Query 019112
Match_columns 346
No_of_seqs 301 out of 1860
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 06:47:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019112.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019112hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542 Cysteine proteinase Ca 100.0 3.7E-84 8E-89 583.9 26.8 302 33-344 62-370 (372)
2 PTZ00203 cathepsin L protease; 100.0 4.8E-81 1E-85 589.4 36.2 320 17-344 13-339 (348)
3 PTZ00021 falcipain-2; Provisio 100.0 5.8E-79 1.3E-83 591.1 32.0 309 32-345 159-488 (489)
4 PTZ00200 cysteine proteinase; 100.0 1.9E-78 4.2E-83 585.8 34.1 305 33-346 117-446 (448)
5 KOG1543 Cysteine proteinase Ca 100.0 4.1E-71 8.9E-76 518.3 30.1 287 46-345 30-324 (325)
6 cd02621 Peptidase_C1A_Cathepsi 100.0 4.6E-59 1E-63 423.5 22.5 211 131-344 1-241 (243)
7 cd02698 Peptidase_C1A_Cathepsi 100.0 2.1E-58 4.5E-63 417.9 23.0 208 131-345 1-238 (239)
8 cd02248 Peptidase_C1A Peptidas 100.0 7.7E-58 1.7E-62 406.6 22.6 206 132-343 1-210 (210)
9 cd02620 Peptidase_C1A_Cathepsi 100.0 2E-57 4.3E-62 410.7 21.5 204 132-341 1-234 (236)
10 PF00112 Peptidase_C1: Papain 100.0 5.6E-56 1.2E-60 396.3 19.6 211 131-344 1-219 (219)
11 PTZ00049 cathepsin C-like prot 100.0 4.8E-55 1E-59 432.7 23.9 215 128-345 378-676 (693)
12 PTZ00364 dipeptidyl-peptidase 100.0 1.1E-54 2.4E-59 426.1 22.8 207 129-341 203-455 (548)
13 smart00645 Pept_C1 Papain fami 100.0 1.8E-50 3.9E-55 348.7 17.9 166 131-340 1-170 (174)
14 cd02619 Peptidase_C1 C1 Peptid 100.0 9.5E-47 2.1E-51 337.4 20.2 193 134-330 1-212 (223)
15 PTZ00462 Serine-repeat antigen 100.0 7.6E-46 1.7E-50 376.7 21.9 201 143-345 544-781 (1004)
16 KOG1544 Predicted cysteine pro 100.0 2E-44 4.4E-49 321.7 7.0 265 71-341 151-456 (470)
17 COG4870 Cysteine protease [Pos 100.0 2.2E-31 4.8E-36 243.9 7.2 198 130-331 98-314 (372)
18 cd00585 Peptidase_C1B Peptidas 99.9 4.3E-24 9.3E-29 206.0 13.9 179 144-330 55-399 (437)
19 PF08246 Inhibitor_I29: Cathep 99.7 1.7E-17 3.6E-22 116.7 7.3 58 42-99 1-58 (58)
20 PF03051 Peptidase_C1_2: Pepti 99.7 1.2E-16 2.6E-21 154.5 12.8 179 144-330 56-400 (438)
21 smart00848 Inhibitor_I29 Cathe 99.6 4.1E-15 8.9E-20 104.1 5.5 57 42-98 1-57 (57)
22 COG3579 PepC Aminopeptidase C 99.0 3E-09 6.5E-14 97.2 9.3 75 145-220 59-162 (444)
23 KOG4128 Bleomycin hydrolases a 98.0 6.5E-06 1.4E-10 75.5 4.2 76 144-220 63-169 (457)
24 PF08127 Propeptide_C1: Peptid 96.8 0.0011 2.5E-08 42.5 2.9 36 70-108 3-38 (41)
25 PF05543 Peptidase_C47: Stapho 96.8 0.014 3.1E-07 49.4 9.7 120 148-317 18-146 (175)
26 PF13529 Peptidase_C39_2: Pept 96.7 0.021 4.5E-07 46.3 10.2 57 247-315 87-144 (144)
27 PF14399 Transpep_BrtH: NlpC/p 88.1 1.4 3.1E-05 41.2 6.7 46 249-300 78-124 (317)
28 PF12385 Peptidase_C70: Papain 79.5 28 0.0006 29.3 9.7 38 248-300 97-135 (166)
29 PF07172 GRP: Glycine rich pro 77.5 2.3 4.9E-05 32.7 2.7 17 6-22 3-19 (95)
30 PF09778 Guanylate_cyc_2: Guan 76.5 8.6 0.00019 34.0 6.4 61 248-313 112-180 (212)
31 COG4990 Uncharacterized protei 71.7 11 0.00024 32.4 5.5 53 242-317 116-169 (195)
32 cd00044 CysPc Calpains, domain 67.9 19 0.00041 33.8 7.1 29 288-317 235-263 (315)
33 cd02549 Peptidase_C39A A sub-f 59.1 31 0.00067 27.5 6.0 44 252-315 70-114 (141)
34 PF15240 Pro-rich: Proline-ric 58.6 6.4 0.00014 33.7 1.8 20 12-31 3-22 (179)
35 KOG4702 Uncharacterized conser 49.3 81 0.0018 22.6 5.7 32 40-72 29-60 (77)
36 PF14060 DUF4252: Domain of un 45.4 27 0.0006 28.8 3.6 34 7-48 1-34 (155)
37 PF13677 MotB_plug: Membrane M 44.7 62 0.0013 22.2 4.7 16 10-25 24-39 (58)
38 PF04202 Mfp-3: Foot protein 3 43.8 15 0.00033 25.8 1.5 21 8-28 3-23 (71)
39 PF01640 Peptidase_C10: Peptid 43.6 1.1E+02 0.0025 26.4 7.4 49 250-326 141-192 (192)
40 PF03058 Sar8_2: Sar8.2 family 41.7 56 0.0012 24.7 4.2 6 1-6 1-6 (93)
41 PF08139 LPAM_1: Prokaryotic m 40.3 27 0.00059 19.7 1.9 20 3-23 4-23 (25)
42 PF15284 PAGK: Phage-encoded v 39.4 33 0.00072 23.8 2.6 26 4-29 2-27 (61)
43 PF07438 DUF1514: Protein of u 32.3 1.6E+02 0.0035 20.8 5.0 17 9-25 4-20 (66)
44 smart00230 CysPc Calpain-like 30.5 84 0.0018 29.6 4.7 27 288-317 227-255 (318)
45 PF06143 Baculo_11_kDa: Baculo 29.9 92 0.002 23.3 3.8 16 56-71 67-82 (84)
46 CHL00038 psbL photosystem II p 27.5 94 0.002 19.3 2.8 20 4-23 12-31 (38)
47 PF03978 Borrelia_REV: Borreli 27.1 2.4E+02 0.0052 23.6 6.1 20 6-25 3-22 (160)
48 PF11337 DUF3139: Protein of u 26.7 1.7E+02 0.0038 21.5 5.0 13 36-48 34-46 (85)
49 PF07172 GRP: Glycine rich pro 25.7 81 0.0018 24.1 3.0 26 1-26 1-26 (95)
50 COG5510 Predicted small secret 24.6 1.2E+02 0.0025 19.7 3.0 21 6-26 3-23 (44)
51 PF12729 4HB_MCP_1: Four helix 24.5 77 0.0017 25.8 3.0 20 3-22 2-21 (181)
52 PF11873 DUF3393: Domain of un 23.3 86 0.0019 27.6 3.1 21 144-164 148-168 (204)
53 PF03040 CemA: CemA family; I 23.3 2.4E+02 0.0053 25.3 6.1 17 8-24 11-27 (230)
54 PF13623 SurA_N_2: SurA N-term 23.0 4.3E+02 0.0094 21.8 8.3 54 47-108 67-121 (145)
55 PF07351 DUF1480: Protein of u 21.8 2E+02 0.0044 21.0 4.2 23 278-300 27-49 (80)
56 PF06842 DUF1242: Protein of u 21.6 54 0.0012 20.3 1.1 13 13-25 2-14 (36)
57 PRK00404 tatB sec-independent 21.5 94 0.002 25.6 2.8 26 37-62 27-52 (141)
58 PF07423 DUF1510: Protein of u 20.3 1.2E+02 0.0026 27.0 3.4 27 4-30 11-37 (217)
59 COG4871 Uncharacterized protei 20.1 63 0.0014 27.2 1.5 14 147-160 137-152 (193)
No 1
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-84 Score=583.86 Aligned_cols=302 Identities=39% Similarity=0.752 Sum_probs=267.3
Q ss_pred CCchhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHccCCCCceEEEcccCCCCCHHHHhhhhcCCCCCCCC
Q 019112 33 MHEPSIVEKHEQWMAQHGRTYKDELEKAMRLTIFKQNLEYIEKANKEGNRTYKLGTNEFSDLTNEEFRASYTGYNRPVPS 112 (346)
Q Consensus 33 ~~~~~~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~~~s~~~g~N~fsd~t~~E~~~~~~~~~~~~~~ 112 (346)
.......+.|..|+.+|+|+|.+.+|..+|+.||++|+..+++++.....|...|+|+|||||+|||++++++.+.....
T Consensus 62 ~~~l~~~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvtqFSDlT~eEFkk~~l~~~~~~~~ 141 (372)
T KOG1542|consen 62 PRGLGLEDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVTQFSDLTEEEFKKIYLGVKRRGSK 141 (372)
T ss_pred CcccchHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCccchhhcCHHHHHHHhhcccccccc
Confidence 34455689999999999999999999999999999999999999886545889999999999999999999877653110
Q ss_pred CCcCCCCCCccccCCCCCCCCceeccccCCcccccCCCCCccHHHHHHHHHHHHHHHHhcCCCcccCHHHHhhcCCCCCC
Q 019112 113 VSRQSSRPSTFKYQNVTDVPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTDNNG 192 (346)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~v~pVkdQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~~c~~~~~g 192 (346)
.... ....+....+.||++||||++|.||||||||+||||||||+++++|+++.++++++++||||+|+||+..++|
T Consensus 142 ~~~~---~~~~~~~~~~~lP~~fDWR~kgaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~~d~g 218 (372)
T KOG1542|consen 142 LPGD---AAEAPIEPGESLPESFDWRDKGAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDSCDNG 218 (372)
T ss_pred Cccc---cccCcCCCCCCCCcccchhccCCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccCcCCc
Confidence 0011 1111123446899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHcCCCCCCCCcCCCCCCC-cccccccccceeeeceeEeCCCCcHHHHHHHHh-cCCeEEEEEeccc
Q 019112 193 CSGGLMDKAFEYIIENKGLATEADYPYQQEQG-TCDKQKEKAAAATIGKYEDLPKGDEHALLQAVT-KQPVSVCVEASGQ 270 (346)
Q Consensus 193 c~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~-~c~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~-~gPV~v~~~~~~~ 270 (346)
|+||.+..|++|+++..|+..|++|||++..+ .|... .....+.|.+|..++ .|+++|.+.|. +|||+|+|++.
T Consensus 219 C~GGl~~nA~~~~~~~gGL~~E~dYPY~g~~~~~C~~~-~~~~~v~I~~f~~l~-~nE~~ia~wLv~~GPi~vgiNa~-- 294 (372)
T KOG1542|consen 219 CNGGLMDNAFKYIKKAGGLEKEKDYPYTGKKGNQCHFD-KSKIVVSIKDFSMLS-NNEDQIAAWLVTFGPLSVGINAK-- 294 (372)
T ss_pred CCCCChhHHHHHHHHhCCccccccCCccccCCCccccc-hhhceEEEeccEecC-CCHHHHHHHHHhcCCeEEEEchH--
Confidence 99999999999988888999999999999887 99988 467889999999998 58999998886 89999999975
Q ss_pred cccccCCceEeC---CCCCC-CCeeEEEEEeeccccCC-CccEEEEEcCCCCCcCcCceEEEEcCCCcccccCcceeee
Q 019112 271 AFRFYKRGVLNA---ECGDN-CDHGVAVVGFGTAEEED-GAKYWLIKNSWGETWGESGYIRILRDEGLCGIATEASYPV 344 (346)
Q Consensus 271 ~f~~y~~Gi~~~---~~~~~-~~Hav~iVGyg~~~~~~-g~~ywivkNSWG~~WGe~Gy~~i~~~~~~cgi~~~~~~p~ 344 (346)
.+++|.+||..+ .|+.. ++|||+|||||.. . +++|||||||||++|||+||+|+.||.|.|||+++++-+.
T Consensus 295 ~mQ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~~---g~~~PYWIVKNSWG~~WGE~GY~~l~RG~N~CGi~~mvss~~ 370 (372)
T KOG1542|consen 295 PMQFYRGGVSCPSKYICSPKLLNHAVLLVGYGSS---GYEKPYWIVKNSWGTSWGEKGYYKLCRGSNACGIADMVSSAA 370 (372)
T ss_pred HHHHhcccccCCCcccCCccccCceEEEEeecCC---CCCCceEEEECCccccccccceEEEeccccccccccchhhhh
Confidence 799999999998 38865 8999999999998 5 7899999999999999999999999999999999987654
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=4.8e-81 Score=589.38 Aligned_cols=320 Identities=35% Similarity=0.651 Sum_probs=260.5
Q ss_pred HHHHHHHhhhhccCCCCCchhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHccCCCCceEEEcccCCCCCH
Q 019112 17 IILVITCASQVVSGRSMHEPSIVEKHEQWMAQHGRTYKDELEKAMRLTIFKQNLEYIEKANKEGNRTYKLGTNEFSDLTN 96 (346)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~~~s~~~g~N~fsd~t~ 96 (346)
++|+++-+.+.......-..++.++|++|+++|+|.|.+.+|+.+|+.||++|+++|++||++. .+|++|+|+|+|||.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~-~~~~lg~N~FaDlT~ 91 (348)
T PTZ00203 13 VVCVVLAAACAPARAIYVGTPAAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQARN-PHARFGITKFFDLSE 91 (348)
T ss_pred HHHHHHHHhhccchhcccccHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhccC-CCeEEeccccccCCH
Confidence 3444444444333333347888999999999999999988899999999999999999999864 699999999999999
Q ss_pred HHHhhhhcCCCCCCCCCCcCCCCCCccccCCCCCCCCceeccccCCcccccCCCCCccHHHHHHHHHHHHHHHHhcCCCc
Q 019112 97 EEFRASYTGYNRPVPSVSRQSSRPSTFKYQNVTDVPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLI 176 (346)
Q Consensus 97 ~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~v~pVkdQg~cGsCwAfA~~~~le~~~~~~~~~~~ 176 (346)
|||.+++++......................+.+||++||||++|+|+||||||.||||||||+++++|+++++++++.+
T Consensus 92 eEf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~DWR~~g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~~~ 171 (348)
T PTZ00203 92 AEFAARYLNGAAYFAAAKQHAGQHYRKARADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLV 171 (348)
T ss_pred HHHHHHhcCCCcccccccccccccccccccccccCCCCCcCCcCCCCCCccccCCCccHHHHhhHHHHHHHHHHhcCCCc
Confidence 99998776421111000000000000001123468999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHhhcCCCCCCCCCCchHHHHHHHHHc--CCCCCCCCcCCCCCCC---cccccccccceeeeceeEeCCCCcHHH
Q 019112 177 ELSEQQLVDCSTDNNGCSGGLMDKAFEYIIEN--KGLATEADYPYQQEQG---TCDKQKEKAAAATIGKYEDLPKGDEHA 251 (346)
Q Consensus 177 ~lS~q~l~~c~~~~~gc~GG~~~~a~~~~~~~--~Gi~~e~~yPY~~~~~---~c~~~~~~~~~~~i~~y~~v~~~~~~~ 251 (346)
+||+|+|+||+..+.||+||++..|++|+.++ +|+++|++|||.+.++ .|...........+++|..++. +++.
T Consensus 172 ~LSeQqLvdC~~~~~GC~GG~~~~a~~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~~~~~~~~i~~~~~i~~-~e~~ 250 (348)
T PTZ00203 172 RLSEQQLVSCDHVDNGCGGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDGYVSMES-SERV 250 (348)
T ss_pred cCCHHHHHhccCCCCCCCCCCHHHHHHHHHHhcCCCCCccccCCCccCCCCCCcCCCCcccccceEecceeecCc-CHHH
Confidence 99999999999878899999999999999764 5689999999998765 5764322223467888988874 7888
Q ss_pred HHHHHh-cCCeEEEEEeccccccccCCceEeCCCC-CCCCeeEEEEEeeccccCCCccEEEEEcCCCCCcCcCceEEEEc
Q 019112 252 LLQAVT-KQPVSVCVEASGQAFRFYKRGVLNAECG-DNCDHGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRILR 329 (346)
Q Consensus 252 i~~~l~-~gPV~v~~~~~~~~f~~y~~Gi~~~~~~-~~~~Hav~iVGyg~~~~~~g~~ywivkNSWG~~WGe~Gy~~i~~ 329 (346)
|+.+|. +|||+++|++. +|++|++|||+. |. ..++|||+|||||.+ +|.+|||||||||++|||+|||||+|
T Consensus 251 ~~~~l~~~GPv~v~i~a~--~f~~Y~~GIy~~-c~~~~~nHaVliVGYG~~---~g~~YWiikNSWG~~WGe~GY~ri~r 324 (348)
T PTZ00203 251 MAAWLAKNGPISIAVDAS--SFMSYHSGVLTS-CIGEQLNHGVLLVGYNMT---GEVPYWVIKNSWGEDWGEKGYVRVTM 324 (348)
T ss_pred HHHHHHhCCCEEEEEEhh--hhcCccCceeec-cCCCCCCeEEEEEEEecC---CCceEEEEEcCCCCCcCcCceEEEEc
Confidence 999997 79999999985 799999999985 65 457999999999987 78999999999999999999999999
Q ss_pred CCCcccccCcceeee
Q 019112 330 DEGLCGIATEASYPV 344 (346)
Q Consensus 330 ~~~~cgi~~~~~~p~ 344 (346)
+.|.|||++.++...
T Consensus 325 g~n~Cgi~~~~~~~~ 339 (348)
T PTZ00203 325 GVNACLLTGYPVSVH 339 (348)
T ss_pred CCCcccccceEEEEe
Confidence 999999998777644
No 3
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=5.8e-79 Score=591.07 Aligned_cols=309 Identities=40% Similarity=0.702 Sum_probs=260.1
Q ss_pred CCCchhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHccCCCCceEEEcccCCCCCHHHHhhhhcCCCCCC-
Q 019112 32 SMHEPSIVEKHEQWMAQHGRTYKDELEKAMRLTIFKQNLEYIEKANKEGNRTYKLGTNEFSDLTNEEFRASYTGYNRPV- 110 (346)
Q Consensus 32 ~~~~~~~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~~~s~~~g~N~fsd~t~~E~~~~~~~~~~~~- 110 (346)
+....+....|++|+++|+|+|.+.+|+.+|+.||++|+++|++||++++.+|++|+|+|+|||.|||++++++.....
T Consensus 159 ~~~n~e~~~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~~ty~lgiNqFsDlT~EEF~~~~l~~~~~~~ 238 (489)
T PTZ00021 159 LMTNLENVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLSFEEFKKKYLTLKSFDF 238 (489)
T ss_pred hccChHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeccccccCCHHHHHHHhcccccccc
Confidence 3566777889999999999999999999999999999999999999876689999999999999999998887654211
Q ss_pred CCCCcCCCCCC-------ccccCCCCCCCCceeccccCCcccccCCCCCccHHHHHHHHHHHHHHHHhcCCCcccCHHHH
Q 019112 111 PSVSRQSSRPS-------TFKYQNVTDVPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQL 183 (346)
Q Consensus 111 ~~~~~~~~~~~-------~~~~~~~~~lP~~~Dwr~~g~v~pVkdQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l 183 (346)
........+.. ..........|+++|||+.|.|+||||||.||||||||+++++|++++++++..++||+|+|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~s~DWR~~g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~v~LSeQqL 318 (489)
T PTZ00021 239 KSNGKKSPRVINYDDVIKKYKPKDATFDHAKYDWRLHNGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQEL 318 (489)
T ss_pred ccccccccccccccccccccccccccCCccccccccCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCcccCHHHH
Confidence 00000000000 00000111249999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCchHHHHHHHHHcCCCCCCCCcCCCCC-CCcccccccccceeeeceeEeCCCCcHHHHHHHHh-cCCe
Q 019112 184 VDCSTDNNGCSGGLMDKAFEYIIENKGLATEADYPYQQE-QGTCDKQKEKAAAATIGKYEDLPKGDEHALLQAVT-KQPV 261 (346)
Q Consensus 184 ~~c~~~~~gc~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~-~~~c~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~-~gPV 261 (346)
+||+..+.||+||++..|+.|+.+++|+++|++|||.+. ++.|... .....+++.+|..++ +++|+++|. .|||
T Consensus 319 VDCs~~n~GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~~~~C~~~-~~~~~~~i~~y~~i~---~~~lk~al~~~GPV 394 (489)
T PTZ00021 319 VDCSFKNNGCYGGLIPNAFEDMIELGGLCSEDDYPYVSDTPELCNID-RCKEKYKIKSYVSIP---EDKFKEAIRFLGPI 394 (489)
T ss_pred hhhccCCCCCCCcchHhhhhhhhhccccCcccccCccCCCCCccccc-cccccceeeeEEEec---HHHHHHHHHhcCCe
Confidence 999988899999999999999987779999999999987 4789754 234457888998886 467999998 7999
Q ss_pred EEEEEeccccccccCCceEeCCCCCCCCeeEEEEEeecccc-------CCCccEEEEEcCCCCCcCcCceEEEEcCC---
Q 019112 262 SVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEE-------EDGAKYWLIKNSWGETWGESGYIRILRDE--- 331 (346)
Q Consensus 262 ~v~~~~~~~~f~~y~~Gi~~~~~~~~~~Hav~iVGyg~~~~-------~~g~~ywivkNSWG~~WGe~Gy~~i~~~~--- 331 (346)
+|++++. .+|++|++|||+++|+..++|||+|||||++.. ..+.+|||||||||++|||+|||||+|+.
T Consensus 395 sv~i~a~-~~f~~YkgGIy~~~C~~~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~g~ 473 (489)
T PTZ00021 395 SVSIAVS-DDFAFYKGGIFDGECGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIETDENGL 473 (489)
T ss_pred EEEEEee-cccccCCCCcCCCCCCCccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeEEEEEcCCCCC
Confidence 9999997 689999999999889888999999999997521 12357999999999999999999999995
Q ss_pred -CcccccCcceeeee
Q 019112 332 -GLCGIATEASYPVA 345 (346)
Q Consensus 332 -~~cgi~~~~~~p~~ 345 (346)
|+|||++.++||++
T Consensus 474 ~n~CGI~t~a~yP~~ 488 (489)
T PTZ00021 474 MKTCSLGTEAYVPLI 488 (489)
T ss_pred CCCCCCcccceeEec
Confidence 59999999999985
No 4
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=1.9e-78 Score=585.76 Aligned_cols=305 Identities=36% Similarity=0.659 Sum_probs=256.4
Q ss_pred CCchhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHccCCCCceEEEcccCCCCCHHHHhhhhcCCCCCCCC
Q 019112 33 MHEPSIVEKHEQWMAQHGRTYKDELEKAMRLTIFKQNLEYIEKANKEGNRTYKLGTNEFSDLTNEEFRASYTGYNRPVPS 112 (346)
Q Consensus 33 ~~~~~~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~~~s~~~g~N~fsd~t~~E~~~~~~~~~~~~~~ 112 (346)
..+.++..+|++|+++|+|.|.+.+|+.+|+.+|++|+++|++||. +.+|++|+|+|+|||.|||.+++++...+...
T Consensus 117 ~~e~e~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~--~~~y~lgiN~FsDlT~eEF~~~~~~~~~~~~~ 194 (448)
T PTZ00200 117 KLEFEVYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKG--DEPYSKEINKFSDLTEEEFRKLFPVIKVPPKS 194 (448)
T ss_pred cchHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcC--cCCeEEeccccccCCHHHHHHHhccCCCcccc
Confidence 5567778899999999999999999999999999999999999996 36899999999999999999887764432110
Q ss_pred C---C------cC-CCCC--Ccccc-----CCC----CCCCCceeccccCCcccccCCC-CCccHHHHHHHHHHHHHHHH
Q 019112 113 V---S------RQ-SSRP--STFKY-----QNV----TDVPTSIDWREKGAVTHIKNQG-HCGSCWAFSAVAAVEGITQI 170 (346)
Q Consensus 113 ~---~------~~-~~~~--~~~~~-----~~~----~~lP~~~Dwr~~g~v~pVkdQg-~cGsCwAfA~~~~le~~~~~ 170 (346)
. . +. .... ..... ..+ ..+|++||||+.|.++|||||| .||||||||+++++|+++++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~vtpVkdQG~~CGSCWAFat~~aiEs~~~i 274 (448)
T PTZ00200 195 NSTSHNNDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRADAVTKVKDQGLNCGSCWAFSSVGSVESLYKI 274 (448)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCccCCCCCCCCCcccCCCccchHHHHhHHHHHHHHHHH
Confidence 0 0 00 0000 00000 001 1369999999999999999999 99999999999999999999
Q ss_pred hcCCCcccCHHHHhhcCCCCCCCCCCchHHHHHHHHHcCCCCCCCCcCCCCCCCcccccccccceeeeceeEeCCCCcHH
Q 019112 171 TGGKLIELSEQQLVDCSTDNNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEH 250 (346)
Q Consensus 171 ~~~~~~~lS~q~l~~c~~~~~gc~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~c~~~~~~~~~~~i~~y~~v~~~~~~ 250 (346)
+++..++||+|+|+||+..+.||+||++..|++|+.++ |+++|++|||.+..+.|.... .....|.+|..++ +.+
T Consensus 275 ~~~~~~~LSeQqLvDC~~~~~GC~GG~~~~A~~yi~~~-Gi~~e~~YPY~~~~~~C~~~~--~~~~~i~~y~~~~--~~~ 349 (448)
T PTZ00200 275 YRDKSVDLSEQELVNCDTKSQGCSGGYPDTALEYVKNK-GLSSSSDVPYLAKDGKCVVSS--TKKVYIDSYLVAK--GKD 349 (448)
T ss_pred hcCCCeecCHHHHhhccCccCCCCCCcHHHHHHHHhhc-CccccccCCCCCCCCCCcCCC--CCeeEecceEecC--HHH
Confidence 99999999999999999878999999999999999775 999999999999999997642 3345688887664 346
Q ss_pred HHHHHHhcCCeEEEEEeccccccccCCceEeCCCCCCCCeeEEEEEeeccccCCCccEEEEEcCCCCCcCcCceEEEEcC
Q 019112 251 ALLQAVTKQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRILRD 330 (346)
Q Consensus 251 ~i~~~l~~gPV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~Hav~iVGyg~~~~~~g~~ywivkNSWG~~WGe~Gy~~i~~~ 330 (346)
.+++++..|||+|++++. .+|+.|++|||+++|+..++|||+|||||.+. .+|.+|||||||||++|||+|||||+|+
T Consensus 350 ~l~~~l~~GPV~v~i~~~-~~f~~Yk~GIy~~~C~~~~nHaV~lVGyG~d~-~~g~~YWIIkNSWG~~WGe~GY~ri~r~ 427 (448)
T PTZ00200 350 VLNKSLVISPTVVYIAVS-RELLKYKSGVYNGECGKSLNHAVLLVGEGYDE-KTKKRYWIIKNSWGTDWGENGYMRLERT 427 (448)
T ss_pred HHHHHHhcCCEEEEeecc-cccccCCCCccccccCCCCcEEEEEEEecccC-CCCCceEEEEcCCCCCcccCeeEEEEeC
Confidence 677777789999999997 78999999999988987799999999999642 2678999999999999999999999996
Q ss_pred ---CCcccccCcceeeeeC
Q 019112 331 ---EGLCGIATEASYPVAM 346 (346)
Q Consensus 331 ---~~~cgi~~~~~~p~~~ 346 (346)
.|.|||++.+.||+++
T Consensus 428 ~~g~n~CGI~~~~~~P~~~ 446 (448)
T PTZ00200 428 NEGTDKCGILTVGLTPVFY 446 (448)
T ss_pred CCCCCcCCccccceeeEEe
Confidence 5899999999999874
No 5
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-71 Score=518.32 Aligned_cols=287 Identities=45% Similarity=0.837 Sum_probs=251.7
Q ss_pred HHHhCCccCCHHHHHHHHHHHHHHHHHHHHHccCCCCceEEEcccCCCCCHHHHhhhhcCCCCCCCCCCcCCCCCCcccc
Q 019112 46 MAQHGRTYKDELEKAMRLTIFKQNLEYIEKANKEGNRTYKLGTNEFSDLTNEEFRASYTGYNRPVPSVSRQSSRPSTFKY 125 (346)
Q Consensus 46 ~~~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~~~s~~~g~N~fsd~t~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (346)
+.+|.+.|.+..|+..|+.+|.+|++.|+.||.....+|++|+|+|+|++.+|+++.+.+.+++... . ......
T Consensus 30 ~~~~~~~y~~~~~~~~r~~~f~~n~~~~~~~n~~~~~~~~~g~n~~~d~~~ee~~~~~~~~~~~~~~--~----~~~~~~ 103 (325)
T KOG1543|consen 30 LVKFLKRYEDRVEKKARRAIFKENLQKIESHNLKYVLSFLMGVNQFADLTTEEFKRKKTGKKPPEIK--R----DKFTEK 103 (325)
T ss_pred hhhhccccccHHHHHHHHHHHHHHHHHHHhhhhhhceeeeeccccccccchHHHHHhhccccCcccc--c----cccccc
Confidence 6677777777779999999999999999999998678999999999999999999988777655431 1 111112
Q ss_pred CCCCCCCCceeccccC-CcccccCCCCCccHHHHHHHHHHHHHHHHhcC-CCcccCHHHHhhcCCC-CCCCCCCchHHHH
Q 019112 126 QNVTDVPTSIDWREKG-AVTHIKNQGHCGSCWAFSAVAAVEGITQITGG-KLIELSEQQLVDCSTD-NNGCSGGLMDKAF 202 (346)
Q Consensus 126 ~~~~~lP~~~Dwr~~g-~v~pVkdQg~cGsCwAfA~~~~le~~~~~~~~-~~~~lS~q~l~~c~~~-~~gc~GG~~~~a~ 202 (346)
....++|++||||++| .++||||||.||||||||++++||++++|+++ .++.||+|+|+||+.. ++||+||.+..|+
T Consensus 104 ~~~~~~p~s~DwR~~~~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~~~~GC~GG~~~~A~ 183 (325)
T KOG1543|consen 104 LDGDDLPDSFDWRDKGAVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGECGDGCNGGEPKNAF 183 (325)
T ss_pred cchhhCCCCccccccCCcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCCCCCCcCCCCHHHHH
Confidence 2345799999999996 55669999999999999999999999999999 8999999999999996 8899999999999
Q ss_pred HHHHHcCCCCC-CCCcCCCCCCCcccccccccceeeeceeEeCCCCcHHHHHHHHh-cCCeEEEEEeccccccccCCceE
Q 019112 203 EYIIENKGLAT-EADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEHALLQAVT-KQPVSVCVEASGQAFRFYKRGVL 280 (346)
Q Consensus 203 ~~~~~~~Gi~~-e~~yPY~~~~~~c~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Gi~ 280 (346)
+|+.++ |+++ +.+|||.+..+.|..... .....+.++..++.+ +++|+.+++ +|||+|+|++.. +|++|++|||
T Consensus 184 ~yi~~~-G~~t~~~~Ypy~~~~~~C~~~~~-~~~~~~~~~~~~~~~-e~~i~~~v~~~GPv~v~~~a~~-~F~~Y~~GVy 259 (325)
T KOG1543|consen 184 KYIKKN-GGVTECENYPYIGKDGTCKSNKK-DKTVTIKGFYNVPAN-EEAIAEAVAKNGPVSVAIDAYE-DFSLYKGGVY 259 (325)
T ss_pred HHHHHh-CCCCCCcCCCCcCCCCCccCCCc-cceeEeeeeeecCcC-HHHHHHHHHhcCCeEEEEeehh-hhhhccCceE
Confidence 999998 6666 999999999999998743 566778888888854 999999998 799999999994 9999999999
Q ss_pred eCCCC-C-CCCeeEEEEEeeccccCCCccEEEEEcCCCCCcCcCceEEEEcCCCcccccCccee-eee
Q 019112 281 NAECG-D-NCDHGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRILRDEGLCGIATEASY-PVA 345 (346)
Q Consensus 281 ~~~~~-~-~~~Hav~iVGyg~~~~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~cgi~~~~~~-p~~ 345 (346)
.+++. . .++|||+|||||.. +|.+|||||||||+.|||+|||||.|+.+.|+|++.++| |+.
T Consensus 260 ~~~~~~~~~~~Hav~iVGyG~~---~~~~YWivkNSWG~~WGe~Gy~ri~r~~~~~~I~~~~~~~p~~ 324 (325)
T KOG1543|consen 260 AEEKGDDKEGDHAVLIVGYGTG---DGVDYWIVKNSWGTDWGEKGYFRIARGVNKCGIASEASYGPIK 324 (325)
T ss_pred eCCCCCCCCCCceEEEEEEcCC---CCceeEEEEcCCCCCcccCceEEEecCCCchhhhcccccCCCC
Confidence 99854 4 59999999999993 789999999999999999999999999999999999999 764
No 6
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=4.6e-59 Score=423.52 Aligned_cols=211 Identities=34% Similarity=0.688 Sum_probs=182.0
Q ss_pred CCCceeccccC----CcccccCCCCCccHHHHHHHHHHHHHHHHhcCC------CcccCHHHHhhcCCCCCCCCCCchHH
Q 019112 131 VPTSIDWREKG----AVTHIKNQGHCGSCWAFSAVAAVEGITQITGGK------LIELSEQQLVDCSTDNNGCSGGLMDK 200 (346)
Q Consensus 131 lP~~~Dwr~~g----~v~pVkdQg~cGsCwAfA~~~~le~~~~~~~~~------~~~lS~q~l~~c~~~~~gc~GG~~~~ 200 (346)
||++||||+.+ +|+||||||.||+|||||+++++|++++++++. .+.||+|+|++|...++||+||++..
T Consensus 1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~~~~GC~GG~~~~ 80 (243)
T cd02621 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQYSQGCDGGFPFL 80 (243)
T ss_pred CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcCCCCCCCCCCHHH
Confidence 79999999988 999999999999999999999999999998776 68899999999998788999999999
Q ss_pred HHHHHHHcCCCCCCCCcCCCC-CCCcccccccccceeeeceeEeCC----CCcHHHHHHHHh-cCCeEEEEEeccccccc
Q 019112 201 AFEYIIENKGLATEADYPYQQ-EQGTCDKQKEKAAAATIGKYEDLP----KGDEHALLQAVT-KQPVSVCVEASGQAFRF 274 (346)
Q Consensus 201 a~~~~~~~~Gi~~e~~yPY~~-~~~~c~~~~~~~~~~~i~~y~~v~----~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~ 274 (346)
|++|+.+. |+++|++|||.. ..+.|..........++..|..+. ..++++|+++|. +|||+++|++. ++|++
T Consensus 81 a~~~~~~~-Gi~~e~~yPY~~~~~~~C~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~-~~F~~ 158 (243)
T cd02621 81 VGKFAEDF-GIVTEDYFPYTADDDRPCKASPSECRRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVY-SDFDF 158 (243)
T ss_pred HHHHHHhc-CcCCCceeCCCCCCCCCCCCCccccccccccceeEcccccccCCHHHHHHHHHHcCCEEEEEEec-ccccc
Confidence 99999875 999999999998 677897542123334444444442 247889999997 79999999998 68999
Q ss_pred cCCceEeCC-----CCC---------CCCeeEEEEEeeccccCCCccEEEEEcCCCCCcCcCceEEEEcCCCcccccCcc
Q 019112 275 YKRGVLNAE-----CGD---------NCDHGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRILRDEGLCGIATEA 340 (346)
Q Consensus 275 y~~Gi~~~~-----~~~---------~~~Hav~iVGyg~~~~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~cgi~~~~ 340 (346)
|++|||+.+ |+. .++|||+|||||++.. +|.+|||||||||++|||+|||||+|+.|.|||++++
T Consensus 159 Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~-~g~~YWiirNSWG~~WGe~Gy~~i~~~~~~cgi~~~~ 237 (243)
T cd02621 159 YKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEI-KGEKYWIVKNSWGSSWGEKGYFKIRRGTNECGIESQA 237 (243)
T ss_pred cCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCC-CCCcEEEEEcCCCCCCCcCCeEEEecCCcccCcccce
Confidence 999999875 532 4799999999998721 3889999999999999999999999999999999999
Q ss_pred eeee
Q 019112 341 SYPV 344 (346)
Q Consensus 341 ~~p~ 344 (346)
++.+
T Consensus 238 ~~~~ 241 (243)
T cd02621 238 VFAY 241 (243)
T ss_pred Eeec
Confidence 7654
No 7
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=2.1e-58 Score=417.86 Aligned_cols=208 Identities=29% Similarity=0.636 Sum_probs=182.1
Q ss_pred CCCceeccccC---CcccccCCC---CCccHHHHHHHHHHHHHHHHhcC---CCcccCHHHHhhcCCCCCCCCCCchHHH
Q 019112 131 VPTSIDWREKG---AVTHIKNQG---HCGSCWAFSAVAAVEGITQITGG---KLIELSEQQLVDCSTDNNGCSGGLMDKA 201 (346)
Q Consensus 131 lP~~~Dwr~~g---~v~pVkdQg---~cGsCwAfA~~~~le~~~~~~~~---~~~~lS~q~l~~c~~~~~gc~GG~~~~a 201 (346)
||++||||+.+ +++|||||| .||||||||++++||+++.++++ ..+.||+|+|+||+. +.+|+||++..+
T Consensus 1 lP~~~Dwr~~~~~~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~-~~gC~GG~~~~a 79 (239)
T cd02698 1 LPKSWDWRNVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG-GGSCHGGDPGGV 79 (239)
T ss_pred CCCCcccccCCCCcccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC-CCCccCcCHHHH
Confidence 69999999987 899999998 89999999999999999998765 357899999999998 789999999999
Q ss_pred HHHHHHcCCCCCCCCcCCCCCCCcccccc--------------cccceeeeceeEeCCCCcHHHHHHHHh-cCCeEEEEE
Q 019112 202 FEYIIENKGLATEADYPYQQEQGTCDKQK--------------EKAAAATIGKYEDLPKGDEHALLQAVT-KQPVSVCVE 266 (346)
Q Consensus 202 ~~~~~~~~Gi~~e~~yPY~~~~~~c~~~~--------------~~~~~~~i~~y~~v~~~~~~~i~~~l~-~gPV~v~~~ 266 (346)
++|+.++ |+++|++|||......|.... .....++++.|..++ +++.|+++|. +|||+++|.
T Consensus 80 ~~~~~~~-Gl~~e~~yPY~~~~~~C~~~~~~~~c~~~~~c~~~~~~~~~~i~~~~~~~--~~~~i~~~l~~~GPV~v~i~ 156 (239)
T cd02698 80 YEYAHKH-GIPDETCNPYQAKDGECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGSVS--GRDKMMAEIYARGPISCGIM 156 (239)
T ss_pred HHHHHHc-CcCCCCeeCCcCCCCCCcCCCCCCCcccCcccccccccceEEeeeceecC--CHHHHHHHHHHcCCEEEEEE
Confidence 9999885 999999999998776665310 012345677777775 5788999886 899999999
Q ss_pred eccccccccCCceEeCC-CCCCCCeeEEEEEeeccccCCCccEEEEEcCCCCCcCcCceEEEEcCC-----CcccccCcc
Q 019112 267 ASGQAFRFYKRGVLNAE-CGDNCDHGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRILRDE-----GLCGIATEA 340 (346)
Q Consensus 267 ~~~~~f~~y~~Gi~~~~-~~~~~~Hav~iVGyg~~~~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~-----~~cgi~~~~ 340 (346)
+. .+|+.|++|||+.+ |...++|||+|||||++ .+|.+|||||||||++|||+|||||+|+. |+|||++++
T Consensus 157 ~~-~~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG~~--~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~~ 233 (239)
T cd02698 157 AT-EALENYTGGVYKEYVQDPLINHIISVAGWGVD--ENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEEDC 233 (239)
T ss_pred ec-ccccccCCeEEccCCCCCcCCeEEEEEEEEec--CCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccce
Confidence 98 58999999999886 55678999999999987 23899999999999999999999999998 999999999
Q ss_pred eeeee
Q 019112 341 SYPVA 345 (346)
Q Consensus 341 ~~p~~ 345 (346)
.|+..
T Consensus 234 ~~~~~ 238 (239)
T cd02698 234 AWADP 238 (239)
T ss_pred EEEee
Confidence 99865
No 8
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=7.7e-58 Score=406.63 Aligned_cols=206 Identities=57% Similarity=1.093 Sum_probs=189.7
Q ss_pred CCceeccccCCcccccCCCCCccHHHHHHHHHHHHHHHHhcCCCcccCHHHHhhcCCC-CCCCCCCchHHHHHHHHHcCC
Q 019112 132 PTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD-NNGCSGGLMDKAFEYIIENKG 210 (346)
Q Consensus 132 P~~~Dwr~~g~v~pVkdQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~~c~~~-~~gc~GG~~~~a~~~~~~~~G 210 (346)
|++||||+.+.++||+|||.||+|||||++++||++++++++...+||+|+|++|... +.+|.||+...|++++.+. |
T Consensus 1 P~~~d~r~~~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~gC~GG~~~~a~~~~~~~-G 79 (210)
T cd02248 1 PESVDWREKGAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTSGNNGCNGGNPDNAFEYVKNG-G 79 (210)
T ss_pred CCcccCCcCCCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCCCCCCCCCCCHHHhHHHHHHC-C
Confidence 8899999999999999999999999999999999999999988899999999999986 7899999999999988765 9
Q ss_pred CCCCCCcCCCCCCCcccccccccceeeeceeEeCCCCcHHHHHHHHh-cCCeEEEEEeccccccccCCceEeCC-C-CCC
Q 019112 211 LATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEHALLQAVT-KQPVSVCVEASGQAFRFYKRGVLNAE-C-GDN 287 (346)
Q Consensus 211 i~~e~~yPY~~~~~~c~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Gi~~~~-~-~~~ 287 (346)
+++|++|||......|... ......++.+|..++..+.++||++|. +|||++++.+. ++|+.|++|||..+ | ...
T Consensus 80 i~~e~~yPY~~~~~~C~~~-~~~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~-~~f~~y~~Giy~~~~~~~~~ 157 (210)
T cd02248 80 LASESDYPYTGKDGTCKYN-SSKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDAS-SSFQFYKGGIYSGPCCSNTN 157 (210)
T ss_pred cCccccCCccCCCCCccCC-CCcccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecC-cccccCCCCceeCCCCCCCc
Confidence 9999999999988889876 345678999999998767899999998 79999999998 69999999999987 4 356
Q ss_pred CCeeEEEEEeeccccCCCccEEEEEcCCCCCcCcCceEEEEcCCCcccccCcceee
Q 019112 288 CDHGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRILRDEGLCGIATEASYP 343 (346)
Q Consensus 288 ~~Hav~iVGyg~~~~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~cgi~~~~~~p 343 (346)
++|||+|||||++ .|.+|||||||||+.||++|||||+|+.|.|||++.+.||
T Consensus 158 ~~Hav~iVGy~~~---~~~~ywiv~NSWG~~WG~~Gy~~i~~~~~~cgi~~~~~~~ 210 (210)
T cd02248 158 LNHAVLLVGYGTE---NGVDYWIVKNSWGTSWGEKGYIRIARGSNLCGIASYASYP 210 (210)
T ss_pred CCEEEEEEEEeec---CCceEEEEEcCCCCccccCcEEEEEcCCCccCceeeeecC
Confidence 7999999999998 5889999999999999999999999999999999998887
No 9
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=2e-57 Score=410.71 Aligned_cols=204 Identities=37% Similarity=0.747 Sum_probs=174.9
Q ss_pred CCceecccc--CC--cccccCCCCCccHHHHHHHHHHHHHHHHhcC--CCcccCHHHHhhcCCC-CCCCCCCchHHHHHH
Q 019112 132 PTSIDWREK--GA--VTHIKNQGHCGSCWAFSAVAAVEGITQITGG--KLIELSEQQLVDCSTD-NNGCSGGLMDKAFEY 204 (346)
Q Consensus 132 P~~~Dwr~~--g~--v~pVkdQg~cGsCwAfA~~~~le~~~~~~~~--~~~~lS~q~l~~c~~~-~~gc~GG~~~~a~~~ 204 (346)
|++||||+. ++ |+||+|||.||+|||||++++||+++.++++ +.+.||+|+|+||+.. +.||+||++..|++|
T Consensus 1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~~~~gC~GG~~~~a~~~ 80 (236)
T cd02620 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSGCGDGCNGGYPDAAWKY 80 (236)
T ss_pred CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCCCCCCCCCCCHHHHHHH
Confidence 889999997 44 4599999999999999999999999999887 7789999999999986 789999999999999
Q ss_pred HHHcCCCCCCCCcCCCCCCCc------------------cccccc---ccceeeeceeEeCCCCcHHHHHHHHh-cCCeE
Q 019112 205 IIENKGLATEADYPYQQEQGT------------------CDKQKE---KAAAATIGKYEDLPKGDEHALLQAVT-KQPVS 262 (346)
Q Consensus 205 ~~~~~Gi~~e~~yPY~~~~~~------------------c~~~~~---~~~~~~i~~y~~v~~~~~~~i~~~l~-~gPV~ 262 (346)
+.++ |+++|++|||...+.. |..... .....++..+..+. .++++||.+|. +|||+
T Consensus 81 i~~~-G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~-~~~~~ik~~l~~~GPv~ 158 (236)
T cd02620 81 LTTT-GVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVP-SDETDIMKEIMTNGPVQ 158 (236)
T ss_pred HHhc-CCCcCCEecCcCCCCccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeecceeeeC-CHHHHHHHHHHHCCCeE
Confidence 9876 9999999999876543 322210 11233455555565 46889999997 89999
Q ss_pred EEEEeccccccccCCceEeCCCC-CCCCeeEEEEEeeccccCCCccEEEEEcCCCCCcCcCceEEEEcCCCcccccCcce
Q 019112 263 VCVEASGQAFRFYKRGVLNAECG-DNCDHGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRILRDEGLCGIATEAS 341 (346)
Q Consensus 263 v~~~~~~~~f~~y~~Gi~~~~~~-~~~~Hav~iVGyg~~~~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~cgi~~~~~ 341 (346)
++|.+. ++|+.|++|||+.+|+ ..++|||+|||||++ +|.+|||||||||++|||+|||||+|+.|.|||+++++
T Consensus 159 v~i~~~-~~f~~Y~~Giy~~~~~~~~~~HaV~iVGyg~~---~g~~YWivrNSWG~~WGe~Gy~ri~~~~~~cgi~~~~~ 234 (236)
T cd02620 159 AAFTVY-EDFLYYKSGVYQHTSGKQLGGHAVKIIGWGVE---NGVPYWLAANSWGTDWGENGYFRILRGSNECGIESEVV 234 (236)
T ss_pred EEEEec-hhhhhcCCcEEeecCCCCcCCeEEEEEEEecc---CCeeEEEEEeCCCCCCCCCcEEEEEccCccccccccee
Confidence 999996 7999999999987655 346899999999988 78999999999999999999999999999999999875
No 10
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=5.6e-56 Score=396.28 Aligned_cols=211 Identities=42% Similarity=0.878 Sum_probs=184.5
Q ss_pred CCCceecccc-CCcccccCCCCCccHHHHHHHHHHHHHHHHhc-CCCcccCHHHHhhcCC-CCCCCCCCchHHHHHHHHH
Q 019112 131 VPTSIDWREK-GAVTHIKNQGHCGSCWAFSAVAAVEGITQITG-GKLIELSEQQLVDCST-DNNGCSGGLMDKAFEYIIE 207 (346)
Q Consensus 131 lP~~~Dwr~~-g~v~pVkdQg~cGsCwAfA~~~~le~~~~~~~-~~~~~lS~q~l~~c~~-~~~gc~GG~~~~a~~~~~~ 207 (346)
||++||||+. +.++||+||+.||+|||||+++++|++++++. ...++||+|+|++|.. .+.+|+||++..|++++++
T Consensus 1 lP~~~D~r~~~~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~~~~~~c~gg~~~~a~~~~~~ 80 (219)
T PF00112_consen 1 LPKSFDWRDKGGRITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSNKYNKGCDGGSPFDALKYIKN 80 (219)
T ss_dssp STSSEEGGGTTTCSG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHSTGTSSTTBBBEHHHHHHHHHH
T ss_pred CCCCEecccCCCCcCccccCCcccccccchhccceeccccccccccccccccccccccccccccccccCcccccceeecc
Confidence 7999999998 48999999999999999999999999999998 7889999999999998 5789999999999999998
Q ss_pred cCCCCCCCCcCCCCCC-CcccccccccceeeeceeEeCCCCcHHHHHHHHh-cCCeEEEEEeccccccccCCceEeCC-C
Q 019112 208 NKGLATEADYPYQQEQ-GTCDKQKEKAAAATIGKYEDLPKGDEHALLQAVT-KQPVSVCVEASGQAFRFYKRGVLNAE-C 284 (346)
Q Consensus 208 ~~Gi~~e~~yPY~~~~-~~c~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Gi~~~~-~ 284 (346)
+.|+++|++|||.... ..|..........++..|..+...+.++|+++|. +|||++++.+..++|..|++|||..+ |
T Consensus 81 ~~Gi~~e~~~pY~~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~~~~ 160 (219)
T PF00112_consen 81 NNGIVTEEDYPYNGNENPTCKSKKSNSYYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIYDPPDC 160 (219)
T ss_dssp HTSBEBTTTS--SSSSSCSSCHSGGGEEEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEECSTSS
T ss_pred cCcccccccccccccccccccccccccccccccccccccccchhHHHHHHhhCceeeeeeeccccccccccceeeecccc
Confidence 4599999999999877 6888763322357888999988777999999998 69999999999546999999999996 6
Q ss_pred C-CCCCeeEEEEEeeccccCCCccEEEEEcCCCCCcCcCceEEEEcCCC-cccccCcceeee
Q 019112 285 G-DNCDHGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRILRDEG-LCGIATEASYPV 344 (346)
Q Consensus 285 ~-~~~~Hav~iVGyg~~~~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~-~cgi~~~~~~p~ 344 (346)
. ..++|||+|||||++ .|++|||||||||++||++||+||+|+.+ +|||+++++||+
T Consensus 161 ~~~~~~Hav~iVGy~~~---~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~~~c~i~~~~~~~~ 219 (219)
T PF00112_consen 161 SNESGGHAVLIVGYDDE---NGKGYWIVKNSWGTDWGDNGYFRISYDYNNECGIESQAVYPI 219 (219)
T ss_dssp SSSSEEEEEEEEEEEEE---TTEEEEEEE-SBTTTSTBTTEEEEESSSSSGGGTTSSEEEEE
T ss_pred ccccccccccccccccc---cceeeEeeehhhCCccCCCeEEEEeeCCCCcCccCceeeecC
Confidence 5 478999999999998 68999999999999999999999999976 999999999996
No 11
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=4.8e-55 Score=432.68 Aligned_cols=215 Identities=28% Similarity=0.576 Sum_probs=179.6
Q ss_pred CCCCCCceecccc----CCcccccCCCCCccHHHHHHHHHHHHHHHHhcCC-----C-----cccCHHHHhhcCCCCCCC
Q 019112 128 VTDVPTSIDWREK----GAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGK-----L-----IELSEQQLVDCSTDNNGC 193 (346)
Q Consensus 128 ~~~lP~~~Dwr~~----g~v~pVkdQg~cGsCwAfA~~~~le~~~~~~~~~-----~-----~~lS~q~l~~c~~~~~gc 193 (346)
..+||++||||+. +.++||+|||.||||||||+++++|++++|++++ . ..||+|+|+||+..++||
T Consensus 378 ~~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~~nqGC 457 (693)
T PTZ00049 378 IDELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSFYDQGC 457 (693)
T ss_pred cccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCCCCCCc
Confidence 4589999999984 6799999999999999999999999999998642 1 279999999999888999
Q ss_pred CCCchHHHHHHHHHcCCCCCCCCcCCCCCCCcccccccc--------------------------------------cce
Q 019112 194 SGGLMDKAFEYIIENKGLATEADYPYQQEQGTCDKQKEK--------------------------------------AAA 235 (346)
Q Consensus 194 ~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~c~~~~~~--------------------------------------~~~ 235 (346)
+||.+..|++|+.+. ||++|++|||.+..+.|...... ..+
T Consensus 458 ~GG~~~~A~kya~~~-GI~tEscYPY~a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 536 (693)
T PTZ00049 458 NGGFPYLVSKMAKLQ-GIPLDKVFPYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPAR 536 (693)
T ss_pred CCCcHHHHHHHHHHC-CCCcCCccCCcCCCCCCCCCCCCccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999875 99999999999887888542110 112
Q ss_pred eeeceeEeCC-------CCcHHHHHHHHh-cCCeEEEEEeccccccccCCceEeCC-------CCC--------------
Q 019112 236 ATIGKYEDLP-------KGDEHALLQAVT-KQPVSVCVEASGQAFRFYKRGVLNAE-------CGD-------------- 286 (346)
Q Consensus 236 ~~i~~y~~v~-------~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Gi~~~~-------~~~-------------- 286 (346)
..++.|..+. ..+++.|+++|. +|||+|+|++. ++|++|++|||+.+ |..
T Consensus 537 ~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~-~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G~ 615 (693)
T PTZ00049 537 WYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEAS-PDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITGW 615 (693)
T ss_pred eeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEec-hhhhcCCCccccCcccccccccCCcccccccccccccc
Confidence 2345555553 146888999997 79999999997 68999999999852 531
Q ss_pred -CCCeeEEEEEeeccccCCC--ccEEEEEcCCCCCcCcCceEEEEcCCCcccccCcceeeee
Q 019112 287 -NCDHGVAVVGFGTAEEEDG--AKYWLIKNSWGETWGESGYIRILRDEGLCGIATEASYPVA 345 (346)
Q Consensus 287 -~~~Hav~iVGyg~~~~~~g--~~ywivkNSWG~~WGe~Gy~~i~~~~~~cgi~~~~~~p~~ 345 (346)
.++|||+|||||.+. .+| .+|||||||||++||++|||||+||.|.|||+++++|+..
T Consensus 616 e~~NHAVlIVGwG~d~-enG~~~~YWIVRNSWGt~WGenGYfKI~RG~N~CGIEs~a~~~~p 676 (693)
T PTZ00049 616 EKVNHAIVLVGWGEEE-INGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIESQSLFIEP 676 (693)
T ss_pred ccCceEEEEEEecccc-CCCcccCEEEEECCCCCCcccCceEEEEcCCCccCCccceeEEee
Confidence 369999999999752 245 3799999999999999999999999999999999999763
No 12
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=1.1e-54 Score=426.13 Aligned_cols=207 Identities=24% Similarity=0.521 Sum_probs=176.1
Q ss_pred CCCCCceeccccC---CcccccCCCC---CccHHHHHHHHHHHHHHHHhcC------CCcccCHHHHhhcCCCCCCCCCC
Q 019112 129 TDVPTSIDWREKG---AVTHIKNQGH---CGSCWAFSAVAAVEGITQITGG------KLIELSEQQLVDCSTDNNGCSGG 196 (346)
Q Consensus 129 ~~lP~~~Dwr~~g---~v~pVkdQg~---cGsCwAfA~~~~le~~~~~~~~------~~~~lS~q~l~~c~~~~~gc~GG 196 (346)
.+||++||||+.| +++||||||. ||||||||+++++|++++++++ ..+.||+|+|+||+..++||+||
T Consensus 203 ~~LP~sfDWR~~gg~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~~n~GCdGG 282 (548)
T PTZ00364 203 DPPPAAWSWGDVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQYGQGCAGG 282 (548)
T ss_pred cCCCCccccCcCCCCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccCCCCCCCCC
Confidence 5799999999987 7999999999 9999999999999999999873 46789999999999878999999
Q ss_pred chHHHHHHHHHcCCCCCCCCc--CCCCCCC---cccccccccceee------eceeEeCCCCcHHHHHHHHh-cCCeEEE
Q 019112 197 LMDKAFEYIIENKGLATEADY--PYQQEQG---TCDKQKEKAAAAT------IGKYEDLPKGDEHALLQAVT-KQPVSVC 264 (346)
Q Consensus 197 ~~~~a~~~~~~~~Gi~~e~~y--PY~~~~~---~c~~~~~~~~~~~------i~~y~~v~~~~~~~i~~~l~-~gPV~v~ 264 (346)
++..|++|+.++ |+++|++| ||.+.++ .|.... ....+. +.+|..+. .++++|+.+|. +|||+|+
T Consensus 283 ~p~~A~~yi~~~-GI~tE~dY~~PY~~~dg~~~~Ck~~~-~~~~y~~~~~~~I~gyy~~~-~~e~~I~~eI~~~GPVsVa 359 (548)
T PTZ00364 283 FPEEVGKFAETF-GILTTDSYYIPYDSGDGVERACKTRR-PSRRYYFTNYGPLGGYYGAV-TDPDEIIWEIYRHGPVPAS 359 (548)
T ss_pred cHHHHHHHHHhC-CcccccccCCCCCCCCCCCCCCCCCc-ccceeeeeeeEEecceeecC-CcHHHHHHHHHHcCCeEEE
Confidence 999999999875 99999999 9987655 486542 223333 33444444 46788999997 7999999
Q ss_pred EEeccccccccCCceEeCC---------C-----------CCCCCeeEEEEEeeccccCCCccEEEEEcCCCC--CcCcC
Q 019112 265 VEASGQAFRFYKRGVLNAE---------C-----------GDNCDHGVAVVGFGTAEEEDGAKYWLIKNSWGE--TWGES 322 (346)
Q Consensus 265 ~~~~~~~f~~y~~Gi~~~~---------~-----------~~~~~Hav~iVGyg~~~~~~g~~ywivkNSWG~--~WGe~ 322 (346)
|++. .+|..|++|||... | ...++|||+|||||.+ ++|.+|||||||||+ +|||+
T Consensus 360 Ida~-~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~d--e~G~~YWIVKNSWGt~~~WGE~ 436 (548)
T PTZ00364 360 VYAN-SDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTD--ENGGDYWLVLDPWGSRRSWCDG 436 (548)
T ss_pred EEec-hHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEeccc--CCCceEEEEECCCCCCCCcccC
Confidence 9998 68999999998621 1 1357999999999975 268899999999999 99999
Q ss_pred ceEEEEcCCCcccccCcce
Q 019112 323 GYIRILRDEGLCGIATEAS 341 (346)
Q Consensus 323 Gy~~i~~~~~~cgi~~~~~ 341 (346)
|||||+||.|+|||++.++
T Consensus 437 GYfRI~RG~N~CGIes~~v 455 (548)
T PTZ00364 437 GTRKIARGVNAYNIESEVV 455 (548)
T ss_pred CeEEEEcCCCcccccceee
Confidence 9999999999999999887
No 13
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=1.8e-50 Score=348.68 Aligned_cols=166 Identities=60% Similarity=1.147 Sum_probs=149.1
Q ss_pred CCCceeccccCCcccccCCCCCccHHHHHHHHHHHHHHHHhcCCCcccCHHHHhhcCCC-CCCCCCCchHHHHHHHHHcC
Q 019112 131 VPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD-NNGCSGGLMDKAFEYIIENK 209 (346)
Q Consensus 131 lP~~~Dwr~~g~v~pVkdQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~~c~~~-~~gc~GG~~~~a~~~~~~~~ 209 (346)
||++||||+.++++||+||+.||+|||||+++++|+++++++++.++||+|+|++|... +.+|+||++..|++|+.++.
T Consensus 1 lP~~~D~R~~~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~~~~gC~GG~~~~a~~~~~~~~ 80 (174)
T smart00645 1 LPESFDWRKKGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTGGNNGCNGGLPDNAFEYIKKNG 80 (174)
T ss_pred CCCcCcccccCCCCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCCCCCCCCCcCHHHHHHHHHHcC
Confidence 69999999999999999999999999999999999999999998999999999999985 66999999999999998755
Q ss_pred CCCCCCCcCCCCCCCcccccccccceeeeceeEeCCCCcHHHHHHHHhcCCeEEEEEeccccccccCCceEeCC-CCC-C
Q 019112 210 GLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKGDEHALLQAVTKQPVSVCVEASGQAFRFYKRGVLNAE-CGD-N 287 (346)
Q Consensus 210 Gi~~e~~yPY~~~~~~c~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~gPV~v~~~~~~~~f~~y~~Gi~~~~-~~~-~ 287 (346)
|+++|++|||.. ++.+.+. +|++|++|||+.+ |.. .
T Consensus 81 Gi~~e~~~PY~~----------------------------------------~~~~~~~--~f~~Y~~Gi~~~~~~~~~~ 118 (174)
T smart00645 81 GLETESCYPYTG----------------------------------------SVAIDAS--DFQFYKSGIYDHPGCGSGT 118 (174)
T ss_pred CcccccccCccc----------------------------------------EEEEEcc--cccCCcCeEECCCCCCCCc
Confidence 999999999965 4455554 5999999999985 764 3
Q ss_pred CCeeEEEEEeeccccCCCccEEEEEcCCCCCcCcCceEEEEcCC-CcccccCcc
Q 019112 288 CDHGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRILRDE-GLCGIATEA 340 (346)
Q Consensus 288 ~~Hav~iVGyg~~~~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~-~~cgi~~~~ 340 (346)
++|||+|||||.+ .+|.+|||||||||+.|||+|||||.|+. |.|||+...
T Consensus 119 ~~Hav~ivGyg~~--~~g~~yWii~NSwG~~WG~~G~~~i~~~~~~~c~i~~~~ 170 (174)
T smart00645 119 LDHAVLIVGYGTE--ENGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEASV 170 (174)
T ss_pred ccEEEEEEEEeec--CCCeeEEEEECCCCCCcccCeEEEEEcCCCCccCceeee
Confidence 7999999999975 36789999999999999999999999997 999996543
No 14
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=9.5e-47 Score=337.41 Aligned_cols=193 Identities=34% Similarity=0.607 Sum_probs=166.9
Q ss_pred ceeccccCCcccccCCCCCccHHHHHHHHHHHHHHHHhcC--CCcccCHHHHhhcCCCC-----CCCCCCchHHHHH-HH
Q 019112 134 SIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGG--KLIELSEQQLVDCSTDN-----NGCSGGLMDKAFE-YI 205 (346)
Q Consensus 134 ~~Dwr~~g~v~pVkdQg~cGsCwAfA~~~~le~~~~~~~~--~~~~lS~q~l~~c~~~~-----~gc~GG~~~~a~~-~~ 205 (346)
.+|||+.+ ++||+|||.||+|||||+++++|+++.++.+ +.++||+|+|++|.... .+|.||.+..++. ++
T Consensus 1 ~~d~r~~~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~~~~~ 79 (223)
T cd02619 1 SVDLRPLR-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSALLKLV 79 (223)
T ss_pred CCcchhcC-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHHHHHH
Confidence 48999988 9999999999999999999999999999987 78999999999998753 6899999999998 66
Q ss_pred HHcCCCCCCCCcCCCCCCCccccc---ccccceeeeceeEeCCCCcHHHHHHHHh-cCCeEEEEEeccccccccCCceEe
Q 019112 206 IENKGLATEADYPYQQEQGTCDKQ---KEKAAAATIGKYEDLPKGDEHALLQAVT-KQPVSVCVEASGQAFRFYKRGVLN 281 (346)
Q Consensus 206 ~~~~Gi~~e~~yPY~~~~~~c~~~---~~~~~~~~i~~y~~v~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Gi~~ 281 (346)
.+ .|+++|++|||......|... .......++..|..+...++++||++|. .|||++++.+. ..|..|++|++.
T Consensus 80 ~~-~Gi~~e~~~Py~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~-~~~~~~~~~~~~ 157 (223)
T cd02619 80 AL-KGIPPEEDYPYGAESDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVY-SGFDRLKEGIIY 157 (223)
T ss_pred HH-cCCCccccCCCCCCCCCCCCCCccchhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEcc-cchhcccCcccc
Confidence 65 599999999999887766532 1334567889999888777899999998 69999999998 789999999873
Q ss_pred -----C-CC-CCCCCeeEEEEEeeccccCCCccEEEEEcCCCCCcCcCceEEEEcC
Q 019112 282 -----A-EC-GDNCDHGVAVVGFGTAEEEDGAKYWLIKNSWGETWGESGYIRILRD 330 (346)
Q Consensus 282 -----~-~~-~~~~~Hav~iVGyg~~~~~~g~~ywivkNSWG~~WGe~Gy~~i~~~ 330 (346)
. .+ ...++|||+|||||++.. .+++|||||||||+.||++||+||+++
T Consensus 158 ~~~~~~~~~~~~~~~Hav~ivGy~~~~~-~~~~~~i~~NSwG~~wg~~Gy~~i~~~ 212 (223)
T cd02619 158 EEIVYLLYEDGDLGGHAVVIVGYDDNYV-EGKGAFIVKNSWGTDWGDNGYGRISYE 212 (223)
T ss_pred ccccccccCCCccCCeEEEEEeecCCCC-CCCCEEEEEeCCCCccccCCEEEEehh
Confidence 2 22 346799999999998722 378999999999999999999999997
No 15
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=7.6e-46 Score=376.73 Aligned_cols=201 Identities=23% Similarity=0.499 Sum_probs=160.6
Q ss_pred cccccCCCCCccHHHHHHHHHHHHHHHHhcCCCcccCHHHHhhcCCC--CCCCCCCc-hHHHHHHHHHcCCCCCCCCcCC
Q 019112 143 VTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD--NNGCSGGL-MDKAFEYIIENKGLATEADYPY 219 (346)
Q Consensus 143 v~pVkdQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~~c~~~--~~gc~GG~-~~~a~~~~~~~~Gi~~e~~yPY 219 (346)
..||||||.||+|||||+++++|++++++++..+.||+|+|+||+.. +.||.||+ +..++.|+.+++|+++|++|||
T Consensus 544 ~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLptESdYPY 623 (1004)
T PTZ00462 544 KIQIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPADSNYLY 623 (1004)
T ss_pred CCCcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcccccCCC
Confidence 57999999999999999999999999999999999999999999864 68999997 4556688887766899999999
Q ss_pred CC--CCCccccccc-----------------ccceeeeceeEeCCCC----c----HHHHHHHHh-cCCeEEEEEecccc
Q 019112 220 QQ--EQGTCDKQKE-----------------KAAAATIGKYEDLPKG----D----EHALLQAVT-KQPVSVCVEASGQA 271 (346)
Q Consensus 220 ~~--~~~~c~~~~~-----------------~~~~~~i~~y~~v~~~----~----~~~i~~~l~-~gPV~v~~~~~~~~ 271 (346)
.. ..+.|+.... ......+.+|..+... + ++.|+++|+ +|||+|+|++. +
T Consensus 624 t~k~~~g~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~IdAs--d 701 (1004)
T PTZ00462 624 NYTKVGEDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAYIKAE--N 701 (1004)
T ss_pred ccCCCCCCCCCCcccccccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHhcCCEEEEEEee--h
Confidence 75 4567864311 0012234556555431 1 367899998 69999999986 5
Q ss_pred ccccC-CceEeCC-CCC-CCCeeEEEEEeecccc--CCCccEEEEEcCCCCCcCcCceEEEEc-CCCcccccCcceeeee
Q 019112 272 FRFYK-RGVLNAE-CGD-NCDHGVAVVGFGTAEE--EDGAKYWLIKNSWGETWGESGYIRILR-DEGLCGIATEASYPVA 345 (346)
Q Consensus 272 f~~y~-~Gi~~~~-~~~-~~~Hav~iVGyg~~~~--~~g~~ywivkNSWG~~WGe~Gy~~i~~-~~~~cgi~~~~~~p~~ 345 (346)
|+.|. +|||... |+. .++|||+|||||.+.. .+|++|||||||||+.|||+|||||.| +.+.|||.....+|++
T Consensus 702 f~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g~n~CGin~i~t~~~f 781 (1004)
T PTZ00462 702 VLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGPSHCEDNFIHSVVIF 781 (1004)
T ss_pred HHhhhcCCccccCCCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCCCCCCccchheeeeeE
Confidence 87784 8986654 874 5799999999997521 236799999999999999999999998 6999999887777653
No 16
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=100.00 E-value=2e-44 Score=321.66 Aligned_cols=265 Identities=29% Similarity=0.517 Sum_probs=205.3
Q ss_pred HHHHHHccCCCCceEEE-cccCCCCCHHHHhhhhcCCCCCCCCCCcCCCCCCccccCCCCCCCCceecccc--CCccccc
Q 019112 71 EYIEKANKEGNRTYKLG-TNEFSDLTNEEFRASYTGYNRPVPSVSRQSSRPSTFKYQNVTDVPTSIDWREK--GAVTHIK 147 (346)
Q Consensus 71 ~~I~~~N~~~~~s~~~g-~N~fsd~t~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~--g~v~pVk 147 (346)
++|+++|. ++.+|+++ ..+|..||.++-.+..+|..+|.... ..+..... ......+||+.||-|++ +++.|+-
T Consensus 151 d~iE~in~-G~YgW~A~NYSaFWGmtL~DGiKyRLGTL~Ps~sv-~nMNEi~~-~l~p~~~LPE~F~As~KWp~liH~pl 227 (470)
T KOG1544|consen 151 DMIEAINQ-GNYGWQAGNYSAFWGMTLDDGIKYRLGTLRPSSSV-MNMNEIYT-VLNPGEVLPEAFEASEKWPNLIHEPL 227 (470)
T ss_pred HHHHHHhc-CCccccccchhhhhcccccccceeeecccCchhhh-hhHHhHhh-ccCcccccchhhhhhhcCCccccCcc
Confidence 57899997 56899886 67899999999777778877665321 11110000 11223579999999987 8899999
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhcCC--CcccCHHHHhhcCCC-CCCCCCCchHHHHHHHHHcCCCCCCCCcCCCCCC-
Q 019112 148 NQGHCGSCWAFSAVAAVEGITQITGGK--LIELSEQQLVDCSTD-NNGCSGGLMDKAFEYIIENKGLATEADYPYQQEQ- 223 (346)
Q Consensus 148 dQg~cGsCwAfA~~~~le~~~~~~~~~--~~~lS~q~l~~c~~~-~~gc~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~- 223 (346)
|||+|++.|||+++++...+++|.+.. ...||+|+|++|... .+||+||..+.|+-|+.+. |+|...+|||...+
T Consensus 228 DQgnCa~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~h~q~GC~gG~lDRAWWYlRKr-GvVsdhCYP~~~dQ~ 306 (470)
T KOG1544|consen 228 DQGNCAGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDTHQQQGCRGGRLDRAWWYLRKR-GVVSDHCYPFSGDQA 306 (470)
T ss_pred ccCCcccceeeeeehhccceeEEeeccccccccChHHhcchhhhhhccCccCcccchheeeecc-cccccccccccCCCC
Confidence 999999999999999999999887643 467999999999876 7899999999999999875 99999999997532
Q ss_pred ---Cccccc------------------ccc-cceeeeceeEeCCCCcHHHHHHHHh-cCCeEEEEEeccccccccCCceE
Q 019112 224 ---GTCDKQ------------------KEK-AAAATIGKYEDLPKGDEHALLQAVT-KQPVSVCVEASGQAFRFYKRGVL 280 (346)
Q Consensus 224 ---~~c~~~------------------~~~-~~~~~i~~y~~v~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Gi~ 280 (346)
+.|... ..+ ...++.+-=+.|+ .++++|++.|+ +|||-+.+.+- ++|.+|++|||
T Consensus 307 ~~~~~C~m~sR~~grgkRqat~~CPn~~~~Sn~iyq~tPPYrVS-SnE~eImkElM~NGPVQA~m~VH-EDFF~YkgGiY 384 (470)
T KOG1544|consen 307 GPAPPCMMHSRAMGRGKRQATAHCPNSYVNSNDIYQVTPPYRVS-SNEKEIMKELMENGPVQALMEVH-EDFFLYKGGIY 384 (470)
T ss_pred CCCCCceeeccccCcccccccCcCCCcccccCceeeecCCeecc-CCHHHHHHHHHhCCChhhhhhhh-hhhhhhcccee
Confidence 234321 111 1223333333444 46778888887 99999999987 89999999999
Q ss_pred eCCCC---------CCCCeeEEEEEeeccccCCC--ccEEEEEcCCCCCcCcCceEEEEcCCCcccccCcce
Q 019112 281 NAECG---------DNCDHGVAVVGFGTAEEEDG--AKYWLIKNSWGETWGESGYIRILRDEGLCGIATEAS 341 (346)
Q Consensus 281 ~~~~~---------~~~~Hav~iVGyg~~~~~~g--~~ywivkNSWG~~WGe~Gy~~i~~~~~~cgi~~~~~ 341 (346)
.+... ..+.|+|.|.|||.+...+| .+|||..||||+.|||+|||||.||.|.|-|++..+
T Consensus 385 ~H~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGvNecdIEsfvI 456 (470)
T KOG1544|consen 385 SHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGVNECDIESFVI 456 (470)
T ss_pred eccccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEeccccchhhhHhhh
Confidence 98632 24689999999998743333 579999999999999999999999999999998653
No 17
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.2e-31 Score=243.93 Aligned_cols=198 Identities=26% Similarity=0.428 Sum_probs=136.0
Q ss_pred CCCCceeccccCCcccccCCCCCccHHHHHHHHHHHHHHHHhcCCCcccCHHHHhhcCCC--CCC-----CCCCchHHHH
Q 019112 130 DVPTSIDWREKGAVTHIKNQGHCGSCWAFSAVAAVEGITQITGGKLIELSEQQLVDCSTD--NNG-----CSGGLMDKAF 202 (346)
Q Consensus 130 ~lP~~~Dwr~~g~v~pVkdQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~~c~~~--~~g-----c~GG~~~~a~ 202 (346)
.+|+.||||+.|.|+||||||.||+|||||+++++|+.+.-.. ..++|+..+..-... .++ -+||....+.
T Consensus 98 s~~~~fd~r~~g~vs~v~dQg~~Gscwaf~t~~sles~l~~~~--~w~~s~~nm~~ll~~~ye~~fd~~~~d~g~~~m~~ 175 (372)
T COG4870 98 SLPSYFDRRDEGKVSPVKDQGSGGSCWAFATTRSLESYLNPES--AWDFSENNMKNLLGVPYEKGFDYTSNDGGNADMSA 175 (372)
T ss_pred cchhheeeeccCCcccccccCcccceEeeeehhhhhheecccc--cccccccchhhhcCCCccccCCCccccCCcccccc
Confidence 5899999999999999999999999999999999999865433 445565544432111 122 2378888888
Q ss_pred HHHHHcCCCCCCCCcCCCCCCCcccccccccceeeeceeEeCCCC----cHHHHHHHHh-cCCeEEEEEeccccccccCC
Q 019112 203 EYIIENKGLATEADYPYQQEQGTCDKQKEKAAAATIGKYEDLPKG----DEHALLQAVT-KQPVSVCVEASGQAFRFYKR 277 (346)
Q Consensus 203 ~~~~~~~Gi~~e~~yPY~~~~~~c~~~~~~~~~~~i~~y~~v~~~----~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~ 277 (346)
.|+.++.|.+.|.+-||......|....+. ..++..-..++.. +...|++++. .|-+...|.+....+....-
T Consensus 176 a~l~e~sgpv~et~d~y~~~s~~~~~~~p~--~k~~~~~~~i~~~~~~LdnG~i~~~~~~yg~~s~~~~id~~~~~~~~~ 253 (372)
T COG4870 176 AYLTEWSGPVYETDDPYSENSYFSPTNLPV--TKHVQEAQIIPSRKKYLDNGNIKAMFGFYGAVSSSMYIDATNSLGICI 253 (372)
T ss_pred ccccccCCcchhhcCccccccccCCcCCch--hhccccceecccchhhhcccchHHHHhhhccccceeEEeccccccccc
Confidence 889999999999999999877777653211 1222222223211 2233666665 56665333332112322233
Q ss_pred ceEeCCCCCCCCeeEEEEEeecccc-------CCCccEEEEEcCCCCCcCcCceEEEEcCC
Q 019112 278 GVLNAECGDNCDHGVAVVGFGTAEE-------EDGAKYWLIKNSWGETWGESGYIRILRDE 331 (346)
Q Consensus 278 Gi~~~~~~~~~~Hav~iVGyg~~~~-------~~g~~ywivkNSWG~~WGe~Gy~~i~~~~ 331 (346)
+.+........+|||+||||+|... ..|.+.||||||||++||++|||||++..
T Consensus 254 ~~~~~~s~~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~y 314 (372)
T COG4870 254 PYPYVDSGENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYY 314 (372)
T ss_pred CCCCCCccccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEeee
Confidence 4444433467899999999999742 23567899999999999999999999983
No 18
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.91 E-value=4.3e-24 Score=206.04 Aligned_cols=179 Identities=25% Similarity=0.400 Sum_probs=128.4
Q ss_pred ccccCCCCCccHHHHHHHHHHHHHHHHh-cCCCcccCHHHHhhcCC----------------------------CCCCCC
Q 019112 144 THIKNQGHCGSCWAFSAVAAVEGITQIT-GGKLIELSEQQLVDCST----------------------------DNNGCS 194 (346)
Q Consensus 144 ~pVkdQg~cGsCwAfA~~~~le~~~~~~-~~~~~~lS~q~l~~c~~----------------------------~~~gc~ 194 (346)
.||+||+.-|.||.||+...+++.+.++ +.+.++||+.++...++ .....+
T Consensus 55 ~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~D 134 (437)
T cd00585 55 EPVTNQKSSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQND 134 (437)
T ss_pred CCcccCCCCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcCC
Confidence 4899999999999999999999987764 55689999988875221 134578
Q ss_pred CCchHHHHHHHHHcCCCCCCCCcCCCCCC---------------------------Cc----------------------
Q 019112 195 GGLMDKAFEYIIENKGLATEADYPYQQEQ---------------------------GT---------------------- 225 (346)
Q Consensus 195 GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~---------------------------~~---------------------- 225 (346)
||....+...+.+ +|+++++.||-+... +.
T Consensus 135 GGqw~m~~~li~K-YGvVPk~~~pet~~s~~t~~~n~~L~~kLr~~a~~lr~~~~~~~~~~~l~~~~~~~~~~iy~il~~ 213 (437)
T cd00585 135 GGQWDMLVNLIEK-YGLVPKSVMPESFNSENSRRLNYLLNRKLREDALELRKLVAKGASKEEIEAKKEEMLKEVYRILAI 213 (437)
T ss_pred CCchHHHHHHHHH-cCCCcccccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998876 599999999954210 00
Q ss_pred ----cccc-------------------c---------------------cc--c---ceee-----------eceeEeCC
Q 019112 226 ----CDKQ-------------------K---------------------EK--A---AAAT-----------IGKYEDLP 245 (346)
Q Consensus 226 ----c~~~-------------------~---------------------~~--~---~~~~-----------i~~y~~v~ 245 (346)
++.. + +. . ..+. ...|.+++
T Consensus 214 ~lG~pP~~F~~~y~dkd~~~~~~~~~TP~~F~~~yv~~~~~dyV~l~~~p~~~~p~~~~y~ve~~~Nv~~g~~~~y~Nvp 293 (437)
T cd00585 214 ALGEPPEKFDWEYRDKDKKYHEIKELTPLEFYKKYVKFDLDDYVSLINDPRPDKPYNKLYTVEYLGNVVGGRPILYLNVP 293 (437)
T ss_pred HcCCCCceEEEEEEeCCCCeeeCCCcCHHHHHHHhcCCCccceEEEEeCCCCCCCCCceEEEecCCcccccccceEEecC
Confidence 0000 0 00 0 0000 00122222
Q ss_pred CCcHHHHH----HHHh-cCCeEEEEEeccccccccCCceEeCC----------------------CCCCCCeeEEEEEee
Q 019112 246 KGDEHALL----QAVT-KQPVSVCVEASGQAFRFYKRGVLNAE----------------------CGDNCDHGVAVVGFG 298 (346)
Q Consensus 246 ~~~~~~i~----~~l~-~gPV~v~~~~~~~~f~~y~~Gi~~~~----------------------~~~~~~Hav~iVGyg 298 (346)
.+.++ ++|. .+||.++.++. .|..|++||++.. |.+..+|||+|||||
T Consensus 294 ---~d~l~~~~~~~L~~g~pV~~g~Dv~--~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~ 368 (437)
T cd00585 294 ---MDVLKKAAIAQLKDGEPVWFGCDVG--KFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVD 368 (437)
T ss_pred ---HHHHHHHHHHHHhcCCCEEEEEEcC--hhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEE
Confidence 34444 4555 68999999997 4678999999653 224468999999999
Q ss_pred ccccCCCc-cEEEEEcCCCCCcCcCceEEEEcC
Q 019112 299 TAEEEDGA-KYWLIKNSWGETWGESGYIRILRD 330 (346)
Q Consensus 299 ~~~~~~g~-~ywivkNSWG~~WGe~Gy~~i~~~ 330 (346)
.+ .+|+ .||+||||||+.||++||++|+++
T Consensus 369 ~D--~~g~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 369 LD--EDGKPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred ec--CCCCcceEEEEcccCCCCCCCcceehhHH
Confidence 86 2465 699999999999999999999986
No 19
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=99.72 E-value=1.7e-17 Score=116.66 Aligned_cols=58 Identities=53% Similarity=0.837 Sum_probs=51.8
Q ss_pred HHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHccCCCCceEEEcccCCCCCHHHH
Q 019112 42 HEQWMAQHGRTYKDELEKAMRLTIFKQNLEYIEKANKEGNRTYKLGTNEFSDLTNEEF 99 (346)
Q Consensus 42 f~~~~~~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~~~s~~~g~N~fsd~t~~E~ 99 (346)
|++|+++|+|.|.+.+|+..|+.+|.+|++.|++||+.++.+|++|+|+|||||.+||
T Consensus 1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N~fsD~t~eEf 58 (58)
T PF08246_consen 1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLNQFSDMTPEEF 58 (58)
T ss_dssp HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SSTTTTSSHHHH
T ss_pred CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCccccCcChhhC
Confidence 8999999999999999999999999999999999997677999999999999999997
No 20
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=99.70 E-value=1.2e-16 Score=154.54 Aligned_cols=179 Identities=23% Similarity=0.403 Sum_probs=106.0
Q ss_pred ccccCCCCCccHHHHHHHHHHHHHHHHhcC-CCcccCHHHHhh----------------cCCC------------CCCCC
Q 019112 144 THIKNQGHCGSCWAFSAVAAVEGITQITGG-KLIELSEQQLVD----------------CSTD------------NNGCS 194 (346)
Q Consensus 144 ~pVkdQg~cGsCwAfA~~~~le~~~~~~~~-~~~~lS~q~l~~----------------c~~~------------~~gc~ 194 (346)
.||.||..-|.||.||+...++..+.++.+ +.++||+.++.. +... ....+
T Consensus 56 ~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~D 135 (438)
T PF03051_consen 56 GPVTNQKSSGRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVSD 135 (438)
T ss_dssp -S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-S
T ss_pred CCCCCCCCCCCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCCC
Confidence 499999999999999999999999887765 778999998762 2210 34578
Q ss_pred CCchHHHHHHHHHcCCCCCCCCcCCCCC---------------------------CC-----------------------
Q 019112 195 GGLMDKAFEYIIENKGLATEADYPYQQE---------------------------QG----------------------- 224 (346)
Q Consensus 195 GG~~~~a~~~~~~~~Gi~~e~~yPY~~~---------------------------~~----------------------- 224 (346)
||....+.+-+.+ +|+|+.+.||-+.. .+
T Consensus 136 GGqw~~~~nli~K-YGvVPk~~mpet~~s~~t~~~n~~l~~~Lr~~a~~LR~~~~~~~~~~~l~~~k~~~l~~iy~il~~ 214 (438)
T PF03051_consen 136 GGQWDMVVNLIKK-YGVVPKSVMPETFSSSNTSEMNEMLNTKLREYALELRKLVKAGKSEEELRKLKEEMLAEIYRILAI 214 (438)
T ss_dssp -B-HHHHHHHHHH-H---BGGGSTTGCGCHBHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHH-cCcCcHhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887776 59999999985520 00
Q ss_pred ---ccccc-------------------c---------------------c--c---cceeee-----------ceeEeCC
Q 019112 225 ---TCDKQ-------------------K---------------------E--K---AAAATI-----------GKYEDLP 245 (346)
Q Consensus 225 ---~c~~~-------------------~---------------------~--~---~~~~~i-----------~~y~~v~ 245 (346)
.++.. + + . ...+.+ ..|.+++
T Consensus 215 ~lG~PP~~F~~ey~dkd~~~~~~~~~TP~eF~~kyv~~~~ddyVsLin~P~~~~py~~~y~ve~~~Nv~~g~~~~ylNvp 294 (438)
T PF03051_consen 215 YLGEPPEKFTWEYRDKDKKYHRGKNYTPLEFYKKYVGFDLDDYVSLINDPRSHHPYNKLYTVEYLGNVVGGRPVRYLNVP 294 (438)
T ss_dssp HH---SSSEEEEEE-TTS-EEEEEEE-HHHHHHHCTTS-GGGEEEEE--T-TTS-TTCEEEETTTTSSTT-EEEEEEE--
T ss_pred HcCCCChheeEEEeccccccccccccCchhHHHHHhCCCCcceEEEeeCCCccCccceeEEEccCCCEECCcceeEeccC
Confidence 00000 0 0 0 000000 0122222
Q ss_pred CCcHHHHHH----HHh-cCCeEEEEEeccccccccCCceEeCCC----------------------CCCCCeeEEEEEee
Q 019112 246 KGDEHALLQ----AVT-KQPVSVCVEASGQAFRFYKRGVLNAEC----------------------GDNCDHGVAVVGFG 298 (346)
Q Consensus 246 ~~~~~~i~~----~l~-~gPV~v~~~~~~~~f~~y~~Gi~~~~~----------------------~~~~~Hav~iVGyg 298 (346)
.+.|++ +|. .-||..+-++. .. ..-+.||.+... .+..+|||+|||.+
T Consensus 295 ---id~lk~~~i~~Lk~G~~VwfgcDV~-k~-~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~ 369 (438)
T PF03051_consen 295 ---IDELKDAAIKSLKAGYPVWFGCDVG-KF-FDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVD 369 (438)
T ss_dssp ---HHHHHHHHHHHHHTT--EEEEEETT-TT-EETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEE
T ss_pred ---HHHHHHHHHHHHHcCCcEEEeccCC-cc-ccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEE
Confidence 344444 455 56999999997 44 455788886642 02348999999999
Q ss_pred ccccCCCc-cEEEEEcCCCCCcCcCceEEEEcC
Q 019112 299 TAEEEDGA-KYWLIKNSWGETWGESGYIRILRD 330 (346)
Q Consensus 299 ~~~~~~g~-~ywivkNSWG~~WGe~Gy~~i~~~ 330 (346)
.+ .+|+ .+|+|+||||+..|.+||+.|+..
T Consensus 370 ~D--~~g~p~~wkVeNSWG~~~g~kGy~~msd~ 400 (438)
T PF03051_consen 370 LD--EDGKPVRWKVENSWGTDNGDKGYFYMSDD 400 (438)
T ss_dssp E---TTSSEEEEEEE-SBTTTSTBTTEEEEEHH
T ss_pred ec--cCCCeeEEEEEcCCCCCCCCCcEEEECHH
Confidence 86 3565 599999999999999999999854
No 21
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=99.57 E-value=4.1e-15 Score=104.06 Aligned_cols=57 Identities=49% Similarity=0.879 Sum_probs=54.0
Q ss_pred HHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHccCCCCceEEEcccCCCCCHHH
Q 019112 42 HEQWMAQHGRTYKDELEKAMRLTIFKQNLEYIEKANKEGNRTYKLGTNEFSDLTNEE 98 (346)
Q Consensus 42 f~~~~~~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~~~s~~~g~N~fsd~t~~E 98 (346)
|++|+.+|+|.|.+.+|...|+.+|.+|++.|+.||+.++.+|++|+|+|+|||++|
T Consensus 1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N~fsDlt~eE 57 (57)
T smart00848 1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKKNDHSYTLGLNQFADLTNEE 57 (57)
T ss_pred ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCcccccCCCCC
Confidence 688999999999999999999999999999999999877789999999999999886
No 22
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=98.96 E-value=3e-09 Score=97.17 Aligned_cols=75 Identities=21% Similarity=0.309 Sum_probs=54.6
Q ss_pred cccCCCCCccHHHHHHHHHHHHHHHHhcC-CCcccCHHHHhhcCC----------------------------CCCCCCC
Q 019112 145 HIKNQGHCGSCWAFSAVAAVEGITQITGG-KLIELSEQQLVDCST----------------------------DNNGCSG 195 (346)
Q Consensus 145 pVkdQg~cGsCwAfA~~~~le~~~~~~~~-~~~~lS~q~l~~c~~----------------------------~~~gc~G 195 (346)
||.||...|-||-||+..++...+...-+ +.+.||..++...++ ....-+|
T Consensus 59 ~vtNQk~SGRCWmFAAlNtfRhk~~~el~le~fElSQaytfFwDKlEKaN~FleqIi~tadq~ldsRlv~~LL~~PqqDG 138 (444)
T COG3579 59 KVTNQKQSGRCWMFAALNTFRHKLISELKLEDFELSQAYTFFWDKLEKANWFLEQIIETADQELDSRLVSFLLATPQQDG 138 (444)
T ss_pred ccccccccceehHHHHHHHHHHHHHHhcCcceeehhhHHHHHHHHHHHhhHHHHHHHhhcccchHHHHHHHHHcCccccC
Confidence 89999999999999999987655443332 456788776654332 1234578
Q ss_pred CchHHHHHHHHHcCCCCCCCCcCCC
Q 019112 196 GLMDKAFEYIIENKGLATEADYPYQ 220 (346)
Q Consensus 196 G~~~~a~~~~~~~~Gi~~e~~yPY~ 220 (346)
|-.......+.+ +|+++.++||-+
T Consensus 139 GQwdM~v~l~eK-YGvVpK~~ypes 162 (444)
T COG3579 139 GQWDMFVSLFEK-YGVVPKSVYPES 162 (444)
T ss_pred chHHHHHHHHHH-hCCCchhhcccc
Confidence 888877776665 699999999855
No 23
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=97.98 E-value=6.5e-06 Score=75.47 Aligned_cols=76 Identities=20% Similarity=0.239 Sum_probs=56.2
Q ss_pred ccccCCCCCccHHHHHHHHHHHHHHHHhcC-CCcccCHHHHhhcC--------------------CC----------CCC
Q 019112 144 THIKNQGHCGSCWAFSAVAAVEGITQITGG-KLIELSEQQLVDCS--------------------TD----------NNG 192 (346)
Q Consensus 144 ~pVkdQg~cGsCwAfA~~~~le~~~~~~~~-~~~~lS~q~l~~c~--------------------~~----------~~g 192 (346)
+||.||.+-|-||.|+.+..+---+.++-+ ..+.||..+|+..+ .. +..
T Consensus 63 ~pvtnqkssGrcWift~ln~lrl~~~~kLnl~eFElSqayLFFwdKlErcnyFL~~vvd~a~r~ep~DgRlvq~Ll~nP~ 142 (457)
T KOG4128|consen 63 QPVTNQKSSGRCWIFTGLNLLRLEMDRKLNLPEFELSQAYLFFWDKLERCNYFLWTVVDLAMRCEPLDGRLVQNLLKNPV 142 (457)
T ss_pred cccccCcCCCceEEEechhHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHhCCC
Confidence 699999999999999999987654444332 45778988776322 11 344
Q ss_pred CCCCchHHHHHHHHHcCCCCCCCCcCCC
Q 019112 193 CSGGLMDKAFEYIIENKGLATEADYPYQ 220 (346)
Q Consensus 193 c~GG~~~~a~~~~~~~~Gi~~e~~yPY~ 220 (346)
-+||.....++.+.+ +|+.+..|||-.
T Consensus 143 ~DGGqw~MfvNlVkK-YGviPKkcy~~s 169 (457)
T KOG4128|consen 143 PDGGQWQMFVNLVKK-YGVIPKKCYLHS 169 (457)
T ss_pred CCCchHHHHHHHHHH-hCCCcHHhcccc
Confidence 579998888887766 599999999743
No 24
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=96.85 E-value=0.0011 Score=42.47 Aligned_cols=36 Identities=31% Similarity=0.418 Sum_probs=23.1
Q ss_pred HHHHHHHccCCCCceEEEcccCCCCCHHHHhhhhcCCCC
Q 019112 70 LEYIEKANKEGNRTYKLGTNEFSDLTNEEFRASYTGYNR 108 (346)
Q Consensus 70 ~~~I~~~N~~~~~s~~~g~N~fsd~t~~E~~~~~~~~~~ 108 (346)
-++|+.+|+. +.+|++|.| |.+.+.++++.+ +|..+
T Consensus 3 de~I~~IN~~-~~tWkAG~N-F~~~~~~~ik~L-lGv~~ 38 (41)
T PF08127_consen 3 DEFIDYINSK-NTTWKAGRN-FENTSIEYIKRL-LGVLP 38 (41)
T ss_dssp HHHHHHHHHC-T-SEEE-----SSB-HHHHHHC-S-B-T
T ss_pred HHHHHHHHcC-CCcccCCCC-CCCCCHHHHHHH-cCCCC
Confidence 3689999998 699999999 899999998865 56654
No 25
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=96.77 E-value=0.014 Score=49.43 Aligned_cols=120 Identities=20% Similarity=0.320 Sum_probs=67.9
Q ss_pred CCCCCccHHHHHHHHHHHHHHHH--------hcCCCcccCHHHHhhcCCCCCCCCCCchHHHHHHHHHcCCCCCCCCcCC
Q 019112 148 NQGHCGSCWAFSAVAAVEGITQI--------TGGKLIELSEQQLVDCSTDNNGCSGGLMDKAFEYIIENKGLATEADYPY 219 (346)
Q Consensus 148 dQg~cGsCwAfA~~~~le~~~~~--------~~~~~~~lS~q~l~~c~~~~~gc~GG~~~~a~~~~~~~~Gi~~e~~yPY 219 (346)
.||.-+-|-+||.++.|-..... ...-.+.+|+++|.+++. .+...++|.... |...
T Consensus 18 tQg~~pWCa~Ya~aailN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~~~--------~~~~~i~y~ks~-g~~~------ 82 (175)
T PF05543_consen 18 TQGYNPWCAGYAMAAILNATTNTKIYNAKDIMRYLYPNVSEEQLKFTSL--------TPNQMIKYAKSQ-GRNP------ 82 (175)
T ss_dssp --SSSS-HHHHHHHHHHHHHCT-S---HHHHHHHHSTTS-CCCHHH--B---------HHHHHHHHHHT-TEEE------
T ss_pred ccCcCcHHHHHHHHHHHHhhhCcCcCCHHHHHHHHCCCCCHHHHhhcCC--------CHHHHHHHHHHc-Ccch------
Confidence 58999999999999988654221 111235677788777643 355777776543 3211
Q ss_pred CCCCCcccccccccceeeeceeEeCCCCcHHHHHHHHh-cCCeEEEEEeccccccccCCceEeCCCCCCCCeeEEEEEee
Q 019112 220 QQEQGTCDKQKEKAAAATIGKYEDLPKGDEHALLQAVT-KQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFG 298 (346)
Q Consensus 220 ~~~~~~c~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~Hav~iVGyg 298 (346)
.+..- ..+.+++++.+. +.|+.+..+.... ..+...+||++||||-
T Consensus 83 --------------------~~~n~-~~s~~eV~~~~~~nk~i~i~~~~v~~------------~~~~~~gHAlavvGya 129 (175)
T PF05543_consen 83 --------------------QYNNR-MPSFDEVKKLIDNNKGIAILADRVEQ------------TNGPHAGHALAVVGYA 129 (175)
T ss_dssp --------------------EEECS----HHHHHHHHHTT-EEEEEEEETTS------------CTTB--EEEEEEEEEE
T ss_pred --------------------hHhcC-CCCHHHHHHHHHcCCCeEEEeccccc------------CCCCccceeEEEEeee
Confidence 11110 114678888887 6888876654311 1234578999999997
Q ss_pred ccccCCCccEEEEEcCCCC
Q 019112 299 TAEEEDGAKYWLIKNSWGE 317 (346)
Q Consensus 299 ~~~~~~g~~ywivkNSWG~ 317 (346)
.- .+|.++.++=|-|-.
T Consensus 130 ~~--~~g~~~y~~WNPW~~ 146 (175)
T PF05543_consen 130 KP--NNGQKTYYFWNPWWN 146 (175)
T ss_dssp EE--TTSEEEEEEE-TT-S
T ss_pred ec--CCCCeEEEEeCCccC
Confidence 64 367889999887743
No 26
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=96.68 E-value=0.021 Score=46.35 Aligned_cols=57 Identities=21% Similarity=0.404 Sum_probs=33.1
Q ss_pred CcHHHHHHHHh-cCCeEEEEEeccccccccCCceEeCCCCCCCCeeEEEEEeeccccCCCccEEEEEcCC
Q 019112 247 GDEHALLQAVT-KQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGAKYWLIKNSW 315 (346)
Q Consensus 247 ~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~Hav~iVGyg~~~~~~g~~ywivkNSW 315 (346)
.+.+.|++.|. ..||++.+....... ..+.+ .....+|.|+|+||+.+ + +++|-.+|
T Consensus 87 ~~~~~i~~~i~~G~Pvi~~~~~~~~~~---~~~~~---~~~~~~H~vvi~Gy~~~----~--~~~v~DP~ 144 (144)
T PF13529_consen 87 ASFDDIKQEIDAGRPVIVSVNSGWRPP---NGDGY---DGTYGGHYVVIIGYDED----G--YVYVNDPW 144 (144)
T ss_dssp S-HHHHHHHHHTT--EEEEEETTSS-----TTEEE---EE-TTEEEEEEEEE-SS----E---EEEE-TT
T ss_pred CcHHHHHHHHHCCCcEEEEEEcccccC---CCCCc---CCCcCCEEEEEEEEeCC----C--EEEEeCCC
Confidence 46788999998 569999987431111 11111 12347899999999875 2 68888887
No 27
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=88.11 E-value=1.4 Score=41.18 Aligned_cols=46 Identities=24% Similarity=0.347 Sum_probs=31.1
Q ss_pred HHHHHHHHhcC-CeEEEEEeccccccccCCceEeCCCCCCCCeeEEEEEeecc
Q 019112 249 EHALLQAVTKQ-PVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTA 300 (346)
Q Consensus 249 ~~~i~~~l~~g-PV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~Hav~iVGyg~~ 300 (346)
.+.|+++|..| ||.+.++.. +..|...-| .....+|.|+|+||+++
T Consensus 78 ~~~l~~~l~~g~pv~~~~D~~---~lpy~~~~~---~~~~~~H~i~v~G~d~~ 124 (317)
T PF14399_consen 78 WEELKEALDAGRPVIVWVDMY---YLPYRPNYY---KKHHADHYIVVYGYDEE 124 (317)
T ss_pred HHHHHHHHhCCCceEEEeccc---cCCCCcccc---ccccCCcEEEEEEEeCC
Confidence 35677788855 999998775 333433222 12346899999999975
No 28
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=79.50 E-value=28 Score=29.32 Aligned_cols=38 Identities=21% Similarity=0.298 Sum_probs=28.4
Q ss_pred cHHHHHHHHh-cCCeEEEEEeccccccccCCceEeCCCCCCCCeeEEEEEeecc
Q 019112 248 DEHALLQAVT-KQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTA 300 (346)
Q Consensus 248 ~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~Hav~iVGyg~~ 300 (346)
+.+.+...|. +||+-++..... +.-..|+++|.|-+.+
T Consensus 97 t~e~~~~LL~~yGPLwv~~~~P~---------------~~~~~H~~ViTGI~~d 135 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAWEAPG---------------DSWVAHASVITGIDGD 135 (166)
T ss_pred CHHHHHHHHHHcCCeEEEecCCC---------------CcceeeEEEEEeecCC
Confidence 4678888887 899999866542 2234799999998654
No 29
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=77.46 E-value=2.3 Score=32.69 Aligned_cols=17 Identities=18% Similarity=0.477 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHHHH
Q 019112 6 EKSFIIPMFVIIILVIT 22 (346)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ 22 (346)
+|.||++.|+|+++|++
T Consensus 3 SK~~llL~l~LA~lLli 19 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLI 19 (95)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 57777776665544433
No 30
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=76.49 E-value=8.6 Score=34.00 Aligned_cols=61 Identities=20% Similarity=0.355 Sum_probs=35.3
Q ss_pred cHHHHHHHHh-cCCeEEEEEeccccccccCCceEeC---CC----CCCCCeeEEEEEeeccccCCCccEEEEEc
Q 019112 248 DEHALLQAVT-KQPVSVCVEASGQAFRFYKRGVLNA---EC----GDNCDHGVAVVGFGTAEEEDGAKYWLIKN 313 (346)
Q Consensus 248 ~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Gi~~~---~~----~~~~~Hav~iVGyg~~~~~~g~~ywivkN 313 (346)
..++|...|. .||+++-++...-.=..-+.-.... .| ....+|-|+|+||+.. .+. ++++|
T Consensus 112 s~~ei~~hl~~g~~aIvLVd~~~L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~~---~~~--~~yrd 180 (212)
T PF09778_consen 112 SIQEIIEHLSSGGPAIVLVDASLLHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDAA---TKE--FEYRD 180 (212)
T ss_pred cHHHHHHHHhCCCcEEEEEccccccChhhcccccccccccccCCCCCccEEEEEEEeecCC---CCe--EEEeC
Confidence 4678888887 5677777766411100012222211 11 2456899999999976 333 66676
No 31
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.72 E-value=11 Score=32.37 Aligned_cols=53 Identities=19% Similarity=0.291 Sum_probs=37.5
Q ss_pred EeCCCCcHHHHHHHHh-cCCeEEEEEeccccccccCCceEeCCCCCCCCeeEEEEEeeccccCCCccEEEEEcCCCC
Q 019112 242 EDLPKGDEHALLQAVT-KQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGAKYWLIKNSWGE 317 (346)
Q Consensus 242 ~~v~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~Hav~iVGyg~~~~~~g~~ywivkNSWG~ 317 (346)
..++..+..+|+..|. ..||.+-... |.. ..-|+|+|+||++. ++..-++||-
T Consensus 116 ~d~tGksl~~ik~ql~kg~PV~iw~T~----~~~------------~s~H~v~itgyDk~-------n~yynDpyG~ 169 (195)
T COG4990 116 VDLTGKSLSDIKGQLLKGRPVVIWVTN----FHS------------YSIHSVLITGYDKY-------NIYYNDPYGY 169 (195)
T ss_pred ccCcCCcHHHHHHHHhcCCcEEEEEec----ccc------------cceeeeEeeccccc-------ceEecccccc
Confidence 4566678999999987 6898765543 221 24699999999865 4566677753
No 32
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=67.90 E-value=19 Score=33.84 Aligned_cols=29 Identities=24% Similarity=0.575 Sum_probs=23.2
Q ss_pred CCeeEEEEEeeccccCCCccEEEEEcCCCC
Q 019112 288 CDHGVAVVGFGTAEEEDGAKYWLIKNSWGE 317 (346)
Q Consensus 288 ~~Hav~iVGyg~~~~~~g~~ywivkNSWG~ 317 (346)
.+||-.|++...-.. .|.....+||.||.
T Consensus 235 ~~HaY~Vl~~~~~~~-~~~~lv~lrNPWg~ 263 (315)
T cd00044 235 KGHAYSVLDVREVQE-EGLRLLRLRNPWGV 263 (315)
T ss_pred cCcceEEeEEEEEcc-CceEEEEecCCccC
Confidence 489999999986511 27889999999994
No 33
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=59.13 E-value=31 Score=27.53 Aligned_cols=44 Identities=20% Similarity=0.352 Sum_probs=29.1
Q ss_pred HHHHHh-cCCeEEEEEeccccccccCCceEeCCCCCCCCeeEEEEEeeccccCCCccEEEEEcCC
Q 019112 252 LLQAVT-KQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGAKYWLIKNSW 315 (346)
Q Consensus 252 i~~~l~-~gPV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~Hav~iVGyg~~~~~~g~~ywivkNSW 315 (346)
+++.+. ..||++.++.. + .....+|.|+|+||+.+ +..+|.+.|
T Consensus 70 ~~~~l~~~~Pvi~~~~~~---~-----------~~~~~gH~vVv~g~~~~------~~~~i~DP~ 114 (141)
T cd02549 70 LLRQLAAGHPVIVSVNLG---V-----------SITPSGHAMVVIGYDRK------GNVYVNDPG 114 (141)
T ss_pred HHHHHHCCCeEEEEEecC---c-----------ccCCCCeEEEEEEEcCC------CCEEEECCC
Confidence 667776 68999887641 0 12246899999999721 125666765
No 34
>PF15240 Pro-rich: Proline-rich
Probab=58.64 E-value=6.4 Score=33.70 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhhhhccCC
Q 019112 12 PMFVIIILVITCASQVVSGR 31 (346)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~ 31 (346)
++||.+.||+++.++.++++
T Consensus 3 lVLLSvALLALSSAQ~~dEd 22 (179)
T PF15240_consen 3 LVLLSVALLALSSAQSTDED 22 (179)
T ss_pred hHHHHHHHHHhhhccccccc
Confidence 33444455555556655554
No 35
>KOG4702 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.32 E-value=81 Score=22.60 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=24.9
Q ss_pred HHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHH
Q 019112 40 EKHEQWMAQHGRTYKDELEKAMRLTIFKQNLEY 72 (346)
Q Consensus 40 ~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~n~~~ 72 (346)
..|++|...|++.-.++ |...|.+-|++-++.
T Consensus 29 e~Fee~v~~~krel~pp-e~~~~~EE~~~~lRe 60 (77)
T KOG4702|consen 29 EIFEEFVRGYKRELSPP-EATKRKEEYENFLRE 60 (77)
T ss_pred HHHHHHHHhccccCCCh-HHHhhHHHHHHHHHH
Confidence 57999999999998655 777777777766653
No 36
>PF14060 DUF4252: Domain of unknown function (DUF4252)
Probab=45.39 E-value=27 Score=28.83 Aligned_cols=34 Identities=15% Similarity=0.445 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhccCCCCCchhHHHHHHHHHHH
Q 019112 7 KSFIIPMFVIIILVITCASQVVSGRSMHEPSIVEKHEQWMAQ 48 (346)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 48 (346)
|++++++++++++++.++. ....+...|++|...
T Consensus 1 Kk~i~~l~l~~~~~~~~aq--------~~~~~~~~~~~~~~~ 34 (155)
T PF14060_consen 1 KKIILILLLLLACLASCAQ--------QGQSLQKYFDKYSEN 34 (155)
T ss_pred ChhHHHHHHHHHHHHHhcc--------cchhHHHHHHHhCCC
Confidence 6777777776766666651 123355666655433
No 37
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=44.68 E-value=62 Score=22.22 Aligned_cols=16 Identities=6% Similarity=0.397 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhh
Q 019112 10 IIPMFVIIILVITCAS 25 (346)
Q Consensus 10 ~~~~~~~~~~~~~~~~ 25 (346)
+++||++.|+++++.+
T Consensus 24 lmTLLl~fFVlL~s~s 39 (58)
T PF13677_consen 24 LMTLLLAFFVLLFSMS 39 (58)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555665666665443
No 38
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=43.78 E-value=15 Score=25.82 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q 019112 8 SFIIPMFVIIILVITCASQVV 28 (346)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~ 28 (346)
++.+..|+.|++|.++|||.-
T Consensus 3 n~Si~VLlaLvLIg~fAVqSd 23 (71)
T PF04202_consen 3 NLSIAVLLALVLIGSFAVQSD 23 (71)
T ss_pred chhHHHHHHHHHHhhheeeec
Confidence 445555666677777788643
No 39
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=43.61 E-value=1.1e+02 Score=26.36 Aligned_cols=49 Identities=24% Similarity=0.649 Sum_probs=29.5
Q ss_pred HHHHHHHh-cCCeEEEEEeccccccccCCceEeCCCCCCCCeeEEEEEeeccccCCCccEEEEEcCCCCCcC--cCceEE
Q 019112 250 HALLQAVT-KQPVSVCVEASGQAFRFYKRGVLNAECGDNCDHGVAVVGFGTAEEEDGAKYWLIKNSWGETWG--ESGYIR 326 (346)
Q Consensus 250 ~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~Hav~iVGyg~~~~~~g~~ywivkNSWG~~WG--e~Gy~~ 326 (346)
+.|+..|. ..||.+.-... ..+||.+|=||..+ .||-+ -|| || .+||++
T Consensus 141 ~~i~~el~~~rPV~~~g~~~------------------~~GHawViDGy~~~------~~~H~--NwG--W~G~~nGyy~ 192 (192)
T PF01640_consen 141 DMIRNELDNGRPVLYSGNSK------------------SGGHAWVIDGYDSD------GYFHC--NWG--WGGSSNGYYR 192 (192)
T ss_dssp HHHHHHHHTT--EEEEEEET------------------TEEEEEEEEEEESS------SEEEE--E-S--STTTT-EEEE
T ss_pred HHHHHHHHcCCCEEEEEecC------------------CCCeEEEEcCccCC------CeEEE--eeC--ccCCCCCccC
Confidence 45677776 68998654332 11899999999543 46665 355 54 568875
No 40
>PF03058 Sar8_2: Sar8.2 family; InterPro: IPR004297 Members of this family are found in Solanaceae spp. plants, a taxonomic group (family) that includes pepper and tobacco plant species. Synthesis of these proteins is induced by Tobacco mosaic virus and salicylic acid []; indeed they are thought to be involved in the development of systemic acquired resistance (SAR) after an initial hypersensitive response to microbial infection [, ]. SAR is characterised by long-lasting resistance to infection by a wide range of pathogens, extending to plant tissues distant from the initial infection site [].
Probab=41.66 E-value=56 Score=24.65 Aligned_cols=6 Identities=50% Similarity=0.418 Sum_probs=3.2
Q ss_pred Cccchh
Q 019112 1 MVLKFE 6 (346)
Q Consensus 1 ~~~~~~ 6 (346)
|++|-|
T Consensus 1 M~~Ktn 6 (93)
T PF03058_consen 1 MVSKTN 6 (93)
T ss_pred Ccchhh
Confidence 555544
No 41
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=40.34 E-value=27 Score=19.75 Aligned_cols=20 Identities=20% Similarity=0.705 Sum_probs=11.6
Q ss_pred cchhhHHHHHHHHHHHHHHHH
Q 019112 3 LKFEKSFIIPMFVIIILVITC 23 (346)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ 23 (346)
+++-|+++.+++++ +.+.-|
T Consensus 4 ~~mmKkil~~l~a~-~~LagC 23 (25)
T PF08139_consen 4 LSMMKKILFPLLAL-FMLAGC 23 (25)
T ss_pred HHHHHHHHHHHHHH-HHHhhc
Confidence 45667877766663 334444
No 42
>PF15284 PAGK: Phage-encoded virulence factor
Probab=39.36 E-value=33 Score=23.81 Aligned_cols=26 Identities=23% Similarity=0.181 Sum_probs=15.5
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhcc
Q 019112 4 KFEKSFIIPMFVIIILVITCASQVVS 29 (346)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (346)
|-.|+++++|+++|.-..+++.....
T Consensus 2 kk~ksifL~l~~~LsA~~FSasamAa 27 (61)
T PF15284_consen 2 KKFKSIFLALVFILSAAGFSASAMAA 27 (61)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 33466666666666666666655543
No 43
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=32.27 E-value=1.6e+02 Score=20.76 Aligned_cols=17 Identities=18% Similarity=0.303 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHhh
Q 019112 9 FIIPMFVIIILVITCAS 25 (346)
Q Consensus 9 ~~~~~~~~~~~~~~~~~ 25 (346)
++.++|.++++++++..
T Consensus 4 iiSIvLai~lLI~l~~n 20 (66)
T PF07438_consen 4 IISIVLAIALLISLSVN 20 (66)
T ss_pred hHHHHHHHHHHHHHhhh
Confidence 34555555555555443
No 44
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=30.48 E-value=84 Score=29.61 Aligned_cols=27 Identities=22% Similarity=0.560 Sum_probs=21.1
Q ss_pred CCeeEEEEEeeccccCCCcc--EEEEEcCCCC
Q 019112 288 CDHGVAVVGFGTAEEEDGAK--YWLIKNSWGE 317 (346)
Q Consensus 288 ~~Hav~iVGyg~~~~~~g~~--ywivkNSWG~ 317 (346)
.+||=.|++...- ++.+ -..+||-||.
T Consensus 227 ~~HaYsVl~v~~~---~~~~~~Ll~lrNPWg~ 255 (318)
T smart00230 227 KGHAYSVTDVREV---QGRRQELLRLRNPWGQ 255 (318)
T ss_pred cCccEEEEEEEEE---ecCCeEEEEEECCCCC
Confidence 4899999998764 3444 8999999983
No 45
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=29.93 E-value=92 Score=23.28 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 019112 56 ELEKAMRLTIFKQNLE 71 (346)
Q Consensus 56 ~~E~~~R~~iF~~n~~ 71 (346)
..|..+|.+.|.+|+.
T Consensus 67 ~~~~~~~~~~~l~Nld 82 (84)
T PF06143_consen 67 RAERQQREKTYLANLD 82 (84)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4466677777777764
No 46
>CHL00038 psbL photosystem II protein L
Probab=27.49 E-value=94 Score=19.26 Aligned_cols=20 Identities=5% Similarity=0.202 Sum_probs=14.9
Q ss_pred chhhHHHHHHHHHHHHHHHH
Q 019112 4 KFEKSFIIPMFVIIILVITC 23 (346)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (346)
.+|+-.+...++++++++..
T Consensus 12 ELNRTSLy~GLLlifvl~vl 31 (38)
T CHL00038 12 ELNRTSLYWGLLLIFVLAVL 31 (38)
T ss_pred chhhhhHHHHHHHHHHHHHH
Confidence 47888888888888766553
No 47
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=27.07 E-value=2.4e+02 Score=23.63 Aligned_cols=20 Identities=20% Similarity=0.677 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHHHhh
Q 019112 6 EKSFIIPMFVIIILVITCAS 25 (346)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~ 25 (346)
+|+++=+||++++++..|.+
T Consensus 3 nkni~klff~~~lfvmaCka 22 (160)
T PF03978_consen 3 NKNIVKLFFISMLFVMACKA 22 (160)
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 56777777777776666543
No 48
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=26.66 E-value=1.7e+02 Score=21.53 Aligned_cols=13 Identities=0% Similarity=0.087 Sum_probs=6.2
Q ss_pred hhHHHHHHHHHHH
Q 019112 36 PSIVEKHEQWMAQ 48 (346)
Q Consensus 36 ~~~~~~f~~~~~~ 48 (346)
....+.-+++.++
T Consensus 34 ~~~~k~i~~yL~e 46 (85)
T PF11337_consen 34 HKAEKAIDWYLQE 46 (85)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444555544
No 49
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=25.69 E-value=81 Score=24.12 Aligned_cols=26 Identities=12% Similarity=0.092 Sum_probs=15.8
Q ss_pred CccchhhHHHHHHHHHHHHHHHHhhh
Q 019112 1 MVLKFEKSFIIPMFVIIILVITCASQ 26 (346)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (346)
|--|...-+.++|-+||+|.+-++++
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~ 26 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAAR 26 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhH
Confidence 44566666666666666666665554
No 50
>COG5510 Predicted small secreted protein [Function unknown]
Probab=24.55 E-value=1.2e+02 Score=19.66 Aligned_cols=21 Identities=14% Similarity=0.358 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhh
Q 019112 6 EKSFIIPMFVIIILVITCASQ 26 (346)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~ 26 (346)
-|.++++.++++...++.++.
T Consensus 3 k~t~l~i~~vll~s~llaaCN 23 (44)
T COG5510 3 KKTILLIALVLLASTLLAACN 23 (44)
T ss_pred hHHHHHHHHHHHHHHHHHHhh
Confidence 355666666666666666663
No 51
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=24.48 E-value=77 Score=25.83 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=13.0
Q ss_pred cchhhHHHHHHHHHHHHHHH
Q 019112 3 LKFEKSFIIPMFVIIILVIT 22 (346)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ 22 (346)
+||.+++++.+++++++++.
T Consensus 2 l~I~~KL~~~f~~~~~l~~~ 21 (181)
T PF12729_consen 2 LSIRTKLILGFGLIILLLLI 21 (181)
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 57778887777766644443
No 52
>PF11873 DUF3393: Domain of unknown function (DUF3393); InterPro: IPR024570 Membrane-bound lytic murein transglycosylase C (also known as murein hydrolase C), is a murein-degrading enzyme that may play a role in the recycling of muropeptides during cell elongation and/or cell division. This entry represents the N-terminal domain, whose function is currently not known.
Probab=23.33 E-value=86 Score=27.63 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=10.5
Q ss_pred ccccCCCCCccHHHHHHHHHH
Q 019112 144 THIKNQGHCGSCWAFSAVAAV 164 (346)
Q Consensus 144 ~pVkdQg~cGsCwAfA~~~~l 164 (346)
..|.||-.---=|.+=+-.-.
T Consensus 148 gqVlD~~g~~I~~~wRA~ryA 168 (204)
T PF11873_consen 148 GQVLDQDGQPIRWEWRANRYA 168 (204)
T ss_pred heeecCCCCeEeeHhHHHHHH
Confidence 346666554444555444433
No 53
>PF03040 CemA: CemA family; InterPro: IPR004282 Members of this family are probable integral membrane proteins. Their molecular function is unknown. CemA proteins are found in the inner envelope membrane of chloroplasts but not in the thylakoid membrane []. A cyanobacterial member of this family (proton extrusion protein PcxA) is involved in light-induced Na(+)-dependent proton extrusion and has been implicated in CO2 transport, but is probably not a CO2 transporter itself [].; GO: 0016021 integral to membrane
Probab=23.32 E-value=2.4e+02 Score=25.30 Aligned_cols=17 Identities=6% Similarity=0.319 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 019112 8 SFIIPMFVIIILVITCA 24 (346)
Q Consensus 8 ~~~~~~~~~~~~~~~~~ 24 (346)
+++..|+++..++.+..
T Consensus 11 ryll~LI~vP~lI~~l~ 27 (230)
T PF03040_consen 11 RYLLSLIFVPWLISFLS 27 (230)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555556655543
No 54
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=23.00 E-value=4.3e+02 Score=21.76 Aligned_cols=54 Identities=22% Similarity=0.390 Sum_probs=30.2
Q ss_pred HHhCCccCCHHHHHHHHHHHHHHHHHHHHHccCCCCceEEEcccCCCCCHHHHhhhh-cCCCC
Q 019112 47 AQHGRTYKDELEKAMRLTIFKQNLEYIEKANKEGNRTYKLGTNEFSDLTNEEFRASY-TGYNR 108 (346)
Q Consensus 47 ~~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~~~s~~~g~N~fsd~t~~E~~~~~-~~~~~ 108 (346)
...+..-.+.+....|-.+|...++.+--...-. ++|+. .+++|+..++ .|..|
T Consensus 67 ~~~g~~~~~~~~~q~~~qvW~~~V~~~ll~~e~e----klGi~----Vs~~El~d~l~~g~~p 121 (145)
T PF13623_consen 67 QQNGRSPTEQEQNQIRNQVWNQMVQNILLEQEFE----KLGIT----VSDDELQDMLNQGTNP 121 (145)
T ss_pred HHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCc----cCHHHHHHHHhcCCCc
Confidence 3444544333345778889988776543222211 45664 4778888765 34443
No 55
>PF07351 DUF1480: Protein of unknown function (DUF1480); InterPro: IPR009950 This family consists of several hypothetical Enterobacterial proteins of around 80 residues in length. The function of this family is unknown.
Probab=21.77 E-value=2e+02 Score=21.02 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=18.9
Q ss_pred ceEeCCCCCCCCeeEEEEEeecc
Q 019112 278 GVLNAECGDNCDHGVAVVGFGTA 300 (346)
Q Consensus 278 Gi~~~~~~~~~~Hav~iVGyg~~ 300 (346)
.....||.+..+-+|.+=||+.+
T Consensus 27 ~tlsIPCksdpdlcmQLDgWDe~ 49 (80)
T PF07351_consen 27 DTLSIPCKSDPDLCMQLDGWDEH 49 (80)
T ss_pred CeEEeecCCChhheeEecccccC
Confidence 35566798888999999999876
No 56
>PF06842 DUF1242: Protein of unknown function (DUF1242); InterPro: IPR009653 This family consists of a number of eukaryotic proteins of around 72 residues in length. The function of this family is unknown.
Probab=21.62 E-value=54 Score=20.33 Aligned_cols=13 Identities=38% Similarity=0.828 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhh
Q 019112 13 MFVIIILVITCAS 25 (346)
Q Consensus 13 ~~~~~~~~~~~~~ 25 (346)
+.++++++|.|++
T Consensus 2 L~ViLL~ICTCtY 14 (36)
T PF06842_consen 2 LTVILLLICTCTY 14 (36)
T ss_pred hhhHHHHHHHhHh
Confidence 3445566666665
No 57
>PRK00404 tatB sec-independent translocase; Provisional
Probab=21.54 E-value=94 Score=25.65 Aligned_cols=26 Identities=12% Similarity=0.327 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHhCCccCCHHHHHHH
Q 019112 37 SIVEKHEQWMAQHGRTYKDELEKAMR 62 (346)
Q Consensus 37 ~~~~~f~~~~~~~~k~Y~~~~E~~~R 62 (346)
++....-+|..++.|...+..++..|
T Consensus 27 ~laR~lG~~i~~~rr~~~~~k~ei~~ 52 (141)
T PRK00404 27 GAARTAGLWIGRLKRSFNAIKQEVER 52 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666665544443333
No 58
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=20.35 E-value=1.2e+02 Score=27.02 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=15.7
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhccC
Q 019112 4 KFEKSFIIPMFVIIILVITCASQVVSG 30 (346)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (346)
|.++.|=+++.|+++||+++++++...
T Consensus 11 K~N~iLNiaI~IV~lLIiiva~~lf~~ 37 (217)
T PF07423_consen 11 KTNKILNIAIGIVSLLIIIVAYQLFFG 37 (217)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhheec
Confidence 445555555555556666667766653
No 59
>COG4871 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.06 E-value=63 Score=27.23 Aligned_cols=14 Identities=50% Similarity=1.153 Sum_probs=9.3
Q ss_pred cCCCCCc--cHHHHHH
Q 019112 147 KNQGHCG--SCWAFSA 160 (346)
Q Consensus 147 kdQg~cG--sCwAfA~ 160 (346)
.|=|.|| +|.|||.
T Consensus 137 tNCg~CGEqtCmaFAi 152 (193)
T COG4871 137 TNCGKCGEQTCMAFAI 152 (193)
T ss_pred CccccchhHHHHHHHH
Confidence 4555665 6888865
Done!