 76 (111)
T 2vlg_A 3 FPLQTKTDIHAVLASN---GRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFY---NEHHLMPCTFRFIKK 76 (111)
T ss_dssp ------CCEEEEECTT---SBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHH---CSCCSSCEEEEEECT
T ss_pred chhhcCCCEEEEEcCC---CeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHHh---ccCCCccEEEEEEcC
Confidence 4789999999999986 9999999999999999999999999988999888665543332 223344568889999
Q ss_pred CCCeEEEEeeecccccCCCC
Q 019110 102 DGTPFWMLFKMSLVFGKEDG 121 (346)
Q Consensus 102 dg~~~~~~~~~~~~~~~~~g 121 (346)
||+.+|+++++.++.+ ..+
T Consensus 77 dG~~~wve~~~~~v~~-~~~ 95 (111)
T 2vlg_A 77 DHTIVWVEAAVEIVTT-RAE 95 (111)
T ss_dssp TSCEEEEEEEEEEC------
T ss_pred CCCEEEEEEEEEEEec-ccC
Confidence 9999999999999988 544
No 82
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.49 E-value=5.3e-14 Score=121.56 Aligned_cols=106 Identities=8% Similarity=0.018 Sum_probs=88.9
Q ss_pred cEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCc-eEEEEEeeeCCCCeEEE
Q 019110 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP-IEVNLLNYKKDGTPFWM 108 (346)
Q Consensus 30 ~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~dg~~~~~ 108 (346)
.++..+. ||+++|+|+++..++||+++|++|+++..++||++.+.....+.+.+..+.. ...+++++++||.++|+
T Consensus 280 fi~~~~~---dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~vWv 356 (387)
T 4f3l_B 280 YVSRHAI---DGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFITL 356 (387)
T ss_dssp EEEEECT---TSBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCEEEE
T ss_pred EEEEECC---CCEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCEEEE
Confidence 4455565 4999999999999999999999999999999999888887778777766544 45689999999999999
Q ss_pred EeeecccccCCCCceeEEEEEeeccccccc
Q 019110 109 LFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (346)
Q Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~DIT~~k~ 138 (346)
..++.+++++.+|.+.+++|+.+|||+||.
T Consensus 357 ~~~~~~~~~~~~g~~~~ivg~~~dIT~Rk~ 386 (387)
T 4f3l_B 357 RSRWFSFMNPWTKEVEYIVSTNTVVLANVL 386 (387)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEECC----
T ss_pred EEEEEEEECCCCCCEEEEEEEEEEcchhhc
Confidence 999999998338999999999999999975
No 83
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.49 E-value=2.5e-14 Score=122.70 Aligned_cols=106 Identities=8% Similarity=0.089 Sum_probs=94.5
Q ss_pred cEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceEEEEEeeeCCCCeEEEE
Q 019110 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWML 109 (346)
Q Consensus 30 ~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~~~ 109 (346)
.++..+. ||+++|+|+++..++||+++|++|+++..+++|++.+.....+.+.+..|.....+++++++||.++|+.
T Consensus 253 f~~~~~~---dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~~~kdG~~vWv~ 329 (361)
T 4f3l_A 253 FTSRHSL---EWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQ 329 (361)
T ss_dssp EEEEECT---TSBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHHHHHHHHSEEECCCEEEECTTSEEEEEE
T ss_pred eEEEEcC---CceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHHHHHHhCCCcceEEEEEEecCCCEEEEE
Confidence 3444555 4999999999999999999999999999999999888888888888888877777899999999999999
Q ss_pred eeecccccCC-CCceeEEEEEeecccccccc
Q 019110 110 FKMSLVFGKE-DGRATHFVAVQVPIVSRKHM 139 (346)
Q Consensus 110 ~~~~~~~~~~-~g~~~~~~~~~~DIT~~k~~ 139 (346)
.+..|+++ + +|++.+++++.+|||+++..
T Consensus 330 ~~~~~v~~-~~~g~~~~iv~~~~dITe~~~~ 359 (361)
T 4f3l_A 330 THYYITYH-QWNSRPEFIVCTHTVVSYAEVR 359 (361)
T ss_dssp EEEEEEEC-TTTCCEEEEEEEEEECCHHHHH
T ss_pred EEEEEEEc-CCCCCeeEEEEEEEECChhHhh
Confidence 99999999 6 79999999999999998765
No 84
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=99.48 E-value=3.9e-13 Score=100.06 Aligned_cols=119 Identities=13% Similarity=0.123 Sum_probs=92.1
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCCCCEEEEehh---HHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceE
Q 019110 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRG---FLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIE 93 (346)
Q Consensus 17 ~~~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~---~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (346)
.+.+..+++++|++++++|.+ |+|+|+|++ +++++| ..++++|+++..+.++. .......+...+..+....
T Consensus 18 ~~~l~~IL~~~~~gI~~vD~~---g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~~~~~~-~~~~v~~i~~~l~~g~~~~ 92 (151)
T 2qkp_A 18 VEQANLILNHLPLEITFVNKD---DIFQYYNDSVPAAEMVFK-RTPSQVGRNVELCHPPK-VLDKVKKVFELLRNGQRDK 92 (151)
T ss_dssp HHHHHHHHHHSSSEEEEEETT---SBEEEECCCSCGGGCSSC-CCGGGTTSBGGGSSCHH-HHHHHHHHHHHHHTTSBSE
T ss_pred HHHHHHHHHhCCCceEEEcCC---CeEEEEeCCCchhhhhcC-CCHHHcCCCHHHhCCHH-HHHHHHHHHHHHHcCCccE
Confidence 356889999999999999997 999999999 999999 56789999987765432 2223345666677777665
Q ss_pred EEEEeeeCCCCeEEEEeeecccccCCCCceeEEEEEeeccccccccccc
Q 019110 94 VNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142 (346)
Q Consensus 94 ~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~k~~~~~ 142 (346)
.++.....+ ...++.++..|+++ ++|.+.|++.+++|||+.++.+.+
T Consensus 93 ~~~~~~~~~-~~~~v~v~~~Pi~d-~~G~~~G~vev~~Dit~l~~le~~ 139 (151)
T 2qkp_A 93 VNMWFQSER-LGKFVYVTYAAVRD-QAGDFQGVLEYVQDIKPFFELDSE 139 (151)
T ss_dssp EEEEEEETT-TTEEEEEEEEEEEC-TTCCEEEEEEEEEECGGGGGGGGC
T ss_pred EEEEEecCC-CCeEEEEEEEEEEC-CCCCEEEEEEEEEECHHHHhhhhh
Confidence 555543332 12567889999999 899999999999999999887333
No 85
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=99.48 E-value=7.5e-13 Score=92.28 Aligned_cols=94 Identities=32% Similarity=0.622 Sum_probs=79.7
Q ss_pred CcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCC--ccccccCCcchhHHHHHHHHHhcCCceEEEEEeEecCCCeE
Q 019110 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQN--CRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSF 329 (346)
Q Consensus 252 ~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~ 329 (346)
.+++++|...++|+|+++|+++++++||++++++|++ +..+.++.........+...+..+..+..+++..+++|..+
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCF 81 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEE
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEEEcCCCCEE
Confidence 5789999754469999999999999999999999998 45555555555666777778888888899999999999999
Q ss_pred EEEEEeeeeecCCCcc
Q 019110 330 WNLLHISPIRNASGKV 345 (346)
Q Consensus 330 ~~~~~~~~i~d~~G~v 345 (346)
|+.++..|+.+.+|++
T Consensus 82 ~~~~~~~~~~~~~g~~ 97 (110)
T 1byw_A 82 LCLVDVVPVKNEDGAV 97 (110)
T ss_dssp EEEEEEEEEECTTCCE
T ss_pred EEEEEEEEeecCCCCE
Confidence 9999999999988864
No 86
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=99.47 E-value=6.9e-13 Score=95.26 Aligned_cols=106 Identities=16% Similarity=0.219 Sum_probs=78.7
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhC------------CCchhhcCCCCCcccCCCCChhhHHHHHH
Q 019110 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSG------------FSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84 (346)
Q Consensus 17 ~~~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G------------~~~~e~~g~~~~~~~~~~~~~~~~~~~~~ 84 (346)
..+++.+++++++|++++|.+ |+|+++|+++++++| |++++++|+++..+.+. +.....+.+
T Consensus 4 ~~rl~~il~~~~~gviv~D~~---g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~~---~~~~~~~~~ 77 (121)
T 4hi4_A 4 MARIASALDNVSANVMIADND---LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKN---PAHQRHLLA 77 (121)
T ss_dssp HHHHHHHHTTSSSEEEEEETT---CBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCSS---HHHHHHHHH
T ss_pred HHHHHHHHhcCCccEEEEcCC---CeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcCC---HHHHHHHHh
Confidence 357889999999999999997 999999999999995 89999999997776642 122222222
Q ss_pred HHhcCCceEEEEEeeeCCCCeEEEEeeecccccCCCCceeEEEEEeeccccc
Q 019110 85 AIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (346)
Q Consensus 85 ~~~~~~~~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~ 136 (346)
... ..+..++. .+|. ++.++.+|+++ .+|.+.|++++++|||++
T Consensus 78 ~~~--~~~~~~~~---~~~~--~~~~~~~pi~~-~~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 78 NLT--GVHKAELN---LGGR--RFSLDVVPVFN-DANARLGSAVQWTDRTEE 121 (121)
T ss_dssp HCS--SCEEEEEE---ETTE--EEEEEEEEEEC-TTSCEEEEEEEEEECC--
T ss_pred CcC--CCcEEEEE---ECCE--EEEEEEEEEEC-CCCCEEEEEEEEEEecCC
Confidence 221 23333332 2443 56789999999 899999999999999974
No 87
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.46 E-value=1.2e-12 Score=96.29 Aligned_cols=102 Identities=45% Similarity=0.953 Sum_probs=90.8
Q ss_pred HHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCceEEEEEeEe
Q 019110 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYR 323 (346)
Q Consensus 244 ~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 323 (346)
..++++++++++++|...++|+++++|+++++++||++++++|+++..+.++.+.......+...+..+.++..+++..+
T Consensus 5 ~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (146)
T 2v0u_A 5 ATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQLINYT 84 (146)
T ss_dssp CCTGGGSSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred HHHHhcCCCcEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCcceEEEEEe
Confidence 34688999999999973335899999999999999999999999998888888887878888888888999999999999
Q ss_pred cCCCeEEEEEEeeeeecCCCcc
Q 019110 324 KDKSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 324 ~dG~~~~~~~~~~~i~d~~G~v 345 (346)
++|..+|+.++..|+.+.+|.+
T Consensus 85 ~~g~~~~~~~~~~~~~~~~g~~ 106 (146)
T 2v0u_A 85 KSGKKFWNLFHLQPMRDQKGDV 106 (146)
T ss_dssp TTCCEEEEEEEEEEEECTTSCE
T ss_pred cCCcEEEEEEEEEEeECCCCCE
Confidence 9999999999999999988864
No 88
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=99.44 E-value=2.3e-12 Score=93.90 Aligned_cols=105 Identities=29% Similarity=0.567 Sum_probs=88.5
Q ss_pred HHHHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCC--ccccccCCcchhHHHHHHHHHhcCCceEEE
Q 019110 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQN--CRFLNGVDTDTTVLYQIKESIQTEQACTVR 318 (346)
Q Consensus 241 ~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 318 (346)
..+...+++++++++++|...++|+|+++|+++++++||+.++++|++ +..+.++.........+...+..+..+..+
T Consensus 19 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (138)
T 2l0w_A 19 DTIIRKFEGQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEERKVE 98 (138)
T ss_dssp HHHHHHHTTTTSEEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCEEEE
T ss_pred HHHHHHHhcCCCCEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCceeE
Confidence 345566777999999999743358999999999999999999999998 566666666666677777888888888899
Q ss_pred EEeEecCCCeEEEEEEeeeeecCCCcc
Q 019110 319 ILNYRKDKSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 319 ~~~~~~dG~~~~~~~~~~~i~d~~G~v 345 (346)
++..+++|..+|+.+++.|+.+.+|++
T Consensus 99 ~~~~~~~g~~~~~~~~~~~~~~~~g~~ 125 (138)
T 2l0w_A 99 IAFYRKDGSCFLCLVDVVPVKNEDGAV 125 (138)
T ss_dssp EEEECTTSCEEEEEEEEEEEECTTSCE
T ss_pred EEEECCCCCEEEEEEEEEEEeCCCCCE
Confidence 999999999999999999999988864
No 89
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=99.44 E-value=4.4e-13 Score=101.01 Aligned_cols=101 Identities=16% Similarity=0.149 Sum_probs=84.1
Q ss_pred hHHHHHHHhccCCcEEEEc-CCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCceEEE
Q 019110 240 SSSLYISLGRIKQSFVLID-PHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVR 318 (346)
Q Consensus 240 ~~~l~~~~~~~~~~i~~~d-~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 318 (346)
.+.|..+++++|++|+++| . +|+|+++|+++++++|++ +++|+++..++++.........+.+++..+.+...+
T Consensus 16 ~~~~~~~~~~~~~~i~~~d~~---~~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 90 (158)
T 3k3c_A 16 AEDVRRIFEHIPAILVGLEGP---DHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGS 90 (158)
T ss_dssp HHHHHHHHHHCSSEEEEEETT---TTEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHHHHHCCCEEEE
T ss_pred HHHHHHHHhcCCceEEEEECC---CcEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHHHHhCCccccc
Confidence 4468899999999999999 8 999999999999999999 899999888888777767777888888778775544
Q ss_pred -EEe--Eec-C-CCeEEEEEEeeeeecCCCcc
Q 019110 319 -ILN--YRK-D-KSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 319 -~~~--~~~-d-G~~~~~~~~~~~i~d~~G~v 345 (346)
... .++ + |..+|+.++.+|+++.+|++
T Consensus 91 ~~~~~~~~~~~~g~~~~~~~~~~pi~~~~g~~ 122 (158)
T 3k3c_A 91 EWRLQTDYDGSGVEERYFDFVVTPRRRADGSI 122 (158)
T ss_dssp EEEEEEESSSSCEEEEEEEEEEEEEECTTSCE
T ss_pred ceeEEeccCCCCcceEEEEEEEEEeECCCCCE
Confidence 322 222 3 77899999999999999975
No 90
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=99.42 E-value=9.8e-14 Score=98.52 Aligned_cols=91 Identities=12% Similarity=0.193 Sum_probs=69.0
Q ss_pred ccCCcEEEEcCCCCC-CCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHH-HHhc-CCce---EEEEEeE
Q 019110 249 RIKQSFVLIDPHLPD-MPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKE-SIQT-EQAC---TVRILNY 322 (346)
Q Consensus 249 ~~~~~i~~~d~~~~d-g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~-~~~~-~~~~---~~e~~~~ 322 (346)
+.+++|+++|. + |+|+++|+++++++||+++|++|+++..++++.+... ...+.. .+.. +... ..+++.+
T Consensus 6 ~~~~~i~~~d~---~~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (114)
T 1ll8_A 6 EFNKAIFTVDA---KTTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDV-VEALSEEHMEADGHAAVVFGTVVDII 81 (114)
T ss_dssp TTTCEEEEEET---TTCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHH-HHHTTSSTTSSSSCSSCCCSSSEEEC
T ss_pred CCCceEEEEEC---CCCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHH-HHHHHHHhhccCCcceeccCcEEEEE
Confidence 34579999999 8 9999999999999999999999999988887764332 222222 1122 2211 3457788
Q ss_pred ecCCCeEEEEEEeeeeecCCC
Q 019110 323 RKDKSSFWNLLHISPIRNASG 343 (346)
Q Consensus 323 ~~dG~~~~~~~~~~~i~d~~G 343 (346)
++||+.+|+.++++|+.+.++
T Consensus 82 ~~dG~~~~v~~~~~~~~~~~~ 102 (114)
T 1ll8_A 82 SRSGEKIPVSVWMKRMRQERR 102 (114)
T ss_dssp CTTCCCEEEECCEECCBSSSS
T ss_pred ecCCCEEEEEEEEEeeccCCc
Confidence 999999999999999987654
No 91
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.40 E-value=1.2e-12 Score=94.29 Aligned_cols=93 Identities=15% Similarity=0.140 Sum_probs=80.0
Q ss_pred HHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCceEEEEEeEec
Q 019110 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRK 324 (346)
Q Consensus 245 ~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 324 (346)
.++++++++++++|. +|+|+++|+++++++||++++++|+++..++++.+.......+...+.++.. ..++++.++
T Consensus 3 ~l~~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 78 (126)
T 3mjq_A 3 NFLETIEDMILIINR---EGRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKE-SLPLSLEKK 78 (126)
T ss_dssp TTGGGCSSEEEEEET---TSBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCCS-EEEEEEECT
T ss_pred hHHhhCCceEEEEeC---CCcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCCCc-eeEEEEEcc
Confidence 468899999999999 9999999999999999999999999988888888777666666666655554 788889999
Q ss_pred CCCeEEEEEEeeeeecC
Q 019110 325 DKSSFWNLLHISPIRNA 341 (346)
Q Consensus 325 dG~~~~~~~~~~~i~d~ 341 (346)
+|..+|+.++..|+.+.
T Consensus 79 ~g~~~~~~~~~~~~~~~ 95 (126)
T 3mjq_A 79 EGTSIPAKARIWQGKWH 95 (126)
T ss_dssp TSCEEEEEEEEEEEESS
T ss_pred CCCEEEEEEEEEeeeEC
Confidence 99999999999877653
No 92
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=99.38 E-value=1.7e-12 Score=100.63 Aligned_cols=101 Identities=16% Similarity=0.148 Sum_probs=82.0
Q ss_pred hHHHHHHHhccCCcEEEEc-CCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCceEEE
Q 019110 240 SSSLYISLGRIKQSFVLID-PHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVR 318 (346)
Q Consensus 240 ~~~l~~~~~~~~~~i~~~d-~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 318 (346)
.+.+..+++++|++|+++| . +|+|+++|+++++++||+ +++|+++.+++++.........+..++..+.+...+
T Consensus 36 ~~~l~~l~~~~~~~i~~~d~~---~g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 110 (185)
T 3kx0_X 36 AEDVRRIFEHIPAILVGLEGP---DHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGS 110 (185)
T ss_dssp HHHHHHHHHHCSSEEEEEETT---TTEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSSSHHHHHHHHHHCCCEEEE
T ss_pred HHHHHHHHhcCCceEEEEECC---CcEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhhHHHHHHHHHHcCCccccc
Confidence 4568899999999999999 8 999999999999999999 999999888887777666677777888778776554
Q ss_pred -EEe--EecC--CCeEEEEEEeeeeecCCCcc
Q 019110 319 -ILN--YRKD--KSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 319 -~~~--~~~d--G~~~~~~~~~~~i~d~~G~v 345 (346)
... .+++ |..+|+.++..|++|.+|.+
T Consensus 111 ~~~~~~~~~~~gg~~~~~~~~~~pi~~~~g~~ 142 (185)
T 3kx0_X 111 EWRLQTDYDGSGVEERYFDFVVTPRRRADGSI 142 (185)
T ss_dssp EEEEC--------CCEEEEEEEEEEECTTSCE
T ss_pred ceeEEeeccCCCCccEEEEEEEEEEECCCCCE
Confidence 333 2223 78899999999999999875
No 93
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.37 E-value=2.4e-12 Score=91.34 Aligned_cols=94 Identities=17% Similarity=0.140 Sum_probs=74.9
Q ss_pred HHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCce-EEEEEe
Q 019110 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC-TVRILN 321 (346)
Q Consensus 243 l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~ 321 (346)
...++++++++++++|. +|+|+++|+++++++|+++++++|+++..+.++... ....+.+.+..+.+. ..+..+
T Consensus 9 ~~~il~~~~~~i~~~D~---~g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 83 (115)
T 3b33_A 9 PSAILNNMVTATLILDD---GLAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASL--DLALLTQPLQSGQSITDSDVTF 83 (115)
T ss_dssp HHHHHHHCSSEEEEECT---TCBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEEC--CTHHHHHHHHHCCCEEEEEEEE
T ss_pred HHHHHhhcCceEEEECC---CCcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccch--hhHHHHHHHHcCCcccCCceEE
Confidence 45689999999999999 999999999999999999999999998777654321 223344555556553 456666
Q ss_pred EecCCCeEEEEEEeeeeecCCC
Q 019110 322 YRKDKSSFWNLLHISPIRNASG 343 (346)
Q Consensus 322 ~~~dG~~~~~~~~~~~i~d~~G 343 (346)
. ++|..+|+.++++|+.+ +|
T Consensus 84 ~-~~g~~~~~~~~~~pi~~-~g 103 (115)
T 3b33_A 84 V-VDGRPLMLEVTVSPITW-QR 103 (115)
T ss_dssp E-ETTEEEEEEEEEEEEEE-TT
T ss_pred e-cCCCEEEEEEEEEEeec-CC
Confidence 6 89999999999999998 77
No 94
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.36 E-value=3.4e-12 Score=90.48 Aligned_cols=106 Identities=12% Similarity=0.122 Sum_probs=81.6
Q ss_pred HHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCce-EEEEEe
Q 019110 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI-EVNLLN 98 (346)
Q Consensus 20 ~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~ 98 (346)
...++++++++++++|.+ |+|+++|+++++++|++.++++|+++..+.++... ....+.+.+..+... ..+..+
T Consensus 9 ~~~il~~~~~~i~~~D~~---g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 83 (115)
T 3b33_A 9 PSAILNNMVTATLILDDG---LAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASL--DLALLTQPLQSGQSITDSDVTF 83 (115)
T ss_dssp HHHHHHHCSSEEEEECTT---CBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEEC--CTHHHHHHHHHCCCEEEEEEEE
T ss_pred HHHHHhhcCceEEEECCC---CcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccch--hhHHHHHHHHcCCcccCCceEE
Confidence 456899999999999997 99999999999999999999999987666543221 223344555555543 455565
Q ss_pred eeCCCCeEEEEeeecccccCCCCceeEEEEEeeccc
Q 019110 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (346)
Q Consensus 99 ~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (346)
. ++|..+|+.++..|+.+ +|. .+++.+++||+
T Consensus 84 ~-~~g~~~~~~~~~~pi~~--~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 84 V-VDGRPLMLEVTVSPITW--QRQ-LMLLVEMRKID 115 (115)
T ss_dssp E-ETTEEEEEEEEEEEEEE--TTE-EEEEEEEEEC-
T ss_pred e-cCCCEEEEEEEEEEeec--CCc-eEEEEEEEeCC
Confidence 5 78999999999999976 454 58899999985
No 95
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=99.35 E-value=1.2e-11 Score=104.15 Aligned_cols=108 Identities=9% Similarity=0.037 Sum_probs=92.3
Q ss_pred CCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCc-----eEEEEEeeeCC
Q 019110 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP-----IEVNLLNYKKD 102 (346)
Q Consensus 28 ~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~d 102 (346)
...++..+.+ |+++|+|+++..++||.++|++|+++..++||++.......+.+.+..|.. ...++|++++|
T Consensus 154 ~~fi~r~~~d---G~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~~~kd 230 (339)
T 3rty_A 154 PKFAIRHTAT---GIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQN 230 (339)
T ss_dssp CEEEEEEETT---CBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEEECTT
T ss_pred ceEEEEECCC---CeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHcCCcccccccceEEEEEccC
Confidence 4455666665 999999999999999999999999999999999988888888888876654 35689999999
Q ss_pred CCeEEEEeeecccccCCCCceeEEEEEeeccccccc
Q 019110 103 GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (346)
Q Consensus 103 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~k~ 138 (346)
|.++|++.+.+++++|..+.+..++++.+.|+....
T Consensus 231 G~~vWlet~~~~~~np~s~~~~~II~~h~vi~~p~~ 266 (339)
T 3rty_A 231 GCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQ 266 (339)
T ss_dssp SCEEEEEEEEEEEECTTTCSEEEEEEEEEEEECCSS
T ss_pred CCEEEEEEEEEEEECCCCCCeeEEEEEEEECCCCCC
Confidence 999999999999998556788889999988887654
No 96
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.34 E-value=5.1e-12 Score=95.74 Aligned_cols=104 Identities=25% Similarity=0.336 Sum_probs=80.5
Q ss_pred cchhHHHHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCc--
Q 019110 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA-- 314 (346)
Q Consensus 237 ~~~~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-- 314 (346)
......+..++++++++++++|. +|.++++|+++++++||+.++++|+++..++++.+.......+......+..
T Consensus 36 ~~~~~~~~~~l~~~~~~i~~~d~---~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (167)
T 1v9y_A 36 NAADGIFFPALEQNMMGAVLINE---NDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARV 112 (167)
T ss_dssp ----CCHHHHHHTCSSEEEEECT---TSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC------
T ss_pred hhhhHHHHHHHHhCCCCEEEECC---CCcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHHHhhcCCCcc
Confidence 34455688999999999999999 9999999999999999999999999988887777666555555555554433
Q ss_pred --eEEEEEeEecCCCeEEEEEEeeeeecCCCc
Q 019110 315 --CTVRILNYRKDKSSFWNLLHISPIRNASGK 344 (346)
Q Consensus 315 --~~~e~~~~~~dG~~~~~~~~~~~i~d~~G~ 344 (346)
+..++++.+++|..+|+.++..|+ +.+|.
T Consensus 113 ~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~g~ 143 (167)
T 1v9y_A 113 EGMSRELQLEKKDGSKIWTRFALSKV-SAEGK 143 (167)
T ss_dssp ----CEEEEECTTSCEEEEEEEEEEE-EETTE
T ss_pred cccceEEEEEcCCCcEEEEEEEEEEE-ecCCC
Confidence 556888899999999999999999 44554
No 97
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=99.33 E-value=3.4e-12 Score=91.15 Aligned_cols=93 Identities=11% Similarity=0.068 Sum_probs=76.3
Q ss_pred HHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCceEEEEEeE
Q 019110 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322 (346)
Q Consensus 243 l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 322 (346)
...+++++|++|+++|. +|+|+++|+++++++|+++++++|+++..++++.........+.+++..+.+...++...
T Consensus 14 ~~~il~~~~~~i~~~D~---~g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (118)
T 3fg8_A 14 RENLYFQGGLGFMALDE---DLRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGREQQTRVDSL 90 (118)
T ss_dssp CCCSSSCTTCEEEEECT---TCBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHHHHCCCEEEEEECS
T ss_pred HHHHHhhCCceEEEECC---CCeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHHHHHcCCceEEEEEEE
Confidence 44568999999999999 999999999999999999999999998888876666666777888888888887754444
Q ss_pred ecCCCeEEEEEEeeeeec
Q 019110 323 RKDKSSFWNLLHISPIRN 340 (346)
Q Consensus 323 ~~dG~~~~~~~~~~~i~d 340 (346)
..+| +|+.+++.|+.+
T Consensus 91 ~~~g--~~~~~~~~p~~~ 106 (118)
T 3fg8_A 91 YSPG--MTIEVTAAADSG 106 (118)
T ss_dssp SSTT--CEEEEEEEEETT
T ss_pred cCCC--eEEEEEEEEcCC
Confidence 4466 677888888753
No 98
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=99.33 E-value=1.1e-12 Score=120.60 Aligned_cols=100 Identities=12% Similarity=0.091 Sum_probs=89.2
Q ss_pred HHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCceEEEEEeE
Q 019110 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322 (346)
Q Consensus 243 l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 322 (346)
+..++++++++|+++|. +|+|+++|++|++++||+++|++|++.....++++... ...+.+.+..++.+.+|++++
T Consensus 520 ~~~lle~a~~~i~~~D~---~grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~~-~~~i~~~l~~g~~~~~E~~~~ 595 (635)
T 4eho_A 520 ASSQVHASMQPVLITDA---EGRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESNDF-LRNVAELIDHGRGWRGEVLLR 595 (635)
T ss_dssp HHHHHHHCSSCCEEEET---TCCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTHH-HHHHHHHHHHCCCBCCCCEEC
T ss_pred HHHHHHhCCCcEEEECC---CCeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHHH-HHHHHHHHHcCCcEEEEEEEE
Confidence 45678999999999999 99999999999999999999999998777777776654 456667788888999999999
Q ss_pred ecCCCeEEEEEEeeeeecCCCccC
Q 019110 323 RKDKSSFWNLLHISPIRNASGKVL 346 (346)
Q Consensus 323 ~~dG~~~~~~~~~~~i~d~~G~v~ 346 (346)
++||+.+|+.+++.|++|.+|+++
T Consensus 596 ~~dG~~~~~~~~~~pv~d~~G~v~ 619 (635)
T 4eho_A 596 GAGNRPLPLAVRADPVTRTEDQSL 619 (635)
T ss_dssp CSSSSCEECCCCEEEECSTTSSCC
T ss_pred ccCCcEEEEEEEEEEEECCCCCEE
Confidence 999999999999999999999874
No 99
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=99.32 E-value=2.2e-12 Score=91.38 Aligned_cols=103 Identities=16% Similarity=0.154 Sum_probs=74.6
Q ss_pred hCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHH-HHhc-CCce---EEEEEeee
Q 019110 26 ELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE-AIRE-ERPI---EVNLLNYK 100 (346)
Q Consensus 26 ~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~---~~e~~~~~ 100 (346)
+.+++++++|.+ +|+|+++|+++++++||++++++|+++..+.++..... ...+.. .... +... ..++...+
T Consensus 6 ~~~~~i~~~d~~--~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (114)
T 1ll8_A 6 EFNKAIFTVDAK--TTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDV-VEALSEEHMEADGHAAVVFGTVVDIIS 82 (114)
T ss_dssp TTTCEEEEEETT--TCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHH-HHHTTSSTTSSSSCSSCCCSSSEEECC
T ss_pred CCCceEEEEECC--CCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHH-HHHHHHHhhccCCcceeccCcEEEEEe
Confidence 455799999983 29999999999999999999999999888877654322 222211 1111 1111 23456778
Q ss_pred CCCCeEEEEeeecccccCCCCceeEEEEEeeccc
Q 019110 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (346)
Q Consensus 101 ~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (346)
+||+.+|+.++++|+.+ ..+ .+++++++|++
T Consensus 83 ~dG~~~~v~~~~~~~~~-~~~--~~~v~~~~~~~ 113 (114)
T 1ll8_A 83 RSGEKIPVSVWMKRMRQ-ERR--LCCVVVLEPVE 113 (114)
T ss_dssp TTCCCEEEECCEECCBS-SSS--BEEEEEEEECC
T ss_pred cCCCEEEEEEEEEeecc-CCc--cEEEEEEeecC
Confidence 99999999999999977 433 36788888876
No 100
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=99.32 E-value=1.6e-11 Score=86.34 Aligned_cols=95 Identities=15% Similarity=0.099 Sum_probs=75.5
Q ss_pred HHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCcccc-ccCCcchhHHHHHHHHHhcCCceEEEEEeE
Q 019110 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFL-NGVDTDTTVLYQIKESIQTEQACTVRILNY 322 (346)
Q Consensus 244 ~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 322 (346)
..++++++.|++++|. +|+|+++|+++++++||++++++|+++... .+......+...+.+.+..|. +..++.+.
T Consensus 20 ~~~ld~l~~Gii~lD~---~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~-l~~~~~~v 95 (125)
T 1nwz_A 20 DGQLDGLAFGAIQLDG---DGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGN-LNTMFEYT 95 (125)
T ss_dssp HHHHTTCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTC-CEEEEEEE
T ss_pred HHHHhccCceEEEECC---CCEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEE
Confidence 3468999999999999 999999999999999999999999998664 444566677788888887666 66666555
Q ss_pred -ecCCCeEEEEEEeeeeecCCCc
Q 019110 323 -RKDKSSFWNLLHISPIRNASGK 344 (346)
Q Consensus 323 -~~dG~~~~~~~~~~~i~d~~G~ 344 (346)
+++|+.. .+++++..+++|.
T Consensus 96 ~~~~~~p~--~v~i~l~~~~~~~ 116 (125)
T 1nwz_A 96 FDYQMTPT--KVKVHMKKALSGD 116 (125)
T ss_dssp ECTTSCCE--EEEEEEEECSSSS
T ss_pred EcCCCCEE--EEEEEEEEcCCCC
Confidence 8999954 5555666666664
No 101
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=99.31 E-value=3.4e-12 Score=91.79 Aligned_cols=95 Identities=12% Similarity=0.108 Sum_probs=66.0
Q ss_pred hhHHHHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCceEEE
Q 019110 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVR 318 (346)
Q Consensus 239 ~~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 318 (346)
.+..++.++++++++|+++|. +|+|+++|+++++++||++++++|+++..+++++...............+...
T Consensus 17 ~~~~~~~i~~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 90 (125)
T 3fc7_A 17 TRKKFESLVSDSPDGIVHLTT---NGTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLEAGKSAVENGTAT--- 90 (125)
T ss_dssp ---------CCSCCEEEEEET---TSBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHHHHHHHHHHHHHTSCE---
T ss_pred HHHHHHHHHhcCCCeEEEEcC---CCeEEEECHHHHHHhCCCHHHHcCccHHHhCCHHHHHHHHHHHHHHhcCCCeE---
Confidence 445688899999999999999 99999999999999999999999999888874333333333334445555433
Q ss_pred EEeEecCCC-eEEEEEEeeeeecCC
Q 019110 319 ILNYRKDKS-SFWNLLHISPIRNAS 342 (346)
Q Consensus 319 ~~~~~~dG~-~~~~~~~~~~i~d~~ 342 (346)
..++|. .+|+.++++|+.+..
T Consensus 91 ---~~~~~~~~~~~~~~~~p~~~~~ 112 (125)
T 3fc7_A 91 ---RSEDAVGGRHYHNQYIPVDSHR 112 (125)
T ss_dssp ---EEEEEETTEEEEEEEEESSTTT
T ss_pred ---EeEcCCCcEEEEEEEEeEecCC
Confidence 344566 889999999987653
No 102
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=99.31 E-value=2.2e-11 Score=85.72 Aligned_cols=93 Identities=9% Similarity=0.016 Sum_probs=74.5
Q ss_pred HHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCcccc-ccCCcchhHHHHHHHHHhcCCceEEEEEeE-e
Q 019110 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFL-NGVDTDTTVLYQIKESIQTEQACTVRILNY-R 323 (346)
Q Consensus 246 ~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~ 323 (346)
++++++.|++++|. +|+|+++|.++++++||++++++|+++... .+......+...+.+.+..|. +..++.+. +
T Consensus 27 ~ld~l~~GiivlD~---dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~~G~-l~~~~~yv~~ 102 (129)
T 1mzu_A 27 EFDALPVGAIQVDG---SGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGT-LDARFDFVFD 102 (129)
T ss_dssp TGGGCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSC-CEEEEEEEEE
T ss_pred HHhccCceEEEECC---CCeEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEEEc
Confidence 58999999999999 999999999999999999999999998664 444566677888888888655 66666555 8
Q ss_pred cCCCeEEEEEEeeeeecCCCc
Q 019110 324 KDKSSFWNLLHISPIRNASGK 344 (346)
Q Consensus 324 ~dG~~~~~~~~~~~i~d~~G~ 344 (346)
++|+.+ .++++...+++|.
T Consensus 103 ~~~~p~--~v~i~l~~~~~~~ 121 (129)
T 1mzu_A 103 FQMAPV--RVQIRMQNAGVPD 121 (129)
T ss_dssp CSSCEE--EEEEEEEECSSTT
T ss_pred CCCCEE--EEEEEEEEcCCCC
Confidence 999954 5555666666664
No 103
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=99.29 E-value=2.1e-11 Score=104.68 Aligned_cols=117 Identities=18% Similarity=0.268 Sum_probs=93.2
Q ss_pred hHHHHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceEEE
Q 019110 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (346)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (346)
..+.+..+++++++||+++|.+ |+|+++|++ ++++ ++.++++|+++..++++.. ......+...+.+|.....+
T Consensus 237 ~~~~l~~IL~~l~dgIivvD~~---g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~~~-~~~~~~l~~~l~~g~~~~~~ 310 (369)
T 3cax_A 237 NIEELKAIFEALPVDVTFIDKD---DRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPPKS-VYVVNKILKAFKEGRKKEAT 310 (369)
T ss_dssp CHHHHHHHHHHSSSEEEEECTT---SBEEEECCS-SCSS-CCCGGGTTCBTTTSSCGGG-HHHHHHHHHHHHHTSCSCEE
T ss_pred hHHHHHHHHHhCCCcEEEECCC---CcEEEEcCH-HHcc-CChHHHcCCcHHHHCChhh-HHHHHHHHHHHHcCCceEEE
Confidence 4567889999999999999997 999999999 9999 8999999999887765432 22334456667767655444
Q ss_pred EEeeeCCCCeEEEEeeecccccCCCCceeEEEEEeeccccccccccc
Q 019110 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142 (346)
Q Consensus 96 ~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~k~~~~~ 142 (346)
.... .+| +++.++..|+++ .+|.+.|++.+++|||+.++.++.
T Consensus 311 ~~~~-~~g--~~v~v~~~PI~d-~~G~~~G~v~v~~DITe~~~le~~ 353 (369)
T 3cax_A 311 FWLR-LRE--KYVYIKYVPLFN-EKGEYIGTLEMTMDIAPYKKIEGE 353 (369)
T ss_dssp EEEE-ETT--EEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHTCCSC
T ss_pred EEEe-eCC--EEEEEEEEEEEC-CCCCEEEEEEEEEcCHHHHHHHHH
Confidence 4433 355 578899999999 899999999999999999988444
No 104
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=99.26 E-value=4.7e-12 Score=89.90 Aligned_cols=104 Identities=9% Similarity=0.095 Sum_probs=79.7
Q ss_pred hhHHHHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCC---CchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCc
Q 019110 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGF---SRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91 (346)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~---~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (346)
+..+.++.+++++|++++++|.+ |+|+++|+++++++|| +.++++|+++..+.++.. +...+..+..
T Consensus 12 ~~~~~~~~il~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~ 81 (118)
T 2w0n_A 12 TLFEQRQAMLQSIKEGVVAVDDR---GEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVD-------VSEVLRDGTP 81 (118)
T ss_dssp TTHHHHHHHHHCCCCCCEEEBTT---TBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTHH-------HHHHHHTTCC
T ss_pred HHHHHHHHHHhhccccEEEECCC---CcEeehhHHHHHHhCCCccChhhhhccCcccccCchh-------HHHHhccCce
Confidence 56677899999999999999997 9999999999999997 789999998877665431 3344444443
Q ss_pred eEEEEEeeeCCCCeEEEEeeecccccCCCCceeEEEEEeeccc
Q 019110 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (346)
Q Consensus 92 ~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (346)
.... ....+| .|+.++..|+.+ +|.+.|++++++|||
T Consensus 82 ~~~~--~~~~~~--~~~~~~~~p~~~--~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 82 RRDE--EITIKD--RLLLINTVPVRS--NGVIIGAISTFRDKT 118 (118)
T ss_dssp CCCC--CEESSS--CEECCCEECCCC--SSCCCCEEECCCCCC
T ss_pred eccE--EEEECC--EEEEEeeceeee--CCEEEEEEEEEEeCC
Confidence 2111 123355 477888899876 678888999999997
No 105
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.24 E-value=6.1e-12 Score=107.84 Aligned_cols=118 Identities=8% Similarity=0.075 Sum_probs=87.2
Q ss_pred hhHHHHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceEE
Q 019110 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (346)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (346)
+++++++.+++++|++++++|.+ |+|+++|+++++++||++++++|+++..+..+ ..........+..+.+...
T Consensus 5 ~~~~~~~~i~~~~~~~i~~~d~~---g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 78 (349)
T 3a0r_A 5 HLRNFSESILESLETAIITLSKD---GRITEWNKKAEQLFGLKKENVLGRRLKDLPDF---EEIGSVAESVFENKEPVFL 78 (349)
T ss_dssp ----CCCSSGGGSSSEEEEEESS---SBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTT---THHHHHHHHHHHHCCCCEE
T ss_pred HHHHHHHHHHhhhcCeEEEECCC---CCEEeeHHHHHHHhCCCHHHHcCcCHHHCcCh---hHHHHHHHHHHhcCCceee
Confidence 44556778999999999999997 99999999999999999999999998777332 2233344455555554433
Q ss_pred EEEeeeCCCCeEEEEeeecccccCCCCce-eEEEEEeecccccccccccc
Q 019110 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRA-THFVAVQVPIVSRKHMRNSG 143 (346)
Q Consensus 95 e~~~~~~dg~~~~~~~~~~~~~~~~~g~~-~~~~~~~~DIT~~k~~~~~~ 143 (346)
.. ..+..+|+.++..|+.+ ..|.. .+++++++|||+++++++++
T Consensus 79 ~~----~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~DiTe~~~~e~~~ 123 (349)
T 3a0r_A 79 NF----YKFGERYFNIRFSPFRN-AKTQLLEGVIITIDDVTELYKYEEER 123 (349)
T ss_dssp EC----CCBTTBCCEEEEEEECC-TTTTSSCEEEEEEECCSTTTTTTTTT
T ss_pred cc----cccCceEEEEEEEEEEc-CCCceeeEEEEEEEechHHHHHHHHH
Confidence 21 22234578889999988 66665 58999999999999986554
No 106
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=99.22 E-value=8.7e-11 Score=84.10 Aligned_cols=92 Identities=12% Similarity=0.263 Sum_probs=68.3
Q ss_pred HHHHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcC------------CChhhhhcCCccccccCCcchhHHHHHHHH
Q 019110 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG------------YDRNEVVGQNCRFLNGVDTDTTVLYQIKES 308 (346)
Q Consensus 241 ~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G------------~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~ 308 (346)
.++..++++++++|+++|. +|+|+++|+++++++| |++++++|+++..+.+. +.....+.+.
T Consensus 5 ~rl~~il~~~~~gviv~D~---~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~~---~~~~~~~~~~ 78 (121)
T 4hi4_A 5 ARIASALDNVSANVMIADN---DLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKN---PAHQRHLLAN 78 (121)
T ss_dssp HHHHHHHTTSSSEEEEEET---TCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCSS---HHHHHHHHHH
T ss_pred HHHHHHHhcCCccEEEEcC---CCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcCC---HHHHHHHHhC
Confidence 4588899999999999999 9999999999999995 89999999998777532 1222223332
Q ss_pred HhcCCceEEEEEeEecCCCeEEEEEEeeeeecCCCcc
Q 019110 309 IQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 309 ~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~G~v 345 (346)
.. ..+..++. .+|. ++.++++|++|.+|++
T Consensus 79 ~~--~~~~~~~~---~~~~--~~~~~~~pi~~~~g~~ 108 (121)
T 4hi4_A 79 LT--GVHKAELN---LGGR--RFSLDVVPVFNDANAR 108 (121)
T ss_dssp CS--SCEEEEEE---ETTE--EEEEEEEEEECTTSCE
T ss_pred cC--CCcEEEEE---ECCE--EEEEEEEEEECCCCCE
Confidence 22 34444443 2443 5578999999988865
No 107
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=99.22 E-value=4.7e-11 Score=88.75 Aligned_cols=101 Identities=12% Similarity=0.142 Sum_probs=78.5
Q ss_pred hhHHHHHHHhccCCcEEEEcCCCCCCCeeeecHh---HHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCce
Q 019110 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDA---FLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315 (346)
Q Consensus 239 ~~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~---~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 315 (346)
....+..++++++++|+++|. +|+|+|+|++ +++++| ..++++|+++..++++. .......+...+..+...
T Consensus 17 ~~~~l~~IL~~~~~gI~~vD~---~g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~~~~~~-~~~~v~~i~~~l~~g~~~ 91 (151)
T 2qkp_A 17 SVEQANLILNHLPLEITFVNK---DDIFQYYNDSVPAAEMVFK-RTPSQVGRNVELCHPPK-VLDKVKKVFELLRNGQRD 91 (151)
T ss_dssp CHHHHHHHHHHSSSEEEEEET---TSBEEEECCCSCGGGCSSC-CCGGGTTSBGGGSSCHH-HHHHHHHHHHHHHTTSBS
T ss_pred cHHHHHHHHHhCCCceEEEcC---CCeEEEEeCCCchhhhhcC-CCHHHcCCCHHHhCCHH-HHHHHHHHHHHHHcCCcc
Confidence 445688999999999999999 9999999999 999999 56789999988775433 333345566777778877
Q ss_pred EEEEEeEecCCCeEEEEEEeeeeecCCCcc
Q 019110 316 TVRILNYRKDKSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 316 ~~e~~~~~~dG~~~~~~~~~~~i~d~~G~v 345 (346)
..++....++ ..+++.++..|++|++|++
T Consensus 92 ~~~~~~~~~~-~~~~v~v~~~Pi~d~~G~~ 120 (151)
T 2qkp_A 92 KVNMWFQSER-LGKFVYVTYAAVRDQAGDF 120 (151)
T ss_dssp EEEEEEEETT-TTEEEEEEEEEEECTTCCE
T ss_pred EEEEEEecCC-CCeEEEEEEEEEECCCCCE
Confidence 7776653332 2356789999999988875
No 108
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=99.19 E-value=3.4e-11 Score=93.70 Aligned_cols=108 Identities=14% Similarity=0.141 Sum_probs=80.5
Q ss_pred hhHHHHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCC--ce
Q 019110 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER--PI 92 (346)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 92 (346)
+....++.+++++++|++++|.+ |+|+++|+++++++|++.++++|+++..+.++... ...+..+. ..
T Consensus 77 ~~~~~l~~il~~~~~gvi~~D~~---g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~~~~ 146 (190)
T 2jhe_A 77 REHLALSALLEALPEPVLSVDMK---SKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNF-------LRWLESEPQDSH 146 (190)
T ss_dssp HHHHHHHHHHHHCSSCEEEECTT---CBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCCH-------HHHHHTCCCSCE
T ss_pred HHHHHHHHHHHhCCCcEEEEcCC---CCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCCH-------HHHHhcCCCCCc
Confidence 44567899999999999999997 99999999999999999999999998777654321 22333333 23
Q ss_pred EEEEEeeeCCCCeEEEEeeecccccCCCCc----eeEEEEEeeccccccc
Q 019110 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGR----ATHFVAVQVPIVSRKH 138 (346)
Q Consensus 93 ~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~----~~~~~~~~~DIT~~k~ 138 (346)
..++.. +|. ++.++..|+.+ .+|. +.|++.+++|||+.++
T Consensus 147 ~~~~~~---~g~--~~~~~~~pi~~-~~~~~~~~~~g~v~~~~DiTe~~~ 190 (190)
T 2jhe_A 147 NEHVVI---NGQ--NFLMEITPVYL-QDENDQHVLTGAVVMLRSTIRMGR 190 (190)
T ss_dssp EEEEEE---TTE--EEEEEEEEETT-TTEEEEEEEE-HHHHHHHHTTTCC
T ss_pred ceEEEE---CCe--EEEEEEEEEEe-cCCCCcceEEeEEEEEeccchhcC
Confidence 333322 664 45677889877 5665 7788889999999864
No 109
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=99.19 E-value=4.6e-10 Score=78.94 Aligned_cols=99 Identities=14% Similarity=0.101 Sum_probs=75.9
Q ss_pred HHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCc-ccCCCCChhhHHHHHHHHhcCCceEEEE-Ee
Q 019110 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM-FQGPRTNRRTIMEIREAIREERPIEVNL-LN 98 (346)
Q Consensus 21 ~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~ 98 (346)
..++++++.|++++|.+ |+|++||.+++++.||++++++|+++.. +.+......+...+.+.+..|. ..... ..
T Consensus 20 ~~~ld~l~~Gii~lD~~---g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~-l~~~~~~v 95 (125)
T 1nwz_A 20 DGQLDGLAFGAIQLDGD---GNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGN-LNTMFEYT 95 (125)
T ss_dssp HHHHTTCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTC-CEEEEEEE
T ss_pred HHHHhccCceEEEECCC---CEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEE
Confidence 45799999999999997 9999999999999999999999999865 4445566667778888888776 44333 34
Q ss_pred eeCCCCeEEEEeeecccccCCCCceeEE
Q 019110 99 YKKDGTPFWMLFKMSLVFGKEDGRATHF 126 (346)
Q Consensus 99 ~~~dg~~~~~~~~~~~~~~~~~g~~~~~ 126 (346)
.+.+|+.+++.++.. .+ ++|...++
T Consensus 96 ~~~~~~p~~v~i~l~--~~-~~~~~~~i 120 (125)
T 1nwz_A 96 FDYQMTPTKVKVHMK--KA-LSGDSYWV 120 (125)
T ss_dssp ECTTSCCEEEEEEEE--EC-SSSSEEEE
T ss_pred EcCCCCEEEEEEEEE--Ec-CCCCEEEE
Confidence 488898666555544 45 56665544
No 110
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=99.18 E-value=2.5e-10 Score=80.37 Aligned_cols=99 Identities=14% Similarity=0.074 Sum_probs=75.4
Q ss_pred HHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCc-ccCCCCChhhHHHHHHHHhcCCceEEEEE-e
Q 019110 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM-FQGPRTNRRTIMEIREAIREERPIEVNLL-N 98 (346)
Q Consensus 21 ~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~ 98 (346)
..++++++.|++++|.+ |+|++||.+++++.||++++++|+++.. +.+......+...+.+.+..|. ....+. .
T Consensus 25 ~~~ld~l~~GiivlD~d---g~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~~G~-l~~~~~yv 100 (129)
T 1mzu_A 25 TAEFDALPVGAIQVDGS---GVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGT-LDARFDFV 100 (129)
T ss_dssp CTTGGGCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSC-CEEEEEEE
T ss_pred HHHHhccCceEEEECCC---CeEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEE
Confidence 34699999999999997 9999999999999999999999999865 4445566667778888888776 443333 4
Q ss_pred eeCCCCeEEEEeeecccccCCCCceeEE
Q 019110 99 YKKDGTPFWMLFKMSLVFGKEDGRATHF 126 (346)
Q Consensus 99 ~~~dg~~~~~~~~~~~~~~~~~g~~~~~ 126 (346)
.+.+|+.+++.++ +..+ ++|...++
T Consensus 101 ~~~~~~p~~v~i~--l~~~-~~~~~~~i 125 (129)
T 1mzu_A 101 FDFQMAPVRVQIR--MQNA-GVPDRYWI 125 (129)
T ss_dssp EECSSCEEEEEEE--EEEC-SSTTEEEE
T ss_pred EcCCCCEEEEEEE--EEEc-CCCCEEEE
Confidence 4888886655554 4445 56765544
No 111
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=99.17 E-value=3e-10 Score=76.71 Aligned_cols=95 Identities=8% Similarity=0.076 Sum_probs=71.0
Q ss_pred CCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceEEEEEeeeCCCCeE
Q 019110 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (346)
Q Consensus 27 ~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~ 106 (346)
++++++++|.+ |+++++|+++++++|++.++++|++...+ +. .......+.+.+..+...... . .+|..+
T Consensus 1 ~~~~i~~~d~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~ 70 (96)
T 3a0s_A 1 METAIITLSKD---GRITEWNKKAEQLFGLKKENVLGRRLKDL--PD-FEEIGSVAESVFENKEPVFLN--F--YKFGER 70 (96)
T ss_dssp CCCEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGS--TT-CHHHHHHHHHHHHHTCCEEEE--E--EEETTE
T ss_pred CCceEEEEcCC---CCEeehhHHHHHHhCCCHHHhcCCCHHHC--cc-hHHHHHHHHHHhccCCeEEEE--E--EcCCcE
Confidence 47899999997 99999999999999999999999987766 22 233344555566656554322 2 234557
Q ss_pred EEEeeecccccCCCCc-eeEEEEEeec
Q 019110 107 WMLFKMSLVFGKEDGR-ATHFVAVQVP 132 (346)
Q Consensus 107 ~~~~~~~~~~~~~~g~-~~~~~~~~~D 132 (346)
|+.++..|+.+ .+|. +.+++++++|
T Consensus 71 ~~~~~~~p~~~-~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 71 YFNIRFSPFRN-AKTQLLEGVIITIDD 96 (96)
T ss_dssp EEEEEEEEEEC-TTTCCEEEEEEEEEC
T ss_pred EEEEEEEEeEc-CCCCeeeEEEEEecC
Confidence 89999999988 6554 6788888876
No 112
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=99.17 E-value=2.1e-10 Score=95.44 Aligned_cols=104 Identities=10% Similarity=0.078 Sum_probs=86.9
Q ss_pred EEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCc---eEEEEEeeeCCCCeEE
Q 019110 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP---IEVNLLNYKKDGTPFW 107 (346)
Q Consensus 31 i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~e~~~~~~dg~~~~ 107 (346)
+...+. ||+++|+|+++..++||.++|++|+++.++++|+|.......+.+.+..+.. ...++|++++||.++|
T Consensus 177 itrh~~---dG~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~vw 253 (317)
T 4dj3_A 177 TTTHTP---GCVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEYVI 253 (317)
T ss_dssp EEEECT---TSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCEEE
T ss_pred EEEecC---CCeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEccCCCEEE
Confidence 344444 5999999999999999999999999999999999988888888888886554 3578999999999999
Q ss_pred EEeeecccccCCCCceeEEEEEeecccccc
Q 019110 108 MLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (346)
Q Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~~~DIT~~k 137 (346)
++.+..++++|..+++..+++...-++...
T Consensus 254 vet~~~~~~np~s~~~e~II~~h~v~~~p~ 283 (317)
T 4dj3_A 254 LDSSWSSFVNPWSRKVSFIIGRHKVRTSPL 283 (317)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEECCCCS
T ss_pred EEEEEEEEECCCCCcccEEEEEEEeccCCC
Confidence 999999999844677777887777666554
No 113
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=99.15 E-value=2.6e-10 Score=77.06 Aligned_cols=85 Identities=14% Similarity=0.188 Sum_probs=64.4
Q ss_pred cCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCceEEEEEeEecCCCeE
Q 019110 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSF 329 (346)
Q Consensus 250 ~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~ 329 (346)
++++|+++|. +|+|+++|+++++++|+++++++|+++..+ +.. ......+.+.+..+..+..+ .++|..+
T Consensus 1 ~~~~i~~~d~---~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 70 (96)
T 3a0s_A 1 METAIITLSK---DGRITEWNKKAEQLFGLKKENVLGRRLKDL--PDF-EEIGSVAESVFENKEPVFLN----FYKFGER 70 (96)
T ss_dssp CCCEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBGGGS--TTC-HHHHHHHHHHHHHTCCEEEE----EEEETTE
T ss_pred CCceEEEEcC---CCCEeehhHHHHHHhCCCHHHhcCCCHHHC--cch-HHHHHHHHHHhccCCeEEEE----EEcCCcE
Confidence 4689999999 999999999999999999999999998777 332 23344455555556555322 2345667
Q ss_pred EEEEEeeeeecCCCc
Q 019110 330 WNLLHISPIRNASGK 344 (346)
Q Consensus 330 ~~~~~~~~i~d~~G~ 344 (346)
|+.++.+|+.+.+|.
T Consensus 71 ~~~~~~~p~~~~~~~ 85 (96)
T 3a0s_A 71 YFNIRFSPFRNAKTQ 85 (96)
T ss_dssp EEEEEEEEEECTTTC
T ss_pred EEEEEEEEeEcCCCC
Confidence 999999999987653
No 114
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=99.14 E-value=3e-10 Score=91.22 Aligned_cols=93 Identities=11% Similarity=0.229 Sum_probs=71.1
Q ss_pred hHHHHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHc------------CCChhhhhcCCccccccCCcchhHHHHHHH
Q 019110 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLT------------GYDRNEVVGQNCRFLNGVDTDTTVLYQIKE 307 (346)
Q Consensus 240 ~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~------------G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~ 307 (346)
..++..++++++++|+++|. +|+|+|+|++|++++ ||++++++|+++..+++. +.....+..
T Consensus 21 ~~~l~~iLd~~~~~vii~D~---~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~~---~~~~~~~~~ 94 (233)
T 3vol_A 21 MARIKSALDNVSANVMIADN---DLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKN---PAHQRHLLA 94 (233)
T ss_dssp HHHHHHHHTTSSSEEEEEET---TSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSSS---HHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEECC---CCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcCC---HHHHHHHHH
Confidence 34578899999999999999 999999999999998 899999999998877642 222333333
Q ss_pred HHhcCCceEEEEEeEecCCCeEEEEEEeeeeecCCCcc
Q 019110 308 SIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 308 ~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~G~v 345 (346)
.+. ..+..+++ .+| .|+.++++|++|++|++
T Consensus 95 ~~~--~~~~~~~~---~~g--~~~~~~~~Pi~d~~G~~ 125 (233)
T 3vol_A 95 NLT--GVHKAELN---LGG--RRFSLDVVPVFNDANER 125 (233)
T ss_dssp TCC--SCEEEEEE---ETT--EEEEEEEEEEECTTCCE
T ss_pred hcc--cceeEEEE---ECC--EEEEEEEEEEECCCCCE
Confidence 332 24555543 355 47789999999999975
No 115
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=99.09 E-value=6e-10 Score=92.46 Aligned_cols=104 Identities=9% Similarity=0.063 Sum_probs=87.8
Q ss_pred EEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCC-ceE-EEEEeeeCCCCeEEE
Q 019110 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER-PIE-VNLLNYKKDGTPFWM 108 (346)
Q Consensus 31 i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~e~~~~~~dg~~~~~ 108 (346)
+...+. ||+++|+|+++..++||.++|++|+++.++++|+|.......+.+.+..+. ... .++|++++||.++|+
T Consensus 168 itrh~~---dG~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vwv 244 (309)
T 3gdi_A 168 TTTHTP---NCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYITL 244 (309)
T ss_dssp EEEECT---TCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECTTSCEEEE
T ss_pred EEEecC---CCeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEEccCCCEEEE
Confidence 444455 599999999999999999999999999999999998888777888887544 455 589999999999999
Q ss_pred EeeecccccCCCCceeEEEEEeecccccc
Q 019110 109 LFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (346)
Q Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~DIT~~k 137 (346)
+...+++.+|..+++..+++...-++...
T Consensus 245 et~~~~~~np~s~~~e~ii~~h~v~~gp~ 273 (309)
T 3gdi_A 245 DTSWSSFINPWSRKISFIIGRHKVRVGPL 273 (309)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEEEEECCS
T ss_pred EEEEEEEECCCCCcccEEEEEEEEccCCC
Confidence 99999988845788888999888887754
No 116
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=99.09 E-value=4.2e-10 Score=93.81 Aligned_cols=104 Identities=9% Similarity=0.057 Sum_probs=87.5
Q ss_pred EEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhc-CCce-EEEEEeeeCCCCeEEE
Q 019110 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE-ERPI-EVNLLNYKKDGTPFWM 108 (346)
Q Consensus 31 i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~e~~~~~~dg~~~~~ 108 (346)
+...+. ||+++|+|+++..++||.++|++|+++.++++|+|.......+.+.+.. +... ..++|++++||.++|+
T Consensus 179 itrh~~---dG~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vwv 255 (320)
T 4dj2_A 179 TTRHTP---SCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYVTM 255 (320)
T ss_dssp EEEECT---TCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEECSSSCEEEE
T ss_pred EEEecC---CceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEEccCCCEEEE
Confidence 444455 5999999999999999999999999999999999988877777777774 4444 3589999999999999
Q ss_pred EeeecccccCCCCceeEEEEEeecccccc
Q 019110 109 LFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (346)
Q Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~DIT~~k 137 (346)
+...+++.+|-.+++..+++...-++...
T Consensus 256 et~~~~~~np~s~~~e~II~~h~v~~gp~ 284 (320)
T 4dj2_A 256 DTSWAGFVHPWSRKVAFVLGRHKVRTAPL 284 (320)
T ss_dssp ECEEEEEECTTTCSEEEEEEEEEESSCCS
T ss_pred EEEEEEEECCCCCCccEEEEEEEEccCCC
Confidence 99999998845788888999888887764
No 117
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=99.02 E-value=2.6e-10 Score=80.71 Aligned_cols=94 Identities=17% Similarity=0.189 Sum_probs=69.6
Q ss_pred cchhHHHHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCC---ChhhhhcCCccccccCCcchhHHHHHHHHHhcCC
Q 019110 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGY---DRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313 (346)
Q Consensus 237 ~~~~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~---~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~ 313 (346)
......+..++++++++++++|. +|+|+++|+++++++|| ++++++|+++..+.++.. +...+..+.
T Consensus 11 ~~~~~~~~~il~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~ 80 (118)
T 2w0n_A 11 STLFEQRQAMLQSIKEGVVAVDD---RGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVD-------VSEVLRDGT 80 (118)
T ss_dssp CTTHHHHHHHHHCCCCCCEEEBT---TTBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTHH-------HHHHHHTTC
T ss_pred HHHHHHHHHHHhhccccEEEECC---CCcEeehhHHHHHHhCCCccChhhhhccCcccccCchh-------HHHHhccCc
Confidence 34455688899999999999999 99999999999999998 889999999887765432 334444444
Q ss_pred ceEEEEEeEecCCCeEEEEEEeeeeecCCCcc
Q 019110 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 314 ~~~~e~~~~~~dG~~~~~~~~~~~i~d~~G~v 345 (346)
....+. ...+| +|+.++..|+.+ +|++
T Consensus 81 ~~~~~~--~~~~~--~~~~~~~~p~~~-~g~~ 107 (118)
T 2w0n_A 81 PRRDEE--ITIKD--RLLLINTVPVRS-NGVI 107 (118)
T ss_dssp CCCCCC--EESSS--CEECCCEECCCC-SSCC
T ss_pred eeccEE--EEECC--EEEEEeeceeee-CCEE
Confidence 432211 23455 577888999987 5653
No 118
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=98.90 E-value=5.6e-09 Score=89.55 Aligned_cols=100 Identities=12% Similarity=0.137 Sum_probs=80.1
Q ss_pred cchhHHHHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCceE
Q 019110 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACT 316 (346)
Q Consensus 237 ~~~~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 316 (346)
......+..+++++++||+++|. +|+|+++|++ ++++ +++++++|+++..++++. .......+...+.+|....
T Consensus 235 ~~~~~~l~~IL~~l~dgIivvD~---~g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~~-~~~~~~~l~~~l~~g~~~~ 308 (369)
T 3cax_A 235 YLNIEELKAIFEALPVDVTFIDK---DDRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPPK-SVYVVNKILKAFKEGRKKE 308 (369)
T ss_dssp EECHHHHHHHHHHSSSEEEEECT---TSBEEEECCS-SCSS-CCCGGGTTCBTTTSSCGG-GHHHHHHHHHHHHHTSCSC
T ss_pred hhhHHHHHHHHHhCCCcEEEECC---CCcEEEEcCH-HHcc-CChHHHcCCcHHHHCChh-hHHHHHHHHHHHHcCCceE
Confidence 45566799999999999999999 9999999999 9999 999999999988876543 3333455666777777766
Q ss_pred EEEEeEecCCCeEEEEEEeeeeecCCCcc
Q 019110 317 VRILNYRKDKSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 317 ~e~~~~~~dG~~~~~~~~~~~i~d~~G~v 345 (346)
.+.... ++| +++.++.+|++|.+|++
T Consensus 309 ~~~~~~-~~g--~~v~v~~~PI~d~~G~~ 334 (369)
T 3cax_A 309 ATFWLR-LRE--KYVYIKYVPLFNEKGEY 334 (369)
T ss_dssp EEEEEE-ETT--EEEEEEEEEEECTTSCE
T ss_pred EEEEEe-eCC--EEEEEEEEEEECCCCCE
Confidence 665543 456 58889999999999875
No 119
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=98.85 E-value=3e-08 Score=76.81 Aligned_cols=92 Identities=13% Similarity=0.068 Sum_probs=68.6
Q ss_pred cchhHHHHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCC--c
Q 019110 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ--A 314 (346)
Q Consensus 237 ~~~~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~--~ 314 (346)
......+..+++++++||+++|. +|+|+++|+++++++|++.++++|+++..+.++.... ..+..+. .
T Consensus 76 ~~~~~~l~~il~~~~~gvi~~D~---~g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~~~ 145 (190)
T 2jhe_A 76 EREHLALSALLEALPEPVLSVDM---KSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFL-------RWLESEPQDS 145 (190)
T ss_dssp THHHHHHHHHHHHCSSCEEEECT---TCBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCCHH-------HHHHTCCCSC
T ss_pred HHHHHHHHHHHHhCCCcEEEEcC---CCCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCCHH-------HHHhcCCCCC
Confidence 34456788999999999999999 9999999999999999999999999988887654321 2233332 2
Q ss_pred eEEEEEeEecCCCeEEEEEEeeeeecCCC
Q 019110 315 CTVRILNYRKDKSSFWNLLHISPIRNASG 343 (346)
Q Consensus 315 ~~~e~~~~~~dG~~~~~~~~~~~i~d~~G 343 (346)
...++.. +|. ++.++++|+.+++|
T Consensus 146 ~~~~~~~---~g~--~~~~~~~pi~~~~~ 169 (190)
T 2jhe_A 146 HNEHVVI---NGQ--NFLMEITPVYLQDE 169 (190)
T ss_dssp EEEEEEE---TTE--EEEEEEEEETTTTE
T ss_pred cceEEEE---CCe--EEEEEEEEEEecCC
Confidence 3334433 664 45678899987554
No 120
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=98.82 E-value=3e-09 Score=90.98 Aligned_cols=94 Identities=13% Similarity=0.151 Sum_probs=70.1
Q ss_pred HHHHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCceEEEEE
Q 019110 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320 (346)
Q Consensus 241 ~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 320 (346)
..++.++++++++|+++|. +|+|+++|+++++++||++++++|+++..+.++.+ ........+..+.+...+
T Consensus 8 ~~~~~i~~~~~~~i~~~d~---~g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-- 79 (349)
T 3a0r_A 8 NFSESILESLETAIITLSK---DGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFEE---IGSVAESVFENKEPVFLN-- 79 (349)
T ss_dssp -CCCSSGGGSSSEEEEEES---SSBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTTTH---HHHHHHHHHHHCCCCEEE--
T ss_pred HHHHHHHhhhcCeEEEECC---CCCEEeeHHHHHHHhCCCHHHHcCcCHHHCcChhH---HHHHHHHHHhcCCceeec--
Confidence 3456679999999999999 99999999999999999999999999887743332 233344455555554332
Q ss_pred eEecCCCeEEEEEEeeeeecCCCc
Q 019110 321 NYRKDKSSFWNLLHISPIRNASGK 344 (346)
Q Consensus 321 ~~~~dG~~~~~~~~~~~i~d~~G~ 344 (346)
...+..+|+.++.+|+.+.+|.
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~~~ 101 (349)
T 3a0r_A 80 --FYKFGERYFNIRFSPFRNAKTQ 101 (349)
T ss_dssp --CCCBTTBCCEEEEEEECCTTTT
T ss_pred --ccccCceEEEEEEEEEEcCCCc
Confidence 2233456888999999988765
No 121
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=98.65 E-value=4.6e-08 Score=68.35 Aligned_cols=85 Identities=7% Similarity=-0.061 Sum_probs=73.2
Q ss_pred cEEEEcCCCCCCCeeeecHhHHHHcCCCh--hhhhcCCccccccCCcch--hHHHHHHHHHhcCCceEEEEEeEecCCCe
Q 019110 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDR--NEVVGQNCRFLNGVDTDT--TVLYQIKESIQTEQACTVRILNYRKDKSS 328 (346)
Q Consensus 253 ~i~~~d~~~~dg~i~~~N~~~~~l~G~~~--~e~~g~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~e~~~~~~dG~~ 328 (346)
-+.-.|. ||+|++|..+..+ .+|.+ +|++|+.+.+++|++|.. ...+...+++..|.....-+|++.|+|.+
T Consensus 9 F~sRh~~---dGKf~~vDq~~~r-~~~~~g~qdLlGrsiy~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr~k~g~~ 84 (132)
T 1oj5_A 9 FMTKQDT---TGKIISIDTSSLR-AAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTM 84 (132)
T ss_dssp EEEEECT---TCCEEEEECHHHH-TTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCE
T ss_pred eEEeecC---CCcEEEEeccccc-ccccccHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHcCCccccceEEEecCCcE
Confidence 4455677 9999999999874 77888 999999999999999965 77888888888888888889999999999
Q ss_pred EEEEEEeeeeecC
Q 019110 329 FWNLLHISPIRNA 341 (346)
Q Consensus 329 ~~~~~~~~~i~d~ 341 (346)
.|+......++++
T Consensus 85 V~~qT~sk~f~np 97 (132)
T 1oj5_A 85 LSAHTRCKLCYPQ 97 (132)
T ss_dssp EEEEEEEEEECC-
T ss_pred EEEEEEEEEecCC
Confidence 9999999888875
No 122
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=98.07 E-value=3.5e-09 Score=88.22 Aligned_cols=87 Identities=20% Similarity=0.116 Sum_probs=57.0
Q ss_pred HHhccCCcEEEEcCCCCCCCeeeecHhHHHHcC---CChhhhhcCCccccccCC---cch--hHHHHHHHHHhc-CCceE
Q 019110 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG---YDRNEVVGQNCRFLNGVD---TDT--TVLYQIKESIQT-EQACT 316 (346)
Q Consensus 246 ~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G---~~~~e~~g~~~~~l~~~~---~~~--~~~~~~~~~~~~-~~~~~ 316 (346)
+++++++||+++|. +|+|+++|+++++++| ++ ++++|+++..+.+.. ... .+...+...+.+ +..+.
T Consensus 175 ~~~~~~dGIivvD~---~G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~ 250 (305)
T 2ykf_A 175 SSPRAGDGFIRLDV---DGVVSYASPNALSAYHRMGLT-TELEGVNLIDATRPLISDPFEAHEVDEHVQDLLAGDGKGMR 250 (305)
Confidence 46788999999999 9999999999999985 54 789999988776432 100 122222223333 33333
Q ss_pred EEEEeEecCCCeEEEEEEeeeeecC
Q 019110 317 VRILNYRKDKSSFWNLLHISPIRNA 341 (346)
Q Consensus 317 ~e~~~~~~dG~~~~~~~~~~~i~d~ 341 (346)
.++.. . .+++.++..|+.+.
T Consensus 251 ~ei~~---~--~~~l~v~~~Pi~~~ 270 (305)
T 2ykf_A 251 MEVDA---G--GATVLLRTLPLVVA 270 (305)
Confidence 33221 2 35667888898863
No 123
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=98.06 E-value=3.9e-09 Score=87.88 Aligned_cols=109 Identities=14% Similarity=0.099 Sum_probs=75.2
Q ss_pred HhhCCCcEEEecCCCCCCCEEEEehhHHhhhC---CCchhhcCCCCCcccCCC---CCh--hhHHHHHHHHhc-CCceEE
Q 019110 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSG---FSRAEIIGRNGRMFQGPR---TNR--RTIMEIREAIRE-ERPIEV 94 (346)
Q Consensus 24 ~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G---~~~~e~~g~~~~~~~~~~---~~~--~~~~~~~~~~~~-~~~~~~ 94 (346)
++.+++|++++|.+ |+|+++|+++++++| ++ ++++|+++..+.+.. ... .....+...+.+ +.....
T Consensus 176 ~~~~~dGIivvD~~---G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~~ 251 (305)
T 2ykf_A 176 SPRAGDGFIRLDVD---GVVSYASPNALSAYHRMGLT-TELEGVNLIDATRPLISDPFEAHEVDEHVQDLLAGDGKGMRM 251 (305)
Confidence 46899999999997 999999999999985 44 788999887766532 100 111222223333 222222
Q ss_pred EEEeeeCCCCeEEEEeeecccccCCCCceeEEEEEeecccccccccccc
Q 019110 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (346)
Q Consensus 95 e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~~k~~~~~~ 143 (346)
+.. .+| .++.++..|+.+ +|.+.|++.+++|||+.++.++++
T Consensus 252 ei~---~~~--~~l~v~~~Pi~~--~g~~~G~Vvv~rDITE~~~lE~eL 293 (305)
T 2ykf_A 252 EVD---AGG--ATVLLRTLPLVV--AGRNVGAAILIRDVTEVKRRDRAL 293 (305)
Confidence 221 123 467788899987 578889999999999999996665
No 124
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=98.36 E-value=5.2e-07 Score=63.04 Aligned_cols=96 Identities=9% Similarity=0.065 Sum_probs=75.7
Q ss_pred CCCEEEEehhHHhhhCCCc--hhhcCCCCCcccCCCCCh--hhHHHHHHHHhcCCceEEEEEeeeCCCCeEEEEeeeccc
Q 019110 40 GHPIVFASRGFLKMSGFSR--AEIIGRNGRMFQGPRTNR--RTIMEIREAIREERPIEVNLLNYKKDGTPFWMLFKMSLV 115 (346)
Q Consensus 40 d~~i~~~N~~~~~l~G~~~--~e~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~~~~~~~~~ 115 (346)
||+|+++..+.. ..+|.+ +|++|+.+.++++++|.. ...+.+.+.+..|.....-+|++.++|.++|+......+
T Consensus 16 dGKf~~vDq~~~-r~~~~~g~qdLlGrsiy~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr~k~g~~V~~qT~sk~f 94 (132)
T 1oj5_A 16 TGKIISIDTSSL-RAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTMLSAHTRCKLC 94 (132)
T ss_dssp TCCEEEEECHHH-HTTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCEEEEEEEEEEE
T ss_pred CCcEEEEecccc-cccccccHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHcCCccccceEEEecCCcEEEEEEEEEEe
Confidence 599999999887 477777 999999999999998865 777888888887777777789999999999999999888
Q ss_pred ccCCCCceeEEEEEeeccccc
Q 019110 116 FGKEDGRATHFVAVQVPIVSR 136 (346)
Q Consensus 116 ~~~~~g~~~~~~~~~~DIT~~ 136 (346)
++|-..++..++++-.=+.+.
T Consensus 95 ~np~t~e~e~Ivs~n~v~r~~ 115 (132)
T 1oj5_A 95 YPQSPDMQPFIMGIHIIDREH 115 (132)
T ss_dssp CC----CCCEEEEEEEEECC-
T ss_pred cCCCCCCCCEEEEEEEEEcCC
Confidence 885456677777765544443
No 125
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=96.25 E-value=0.0066 Score=50.67 Aligned_cols=77 Identities=9% Similarity=0.159 Sum_probs=50.2
Q ss_pred cE-EEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCC---ceEEEEEeEec-CCC
Q 019110 253 SF-VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ---ACTVRILNYRK-DKS 327 (346)
Q Consensus 253 ~i-~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~e~~~~~~-dG~ 327 (346)
|+ ++++.. +++|+.+|..+++++|+++++++|+++..+++++.... +...+..+. ....+++.... +|.
T Consensus 43 G~Ll~~~~~--~~~i~~~S~N~~~~lg~~~~~llG~~l~~ll~~~~~~~----l~~~l~~~~~~~~~p~~~~~~~~~~~~ 116 (337)
T 2ool_A 43 GYLFVVSET--DLRIASVSANVEDLLRQPPASLLNVPIAHYLTAASAAR----LTHALHGGDPAAINPIRLDVVTPDGER 116 (337)
T ss_dssp SEEEEECTT--TCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHHHHHH----HHHHHCC----CCCSEEEEEEETTEEE
T ss_pred EEEEEEECC--CCEEEEEehhHHHHHCcCHHHHcCCCHHHHcCHHHHHH----HHHHHhcCCccccCcEEEEEeccCCCe
Confidence 44 445652 68999999999999999999999999998887654433 334343221 12234444444 456
Q ss_pred eEEEEEEe
Q 019110 328 SFWNLLHI 335 (346)
Q Consensus 328 ~~~~~~~~ 335 (346)
.+|+.++.
T Consensus 117 ~f~~~~Hr 124 (337)
T 2ool_A 117 AFNGILHR 124 (337)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 66665443
No 126
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=94.60 E-value=0.029 Score=46.78 Aligned_cols=41 Identities=7% Similarity=0.006 Sum_probs=34.5
Q ss_pred EEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCC
Q 019110 32 TITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74 (346)
Q Consensus 32 ~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~ 74 (346)
++++.. +++|+.+|.++.+++|+++++++|+++..++++..
T Consensus 46 l~~~~~--~~~i~~~S~N~~~~lg~~~~~llG~~l~~ll~~~~ 86 (337)
T 2ool_A 46 FVVSET--DLRIASVSANVEDLLRQPPASLLNVPIAHYLTAAS 86 (337)
T ss_dssp EEECTT--TCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHHH
T ss_pred EEEECC--CCEEEEEehhHHHHHCcCHHHHcCCCHHHHcCHHH
Confidence 445653 58999999999999999999999999888877643
No 127
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=92.26 E-value=1.6 Score=28.63 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=29.6
Q ss_pred HHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcCC
Q 019110 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGY 279 (346)
Q Consensus 243 l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G~ 279 (346)
+..+..++|.++++-+. ..+|+|.|.+|.+||--
T Consensus 22 iq~iY~nSPVpVCVRNq---~RkilYaN~aF~elF~K 55 (127)
T 4ew7_A 22 IQDIYKNSPVPVCVRNQ---SRKIIYANGAFIELFSK 55 (127)
T ss_dssp HHHHHTTCSSCEEEECT---TSCEEEECHHHHHHTTS
T ss_pred HHhhhcCCCccEEEecc---cceEEEecchHHHHhhc
Confidence 45678899999999999 78999999999999643
No 128
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=91.77 E-value=2.8 Score=32.19 Aligned_cols=94 Identities=9% Similarity=0.065 Sum_probs=53.8
Q ss_pred hHHHHHHHHhhCCC--cEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceE
Q 019110 16 YTLWVHEALDELPD--SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIE 93 (346)
Q Consensus 16 ~~~~~~~~~~~~~~--~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (346)
....+..+....|. .+++.|.+ |+++..+.. ...+.+ ..+ ...+..++..+...-
T Consensus 56 ~~~~L~~~~~~~~~~~~i~i~d~~---G~~~~~~~~----------~~~~~~------~~~----r~~f~~a~~~~~~~i 112 (217)
T 4dah_A 56 MQSILEKTFDSEPRFSGLYFLNAK---GDVTASTTE----------LKTKVN------LAD----RSFFIKAKETKKTVI 112 (217)
T ss_dssp HHHHHHHHHTTCTTEEEEEEEETT---CBEEEESSC----------CSSCCB------CTT----SHHHHHHHHHCSCEE
T ss_pred HHHHHHHHHhcCCcccEEEEECCC---CcEEEecCC----------CCCCCC------cch----hHHHHHHHhcCCcEE
Confidence 34556666666655 57888886 888765430 001111 111 123445555555433
Q ss_pred EEEEeeeCCCCeEEEEeeecccccCCCCceeEEEEEeecccc
Q 019110 94 VNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (346)
Q Consensus 94 ~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~ 135 (346)
.+...-...|. ++.....|+++ .+|++.|++++..++..
T Consensus 113 s~~~~~~~~g~--~~i~ia~pi~~-~~g~~~Gvl~~~i~l~~ 151 (217)
T 4dah_A 113 SDSYSSRITGQ--PIFTICVPVLD-SKRNVTDYLVAAIQIDY 151 (217)
T ss_dssp CCCEECTTTCS--EEEEEEEEEEC-TTSCEEEEEEEEEEHHH
T ss_pred eceEEcCCCCC--EEEEEEEEEEC-CCCCEEEEEEEEEcHHH
Confidence 32222233455 55667889998 79999999888776543
No 129
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=91.06 E-value=0.65 Score=30.40 Aligned_cols=35 Identities=14% Similarity=0.388 Sum_probs=30.7
Q ss_pred HHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCC
Q 019110 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFS 57 (346)
Q Consensus 20 ~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~ 57 (346)
.+.+..++|.++++-+.+ ..|+|+|.+|.+||-..
T Consensus 22 iq~iY~nSPVpVCVRNq~---RkilYaN~aF~elF~Ke 56 (127)
T 4ew7_A 22 IQDIYKNSPVPVCVRNQS---RKIIYANGAFIELFSKE 56 (127)
T ss_dssp HHHHHTTCSSCEEEECTT---SCEEEECHHHHHHTTSC
T ss_pred HHhhhcCCCccEEEeccc---ceEEEecchHHHHhhcc
Confidence 467899999999999998 89999999999996443
No 130
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=86.72 E-value=0.84 Score=37.95 Aligned_cols=40 Identities=18% Similarity=0.098 Sum_probs=34.3
Q ss_pred EEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccC
Q 019110 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295 (346)
Q Consensus 254 i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~ 295 (346)
++++|.. +++|+.++....+++|.++++++|+++..++.+
T Consensus 55 LL~l~~~--~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~ 94 (343)
T 3s7o_A 55 LLTADGH--SGEVLQMSLNAATFLGQEPTVLRGQTLAALLPE 94 (343)
T ss_dssp EEEEETT--TCBEEEEETTHHHHHSSCHHHHTTCBHHHHSTT
T ss_pred EEEEECC--CCEEEEEcccHHHHhCcChHHHcCCCHHHHHhH
Confidence 4556653 789999999999999999999999998888765
No 131
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=86.46 E-value=3.4 Score=34.15 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=34.4
Q ss_pred cEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccC
Q 019110 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295 (346)
Q Consensus 253 ~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~ 295 (346)
.++++|. +++|+.++..+.+++|.++++++|+++..++.+
T Consensus 31 ~Ll~~~~---~~~I~~~S~N~~~~lg~~~~~~lG~~l~~ll~~ 70 (327)
T 4e04_A 31 LLLALAA---DMTIVAGSDNLPELTGLAIGALIGRSAADVFDS 70 (327)
T ss_dssp EEEEECT---TCBEEEEETTHHHHHSCCHHHHTTCBHHHHBCH
T ss_pred EEEEEcC---CCeEEEEcccHHHHhCCChHhhcCCCHHHHcCH
Confidence 3456664 899999999999999999999999998887754
No 132
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=79.76 E-value=20 Score=27.99 Aligned_cols=93 Identities=12% Similarity=0.152 Sum_probs=51.6
Q ss_pred hHHHHHHHHhhCCC--cEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHh--cCCc
Q 019110 16 YTLWVHEALDELPD--SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR--EERP 91 (346)
Q Consensus 16 ~~~~~~~~~~~~~~--~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 91 (346)
....+..+....|. .+++.|.+ |+ +..+.. .. ..+.+ ..+ ...+..++. .+..
T Consensus 56 ~~~~L~~~~~~~~~~~~i~i~d~~---G~-~~~s~~------~~---~~~~~------~~~----r~~f~~a~~~~~~~~ 112 (254)
T 3lif_A 56 FNERLRALADNLPQLSDVAILDAD---GQ-LTYASV------KP---VPALD------NSD----RSYFRYHRANDDHTL 112 (254)
T ss_dssp HHHHHHHHHHHCTTEEEEEEECTT---SB-EEEESS------SS---EECCB------CTT----SHHHHHHHHCCCCCC
T ss_pred HHHHHHHHHhcCCccceEEEECCC---CC-EecCCC------CC---CCCCC------ccc----HHHHHHHHhCCCCCe
Confidence 44556667777665 57888986 88 543321 00 01111 111 123445555 3444
Q ss_pred eEEEEEeeeCCCCeEEEEeeecccccCCCCceeEEEEEeeccc
Q 019110 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (346)
Q Consensus 92 ~~~e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 134 (346)
+-.+...-...|. |+.....|+++ .+|++.|++++..++.
T Consensus 113 ~is~p~~~~~~g~--~~i~~~~pi~~-~~g~~~Gvl~~~i~l~ 152 (254)
T 3lif_A 113 LITGPIQSRTSGV--WVFVVSRRLET-TDGKFFGVVVATIESE 152 (254)
T ss_dssp EEEEEEECTTTCC--EEEEEEEEEEC-TTCCEEEEEEEEECHH
T ss_pred EECCceecCCCCc--EEEEEEeeeeC-CCCCEeEEEEEEECHH
Confidence 3333222223454 55667889998 7999999988877653
No 133
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=78.04 E-value=8.3 Score=31.86 Aligned_cols=51 Identities=20% Similarity=0.259 Sum_probs=38.0
Q ss_pred EEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhc
Q 019110 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88 (346)
Q Consensus 31 i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (346)
++++|. +++|+.++.++..++|.++++++|+++..++.+. ....+...+..
T Consensus 32 Ll~~~~---~~~I~~~S~N~~~~lg~~~~~~lG~~l~~ll~~~----~~~~l~~~l~~ 82 (327)
T 4e04_A 32 LLALAA---DMTIVAGSDNLPELTGLAIGALIGRSAADVFDSE----THNRLTIALAE 82 (327)
T ss_dssp EEEECT---TCBEEEEETTHHHHHSCCHHHHTTCBHHHHBCHH----HHHHHHHHHHS
T ss_pred EEEEcC---CCeEEEEcccHHHHhCCChHhhcCCCHHHHcCHH----HHHHHHHHhhc
Confidence 456663 5999999999999999999999999987776543 23344454443
No 134
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=76.15 E-value=1.9 Score=35.89 Aligned_cols=40 Identities=10% Similarity=0.034 Sum_probs=34.1
Q ss_pred EEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCC
Q 019110 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72 (346)
Q Consensus 31 i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~ 72 (346)
+++++.. +++|+.++.++..++|.++++++|+++..++.+
T Consensus 55 LL~l~~~--~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~ 94 (343)
T 3s7o_A 55 LLTADGH--SGEVLQMSLNAATFLGQEPTVLRGQTLAALLPE 94 (343)
T ss_dssp EEEEETT--TCBEEEEETTHHHHHSSCHHHHTTCBHHHHSTT
T ss_pred EEEEECC--CCEEEEEcccHHHHhCcChHHHcCCCHHHHHhH
Confidence 4556653 599999999999999999999999998877765
No 135
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=73.27 E-value=18 Score=28.65 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=28.2
Q ss_pred CCcEEEEcCCCCCCCeeeecHhHHHHcCCChhhh
Q 019110 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEV 284 (346)
Q Consensus 251 ~~~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~ 284 (346)
...+++.|.. ++.+.+++..+..++||+++++
T Consensus 43 ~~~~~l~D~~--~~~~~~~s~~~~~llG~~~~~~ 74 (258)
T 3clo_A 43 GGCAVISDLS--NRKSYVTVHPWANFLGLTPEEA 74 (258)
T ss_dssp SSEEEEEETT--TTEEEEEECTTCGGGCCCHHHH
T ss_pred CCeEEEEEcC--CCeEEEEeCCHHHHhCCCcccc
Confidence 3468889976 7899999999999999999987
No 136
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=71.16 E-value=41 Score=27.43 Aligned_cols=95 Identities=14% Similarity=0.016 Sum_probs=50.6
Q ss_pred hHHHHHHHHhhC-CCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceEE
Q 019110 16 YTLWVHEALDEL-PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (346)
Q Consensus 16 ~~~~~~~~~~~~-~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (346)
....++.+.+.. -..+++.|.+ |+++..+... .+..++|.+. .....+.+++.++....
T Consensus 100 l~~~L~~~~~~~~~~~i~v~d~~---G~viass~~~------~p~~~~g~d~----------~~R~yf~~Al~g~~~~~- 159 (305)
T 3e4o_A 100 INRKLEALATSAEAAVIYLIDRS---GVAVAASNWQ------EPTSFVGNDY----------AFRDYFRLAVRDGMAEH- 159 (305)
T ss_dssp HHHHHHHHHHHSSCSEEEEEETT---SBEEEETTTT------STTCCTTCBC----------TTSHHHHHHHHHSEEEE-
T ss_pred HHHHHHHHHhccCccEEEEECCC---CCEEEeCCCc------CcccccCCCc----------cccHHHHHHHhcCCcEE-
Confidence 334455444433 3468889996 8888654310 1112233221 11223455555543222
Q ss_pred EEEeeeCCCCeEEEEeeecccccCCCCceeEEEEEeecccc
Q 019110 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (346)
Q Consensus 95 e~~~~~~dg~~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT~ 135 (346)
+..-...|. ++.....|+++ +|++.|++++..|+..
T Consensus 160 -~~~~~~tg~--~~i~~a~PV~~--~G~viGVv~v~i~l~~ 195 (305)
T 3e4o_A 160 -FAMGTVSKR--PGLYISRRVDG--PGGPLGVIVAKLEFDG 195 (305)
T ss_dssp -EEECTTTCC--EEEEEEEEEEE--TTEEEEEEEEEECCHH
T ss_pred -EEEecCCCC--EEEEEEEEEcc--CCeEEEEEEEEEcHHH
Confidence 222223444 44567788887 5999999998887654
No 137
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=66.10 E-value=2.9 Score=37.15 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=34.3
Q ss_pred EEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCC
Q 019110 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296 (346)
Q Consensus 254 i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~ 296 (346)
++++|.. +++|+.++....+++|.++++++|+++..++.+.
T Consensus 32 LLal~~~--~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~~ 72 (520)
T 3zq5_A 32 VVVLQEP--DLTISQISANCTGILGRSPEDLLGRTLGEVFDSF 72 (520)
T ss_dssp EEEEETT--TTEEEEEETTHHHHHSCCHHHHTTSBHHHHCEES
T ss_pred EEEEECC--CCEEEEEcccHHHHhCcChHHHcCCCHHHHcCHH
Confidence 4556653 7899999999999999999999999987776554
No 138
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=64.44 E-value=14 Score=32.77 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=36.1
Q ss_pred EEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccc-cccCCcchhHHHHHHHHHh
Q 019110 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRF-LNGVDTDTTVLYQIKESIQ 310 (346)
Q Consensus 254 i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~-l~~~~~~~~~~~~~~~~~~ 310 (346)
++++|. +++|+.++....+++|.++ ++|+++.. ++.+. ....+...+.
T Consensus 29 Ll~l~~---~~~I~~~S~N~~~~lg~~~--~lG~~l~~~ll~~~----~~~~l~~~l~ 77 (505)
T 3nhq_A 29 LVTLRA---DGMVLAASENIQALLGFVA--SPGSYLTQEQVGPE----VLRMLEEGLT 77 (505)
T ss_dssp EEEECT---TSBEEEEETTHHHHHSSCC--CTTCBCCHHHHHHH----HHHHHHHHHS
T ss_pred EEEEcC---CCeEEEEcccHHHHhCccc--ccCCchhhhhCCHH----HHHHHHHHhh
Confidence 466677 8999999999999999998 99999887 66432 3344444443
No 139
>3tvk_A DGC, diguanylate cyclase YDEH; putative zinc sensor, C-DI-GMP, transfe; HET: C2E; 1.80A {Escherichia coli}
Probab=63.11 E-value=1.4 Score=32.96 Aligned_cols=41 Identities=12% Similarity=-0.117 Sum_probs=27.7
Q ss_pred cccccCCCCcchhhhccchhhhhhcchhhhhHhhhhcccCC
Q 019110 145 SYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDD 185 (346)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (346)
++..|+||+++|+..|....++.+...-.....++.+|+|.
T Consensus 3 rA~~D~LTgL~NR~~f~~~l~~~l~~~~~~~~~l~~iDiD~ 43 (179)
T 3tvk_A 3 RSNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDR 43 (179)
T ss_dssp CTTSCTTTCSCBHHHHHHHHHHHHHTCTTSEEEEEEEEETT
T ss_pred ccCcccccCchhHHHHHHHHHHHHHhcCCCCEEEEEEECCC
Confidence 46789999999999998887776543322233445555553
No 140
>2hje_A Autoinducer 2 sensor kinase/phosphatase LUXQ; PER/ARNT/simple-minded (PAS) fold, autoinducer-2 (AI-2), quorum sensing, histidine sensor kinase; 1.70A {Vibrio harveyi} SCOP: d.110.6.3 PDB: 2hj9_C 1zhh_B*
Probab=62.98 E-value=49 Score=25.31 Aligned_cols=83 Identities=13% Similarity=0.078 Sum_probs=54.6
Q ss_pred HhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceEEEEEeeeCCC
Q 019110 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDG 103 (346)
Q Consensus 24 ~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg 103 (346)
..++|+--++.+.+ . ++|-++-..++|.+...+ ..+.+....+..|... -....+
T Consensus 58 p~~~pDfRFI~~~~----~-~~WdDgNa~FyGi~~~~L------------------~~L~~~v~~~~~Wh~~--~~~s~~ 112 (221)
T 2hje_A 58 PSHTPEFRFLTDHK----G-IIWDDGNAHFYGVNDLIL------------------DSLANRVSFSNNWYYI--NVMTSI 112 (221)
T ss_dssp GGGCCSEEEEECSS----S-EEEECSGGGGGTCCHHHH------------------HHHHHHCCSSSSCEEE--EEEETT
T ss_pred cCCCCcEEEEEeCC----c-eEEECCCccccccCHHHH------------------HHHHhhhcccCceEEE--EeccCC
Confidence 56778877777763 3 345566667788776544 2333344444455542 234567
Q ss_pred CeEEEEeeecccccCCCCceeEEEEEee
Q 019110 104 TPFWMLFKMSLVFGKEDGRATHFVAVQV 131 (346)
Q Consensus 104 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 131 (346)
..+++.++-+|+.++..|++.|++.+..
T Consensus 113 g~~~lLvRR~pIi~~~tGeVlG~Ly~gv 140 (221)
T 2hje_A 113 GSRHMLVRRVPILDPSTGEVLGFSFNAV 140 (221)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred CceEEEEEccceecCCCCcEEEEEEEEE
Confidence 7788999999999878999999865554
No 141
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=62.48 E-value=24 Score=26.69 Aligned_cols=83 Identities=7% Similarity=0.029 Sum_probs=45.7
Q ss_pred chhHHHHHHHhccCC--cEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHhcCCce
Q 019110 238 FISSSLYISLGRIKQ--SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315 (346)
Q Consensus 238 ~~~~~l~~~~~~~~~--~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 315 (346)
.....|..+....+. .++++|. +|.++..++. . +.. ....++ ..+..++..++++
T Consensus 55 ~~~~~L~~~~~~~~~~~~i~i~d~---~G~~~~~~~~----------~--~~~----~~~~~r----~~f~~a~~~~~~~ 111 (217)
T 4dah_A 55 KMQSILEKTFDSEPRFSGLYFLNA---KGDVTASTTE----------L--KTK----VNLADR----SFFIKAKETKKTV 111 (217)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEEET---TCBEEEESSC----------C--SSC----CBCTTS----HHHHHHHHHCSCE
T ss_pred HHHHHHHHHHhcCCcccEEEEECC---CCcEEEecCC----------C--CCC----CCcchh----HHHHHHHhcCCcE
Confidence 344456666665554 5888999 8998876431 0 110 111222 2233445556654
Q ss_pred EEEEEeEecCCCeEEEEEEeeeeecCCCcc
Q 019110 316 TVRILNYRKDKSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 316 ~~e~~~~~~dG~~~~~~~~~~~i~d~~G~v 345 (346)
-.+...-...|. ++..-+.||++.+|++
T Consensus 112 is~~~~~~~~g~--~~i~ia~pi~~~~g~~ 139 (217)
T 4dah_A 112 ISDSYSSRITGQ--PIFTICVPVLDSKRNV 139 (217)
T ss_dssp ECCCEECTTTCS--EEEEEEEEEECTTSCE
T ss_pred EeceEEcCCCCC--EEEEEEEEEECCCCCE
Confidence 444333334555 6677888999888875
No 142
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=60.75 E-value=3.2 Score=36.81 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=33.9
Q ss_pred EEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCC
Q 019110 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPR 73 (346)
Q Consensus 31 i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~ 73 (346)
+++++.. +++|+.++.++..++|.++++++|+++..++++.
T Consensus 32 LLal~~~--~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~~ 72 (520)
T 3zq5_A 32 VVVLQEP--DLTISQISANCTGILGRSPEDLLGRTLGEVFDSF 72 (520)
T ss_dssp EEEEETT--TTEEEEEETTHHHHHSCCHHHHTTSBHHHHCEES
T ss_pred EEEEECC--CCEEEEEcccHHHHhCcChHHHcCCCHHHHcCHH
Confidence 4566653 5999999999999999999999999877776543
No 143
>3c38_A Autoinducer 2 sensor kinase/phosphatase LUXQ; 2-component system, quorum sensing, histidine kinase, hydrolase, inner membrane, membrane; 2.30A {Vibrio cholerae} PDB: 3c30_A
Probab=60.22 E-value=62 Score=25.63 Aligned_cols=85 Identities=14% Similarity=0.255 Sum_probs=54.2
Q ss_pred HhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCcccCCCCChhhHHHHHHHHhcCCceEEEEEeeeCCC
Q 019110 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDG 103 (346)
Q Consensus 24 ~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg 103 (346)
...+|+--++.+.+ . +.|-++-..++|.+...+ ..+.+....+..|.+. -.+..+
T Consensus 77 p~~~pDfRFI~~~~----~-~~WdDgNa~FyGi~~~~L------------------~~L~~~v~~~~~Wh~~--~~~s~~ 131 (270)
T 3c38_A 77 LSNAPDLRFISSHD----N-ILWDDGNASFYGIAQQEL------------------NKLIRRVAISGNWHLV--QTPSEG 131 (270)
T ss_dssp GGGCCSEEEEEETT----E-EEEECSCGGGGTCCHHHH------------------HHHHHHSCSSSSCEEE--EECCSS
T ss_pred ccCCCcEEEEEeCC----c-eEEECCCCceeCCCHHHH------------------HHHHhhcccCCceEEE--EeccCC
Confidence 55677777777763 2 334555566777765443 2334444445555543 235567
Q ss_pred CeEEEEeeecccccCCCCceeEEEEEeecc
Q 019110 104 TPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133 (346)
Q Consensus 104 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~DI 133 (346)
..+.+.++-+|+.++..|++.|++-+....
T Consensus 132 g~~~lLvRr~pIid~~TGEVlG~Ly~gvVL 161 (270)
T 3c38_A 132 KSVHILMRRSSLIEAGTGQVVGYLYVGIVL 161 (270)
T ss_dssp SCEEEEEEEEEECCCC-CCCCEEEEEEEEC
T ss_pred CceEEEEEccceecCCCCcEEEEEEEEEEe
Confidence 778899999999987789999987666543
No 144
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=47.52 E-value=30 Score=28.05 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=32.4
Q ss_pred hHHHHHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhC
Q 019110 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSG 55 (346)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G 55 (346)
...-++.+++..|.+.+++|.. +.++.+|+++..+++
T Consensus 97 v~p~l~~lLd~l~~PA~V~d~~---~dvla~N~~a~~L~~ 133 (292)
T 3pxp_A 97 SLQYLIDMIRNMNVPAFVTDQY---VNIIAANMITIRFFN 133 (292)
T ss_dssp HHHHHHHHHHTCSSCEEEEETT---CBEEEEEHHHHHHHT
T ss_pred cCHHHHHHHHhcCCCeEEECCC---CCHhhcCHHHHHHhC
Confidence 3455778899888899999998 999999999999995
No 145
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=44.09 E-value=74 Score=21.74 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=20.3
Q ss_pred EeeecccccCCCCceeEEEEEeecccc
Q 019110 109 LFKMSLVFGKEDGRATHFVAVQVPIVS 135 (346)
Q Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~DIT~ 135 (346)
.....|+++ ++|+++|++.+..++..
T Consensus 102 ~~~~~PV~~-~~g~viGvv~vg~~l~~ 127 (131)
T 1p0z_A 102 LRGKSPIQD-ATGKVIGIVSVGYTIEQ 127 (131)
T ss_dssp EEEEEEEEC-TTCCEEEEEEEEEEGGG
T ss_pred EEEEEeEEC-CCCCEEEEEEEEEEhHH
Confidence 344559998 78999999998887654
No 146
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=40.50 E-value=65 Score=28.49 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=29.5
Q ss_pred EEEecCCCCCCCEEEEehhHHhhhCCCchhhcCCCCCc-ccC
Q 019110 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM-FQG 71 (346)
Q Consensus 31 i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~-~~~ 71 (346)
+++++. |++|+.++.++..++|.++ ++|+++.. +++
T Consensus 29 Ll~l~~---~~~I~~~S~N~~~~lg~~~--~lG~~l~~~ll~ 65 (505)
T 3nhq_A 29 LVTLRA---DGMVLAASENIQALLGFVA--SPGSYLTQEQVG 65 (505)
T ss_dssp EEEECT---TSBEEEEETTHHHHHSSCC--CTTCBCCHHHHH
T ss_pred EEEEcC---CCeEEEEcccHHHHhCccc--ccCCchhhhhCC
Confidence 355665 4999999999999999988 89998877 654
No 147
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=39.44 E-value=82 Score=23.28 Aligned_cols=32 Identities=9% Similarity=-0.046 Sum_probs=25.5
Q ss_pred cEEEEcCCCCCC--CeeeecHhHHHHcCCChhhhhcC
Q 019110 253 SFVLIDPHLPDM--PMVYASDAFLKLTGYDRNEVVGQ 287 (346)
Q Consensus 253 ~i~~~d~~~~dg--~i~~~N~~~~~l~G~~~~e~~g~ 287 (346)
.+-+.|. .| .++..+..+++++|.+.+|+...
T Consensus 82 ~~~i~D~---Tg~~~~t~F~~~ae~ilG~sA~el~~l 115 (181)
T 1l1o_C 82 SVNIADF---QENQWVTCFQESAEAILGQNAAYLGEL 115 (181)
T ss_dssp EEEEECS---SCEEEEEEEHHHHHHHHSSCHHHHHHH
T ss_pred EEEEEeC---CCCEEEEEEhHHHHHHhCCCHHHHHHH
Confidence 4566776 44 47789999999999999998754
No 148
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=39.05 E-value=51 Score=26.72 Aligned_cols=38 Identities=8% Similarity=0.009 Sum_probs=33.1
Q ss_pred chhHHHHHHHhccCCcEEEEcCCCCCCCeeeecHhHHHHcC
Q 019110 238 FISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278 (346)
Q Consensus 238 ~~~~~l~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~l~G 278 (346)
.+...+..+++..+...+++|. ...|+.+|+++..++|
T Consensus 96 ~v~p~l~~lLd~l~~PA~V~d~---~~dvla~N~~a~~L~~ 133 (292)
T 3pxp_A 96 ESLQYLIDMIRNMNVPAFVTDQ---YVNIIAANMITIRFFN 133 (292)
T ss_dssp HHHHHHHHHHHTCSSCEEEEET---TCBEEEEEHHHHHHHT
T ss_pred ccCHHHHHHHHhcCCCeEEECC---CCCHhhcCHHHHHHhC
Confidence 3555688889888889999999 8899999999999996
No 149
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=34.38 E-value=1.7e+02 Score=22.92 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=31.9
Q ss_pred HHHHHhhCCCcEEEecCCCCCCCEEEEehhHHhhhCCCchhh
Q 019110 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEI 61 (346)
Q Consensus 20 ~~~~~~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~ 61 (346)
...+.......++++|.. ++.+.+++.++..++||+++++
T Consensus 35 ~~~~~~~~~~~~~l~D~~--~~~~~~~s~~~~~llG~~~~~~ 74 (258)
T 3clo_A 35 VRSLTEVNGGCAVISDLS--NRKSYVTVHPWANFLGLTPEEA 74 (258)
T ss_dssp HHHHHHHHSSEEEEEETT--TTEEEEEECTTCGGGCCCHHHH
T ss_pred HHHHHHHcCCeEEEEEcC--CCeEEEEeCCHHHHhCCCcccc
Confidence 344444556678899976 5899999999999999999877
No 150
>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} SCOP: d.348.1.1
Probab=32.84 E-value=35 Score=20.30 Aligned_cols=11 Identities=9% Similarity=0.148 Sum_probs=7.4
Q ss_pred eEecCCCeEEE
Q 019110 321 NYRKDKSSFWN 331 (346)
Q Consensus 321 ~~~~dG~~~~~ 331 (346)
.+.++|+++|.
T Consensus 6 ~~~~~G~frfr 16 (64)
T 3bid_A 6 YKDAKGEYRWR 16 (64)
T ss_dssp EECTTSCEEEE
T ss_pred EECCCCCEEEE
Confidence 35677777775
No 151
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=29.36 E-value=37 Score=23.67 Aligned_cols=25 Identities=12% Similarity=-0.080 Sum_probs=21.9
Q ss_pred eEecCCCeEEEEEEeeeeecCCCcc
Q 019110 321 NYRKDKSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 321 ~~~~dG~~~~~~~~~~~i~d~~G~v 345 (346)
.+++||.++...-++..+.|.+|++
T Consensus 80 ~rR~dG~~i~FddNA~Vlin~~g~p 104 (132)
T 1vq8_K 80 IRRPDGTRVKFEDNAAVIVDENEDP 104 (132)
T ss_dssp EECTTSCEEEESSCEEEEECTTSCB
T ss_pred cCcCCCcEEEeCCceEEEECCCCCE
Confidence 3689999999999999999998876
No 152
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=27.66 E-value=42 Score=23.04 Aligned_cols=25 Identities=20% Similarity=-0.072 Sum_probs=21.7
Q ss_pred eEecCCCeEEEEEEeeeeecCCCcc
Q 019110 321 NYRKDKSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 321 ~~~~dG~~~~~~~~~~~i~d~~G~v 345 (346)
.+++||.++-..-++..+.|.+|++
T Consensus 69 ~rR~dG~~i~FddNa~Vlin~~~~p 93 (122)
T 3v2d_O 69 IKRPDGSAIRFDDNAAVIINNQLEP 93 (122)
T ss_dssp EECTTSCEEEESSCEEEEECTTSCB
T ss_pred cCCCCCcEEEcCCcEEEEECCCCCE
Confidence 4688999999999999999998876
No 153
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J
Probab=26.94 E-value=42 Score=23.52 Aligned_cols=26 Identities=19% Similarity=0.155 Sum_probs=22.3
Q ss_pred eEecCCCeEEEEEEeeeeecCCCccC
Q 019110 321 NYRKDKSSFWNLLHISPIRNASGKVL 346 (346)
Q Consensus 321 ~~~~dG~~~~~~~~~~~i~d~~G~v~ 346 (346)
++++||.++.+.-++..+.|.+|++.
T Consensus 85 ~rR~dG~~i~FddNA~Vlin~~g~p~ 110 (137)
T 3u5e_V 85 WRRRDGVFLYFEDNAGVIANPKGEMK 110 (137)
T ss_dssp EECTTSCEEEESSCEEEEBCTTCCBS
T ss_pred cCcCCCeEEEcCCceEEEECCCCCEe
Confidence 47899999999999999999988763
No 154
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=26.52 E-value=2e+02 Score=21.42 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=19.4
Q ss_pred EEEeeecccccCCC-CceeEEEEEeeccc
Q 019110 107 WMLFKMSLVFGKED-GRATHFVAVQVPIV 134 (346)
Q Consensus 107 ~~~~~~~~~~~~~~-g~~~~~~~~~~DIT 134 (346)
++.....|+++ .+ |++.|++++..+..
T Consensus 118 ~~i~~~~pi~~-~~~g~~~Gvl~~~i~~~ 145 (240)
T 3c8c_A 118 ILVSVATPVKD-SATGQFLGSIFYDVSLA 145 (240)
T ss_dssp EEEEEEEEEEC-TTTCCEEEEEEEEECHH
T ss_pred EEEEEEEEEEE-CCCCeEEEEEEEEEEHH
Confidence 45556788887 55 99999888766543
No 155
>3hva_A Protein FIMX; ggdef diguanylate cyclase, biofilm, C-DI-GMP, transferase; 2.04A {Pseudomonas aeruginosa PAO1}
Probab=26.36 E-value=20 Score=26.04 Aligned_cols=27 Identities=11% Similarity=-0.076 Sum_probs=21.0
Q ss_pred ccccccCCCCcchhhhccchhhhhhcc
Q 019110 144 MSYSEDGGGSRLREIVFGSCRREVCSD 170 (346)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (346)
..+..|++|+++|+..|....+..+..
T Consensus 11 ~~~~~D~lTgL~Nr~~f~~~l~~~~~~ 37 (177)
T 3hva_A 11 EVSSQDPVTGLYNRSHFLDLMDAAVQQ 37 (177)
T ss_dssp -CCCBCTTTCSEEHHHHHHHHHHHHHH
T ss_pred HhhCcCcccccchHHHHHHHHHHHHHH
Confidence 455789999999999998887765443
No 156
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=23.25 E-value=36 Score=23.33 Aligned_cols=25 Identities=16% Similarity=-0.110 Sum_probs=21.5
Q ss_pred eEecCCCeEEEEEEeeeeecCCCcc
Q 019110 321 NYRKDKSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 321 ~~~~dG~~~~~~~~~~~i~d~~G~v 345 (346)
.+++||.++...-++..+.|.+|++
T Consensus 69 ~rR~dG~~i~FddNa~Vlin~~g~p 93 (122)
T 1whi_A 69 VRRPDGSYIRFDENACVIIRDDKSP 93 (122)
T ss_dssp EECTTSCEECCSSCEEEEECTTSCB
T ss_pred eecCCCCEEEeCCceEEEECCCCCE
Confidence 3689999999888999999988876
No 157
>3lic_A Sensor protein; PDC fold, ATP-binding, kinase, nucleotide-binding, phosphopr transferase, transmembrane; 2.30A {Shewanella oneidensis}
Probab=22.98 E-value=2.6e+02 Score=21.52 Aligned_cols=27 Identities=7% Similarity=-0.124 Sum_probs=20.1
Q ss_pred EEEeeecccccCCCCceeEEEEEeecccc
Q 019110 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (346)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~~~~DIT~ 135 (346)
++.....|+.+ +|++.|++++-.++..
T Consensus 145 ~~i~~~~pi~~--~g~~~Gv~~~~i~l~~ 171 (274)
T 3lic_A 145 LMITYAVPFGV--QPDYFGVTTVDLALDR 171 (274)
T ss_dssp EEEEEEEEESC--TTCCCEEEEEEEEGGG
T ss_pred EEEEEEEEEcc--CCEEEEEEEEEEEHHH
Confidence 45566788877 7899999888776554
No 158
>2k7i_A UPF0339 protein ATU0232; protein of unknown function, swapped dimer. PSI2, structural genomics, unknown function; NMR {Agrobacterium tumefaciens str} SCOP: d.348.1.1
Probab=22.70 E-value=76 Score=20.01 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=14.7
Q ss_pred EEEEeEecCCCeEEEEEEeeeeecCCCccC
Q 019110 317 VRILNYRKDKSSFWNLLHISPIRNASGKVL 346 (346)
Q Consensus 317 ~e~~~~~~dG~~~~~~~~~~~i~d~~G~v~ 346 (346)
+|+ ...++|+++|. ++..+|+||
T Consensus 25 FEi-~k~~~Gq~rFr------LkA~NGevI 47 (83)
T 2k7i_A 25 FEI-YQDKAGEYRFR------FKASNGETM 47 (83)
T ss_dssp EEE-EECTTSCEEEE------ECCTTSCCC
T ss_pred EEE-EEcCCCCEEEE------EEECCCCEE
Confidence 443 36788998885 445566654
No 159
>3qyy_A Response regulator; C-DI-GMP, DGC, ggdef, competitive inhibition, xanthomonas Ca signaling protein-inhibitor complex; HET: C2E; 1.90A {Xanthomonas campestris PV}
Probab=22.56 E-value=28 Score=24.96 Aligned_cols=27 Identities=11% Similarity=-0.107 Sum_probs=20.7
Q ss_pred ccccccCCCCcchhhhccchhhhhhcc
Q 019110 144 MSYSEDGGGSRLREIVFGSCRREVCSD 170 (346)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (346)
..+..|++|+++|+..|....+..+..
T Consensus 9 ~~a~~D~lTgL~Nr~~f~~~l~~~~~~ 35 (167)
T 3qyy_A 9 RHALFDPLTEALNRRGCEQAMRDSVTA 35 (167)
T ss_dssp -CTTBCTTTCSBCHHHHHHHHHHHHHH
T ss_pred HHhCcCcccCCCcHHHHHHHHHHHHHH
Confidence 445789999999999998877765443
No 160
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=22.41 E-value=34 Score=23.42 Aligned_cols=25 Identities=12% Similarity=-0.036 Sum_probs=21.3
Q ss_pred eEecCCCeEEEEEEeeeeecCCCcc
Q 019110 321 NYRKDKSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 321 ~~~~dG~~~~~~~~~~~i~d~~G~v 345 (346)
.+++||.++...-++..+.|.+|++
T Consensus 69 ~rR~dG~~i~FddNa~Vlin~~g~p 93 (121)
T 3bbo_M 69 LKRDNGMIIRYDDNAAVIIDQEGNP 93 (121)
T ss_dssp EECTTSCEECCSSCEEEECCTTSSC
T ss_pred cccCCCCEEEeCCceEEEECCCCCE
Confidence 3689999998888888899988876
No 161
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=21.43 E-value=2.7e+02 Score=21.16 Aligned_cols=83 Identities=11% Similarity=0.128 Sum_probs=43.5
Q ss_pred chhHHHHHHHhccCC--cEEEEcCCCCCCCeeeecHhHHHHcCCChhhhhcCCccccccCCcchhHHHHHHHHHh--cCC
Q 019110 238 FISSSLYISLGRIKQ--SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ--TEQ 313 (346)
Q Consensus 238 ~~~~~l~~~~~~~~~--~i~~~d~~~~dg~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~--~~~ 313 (346)
.....|.......+. .++++|. +|+ +..+.. .. ..+. .+.++ ..+..++. .++
T Consensus 55 ~~~~~L~~~~~~~~~~~~i~i~d~---~G~-~~~s~~------~~---~~~~------~~~~r----~~f~~a~~~~~~~ 111 (254)
T 3lif_A 55 VFNERLRALADNLPQLSDVAILDA---DGQ-LTYASV------KP---VPAL------DNSDR----SYFRYHRANDDHT 111 (254)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEECT---TSB-EEEESS------SS---EECC------BCTTS----HHHHHHHHCCCCC
T ss_pred HHHHHHHHHHhcCCccceEEEECC---CCC-EecCCC------CC---CCCC------CcccH----HHHHHHHhCCCCC
Confidence 344556666665554 5899999 898 443221 00 0011 11222 22334444 355
Q ss_pred ceEEEEEeEecCCCeEEEEEEeeeeecCCCcc
Q 019110 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKV 345 (346)
Q Consensus 314 ~~~~e~~~~~~dG~~~~~~~~~~~i~d~~G~v 345 (346)
.+-.+...-...|. |+..-..||++.+|++
T Consensus 112 ~~is~p~~~~~~g~--~~i~~~~pi~~~~g~~ 141 (254)
T 3lif_A 112 LLITGPIQSRTSGV--WVFVVSRRLETTDGKF 141 (254)
T ss_dssp CEEEEEEECTTTCC--EEEEEEEEEECTTCCE
T ss_pred eEECCceecCCCCc--EEEEEEeeeeCCCCCE
Confidence 54444333233444 6667788999988875
No 162
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=21.37 E-value=34 Score=15.77 Aligned_cols=11 Identities=18% Similarity=0.374 Sum_probs=6.8
Q ss_pred eeeecCCCccC
Q 019110 336 SPIRNASGKVL 346 (346)
Q Consensus 336 ~~i~d~~G~v~ 346 (346)
+.|+|.+|+++
T Consensus 7 s~IYD~~g~~i 17 (26)
T 2v2f_A 7 SKIYDNKNQLI 17 (26)
T ss_pred CEEEeCCCCEe
Confidence 45677777653
Done!