Query 019113
Match_columns 346
No_of_seqs 254 out of 1299
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 06:47:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019113.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019113hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1470 Phosphatidylinositol t 100.0 3E-40 6.6E-45 302.9 19.5 199 33-268 46-244 (324)
2 KOG1471 Phosphatidylinositol t 100.0 3.9E-40 8.5E-45 311.8 19.8 235 3-270 20-260 (317)
3 PF00650 CRAL_TRIO: CRAL/TRIO 100.0 7E-30 1.5E-34 217.2 9.6 154 86-266 3-159 (159)
4 smart00516 SEC14 Domain in hom 100.0 1.5E-27 3.2E-32 202.6 14.9 139 118-267 19-157 (158)
5 cd00170 SEC14 Sec14p-like lipi 99.9 1.1E-23 2.3E-28 177.4 12.9 138 116-266 18-157 (157)
6 PF13716 CRAL_TRIO_2: Divergen 99.5 2.7E-14 5.8E-19 120.3 4.5 139 112-270 7-147 (149)
7 PF03765 CRAL_TRIO_N: CRAL/TRI 99.1 2.9E-10 6.3E-15 79.2 6.7 54 6-60 1-55 (55)
8 KOG4406 CDC42 Rho GTPase-activ 97.9 5.5E-05 1.2E-09 71.9 9.5 126 114-255 89-215 (467)
9 PF14555 UBA_4: UBA-like domai 87.1 1.7 3.6E-05 28.2 4.5 25 34-58 13-37 (43)
10 PF02845 CUE: CUE domain; Int 80.0 5.3 0.00011 25.6 4.6 27 33-59 14-40 (42)
11 smart00546 CUE Domain that may 68.9 15 0.00032 23.5 4.6 26 33-58 15-40 (43)
12 PF00627 UBA: UBA/TS-N domain; 64.0 12 0.00027 23.1 3.4 25 33-57 13-37 (37)
13 cd00194 UBA Ubiquitin Associat 60.3 15 0.00033 22.5 3.4 27 32-58 11-37 (38)
14 smart00165 UBA Ubiquitin assoc 60.3 15 0.00033 22.4 3.4 26 32-57 11-36 (37)
15 PF06972 DUF1296: Protein of u 38.1 81 0.0018 22.0 4.3 26 34-59 19-44 (60)
16 PF03641 Lysine_decarbox: Poss 37.3 70 0.0015 26.0 4.8 43 206-250 86-133 (133)
17 KOG1534 Putative transcription 31.3 71 0.0015 28.7 4.0 104 144-253 76-192 (273)
18 smart00804 TAP_C C-terminal do 29.6 99 0.0022 21.8 3.8 27 33-59 24-50 (63)
19 COG2961 ComJ Protein involved 29.3 40 0.00086 30.9 2.1 27 205-231 237-263 (279)
20 PF04378 RsmJ: Ribosomal RNA s 27.9 40 0.00087 30.7 2.0 29 205-233 206-234 (245)
21 PF07862 Nif11: Nitrogen fixat 27.1 1.6E+02 0.0035 19.1 4.4 45 5-53 2-46 (49)
22 PF08938 HBS1_N: HBS1 N-termin 25.3 57 0.0012 24.0 2.1 25 35-59 45-69 (79)
23 PF13432 TPR_16: Tetratricopep 24.1 2.3E+02 0.0049 18.9 6.0 46 6-62 14-59 (65)
24 KOG4178 Soluble epoxide hydrol 22.8 1.4E+02 0.003 28.5 4.5 19 197-215 131-149 (322)
25 PRK09377 tsf elongation factor 22.0 2E+02 0.0043 27.0 5.4 43 1-59 1-43 (290)
26 PF03474 DMA: DMRTA motif; In 21.7 1.7E+02 0.0036 18.7 3.3 24 34-57 15-38 (39)
27 TIGR02364 dha_pts dihydroxyace 20.2 1.4E+02 0.0029 24.2 3.5 50 167-226 60-109 (125)
No 1
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=3e-40 Score=302.92 Aligned_cols=199 Identities=25% Similarity=0.393 Sum_probs=172.4
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhCchhhhhcCCCCCHHHHHHhhhhcccccccccccchhhhhhhhhcc
Q 019113 33 GYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMSGYSREEHYIFSSILSQH 112 (346)
Q Consensus 33 ~~~d~~LlRFLra~~~dv~~A~~~l~~~l~wR~~~~id~i~~~~~~~~~~~~~l~~~~~~~~~G~d~~~~~f~~~~~~~~ 112 (346)
.++|++++||||||+|||++|.+||.++|.||+++++...+ ...|+..++ ..+.+++.|+|+.
T Consensus 46 ~~~d~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~~----~~~Ev~~e~-~tGK~yi~G~D~~------------ 108 (324)
T KOG1470|consen 46 WCSDACLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEVI----EADEVAAEL-ETGKAYILGHDKD------------ 108 (324)
T ss_pred cCcHHHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCcccc----CHHHHHHHh-hcCcEEEecccCC------------
Confidence 46899999999999999999999999999999999976622 223433333 3578889999988
Q ss_pred cCCCCCCeEEEEecCCCCccchhHHHHHHHHHHHHHHHhhhcchhhhhhcCCCcceEEEEEeCCCCCCCCCchHHHHHHH
Q 019113 113 CHLLQSLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQIKLLTII 192 (346)
Q Consensus 113 ~~D~~GrPV~~~~~g~~~~~~~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~v~~~v~I~Dl~g~~l~~~~~~~~~~~~ 192 (346)
||||+|+++..+.....+.+.+.+..++++|... ..++++++++++++|++|+|+++++ ++..+.+
T Consensus 109 -----gRPVl~~~~~~~~qn~~t~~~~~r~~Vy~mE~Ai--------~~lp~~qe~~~~L~D~~~fs~sN~d-~~~~k~~ 174 (324)
T KOG1470|consen 109 -----GRPVLYLRPRPHRQNTKTQKELERLLVYTLENAI--------LFLPPGQEQFVWLFDLTGFSMSNPD-IKFLKEL 174 (324)
T ss_pred -----CCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHH--------HhCCCCcceEEEEEecccCcccCCC-cHHHHHH
Confidence 9999999887766666678888888888888654 3445678899999999999999988 7899999
Q ss_pred HHhhhccCccccCcEEEEcCChhHHHHHHHHhhccchhcccceEEcCCCChhHHhccCCCCCCCccccCCCCCccc
Q 019113 193 STVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLPHFCRREDSGSSR 268 (346)
Q Consensus 193 ~~i~~~~YPerl~~i~ivNaP~~f~~~~~lvkpfL~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~~ygg~~GGt~~ 268 (346)
++++|+||||||+..+++|+||+|..+|+++||||++.|++||+|..+ .+.|.+|||+++||..| ||+..
T Consensus 175 ~~~lq~hYPErLg~a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~--~~~l~~~~d~~~l~s~~----GG~~~ 244 (324)
T KOG1470|consen 175 LHILQDHYPERLGKALLVNAPWIFQPFWKIIKPFLDPKTASKVKFVEP--KDDLSEYFDESQLPSLF----GGKLL 244 (324)
T ss_pred HHHHHHhChHHhhhhhhcCChHHHHHHHHHhhhccChhhhceeEEecC--hhHHHhhCCccccchhh----CCCcc
Confidence 999999999999999999999999999999999999999999999875 56699999999999999 88653
No 2
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=3.9e-40 Score=311.77 Aligned_cols=235 Identities=31% Similarity=0.454 Sum_probs=198.8
Q ss_pred cchHHHHHHHHHHHhhcchhHHHHHhhcccCCChHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhCchhhhhcCCCCCHHH
Q 019113 3 TVSHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTEL 82 (346)
Q Consensus 3 ~~~~~~l~elr~~l~~~~~~l~~~~~~~~~~~~d~~LlRFLra~~~dv~~A~~~l~~~l~wR~~~~id~i~~~~~~~~~~ 82 (346)
+..+++++++| ++...+. ......+|.+|+||||||+||+++|.+||.+++.||+++++|+|+.+ ...
T Consensus 20 ~~~~~~i~~lr-~~~~~~~-------l~~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~-~~~--- 87 (317)
T KOG1471|consen 20 ESEEAVIAQLR-WLLQKPH-------LPNKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFED-FEE--- 87 (317)
T ss_pred HHHHHHHHHHH-HHhhccC-------CCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhc-ccc---
Confidence 34566677777 3333321 11235678899999999999999999999999999999999999876 211
Q ss_pred HHHhhhhcccccccccccchhhhhhhhhcccCCCCCCeEEEEecCCCCcc----chhHHHHHHHHHHHHHHHhhhcchhh
Q 019113 83 YRAVRDSQLIGMSGYSREEHYIFSSILSQHCHLLQSLPVFAVGVGLSTFD----KASVHCYVQSHIQINEYRDRVILPSA 158 (346)
Q Consensus 83 ~~~l~~~~~~~~~G~d~~~~~f~~~~~~~~~~D~~GrPV~~~~~g~~~~~----~~~~~~~l~~~i~~~E~~~~~~l~~~ 158 (346)
...+.++.+.+++|+|++ |+||++.+.|..+.. .....+++++++..+|.....+++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~-----------------g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~ 150 (317)
T KOG1471|consen 88 DDELLKYYPQGLHGVDKE-----------------GRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELE 150 (317)
T ss_pred chhhhhhccccccccCCC-----------------CCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333567888999988 999999999998754 45778899999999998888888877
Q ss_pred hhhcCCCcceEEEEEeCCCCCCCCCch--HHHHHHHHHhhhccCccccCcEEEEcCChhHHHHHHHHhhccchhcccceE
Q 019113 159 SAKHGRPITTCVKVLDMTGLKLSALSQ--IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQ 236 (346)
Q Consensus 159 ~~~~~~~v~~~v~I~Dl~g~~l~~~~~--~~~~~~~~~i~~~~YPerl~~i~ivNaP~~f~~~~~lvkpfL~~~t~~KI~ 236 (346)
.+..+++++|++.|+||+|+++++++. ...++.++.++|++|||+++++||||+|++|+++|+++||||+++|++||+
T Consensus 151 ~~~~~~~~~g~~~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~ 230 (317)
T KOG1471|consen 151 LKTGERQISGIVTIFDLKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIH 230 (317)
T ss_pred HHHhcCCcceeEEEEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhhe
Confidence 777678999999999999999999964 568899999999999999999999999999999999999999999999999
Q ss_pred EcCCCChhHHhccCCCCCCCccccCCCCCcccCC
Q 019113 237 VLQGSGRDELLKIMDFESLPHFCRREDSGSSRSS 270 (346)
Q Consensus 237 ~~~~~~~~~L~~~i~~~~LP~~ygg~~GGt~~~~ 270 (346)
++++++.++|.++|+++.||++| ||++.+.
T Consensus 231 ~~~~~~~~~L~k~i~~~~LP~~y----GG~~~~~ 260 (317)
T KOG1471|consen 231 VLHSKDKESLLKYIPPEVLPEEY----GGTCGDL 260 (317)
T ss_pred ecCCCchhhhhhhCCHhhCcccc----CCCcccc
Confidence 77888999999999999999999 8888774
No 3
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.96 E-value=7e-30 Score=217.22 Aligned_cols=154 Identities=29% Similarity=0.468 Sum_probs=124.2
Q ss_pred hhhhcccccccccccchhhhhhhhhcccCCCCCCeEEEEecCCCCccchhHHHHHHHHHHHHHHHhhhcchhhhhhcCCC
Q 019113 86 VRDSQLIGMSGYSREEHYIFSSILSQHCHLLQSLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRP 165 (346)
Q Consensus 86 l~~~~~~~~~G~d~~~~~f~~~~~~~~~~D~~GrPV~~~~~g~~~~~~~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~ 165 (346)
+.+.++.+++|+|++ ||||++++++++++.+.+.+++++++++.+|...+.. +. +.+
T Consensus 3 ~~~~~~~~~~g~D~~-----------------gr~v~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~-~~-----~~~ 59 (159)
T PF00650_consen 3 ILKSGPFYLHGRDKD-----------------GRPVIYIRLGRFDPKKFSPEDVIRFFVYLLERMLKRM-PE-----GGQ 59 (159)
T ss_dssp HHTTSCEEEEEE-TT-----------------S-EEEEEEGTT--HHTS-HHHHHHHHHHHHHHHHHTH-HH-----TSH
T ss_pred HHCCeeEEECCCCCC-----------------cCEEEEEEcccCCCCcCCHHHHHHHHHHHHHHHHhhh-cc-----ccc
Confidence 445678888888887 9999999999999887788899999999999876432 11 456
Q ss_pred cceEEEEEeCCCCCCCCCch--HHHHHHHHHhhhccCccccCcEEEEcCChhHHHHHHHHhhccchhcccceEEcCCC-C
Q 019113 166 ITTCVKVLDMTGLKLSALSQ--IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGS-G 242 (346)
Q Consensus 166 v~~~v~I~Dl~g~~l~~~~~--~~~~~~~~~i~~~~YPerl~~i~ivNaP~~f~~~~~lvkpfL~~~t~~KI~~~~~~-~ 242 (346)
++++++|+|++|+++++++. ++.++.++++++++||||++++||+|+|++|+++|++++|||+++|++||+++++. +
T Consensus 60 ~~~~~~iiD~~g~~~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~ 139 (159)
T PF00650_consen 60 VEGIVVIIDLSGFSLSNFDWWPISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDW 139 (159)
T ss_dssp HH-EEEEEE-TT--HHHHHCHHHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCH
T ss_pred ceeEEEEEeCCCceEeccccchhhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCccc
Confidence 78999999999999988863 67889999999999999999999999999999999999999999999999999653 3
Q ss_pred hhHHhccCCCCCCCccccCCCCCc
Q 019113 243 RDELLKIMDFESLPHFCRREDSGS 266 (346)
Q Consensus 243 ~~~L~~~i~~~~LP~~ygg~~GGt 266 (346)
.+.|.++|++++||++| ||+
T Consensus 140 ~~~l~~~i~~~~lP~~~----GG~ 159 (159)
T PF00650_consen 140 KAKLKEYIDPEQLPVEY----GGT 159 (159)
T ss_dssp CHHHCCCSTGGGSBGGG----TSS
T ss_pred HHHHHhhCCHhHCchhc----CCC
Confidence 47999999999999999 775
No 4
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.95 E-value=1.5e-27 Score=202.63 Aligned_cols=139 Identities=27% Similarity=0.466 Sum_probs=127.4
Q ss_pred CCeEEEEecCCCCccchhHHHHHHHHHHHHHHHhhhcchhhhhhcCCCcceEEEEEeCCCCCCCCCchHHHHHHHHHhhh
Q 019113 118 SLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQIKLLTIISTVDD 197 (346)
Q Consensus 118 GrPV~~~~~g~~~~~~~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~v~~~v~I~Dl~g~~l~~~~~~~~~~~~~~i~~ 197 (346)
||||+++++++++++..+.+++++++++.+|...+. ...+.+++++++|+|++|+++++++ ++.++.++.+++
T Consensus 19 GrpV~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~~~i~D~~~~~~~~~~-~~~lk~~~~~~~ 91 (158)
T smart00516 19 GRPVLIFRAGRFDLKSVTLEELLRYLVYVLEKILQR------EKKTGGIEGFTVIFDLKGLSMSNPD-LSVLRKILKILQ 91 (158)
T ss_pred cCEEEEEeccccccCcCCHHHHHHHHHHHHHHHHHH------HhcCCCeeeEEEEEECCCCCccccc-HHHHHHHHHHHH
Confidence 999999999999888889999999999999977542 1235678999999999999999965 688999999999
Q ss_pred ccCccccCcEEEEcCChhHHHHHHHHhhccchhcccceEEcCCCChhHHhccCCCCCCCccccCCCCCcc
Q 019113 198 LNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLPHFCRREDSGSS 267 (346)
Q Consensus 198 ~~YPerl~~i~ivNaP~~f~~~~~lvkpfL~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~~ygg~~GGt~ 267 (346)
.+||++++++||||+|++++++|+++++|++++|++||+++++++.+.|.++||+++||++| ||++
T Consensus 92 ~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~i~~~~lP~~~----GG~~ 157 (158)
T smart00516 92 DHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDPEQLPEEL----GGTL 157 (158)
T ss_pred HHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCCCHHHHHhhCCHhhCcHhh----CCCC
Confidence 99999999999999999999999999999999999999999876789999999999999999 8886
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.91 E-value=1.1e-23 Score=177.36 Aligned_cols=138 Identities=33% Similarity=0.515 Sum_probs=118.2
Q ss_pred CCCCeEEEEecCCCCccc-hhHHHHHHHHHHHHHHHhhhcchhhhhhcCCCcceEEEEEeCCCCCCCCCc-hHHHHHHHH
Q 019113 116 LQSLPVFAVGVGLSTFDK-ASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALS-QIKLLTIIS 193 (346)
Q Consensus 116 ~~GrPV~~~~~g~~~~~~-~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~v~~~v~I~Dl~g~~l~~~~-~~~~~~~~~ 193 (346)
++||||+++++++.++.. ...+++++++++.+|...+.. ....+++++|+|++|++++++. .++.++.++
T Consensus 18 ~~gr~V~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~--------~~~~~~~~~i~D~~~~~~~~~~~~~~~~k~~~ 89 (157)
T cd00170 18 KEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQED--------DEQVEGFVVIIDLKGLSLSHLLPDPSLLKKIL 89 (157)
T ss_pred CCcCEEEEEecCCcchhhcCCHHHHHHHHHHHHHHHHhhh--------hhcccceEEEEECCCCChhccchhHHHHHHHH
Confidence 349999999999655543 234788899888888765421 1233689999999999999884 467899999
Q ss_pred HhhhccCccccCcEEEEcCChhHHHHHHHHhhccchhcccceEEcCCCChhHHhccCCCCCCCccccCCCCCc
Q 019113 194 TVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLPHFCRREDSGS 266 (346)
Q Consensus 194 ~i~~~~YPerl~~i~ivNaP~~f~~~~~lvkpfL~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~~ygg~~GGt 266 (346)
.+++++||++++++||||+|++|+++|+++++|+++++++||++++++ .++|.++|++++||.+| ||+
T Consensus 90 ~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~-~~~L~~~i~~~~Lp~~~----GG~ 157 (157)
T cd00170 90 KILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSD-KEELLKYIDKEQLPEEY----GGT 157 (157)
T ss_pred HHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCC-HHHHHhhCChhhCcHhh----CCC
Confidence 999999999999999999999999999999999999999999998754 89999999999999999 774
No 6
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.48 E-value=2.7e-14 Score=120.35 Aligned_cols=139 Identities=16% Similarity=0.179 Sum_probs=90.4
Q ss_pred ccCCCCCCeEEEEecCCCCccchhHHHHHHHHHHHHHHHhhhcchhhhhhcCCCcceEEEEEeCCCCCCCCCchHHHHHH
Q 019113 112 HCHLLQSLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQIKLLTI 191 (346)
Q Consensus 112 ~~~D~~GrPV~~~~~g~~~~~~~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~v~~~v~I~Dl~g~~l~~~~~~~~~~~ 191 (346)
.++|++||||+++...+. +.....+.++.+.+..+. +. -...++++|+|+++.+..+-+....++.
T Consensus 7 gG~d~~g~pV~~~~~~~~-~~~~~~~~ll~yl~~~l~-------~~------~~~~~f~vVid~~~~~~~~~~~~~~l~~ 72 (149)
T PF13716_consen 7 GGRDREGRPVVVFIASRL-PSSDDLERLLLYLLSTLS-------EE------VVDKPFSVVIDHTGFSRSSEPSLSWLKQ 72 (149)
T ss_dssp EEEBTTS-EEEEEEGGG--C-TTHHHHHHHHHHHHH--------TT------TTTS-EEEEEE-TT--GGG---HHHHHH
T ss_pred cccCCCcCEEEEEECCcC-cchhhHHHHHHHHHHhhh-------HH------hcCCCEEEEEEcCCCccccCCchHHHHH
Confidence 344455999999998877 544455555555433321 11 1124699999999998866655778899
Q ss_pred HHHhhhccCccccCcEEEEcCChhHHHHH-HHHhhccchhc-ccceEEcCCCChhHHhccCCCCCCCccccCCCCCcccC
Q 019113 192 ISTVDDLNYPEKTNTYYIVNVPYIFSACW-KVVKPLLQERT-RKKIQVLQGSGRDELLKIMDFESLPHFCRREDSGSSRS 269 (346)
Q Consensus 192 ~~~i~~~~YPerl~~i~ivNaP~~f~~~~-~lvkpfL~~~t-~~KI~~~~~~~~~~L~~~i~~~~LP~~ygg~~GGt~~~ 269 (346)
+..++...|+..++++||+|++++++.++ .+.+++++.+. ..||.++.+ .++|.++||+++||..+ ||+..+
T Consensus 73 ~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~s--l~~L~~~i~~~qL~~~l----p~~~~~ 146 (149)
T PF13716_consen 73 LYKLLPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSS--LSELSKHIDPSQLPESL----PGVLQY 146 (149)
T ss_dssp TTTSS-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESS--TCGGGGTSGGGG----------HHH--
T ss_pred HHHHHHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECC--HHHHHhhCCHHHhcccC----CCEEec
Confidence 99999999999999999999999999999 56678889998 999998874 89999999999999999 888765
Q ss_pred C
Q 019113 270 S 270 (346)
Q Consensus 270 ~ 270 (346)
+
T Consensus 147 d 147 (149)
T PF13716_consen 147 D 147 (149)
T ss_dssp -
T ss_pred C
Confidence 4
No 7
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=99.09 E-value=2.9e-10 Score=79.16 Aligned_cols=54 Identities=28% Similarity=0.402 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhhcchhHHHHH-hhcccCCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 019113 6 HEAVTQFQALMDQVDEPLKITF-QNIHRGYPTETLVRFLKARDGNVSKAHKMLMDC 60 (346)
Q Consensus 6 ~~~l~elr~~l~~~~~~l~~~~-~~~~~~~~d~~LlRFLra~~~dv~~A~~~l~~~ 60 (346)
++++++|++.+.+..... ..+ ...+...+|.+|+||||||+|||++|.+||.+|
T Consensus 1 k~~l~~l~~~l~~~~~~~-~~~~~~~~~~~~d~~llRFLRARkf~v~~A~~mL~~t 55 (55)
T PF03765_consen 1 KQKLKQLREHLSELDEKA-PGLWDDEKEDHDDNFLLRFLRARKFDVEKAFKMLKKT 55 (55)
T ss_dssp HHHHHHHHHHHHH--GGG-THHHTTHTSS-SHHHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccch-hcccccccCCCCHHHHHHHHHHccCCHHHHHHHHHhC
Confidence 578999999999864322 112 234567799999999999999999999999875
No 8
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=97.93 E-value=5.5e-05 Score=71.91 Aligned_cols=126 Identities=16% Similarity=0.176 Sum_probs=94.2
Q ss_pred CCCCCCeEEEEecCCCCccc-hhHHHHHHHHHHHHHHHhhhcchhhhhhcCCCcceEEEEEeCCCCCCCCCchHHHHHHH
Q 019113 114 HLLQSLPVFAVGVGLSTFDK-ASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQIKLLTII 192 (346)
Q Consensus 114 ~D~~GrPV~~~~~g~~~~~~-~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~v~~~v~I~Dl~g~~l~~~~~~~~~~~~ 192 (346)
+|++||+|+.+...++...+ ..-..+++..++..++..+ +-.+.|+=-.|+...+.+.+.++...
T Consensus 89 ~D~~gr~iivv~a~rlp~~~eld~~~li~~~v~~id~~Ve--------------~DYt~vYfh~gl~s~nkp~l~~l~~a 154 (467)
T KOG4406|consen 89 KDKQGRKIIVVYACRLPSSSELDDIRLISYLVYTIDKYVE--------------NDYTLVYFHHGLPSDNKPYLQLLFDA 154 (467)
T ss_pred ccccCCeeEEEEEecCCchhhhhhHHHHHHHHHHHHHHHh--------------ccceeeehhcCCcccccchHHHHHHH
Confidence 46669999999988875532 1112256666656555431 11445555567777777667766666
Q ss_pred HHhhhccCccccCcEEEEcCChhHHHHHHHHhhccchhcccceEEcCCCChhHHhccCCCCCC
Q 019113 193 STVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESL 255 (346)
Q Consensus 193 ~~i~~~~YPerl~~i~ivNaP~~f~~~~~lvkpfL~~~t~~KI~~~~~~~~~~L~~~i~~~~L 255 (346)
..-+..+|---++.+|+|..-|+..++|+++|||++.+..+||+-+. ..++|.+++.-++|
T Consensus 155 Yke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~n--~lseL~~~l~l~rL 215 (467)
T KOG4406|consen 155 YKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYFN--SLSELFEALKLNRL 215 (467)
T ss_pred HHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEee--hHHHHHHhhhhhhh
Confidence 66666789999999999999999999999999999999999999876 58999999887765
No 9
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=87.09 E-value=1.7 Score=28.16 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=20.3
Q ss_pred CChHHHHHHHhhcCCCHHHHHHHHH
Q 019113 34 YPTETLVRFLKARDGNVSKAHKMLM 58 (346)
Q Consensus 34 ~~d~~LlRFLra~~~dv~~A~~~l~ 58 (346)
.++.....||.+.+||++.|+..+-
T Consensus 13 ~~~~~A~~~L~~~~wdle~Av~~y~ 37 (43)
T PF14555_consen 13 ADEDVAIQYLEANNWDLEAAVNAYF 37 (43)
T ss_dssp SSHHHHHHHHHHTTT-HHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3566899999999999999998763
No 10
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=79.97 E-value=5.3 Score=25.57 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=22.8
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHH
Q 019113 33 GYPTETLVRFLKARDGNVSKAHKMLMD 59 (346)
Q Consensus 33 ~~~d~~LlRFLra~~~dv~~A~~~l~~ 59 (346)
+++...+.+-|+++++|++.|..+|-+
T Consensus 14 ~~~~~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 14 DLDREVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp SS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 567789999999999999999998854
No 11
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=68.88 E-value=15 Score=23.54 Aligned_cols=26 Identities=27% Similarity=0.403 Sum_probs=22.6
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHH
Q 019113 33 GYPTETLVRFLKARDGNVSKAHKMLM 58 (346)
Q Consensus 33 ~~~d~~LlRFLra~~~dv~~A~~~l~ 58 (346)
+.+...+.+-|+++++|++.|...|.
T Consensus 15 ~l~~~~I~~~L~~~~g~ve~~i~~LL 40 (43)
T smart00546 15 NLDEEVIKAVLEANNGNVEATINNLL 40 (43)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 46677899999999999999998874
No 12
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=63.95 E-value=12 Score=23.05 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=21.1
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHH
Q 019113 33 GYPTETLVRFLKARDGNVSKAHKML 57 (346)
Q Consensus 33 ~~~d~~LlRFLra~~~dv~~A~~~l 57 (346)
+++.....+-|+++++|+++|...|
T Consensus 13 Gf~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 13 GFSREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp TS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHhC
Confidence 6778899999999999999998764
No 13
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=60.32 E-value=15 Score=22.52 Aligned_cols=27 Identities=30% Similarity=0.494 Sum_probs=23.5
Q ss_pred cCCChHHHHHHHhhcCCCHHHHHHHHH
Q 019113 32 RGYPTETLVRFLKARDGNVSKAHKMLM 58 (346)
Q Consensus 32 ~~~~d~~LlRFLra~~~dv~~A~~~l~ 58 (346)
-+++.....+-|+++++|+++|...|.
T Consensus 11 mGf~~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 11 MGFSREEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence 378888999999999999999987663
No 14
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=60.26 E-value=15 Score=22.41 Aligned_cols=26 Identities=35% Similarity=0.625 Sum_probs=22.7
Q ss_pred cCCChHHHHHHHhhcCCCHHHHHHHH
Q 019113 32 RGYPTETLVRFLKARDGNVSKAHKML 57 (346)
Q Consensus 32 ~~~~d~~LlRFLra~~~dv~~A~~~l 57 (346)
-+++.....+-|+++++|+++|..-|
T Consensus 11 mGf~~~~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 11 MGFSREEALKALRAANGNVERAAEYL 36 (37)
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 37888899999999999999998754
No 15
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=38.09 E-value=81 Score=21.99 Aligned_cols=26 Identities=19% Similarity=0.232 Sum_probs=23.3
Q ss_pred CChHHHHHHHhhcCCCHHHHHHHHHH
Q 019113 34 YPTETLVRFLKARDGNVSKAHKMLMD 59 (346)
Q Consensus 34 ~~d~~LlRFLra~~~dv~~A~~~l~~ 59 (346)
++|+.+.--|+-++.|+.+|.++|..
T Consensus 19 hse~eIya~L~ecnMDpnea~qrLL~ 44 (60)
T PF06972_consen 19 HSEEEIYAMLKECNMDPNEAVQRLLS 44 (60)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 68889999999999999999999854
No 16
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=37.35 E-value=70 Score=25.97 Aligned_cols=43 Identities=7% Similarity=0.233 Sum_probs=35.0
Q ss_pred cEEEEcCChhHHHHHHHH-----hhccchhcccceEEcCCCChhHHhccC
Q 019113 206 TYYIVNVPYIFSACWKVV-----KPLLQERTRKKIQVLQGSGRDELLKIM 250 (346)
Q Consensus 206 ~i~ivNaP~~f~~~~~lv-----kpfL~~~t~~KI~~~~~~~~~~L~~~i 250 (346)
-++++|..-++..++..+ ..|+++...+.+.++. +.+++.++|
T Consensus 86 Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d--~~~e~~~~i 133 (133)
T PF03641_consen 86 PIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVD--DPEEALEYI 133 (133)
T ss_dssp EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEES--SHHHHHHHH
T ss_pred CEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeC--CHHHHHhhC
Confidence 689999887888888877 4789999999999876 488877654
No 17
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=31.31 E-value=71 Score=28.68 Aligned_cols=104 Identities=13% Similarity=0.224 Sum_probs=56.4
Q ss_pred HHHHHHHhhhcchhhhhhcCCCcceEEEEEeCCCC-C-CCCCchHHHHHHHHHhhhccCccccCcEEEE------cCChh
Q 019113 144 IQINEYRDRVILPSASAKHGRPITTCVKVLDMTGL-K-LSALSQIKLLTIISTVDDLNYPEKTNTYYIV------NVPYI 215 (346)
Q Consensus 144 i~~~E~~~~~~l~~~~~~~~~~v~~~v~I~Dl~g~-~-l~~~~~~~~~~~~~~i~~~~YPerl~~i~iv------NaP~~ 215 (346)
++++||...-+ +-..... +.++.-.+|+||-|- - +.|+ .++++++.-++. .-.++..+|++ ....+
T Consensus 76 v~cmEyl~~Nl-dwL~~~~-Gd~eddylifDcPGQIELytH~---pVm~~iv~hl~~-~~F~~c~Vylldsqf~vD~~Kf 149 (273)
T KOG1534|consen 76 VYCMEYLLENL-DWLEEEI-GDVEDDYLIFDCPGQIELYTHL---PVMPQIVEHLKQ-WNFNVCVVYLLDSQFLVDSTKF 149 (273)
T ss_pred hhHHHHHHHHH-HHHHhhc-cCccCCEEEEeCCCeeEEeecC---hhHHHHHHHHhc-ccCceeEEEEeccchhhhHHHH
Confidence 55666655332 1111122 356677899999773 2 2444 456666555554 23344555555 45556
Q ss_pred HHHHHHHHhhccchh-----cccceEEcCCCChhHHhccCCCC
Q 019113 216 FSACWKVVKPLLQER-----TRKKIQVLQGSGRDELLKIMDFE 253 (346)
Q Consensus 216 f~~~~~lvkpfL~~~-----t~~KI~~~~~~~~~~L~~~i~~~ 253 (346)
++.+.+-+..++.-. ..+|.-.+++..+++|.++.+++
T Consensus 150 iSG~lsAlsAMi~lE~P~INvlsKMDLlk~~~k~~l~~Fl~~d 192 (273)
T KOG1534|consen 150 ISGCLSALSAMISLEVPHINVLSKMDLLKDKNKKELERFLNPD 192 (273)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhHHHHhhhhhHHHHHHhcCCc
Confidence 777777666655433 33444444444566676666655
No 18
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=29.57 E-value=99 Score=21.81 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=23.9
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHH
Q 019113 33 GYPTETLVRFLKARDGNVSKAHKMLMD 59 (346)
Q Consensus 33 ~~~d~~LlRFLra~~~dv~~A~~~l~~ 59 (346)
+....+..+.|...+||.+.|.+.+.+
T Consensus 24 gmn~~~s~~cLe~~~Wd~~~Al~~F~~ 50 (63)
T smart00804 24 GMNAEYSQMCLEDNNWDYERALKNFTE 50 (63)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 566779999999999999999998865
No 19
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=29.32 E-value=40 Score=30.86 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=23.6
Q ss_pred CcEEEEcCChhHHHHHHHHhhccchhc
Q 019113 205 NTYYIVNVPYIFSACWKVVKPLLQERT 231 (346)
Q Consensus 205 ~~i~ivNaP~~f~~~~~lvkpfL~~~t 231 (346)
..++|||+||-+..-...+-|+|....
T Consensus 237 SGMivINPPwtle~ql~~~LP~L~~~L 263 (279)
T COG2961 237 SGMIVINPPWTLEQQLRAALPWLTTLL 263 (279)
T ss_pred eeEEEECCCccHHHHHHHHHHHHHHHh
Confidence 579999999999999999999887653
No 20
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=27.87 E-value=40 Score=30.72 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=22.5
Q ss_pred CcEEEEcCChhHHHHHHHHhhccchhccc
Q 019113 205 NTYYIVNVPYIFSACWKVVKPLLQERTRK 233 (346)
Q Consensus 205 ~~i~ivNaP~~f~~~~~lvkpfL~~~t~~ 233 (346)
..++|||+||-+....+-+-|+|.+....
T Consensus 206 SGm~iiNPPw~l~~~l~~~l~~L~~~L~~ 234 (245)
T PF04378_consen 206 SGMLIINPPWTLDEELEEILPWLAETLAQ 234 (245)
T ss_dssp EEEEEES--TTHHHHHHHHHHHHHHHSST
T ss_pred ceEEEEcCCccHHHHHHHHHHHHHHHhCc
Confidence 68999999999999998888888776543
No 21
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=27.10 E-value=1.6e+02 Score=19.13 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHhhcchhHHHHHhhcccCCChHHHHHHHhhcCCCHHHH
Q 019113 5 SHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKA 53 (346)
Q Consensus 5 ~~~~l~elr~~l~~~~~~l~~~~~~~~~~~~d~~LlRFLra~~~dv~~A 53 (346)
+.+.++.|-+.++.. +.++..+... -+...++.+.+..+|++..+
T Consensus 2 S~~~l~~Fl~~~~~d-~~l~~~l~~~---~~~~e~~~lA~~~Gy~ft~~ 46 (49)
T PF07862_consen 2 SIESLKAFLEKVKSD-PELREQLKAC---QNPEEVVALAREAGYDFTEE 46 (49)
T ss_pred CHHHHHHHHHHHhcC-HHHHHHHHhc---CCHHHHHHHHHHcCCCCCHH
Confidence 456677777777654 3555544332 25678889999999887543
No 22
>PF08938 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This domain is found in various eukaryotic HBS1-like proteins. ; PDB: 1UFZ_A 3IZQ_1.
Probab=25.28 E-value=57 Score=23.99 Aligned_cols=25 Identities=28% Similarity=0.232 Sum_probs=20.6
Q ss_pred ChHHHHHHHhhcCCCHHHHHHHHHH
Q 019113 35 PTETLVRFLKARDGNVSKAHKMLMD 59 (346)
Q Consensus 35 ~d~~LlRFLra~~~dv~~A~~~l~~ 59 (346)
++..|..=|..+.|||++|+..|.+
T Consensus 45 ~e~~i~eal~~~~fDvekAl~~Ll~ 69 (79)
T PF08938_consen 45 PEEQIKEALWHYYFDVEKALDYLLS 69 (79)
T ss_dssp -CCHHHHHHHHTTT-CCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7778999999999999999998865
No 23
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=24.10 E-value=2.3e+02 Score=18.94 Aligned_cols=46 Identities=17% Similarity=0.189 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhcchhHHHHHhhcccCCChHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 019113 6 HEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLH 62 (346)
Q Consensus 6 ~~~l~elr~~l~~~~~~l~~~~~~~~~~~~d~~LlRFLra~~~dv~~A~~~l~~~l~ 62 (346)
+++++.|++.++..|..... .+.+-.+.....+.++|...++..++
T Consensus 14 ~~A~~~~~~~l~~~P~~~~a-----------~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 14 DEAIAAFEQALKQDPDNPEA-----------WYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHHHHCCSTTHHHH-----------HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56777777777776532221 14444555567789999988887764
No 24
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=22.78 E-value=1.4e+02 Score=28.46 Aligned_cols=19 Identities=37% Similarity=0.716 Sum_probs=17.1
Q ss_pred hccCccccCcEEEEcCChh
Q 019113 197 DLNYPEKTNTYYIVNVPYI 215 (346)
Q Consensus 197 ~~~YPerl~~i~ivNaP~~ 215 (346)
...||+|+.++..+|+|..
T Consensus 131 a~~~Perv~~lv~~nv~~~ 149 (322)
T KOG4178|consen 131 ALFYPERVDGLVTLNVPFP 149 (322)
T ss_pred HHhChhhcceEEEecCCCC
Confidence 3489999999999999988
No 25
>PRK09377 tsf elongation factor Ts; Provisional
Probab=22.03 E-value=2e+02 Score=26.98 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=33.5
Q ss_pred CCcchHHHHHHHHHHHhhcchhHHHHHhhcccCCChHHHHHHHhhcCCCHHHHHHHHHH
Q 019113 1 MVTVSHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMD 59 (346)
Q Consensus 1 ~~~~~~~~l~elr~~l~~~~~~l~~~~~~~~~~~~d~~LlRFLra~~~dv~~A~~~l~~ 59 (346)
|-.++.+.|++||+....- =..+-+=|...++|+++|.+-|++
T Consensus 1 m~~is~~~IK~LR~~Tgag----------------m~dCKkAL~e~~gD~ekAi~~Lrk 43 (290)
T PRK09377 1 MAAITAALVKELRERTGAG----------------MMDCKKALTEADGDIEKAIEWLRK 43 (290)
T ss_pred CCccCHHHHHHHHHHHCCC----------------HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5567889999999886542 125677788899999999998865
No 26
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=21.67 E-value=1.7e+02 Score=18.67 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=19.7
Q ss_pred CChHHHHHHHhhcCCCHHHHHHHH
Q 019113 34 YPTETLVRFLKARDGNVSKAHKML 57 (346)
Q Consensus 34 ~~d~~LlRFLra~~~dv~~A~~~l 57 (346)
.....|-.-|+.+++||-+|++.+
T Consensus 15 ~kr~~Le~iL~~C~GDvv~AIE~~ 38 (39)
T PF03474_consen 15 QKRSVLELILQRCNGDVVQAIEQF 38 (39)
T ss_pred CChHHHHHHHHHcCCcHHHHHHHh
Confidence 345578888999999999999875
No 27
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=20.17 E-value=1.4e+02 Score=24.18 Aligned_cols=50 Identities=14% Similarity=0.164 Sum_probs=34.2
Q ss_pred ceEEEEEeCCCCCCCCCchHHHHHHHHHhhhccCccccCcEEEEcCChhHHHHHHHHhhc
Q 019113 167 TTCVKVLDMTGLKLSALSQIKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPL 226 (346)
Q Consensus 167 ~~~v~I~Dl~g~~l~~~~~~~~~~~~~~i~~~~YPerl~~i~ivNaP~~f~~~~~lvkpf 226 (346)
++.+++.|+ |-+..+.. . ++..+ -++..+++..+|+|.+-.++-..+..-
T Consensus 60 dgVlvl~DL-Ggs~~n~e---~---a~~~l---~~~~~~~v~g~nlPlvega~~aa~~~~ 109 (125)
T TIGR02364 60 DGVLIFYDL-GSAVMNAE---M---AVELL---EDEDRDKVHLVDAPLVEGAFAAAVEAQ 109 (125)
T ss_pred CCEEEEEcC-CCcHhHHH---H---HHHHh---ccccccEEEEechhHHHHHHHHHHHHc
Confidence 578999999 66643321 1 22222 245568899999999999888877653
Done!