BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019113
(346 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 36/230 (15%)
Query: 38 TLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKIL------SKPIV----PTELYRAVR 87
TL+RFL+AR +V A +M +C WR D IL KP++ P ++ +
Sbjct: 54 TLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDK 113
Query: 88 DSQLIGMSGYSREEHYIFSSILSQHCHLLQSLPVFAVGVGLSTFDKASVHCYVQSHIQIN 147
D + + F + + + H + + T ++ + V + +
Sbjct: 114 DGRPV-----------YFEELGAVNLHEMNKV----------TSEERMLKNLVWEYESVV 152
Query: 148 EYRDRVILPSASAKHGRPITTCVKVLDMTGLKLS-ALSQIKLLTIISTVDDLNYPEKTNT 206
+YR LP+ S G + T ++D+ G+ +S A S + + S + YPE+
Sbjct: 153 QYR----LPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGK 208
Query: 207 YYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLP 256
+YI+N P+ FS +++ KP L T KI +L S + ELLK + E+LP
Sbjct: 209 FYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLP 258
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 124/264 (46%), Gaps = 43/264 (16%)
Query: 6 HEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRA 65
EA+ QF++++ + +N TL+RFL+AR +++ + +M ++ WR
Sbjct: 40 EEALLQFRSILLE---------KNYKERLDDSTLLRFLRARKFDINASVEMFVETERWRE 90
Query: 66 QNEIDKILSKPIVPTELYRAVRDSQLIGMSGYSREEHYIFSSILSQHCHLLQ--SLPVFA 123
+ + I+ E Y ++++ +E + + Q+ H + P++
Sbjct: 91 EYGANTII-------EDYENNKEAE--------DKERIKLAKMYPQYYHHVDKDGRPLYF 135
Query: 124 V---GVGLS-----TFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDM 175
G+ L T +K + V+ + YR +P+ S + G I T VLD+
Sbjct: 136 AELGGINLKKMYKITTEKQMLRNLVKEYELFATYR----VPACSRRAGYLIETSCTVLDL 191
Query: 176 TGLKLSALSQIKLLTIISTVDDLN---YPEKTNTYYIVNVPYIFSACWKVVKPLLQERTR 232
G+ LS + L+ I V D++ YPE+ +YI++ P+ FS +K+VKP L T
Sbjct: 192 KGISLSNAYHV--LSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTV 249
Query: 233 KKIQVLQGSGRDELLKIMDFESLP 256
KI +L S + ELLK + E+LP
Sbjct: 250 SKIFILGSSYKKELLKQIPIENLP 273
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 121/260 (46%), Gaps = 35/260 (13%)
Query: 6 HEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRA 65
EA+ QF++++ + +N TL+RFL+AR +++ + +M ++ WR
Sbjct: 40 EEALLQFRSILLE---------KNYKERLDDSTLLRFLRARKFDINASVEMFVETERWRE 90
Query: 66 QNEIDKILSKPIVPTELYRAVRDSQLIGMSG-YSREEHYIFSSILSQHCHLLQSLPVFAV 124
+ + I+ E + D + I ++ Y + H++ + L
Sbjct: 91 EYGANTIIED----YENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFEELG------- 139
Query: 125 GVGLS-----TFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLK 179
G+ L T +K + V+ + YR +P+ S + G I T VLD+ G+
Sbjct: 140 GINLKKMYKITTEKQMLRNLVKEYELFATYR----VPACSRRAGYLIETSCTVLDLKGIS 195
Query: 180 LSALSQIKLLTIISTVDDLN---YPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQ 236
LS + L+ I V D++ YPE+ +YI++ P+ FS +K+VKP L T KI
Sbjct: 196 LSNAYHV--LSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIF 253
Query: 237 VLQGSGRDELLKIMDFESLP 256
+L S + ELLK + E+LP
Sbjct: 254 ILGSSYKKELLKQIPIENLP 273
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 105/223 (47%), Gaps = 27/223 (12%)
Query: 39 LVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMSGYS 98
L+R+L+AR ++ K+ ML + +R Q +ID I+S P E+ + GM GY
Sbjct: 38 LLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIIS--WQPPEVIQQYLSG---GMCGYD 92
Query: 99 REEHYIFSSILSQHCHLLQSLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSA 158
+ ++ I+ P+ A G+ S AS +++ ++ E ++L
Sbjct: 93 LDGCPVWYDIIG---------PLDAKGLLFS----ASKQDLLRTKMRECE----LLLQEC 135
Query: 159 S---AKHGRPITTCVKVLDMTGLKLSALSQ--IKLLTIISTVDDLNYPEKTNTYYIVNVP 213
+ K GR + T + D GL L L + ++ + + NYPE ++V P
Sbjct: 136 AHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAP 195
Query: 214 YIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLP 256
+F + ++KP L E TRKKI VL + ++ LLK + + +P
Sbjct: 196 KLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVP 238
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 105/223 (47%), Gaps = 27/223 (12%)
Query: 39 LVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMSGYS 98
L+R+L+AR ++ K+ ML + +R Q +ID I+S P E+ + GM GY
Sbjct: 38 LLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIIS--WQPPEVIQQYLSG---GMCGYD 92
Query: 99 REEHYIFSSILSQHCHLLQSLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSA 158
+ ++ I+ P+ A G+ S AS +++ ++ E ++L
Sbjct: 93 LDGCPVWYDIIG---------PLDAKGLLFS----ASKQDLLRTKMRECE----LLLQEC 135
Query: 159 S---AKHGRPITTCVKVLDMTGLKLSALSQ--IKLLTIISTVDDLNYPEKTNTYYIVNVP 213
+ K GR + T + D GL L L + ++ + + NYPE ++V P
Sbjct: 136 AHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAP 195
Query: 214 YIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLP 256
+F + ++KP L E TRKKI VL + ++ LLK + + +P
Sbjct: 196 KLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVP 238
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 97/223 (43%), Gaps = 27/223 (12%)
Query: 39 LVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMSGYS 98
L+R+L+AR ++ K+ L + +R Q +ID I+S P E+ + G GY
Sbjct: 38 LLRWLRARSFDLQKSEAXLRKHVEFRKQKDIDNIIS--WQPPEVIQQYLSG---GXCGYD 92
Query: 99 REEHYIFSSILSQHCHLLQSLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSA 158
+ ++ I+ P+ A G+ S Q ++ ++L
Sbjct: 93 LDGCPVWYDIIG---------PLDAKGLLFSASK--------QDLLRTKXRECELLLQEC 135
Query: 159 S---AKHGRPITTCVKVLDMTGLKLSALSQ--IKLLTIISTVDDLNYPEKTNTYYIVNVP 213
+ K GR + T + D GL L L + ++ + NYPE ++V P
Sbjct: 136 AHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCXFEENYPETLKRLFVVKAP 195
Query: 214 YIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLP 256
+F + ++KP L E TRKKI VL + ++ LLK + + +P
Sbjct: 196 KLFPVAYNLIKPFLSEDTRKKIXVLGANWKEVLLKHISPDQVP 238
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 89/214 (41%), Gaps = 34/214 (15%)
Query: 39 LVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELY-RAVRDSQLIGMSGY 97
L+RFL+ARD ++ A ++L + WRA+ P + +L+ R++ G G
Sbjct: 52 LLRFLRARDFDLDLAWRLLKNYYKWRAEC--------PEISADLHPRSIIGLLKAGYHGV 103
Query: 98 SREEHYIFSSILSQHCHLLQSLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPS 157
R S +L ++ +D Y + +R +I
Sbjct: 104 LRSRDPTGSKVLIYR---------------IAHWDPKVFTAY-------DVFRVSLITSE 141
Query: 158 ASAKHGRPITTCVK-VLDMTGLKLSALSQI--KLLTIISTVDDLNYPEKTNTYYIVNVPY 214
+ +K + D+ G + S QI + I+ V ++P K +++N P
Sbjct: 142 LIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPV 201
Query: 215 IFSACWKVVKPLLQERTRKKIQVLQGSGRDELLK 248
IF A + ++KP L E+ +++I + + + LL+
Sbjct: 202 IFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQ 235
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 87/214 (40%), Gaps = 34/214 (15%)
Query: 39 LVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELY-RAVRDSQLIGMSGY 97
L+RFL+ARD ++ A ++L + WRA+ P + +L+ R++ G G
Sbjct: 36 LLRFLRARDFDLDLAWRLLKNYYKWRAEC--------PEISADLHPRSIIGLLKAGYHGV 87
Query: 98 SREEHYIFSSILSQHCHLLQSLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPS 157
R S +L ++ +D Y + +R +I
Sbjct: 88 LRSRDPTGSKVLIYR---------------IAHWDPKVFTAY-------DVFRVSLITSE 125
Query: 158 ASAKHGRPITTCVK-VLDMTGLKLSALSQI--KLLTIISTVDDLNYPEKTNTYYIVNVPY 214
+ +K + D+ G + S QI + I+ V ++P K +++N P
Sbjct: 126 LIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPV 185
Query: 215 IFSACWKVVKPLLQERTRKKIQVLQGSGRDELLK 248
IF A + +KP L E+ +++I + + LL+
Sbjct: 186 IFHAVFSXIKPFLTEKIKERIHXHGNNYKQSLLQ 219
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/213 (19%), Positives = 84/213 (39%), Gaps = 54/213 (25%)
Query: 39 LVRFLKARDGNVSKAHKMLMDCLHWRAQN-EIDKILSKPIVPTEL---YRAVRDSQ---- 90
+RF++AR NV +A+++L +++R Q E+ LS V + Y V S+
Sbjct: 95 FLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYG 154
Query: 91 ----LIGMSGYSREEHYIFSSILSQHCHLLQSLPVFAVGVGLSTFDKASVHCYVQSHIQI 146
L + + +E F IL +C +L+ L QI
Sbjct: 155 RVVMLFNIENWQSQE-ITFDEILQAYCFILEKL-------------------LENEETQI 194
Query: 147 NEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQIKLLTIISTVDDL--NYPEKT 204
N + C+ + + G + + ++ + VD L ++P +
Sbjct: 195 NGF-------------------CI-IENFKGFTMQQAASLRTSDLRKMVDMLQDSFPARF 234
Query: 205 NTYYIVNVPYIFSACWKVVKPLLQERTRKKIQV 237
+ ++ P+ F+ + VVKP L+ + +++ V
Sbjct: 235 KAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFV 267
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/213 (19%), Positives = 82/213 (38%), Gaps = 54/213 (25%)
Query: 39 LVRFLKARDGNVSKAHKMLMDCLHWRAQN-EIDKILSKPIVPTEL---YRAVRDSQ---- 90
+RF++AR NV +A+++L +++R Q E+ LS V + Y V S+
Sbjct: 95 FLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYG 154
Query: 91 ----LIGMSGYSREEHYIFSSILSQHCHLLQSLPVFAVGVGLSTFDKASVHCYVQSHIQI 146
L + + +E F IL +C +L+ L QI
Sbjct: 155 RVVXLFNIENWQSQE-ITFDEILQAYCFILEKL-------------------LENEETQI 194
Query: 147 NEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQIKLLTIISTVDDL--NYPEKT 204
N + C+ + + G + ++ + VD L ++P
Sbjct: 195 NGF-------------------CI-IENFKGFTXQQAASLRTSDLRKXVDXLQDSFPAWF 234
Query: 205 NTYYIVNVPYIFSACWKVVKPLLQERTRKKIQV 237
+ ++ P+ F+ + VVKP L+ + +++ V
Sbjct: 235 KAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFV 267
>pdb|2GB7|A Chain A, Metal-Depleted Ecl18ki In Complex With Uncleaved, Modified
Dna
pdb|2GB7|B Chain B, Metal-Depleted Ecl18ki In Complex With Uncleaved, Modified
Dna
pdb|2GB7|C Chain C, Metal-Depleted Ecl18ki In Complex With Uncleaved, Modified
Dna
pdb|2GB7|D Chain D, Metal-Depleted Ecl18ki In Complex With Uncleaved, Modified
Dna
pdb|2FQZ|A Chain A, Metal-Depleted Ecl18ki In Complex With Uncleaved Dna
pdb|2FQZ|B Chain B, Metal-Depleted Ecl18ki In Complex With Uncleaved Dna
pdb|2FQZ|C Chain C, Metal-Depleted Ecl18ki In Complex With Uncleaved Dna
pdb|2FQZ|D Chain D, Metal-Depleted Ecl18ki In Complex With Uncleaved Dna
Length = 305
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 191 IISTVDDLNYPEKTNTYYIVN-VPYIFSA---CWKVVKPLLQERTRKKIQVL 238
+ T DL Y +K + Y++ N YI + CWK +P +E T + + L
Sbjct: 28 VYKTFCDLGYDQKNSDYFLNNPSEYIIAMRKNCWKEFEPFEKEFTTRMLSYL 79
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
pdb|4FMM|B Chain B, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
Length = 360
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 199 NYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKI 235
+YPE+ + N+P++ K++ P + TR+K+
Sbjct: 232 HYPERLGKALLTNIPWLAWTFLKLIHPFIDPLTREKL 268
>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK
Protein
Length = 147
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 221 KVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLPHFC 259
K KP+ +ER +I L+ R LL ++DF+ C
Sbjct: 77 KTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHC 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,407,796
Number of Sequences: 62578
Number of extensions: 362730
Number of successful extensions: 920
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 896
Number of HSP's gapped (non-prelim): 22
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)