Query 019113
Match_columns 346
No_of_seqs 254 out of 1299
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 11:05:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019113.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019113hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1olm_A SEC14-like protein 2; l 100.0 6.4E-50 2.2E-54 389.1 23.0 278 2-316 9-298 (403)
2 3q8g_A CRAL-TRIO domain-contai 100.0 1.9E-49 6.7E-54 373.8 16.1 256 2-287 36-302 (320)
3 1aua_A Phosphatidylinositol tr 100.0 1.3E-48 4.6E-53 364.9 21.6 254 2-287 27-287 (296)
4 1r5l_A Alpha-TTP, protein (alp 100.0 1.1E-44 3.8E-49 332.3 17.4 227 2-267 5-233 (262)
5 3hx3_A Retinaldehyde-binding p 100.0 6E-44 2E-48 336.1 19.8 233 3-268 56-293 (316)
6 3pg7_A Neurofibromin; SEC lipi 99.2 1.3E-11 4.5E-16 111.8 6.6 122 118-255 22-144 (256)
7 3peg_A Neurofibromin; SEC14 do 99.0 6.8E-10 2.3E-14 102.1 6.8 124 116-255 39-163 (290)
8 1wgl_A TOLL-interacting protei 81.6 2.5 8.4E-05 28.6 4.7 41 4-59 8-48 (59)
9 1v92_A NSFL1 cofactor P47; 3-h 80.0 1.9 6.5E-05 27.2 3.6 24 34-57 18-41 (46)
10 1ufz_A Hypothetical protein BA 77.2 3.8 0.00013 29.5 4.7 29 32-60 47-75 (83)
11 2dam_A ETEA protein; KIAA0887, 72.7 4.6 0.00016 27.9 4.1 24 35-58 33-56 (67)
12 3e21_A HFAF1, FAS-associated f 70.4 8.3 0.00028 24.4 4.6 37 4-56 4-41 (45)
13 2dzl_A Protein FAM100B; UBA-li 69.8 5.5 0.00019 27.4 4.0 25 33-57 29-53 (66)
14 1z96_A DNA-damage, UBA-domain 66.7 6.9 0.00024 23.5 3.6 25 33-57 15-39 (40)
15 2knz_A Ubiquilin-4; cytoplasm, 60.6 28 0.00097 22.5 6.0 28 32-59 21-49 (53)
16 2dhy_A CUE domain-containing p 58.2 16 0.00056 25.1 4.6 27 33-59 31-57 (67)
17 2dal_A Protein KIAA0794; FAS a 57.9 32 0.0011 23.1 6.1 25 33-57 27-51 (62)
18 1ify_A HHR23A, UV excision rep 52.8 15 0.00052 23.4 3.5 28 32-59 18-45 (49)
19 2di0_A Activating signal coint 52.6 19 0.00064 25.2 4.1 27 33-59 26-52 (71)
20 2dah_A Ubiquilin-3; UBA domain 51.4 17 0.00057 23.9 3.6 28 33-60 20-48 (54)
21 1otr_A Protein CUE2; protein-p 51.2 34 0.0011 22.0 4.9 27 33-59 17-43 (49)
22 1vej_A Riken cDNA 4931431F19; 49.8 30 0.001 24.3 5.0 27 33-59 40-67 (74)
23 2jy5_A Ubiquilin-1; UBA, alter 48.7 17 0.00059 23.5 3.3 27 32-58 22-49 (52)
24 2g3q_A Protein YBL047C; endocy 48.4 18 0.00061 22.2 3.2 27 32-58 14-40 (43)
25 1wji_A Tudor domain containing 46.4 27 0.00091 23.6 4.1 29 32-60 19-47 (63)
26 2bwb_A Ubiquitin-like protein 43.8 22 0.00077 22.3 3.2 26 33-58 18-44 (46)
27 2cp9_A EF-TS, EF-TSMT, elongat 42.1 30 0.001 23.5 3.8 41 4-60 8-48 (64)
28 1wr1_B Ubiquitin-like protein 42.0 23 0.00079 23.6 3.2 27 33-59 28-55 (58)
29 1vg5_A RSGI RUH-014, rhomboid 41.0 24 0.00083 24.7 3.3 28 31-58 38-65 (73)
30 1veg_A NEDD8 ultimate buster-1 39.4 37 0.0013 24.4 4.1 29 32-60 39-67 (83)
31 2dna_A Unnamed protein product 38.7 37 0.0013 23.4 3.8 27 33-59 30-57 (67)
32 2dak_A Ubiquitin carboxyl-term 38.5 39 0.0013 22.6 4.0 29 33-61 20-48 (63)
33 2d9s_A CBL E3 ubiquitin protei 36.5 46 0.0016 21.7 3.8 31 30-60 17-47 (53)
34 1q02_A Sequestosome 1; helical 35.3 35 0.0012 22.2 3.0 22 37-58 27-48 (52)
35 2ooa_A E3 ubiquitin-protein li 35.2 59 0.002 21.1 4.1 31 30-60 19-49 (52)
36 1wiv_A UBP14, ubiquitin-specif 31.0 46 0.0016 23.2 3.4 27 33-59 40-66 (73)
37 3sbx_A Putative uncharacterize 29.7 86 0.0029 26.1 5.5 63 186-252 122-189 (189)
38 1oai_A Nuclear RNA export fact 29.6 70 0.0024 21.2 4.0 28 33-60 19-46 (59)
39 2cwb_A Chimera of immunoglobul 27.6 54 0.0019 24.8 3.5 28 32-59 76-104 (108)
40 2cp8_A NEXT to BRCA1 gene 1 pr 26.5 86 0.003 20.5 3.9 25 35-59 23-47 (54)
41 1vdl_A Ubiquitin carboxyl-term 25.2 95 0.0032 21.7 4.0 24 36-59 40-63 (80)
42 2oo3_A Protein involved in cat 23.2 36 0.0012 30.4 2.1 32 200-231 233-264 (283)
43 1whc_A RSGI RUH-027, UBA/UBX 3 23.2 96 0.0033 20.8 3.8 30 31-60 18-48 (64)
44 2dai_A Ubadc1, ubiquitin assoc 22.7 87 0.003 22.3 3.7 29 32-60 39-67 (83)
45 1wgn_A UBAP1, ubiquitin associ 21.5 86 0.0029 21.1 3.1 29 31-59 28-56 (63)
46 2oo9_A E3 ubiquitin-protein li 21.3 1.6E+02 0.0055 18.5 4.6 31 30-60 12-42 (46)
47 3qua_A Putative uncharacterize 21.2 1.5E+02 0.0052 24.8 5.5 63 186-252 131-198 (199)
48 1dv0_A DNA repair protein HHR2 21.1 82 0.0028 19.7 3.0 27 31-57 13-39 (47)
49 2cpw_A CBL-interacting protein 21.0 1E+02 0.0035 20.6 3.6 27 32-58 29-56 (64)
50 2juj_A E3 ubiquitin-protein li 20.8 1.9E+02 0.0063 19.0 4.7 31 29-59 14-44 (56)
51 3bq3_A Defective in cullin ned 20.0 1.1E+02 0.0037 27.1 4.5 27 33-59 27-53 (270)
No 1
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=6.4e-50 Score=389.13 Aligned_cols=278 Identities=26% Similarity=0.376 Sum_probs=236.0
Q ss_pred CcchHHHHHHHHHHHhhcchhHHHHHhhcccCCChHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhCchhhhhcCCCCCHH
Q 019113 2 VTVSHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTE 81 (346)
Q Consensus 2 ~~~~~~~l~elr~~l~~~~~~l~~~~~~~~~~~~d~~LlRFLra~~~dv~~A~~~l~~~l~wR~~~~id~i~~~~~~~~~ 81 (346)
.+.++++|+|||+++++....+ ...+|.+|+||||||+||+++|.+||+++++||+++++++++.. . +++
T Consensus 9 ~~~q~~~l~~lr~~l~~~~~~l--------~~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~-~-~~~ 78 (403)
T 1olm_A 9 SPRQKEALAKFRENVQDVLPAL--------PNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISW-Q-PPE 78 (403)
T ss_dssp CHHHHHHHHHHHHHHGGGGGGS--------SCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGS-C-CCH
T ss_pred CHHHHHHHHHHHHHHHhhccCC--------CCCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCccccc-C-CHH
Confidence 3567889999999999874222 15789999999999999999999999999999999999998862 2 223
Q ss_pred HHHHhhhhcccccccccccchhhhhhhhhcccCCCCCCeEEEEecCCCCcc----chhHHHHHHHHHHHHHHHhhhcchh
Q 019113 82 LYRAVRDSQLIGMSGYSREEHYIFSSILSQHCHLLQSLPVFAVGVGLSTFD----KASVHCYVQSHIQINEYRDRVILPS 157 (346)
Q Consensus 82 ~~~~l~~~~~~~~~G~d~~~~~f~~~~~~~~~~D~~GrPV~~~~~g~~~~~----~~~~~~~l~~~i~~~E~~~~~~l~~ 157 (346)
. +++..+.+++|+|++ ||||+++++|++|++ ..+.+++++++++++|...+. ++.
T Consensus 79 ~---~~~~~~~~~~g~Dk~-----------------GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~-~~~ 137 (403)
T 1olm_A 79 V---IQQYLSGGMCGYDLD-----------------GCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQE-CAH 137 (403)
T ss_dssp H---HHHHCCBEEEEECTT-----------------SCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHH-HHH
T ss_pred H---HHHhCCceeeccCCC-----------------cCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHH-HHh
Confidence 2 344456678888888 999999999999876 367899999999999988764 344
Q ss_pred hhhhcCCCcceEEEEEeCCCCCCCCCch--HHHHHHHHHhhhccCccccCcEEEEcCChhHHHHHHHHhhccchhcccce
Q 019113 158 ASAKHGRPITTCVKVLDMTGLKLSALSQ--IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKI 235 (346)
Q Consensus 158 ~~~~~~~~v~~~v~I~Dl~g~~l~~~~~--~~~~~~~~~i~~~~YPerl~~i~ivNaP~~f~~~~~lvkpfL~~~t~~KI 235 (346)
++...|.+++++++|+||+|+++++++. +++++.++.++|+|||||++++||||+|++|.++|+++||||+++|++||
T Consensus 138 ~s~~~g~~v~~~~~I~D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI 217 (403)
T 1olm_A 138 QTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKI 217 (403)
T ss_dssp HHHHHTSCCCCEEEEEECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTE
T ss_pred hHHhhCCcccceEEEEECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceE
Confidence 5556777899999999999999999864 56789999999999999999999999999999999999999999999999
Q ss_pred EEcCCCChhHHhccCCCCCCCccccCCCCCcccCC-CCCCCCC---CCCcchHHHHHHHhhccc-cc-cCcccccCCceE
Q 019113 236 QVLQGSGRDELLKIMDFESLPHFCRREDSGSSRSS-ENKNCFS---LDHPFHQQLYNYIKQQSL-IS-EPIQPVKQGSFH 309 (346)
Q Consensus 236 ~~~~~~~~~~L~~~i~~~~LP~~ygg~~GGt~~~~-~~~~c~~---~~~p~~~~~y~~i~~~~~-~~-~~~~~~~~~~~~ 309 (346)
+|+++++.++|.++||+++||++| ||++.++ +++.|.+ .||++|+++| ...+.. .. ++..+.+|+++.
T Consensus 218 ~~~~~~~~~~L~~~I~~~~LP~~y----GG~~~~~~~~~~c~~~i~~gg~vp~~~~--~~~~~~~~~~~~~~V~~g~~~~ 291 (403)
T 1olm_A 218 MVLGANWKEVLLKHISPDQVPVEY----GGTMTDPDGNPKCKSKINYGGDIPRKYY--VRDQVKQQYEHSVQISRGSSHQ 291 (403)
T ss_dssp EECCTTHHHHHTTTSCGGGSBGGG----TSSBCCTTCCTTCTTTCBCCCCCCGGGC--SCSSCCCCCSEEEEECTTCEEE
T ss_pred EEEChhHHHHHHhhcChhhCchhh----CCCcCCCCCCcccccccccCCCCCcccc--cCCCcccccceEEEEcCCCEEE
Confidence 999876678999999999999999 9999885 6888975 4899999999 655432 12 357888999999
Q ss_pred eeCCCCC
Q 019113 310 VDLPEPA 316 (346)
Q Consensus 310 ~~~~~~~ 316 (346)
|.+++..
T Consensus 292 v~~~v~~ 298 (403)
T 1olm_A 292 VEYEILF 298 (403)
T ss_dssp EEEEECS
T ss_pred EEEEEcC
Confidence 9988764
No 2
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=1.9e-49 Score=373.83 Aligned_cols=256 Identities=24% Similarity=0.384 Sum_probs=218.5
Q ss_pred CcchHHHHHHHHHHHhhcchhHHHHHhhcccCCChHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhCchhhhhcCCCCCHH
Q 019113 2 VTVSHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTE 81 (346)
Q Consensus 2 ~~~~~~~l~elr~~l~~~~~~l~~~~~~~~~~~~d~~LlRFLra~~~dv~~A~~~l~~~l~wR~~~~id~i~~~~~~~~~ 81 (346)
.+.++++|+|||+++++.+. ....||.+|+||||||+||+++|.+||+++++||+++++|+++.+...+.+
T Consensus 36 t~~q~~~l~~lR~~l~~~~~---------~~~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~ 106 (320)
T 3q8g_A 36 TKEQEEALLQFRSILLEKNY---------KERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKE 106 (320)
T ss_dssp CHHHHHHHHHHHHHHHHTTC---------CSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHHHhcCC---------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccc
Confidence 35578999999999998741 235789999999999999999999999999999999999988753111100
Q ss_pred ----HHHHhhhhcccccccccccchhhhhhhhhcccCCCCCCeEEEEecCCCCccc----hhHHHHHHHHHHHHHHHhhh
Q 019113 82 ----LYRAVRDSQLIGMSGYSREEHYIFSSILSQHCHLLQSLPVFAVGVGLSTFDK----ASVHCYVQSHIQINEYRDRV 153 (346)
Q Consensus 82 ----~~~~l~~~~~~~~~G~d~~~~~f~~~~~~~~~~D~~GrPV~~~~~g~~~~~~----~~~~~~l~~~i~~~E~~~~~ 153 (346)
....+.+.++.+++|+|++ ||||+|+++|++++++ .+.+++++++++.+|...+.
T Consensus 107 ~~~~e~~~~~~~~~~~~~g~Dk~-----------------GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~ 169 (320)
T 3q8g_A 107 AEDKERIKLAKMYPQYYHHVDKD-----------------GRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATY 169 (320)
T ss_dssp HHHHHHHHHHTTSCEEEEEECTT-----------------CCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHhCCceecCCCCC-----------------cCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHH
Confidence 1234556677888898888 9999999999998764 36788899999999988766
Q ss_pred cchhhhhhcCCCcceEEEEEeCCCCCCCCCch-HHHHHHHHHhhhccCccccCcEEEEcCChhHHHHHHHHhhccchhcc
Q 019113 154 ILPSASAKHGRPITTCVKVLDMTGLKLSALSQ-IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTR 232 (346)
Q Consensus 154 ~l~~~~~~~~~~v~~~v~I~Dl~g~~l~~~~~-~~~~~~~~~i~~~~YPerl~~i~ivNaP~~f~~~~~lvkpfL~~~t~ 232 (346)
.+++++...|..++++++|+||+|+++++++. +..++.++.++|++||||++++||||+|++|+++|+++||||+++|+
T Consensus 170 ~l~~~s~~~G~~ve~~~~IiD~~g~sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~ 249 (320)
T 3q8g_A 170 RVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTV 249 (320)
T ss_dssp HHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHH
T ss_pred hhhHHHHhcCCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHh
Confidence 66667777888899999999999999999875 56789999999999999999999999999999999999999999999
Q ss_pred cceEEcCCCChhHHhccCCCCCCCccccCCCCCcccCCC-CCCCCCC-CCcchHHHH
Q 019113 233 KKIQVLQGSGRDELLKIMDFESLPHFCRREDSGSSRSSE-NKNCFSL-DHPFHQQLY 287 (346)
Q Consensus 233 ~KI~~~~~~~~~~L~~~i~~~~LP~~ygg~~GGt~~~~~-~~~c~~~-~~p~~~~~y 287 (346)
+||+|+++++.++|.++||+++||++| ||++.++. .++|..+ -||+.+..|
T Consensus 250 ~KI~~~~~~~~~~L~~~i~~~~LP~~y----GG~~~~~~~~ggc~~~~~gpw~~~~~ 302 (320)
T 3q8g_A 250 SKIFILGSSYKKELLKQIPIENLPVKY----GGTSVLHNPNDKFYYSDIGPWRDPRY 302 (320)
T ss_dssp HTEEECCTTHHHHHHHHSCGGGSBGGG----TSCBCCSSTTSCGGGBCBSGGGCTTT
T ss_pred hhEEEeCCCcHHHHHhhCChhhCChhh----CCCCCCCCCCCCeecCCCCCCCChhh
Confidence 999999876678999999999999999 99999863 7788744 578887655
No 3
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=1.3e-48 Score=364.86 Aligned_cols=254 Identities=24% Similarity=0.388 Sum_probs=217.4
Q ss_pred CcchHHHHHHHHHHHhhcchhHHHHHhhcccCCChHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhCchhhhhcCCCCCHH
Q 019113 2 VTVSHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTE 81 (346)
Q Consensus 2 ~~~~~~~l~elr~~l~~~~~~l~~~~~~~~~~~~d~~LlRFLra~~~dv~~A~~~l~~~l~wR~~~~id~i~~~~~~~~~ 81 (346)
.+.++++|+|||+++++.+ .....||.+|+||||||+||+++|.+||+++++||+++++++++.+.. +.+
T Consensus 27 ~~~q~~~l~~lr~~l~~~~---------~~~~~dd~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~-~~~ 96 (296)
T 1aua_A 27 DSAQEKALAELRKLLEDAG---------FIERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFH-YDE 96 (296)
T ss_dssp CTTHHHHHHHHHHHHHHTT---------CCSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCC-CTT
T ss_pred CHHHHHHHHHHHHHHHhcC---------CCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccc-cCc
Confidence 4567899999999998864 134578999999999999999999999999999999999999876422 211
Q ss_pred HHHHhhhhcccccccccccchhhhhhhhhcccCCCCCCeEEEEecCCCCccc----hhHHHHHHHHHHHHHHHhhhcchh
Q 019113 82 LYRAVRDSQLIGMSGYSREEHYIFSSILSQHCHLLQSLPVFAVGVGLSTFDK----ASVHCYVQSHIQINEYRDRVILPS 157 (346)
Q Consensus 82 ~~~~l~~~~~~~~~G~d~~~~~f~~~~~~~~~~D~~GrPV~~~~~g~~~~~~----~~~~~~l~~~i~~~E~~~~~~l~~ 157 (346)
...+.+.++.+++|+|++ ||||+++++|+++++. .+.+++++++++.+|...+..++.
T Consensus 97 -~~~~~~~~~~~~~g~Dk~-----------------GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~ 158 (296)
T 1aua_A 97 -KPLIAKFYPQYYHKTDKD-----------------GRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPA 158 (296)
T ss_dssp -HHHHGGGSCCEEEEECTT-----------------SCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHH
T ss_pred -HHHHHHhCCceecccCCC-----------------CCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 134555566778888887 9999999999988754 478889999999999887766666
Q ss_pred hhhhcCCCcceEEEEEeCCCCCCCCCch-HHHHHHHHHhhhccCccccCcEEEEcCChhHHHHHHHHhhccchhcccceE
Q 019113 158 ASAKHGRPITTCVKVLDMTGLKLSALSQ-IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQ 236 (346)
Q Consensus 158 ~~~~~~~~v~~~v~I~Dl~g~~l~~~~~-~~~~~~~~~i~~~~YPerl~~i~ivNaP~~f~~~~~lvkpfL~~~t~~KI~ 236 (346)
++...|.+++++++|+||+|+++++++. +.+++.++.++|+|||||++++||||+|++|+++|+++||||+++|++||+
T Consensus 159 ~s~~~g~~v~~~~~I~D~~g~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~ 238 (296)
T 1aua_A 159 CSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIF 238 (296)
T ss_dssp HHHHHTSCCCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEE
T ss_pred HHHhcCCCceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEE
Confidence 6777788899999999999999999875 467899999999999999999999999999999999999999999999999
Q ss_pred EcCCCChhHHhccCCCCCCCccccCCCCCcccCCC-CCCCCCC-CCcchHHHH
Q 019113 237 VLQGSGRDELLKIMDFESLPHFCRREDSGSSRSSE-NKNCFSL-DHPFHQQLY 287 (346)
Q Consensus 237 ~~~~~~~~~L~~~i~~~~LP~~ygg~~GGt~~~~~-~~~c~~~-~~p~~~~~y 287 (346)
|+++++.++|.++||+++||++| ||++++++ .++|... .+|+.+.-|
T Consensus 239 ~~~~~~~~~L~~~i~~~~LP~~y----GG~~~~~~~~~g~~~~~~~~w~~~~~ 287 (296)
T 1aua_A 239 ILGSSYQKELLKQIPAENLPVKF----GGKSEVDESKGGLYLSDIGPWRDPKY 287 (296)
T ss_dssp ECCSCCHHHHTTTSCSSSSBGGG----TSCBCCCGGGCCSTTCCCSGGGCGGG
T ss_pred EeCcccHHHHHhhCCHhhCcHHh----CCCCCCCCCCCCceeCCCCCCCChhh
Confidence 99877789999999999999999 99998874 4567654 578877655
No 4
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=1.1e-44 Score=332.26 Aligned_cols=227 Identities=18% Similarity=0.262 Sum_probs=187.8
Q ss_pred CcchHHHHHHHHHHHhhcchhHHHHHhhcccCCChHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhCchhhhhcCCCCCHH
Q 019113 2 VTVSHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTE 81 (346)
Q Consensus 2 ~~~~~~~l~elr~~l~~~~~~l~~~~~~~~~~~~d~~LlRFLra~~~dv~~A~~~l~~~l~wR~~~~id~i~~~~~~~~~ 81 (346)
.+.++++|+|||+++++.+.++ .+...+|.+|+||||||+||+++|.+||+++++||++++ ++.. .+.+.+
T Consensus 5 s~~~~~~l~~lr~~l~~~~~~~------~~~~~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~--~i~~-~~~~~~ 75 (262)
T 1r5l_A 5 SPLLQPGLAALRRRAREAGVPL------APLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECP--EISA-DLHPRS 75 (262)
T ss_dssp ----CTTHHHHHHHHHHHTCCC------SSSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCH--HHHS-CCCGGG
T ss_pred cHHHHHHHHHHHHHHHhCCccc------CCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCh--Hhhh-cCChHH
Confidence 4567889999999999874211 134678999999999999999999999999999999996 3443 234445
Q ss_pred HHHHhhhhcccccccccccchhhhhhhhhcccCCCCCCeEEEEecCCCCccchhHHHHHHHHHHHHHHHhhhcchhhhhh
Q 019113 82 LYRAVRDSQLIGMSGYSREEHYIFSSILSQHCHLLQSLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAK 161 (346)
Q Consensus 82 ~~~~l~~~~~~~~~G~d~~~~~f~~~~~~~~~~D~~GrPV~~~~~g~~~~~~~~~~~~l~~~i~~~E~~~~~~l~~~~~~ 161 (346)
+.+.+......+++|+|++ ||||+++++|+++++..+..++++++++.+|..... .
T Consensus 76 ~~~~~~~g~~~~l~g~D~~-----------------GrpV~i~~~~~~d~~~~~~~~~~r~~~~~~E~~~~~----~--- 131 (262)
T 1r5l_A 76 IIGLLKAGYHGVLRSRDPT-----------------GSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQE----V--- 131 (262)
T ss_dssp THHHHHTTCEEECSSCCTT-----------------CCEEEEEEGGGCCTTTSCHHHHHHHHHHHHHHHTTS----H---
T ss_pred HHHHHHcCCccCCCCcCCC-----------------CCEEEEEeccccCcccCCHHHHHHHHHHHHHHHHhC----h---
Confidence 4444554445567788887 999999999999988778888899999888875421 1
Q ss_pred cCCCcceEEEEEeCCCCCCCCCch--HHHHHHHHHhhhccCccccCcEEEEcCChhHHHHHHHHhhccchhcccceEEcC
Q 019113 162 HGRPITTCVKVLDMTGLKLSALSQ--IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQ 239 (346)
Q Consensus 162 ~~~~v~~~v~I~Dl~g~~l~~~~~--~~~~~~~~~i~~~~YPerl~~i~ivNaP~~f~~~~~lvkpfL~~~t~~KI~~~~ 239 (346)
..++.|+++|+|++|+++++++. ++.++.++.++|++||||++++||||+|++|+++|+++||||+++|++||+|++
T Consensus 132 -~~~~~g~~~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~ 210 (262)
T 1r5l_A 132 -ETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHG 210 (262)
T ss_dssp -HHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECC
T ss_pred -hhcccceEEEEECCCCCHHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeC
Confidence 12357899999999999999853 578899999999999999999999999999999999999999999999999998
Q ss_pred CCChhHHhccCCCCCCCccccCCCCCcc
Q 019113 240 GSGRDELLKIMDFESLPHFCRREDSGSS 267 (346)
Q Consensus 240 ~~~~~~L~~~i~~~~LP~~ygg~~GGt~ 267 (346)
+++.++|.++|| ++||++| ||++
T Consensus 211 ~~~~~~L~~~i~-~~LP~~y----GG~~ 233 (262)
T 1r5l_A 211 NNYKQSLLQHFP-DILPLEY----GGEE 233 (262)
T ss_dssp SSCHHHHHHHST-TTSCGGG----TCSS
T ss_pred CCcHHHHHHHhh-hhCcHhh----CCCC
Confidence 777899999999 9999999 8886
No 5
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=6e-44 Score=336.14 Aligned_cols=233 Identities=16% Similarity=0.221 Sum_probs=192.8
Q ss_pred cchHHHHHHHHHHHhhcch---hHHHHHhhcccCCChHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhCchhhhhcCCCCC
Q 019113 3 TVSHEAVTQFQALMDQVDE---PLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVP 79 (346)
Q Consensus 3 ~~~~~~l~elr~~l~~~~~---~l~~~~~~~~~~~~d~~LlRFLra~~~dv~~A~~~l~~~l~wR~~~~id~i~~~~~~~ 79 (346)
+..+++|++||+|+++.+. .|+..++......||.+|+||||||+||+++|.+||+++++||++++ +++. .+.+
T Consensus 56 ~~~~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~--~~~~-~~~~ 132 (316)
T 3hx3_A 56 ETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYP--ELFD-SLSP 132 (316)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCG--GGTT-TCCH
T ss_pred HHHHHHHHHHHHHHHhCCCccccccccccccCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCc--hhhc-CCCH
Confidence 3567899999999988752 12211111124679999999999999999999999999999999997 4443 2444
Q ss_pred HHHHHHhhhhcccccccccccchhhhhhhhhcccCCCCCCeEEEEecCCCCccchhHHHHHHHHHHHHHHHhhhcchhhh
Q 019113 80 TELYRAVRDSQLIGMSGYSREEHYIFSSILSQHCHLLQSLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSAS 159 (346)
Q Consensus 80 ~~~~~~l~~~~~~~~~G~d~~~~~f~~~~~~~~~~D~~GrPV~~~~~g~~~~~~~~~~~~l~~~i~~~E~~~~~~l~~~~ 159 (346)
+++...+..+.+.+++|+|++ ||||+++++|++++++.+.+++++++++++|.....
T Consensus 133 ~~i~~~l~~g~~~~l~g~Dk~-----------------GrpVii~r~g~~d~~~~~~~~~~r~~~~~lE~~l~~------ 189 (316)
T 3hx3_A 133 EAVRCTIEAGYPGVLSSRDKY-----------------GRVVMLFNIENWQSQEITFDEILQAYCFILEKLLEN------ 189 (316)
T ss_dssp HHHHHHHHTTSSEECSSCCTT-----------------SCEEEEEECTTCCTTTSCHHHHHHHHHHHHHHHTTS------
T ss_pred HHHHHHHHcCCccccCCCCCC-----------------CCEEEEEecccCCCCCCCHHHHHHHHHHHHHHHHhc------
Confidence 555444555556677888887 999999999999998888999999999999976421
Q ss_pred hhcCCCcceEEEEEeCCCCCCCCCch--HHHHHHHHHhhhccCccccCcEEEEcCChhHHHHHHHHhhccchhcccceEE
Q 019113 160 AKHGRPITTCVKVLDMTGLKLSALSQ--IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQV 237 (346)
Q Consensus 160 ~~~~~~v~~~v~I~Dl~g~~l~~~~~--~~~~~~~~~i~~~~YPerl~~i~ivNaP~~f~~~~~lvkpfL~~~t~~KI~~ 237 (346)
.+.+++|+++|+||+|++++|++. ...++.++.++|++||+|++++||||+|++|.++|+++||||+++|++||+|
T Consensus 190 --~~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~ 267 (316)
T 3hx3_A 190 --EETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFV 267 (316)
T ss_dssp --HHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEE
T ss_pred --ccCCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEE
Confidence 123678999999999999998753 4678999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHhccCCCCCCCccccCCCCCccc
Q 019113 238 LQGSGRDELLKIMDFESLPHFCRREDSGSSR 268 (346)
Q Consensus 238 ~~~~~~~~L~~~i~~~~LP~~ygg~~GGt~~ 268 (346)
++++ .++|.++||+++||++| ||++.
T Consensus 268 ~~~~-~~~L~~~I~~~~LP~ey----GG~~~ 293 (316)
T 3hx3_A 268 HGDD-LSGFYQEIDENILPSDF----GGTLP 293 (316)
T ss_dssp EETC-CHHHHHHSCGGGSBGGG----TSSBC
T ss_pred eCCC-HHHHHhhCCHhhCcHhh----CCCCC
Confidence 8653 57999999999999999 99974
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.21 E-value=1.3e-11 Score=111.84 Aligned_cols=122 Identities=13% Similarity=0.018 Sum_probs=100.6
Q ss_pred CCeEEEEecCCCCccchhHHHHHHHHHHHHHHHhhhcchhhhhhcCCCcceEEEEEeCCCCCCCCCchHHHHHHHHHhhh
Q 019113 118 SLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQIKLLTIISTVDD 197 (346)
Q Consensus 118 GrPV~~~~~g~~~~~~~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~v~~~v~I~Dl~g~~l~~~~~~~~~~~~~~i~~ 197 (346)
||||+++...+++....+.+.++.+.+..++..+ -...++|+|++|++..+.+..+.++.+.+++.
T Consensus 22 GrpViv~~~~~l~~~~~D~e~Ll~~vl~tl~~~~--------------~~~y~lV~d~T~~~~~n~p~~~wl~~~~~llp 87 (256)
T 3pg7_A 22 GNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYY--------------AKPYEIVVDLTHTGPSNRFKTDFLSKWFVVFP 87 (256)
T ss_dssp SCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTT--------------TSCEEEEEECTTCCGGGCCCHHHHHHTTTSSC
T ss_pred CCEEEEEEeecCCCCCCCHHHHHHHHHHHHHHhc--------------CCCeEEEEECCCCCcccCCcHHHHHHHHHHcC
Confidence 9999999999988766677777766554444221 13678999999999988877889999999999
Q ss_pred ccCccccCcEEEEcCChhHHHHHHHH-hhccchhcccceEEcCCCChhHHhccCCCCCC
Q 019113 198 LNYPEKTNTYYIVNVPYIFSACWKVV-KPLLQERTRKKIQVLQGSGRDELLKIMDFESL 255 (346)
Q Consensus 198 ~~YPerl~~i~ivNaP~~f~~~~~lv-kpfL~~~t~~KI~~~~~~~~~~L~~~i~~~~L 255 (346)
..|...++++||+|++++|...|+.+ ++|.+.+..+|++++++ .++|.++|+.++|
T Consensus 88 ~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s--l~eL~~~i~~~~L 144 (256)
T 3pg7_A 88 GFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQ 144 (256)
T ss_dssp HHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS--TTGGGGTSCGGGC
T ss_pred HHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC--HHHHHhhcCHHHc
Confidence 99999999999999999999777664 56666688899999874 8999999987766
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.96 E-value=6.8e-10 Score=102.12 Aligned_cols=124 Identities=12% Similarity=-0.005 Sum_probs=92.7
Q ss_pred CCCCeEEEEecCCCCccchhHHHHHHHHHHHHHHHhhhcchhhhhhcCCCcceEEEEEeCCCCCCCCCchHHHHHHHHHh
Q 019113 116 LQSLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQIKLLTIISTV 195 (346)
Q Consensus 116 ~~GrPV~~~~~g~~~~~~~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~v~~~v~I~Dl~g~~l~~~~~~~~~~~~~~i 195 (346)
++|+||+++..++++....+.+.++.+.+..++..+ -...++|+|+++++..+-+..++++.+.++
T Consensus 39 ~dG~PViv~~~~~~~~~~~D~e~Lly~il~tl~~~~--------------~~~y~lV~D~T~~~~~n~p~~~~l~~~~~l 104 (290)
T 3peg_A 39 KAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYY--------------AKPYEIVVDLTHTGPSNRFKTDFLSKWFVV 104 (290)
T ss_dssp TTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTT--------------TSCEEEEEECTTCCGGGCCCHHHHGGGGTS
T ss_pred CCCCEEEEEEeecCCccCCCHHHHHHHHHHHHHHhc--------------CCCeEEEEEcCCCCccCCChHHHHHHHHHH
Confidence 339999999999998766677777766554443221 136889999999999877778899999999
Q ss_pred hhccCccccCcEEEEcCChhHHHHH-HHHhhccchhcccceEEcCCCChhHHhccCCCCCC
Q 019113 196 DDLNYPEKTNTYYIVNVPYIFSACW-KVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESL 255 (346)
Q Consensus 196 ~~~~YPerl~~i~ivNaP~~f~~~~-~lvkpfL~~~t~~KI~~~~~~~~~~L~~~i~~~~L 255 (346)
+...|+..++++||+|+|.+|...+ ...++|.+.+..+|+.++.. ...|..+++++++
T Consensus 105 lp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~--~~~L~~~i~~~~~ 163 (290)
T 3peg_A 105 FPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQ 163 (290)
T ss_dssp SCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESS--SCC----------
T ss_pred CCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCC--HHHHHhhCCHHHh
Confidence 9999999999999999999999865 46688888899999998764 4558899988754
No 8
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=81.65 E-value=2.5 Score=28.57 Aligned_cols=41 Identities=24% Similarity=0.354 Sum_probs=30.8
Q ss_pred chHHHHHHHHHHHhhcchhHHHHHhhcccCCChHHHHHHHhhcCCCHHHHHHHHHH
Q 019113 4 VSHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMD 59 (346)
Q Consensus 4 ~~~~~l~elr~~l~~~~~~l~~~~~~~~~~~~d~~LlRFLra~~~dv~~A~~~l~~ 59 (346)
..++++++|++..- +.+...+-.-|++++.|++.|+.+|-+
T Consensus 8 ~~ee~l~~L~emFP---------------~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 8 CSEEDLKAIQDMFP---------------NMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp SCHHHHHHHHHHCS---------------SSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCC---------------CCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 45566666655433 456778999999999999999999854
No 9
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=79.96 E-value=1.9 Score=27.18 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=20.6
Q ss_pred CChHHHHHHHhhcCCCHHHHHHHH
Q 019113 34 YPTETLVRFLKARDGNVSKAHKML 57 (346)
Q Consensus 34 ~~d~~LlRFLra~~~dv~~A~~~l 57 (346)
.+......||.+.+||++.|+..+
T Consensus 18 ~~~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 18 AEEDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp CCHHHHHHHHHHTTSCSHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCHHHHHHHH
Confidence 456688999999999999998765
No 10
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=77.23 E-value=3.8 Score=29.54 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=24.6
Q ss_pred cCCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 019113 32 RGYPTETLVRFLKARDGNVSKAHKMLMDC 60 (346)
Q Consensus 32 ~~~~d~~LlRFLra~~~dv~~A~~~l~~~ 60 (346)
+.+++..|.+-.-..+||+++|+..+-+.
T Consensus 47 dsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 47 DAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp TTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 45788899999999999999999988653
No 11
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.65 E-value=4.6 Score=27.94 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=20.1
Q ss_pred ChHHHHHHHhhcCCCHHHHHHHHH
Q 019113 35 PTETLVRFLKARDGNVSKAHKMLM 58 (346)
Q Consensus 35 ~d~~LlRFLra~~~dv~~A~~~l~ 58 (346)
+......||...+||++.|+..+-
T Consensus 33 d~~~A~~~Le~~~WnLe~Av~~ff 56 (67)
T 2dam_A 33 SMDQCRHTLEQHNWNIEAAVQDRL 56 (67)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 445788999999999999988764
No 12
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=70.44 E-value=8.3 Score=24.42 Aligned_cols=37 Identities=14% Similarity=0.156 Sum_probs=26.5
Q ss_pred chHHHHHHHHHHHhhcchhHHHHHhhcccCCCh-HHHHHHHhhcCCCHHHHHHH
Q 019113 4 VSHEAVTQFQALMDQVDEPLKITFQNIHRGYPT-ETLVRFLKARDGNVSKAHKM 56 (346)
Q Consensus 4 ~~~~~l~elr~~l~~~~~~l~~~~~~~~~~~~d-~~LlRFLra~~~dv~~A~~~ 56 (346)
.+.+.|.+|...-. .+| .....||.+++||++.|+..
T Consensus 4 d~de~ia~F~~iTG----------------~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 4 DREMILADFQACTG----------------IENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp CHHHHHHHHHHHHC----------------CCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred cHHHHHHHHHHHHC----------------CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 35566666665433 344 57888999999999999753
No 13
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.78 E-value=5.5 Score=27.43 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=21.2
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHH
Q 019113 33 GYPTETLVRFLKARDGNVSKAHKML 57 (346)
Q Consensus 33 ~~~d~~LlRFLra~~~dv~~A~~~l 57 (346)
+.++.....||.+.+||++.|+..+
T Consensus 29 g~~~~~A~~~Le~~~WdLe~Al~~f 53 (66)
T 2dzl_A 29 GCAADQAKQLLQAAHWQFETALSTF 53 (66)
T ss_dssp CCCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3566688999999999999998775
No 14
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=66.68 E-value=6.9 Score=23.52 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=21.6
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHH
Q 019113 33 GYPTETLVRFLKARDGNVSKAHKML 57 (346)
Q Consensus 33 ~~~d~~LlRFLra~~~dv~~A~~~l 57 (346)
+++.....+-|+++++|++.|...|
T Consensus 15 Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 15 GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5777788999999999999998765
No 15
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=60.59 E-value=28 Score=22.51 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=24.0
Q ss_pred cCC-ChHHHHHHHhhcCCCHHHHHHHHHH
Q 019113 32 RGY-PTETLVRFLKARDGNVSKAHKMLMD 59 (346)
Q Consensus 32 ~~~-~d~~LlRFLra~~~dv~~A~~~l~~ 59 (346)
-++ +..-.++-|++.++|+++|++.|..
T Consensus 21 MGF~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 21 MGFINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp TTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 467 7778899999999999999998754
No 16
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.24 E-value=16 Score=25.14 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=23.3
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHH
Q 019113 33 GYPTETLVRFLKARDGNVSKAHKMLMD 59 (346)
Q Consensus 33 ~~~d~~LlRFLra~~~dv~~A~~~l~~ 59 (346)
..+...+..-|+++++|++.|++.|..
T Consensus 31 ~lD~~vI~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 31 NMDYDIIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp SSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 467778999999999999999998754
No 17
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.89 E-value=32 Score=23.07 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.3
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHH
Q 019113 33 GYPTETLVRFLKARDGNVSKAHKML 57 (346)
Q Consensus 33 ~~~d~~LlRFLra~~~dv~~A~~~l 57 (346)
+.+......||.+.+||++.|+..+
T Consensus 27 g~~~~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 27 GASESVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp CCCHHHHHHHHHTTTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3457788999999999999999776
No 18
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=52.79 E-value=15 Score=23.45 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=24.5
Q ss_pred cCCChHHHHHHHhhcCCCHHHHHHHHHH
Q 019113 32 RGYPTETLVRFLKARDGNVSKAHKMLMD 59 (346)
Q Consensus 32 ~~~~d~~LlRFLra~~~dv~~A~~~l~~ 59 (346)
-+++.....+=|++.++|+++|.+.|-.
T Consensus 18 MGF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 18 MGYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp TTCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4688889999999999999999988754
No 19
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=52.57 E-value=19 Score=25.17 Aligned_cols=27 Identities=4% Similarity=0.041 Sum_probs=23.9
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHH
Q 019113 33 GYPTETLVRFLKARDGNVSKAHKMLMD 59 (346)
Q Consensus 33 ~~~d~~LlRFLra~~~dv~~A~~~l~~ 59 (346)
++.+.++.+.|..++.|++.+...|-+
T Consensus 26 dLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 26 DLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp SSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 577889999999999999999988754
No 20
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=51.38 E-value=17 Score=23.87 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=22.8
Q ss_pred CCChH-HHHHHHhhcCCCHHHHHHHHHHH
Q 019113 33 GYPTE-TLVRFLKARDGNVSKAHKMLMDC 60 (346)
Q Consensus 33 ~~~d~-~LlRFLra~~~dv~~A~~~l~~~ 60 (346)
+++|. -.++-|++.++|+++|++.|-..
T Consensus 20 GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 20 GFLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp TCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 57554 46999999999999999988653
No 21
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=51.16 E-value=34 Score=21.97 Aligned_cols=27 Identities=11% Similarity=0.195 Sum_probs=23.1
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHH
Q 019113 33 GYPTETLVRFLKARDGNVSKAHKMLMD 59 (346)
Q Consensus 33 ~~~d~~LlRFLra~~~dv~~A~~~l~~ 59 (346)
..+...+.+-|+++++|+++|..+|-+
T Consensus 17 ~~~~~~ik~~L~~~~Gd~d~Ai~~LL~ 43 (49)
T 1otr_A 17 AISKSKLQVHLLENNNDLDLTIGLLLK 43 (49)
T ss_dssp SSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 456678888999999999999999865
No 22
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=49.77 E-value=30 Score=24.26 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=22.2
Q ss_pred CC-ChHHHHHHHhhcCCCHHHHHHHHHH
Q 019113 33 GY-PTETLVRFLKARDGNVSKAHKMLMD 59 (346)
Q Consensus 33 ~~-~d~~LlRFLra~~~dv~~A~~~l~~ 59 (346)
++ ++.-.++=|++.++|+++|++.|..
T Consensus 40 GF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 40 GFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 55 4567799999999999999988753
No 23
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=48.66 E-value=17 Score=23.51 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=22.6
Q ss_pred cCC-ChHHHHHHHhhcCCCHHHHHHHHH
Q 019113 32 RGY-PTETLVRFLKARDGNVSKAHKMLM 58 (346)
Q Consensus 32 ~~~-~d~~LlRFLra~~~dv~~A~~~l~ 58 (346)
-++ +..-.++=|++.++|+++|++.|.
T Consensus 22 MGF~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 22 MGFLNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp TTCCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 367 777789999999999999998774
No 24
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=48.43 E-value=18 Score=22.21 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=23.0
Q ss_pred cCCChHHHHHHHhhcCCCHHHHHHHHH
Q 019113 32 RGYPTETLVRFLKARDGNVSKAHKMLM 58 (346)
Q Consensus 32 ~~~~d~~LlRFLra~~~dv~~A~~~l~ 58 (346)
-+++.....+=|+++++|++.|...|-
T Consensus 14 MGF~~~~a~~AL~~~~~n~e~A~~~L~ 40 (43)
T 2g3q_A 14 MGFTEEEAHNALEKCNWDLEAATNFLL 40 (43)
T ss_dssp TTSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhCcCHHHHHHHHH
Confidence 368888889999999999999988764
No 25
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=46.37 E-value=27 Score=23.63 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=24.2
Q ss_pred cCCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 019113 32 RGYPTETLVRFLKARDGNVSKAHKMLMDC 60 (346)
Q Consensus 32 ~~~~d~~LlRFLra~~~dv~~A~~~l~~~ 60 (346)
-+++.....+=|+++++|+++|.+.|..+
T Consensus 19 MGF~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 19 MGFSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp TTCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 46888888999999999999998887654
No 26
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=43.76 E-value=22 Score=22.34 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=21.5
Q ss_pred CCC-hHHHHHHHhhcCCCHHHHHHHHH
Q 019113 33 GYP-TETLVRFLKARDGNVSKAHKMLM 58 (346)
Q Consensus 33 ~~~-d~~LlRFLra~~~dv~~A~~~l~ 58 (346)
++. +...++=|++.++|+++|++.|-
T Consensus 18 GF~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 18 GFFDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp TCCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 564 45679999999999999998774
No 27
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=42.07 E-value=30 Score=23.55 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHhhcchhHHHHHhhcccCCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 019113 4 VSHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDC 60 (346)
Q Consensus 4 ~~~~~l~elr~~l~~~~~~l~~~~~~~~~~~~d~~LlRFLra~~~dv~~A~~~l~~~ 60 (346)
++.+.|++||+.... .-..+-+-|...++|+++|+..|++-
T Consensus 8 it~~~Vk~LRe~TGa----------------g~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 8 SSKELLMKLRRKTGY----------------SFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp CCCHHHHHHHHHHCC----------------CHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCC----------------CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 455667777776433 23466778889999999999999753
No 28
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=41.97 E-value=23 Score=23.58 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=22.3
Q ss_pred CC-ChHHHHHHHhhcCCCHHHHHHHHHH
Q 019113 33 GY-PTETLVRFLKARDGNVSKAHKMLMD 59 (346)
Q Consensus 33 ~~-~d~~LlRFLra~~~dv~~A~~~l~~ 59 (346)
++ ++...++=|++.++|+++|++.|..
T Consensus 28 GF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 28 GFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 55 4556799999999999999998864
No 29
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=40.97 E-value=24 Score=24.70 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=22.3
Q ss_pred ccCCChHHHHHHHhhcCCCHHHHHHHHH
Q 019113 31 HRGYPTETLVRFLKARDGNVSKAHKMLM 58 (346)
Q Consensus 31 ~~~~~d~~LlRFLra~~~dv~~A~~~l~ 58 (346)
.-+++.....+=|++.++|+++|.+.|.
T Consensus 38 eMGF~r~~a~~AL~~~~~nve~Ave~Ll 65 (73)
T 1vg5_A 38 AMGFDRTQVEVALAAADDDLTVAVEILM 65 (73)
T ss_dssp TTTCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3467888888888888899988887764
No 30
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=39.38 E-value=37 Score=24.40 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=24.2
Q ss_pred cCCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 019113 32 RGYPTETLVRFLKARDGNVSKAHKMLMDC 60 (346)
Q Consensus 32 ~~~~d~~LlRFLra~~~dv~~A~~~l~~~ 60 (346)
-+++.....+-|++.++|+++|.+.|-.+
T Consensus 39 MGF~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 39 MGFDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp HSCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 36788888999999999999998887654
No 31
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=38.69 E-value=37 Score=23.37 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=22.0
Q ss_pred CCC-hHHHHHHHhhcCCCHHHHHHHHHH
Q 019113 33 GYP-TETLVRFLKARDGNVSKAHKMLMD 59 (346)
Q Consensus 33 ~~~-d~~LlRFLra~~~dv~~A~~~l~~ 59 (346)
++. +...++-|++.+.|+++|++.|..
T Consensus 30 GF~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 30 GFVNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp TCCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 554 445699999999999999998854
No 32
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.50 E-value=39 Score=22.63 Aligned_cols=29 Identities=14% Similarity=0.449 Sum_probs=24.4
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHHHH
Q 019113 33 GYPTETLVRFLKARDGNVSKAHKMLMDCL 61 (346)
Q Consensus 33 ~~~d~~LlRFLra~~~dv~~A~~~l~~~l 61 (346)
+++.....+=|++.++|++.|.+-|-.+.
T Consensus 20 GF~~~~a~~AL~~t~~nve~A~e~L~~~~ 48 (63)
T 2dak_A 20 GFSRDQALKALRATNNSLERAVDWIFSHI 48 (63)
T ss_dssp TCCHHHHHHHHHHTTSCSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 67788889999999999999998887653
No 33
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=36.47 E-value=46 Score=21.73 Aligned_cols=31 Identities=19% Similarity=0.410 Sum_probs=27.2
Q ss_pred cccCCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 019113 30 IHRGYPTETLVRFLKARDGNVSKAHKMLMDC 60 (346)
Q Consensus 30 ~~~~~~d~~LlRFLra~~~dv~~A~~~l~~~ 60 (346)
+..+++.....|=|...++|++.|...|++.
T Consensus 17 ~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 17 MSQGYSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp HHHTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 4458999999999999999999999998754
No 34
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=35.30 E-value=35 Score=22.17 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=20.1
Q ss_pred HHHHHHHhhcCCCHHHHHHHHH
Q 019113 37 ETLVRFLKARDGNVSKAHKMLM 58 (346)
Q Consensus 37 ~~LlRFLra~~~dv~~A~~~l~ 58 (346)
.+|-|.|.+.++|+.+|++.|.
T Consensus 27 GWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 27 GWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp SHHHHHHHHTTTCHHHHHHHHT
T ss_pred cHHHHHHHHccCCHHHHHHHhh
Confidence 5999999999999999998874
No 35
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=35.21 E-value=59 Score=21.09 Aligned_cols=31 Identities=29% Similarity=0.438 Sum_probs=27.5
Q ss_pred cccCCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 019113 30 IHRGYPTETLVRFLKARDGNVSKAHKMLMDC 60 (346)
Q Consensus 30 ~~~~~~d~~LlRFLra~~~dv~~A~~~l~~~ 60 (346)
+..+++....++=|+..++|++.|...|.+.
T Consensus 19 m~mGFsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 19 MGEGYAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp HHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 4568999999999999999999999988764
No 36
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=31.02 E-value=46 Score=23.15 Aligned_cols=27 Identities=26% Similarity=0.542 Sum_probs=21.0
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHH
Q 019113 33 GYPTETLVRFLKARDGNVSKAHKMLMD 59 (346)
Q Consensus 33 ~~~d~~LlRFLra~~~dv~~A~~~l~~ 59 (346)
+++.....+=|+++++|+++|.+-|-.
T Consensus 40 GF~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 40 GFAEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 577777888888888888888877643
No 37
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=29.67 E-value=86 Score=26.09 Aligned_cols=63 Identities=11% Similarity=0.072 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhhccCccccCcEEEEcCChhHHHHHHHHh-----hccchhcccceEEcCCCChhHHhccCCC
Q 019113 186 IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVK-----PLLQERTRKKIQVLQGSGRDELLKIMDF 252 (346)
Q Consensus 186 ~~~~~~~~~i~~~~YPerl~~i~ivNaP~~f~~~~~lvk-----pfL~~~t~~KI~~~~~~~~~~L~~~i~~ 252 (346)
++-+..+++..|-.+- -+-++++|..-++..++.+++ -|++++.++.+.+.. +.+++.+++.|
T Consensus 122 LdElfe~lt~~qlg~~--~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d--~~ee~~~~l~~ 189 (189)
T 3sbx_A 122 LDELLDVWTEGYLGMH--DKSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVVD--NLDDALQACAP 189 (189)
T ss_dssp HHHHHHHHHHHHTTSC--CCCEEEECTTCTTHHHHHHHHHHHHTTSSCHHHHHHEEEES--SHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccc--CCCEEEecCCccchHHHHHHHHHHHCCCCCHHHcCeEEEeC--CHHHHHHHhcC
Confidence 3334444444454442 267899999767777766543 589999999999976 48888888764
No 38
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=29.63 E-value=70 Score=21.22 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=24.2
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 019113 33 GYPTETLVRFLKARDGNVSKAHKMLMDC 60 (346)
Q Consensus 33 ~~~d~~LlRFLra~~~dv~~A~~~l~~~ 60 (346)
+..-.+-.+.|...+||.++|.+.+.+-
T Consensus 19 gmn~~~s~~cL~~~~Wd~~~A~~~F~~l 46 (59)
T 1oai_A 19 GMNLEWSQKCLQDNNWDYTRSAQAFTHL 46 (59)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5667799999999999999999987653
No 39
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=27.55 E-value=54 Score=24.77 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=23.1
Q ss_pred cCCCh-HHHHHHHhhcCCCHHHHHHHHHH
Q 019113 32 RGYPT-ETLVRFLKARDGNVSKAHKMLMD 59 (346)
Q Consensus 32 ~~~~d-~~LlRFLra~~~dv~~A~~~l~~ 59 (346)
-++.| ...++=|++.++|+++|++.|.+
T Consensus 76 MGF~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 76 MGIQDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp TTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 45644 68899999999999999998854
No 40
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.54 E-value=86 Score=20.49 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=21.3
Q ss_pred ChHHHHHHHhhcCCCHHHHHHHHHH
Q 019113 35 PTETLVRFLKARDGNVSKAHKMLMD 59 (346)
Q Consensus 35 ~d~~LlRFLra~~~dv~~A~~~l~~ 59 (346)
|...=.+-|+..++|+++|+..|..
T Consensus 23 D~~~N~~aL~~~~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 23 DRQLNLRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp CHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5667789999999999999988754
No 41
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.18 E-value=95 Score=21.73 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=20.4
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHH
Q 019113 36 TETLVRFLKARDGNVSKAHKMLMD 59 (346)
Q Consensus 36 d~~LlRFLra~~~dv~~A~~~l~~ 59 (346)
-.+|.--|.|.+.|+..|+.+|.+
T Consensus 40 ~~~L~~ALkas~Gdl~~AV~~LT~ 63 (80)
T 1vdl_A 40 AQILQQALKDSNGNLELAVAFLTA 63 (80)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCHHHHHHHHhc
Confidence 357888999999999999998853
No 42
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=23.24 E-value=36 Score=30.44 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=25.6
Q ss_pred CccccCcEEEEcCChhHHHHHHHHhhccchhc
Q 019113 200 YPEKTNTYYIVNVPYIFSACWKVVKPLLQERT 231 (346)
Q Consensus 200 YPerl~~i~ivNaP~~f~~~~~lvkpfL~~~t 231 (346)
....=..++|||+||-+....+-+-|+|.+..
T Consensus 233 ~gm~gsGm~viNpP~~l~~~~~~~l~~l~~~l 264 (283)
T 2oo3_A 233 EGMTGCGLWIINPPYTFPSEIKLVLETLTTYF 264 (283)
T ss_dssp CSCCEEEEEEESCCTTHHHHHHHHHHHHHHHS
T ss_pred CCcCceeEEEECCchhHHHHHHHHHHHHHHHh
Confidence 33444789999999999999998888887744
No 43
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=23.19 E-value=96 Score=20.79 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=23.8
Q ss_pred ccCCChHHHHHHHhhc-CCCHHHHHHHHHHH
Q 019113 31 HRGYPTETLVRFLKAR-DGNVSKAHKMLMDC 60 (346)
Q Consensus 31 ~~~~~d~~LlRFLra~-~~dv~~A~~~l~~~ 60 (346)
.-+++.....+=|++. ++|++.|.+-|-.+
T Consensus 18 ~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 18 EMGFPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp TTTCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 3467888888899998 68999988877654
No 44
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.74 E-value=87 Score=22.32 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=22.1
Q ss_pred cCCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 019113 32 RGYPTETLVRFLKARDGNVSKAHKMLMDC 60 (346)
Q Consensus 32 ~~~~d~~LlRFLra~~~dv~~A~~~l~~~ 60 (346)
-+++..-..+=|++.++|++.|.+-|-.+
T Consensus 39 MGF~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 39 MGFPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp HTCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 36777788888888888888888777543
No 45
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.46 E-value=86 Score=21.13 Aligned_cols=29 Identities=24% Similarity=0.468 Sum_probs=23.8
Q ss_pred ccCCChHHHHHHHhhcCCCHHHHHHHHHH
Q 019113 31 HRGYPTETLVRFLKARDGNVSKAHKMLMD 59 (346)
Q Consensus 31 ~~~~~d~~LlRFLra~~~dv~~A~~~l~~ 59 (346)
.-++++....|=|++.+.|+++|.+=|-.
T Consensus 28 sMGFs~~qA~kALKat~~NvErAaDWLFS 56 (63)
T 1wgn_A 28 NMGYSYECVLRAMKKKGENIEQILDYLFA 56 (63)
T ss_dssp HHHCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34688889999999999999999876543
No 46
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=21.34 E-value=1.6e+02 Score=18.48 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=27.0
Q ss_pred cccCCChHHHHHHHhhcCCCHHHHHHHHHHH
Q 019113 30 IHRGYPTETLVRFLKARDGNVSKAHKMLMDC 60 (346)
Q Consensus 30 ~~~~~~d~~LlRFLra~~~dv~~A~~~l~~~ 60 (346)
+..+|+.....|=|-....|++.|...|.+.
T Consensus 12 ~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 12 MSQGYSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp HHTTBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 4568999999999999999999999998754
No 47
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=21.15 E-value=1.5e+02 Score=24.76 Aligned_cols=63 Identities=8% Similarity=0.062 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhhccCccccCcEEEEcCChhHHHHHHHHh-----hccchhcccceEEcCCCChhHHhccCCC
Q 019113 186 IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVK-----PLLQERTRKKIQVLQGSGRDELLKIMDF 252 (346)
Q Consensus 186 ~~~~~~~~~i~~~~YPerl~~i~ivNaP~~f~~~~~lvk-----pfL~~~t~~KI~~~~~~~~~~L~~~i~~ 252 (346)
++-+..+++..|-.+. -+-++++|..-++..++.+++ -|++++.++.+.+.. +.+++.+++.+
T Consensus 131 ldEl~e~lt~~qlg~~--~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d--~~~e~~~~l~~ 198 (199)
T 3qua_A 131 LEEFFEAWTAGYLGMH--DKPLILLDPFGHYDGLLTWLRGLVPTGYVSQRAMDSLVVVD--NVEAALEACAP 198 (199)
T ss_dssp HHHHHHHHHHHHTTSC--CCCEEEECTTSTTHHHHHHHHHTTTTTSSCHHHHHTSEEES--SHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhccC--CCCEEEEcCCccchHHHHHHHHHHHCCCCCHHHCCeEEEeC--CHHHHHHHHhc
Confidence 3444455555555543 257999998777777777654 478888889999876 48888887764
No 48
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=21.10 E-value=82 Score=19.70 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=23.0
Q ss_pred ccCCChHHHHHHHhhcCCCHHHHHHHH
Q 019113 31 HRGYPTETLVRFLKARDGNVSKAHKML 57 (346)
Q Consensus 31 ~~~~~d~~LlRFLra~~~dv~~A~~~l 57 (346)
.-+++....++=|.++++|++.|..-|
T Consensus 13 ~mGF~~~~a~~Al~a~~~n~e~A~~~L 39 (47)
T 1dv0_A 13 ALGFPESLVIQAYFACEKNENLAANFL 39 (47)
T ss_dssp TTTCCHHHHHHHHTTTTSCHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 347888899999999999999998765
No 49
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.04 E-value=1e+02 Score=20.65 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=21.4
Q ss_pred cCCChHHHHHHHhhcCC-CHHHHHHHHH
Q 019113 32 RGYPTETLVRFLKARDG-NVSKAHKMLM 58 (346)
Q Consensus 32 ~~~~d~~LlRFLra~~~-dv~~A~~~l~ 58 (346)
-+++.....+=|++.++ |++.|.+-|-
T Consensus 29 MGF~~~~a~~AL~~t~~~nve~A~ewL~ 56 (64)
T 2cpw_A 29 MGFPRARAQKALASTGGRSVQTACDWLF 56 (64)
T ss_dssp HTCCHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 36777888888888888 8888887664
No 50
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=20.82 E-value=1.9e+02 Score=18.96 Aligned_cols=31 Identities=19% Similarity=0.392 Sum_probs=26.9
Q ss_pred hcccCCChHHHHHHHhhcCCCHHHHHHHHHH
Q 019113 29 NIHRGYPTETLVRFLKARDGNVSKAHKMLMD 59 (346)
Q Consensus 29 ~~~~~~~d~~LlRFLra~~~dv~~A~~~l~~ 59 (346)
.+..+|+....+|=|...+.|++.|...|.+
T Consensus 14 L~smGfsr~da~~AL~ia~Ndv~~AtNiLlE 44 (56)
T 2juj_A 14 LMSQGYSYQDIQKALVIAQNNIEMAKNILRE 44 (56)
T ss_dssp HHTTTCCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3567899999999999999999999988865
No 51
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=20.00 E-value=1.1e+02 Score=27.07 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=22.7
Q ss_pred CCChHHHHHHHhhcCCCHHHHHHHHHH
Q 019113 33 GYPTETLVRFLKARDGNVSKAHKMLMD 59 (346)
Q Consensus 33 ~~~d~~LlRFLra~~~dv~~A~~~l~~ 59 (346)
+.++....+||.+++||++.|+..+-+
T Consensus 27 g~~~~~A~~~L~~~~WdLe~Al~~ff~ 53 (270)
T 3bq3_A 27 KCDPKVSRKYLQRNHWNINYALNDYYD 53 (270)
T ss_dssp CCCHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 456778899999999999999987643
Done!