BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019114
         (346 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OB1|C Chain C, Crystal Structure Of A Fab Complex Whith Plasmodium
           Falciparum Msp1-19
 pdb|1OB1|F Chain F, Crystal Structure Of A Fab Complex Whith Plasmodium
           Falciparum Msp1-19
          Length = 99

 Score = 30.8 bits (68), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 7/61 (11%)

Query: 269 MTTFKNKGSSKTENPLMPCCV----GIGKDSSCGSVDD--NGVKLYTVCAKPEASFFWDG 322
           +  +K +G    ENP  P C     G   D+ C   D   NG K+   C KP++   +DG
Sbjct: 31  LLNYKQEGDKCVENP-NPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDSYPLFDG 89

Query: 323 V 323
           +
Sbjct: 90  I 90


>pdb|1CEJ|A Chain A, Solution Structure Of An Egf Module Pair From The
           Plasmodium Falciparum Merozoite Surface Protein 1
          Length = 96

 Score = 30.8 bits (68), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 7/61 (11%)

Query: 269 MTTFKNKGSSKTENPLMPCCV----GIGKDSSCGSVDD--NGVKLYTVCAKPEASFFWDG 322
           +  +K +G    ENP  P C     G   D+ C   D   NG K+   C KP++   +DG
Sbjct: 31  LLNYKQEGDKCVENP-NPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDSYPLFDG 89

Query: 323 V 323
           +
Sbjct: 90  I 90


>pdb|3SZA|A Chain A, Crystal Structure Of Human Aldh3a1 - Apo Form
 pdb|3SZA|B Chain B, Crystal Structure Of Human Aldh3a1 - Apo Form
 pdb|3SZB|A Chain A, Crystal Structure Of Human Aldh3a1 Modified With The
           Beta-Elimination Product Of Aldi-1; 1-Phenyl-
           2-Propen-1-One
 pdb|3SZB|B Chain B, Crystal Structure Of Human Aldh3a1 Modified With The
           Beta-Elimination Product Of Aldi-1; 1-Phenyl-
           2-Propen-1-One
          Length = 469

 Score = 28.5 bits (62), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 111 GMNFAFGGTGVFDTLVANPNMTTQIDFFQQVIKEAVYSP 149
           G   A+GGTG   T    P + T +D    V++E ++ P
Sbjct: 316 GQKVAYGGTGDAATRYIAPTILTDVDPQSPVMQEEIFGP 354


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,083,540
Number of Sequences: 62578
Number of extensions: 433596
Number of successful extensions: 680
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 678
Number of HSP's gapped (non-prelim): 6
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)