BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019112
(346 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 275 bits (704), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 131/219 (59%), Positives = 159/219 (72%), Gaps = 7/219 (3%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDN 190
VP S+DWR+KGAVT +K+QG CGSCWAFS + AVEGI QI KL+ LSEQ+LVDC TD
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61
Query: 191 N-GCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDE 249
N GC+GGLMD AFE+I + G+ TEA+YPY+ GTCD KE A A +I +E++P+ DE
Sbjct: 62 NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDE 121
Query: 250 HALLQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGAKYW 309
+ALL+AV QPVSV ++A G F+FY GV CG DHGVA+VG+GT DG KYW
Sbjct: 122 NALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAIVGYGTT--IDGTKYW 179
Query: 310 LIKNSWGETWGESGYIRILR----DEGLCGIATEASYPV 344
+KNSWG WGE GYIR+ R EGLCGIA EASYP+
Sbjct: 180 TVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPI 218
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 269 bits (687), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 131/225 (58%), Positives = 156/225 (69%), Gaps = 10/225 (4%)
Query: 128 VTDVPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCS 187
V+D+P S+DWR+KGAVT +K+QG CGSCWAFS V +VEGI I G L+ LSEQ+L+DC
Sbjct: 1 VSDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCD 60
Query: 188 T-DNNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQK---EKAAAATIGKYED 243
T DN+GC GGLMD AFEYI N GL TEA YPY+ +GTC+ + I ++D
Sbjct: 61 TADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQD 120
Query: 244 LPKGDEHALLQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEE 303
+P E L +AV QPVSV VEASG+AF FY GV ECG DHGVAVVG+G A E
Sbjct: 121 VPANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGECGTELDHGVAVVGYGVA--E 178
Query: 304 DGAKYWLIKNSWGETWGESGYIRILRDE----GLCGIATEASYPV 344
DG YW +KNSWG +WGE GYIR+ +D GLCGIA EASYPV
Sbjct: 179 DGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPV 223
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 248 bits (634), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 131/310 (42%), Positives = 181/310 (58%), Gaps = 12/310 (3%)
Query: 38 IVEKHEQWMAQHGRTYKDELEKAMRLTIFKQNLEYIEKANKEGNRTYKLGTNEFSDLTNE 97
+++ WM H + Y++ EK R IFK NL YI++ NK+ N +Y LG NEF+DL+N+
Sbjct: 18 LIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKK-NNSYWLGLNEFADLSND 76
Query: 98 EFRASYTGYNXXXXXXXXXXXXXXTFKYQNVTDVPTSIDWREKGAVTHIKNQGHCGSCWA 157
EF Y G F +++ ++P ++DWR+KGAVT +++QG CGSCWA
Sbjct: 77 EFNEKYVG---SLIDATIEQSYDEEFINEDIVNLPENVDWRKKGAVTPVRHQGSCGSCWA 133
Query: 158 FSAVAAVEGITQITGGKLIELSEQQLVDCSTDNNGCSGGLMDKAFEYIIENKGLATEADY 217
FSAVA VEGI +I GKL+ELSEQ+LVDC ++GC GG A EY+ +N G+ + Y
Sbjct: 134 FSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKN-GIHLRSKY 192
Query: 218 PYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEHALLQAVTKQPVSVCVEASGQAFRFYKR 277
PY+ +QGTC ++ + +E LL A+ KQPVSV VE+ G+ F+ YK
Sbjct: 193 PYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKG 252
Query: 278 GVLNAECGDNCDHGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRILR----DEGL 333
G+ CG D V VG+G + + LIKNSWG WGE GYIRI R G+
Sbjct: 253 GIFEGPCGTKVDGAVTAVGYGKSGGKGYI---LIKNSWGTAWGEKGYIRIKRAPGNSPGV 309
Query: 334 CGIATEASYP 343
CG+ + YP
Sbjct: 310 CGLYKSSYYP 319
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 241 bits (616), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 151/219 (68%), Gaps = 8/219 (3%)
Query: 130 DVPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD 189
D+P SIDWRE GAV +KNQG CGSCWAFS VAAVEGI QI G LI LSEQQLVDC+T
Sbjct: 2 DLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTA 61
Query: 190 NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDE 249
N+GC GG M+ AF++I+ N G+ +E YPY+ + G C+ A +I YE++P +E
Sbjct: 62 NHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGICNSTV-NAPVVSIDSYENVPSHNE 120
Query: 250 HALLQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGAKYW 309
+L +AV QPVSV ++A+G+ F+ Y+ G+ C + +H + VVG+GT ++D +W
Sbjct: 121 QSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGSCNISANHALTVVGYGTENDKD---FW 177
Query: 310 LIKNSWGETWGESGYIRILRD----EGLCGIATEASYPV 344
++KNSWG+ WGESGYIR R+ +G CGI ASYPV
Sbjct: 178 IVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPV 216
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 241 bits (615), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 135/318 (42%), Positives = 189/318 (59%), Gaps = 18/318 (5%)
Query: 35 EPSIVEKHEQWMAQHGRTYKDELEKAMRLTIFKQNLEYIEKANKE---GNRTYKLGTNEF 91
+P++ W +G+ YK++ E+A+R I+++NL+++ N E G +Y LG N
Sbjct: 5 DPTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHL 64
Query: 92 SDLTNEEFRASYTGYNXXXXXXXXXXXXXXTFKYQNVTDVPTSIDWREKGAVTHIKNQGH 151
D+T+EE + + T+K +P S+DWREKG VT +K QG
Sbjct: 65 GDMTSEEVMSLMSSLRVPSQWQRNI-----TYKSNPNRILPDSVDWREKGCVTEVKYQGS 119
Query: 152 CGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD---NNGCSGGLMDKAFEYIIEN 208
CG+ WAFSAV A+E ++ GKL+ LS Q LVDCST+ N GC+GG M AF+YII+N
Sbjct: 120 CGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDN 179
Query: 209 KGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEHALLQAV-TKQPVSVCVEA 267
KG+ ++A YPY+ C + K AAT KY +LP G E L +AV K PVSV V+A
Sbjct: 180 KGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDA 238
Query: 268 SGQAFRFYKRGV-LNAECGDNCDHGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIR 326
+F Y+ GV C N +HGV VVG+G + +G +YWL+KNSWG +GE GYIR
Sbjct: 239 RHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG---DLNGKEYWLVKNSWGHNFGEEGYIR 295
Query: 327 ILRDEG-LCGIATEASYP 343
+ R++G CGIA+ SYP
Sbjct: 296 MARNKGNHCGIASFPSYP 313
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 240 bits (613), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 135/311 (43%), Positives = 185/311 (59%), Gaps = 19/311 (6%)
Query: 44 QWMAQHGRTYKDELEKAMRLTIFKQNLEYIEKAN---KEGNRTYKLGTNEFSDLTNEEFR 100
+W A H R Y E+ R ++++N++ IE N +EG ++ + N F D+T+EEFR
Sbjct: 10 KWKAMHNRLYGMN-EEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFR 68
Query: 101 ASYTGYNXXXXXXXXXXXXXXTFKYQNVTDVPTSIDWREKGAVTHIKNQGHCGSCWAFSA 160
G F+ + P S+DWREKG VT +KNQG CGS WAFSA
Sbjct: 69 QVMNGLQNRKPRKGK------VFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSSWAFSA 122
Query: 161 VAAVEGITQITGGKLIELSEQQLVDCSTD--NNGCSGGLMDKAFEYIIENKGLATEADYP 218
A+EG G+LI LSEQ LVDCS N GC+GGLMD AF+Y+ +N GL +E YP
Sbjct: 123 TGALEGQMFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQYVQDNGGLDSEESYP 182
Query: 219 YQQEQGTCDKQKEKAAAATIGKYEDLPKGDEHALLQAV-TKQPVSVCVEASGQAFRFYKR 277
Y+ + +C K K + A + D+PK E AL++AV T P+SV ++A ++F FYK
Sbjct: 183 YEATEESC-KYNPKYSVANDAGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKE 240
Query: 278 GV-LNAEC-GDNCDHGVAVVGFG-TAEEEDGAKYWLIKNSWGETWGESGYIRILRD-EGL 333
G+ +C ++ DHGV VVG+G + E DG KYWL+KNSWGE WG GY+++ +D
Sbjct: 241 GIYFEPDCSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGYVKMAKDRRNH 300
Query: 334 CGIATEASYPV 344
CGIA+ ASYP
Sbjct: 301 CGIASAASYPT 311
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 239 bits (611), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 127/316 (40%), Positives = 181/316 (57%), Gaps = 25/316 (7%)
Query: 38 IVEKHEQWMAQHGRTYKDELEKAMRLTIFKQNLEYIEKANKEGNRTYKLGTNEFSDLTNE 97
+++ E WM +H + YK+ EK R IFK NL+YI++ NK+ N +Y LG N F+D++N+
Sbjct: 62 LIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKK-NNSYWLGLNVFADMSND 120
Query: 98 EFRASYTGYNXXXXXXXXXXXXXXTFKYQNV-----TDVPTSIDWREKGAVTHIKNQGHC 152
EF+ YTG Y+ V ++P +DWR+KGAVT +KNQG C
Sbjct: 121 EFKEKYTG-------SIAGNYTTTELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSC 173
Query: 153 GSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDNNGCSGGLMDKAFEYIIENKGLA 212
GS WAFSAV+ +E I +I G L E SEQ+L+DC + GC+GG A + ++ G+
Sbjct: 174 GSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQ-LVAQYGIH 232
Query: 213 TEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEHALLQAVTKQPVSVCVEASGQAF 272
YPY+ Q C +++ AA + +E ALL ++ QPVSV +EA+G+ F
Sbjct: 233 YRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDF 292
Query: 273 RFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRILR--- 329
+ Y+ G+ CG+ DH VA VG+ G Y LI+NSWG WGE+GYIRI R
Sbjct: 293 QLYRGGIFVGPCGNKVDHAVAAVGY-------GPNYILIRNSWGTGWGENGYIRIKRGTG 345
Query: 330 -DEGLCGIATEASYPV 344
G+CG+ T + YPV
Sbjct: 346 NSYGVCGLYTSSFYPV 361
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 239 bits (610), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 134/311 (43%), Positives = 185/311 (59%), Gaps = 19/311 (6%)
Query: 44 QWMAQHGRTYKDELEKAMRLTIFKQNLEYIEKAN---KEGNRTYKLGTNEFSDLTNEEFR 100
+W A H R Y E+ R ++++N++ IE N +EG ++ + N F D+T+EEFR
Sbjct: 14 KWKAMHNRLYGMN-EEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFR 72
Query: 101 ASYTGYNXXXXXXXXXXXXXXTFKYQNVTDVPTSIDWREKGAVTHIKNQGHCGSCWAFSA 160
G+ F+ + P S+DWREKG VT +KNQG CGS WAFSA
Sbjct: 73 QVMNGFQNRKPRKGK------VFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSXWAFSA 126
Query: 161 VAAVEGITQITGGKLIELSEQQLVDCS--TDNNGCSGGLMDKAFEYIIENKGLATEADYP 218
A+EG G+LI LSEQ LVDCS N GC+GGLMD AF+Y+ +N GL +E YP
Sbjct: 127 TGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYP 186
Query: 219 YQQEQGTCDKQKEKAAAATIGKYEDLPKGDEHALLQAV-TKQPVSVCVEASGQAFRFYKR 277
Y+ + +C K K + A + D+PK E AL++AV T P+SV ++A ++F FYK
Sbjct: 187 YEATEESC-KYNPKYSVANDAGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKE 244
Query: 278 GV-LNAEC-GDNCDHGVAVVGFG-TAEEEDGAKYWLIKNSWGETWGESGYIRILRD-EGL 333
G+ +C ++ DHGV VVG+G + E D KYWL+KNSWGE WG GY+++ +D
Sbjct: 245 GIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNH 304
Query: 334 CGIATEASYPV 344
CGIA+ ASYP
Sbjct: 305 CGIASAASYPT 315
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 233 bits (595), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 114/219 (52%), Positives = 143/219 (65%), Gaps = 8/219 (3%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDN 190
+P +DWR GAV IK+QG CGSCWAFS +AAVEGI +I G LI LSEQ+LVDC
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 191 N--GCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGD 248
N GC GG M F++II N G+ TEA+YPY E+G C+ ++ +I YE++P +
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNN 120
Query: 249 EHALLQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGAKY 308
E AL AV QPVSV +EA+G F+ Y G+ CG DH V +VG+GT E G Y
Sbjct: 121 EWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGT---EGGIDY 177
Query: 309 WLIKNSWGETWGESGYIRILRD---EGLCGIATEASYPV 344
W++KNSWG TWGE GY+RI R+ G CGIA +ASYPV
Sbjct: 178 WIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPV 216
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 142/219 (64%), Gaps = 8/219 (3%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDN 190
+P +DWR GAV IK+QG CGS WAFS +AAVEGI +I G LI LSEQ+LVDC
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 191 N--GCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGD 248
N GC GG M F++II N G+ TEA+YPY E+G C+ ++ +I YE++P +
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNN 120
Query: 249 EHALLQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGAKY 308
E AL AV QPVSV +EA+G F+ Y G+ CG DH V +VG+GT E G Y
Sbjct: 121 EWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGT---EGGIDY 177
Query: 309 WLIKNSWGETWGESGYIRILRD---EGLCGIATEASYPV 344
W++KNSWG TWGE GY+RI R+ G CGIA +ASYPV
Sbjct: 178 WIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPV 216
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 229 bits (585), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 111/219 (50%), Positives = 142/219 (64%), Gaps = 8/219 (3%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDN 190
+P+ +DWR GAV IK+QG CG CWAFSA+A VEGI +I G LI LSEQ+L+DC
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 191 N--GCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGD 248
N GC+GG + F++II N G+ TE +YPY + G C+ + TI YE++P +
Sbjct: 61 NTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYENVPYNN 120
Query: 249 EHALLQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGAKY 308
E AL AVT QPVSV ++A+G AF+ Y G+ CG DH V +VG+GT E G Y
Sbjct: 121 EWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTAIDHAVTIVGYGT---EGGIDY 177
Query: 309 WLIKNSWGETWGESGYIRILRD---EGLCGIATEASYPV 344
W++KNSW TWGE GY+RILR+ G CGIAT SYPV
Sbjct: 178 WIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPV 216
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 128/319 (40%), Positives = 187/319 (58%), Gaps = 15/319 (4%)
Query: 33 MHEPSIVEKH-EQWMAQHGRTYKDELEKAMRLTIFKQNLEYIEKANKE---GNRTYKLGT 88
++ I++ H E W H + Y +++++ R I+++NL+YI N E G TY+L
Sbjct: 1 LYPEEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAM 60
Query: 89 NEFSDLTNEEFRASYTGYNXXXXXXXXXXXXXXTFKYQNVTDVPTSIDWREKGAVTHIKN 148
N D+T+EE TG + + P S+D+R+KG VT +KN
Sbjct: 61 NHLGDMTSEEVVQKMTGL---KVPLSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTPVKN 117
Query: 149 QGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDNNGCSGGLMDKAFEYIIEN 208
QG CGSCWAFS+V A+EG + GKL+ LS Q LVDC ++N+GC GG M AF+Y+ +N
Sbjct: 118 QGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKN 177
Query: 209 KGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEHALLQAVTKQ-PVSVCVEA 267
+G+ +E YPY ++ +C AA G Y ++P+G+E AL +AV + PVSV ++A
Sbjct: 178 RGIDSEDAYPYVGQEESCMYNPTGKAAKCRG-YREIPEGNEKALKRAVARVGPVSVAIDA 236
Query: 268 SGQAFRFYKRGVLNAEC--GDNCDHGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYI 325
S +F+FY +GV E DN +H V VG+G + G K+W+IKNSWGE WG GYI
Sbjct: 237 SLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGI---QKGNKHWIIKNSWGENWGNKGYI 293
Query: 326 RILRDE-GLCGIATEASYP 343
+ R++ CGIA AS+P
Sbjct: 294 LMARNKNNACGIANLASFP 312
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 228 bits (582), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 108/217 (49%), Positives = 144/217 (66%), Gaps = 9/217 (4%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDN 190
+P+ +DWR KGAV IKNQ CGSCWAFSAVAAVE I +I G+LI LSEQ+LVDC T +
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTAS 60
Query: 191 NGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEH 250
+GC+GG M+ AF+YII N G+ T+ +YPY QG+C + + +I ++ + + +E
Sbjct: 61 HGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSCKPYRLR--VVSINGFQRVTRNNES 118
Query: 251 ALLQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGAKYWL 310
AL AV QPVSV VEA+G F+ Y G+ CG +HGV +VG+GT + G YW+
Sbjct: 119 ALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQNHGVVIVGYGT---QSGKNYWI 175
Query: 311 IKNSWGETWGESGYIRILRD----EGLCGIATEASYP 343
++NSWG+ WG GYI + R+ GLCGIA SYP
Sbjct: 176 VRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYP 212
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 228 bits (581), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 110/219 (50%), Positives = 141/219 (64%), Gaps = 8/219 (3%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDN 190
+P+ +DWR GAV IK+QG CG WAFSA+A VEGI +IT G LI LSEQ+L+DC
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 191 N--GCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGD 248
N GC GG + F++II + G+ TE +YPY + G CD + TI YE++P +
Sbjct: 61 NTRGCDGGYITDGFQFIINDGGINTEENYPYTAQDGDCDVALQDQKYVTIDTYENVPYNN 120
Query: 249 EHALLQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGAKY 308
E AL AVT QPVSV ++A+G AF+ Y G+ CG DH + +VG+GT E G Y
Sbjct: 121 EWALQTAVTYQPVSVALDAAGDAFKQYASGIFTGPCGTAVDHAIVIVGYGT---EGGVDY 177
Query: 309 WLIKNSWGETWGESGYIRILRD---EGLCGIATEASYPV 344
W++KNSW TWGE GY+RILR+ G CGIAT SYPV
Sbjct: 178 WIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPV 216
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/263 (46%), Positives = 161/263 (61%), Gaps = 15/263 (5%)
Query: 89 NEFSDLTNEEFRASYTGYNXXXXXXXXXXXXXXTFKYQNVTDVPTSIDWREKGAVTHIKN 148
N F D+T+EEFR G+ F+ + P S+DWREKG VT +KN
Sbjct: 3 NAFGDMTSEEFRQVMNGFQNRKPRKGK------VFQEPLFYEAPRSVDWREKGYVTPVKN 56
Query: 149 QGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD--NNGCSGGLMDKAFEYII 206
QG CGSCWAFSA A+EG G+LI LSEQ LVDCS N GC+GGLMD AF+Y+
Sbjct: 57 QGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQ 116
Query: 207 ENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEHALLQAV-TKQPVSVCV 265
+N GL +E YPY+ + +C K K + A + D+PK E AL++AV T P+SV +
Sbjct: 117 DNGGLDSEESYPYEATEESC-KYNPKYSVANDAGFVDIPK-QEKALMKAVATVGPISVAI 174
Query: 266 EASGQAFRFYKRGV-LNAEC-GDNCDHGVAVVGFG-TAEEEDGAKYWLIKNSWGETWGES 322
+A ++F FYK G+ +C ++ DHGV VVG+G + E D KYWL+KNSWGE WG
Sbjct: 175 DAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMG 234
Query: 323 GYIRILRD-EGLCGIATEASYPV 344
GY+++ +D CGIA+ ASYP
Sbjct: 235 GYVKMAKDRRNHCGIASAASYPT 257
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 221 bits (564), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 104/217 (47%), Positives = 141/217 (64%), Gaps = 12/217 (5%)
Query: 132 PTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDNN 191
P SIDWREKGAVT +KNQ CGSCWAFS VA +EGI +I G+LI LSEQ+L+DC ++
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRSH 61
Query: 192 GCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEHA 251
GC GG + +Y+++N G+ TE +YPY+++QG C + +K I Y+ +P DE +
Sbjct: 62 GCDGGYQTTSLQYVVDN-GVHTEREYPYEKKQGRCRAKDKKGPKVYITGYKYVPANDEIS 120
Query: 252 LLQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGAKYWLI 311
L+QA+ QPVSV ++ G+ F+FYK G+ CG N DH V VG+G Y L+
Sbjct: 121 LIQAIANQPVSVVTDSRGRGFQFYKGGIYEGPCGTNTDHAVTAVGYGKT-------YLLL 173
Query: 312 KNSWGETWGESGYIRIL----RDEGLCGIATEASYPV 344
KNSWG WGE GYIRI R +G CG+ T + +P+
Sbjct: 174 KNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFPI 210
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 216 bits (551), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 138/215 (64%), Gaps = 12/215 (5%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDN 190
+P IDWR+KGAVT +KNQG CGSCWAFS V+ VE I QI G LI LSEQQLVDC+ N
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNKKN 60
Query: 191 NGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEH 250
+GC GG A++YII+N G+ TEA+YPY+ QG C K+ I Y+ +P +E+
Sbjct: 61 HGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQGPCRAAKK---VVRIDGYKGVPHCNEN 117
Query: 251 ALLQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGAKYWL 310
AL +AV QP V ++AS + F+ YK G+ + CG +HGV +VG+ YW+
Sbjct: 118 ALKKAVASQPSVVAIDASSKQFQHYKSGIFSGPCGTKLNHGVVIVGYWK-------DYWI 170
Query: 311 IKNSWGETWGESGYIRILR--DEGLCGIATEASYP 343
++NSWG WGE GYIR+ R GLCGIA YP
Sbjct: 171 VRNSWGRYWGEQGYIRMKRVGGCGLCGIARLPYYP 205
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 214 bits (545), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 106/215 (49%), Positives = 134/215 (62%), Gaps = 12/215 (5%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDN 190
+P +DWR KGAV +KNQG CGSCWAFS V VE I QI G LI LSEQQLVDCS N
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSKKN 60
Query: 191 NGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEH 250
+GC GG D+A++YII N G+ TEA+YPY+ QG C K+ I + +P+ +E+
Sbjct: 61 HGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQGPCRAAKK---VVRIDGCKGVPQCNEN 117
Query: 251 ALLQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGAKYWL 310
AL AV QP V ++AS + F+ YK G+ CG +HGV +VG+G YW+
Sbjct: 118 ALKNAVASQPSVVAIDASSKQFQHYKGGIFTGPCGTKLNHGVVIVGYGK-------DYWI 170
Query: 311 IKNSWGETWGESGYIRILR--DEGLCGIATEASYP 343
++NSWG WGE GY R+ R GLCGIA YP
Sbjct: 171 VRNSWGRHWGEQGYTRMKRVGGCGLCGIARLPFYP 205
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 213 bits (543), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 106/215 (49%), Positives = 136/215 (63%), Gaps = 12/215 (5%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDN 190
+P IDWR+KGAVT +KNQG CGSCWAFS V+ VE I QI G LI LSEQ+LVDC N
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKN 60
Query: 191 NGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEH 250
+GC GG A++YII N G+ T+A+YPY+ QG C + + +I Y +P +E
Sbjct: 61 HGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGPC---QAASKVVSIDGYNGVPFCNEX 117
Query: 251 ALLQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGAKYWL 310
AL QAV QP +V ++AS F+ Y G+ + CG +HGV +VG+ A YW+
Sbjct: 118 ALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVGY-------QANYWI 170
Query: 311 IKNSWGETWGESGYIRILR--DEGLCGIATEASYP 343
++NSWG WGE GYIR+LR GLCGIA YP
Sbjct: 171 VRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYP 205
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 145/219 (66%), Gaps = 10/219 (4%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD- 189
+P S+DWREKG VT +K QG CG+CWAFSAV A+E ++ GKL+ LS Q LVDCST+
Sbjct: 4 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 63
Query: 190 --NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKG 247
N GC+GG M AF+YII+NKG+ ++A YPY+ C + K AAT KY +LP G
Sbjct: 64 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 122
Query: 248 DEHALLQAV-TKQPVSVCVEASGQAFRFYKRGV-LNAECGDNCDHGVAVVGFGTAEEEDG 305
E L +AV K PVSV V+A +F Y+ GV C N +HGV VVG+G + +G
Sbjct: 123 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG---DLNG 179
Query: 306 AKYWLIKNSWGETWGESGYIRILRDEG-LCGIATEASYP 343
+YWL+KNSWG +GE GYIR+ R++G CGIA+ SYP
Sbjct: 180 KEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 218
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 145/219 (66%), Gaps = 10/219 (4%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD- 189
+P S+DWREKG VT +K QG CG+CWAFSAV A+E ++ GKL+ LS Q LVDCST+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 190 --NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKG 247
N GC+GG M AF+YII+NKG+ ++A YPY+ C + K AAT KY +LP G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 119
Query: 248 DEHALLQAV-TKQPVSVCVEASGQAFRFYKRGV-LNAECGDNCDHGVAVVGFGTAEEEDG 305
E L +AV K PVSV V+A +F Y+ GV C N +HGV VVG+G + +G
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG---DLNG 176
Query: 306 AKYWLIKNSWGETWGESGYIRILRDEG-LCGIATEASYP 343
+YWL+KNSWG +GE GYIR+ R++G CGIA+ SYP
Sbjct: 177 KEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 215
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 145/219 (66%), Gaps = 10/219 (4%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD- 189
+P S+DWREKG VT +K QG CG+CWAFSAV A+E ++ GKL+ LS Q LVDCST+
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 190 --NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKG 247
N GC+GG M AF+YII+NKG+ ++A YPY+ C + K AAT KY +LP G
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 120
Query: 248 DEHALLQAV-TKQPVSVCVEASGQAFRFYKRGV-LNAECGDNCDHGVAVVGFGTAEEEDG 305
E L +AV K PVSV V+A +F Y+ GV C N +HGV VVG+G + +G
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG---DLNG 177
Query: 306 AKYWLIKNSWGETWGESGYIRILRDEG-LCGIATEASYP 343
+YWL+KNSWG +GE GYIR+ R++G CGIA+ SYP
Sbjct: 178 KEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 216
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 145/219 (66%), Gaps = 10/219 (4%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD- 189
+P S+DWREKG VT +K QG CG+CWAFSAV A+E ++ GKL+ LS Q LVDCST+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 190 --NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKG 247
N GC+GG M AF+YII+NKG+ ++A YPY+ C + K AAT KY +LP G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 119
Query: 248 DEHALLQAV-TKQPVSVCVEASGQAFRFYKRGV-LNAECGDNCDHGVAVVGFGTAEEEDG 305
E L +AV K PVSV V+A +F Y+ GV C N +HGV VVG+G + +G
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG---DLNG 176
Query: 306 AKYWLIKNSWGETWGESGYIRILRDEG-LCGIATEASYP 343
+YWL+KNSWG +GE GYIR+ R++G CGIA+ SYP
Sbjct: 177 KEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 215
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 145/219 (66%), Gaps = 10/219 (4%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD- 189
+P S+DWREKG VT +K QG CG+CWAFSAV A+E ++ GKL+ LS Q LVDCST+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEK 60
Query: 190 --NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKG 247
N GC+GG M AF+YII+NKG+ ++A YPY+ C + K AAT KY +LP G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 119
Query: 248 DEHALLQAV-TKQPVSVCVEASGQAFRFYKRGV-LNAECGDNCDHGVAVVGFGTAEEEDG 305
E L +AV K PVSV V+A +F Y+ GV C N +HGV VVG+G + +G
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG---DLNG 176
Query: 306 AKYWLIKNSWGETWGESGYIRILRDEG-LCGIATEASYP 343
+YWL+KNSWG +GE GYIR+ R++G CGIA+ SYP
Sbjct: 177 KEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 215
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 145/219 (66%), Gaps = 10/219 (4%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD- 189
+P S+DWREKG VT +K QG CG+CWAFSAV A+E ++ GKL+ LS Q LVDCST+
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 190 --NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKG 247
N GC+GG M AF+YII+NKG+ ++A YPY+ C + K AAT KY +LP G
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 120
Query: 248 DEHALLQAV-TKQPVSVCVEASGQAFRFYKRGV-LNAECGDNCDHGVAVVGFGTAEEEDG 305
E L +AV K PVSV V+A +F Y+ GV C N +HGV VVG+G + +G
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG---DLNG 177
Query: 306 AKYWLIKNSWGETWGESGYIRILRDEG-LCGIATEASYP 343
+YWL+KNSWG +GE GYIR+ R++G CGIA+ SYP
Sbjct: 178 KEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 216
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 212 bits (539), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 145/219 (66%), Gaps = 10/219 (4%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD- 189
+P S+DWREKG VT +K QG CG+CWAFSAV A+E ++ GKL+ LS Q LVDCST+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 190 --NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKG 247
N GC+GG M AF+YII+NKG+ ++A YPY+ C + K AAT KY +LP G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCRKYTELPYG 119
Query: 248 DEHALLQAV-TKQPVSVCVEASGQAFRFYKRGV-LNAECGDNCDHGVAVVGFGTAEEEDG 305
E L +AV K PVSV V+A +F Y+ GV C N +HGV VVG+G + +G
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG---DLNG 176
Query: 306 AKYWLIKNSWGETWGESGYIRILRDEG-LCGIATEASYP 343
+YWL+KNSWG +GE GYIR+ R++G CGIA+ SYP
Sbjct: 177 KEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSYP 215
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 210 bits (535), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 112/220 (50%), Positives = 146/220 (66%), Gaps = 9/220 (4%)
Query: 132 PTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD-- 189
P S+DWREKG VT +KNQG CGSCWAFSA A+EG G+LI LSEQ LVDCS
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 190 NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDE 249
N GC+GGLMD AF+Y+ +N GL +E YPY+ + +C K K + A + D+PK E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDAGFVDIPK-QE 119
Query: 250 HALLQAV-TKQPVSVCVEASGQAFRFYKRGV-LNAEC-GDNCDHGVAVVGFG-TAEEEDG 305
AL++AV T P+SV ++A ++F FYK G+ +C ++ DHGV VVG+G + E D
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 306 AKYWLIKNSWGETWGESGYIRILRD-EGLCGIATEASYPV 344
KYWL+KNSWGE WG GY+++ +D CGIA+ ASYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPT 219
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 210 bits (534), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 112/222 (50%), Positives = 147/222 (66%), Gaps = 9/222 (4%)
Query: 130 DVPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD 189
+ P S+DWREKG VT +KNQG CGSCWAFSA A+EG G+LI LSEQ LVDCS
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 190 --NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKG 247
N GC+GGLMD AF+Y+ +N GL +E YPY+ + +C K K + A + D+PK
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIPK- 118
Query: 248 DEHALLQAV-TKQPVSVCVEASGQAFRFYKRGV-LNAEC-GDNCDHGVAVVGFG-TAEEE 303
E AL++AV T P+SV ++A ++F FYK G+ +C ++ DHGV VVG+G + E
Sbjct: 119 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 178
Query: 304 DGAKYWLIKNSWGETWGESGYIRILRD-EGLCGIATEASYPV 344
D KYWL+KNSWGE WG GY+++ +D CGIA+ ASYP
Sbjct: 179 DNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPT 220
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 112/220 (50%), Positives = 146/220 (66%), Gaps = 9/220 (4%)
Query: 132 PTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD-- 189
P S+DWREKG VT +KNQG CGSCWAFSA A+EG G+LI LSEQ LVDCS
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 190 NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDE 249
N GC+GGLMD AF+Y+ +N GL +E YPY+ + +C K K + A + D+PK E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIPK-QE 119
Query: 250 HALLQAV-TKQPVSVCVEASGQAFRFYKRGV-LNAEC-GDNCDHGVAVVGFG-TAEEEDG 305
AL++AV T P+SV ++A ++F FYK G+ +C ++ DHGV VVG+G + E D
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 306 AKYWLIKNSWGETWGESGYIRILRD-EGLCGIATEASYPV 344
KYWL+KNSWGE WG GY+++ +D CGIA+ ASYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPT 219
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 111/219 (50%), Positives = 143/219 (65%), Gaps = 10/219 (4%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD- 189
+P S+DWREKG VT +K QG CG+CWAFSAV A+E ++ GKL+ LS Q LVDCST
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKK 60
Query: 190 --NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKG 247
N GC+GG M AF+YII+NKG+ ++A YPY+ C + AAT KY +LP G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSAYRAATCRKYTELPYG 119
Query: 248 DEHALLQAV-TKQPVSVCVEASGQAFRFYKRGV-LNAECGDNCDHGVAVVGFGTAEEEDG 305
E L +AV K PVSV V+A +F Y+ GV C N +HGV VVG+G + +G
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG---DLNG 176
Query: 306 AKYWLIKNSWGETWGESGYIRILRDEG-LCGIATEASYP 343
+YWL+KNSWG +GE GYIR+ R++G CGIA+ SYP
Sbjct: 177 KEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSYP 215
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 111/219 (50%), Positives = 144/219 (65%), Gaps = 10/219 (4%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD- 189
+P S+DWREKG VT +K QG CG+ WAFSAV A+E ++ GKL+ LS Q LVDCST+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 190 --NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKG 247
N GC+GG M AF+YII+NKG+ ++A YPY+ C + K AAT KY +LP G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 119
Query: 248 DEHALLQAV-TKQPVSVCVEASGQAFRFYKRGV-LNAECGDNCDHGVAVVGFGTAEEEDG 305
E L +AV K PVSV V+A +F Y+ GV C N +HGV VVG+G + +G
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG---DLNG 176
Query: 306 AKYWLIKNSWGETWGESGYIRILRDEG-LCGIATEASYP 343
+YWL+KNSWG +GE GYIR+ R++G CGIA+ SYP
Sbjct: 177 KEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 215
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 209 bits (531), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 111/219 (50%), Positives = 144/219 (65%), Gaps = 10/219 (4%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD- 189
+P S+DWREKG VT +K QG CG+ WAFSAV A+E ++ GKL+ LS Q LVDCST+
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 190 --NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKG 247
N GC+GG M AF+YII+NKG+ ++A YPY+ C + K AAT KY +LP G
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 120
Query: 248 DEHALLQAV-TKQPVSVCVEASGQAFRFYKRGV-LNAECGDNCDHGVAVVGFGTAEEEDG 305
E L +AV K PVSV V+A +F Y+ GV C N +HGV VVG+G + +G
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG---DLNG 177
Query: 306 AKYWLIKNSWGETWGESGYIRILRDEG-LCGIATEASYP 343
+YWL+KNSWG +GE GYIR+ R++G CGIA+ SYP
Sbjct: 178 KEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 216
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 208 bits (530), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 111/219 (50%), Positives = 144/219 (65%), Gaps = 10/219 (4%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD- 189
+P S+DWREKG VT +K QG CG+ WAFSAV A+E ++ GKL+ LS Q LVDCST+
Sbjct: 3 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 62
Query: 190 --NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKG 247
N GC+GG M AF+YII+NKG+ ++A YPY+ C + K AAT KY +LP G
Sbjct: 63 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 121
Query: 248 DEHALLQAV-TKQPVSVCVEASGQAFRFYKRGV-LNAECGDNCDHGVAVVGFGTAEEEDG 305
E L +AV K PVSV V+A +F Y+ GV C N +HGV VVG+G + +G
Sbjct: 122 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG---DLNG 178
Query: 306 AKYWLIKNSWGETWGESGYIRILRDEG-LCGIATEASYP 343
+YWL+KNSWG +GE GYIR+ R++G CGIA+ SYP
Sbjct: 179 KEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 217
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 208 bits (530), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 102/216 (47%), Positives = 130/216 (60%), Gaps = 8/216 (3%)
Query: 132 PTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDNN 191
P SIDWR KGAVT +KNQG CGS WAFS +A VEGI +I G L+ELSEQ+LVDC +
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSY 61
Query: 192 GCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEHA 251
GC GG + +Y+ N G+ T YPYQ +Q C + I Y+ +P E +
Sbjct: 62 GCKGGYQTTSLQYVANN-GVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSNXETS 120
Query: 252 LLQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGAKYWLI 311
L A+ QP+SV VEA G+ F+ YK GV + CG DH V VG+GT+ DG Y +I
Sbjct: 121 FLGALANQPLSVLVEAGGKPFQLYKSGVFDGPCGTKLDHAVTAVGYGTS---DGKNYIII 177
Query: 312 KNSWGETWGESGYIRILR----DEGLCGIATEASYP 343
KNSWG WGE GY+R+ R +G CG+ + YP
Sbjct: 178 KNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYP 213
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 208 bits (530), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 111/219 (50%), Positives = 144/219 (65%), Gaps = 10/219 (4%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD- 189
+P S+DWREKG VT +K QG CG+ WAFSAV A+E ++ GKL+ LS Q LVDCST+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 190 --NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKG 247
N GC+GG M AF+YII+NKG+ ++A YPY+ C + K AAT KY +LP G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDLKC-QYDSKYRAATCSKYTELPYG 119
Query: 248 DEHALLQAV-TKQPVSVCVEASGQAFRFYKRGV-LNAECGDNCDHGVAVVGFGTAEEEDG 305
E L +AV K PVSV V+A +F Y+ GV C N +HGV VVG+G + +G
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG---DLNG 176
Query: 306 AKYWLIKNSWGETWGESGYIRILRDEG-LCGIATEASYP 343
+YWL+KNSWG +GE GYIR+ R++G CGIA+ SYP
Sbjct: 177 KEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 215
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 207 bits (527), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 111/222 (50%), Positives = 146/222 (65%), Gaps = 9/222 (4%)
Query: 130 DVPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD 189
+ P S+DWREKG VT +KNQG CGS WAFSA A+EG G+LI LSEQ LVDCS
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 190 --NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKG 247
N GC+GGLMD AF+Y+ +N GL +E YPY+ + +C K K + A + D+PK
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIPK- 118
Query: 248 DEHALLQAV-TKQPVSVCVEASGQAFRFYKRGV-LNAEC-GDNCDHGVAVVGFG-TAEEE 303
E AL++AV T P+SV ++A ++F FYK G+ +C ++ DHGV VVG+G + E
Sbjct: 119 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 178
Query: 304 DGAKYWLIKNSWGETWGESGYIRILRD-EGLCGIATEASYPV 344
D KYWL+KNSWGE WG GY+++ +D CGIA+ ASYP
Sbjct: 179 DNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPT 220
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 206 bits (525), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/220 (50%), Positives = 145/220 (65%), Gaps = 9/220 (4%)
Query: 132 PTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD-- 189
P S+DWREKG VT +KNQG CGS WAFSA A+EG G+LI LSEQ LVDCS
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 190 NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDE 249
N GC+GGLMD AF+Y+ +N GL +E YPY+ + +C K K + A + D+PK E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIPK-QE 119
Query: 250 HALLQAV-TKQPVSVCVEASGQAFRFYKRGV-LNAEC-GDNCDHGVAVVGFG-TAEEEDG 305
AL++AV T P+SV ++A ++F FYK G+ +C ++ DHGV VVG+G + E D
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 306 AKYWLIKNSWGETWGESGYIRILRD-EGLCGIATEASYPV 344
KYWL+KNSWGE WG GY+++ +D CGIA+ ASYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPT 219
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 206 bits (525), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/220 (50%), Positives = 145/220 (65%), Gaps = 9/220 (4%)
Query: 132 PTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD-- 189
P S+DWREKG VT +KNQG CGS WAFSA A+EG G+LI LSEQ LVDCS
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 190 NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDE 249
N GC+GGLMD AF+Y+ +N GL +E YPY+ + +C K K + A + D+PK E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDAGFVDIPK-QE 119
Query: 250 HALLQAV-TKQPVSVCVEASGQAFRFYKRGV-LNAEC-GDNCDHGVAVVGFG-TAEEEDG 305
AL++AV T P+SV ++A ++F FYK G+ +C ++ DHGV VVG+G + E D
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDD 179
Query: 306 AKYWLIKNSWGETWGESGYIRILRD-EGLCGIATEASYPV 344
KYWL+KNSWGE WG GY+++ +D CGIA+ ASYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPT 219
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 206 bits (524), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/220 (50%), Positives = 145/220 (65%), Gaps = 9/220 (4%)
Query: 132 PTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD-- 189
P S+DWREKG VT +KNQG CGS WAFSA A+EG G+LI LSEQ LVDCS
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 190 NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDE 249
N GC+GGLMD AF+Y+ +N GL +E YPY+ + +C K K + A + D+PK E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIPK-QE 119
Query: 250 HALLQAV-TKQPVSVCVEASGQAFRFYKRGV-LNAEC-GDNCDHGVAVVGFG-TAEEEDG 305
AL++AV T P+SV ++A ++F FYK G+ +C ++ DHGV VVG+G + E D
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 306 AKYWLIKNSWGETWGESGYIRILRD-EGLCGIATEASYPV 344
KYWL+KNSWGE WG GY+++ +D CGIA+ ASYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPT 219
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 205 bits (521), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 105/217 (48%), Positives = 144/217 (66%), Gaps = 8/217 (3%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDN 190
P S+D+REKG VT +KNQG CGSCWAFS+V A+EG + GKL+ LS Q LVDC ++N
Sbjct: 1 APDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEN 60
Query: 191 NGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEH 250
+GC GG M AF+Y+ +N+G+ +E YPY ++ +C AA G Y ++P+G+E
Sbjct: 61 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRG-YREIPEGNEK 119
Query: 251 ALLQAVTK-QPVSVCVEASGQAFRFYKRGVLNAEC--GDNCDHGVAVVGFGTAEEEDGAK 307
AL +AV + PVSV ++AS +F+FY +GV E DN +H V VG+G E G K
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG---ESKGNK 176
Query: 308 YWLIKNSWGETWGESGYIRILRDE-GLCGIATEASYP 343
+W+IKNSWGE WG GYI++ R++ CGIA AS+P
Sbjct: 177 HWIIKNSWGENWGMGGYIKMARNKNNACGIANLASFP 213
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 204 bits (520), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 108/220 (49%), Positives = 140/220 (63%), Gaps = 8/220 (3%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD- 189
+P S+DWR+KG VT +KNQ CGSCWAFSA A+EG GKL+ LSEQ LVDCS
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 190 -NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGD 248
N GC+GG M +AF+Y+ EN GL +E YPY C + E + A G + + G
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVAQDTG-FTVVAPGK 119
Query: 249 EHALLQAV-TKQPVSVCVEASGQAFRFYKRGV-LNAECGD-NCDHGVAVVGFG-TAEEED 304
E AL++AV T P+SV ++A +F+FYK G+ +C N DHGV VVG+G D
Sbjct: 120 EKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSD 179
Query: 305 GAKYWLIKNSWGETWGESGYIRILRDE-GLCGIATEASYP 343
+KYWL+KNSWG WG +GY++I +D+ CGIAT ASYP
Sbjct: 180 NSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYP 219
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 202 bits (515), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 123/323 (38%), Positives = 178/323 (55%), Gaps = 21/323 (6%)
Query: 32 SMHEPSIVEKHEQWMAQHGRTYKDELEKAMRLTIFKQNLEYIEKAN---KEGNRTYKLGT 88
S+ + E+ Q+ H ++Y +E+ R IFK N+ I + N ++G TY
Sbjct: 17 SLPKSLFQEQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAM 76
Query: 89 NEFSDLTNEEFRASYTGYNXXXXXXXXXXXXXXTFKY-QNVTDVPTSIDWREKGAVTHIK 147
N+F D++ EEF A Y Y + + S+DWR AV+ +K
Sbjct: 77 NQFGDMSKEEFLA----YVNRGKAQKPKHPENLRMPYVSSKKPLAASVDWRSN-AVSEVK 131
Query: 148 NQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD--NNGCSGGLMDKAFEYI 205
+QG CGS W+FS AVEG + G+L LSEQ L+DCS+ N GC GG MD AF Y
Sbjct: 132 DQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSY- 190
Query: 206 IENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEHALLQAVTKQ-PVSVC 264
I + G+ +E+ YPY+ + C + + T+ Y DLP GDE++L AV + PV+V
Sbjct: 191 IHDYGIMSESAYPYEAQGDYC-RFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVA 249
Query: 265 VEASGQAFRFYKRGVLNAECGDNCD--HGVAVVGFGTAEEEDGAKYWLIKNSWGETWGES 322
++A+ + +FY G+ + + D HGV VVG+G+ ++G YW++KNSWG WGES
Sbjct: 250 IDATDE-LQFYSGGLFYDQTCNQSDLNHGVLVVGYGS---DNGQDYWILKNSWGSGWGES 305
Query: 323 GYIRILRDEG-LCGIATEASYPV 344
GY R +R+ G CGIAT ASYP
Sbjct: 306 GYWRQVRNYGNNCGIATAASYPA 328
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 201 bits (512), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 104/217 (47%), Positives = 142/217 (65%), Gaps = 8/217 (3%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDN 190
P SID+R+KG VT +KNQG CGSCWAFS+V A+EG + GKL+ LS Q LVDC ++N
Sbjct: 1 TPDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEN 60
Query: 191 NGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEH 250
+GC GG M AF+Y+ N+G+ +E YPY + +C AA G Y ++P+G+E
Sbjct: 61 DGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESCMYNPTGKAAKCRG-YREIPEGNEK 119
Query: 251 ALLQAVTK-QPVSVCVEASGQAFRFYKRGVLNAE--CGDNCDHGVAVVGFGTAEEEDGAK 307
AL +AV + PVSV ++AS +F+FY +GV E DN +H V VG+G + G K
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYGI---QKGNK 176
Query: 308 YWLIKNSWGETWGESGYIRILRDE-GLCGIATEASYP 343
+W+IKNSWGE+WG GYI + R++ CGIA AS+P
Sbjct: 177 HWIIKNSWGESWGNKGYILMARNKNNACGIANLASFP 213
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 201 bits (512), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 103/216 (47%), Positives = 143/216 (66%), Gaps = 8/216 (3%)
Query: 132 PTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDNN 191
P S+D+R+KG VT +KNQG CGSCWAFS+V A+EG + GKL+ LS Q LVDC ++N+
Sbjct: 4 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 63
Query: 192 GCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEHA 251
GC GG M AF+Y+ +N+G+ +E YPY ++ +C AA G Y ++P+G+E A
Sbjct: 64 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRG-YREIPEGNEKA 122
Query: 252 LLQAVTK-QPVSVCVEASGQAFRFYKRGVLNAEC--GDNCDHGVAVVGFGTAEEEDGAKY 308
L +AV + PVSV ++AS +F+FY +GV E DN +H V VG+G + G K+
Sbjct: 123 LKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGI---QKGNKH 179
Query: 309 WLIKNSWGETWGESGYIRILRDE-GLCGIATEASYP 343
W+IKNSWGE WG GYI + R++ CGIA AS+P
Sbjct: 180 WIIKNSWGENWGNKGYILMARNKNNACGIANLASFP 215
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 201 bits (512), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 103/216 (47%), Positives = 143/216 (66%), Gaps = 8/216 (3%)
Query: 132 PTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDNN 191
P S+D+R+KG VT +KNQG CGSCWAFS+V A+EG + GKL+ LS Q LVDC ++N+
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 60
Query: 192 GCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEHA 251
GC GG M AF+Y+ +N+G+ +E YPY ++ +C AA G Y ++P+G+E A
Sbjct: 61 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRG-YREIPEGNEKA 119
Query: 252 LLQAVTK-QPVSVCVEASGQAFRFYKRGVLNAEC--GDNCDHGVAVVGFGTAEEEDGAKY 308
L +AV + PVSV ++AS +F+FY +GV E DN +H V VG+G + G K+
Sbjct: 120 LKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGI---QKGNKH 176
Query: 309 WLIKNSWGETWGESGYIRILRDE-GLCGIATEASYP 343
W+IKNSWGE WG GYI + R++ CGIA AS+P
Sbjct: 177 WIIKNSWGENWGNKGYILMARNKNNACGIANLASFP 212
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 201 bits (512), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 103/216 (47%), Positives = 143/216 (66%), Gaps = 8/216 (3%)
Query: 132 PTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDNN 191
P S+D+R+KG VT +KNQG CGSCWAFS+V A+EG + GKL+ LS Q LVDC ++N+
Sbjct: 2 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 192 GCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEHA 251
GC GG M AF+Y+ +N+G+ +E YPY ++ +C AA G Y ++P+G+E A
Sbjct: 62 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRG-YREIPEGNEKA 120
Query: 252 LLQAVTK-QPVSVCVEASGQAFRFYKRGVLNAEC--GDNCDHGVAVVGFGTAEEEDGAKY 308
L +AV + PVSV ++AS +F+FY +GV E DN +H V VG+G + G K+
Sbjct: 121 LKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGI---QKGNKH 177
Query: 309 WLIKNSWGETWGESGYIRILRDE-GLCGIATEASYP 343
W+IKNSWGE WG GYI + R++ CGIA AS+P
Sbjct: 178 WIIKNSWGENWGNKGYILMARNKNNACGIANLASFP 213
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 201 bits (511), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 139/220 (63%), Gaps = 8/220 (3%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD- 189
+P S+DWR+KG VT +KNQ CGS WAFSA A+EG GKL+ LSEQ LVDCS
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 190 -NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGD 248
N GC+GG M +AF+Y+ EN GL +E YPY C + E + A G + + G
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVAQDTG-FTVVAPGK 119
Query: 249 EHALLQAV-TKQPVSVCVEASGQAFRFYKRGV-LNAECGD-NCDHGVAVVGFG-TAEEED 304
E AL++AV T P+SV ++A +F+FYK G+ +C N DHGV VVG+G D
Sbjct: 120 EKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSD 179
Query: 305 GAKYWLIKNSWGETWGESGYIRILRDE-GLCGIATEASYP 343
+KYWL+KNSWG WG +GY++I +D+ CGIAT ASYP
Sbjct: 180 NSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYP 219
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/214 (47%), Positives = 142/214 (66%), Gaps = 8/214 (3%)
Query: 134 SIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDNNGC 193
S+D+R+KG VT +KNQG CGSCWAFS+V A+EG + GKL+ LS Q LVDC ++N+GC
Sbjct: 2 SVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGC 61
Query: 194 SGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEHALL 253
GG M AF+Y+ +N+G+ +E YPY ++ +C AA G Y ++P+G+E AL
Sbjct: 62 GGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRG-YREIPEGNEKALK 120
Query: 254 QAVTK-QPVSVCVEASGQAFRFYKRGVLNAEC--GDNCDHGVAVVGFGTAEEEDGAKYWL 310
+AV + PVSV ++AS +F+FY +GV E DN +H V VG+G + G K+W+
Sbjct: 121 RAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGI---QKGNKHWI 177
Query: 311 IKNSWGETWGESGYIRILRDE-GLCGIATEASYP 343
IKNSWGE WG GYI + R++ CGIA AS+P
Sbjct: 178 IKNSWGENWGNKGYILMARNKNNACGIANLASFP 211
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 198 bits (503), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 132/217 (60%), Gaps = 8/217 (3%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDN 190
+P ++DWR+KGAVT +++QG CGSCWAFSAVA VEGI +I GKL+ELSEQ+LVDC +
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 191 NGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEH 250
+GC GG A EY+ +N G+ + YPY+ +QGTC ++ + +E
Sbjct: 61 HGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEG 119
Query: 251 ALLQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGAKYWL 310
LL A+ KQPVSV VE+ G+ F+ YK G+ CG DH V V + G Y L
Sbjct: 120 NLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVDHAVTAV---GYGKSGGKGYIL 176
Query: 311 IKNSWGETWGESGYIRILR----DEGLCGIATEASYP 343
IKNSWG WGE GYIRI R G+CG+ + YP
Sbjct: 177 IKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYP 213
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 197 bits (502), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 139/221 (62%), Gaps = 7/221 (3%)
Query: 129 TDVPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCST 188
+++P +DWR +G VT +K+Q CGSCWAFS A+EG GKL+ LSEQ+L+DCS
Sbjct: 5 SELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSR 64
Query: 189 --DNNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPK 246
N CSGG M+ AF+Y++++ G+ +E YPY C Q + +G ++D+P+
Sbjct: 65 AEGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDEECRAQSCEKVVKILG-FKDVPR 123
Query: 247 GDEHALLQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGA 306
E A+ A+ K PVS+ +EA F+FY GV +A CG + DHGV +VG+GT ++E
Sbjct: 124 RSEAAMKAALAKSPVSIAIEADQMPFQFYHEGVFDASCGTDLDHGVLLVGYGT-DKESKK 182
Query: 307 KYWLIKNSWGETWGESGYIRILR---DEGLCGIATEASYPV 344
+W++KNSWG WG GY+ + +EG CG+ +AS+PV
Sbjct: 183 DFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLLLDASFPV 223
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 105/221 (47%), Positives = 134/221 (60%), Gaps = 14/221 (6%)
Query: 132 PTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDNN 191
P SIDWR+KGAVT +K+QG CG CWAF A A+EGI IT G+LI +SEQQ+VDC T
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61
Query: 192 GCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEHA 251
GG D AF ++I N G+A++A+YPY GTCD K AA I Y ++P A
Sbjct: 62 XXXGGDADDAFRWVITNGGIASDANYPYTGVDGTCDLNKP--IAARIDGYTNVPN-SSSA 118
Query: 252 LLQAVTKQPVSVCVEASGQAFRFYK-RGVL-NAECGDN---CDHGVAVVGFGTAEEEDGA 306
LL AV KQPVSV + S +F+ Y G+ + C D+ DH V +VG+G+ A
Sbjct: 119 LLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTN--A 176
Query: 307 KYWLIKNSWGETWGESGYIRILRD----EGLCGIATEASYP 343
YW++KNSWG WG GYI I R+ +G+C I SYP
Sbjct: 177 DYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYP 217
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 125/333 (37%), Positives = 172/333 (51%), Gaps = 28/333 (8%)
Query: 28 VSGRSMHEPSIVEKHEQWMAQHGRTYKDELEKAMRLTIFKQNLEYIEKAN---KEGNRTY 84
+ G ++ + EK E + + R+Y + E+ R IF++ LE E+ N ++G +Y
Sbjct: 8 LEGSALPSTFVAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSY 67
Query: 85 KLGTNEFSDLTNEEFRASYTGY--------NXXXXXXXXXXXXXXTFKYQNVTDVPTSID 136
LG N F+D+T EE +A G N + +Y P S D
Sbjct: 68 TLGVNLFTDMTPEEMKAYTHGLIMPADLHKNGIPIKTREDLGLNASVRY------PASFD 121
Query: 137 WREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIE--LSEQQLVDCSTDNNGCS 194
WR++G V+ +KNQG CGS WAFS+ A+E +I G + +SEQQLVDC + GCS
Sbjct: 122 WRDQGMVSPVKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNALGCS 181
Query: 195 GGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEHALLQ 254
GG M+ AF Y+ +N G+ +E YPY+ G C + AA G Y L DE+ L
Sbjct: 182 GGWMNDAFTYVAQNGGIDSEGAYPYEMADGNCHYDPNQVAARLSG-YVYLSGPDENMLAD 240
Query: 255 AV-TKQPVSVCVEASGQAFRFYKRGV-LNAECGDN-CDHGVAVVGFGTAEEEDGAKYWLI 311
V TK PV+V +A F Y GV N C N H V +VG+G E+G YWL+
Sbjct: 241 MVATKGPVAVAFDAD-DPFGSYSGGVYYNPTCETNKFTHAVLIVGYGN---ENGQDYWLV 296
Query: 312 KNSWGETWGESGYIRILRD-EGLCGIATEASYP 343
KNSWG+ WG GY +I R+ CGIA AS P
Sbjct: 297 KNSWGDGWGLDGYFKIARNANNHCGIAGVASVP 329
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 100/217 (46%), Positives = 132/217 (60%), Gaps = 8/217 (3%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDN 190
+P ++DWR+KGAVT +++QG CGSCWAFSAVA VEGI +I GKL+ELSEQ+LVDC +
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 191 NGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEH 250
+GC GG A EY+ +N G+ + YPY+ +QGTC ++ + +E
Sbjct: 61 HGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEG 119
Query: 251 ALLQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGAKYWL 310
LL A+ KQPVSV VE+ G+ F+ YK G+ CG +H V V + G Y L
Sbjct: 120 NLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVEHAVTAV---GYGKSGGKGYIL 176
Query: 311 IKNSWGETWGESGYIRILR----DEGLCGIATEASYP 343
IKNSWG WGE GYIRI R G+CG+ + YP
Sbjct: 177 IKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYP 213
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 139/216 (64%), Gaps = 8/216 (3%)
Query: 132 PTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDNN 191
P SID+R+KG VT +KNQG CGSCWAFS+V A+EG + G L+ L+ Q LVDC ++N+
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSEND 61
Query: 192 GCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEHA 251
GC GG M AF+Y+ N+G+ +E YPY + +C AA G Y ++P+G+E A
Sbjct: 62 GCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESCMYNPTGKAAKCRG-YREIPEGNEAA 120
Query: 252 LLQAVTK-QPVSVCVEASGQAFRFYKRGVLNAE--CGDNCDHGVAVVGFGTAEEEDGAKY 308
L +AV PVSV ++AS +F+FY GV E D +H V VG+G + G K+
Sbjct: 121 LKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYGI---QAGNKH 177
Query: 309 WLIKNSWGETWGESGYIRILRDE-GLCGIATEASYP 343
W+IKNSWGE+WG +GYI + R++ CGIA AS+P
Sbjct: 178 WIIKNSWGESWGNAGYILMARNKNNACGIANLASFP 213
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 192 bits (487), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 169/313 (53%), Gaps = 22/313 (7%)
Query: 43 EQWMAQHGRTYKDELEKAMRLTIFKQNLEYIEKANKE---GNRTYKLGTNEFSDLTNEEF 99
QW + + Y + + R I+++N+++I++ N G TY LG N+F+D+T EEF
Sbjct: 6 HQWKRMYNKEY-NGADDQHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEF 64
Query: 100 RASYTGYNXXXXXXXXXXXXXXTFKYQ-NVTDVPTSIDWREKGAVTHIKNQGHCGSCWAF 158
+A Y Y+ N VP IDWRE G VT +K+QG+CGS WAF
Sbjct: 65 KAKYL-----TEMSRASDILSHGVPYEANNRAVPDKIDWRESGYVTEVKDQGNCGSGWAF 119
Query: 159 SAVAAVEGITQITGGKLIELSEQQLVDCSTD--NNGCSGGLMDKAFEYIIENKGLATEAD 216
S +EG I SEQQLVDCS NNGC GGLM+ A++Y ++ GL TE+
Sbjct: 120 STTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQY-LKQFGLETESS 178
Query: 217 YPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEHALLQAVTKQ-PVSVCVEASGQAFRFY 275
YPY +G C K+ A G Y + G E L V + P +V V+ F Y
Sbjct: 179 YPYTAVEGQCRYNKQLGVAKVTGFYT-VHSGSEVELKNLVGAEGPAAVAVDVESD-FMMY 236
Query: 276 KRGVLNAE-CGD-NCDHGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRILRDEG- 332
+ G+ ++ C +H V VG+GT + G YW++KNSWG +WGE GYIR++R+ G
Sbjct: 237 RSGIYQSQTCSPLRVNHAVLAVGYGT---QGGTDYWIVKNSWGLSWGERGYIRMVRNRGN 293
Query: 333 LCGIATEASYPVA 345
+CGIA+ AS P+
Sbjct: 294 MCGIASLASLPMV 306
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 191 bits (486), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 141/218 (64%), Gaps = 10/218 (4%)
Query: 132 PTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD-- 189
P S+DWREKG VT +KNQG CG+ +AFSA A+EG G+LI LSEQ LVDCS
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 190 NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDE 249
N GC+GGLMD AF+Y+ +N GL +E YPY+ + +C + + A +G + D+PK E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDVG-FVDIPK-QE 119
Query: 250 HALLQAV-TKQPVSVCVEASGQAFRFYKRGVL--NAECGDNCDHGVAVVGFGTAEEEDGA 306
AL++AV T P+SV ++A ++F FYK G+ + + +H + VVG+G +
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSSSSLNHAMLVVGYGFI--SNNQ 177
Query: 307 KYWLIKNSWGETWGESGYIRILRD-EGLCGIATEASYP 343
KYWL+KNSWGE WG GY+++ +D CGIA+ ASYP
Sbjct: 178 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 215
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 131/218 (60%), Gaps = 12/218 (5%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDN 190
+P +DWR+KGAVT +KNQG CGSCWAFSAV +EGI +I G L E SEQ+L+DC +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 191 NGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEH 250
GC+GG A + ++ G+ YPY+ Q C +++ AA + +E
Sbjct: 61 YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEG 119
Query: 251 ALLQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGAKYWL 310
ALL ++ QPVSV +EA+G+ F+ Y+ G+ CG+ DH VA VG+ G Y L
Sbjct: 120 ALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-------GPNYIL 172
Query: 311 IKNSWGETWGESGYIRILR----DEGLCGIATEASYPV 344
IKNSWG WGE+GYIRI R G+CG+ T + YPV
Sbjct: 173 IKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 100/217 (46%), Positives = 134/217 (61%), Gaps = 12/217 (5%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDN 190
+PTSIDWR+KGAVT ++NQG CGSCW FS+VAAVEGI +I G+L+ LSEQ+L+DC +
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRS 60
Query: 191 NGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEH 250
GC GG A +Y + N G+ YPY+ Q C + K +P+ +E
Sbjct: 61 YGCRGGFPLYALQY-VANSGIHLRQYYPYEGVQRQCRASQAKGPKVKTDGVGRVPRNNEQ 119
Query: 251 ALLQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGAKYWL 310
AL+Q + QPVS+ VEA G+AF+ Y+ G+ CG + DH VA VG+G Y L
Sbjct: 120 ALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAGPCGTSIDHAVAAVGYGN-------DYIL 172
Query: 311 IKNSWGETWGESGYIRILR----DEGLCGIATEASYP 343
IKNSWG WGE GYIRI R +G CG+ +++ +P
Sbjct: 173 IKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFP 209
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 131/218 (60%), Gaps = 12/218 (5%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDN 190
+P +DWR+KGAVT +KNQG CGSCWAFSAV +EGI +I G L + SEQ+L+DC +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 191 NGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEH 250
GC+GG A + ++ G+ YPY+ Q C +++ AA + ++
Sbjct: 61 YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQG 119
Query: 251 ALLQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGAKYWL 310
ALL ++ QPVSV ++A+G+ F+ Y+ G+ CG+ DH VA VG+ G Y L
Sbjct: 120 ALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-------GPNYIL 172
Query: 311 IKNSWGETWGESGYIRILR----DEGLCGIATEASYPV 344
IKNSWG WGE+GYIRI R G+CG+ T + YPV
Sbjct: 173 IKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 130/218 (59%), Gaps = 12/218 (5%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDN 190
+P +DWR+KGAVT +KNQG CGS WAFSAV +EGI +I G L E SEQ+L+DC +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 191 NGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEH 250
GC+GG A + ++ G+ YPY+ Q C +++ AA + +E
Sbjct: 61 YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEG 119
Query: 251 ALLQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGAKYWL 310
ALL ++ QPVSV +EA+G+ F+ Y+ G+ CG+ DH VA VG+ G Y L
Sbjct: 120 ALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-------GPNYIL 172
Query: 311 IKNSWGETWGESGYIRILR----DEGLCGIATEASYPV 344
IKNSWG WGE+GYIRI R G+CG+ T + YPV
Sbjct: 173 IKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 130/217 (59%), Gaps = 12/217 (5%)
Query: 132 PTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDNN 191
P +DWR+KGAVT +KNQG CGSCWAFSAV +EGI +I G L + SEQ+L+DC +
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSY 61
Query: 192 GCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEHA 251
GC+GG A + ++ G+ YPY+ Q C +++ AA + ++ A
Sbjct: 62 GCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQGA 120
Query: 252 LLQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGAKYWLI 311
LL ++ QPVSV ++A+G+ F+ Y+ G+ CG+ DH VA VG+ G Y LI
Sbjct: 121 LLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-------GPNYILI 173
Query: 312 KNSWGETWGESGYIRILR----DEGLCGIATEASYPV 344
KNSWG WGE+GYIRI R G+CG+ T + YPV
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 185 bits (469), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 95/218 (43%), Positives = 130/218 (59%), Gaps = 12/218 (5%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDN 190
+P +DWR+KGAVT +KNQG CGS WAFSAV +EGI +I G L + SEQ+L+DC +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 191 NGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEH 250
GC+GG A + ++ G+ YPY+ Q C +++ AA + +E
Sbjct: 61 YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEG 119
Query: 251 ALLQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGAKYWL 310
ALL ++ QPVSV +EA+G+ F+ Y+ G+ CG+ DH VA VG+ G Y L
Sbjct: 120 ALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-------GPNYIL 172
Query: 311 IKNSWGETWGESGYIRILR----DEGLCGIATEASYPV 344
IKNSWG WGE+GYIRI R G+CG+ T + YPV
Sbjct: 173 IKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 184 bits (466), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 136/223 (60%), Gaps = 13/223 (5%)
Query: 132 PTSIDWREKGA-VTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCST-- 188
P S+DWR+KG V+ +KNQG CGSCW FS A+E I GK++ L+EQQLVDC+
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 189 DNNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGD 248
+N+GC GGL +AFEYI NKG+ E YPY+ + C Q +K A A + ++ D
Sbjct: 62 NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDK-AIAFVKDVANITMND 120
Query: 249 EHALLQAVT-KQPVSVCVEASGQAFRFYKRGVLNA----ECGDNCDHGVAVVGFGTAEEE 303
E A+++AV PVS E + F Y++G+ ++ + D +H V VG+G EE
Sbjct: 121 EEAMVEAVALYNPVSFAFEVTND-FLMYRKGIYSSTSCHKTPDKVNHAVLAVGYG---EE 176
Query: 304 DGAKYWLIKNSWGETWGESGYIRILRDEGLCGIATEASYPVAM 346
+G YW++KNSWG WG +GY I R + +CG+A ASYP+ +
Sbjct: 177 NGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASYPIPL 219
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 184 bits (466), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 128/218 (58%), Gaps = 8/218 (3%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDN 190
+P S+DWR KGAVT +K+QG+C SCWAFS VA VEGI +I G L+ELSEQ+LVDC +
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQS 60
Query: 191 NGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEH 250
GC+ G + +Y+ +N G+ A YPY +Q TC + + +E
Sbjct: 61 YGCNRGYQSTSLQYVAQN-GIHLRAKYPYIAKQQTCRANQVGGPKVKTNGVGRVQSNNEG 119
Query: 251 ALLQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGAKYWL 310
+LL A+ QPVSV VE++G+ F+ YK G+ CG DH V V + G Y L
Sbjct: 120 SLLNAIAHQPVSVVVESAGRDFQNYKGGIFEGSCGTKVDHAVTAV---GYGKSGGKGYIL 176
Query: 311 IKNSWGETWGESGYIRILR----DEGLCGIATEASYPV 344
IKNSWG WGE+GYIRI R G+CG+ + YP+
Sbjct: 177 IKNSWGPGWGENGYIRIRRASGNSPGVCGVYRSSYYPI 214
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 130/218 (59%), Gaps = 12/218 (5%)
Query: 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDN 190
+P +DWR+KGAVT +KNQG CGS WAFSAV +EGI +I G L + SEQ+L+DC +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 191 NGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEH 250
GC+GG A + ++ G+ YPY+ Q C +++ AA + ++
Sbjct: 61 YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQG 119
Query: 251 ALLQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGAKYWL 310
ALL ++ QPVSV ++A+G+ F+ Y+ G+ CG+ DH VA VG+ G Y L
Sbjct: 120 ALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-------GPNYIL 172
Query: 311 IKNSWGETWGESGYIRILR----DEGLCGIATEASYPV 344
IKNSWG WGE+GYIRI R G+CG+ T + YPV
Sbjct: 173 IKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/209 (44%), Positives = 125/209 (59%), Gaps = 13/209 (6%)
Query: 132 PTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDNN 191
P ++DWREKGAVT +K+QG CGSCWAFS + +EG Q+ G L+ LSEQ LV C T +
Sbjct: 2 PAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDTIDF 61
Query: 192 GCSGGLMDKAFEYIIENKG--LATEADYPY---QQEQGTCDKQKEKAAAATIGKYEDLPK 246
GC GGLMD AF +I+ + G + TEA YPY EQ C + AA I + DLP+
Sbjct: 62 GCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAA-ITDHVDLPQ 120
Query: 247 GDEHALLQAVTKQ-PVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDG 305
DE A+ + + P+++ V+A+ +F Y G+L + + DHGV +VG+ A
Sbjct: 121 -DEDAIAAYLAENGPLAIAVDAT--SFMDYNGGILTSCTSEQLDHGVLLVGYNDASNP-- 175
Query: 306 AKYWLIKNSWGETWGESGYIRILRDEGLC 334
YW+IKNSW WGE GYIRI + C
Sbjct: 176 -PYWIIKNSWSNMWGEDGYIRIEKGTNQC 203
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 171 bits (434), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 98/232 (42%), Positives = 134/232 (57%), Gaps = 26/232 (11%)
Query: 130 DVPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD 189
D P S DW +KG +T +K QG CGS WAFSA A+E I G L+ LSEQ+L+DC +
Sbjct: 1 DAPESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDE 60
Query: 190 NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKY-------E 242
+ GC G ++FE+++++ G+A+EADYPY+ G C K E TI Y E
Sbjct: 61 SEGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGKC-KANEIQDKVTIDNYGVQILSNE 119
Query: 243 DLPKGDEHALLQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDNC------DHGVAVVG 296
E +L V +QP+SV ++A + F FY G+ + G NC +H V +VG
Sbjct: 120 STESEAESSLQSFVLEQPISVSIDA--KDFHFYSGGIYD---GGNCSSPYGINHFVLIVG 174
Query: 297 FGTAEEEDGAKYWLIKNSWGETWGESGYIRILRDE----GLCGIATEASYPV 344
+G+ EDG YW+ KNSWGE WG GYIRI R+ G+CG+ ASYP+
Sbjct: 175 YGS---EDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPI 223
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 125/220 (56%), Gaps = 14/220 (6%)
Query: 136 DWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDNNGCSG 195
DWR VT +K+Q +CGSCWAFS++ +VE I KLI LSEQ+LVDCS N GC+G
Sbjct: 23 DWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGCNG 82
Query: 196 GLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEHALLQA 255
GL++ AFE +IE G+ + DYPY + I Y +P L+
Sbjct: 83 GLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPDNKLKEALRF 142
Query: 256 VTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAE-----EEDGAK--Y 308
+ P+S+ V S F FYK G+ + ECGD +H V +VGFG E + G K Y
Sbjct: 143 LG--PISISVAVS-DDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGEKHYY 199
Query: 309 WLIKNSWGETWGESGYIRILRDE-GL---CGIATEASYPV 344
++IKNSWG+ WGE G+I I DE GL CG+ T+A P+
Sbjct: 200 YIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPL 239
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 164 bits (414), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 121/217 (55%), Gaps = 9/217 (4%)
Query: 132 PTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDNN 191
P ++DWR +GAVT +K+QG CGSCWAFSA+ VE + G L LSEQ LV C ++
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61
Query: 192 GCSGGLMDKAFEYIIE--NKGLATEADYPYQQEQGTCDK--QKEKAAAATIGKYEDLPKG 247
GCSGGLM+ AFE+I++ N + TE YPY +G ATI + +LP+
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 248 DEHALLQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGAK 307
+ PV+V V+AS ++ Y GV+ + + DHGV +VG+ +
Sbjct: 122 EAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEQLDHGVLLVGY---NDSAAVP 176
Query: 308 YWLIKNSWGETWGESGYIRILRDEGLCGIATEASYPV 344
YW+IKNSW WGE GYIRI + C + EAS V
Sbjct: 177 YWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 121/217 (55%), Gaps = 9/217 (4%)
Query: 132 PTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDNN 191
P ++DWR +GAVT +K+QG CGSCWAFSA+ VE + G L LSEQ LV C ++
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61
Query: 192 GCSGGLMDKAFEYIIE--NKGLATEADYPYQQEQGTCDK--QKEKAAAATIGKYEDLPKG 247
GCSGGLM+ AFE+I++ N + TE YPY +G ATI + +LP+
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 248 DEHALLQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGAK 307
+ PV+V V+AS ++ Y GV+ + + DHGV +VG+ +
Sbjct: 122 EAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEALDHGVLLVGY---NDSAAVP 176
Query: 308 YWLIKNSWGETWGESGYIRILRDEGLCGIATEASYPV 344
YW+IKNSW WGE GYIRI + C + EAS V
Sbjct: 177 YWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 124/220 (56%), Gaps = 14/220 (6%)
Query: 136 DWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDNNGCSG 195
DWR VT +K+Q +CGS WAFS++ +VE I KLI LSEQ+LVDCS N GC+G
Sbjct: 22 DWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGCNG 81
Query: 196 GLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEHALLQA 255
GL++ AFE +IE G+ + DYPY + I Y +P L+
Sbjct: 82 GLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPDNKLKEALRF 141
Query: 256 VTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAE-----EEDGAK--Y 308
+ P+S+ V S F FYK G+ + ECGD +H V +VGFG E + G K Y
Sbjct: 142 LG--PISISVAVS-DDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGEKHYY 198
Query: 309 WLIKNSWGETWGESGYIRILRDE-GL---CGIATEASYPV 344
++IKNSWG+ WGE G+I I DE GL CG+ T+A P+
Sbjct: 199 YIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPL 238
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 123/219 (56%), Gaps = 13/219 (5%)
Query: 132 PTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDNN 191
P ++DWR +GAVT +K+QG CGSCWAFSA+ VE + G L L+EQ LV C ++
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDS 61
Query: 192 GCSGGLMDKAFEYIIE--NKGLATEADYPYQQEQGTCDK--QKEKAAAATIGKYEDLPKG 247
GCSGGLM+ AFE+I++ N + TE YPY +G ATI + +LP+
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 248 DEHALLQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGA- 306
+ PV+V V+AS ++ Y GV+ + + DHGV +VG+ DGA
Sbjct: 122 EAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEQLDHGVLLVGY-----NDGAA 174
Query: 307 -KYWLIKNSWGETWGESGYIRILRDEGLCGIATEASYPV 344
YW+IKNSW WGE GYIRI + C + EAS V
Sbjct: 175 VPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 123/219 (56%), Gaps = 13/219 (5%)
Query: 132 PTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDNN 191
P ++DWR +GAVT +K+QG CGSCWAFSA+ VE + G L L+EQ LV C ++
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDS 61
Query: 192 GCSGGLMDKAFEYIIE--NKGLATEADYPYQQEQGTCDK--QKEKAAAATIGKYEDLPKG 247
GCSGGLM+ AFE+I++ N + TE YPY +G ATI + +LP+
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD 121
Query: 248 DEHALLQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGA- 306
+ PV+V V+AS ++ Y GV+ + + DHGV +VG+ DGA
Sbjct: 122 EAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEQLDHGVLLVGY-----NDGAA 174
Query: 307 -KYWLIKNSWGETWGESGYIRILRDEGLCGIATEASYPV 344
YW+IKNSW WGE GYIRI + C + EAS V
Sbjct: 175 VPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 161 bits (407), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 87/172 (50%), Positives = 114/172 (66%), Gaps = 7/172 (4%)
Query: 132 PTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD-- 189
P S+DWREKG VT +KNQG CGSCWAFSA A+EG G+LI LSEQ LVDCS
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 190 NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDE 249
N GC+GGLMD AF+Y+ +N GL +E YPY+ + +C K K + A + D+PK E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIPK-QE 119
Query: 250 HALLQAV-TKQPVSVCVEASGQAFRFYKRGV-LNAEC-GDNCDHGVAVVGFG 298
AL++AV T P+SV ++A ++F FYK G+ +C ++ DHGV VVG+G
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 157 bits (398), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 86/172 (50%), Positives = 113/172 (65%), Gaps = 7/172 (4%)
Query: 132 PTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD-- 189
P S+DWREKG VT +KNQG CGS WAFSA A+EG G+LI LSEQ LVDCS
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 190 NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDE 249
N GC+GGLMD AF+Y+ +N GL +E YPY+ + +C K K + A + D+PK E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIPK-QE 119
Query: 250 HALLQAV-TKQPVSVCVEASGQAFRFYKRGV-LNAEC-GDNCDHGVAVVGFG 298
AL++AV T P+SV ++A ++F FYK G+ +C ++ DHGV VVG+G
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 154 bits (390), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 117/220 (53%), Gaps = 14/220 (6%)
Query: 136 DWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDNNGCSG 195
DWR G VT +K+Q CGSCWAFS+V +VE I L SEQ+LVDCS NNGC G
Sbjct: 25 DWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVKNNGCYG 84
Query: 196 GLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEHALLQA 255
G + AF+ +I+ GL ++ DYPY K TI Y +P L+
Sbjct: 85 GYITNAFDDMIDLGGLCSQDDYPYVSNLPETCNLKRCNERYTIKSYVSIPDDKFKEALRY 144
Query: 256 VTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAE--EEDGAK-----Y 308
+ P+S+ + AS F FY+ G + ECG +H V +VG+G + ED + Y
Sbjct: 145 LG--PISISIAASDD-FAFYRGGFYDGECGAAPNHAVILVGYGMKDIYNEDTGRMEKFYY 201
Query: 309 WLIKNSWGETWGESGYIRILRDEG----LCGIATEASYPV 344
++IKNSWG WGE GYI + DE C I TEA P+
Sbjct: 202 YIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPL 241
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 135 bits (339), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 113/217 (52%), Gaps = 10/217 (4%)
Query: 132 PTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDNN 191
P DWR KGAVT +K+QG CGSCWAFS VEG + G L+ LSEQ+L+DC +
Sbjct: 2 PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDK 61
Query: 192 GCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEHA 251
C GGL A+ I GL TE DY YQ +C EK A I +L + ++
Sbjct: 62 ACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQFSAEK-AKVYIQDSVELSQNEQKL 120
Query: 252 LLQAVTKQPVSVCVEASGQAFRFYKRGV---LNAECGD-NCDHGVAVVGFGTAEEEDGAK 307
+ P+SV + A G +FY+ G+ L C DH V +VG+G +
Sbjct: 121 AAWLAKRGPISVAINAFG--MQFYRHGISRPLRPLCSPWLIDHAVLLVGYG---QRSDVP 175
Query: 308 YWLIKNSWGETWGESGYIRILRDEGLCGIATEASYPV 344
+W IKNSWG WGE GY + R G CG+ T AS V
Sbjct: 176 FWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAV 212
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 109/203 (53%), Gaps = 12/203 (5%)
Query: 127 NVTDVPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDC 186
N +VP+ +D R VT I+ QG CGSCWAFS VAA E ++LSEQ+LVDC
Sbjct: 7 NSVNVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDC 66
Query: 187 STDNNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPK 246
++ +GC G + + EYI +N G+ E YPY + C + + I Y +
Sbjct: 67 AS-QHGCHGDTIPRGIEYIQQN-GVVEERSYPYVAREQRCRRPNSQHYG--ISNYCQIYP 122
Query: 247 GDEHALLQAVTKQPVSVCVEASGQAFRFYK----RGVLNAECGDNCD-HGVAVVGFGTAE 301
D + +A+T+ ++ V + R ++ R ++ + G + H V +VG+G+ +
Sbjct: 123 PDVKQIREALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQHDNGYQPNYHAVNIVGYGSTQ 182
Query: 302 EEDGAKYWLIKNSWGETWGESGY 324
+D YW+++NSW TWG+SGY
Sbjct: 183 GDD---YWIVRNSWDTTWGDSGY 202
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 112/237 (47%), Gaps = 30/237 (12%)
Query: 126 QNVTDVPTSIDWREKGA---VTHIKNQGHCGSCWAFSAVAAVEGITQI--TGGKLIELSE 180
Q + +PTS DWR V+ ++NQ CGSC++F+++ +E +I + LS
Sbjct: 202 QKILFLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSP 261
Query: 181 QQLVDCSTDNNGCSGGLMDKAFEYIIENK-----GLATEADYPYQQEQGTCDKQKEKAAA 235
Q++V CS GC GG F Y+I K GL EA +PY C K KE
Sbjct: 262 QEVVSCSQYAQGCEGG-----FPYLIAGKYAQDFGLVEEACFPYTGTDSPC-KMKEDCFR 315
Query: 236 ATIGKYE---DLPKGDEHAL--LQAVTKQPVSVCVEASGQAFRFYKRGVLNA-------E 283
+Y G AL L+ V P++V E F YK+G+ +
Sbjct: 316 YYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDD-FLHYKKGIYHHTGLRDPFN 374
Query: 284 CGDNCDHGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRILRDEGLCGIATEA 340
+ +H V +VG+GT + G YW++KNSWG WGE+GY RI R C I + A
Sbjct: 375 PFELTNHAVLLVGYGT-DSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIA 430
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 108/200 (54%), Gaps = 12/200 (6%)
Query: 130 DVPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD 189
+ P ID R+ VT I+ QG CGSCWAFS VAA E + ++L+EQ+LVDC++
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCASQ 68
Query: 190 NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDE 249
+GC G + + EY I++ G+ E+ Y Y + +C ++ A I Y + +
Sbjct: 69 -HGCHGDTIPRGIEY-IQHNGVVQESYYRYVAREQSC--RRPNAQRFGISNYCQIYPPNV 124
Query: 250 HALLQAVTKQPVSVCVEASGQ---AFRFYK-RGVLNAECGDNCD-HGVAVVGFGTAEEED 304
+ + +A+ + ++ V + AFR Y R ++ + G + H V +VG+ A+
Sbjct: 125 NKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQ--- 181
Query: 305 GAKYWLIKNSWGETWGESGY 324
G YW+++NSW WG++GY
Sbjct: 182 GVDYWIVRNSWDTNWGDNGY 201
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 139/303 (45%), Gaps = 35/303 (11%)
Query: 35 EPSIVEKHEQWMAQHGRTYKD-ELEKAMRLTIFKQNLEYIEKANKEGNRTYKLGTNEFSD 93
PS ++ E++ ++Y E E+A R K LE ++ G N SD
Sbjct: 1 RPSSIKTFEEYKKAFNKSYATFEDEEAAR----KNFLESVKYVQSNGG-----AINHLSD 51
Query: 94 LTNEEFRASYTGYNXXXXXXXXXXXXXXTFKYQNVTDV-------PTSIDWREKGAVTHI 146
L+ +EF+ N F T+ P ID R+ VT I
Sbjct: 52 LSLDEFK------NRFLMSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQMRTVTPI 105
Query: 147 KNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDNNGCSGGLMDKAFEYII 206
+ QG CGS WAFS VAA E + ++L+EQ+LVDC++ +GC G + + EYI
Sbjct: 106 RMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCASQ-HGCHGDTIPRGIEYIQ 164
Query: 207 ENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEHALLQAV--TKQPVSVC 264
N G+ E+ Y Y + +C ++ A I Y + + + + +A+ T ++V
Sbjct: 165 HN-GVVQESYYRYVAREQSC--RRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVI 221
Query: 265 VEASG-QAFRFYK-RGVLNAECGDNCD-HGVAVVGFGTAEEEDGAKYWLIKNSWGETWGE 321
+ AFR Y R ++ + G + H V +VG+ A+ G YW+++NSW WG+
Sbjct: 222 IGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQ---GVDYWIVRNSWDTNWGD 278
Query: 322 SGY 324
+GY
Sbjct: 279 NGY 281
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 108/200 (54%), Gaps = 12/200 (6%)
Query: 130 DVPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD 189
+ P ID R+ VT I+ QG CGSCWAFS VAA E + ++L+EQ+LVDC++
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDCASQ 68
Query: 190 NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDE 249
+GC G + + EY I++ G+ E+ Y Y + +C ++ A I Y + +
Sbjct: 69 -HGCHGDTIPRGIEY-IQHNGVVQESYYRYVAREQSC--RRPNAQRFGISNYCQIYPPNA 124
Query: 250 HALLQAVTKQPVSVCVEASGQ---AFRFYK-RGVLNAECGDNCD-HGVAVVGFGTAEEED 304
+ + +A+ + ++ V + AFR Y R ++ + G + H V +VG+ A+
Sbjct: 125 NKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQ--- 181
Query: 305 GAKYWLIKNSWGETWGESGY 324
G YW+++NSW WG++GY
Sbjct: 182 GVDYWIVRNSWDTNWGDNGY 201
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 107/200 (53%), Gaps = 12/200 (6%)
Query: 130 DVPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD 189
+ P ID R+ VT I+ QG CGS WAFS VAA E + ++L+EQ+LVDC++
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDCASQ 68
Query: 190 NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDE 249
+GC G + + EY I++ G+ E+ Y Y + +C ++ A I Y + +
Sbjct: 69 -HGCHGDTIPRGIEY-IQHNGVVQESYYRYVAREQSC--RRPNAQRFGISNYCQIYPPNA 124
Query: 250 HALLQAVTKQPVSVCVEASGQ---AFRFYK-RGVLNAECGDNCD-HGVAVVGFGTAEEED 304
+ + +A+ + ++ V + AFR Y R ++ + G + H V +VG+ A+
Sbjct: 125 NKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQ--- 181
Query: 305 GAKYWLIKNSWGETWGESGY 324
G YW+++NSW WG++GY
Sbjct: 182 GVDYWIVRNSWDTNWGDNGY 201
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 109/237 (45%), Gaps = 30/237 (12%)
Query: 126 QNVTDVPTSIDWRE-KGA--VTHIKNQGHCGSCWAFSAVAAVEGITQI--TGGKLIELSE 180
Q + +P S DWR +G V+ ++NQ CGSC++F+++ +E +I + LS
Sbjct: 201 QQILSLPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNSQTPILSP 260
Query: 181 QQLVDCSTDNNGCSGGLMDKAFEYIIENK-----GLATEADYPYQQEQGTCDKQKEKA-- 233
Q++V CS GC GG F Y+I K G+ E +PY C K KE
Sbjct: 261 QEVVSCSPYAQGCDGG-----FPYLIAGKYAQDFGVVEENCFPYTATDAPC-KPKENCLR 314
Query: 234 --AAATIGKYEDLPKGDEHAL-LQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDN--- 287
++ +E + L+ V P++V E F Y G+ + +
Sbjct: 315 YYSSEYYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHDD-FLHYHSGIYHHTGLSDPFN 373
Query: 288 ----CDHGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRILRDEGLCGIATEA 340
+H V +VG+G + G YW++KNSWG WGESGY RI R C I + A
Sbjct: 374 PFELTNHAVLLVGYG-KDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTDECAIESIA 429
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 119/254 (46%), Gaps = 46/254 (18%)
Query: 129 TDVPTSIDWREK----GAVTHIKNQGHCGSCWAFSAVAAVEGITQI-TGGKL-IELSEQQ 182
++P+S D R+K ++ I++Q CGSCWAF AV A+ + I +GGK +ELS
Sbjct: 1 VEIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVD 60
Query: 183 LVDCSTDNN-GCSGGLMDKAFEYIIENKGLATEAD---------YPYQQEQG-------- 224
L+ C GC GG++ A++Y ++ +G+ T + YP+ + +
Sbjct: 61 LLSCCESCGLGCEGGILGPAWDYWVK-EGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPP 119
Query: 225 -------------TCDKQKEKAAAAT--IGKYEDLPKGDEHALLQAVTKQ-PVSVCVEAS 268
TC K+ + GK K DE A+ + + K PV
Sbjct: 120 CGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVY 179
Query: 269 GQAFRFYKRGVLNAECGDNCD-HGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRI 327
+ F YK G+ G+ H + ++G+G E+ A YWLI NSW E WGE+GY RI
Sbjct: 180 -EDFLNYKSGIYKHITGETLGGHAIRIIGWGV---ENKAPYWLIANSWNEDWGENGYFRI 235
Query: 328 LRDEGLCGIATEAS 341
+R C I +E +
Sbjct: 236 VRGRDECSIESEVT 249
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 111/253 (43%), Gaps = 50/253 (19%)
Query: 130 DVPTSIDWREKGA----VTHIKNQGHCGSCWAFSAVAAV-EGITQITGGKL-IELSEQQL 183
++P S D RE+ + + I++QG CGSCWAF AV A+ + I T G++ +E+S + L
Sbjct: 6 NLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDL 65
Query: 184 VDCS--TDNNGCSGGLMDKAFEYIIENKGLATEADY-------PYQQEQGTCDKQKEKAA 234
+ C +GC+GG A+ + KGL + Y PY C+ A
Sbjct: 66 LTCCGIQCGDGCNGGYPSGAWNFWTR-KGLVSGGVYNSHIGCLPYTIPP--CEHHVNGAR 122
Query: 235 AATIGK-------------YEDLPKGDEH--------------ALLQAVTKQPVSVCVEA 267
G+ Y K D+H + + PV
Sbjct: 123 PPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTV 182
Query: 268 SGQAFRFYKRGVLNAECGDNCD-HGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIR 326
F YK GV E GD H + ++G+G E+G YWL+ NSW WG++G+ +
Sbjct: 183 FSD-FLTYKSGVYKHEAGDVMGGHAIRILGWGI---ENGVPYWLVANSWNADWGDNGFFK 238
Query: 327 ILRDEGLCGIATE 339
ILR E CGI +E
Sbjct: 239 ILRGENHCGIESE 251
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 110/252 (43%), Gaps = 50/252 (19%)
Query: 131 VPTSIDWREKGA----VTHIKNQGHCGSCWAFSAVAAV-EGITQITGGKL-IELSEQQLV 184
+P S D RE+ + + I++QG CGSCWAF AV A+ + I T G++ +E+S + L+
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 185 DCS--TDNNGCSGGLMDKAFEYIIENKGLATEADY-------PYQQEQGTCDKQKEKAAA 235
C +GC+GG A+ + KGL + Y PY C+ A
Sbjct: 61 TCCGIQCGDGCNGGYPSGAWNFWTR-KGLVSGGVYNSHIGCLPYTIPP--CEHHVNGARP 117
Query: 236 ATIGK-------------YEDLPKGDEH--------------ALLQAVTKQPVSVCVEAS 268
G+ Y K D+H + + PV
Sbjct: 118 PCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVF 177
Query: 269 GQAFRFYKRGVLNAECGDNCD-HGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRI 327
F YK GV E GD H + ++G+G E+G YWL+ NSW WG++G+ +I
Sbjct: 178 SD-FLTYKSGVYKHEAGDVMGGHAIRILGWGI---ENGVPYWLVANSWNADWGDNGFFKI 233
Query: 328 LRDEGLCGIATE 339
LR E CGI +E
Sbjct: 234 LRGENHCGIESE 245
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 111/230 (48%), Gaps = 33/230 (14%)
Query: 124 KYQNVTDVPTSIDWREKGAVTH---IKNQG---HCGSCWAFSAVAAVE---GITQITGGK 174
+Y + D+P S DWR V + +NQ +CGSCWA ++ +A+ I +
Sbjct: 29 EYLSPADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWP 88
Query: 175 LIELSEQQLVDCSTDNNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQ---------GT 225
LS Q ++DC + C GG ++Y ++ G+ E YQ + GT
Sbjct: 89 STLLSVQNVIDCG-NAGSCEGGNDLSVWDYAHQH-GIPDETCNNYQAKDQECDKFNQCGT 146
Query: 226 CDKQKEKAAAAT-----IGKYEDLPKGDEHALLQAVTKQPVSVCVEASGQAFRFYKRGVL 280
C++ KE A +G Y L G E + + P+S + A+ + + G +
Sbjct: 147 CNEFKECHAIRNYTLWRVGDYGSL-SGREKMMAEIYANGPISCGIMATERLANY--TGGI 203
Query: 281 NAECGDN--CDHGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRIL 328
AE D +H V+V G+G + DG +YW+++NSWGE WGE G++RI+
Sbjct: 204 YAEYQDTTYINHVVSVAGWGIS---DGTEYWIVRNSWGEPWGERGWLRIV 250
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 110/253 (43%), Gaps = 50/253 (19%)
Query: 130 DVPTSIDWREKGA----VTHIKNQGHCGSCWAFSAVAAV-EGITQITGGKL-IELSEQQL 183
++P S D RE+ + + I++QG CGS WAF AV A+ + I T G++ +E+S + L
Sbjct: 62 NLPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSAEDL 121
Query: 184 VDCSTD--NNGCSGGLMDKAFEYIIENKGLATEADY-------PYQQEQGTCDKQKEKAA 234
+ C +GC+GG A+ + KGL + Y PY C+ A
Sbjct: 122 LTCCGIQCGDGCNGGYPSGAWNFWTR-KGLVSGGVYNSHIGCLPYTIPP--CEHHVNGAR 178
Query: 235 AATIGK-------------YEDLPKGDEH--------------ALLQAVTKQPVSVCVEA 267
G+ Y K D+H + + PV
Sbjct: 179 PPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTV 238
Query: 268 SGQAFRFYKRGVLNAECGDNCD-HGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIR 326
F YK GV E GD H + ++G+G E+G YWL+ NSW WG++G+ +
Sbjct: 239 FSD-FLTYKSGVYKHEAGDVMGGHAIRILGWGI---ENGVPYWLVANSWNADWGDNGFFK 294
Query: 327 ILRDEGLCGIATE 339
ILR E CGI +E
Sbjct: 295 ILRGENHCGIESE 307
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 109/251 (43%), Gaps = 46/251 (18%)
Query: 131 VPTSID----WREKGAVTHIKNQGHCGSCWAFSAVAAV-EGITQITGGKL-IELSEQQLV 184
+P S D W + + I++QG CGSCWAF AV A+ + I T + +E+S + L+
Sbjct: 64 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 123
Query: 185 DC--STDNNGCSGGLMDKAFEYIIENKGLATEADY-------PY---------QQEQGTC 226
C S +GC+GG +A+ + KGL + Y PY + C
Sbjct: 124 TCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 182
Query: 227 DKQKEKAAAATIGK--YEDLPKGDEH--------------ALLQAVTKQPVSVCVEASGQ 270
+ + + I + Y K D+H + + PV
Sbjct: 183 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 242
Query: 271 AFRFYKRGVLNAECGDNCD-HGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRILR 329
F YK GV G+ H + ++G+G E+G YWL+ NSW WG++G+ +ILR
Sbjct: 243 -FLLYKSGVYQHVTGEMMGGHAIRILGWGV---ENGTPYWLVANSWNTDWGDNGFFKILR 298
Query: 330 DEGLCGIATEA 340
+ CGI +E
Sbjct: 299 GQDHCGIESEV 309
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 109/251 (43%), Gaps = 46/251 (18%)
Query: 131 VPTSID----WREKGAVTHIKNQGHCGSCWAFSAVAAV-EGITQITGGKL-IELSEQQLV 184
+P S D W + + I++QG CGSCWAF AV A+ + I T + +E+S + L+
Sbjct: 2 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 61
Query: 185 DC--STDNNGCSGGLMDKAFEYIIENKGLATEADY-------PY---------QQEQGTC 226
C S +GC+GG +A+ + KGL + Y PY + C
Sbjct: 62 TCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 120
Query: 227 DKQKEKAAAATIGK--YEDLPKGDEH--------------ALLQAVTKQPVSVCVEASGQ 270
+ + + I + Y K D+H + + PV
Sbjct: 121 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 180
Query: 271 AFRFYKRGVLNAECGDNCD-HGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRILR 329
F YK GV G+ H + ++G+G E+G YWL+ NSW WG++G+ +ILR
Sbjct: 181 -FLLYKSGVYQHVTGEMMGGHAIRILGWGV---ENGTPYWLVANSWNTDWGDNGFFKILR 236
Query: 330 DEGLCGIATEA 340
+ CGI +E
Sbjct: 237 GQDHCGIESEV 247
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 109/251 (43%), Gaps = 46/251 (18%)
Query: 131 VPTSID----WREKGAVTHIKNQGHCGSCWAFSAVAAV-EGITQITGGKL-IELSEQQLV 184
+P S D W + + I++QG CGSCWAF AV A+ + I T + +E+S + L+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 185 DC--STDNNGCSGGLMDKAFEYIIENKGLATEADY-------PY---------QQEQGTC 226
C S +GC+GG +A+ + KGL + Y PY + C
Sbjct: 61 TCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 119
Query: 227 DKQKEKAAAATIGK--YEDLPKGDEH--------------ALLQAVTKQPVSVCVEASGQ 270
+ + + I + Y K D+H + + PV
Sbjct: 120 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 179
Query: 271 AFRFYKRGVLNAECGDNCD-HGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRILR 329
F YK GV G+ H + ++G+G E+G YWL+ NSW WG++G+ +ILR
Sbjct: 180 -FLLYKSGVYQHVTGEMMGGHAIRILGWGV---ENGTPYWLVANSWNTDWGDNGFFKILR 235
Query: 330 DEGLCGIATEA 340
+ CGI +E
Sbjct: 236 GQDHCGIESEV 246
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 109/251 (43%), Gaps = 46/251 (18%)
Query: 131 VPTSID----WREKGAVTHIKNQGHCGSCWAFSAVAAV-EGITQITGGKL-IELSEQQLV 184
+P S D W + + I++QG CGSCWAF AV A+ + I T + +E+S + L+
Sbjct: 3 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 62
Query: 185 DC--STDNNGCSGGLMDKAFEYIIENKGLATEADY-------PY---------QQEQGTC 226
C S +GC+GG +A+ + KGL + Y PY + C
Sbjct: 63 TCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 121
Query: 227 DKQKEKAAAATIGK--YEDLPKGDEH--------------ALLQAVTKQPVSVCVEASGQ 270
+ + + I + Y K D+H + + PV
Sbjct: 122 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 181
Query: 271 AFRFYKRGVLNAECGDNCD-HGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRILR 329
F YK GV G+ H + ++G+G E+G YWL+ NSW WG++G+ +ILR
Sbjct: 182 -FLLYKSGVYQHVTGEMMGGHAIRILGWGV---ENGTPYWLVANSWNTDWGDNGFFKILR 237
Query: 330 DEGLCGIATEA 340
+ CGI +E
Sbjct: 238 GQDHCGIESEV 248
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 107/223 (47%), Gaps = 33/223 (14%)
Query: 131 VPTSIDWREKGAVTH---IKNQG---HCGSCWAFSAVAAVE---GITQITGGKLIELSEQ 181
+P S DWR V + +NQ +CGSCWA ++ +A+ I + LS Q
Sbjct: 1 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 60
Query: 182 QLVDCSTDNNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQ---------GTCDKQKEK 232
++DC + C GG ++Y ++ G+ E YQ + GTC++ KE
Sbjct: 61 NVIDCG-NAGSCEGGNDLSVWDYAHQH-GIPDETCNNYQAKDQECDKFNQCGTCNEFKEC 118
Query: 233 AAAAT-----IGKYEDLPKGDEHALLQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDN 287
A +G Y L G E + + P+S + A+ + + G + AE D
Sbjct: 119 HAIRNYTLWRVGDYGSL-SGREKMMAEIYANGPISCGIMATERLANY--TGGIYAEYQDT 175
Query: 288 --CDHGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRIL 328
+H V+V G+G + DG +YW+++NSWGE WGE G++RI+
Sbjct: 176 TYINHVVSVAGWGIS---DGTEYWIVRNSWGEPWGERGWLRIV 215
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 100/238 (42%), Gaps = 38/238 (15%)
Query: 131 VPTSID----WREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGG-KLIELSEQQLVD 185
+P+S D W + I +Q CGSCWA +A +A+ GG + + +S L+
Sbjct: 94 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 153
Query: 186 CSTD-NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYE-D 243
C +D +GC+GG D+A+ Y + GL ++ PY + K K ++ D
Sbjct: 154 CCSDCGDGCNGGDPDRAWAY-FSSTGLVSDYCQPYPFPHCS-HHSKSKNGYPPCSQFNFD 211
Query: 244 LPK------------------------GDEHALLQAVTKQPVSVCVEASGQAFRFYKRGV 279
PK G++ + + + P V + + F Y GV
Sbjct: 212 TPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY-EDFIAYNSGV 270
Query: 280 LNAECGDNC-DHGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRILRDEGLCGI 336
+ G H V +VG+GT+ +G YW I NSW WG GY I R CGI
Sbjct: 271 YHHVSGQYLGGHAVRLVGWGTS---NGVPYWKIANSWNTEWGMDGYFLIRRGSSECGI 325
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 100/238 (42%), Gaps = 38/238 (15%)
Query: 131 VPTSID----WREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGG-KLIELSEQQLVD 185
+P+S D W + I +Q CGSCWA +A +A+ GG + + +S L+
Sbjct: 71 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 130
Query: 186 CSTD-NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYE-D 243
C +D +GC+GG D+A+ Y + GL ++ PY + K K ++ D
Sbjct: 131 CCSDCGDGCNGGDPDRAWAY-FSSTGLVSDYCQPYPFPHCS-HHSKSKNGYPPCSQFNFD 188
Query: 244 LPK------------------------GDEHALLQAVTKQPVSVCVEASGQAFRFYKRGV 279
PK G++ + + + P V + + F Y GV
Sbjct: 189 TPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY-EDFIAYNSGV 247
Query: 280 LNAECGDNC-DHGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRILRDEGLCGI 336
+ G H V +VG+GT+ +G YW I NSW WG GY I R CGI
Sbjct: 248 YHHVSGQYLGGHAVRLVGWGTS---NGVPYWKIANSWNTEWGMDGYFLIRRGSSECGI 302
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 100/238 (42%), Gaps = 38/238 (15%)
Query: 131 VPTSID----WREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGG-KLIELSEQQLVD 185
+P+S D W + I +Q CGSCWA +A +A+ GG + + +S L+
Sbjct: 72 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 131
Query: 186 CSTD-NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYE-D 243
C +D +GC+GG D+A+ Y + GL ++ PY + K K ++ D
Sbjct: 132 CCSDCGDGCNGGDPDRAWAY-FSSTGLVSDYCQPYPFPHCS-HHSKSKNGYPPCSQFNFD 189
Query: 244 LPK------------------------GDEHALLQAVTKQPVSVCVEASGQAFRFYKRGV 279
PK G++ + + + P V + + F Y GV
Sbjct: 190 TPKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY-EDFIAYNSGV 248
Query: 280 LNAECGDNC-DHGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRILRDEGLCGI 336
+ G H V +VG+GT+ +G YW I NSW WG GY I R CGI
Sbjct: 249 YHHVSGQYLGGHAVRLVGWGTS---NGVPYWKIANSWNTEWGMDGYFLIRRGSSECGI 303
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 106/253 (41%), Gaps = 50/253 (19%)
Query: 131 VPTSID----WREKGAVTHIKNQGHCGSCWAFSAVAAV-EGITQITGGKL-IELSEQQLV 184
+P S D W + + I++QG CGS WAF AV A+ + I T + +E+S + L+
Sbjct: 7 LPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 66
Query: 185 DC--STDNNGCSGGLMDKAFEYIIENKGLATEADY-------PYQQEQGTCDKQKEKAAA 235
C S +GC+GG +A+ + KGL + Y PY C+ A
Sbjct: 67 TCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSGGLYESHVGCRPYSIP--PCEAHVNGARP 123
Query: 236 ATIGK-------------YEDLPKGDEH--------------ALLQAVTKQPVSVCVEAS 268
G+ Y K D+H + + PV
Sbjct: 124 PCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY 183
Query: 269 GQAFRFYKRGVLNAECGDNCD-HGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRI 327
F YK GV G+ H + ++G+G E+G YWL+ NSW WG++G+ +I
Sbjct: 184 SD-FLLYKSGVYQHVTGEMMGGHAIRILGWGV---ENGTPYWLVANSWNTDWGDNGFFKI 239
Query: 328 LRDEGLCGIATEA 340
LR + CGI +E
Sbjct: 240 LRGQDHCGIESEV 252
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 103/249 (41%), Gaps = 44/249 (17%)
Query: 131 VPTSIDWREK----GAVTHIKNQGHCGSCWAFSAVAAV-EGITQITGGKL-IELSEQQLV 184
+P S D RE+ + I++QG CGSCWAF AV A+ + I + G++ +E+S + ++
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 185 DCS--------------------TDNNGCSGGLMDKAF---EYIIENKGLATEADYPYQQ 221
C T SGGL + Y I P
Sbjct: 61 TCCGGECGDGCNGGEPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 222 EQGTCDKQKEKAAAATIGKY-EDLPKG--------DEHALLQAVTKQ-PVSVCVEASGQA 271
+G K + Y ED G +E ++ + K PV
Sbjct: 121 GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYSD- 179
Query: 272 FRFYKRGVLNAECGDNCD-HGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRILRD 330
F YK GV G+ H + ++G+G E+G YWL+ NSW WG++G+ +ILR
Sbjct: 180 FLLYKSGVYQHVSGEIMGGHAIRILGWGV---ENGTPYWLVANSWNTDWGDNGFFKILRG 236
Query: 331 EGLCGIATE 339
+ CGI +E
Sbjct: 237 QDHCGIESE 245
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 103/249 (41%), Gaps = 44/249 (17%)
Query: 131 VPTSIDWREK----GAVTHIKNQGHCGSCWAFSAVAAV-EGITQITGGKL-IELSEQQLV 184
+P S D RE+ + I++QG CGSCWAF AV A+ + I + G++ +E+S + ++
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 185 --------------------DCSTDNNGCSGGLMDKAF---EYIIENKGLATEADYPYQQ 221
+ T SGGL + Y I P
Sbjct: 61 TCCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 222 EQGTCDKQKEKAAAATIGKY-EDLPKG--------DEHALLQAVTKQ-PVSVCVEASGQA 271
+G K + Y ED G +E ++ + K PV
Sbjct: 121 GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYSD- 179
Query: 272 FRFYKRGVLNAECGDNCD-HGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRILRD 330
F YK GV G+ H + ++G+G E+G YWL+ NSW WG++G+ +ILR
Sbjct: 180 FLLYKSGVYQHVSGEIMGGHAIRILGWGV---ENGTPYWLVGNSWNTDWGDNGFFKILRG 236
Query: 331 EGLCGIATE 339
+ CGI +E
Sbjct: 237 QDHCGIESE 245
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 76/166 (45%), Gaps = 22/166 (13%)
Query: 131 VPTSIDWREKGA---VTHIKNQGHCGSCWAFSAVAAVEGITQI--TGGKLIELSEQQLVD 185
+PTS DWR V+ ++NQ CGSC++F+++ +E +I + LS Q++V
Sbjct: 1 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 60
Query: 186 CSTDNNGCSGGLMDKAFEYIIENK-----GLATEADYPYQQEQGTCDKQKEKAAAATIGK 240
CS GC GG F Y+I K GL EA +PY C K KE +
Sbjct: 61 CSQYAQGCEGG-----FPYLIAGKYAQDFGLVEEACFPYTGTDSPC-KMKEDCFRYYSSE 114
Query: 241 YE---DLPKGDEHAL--LQAVTKQPVSVCVEASGQAFRFYKRGVLN 281
Y G AL L+ V P++V E F YK+G+ +
Sbjct: 115 YHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDD-FLHYKKGIYH 159
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 146 IKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDC--STDNNGCSGGLMDKAFE 203
+++QG+C + W F++ +E I + G + ++S + +C + C G F
Sbjct: 24 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 83
Query: 204 YIIENKG-LATEADYPYQQ------------------EQGTCDKQKEKAAAATIGKYEDL 244
IIE+ G L E++YPY + G K + + Y
Sbjct: 84 QIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAY 143
Query: 245 PKGDEHALLQA---------VTKQPVSVCVEASG-QAFRFYKRGVLNAECGDN-CDHGVA 293
H + A + K V ++A + F + V N CGD+ DH V
Sbjct: 144 ESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVQNL-CGDDTADHAVN 202
Query: 294 VVGFGTAEEEDGAK--YWLIKNSWGETWGESGYIRI 327
+VG+G +G K YW+++NSWG WG+ GY ++
Sbjct: 203 IVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 238
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 146 IKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDC--STDNNGCSGGLMDKAFE 203
+++QG+C + W F++ +E I + G + ++S + +C + C G F
Sbjct: 25 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 84
Query: 204 YIIENKG-LATEADYPYQQ------------------EQGTCDKQKEKAAAATIGKYEDL 244
IIE+ G L E++YPY + G K + + Y
Sbjct: 85 QIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAY 144
Query: 245 PKGDEHALLQA---------VTKQPVSVCVEASG-QAFRFYKRGVLNAECGDN-CDHGVA 293
H + A + K V ++A + F + V N CGD+ DH V
Sbjct: 145 ESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVKNL-CGDDTADHAVN 203
Query: 294 VVGFGTAEEEDGAK--YWLIKNSWGETWGESGYIRI 327
+VG+G +G K YW+++NSWG WG+ GY ++
Sbjct: 204 IVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 239
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 57.8 bits (138), Expect = 9e-09, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 289 DHGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRILRDEGLCGIATEA 340
+H V +VG+GT + G YW++KNSWG WGE+GY RI R C I + A
Sbjct: 10 NHAVLLVGYGT-DSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIA 60
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 272 FRFYKRGVLNAECGDNCD-HGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRILRD 330
F YK GV G+ H + ++G+G E+G YWL+ NSW WG++G+ +ILR
Sbjct: 131 FLLYKSGVYQHVTGEMMGGHAIRILGWGV---ENGTPYWLVANSWNTDWGDNGFFKILRG 187
Query: 331 EGLCGIATEA 340
+ CGI +E
Sbjct: 188 QDHCGIESEV 197
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 272 FRFYKRGVLNAECGDNCD-HGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRILRD 330
F YK GV G+ H + ++G+G E+G YWL+ NSW WG++G+ +ILR
Sbjct: 132 FLLYKSGVYQHVSGEIMGGHAIRILGWGV---ENGTPYWLVGNSWNTDWGDNGFFKILRG 188
Query: 331 EGLCGIATE 339
+ CGI +E
Sbjct: 189 QDHCGIESE 197
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
Query: 307 KYWLIKNSWGETWGESGYIRILRD-EGLCGIATEASYP 343
KYWL+KNSWGE WG GY+++ +D CGIA+ ASYP
Sbjct: 3 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 40
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 106
Score = 52.0 bits (123), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 35 EPSIVEKHEQWMAQHGRTYKDELEKAMRLTIFKQNLEYIEKANKEGNRTYKLGTNEFSDL 94
E + + A + ++Y E EK R IFK NL YI N++G +Y L N F DL
Sbjct: 18 EAHFQDAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQG-YSYSLKMNHFGDL 76
Query: 95 TNEEFRASYTGY 106
+ +EFR Y G+
Sbjct: 77 SRDEFRRKYLGF 88
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 131 VPTSIDWREK----GAVTHIKNQGHCGSCWAFSAVAAV 164
+P S D RE+ + I++QG CGSCWAF AV A+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 131 VPTSIDWREK----GAVTHIKNQGHCGSCWAFSAVAAV 164
+P S D RE+ + I++QG CGSCWAF AV A+
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|2L95|A Chain A, Solution Structure Of Cytotoxic T-Lymphocyte
Antigent-2(Ctla Protein), Crammer At Ph 6.0
Length = 80
Score = 34.7 bits (78), Expect = 0.088, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 7/63 (11%)
Query: 43 EQWM---AQHGRTYKDELEKAMRLTIFKQNLEYIEKANKE---GNRTYKLGTNEFSDLTN 96
E+W+ ++ + Y+ E E MR I+ ++ IE+ N++ G T+K+G N +DLT
Sbjct: 8 EEWVEYKSKFDKNYEAE-EDLMRRRIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTP 66
Query: 97 EEF 99
EEF
Sbjct: 67 EEF 69
>pdb|3PW3|A Chain A, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|B Chain B, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|C Chain C, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|D Chain D, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|E Chain E, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|F Chain F, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
Length = 383
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 10/58 (17%)
Query: 259 QPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGAKYWLIKNSWG 316
QP C +A Q N E D DHG + +G A++++G +Y+ +KNSWG
Sbjct: 295 QPQKWCTQAERQL------AYDNYETTD--DHGXQI--YGIAKDQEGNEYYXVKNSWG 342
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 139 EKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLV 184
++ +T +KNQ G+CW +S+ + +E G +LSE V
Sbjct: 18 KENPITSVKNQNRAGTCWCYSSYSFLESELLRXGKGEYDLSEXFTV 63
>pdb|1CB5|A Chain A, Human Bleomycin Hydrolase.
pdb|1CB5|B Chain B, Human Bleomycin Hydrolase.
pdb|1CB5|C Chain C, Human Bleomycin Hydrolase
Length = 453
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 290 HGVAVVGFGTAEEEDGA-KYWLIKNSWGETWGESGYI 325
H + +++DGA W ++NSWGE G GY+
Sbjct: 371 HAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYL 407
>pdb|2CB5|A Chain A, Human Bleomycin Hydrolase, C73s/dele455 Mutant
pdb|2CB5|B Chain B, Human Bleomycin Hydrolase, C73s/dele455 Mutant
Length = 453
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 290 HGVAVVGFGTAEEEDGA-KYWLIKNSWGETWGESGYI 325
H + +++DGA W ++NSWGE G GY+
Sbjct: 371 HAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYL 407
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 290 HGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYI 325
H V VG+ +D +++ I+NSWG GE GY
Sbjct: 237 HAVLCVGY-----DDEIRHFRIRNSWGNNVGEDGYF 267
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,984,901
Number of Sequences: 62578
Number of extensions: 407954
Number of successful extensions: 1265
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 774
Number of HSP's gapped (non-prelim): 165
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)