Query 019115
Match_columns 346
No_of_seqs 312 out of 3258
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 06:48:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019115.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019115hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 1.1E-43 2.3E-48 317.1 25.2 284 55-342 24-313 (493)
2 PTZ00102 disulphide isomerase; 100.0 2.2E-38 4.9E-43 297.5 32.9 273 56-346 32-308 (477)
3 TIGR01130 ER_PDI_fam protein d 100.0 1.6E-37 3.5E-42 290.9 29.8 282 57-346 2-298 (462)
4 KOG0912 Thiol-disulfide isomer 100.0 2.2E-38 4.7E-43 259.7 20.0 278 61-346 1-290 (375)
5 KOG4277 Uncharacterized conser 100.0 7.2E-33 1.6E-37 227.1 15.6 246 72-324 42-304 (468)
6 PF01216 Calsequestrin: Calseq 100.0 6.1E-28 1.3E-32 202.6 27.3 285 55-345 33-334 (383)
7 cd03006 PDI_a_EFP1_N PDIa fami 99.9 1.6E-25 3.5E-30 165.6 12.3 102 55-156 8-113 (113)
8 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 9.9E-25 2.2E-29 160.4 11.8 99 57-155 2-100 (101)
9 KOG0910 Thioredoxin-like prote 99.9 3.8E-24 8.3E-29 160.6 11.1 105 57-161 44-149 (150)
10 PRK10996 thioredoxin 2; Provis 99.9 4.3E-23 9.3E-28 159.9 16.1 134 27-160 6-139 (139)
11 PF00085 Thioredoxin: Thioredo 99.9 4.6E-23 9.9E-28 152.4 15.2 102 58-159 1-103 (103)
12 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 2E-23 4.3E-28 154.4 11.9 100 57-156 2-104 (104)
13 cd03065 PDI_b_Calsequestrin_N 99.9 4.2E-23 9.2E-28 153.5 12.7 105 55-160 8-119 (120)
14 cd02996 PDI_a_ERp44 PDIa famil 99.9 2.9E-23 6.3E-28 154.5 11.8 100 57-156 2-108 (108)
15 KOG0191 Thioredoxin/protein di 99.9 3.4E-22 7.4E-27 181.5 19.7 257 66-325 40-334 (383)
16 PTZ00443 Thioredoxin domain-co 99.9 3.7E-22 7.9E-27 164.9 15.8 107 55-161 29-140 (224)
17 cd02994 PDI_a_TMX PDIa family, 99.9 1.9E-22 4.1E-27 148.3 12.7 99 57-158 2-101 (101)
18 COG3118 Thioredoxin domain-con 99.9 1.6E-22 3.4E-27 168.2 12.0 107 56-162 23-132 (304)
19 PHA02278 thioredoxin-like prot 99.9 4.5E-22 9.7E-27 144.8 12.7 93 63-155 4-100 (103)
20 cd02954 DIM1 Dim1 family; Dim1 99.9 2.6E-22 5.5E-27 146.8 10.6 90 63-152 2-93 (114)
21 TIGR02187 GlrX_arch Glutaredox 99.9 5.2E-21 1.1E-25 159.9 20.0 182 73-262 19-214 (215)
22 cd02963 TRX_DnaJ TRX domain, D 99.9 4.6E-22 1E-26 148.2 12.0 99 60-158 8-110 (111)
23 cd03005 PDI_a_ERp46 PDIa famil 99.9 4.9E-22 1.1E-26 146.5 12.0 98 58-156 2-102 (102)
24 PRK09381 trxA thioredoxin; Pro 99.9 1.5E-21 3.3E-26 145.5 14.3 106 55-160 2-108 (109)
25 cd03002 PDI_a_MPD1_like PDI fa 99.9 8.2E-22 1.8E-26 147.1 11.9 99 58-156 2-108 (109)
26 cd02956 ybbN ybbN protein fami 99.9 1.9E-21 4E-26 141.6 12.2 93 65-157 2-96 (96)
27 cd02999 PDI_a_ERp44_like PDIa 99.9 1.5E-21 3.3E-26 142.3 10.7 84 71-156 16-100 (100)
28 cd02997 PDI_a_PDIR PDIa family 99.9 3.4E-21 7.3E-26 142.6 12.2 99 58-156 2-104 (104)
29 cd02985 TRX_CDSP32 TRX family, 99.9 6.3E-21 1.4E-25 140.2 12.8 94 62-157 2-100 (103)
30 cd02948 TRX_NDPK TRX domain, T 99.9 6.7E-21 1.4E-25 139.9 12.8 96 61-158 5-101 (102)
31 cd03001 PDI_a_P5 PDIa family, 99.9 6.9E-21 1.5E-25 140.6 12.5 99 58-156 2-102 (103)
32 TIGR01126 pdi_dom protein disu 99.9 5.8E-21 1.2E-25 140.8 11.7 99 61-159 1-101 (102)
33 cd03007 PDI_a_ERp29_N PDIa fam 99.9 5.5E-21 1.2E-25 140.2 10.2 99 57-159 2-115 (116)
34 cd02962 TMX2 TMX2 family; comp 99.9 4E-20 8.7E-25 143.7 15.5 90 56-145 28-126 (152)
35 cd02993 PDI_a_APS_reductase PD 99.8 1.2E-20 2.5E-25 140.4 11.6 100 57-156 2-109 (109)
36 cd02965 HyaE HyaE family; HyaE 99.8 1.8E-20 3.9E-25 136.0 12.0 97 57-153 11-109 (111)
37 PF13848 Thioredoxin_6: Thiore 99.8 2.3E-20 5E-25 152.9 13.4 151 189-346 2-157 (184)
38 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 3.2E-20 7E-25 137.3 10.9 99 57-156 1-104 (104)
39 cd03000 PDI_a_TMX3 PDIa family 99.8 7.2E-20 1.6E-24 135.1 11.6 94 64-159 7-103 (104)
40 cd02998 PDI_a_ERp38 PDIa famil 99.8 7.4E-20 1.6E-24 135.6 11.1 99 58-156 2-105 (105)
41 TIGR01068 thioredoxin thioredo 99.8 2.2E-19 4.7E-24 132.1 12.9 99 61-159 1-100 (101)
42 PLN00410 U5 snRNP protein, DIM 99.8 2.6E-19 5.6E-24 136.1 13.1 99 62-160 10-120 (142)
43 cd02950 TxlA TRX-like protein 99.8 2.4E-19 5.2E-24 139.2 13.0 100 62-161 9-111 (142)
44 KOG0907 Thioredoxin [Posttrans 99.8 1.5E-19 3.2E-24 131.4 10.9 86 71-158 19-104 (106)
45 cd02961 PDI_a_family Protein D 99.8 1.3E-19 2.9E-24 133.1 10.3 97 60-156 2-101 (101)
46 cd02989 Phd_like_TxnDC9 Phosdu 99.8 6.2E-19 1.3E-23 131.4 13.5 89 57-146 5-94 (113)
47 cd02953 DsbDgamma DsbD gamma f 99.8 1.3E-19 2.9E-24 133.8 9.6 93 64-156 2-103 (104)
48 cd02957 Phd_like Phosducin (Ph 99.8 4.6E-19 9.9E-24 132.7 12.3 89 56-146 4-95 (113)
49 cd02949 TRX_NTR TRX domain, no 99.8 1.4E-18 3E-23 126.5 12.1 88 70-157 10-97 (97)
50 cd02984 TRX_PICOT TRX domain, 99.8 1.3E-18 2.9E-23 126.8 11.8 93 63-156 2-96 (97)
51 PTZ00051 thioredoxin; Provisio 99.8 3.5E-18 7.5E-23 124.8 11.6 90 62-153 7-96 (98)
52 TIGR00424 APS_reduc 5'-adenyly 99.8 3.6E-18 7.8E-23 154.9 13.5 108 51-158 346-461 (463)
53 cd02986 DLP Dim1 family, Dim1- 99.8 3.3E-18 7.2E-23 123.9 9.5 78 64-141 3-82 (114)
54 KOG1731 FAD-dependent sulfhydr 99.8 1.3E-17 2.7E-22 149.6 14.8 225 54-282 37-294 (606)
55 cd02992 PDI_a_QSOX PDIa family 99.8 7.9E-18 1.7E-22 125.8 11.5 96 57-152 2-108 (114)
56 PLN02309 5'-adenylylsulfate re 99.8 6.7E-18 1.5E-22 153.1 13.0 107 53-159 342-456 (457)
57 PRK15412 thiol:disulfide inter 99.8 4E-17 8.7E-22 133.1 15.5 110 46-161 41-177 (185)
58 PTZ00102 disulphide isomerase; 99.8 1.2E-17 2.5E-22 157.3 13.7 116 49-164 350-469 (477)
59 TIGR01295 PedC_BrcD bacterioci 99.7 2.7E-17 5.8E-22 124.0 12.8 99 57-157 7-121 (122)
60 cd02951 SoxW SoxW family; SoxW 99.7 1.8E-17 3.9E-22 126.6 11.6 98 64-161 4-120 (125)
61 cd02987 Phd_like_Phd Phosducin 99.7 4E-17 8.7E-22 130.9 12.9 101 55-157 61-172 (175)
62 cd02975 PfPDO_like_N Pyrococcu 99.7 3.1E-17 6.7E-22 122.3 11.4 94 66-160 15-110 (113)
63 cd02947 TRX_family TRX family; 99.7 8.9E-17 1.9E-21 115.8 12.5 91 65-156 2-92 (93)
64 PTZ00062 glutaredoxin; Provisi 99.7 7.6E-16 1.6E-20 125.3 17.3 161 62-236 5-174 (204)
65 KOG0908 Thioredoxin-like prote 99.7 5.4E-17 1.2E-21 130.7 10.2 100 62-163 8-109 (288)
66 KOG0190 Protein disulfide isom 99.7 2.5E-17 5.5E-22 148.3 9.0 114 46-161 355-474 (493)
67 PRK03147 thiol-disulfide oxido 99.7 2.8E-16 6E-21 127.3 14.1 111 46-159 37-171 (173)
68 PRK14018 trifunctional thiored 99.7 2.4E-16 5.3E-21 144.9 14.7 101 57-159 42-172 (521)
69 cd02982 PDI_b'_family Protein 99.6 1.1E-15 2.5E-20 112.5 10.2 88 72-159 11-102 (103)
70 TIGR00385 dsbE periplasmic pro 99.6 4.4E-15 9.6E-20 119.9 14.5 110 46-161 36-172 (173)
71 cd02988 Phd_like_VIAF Phosduci 99.6 2.3E-15 4.9E-20 122.3 12.4 99 55-157 81-189 (192)
72 TIGR00411 redox_disulf_1 small 99.6 2.7E-15 5.9E-20 105.6 10.9 80 76-159 2-81 (82)
73 TIGR02738 TrbB type-F conjugat 99.6 6E-15 1.3E-19 115.2 13.8 87 71-159 48-152 (153)
74 TIGR01130 ER_PDI_fam protein d 99.6 2.5E-15 5.4E-20 141.0 12.4 113 50-164 340-458 (462)
75 cd02952 TRP14_like Human TRX-r 99.6 2.4E-15 5.1E-20 111.6 9.0 77 62-138 8-101 (119)
76 cd03010 TlpA_like_DsbE TlpA-li 99.6 8.6E-15 1.9E-19 112.2 10.8 87 64-152 16-126 (127)
77 cd02959 ERp19 Endoplasmic reti 99.6 1.7E-15 3.7E-20 113.4 6.6 97 64-160 10-113 (117)
78 PRK13728 conjugal transfer pro 99.6 1.9E-14 4.1E-19 114.1 12.6 84 77-162 73-173 (181)
79 PF13098 Thioredoxin_2: Thiore 99.6 1.9E-14 4.1E-19 107.7 8.5 85 72-156 4-112 (112)
80 KOG0191 Thioredoxin/protein di 99.5 3.5E-14 7.6E-19 129.2 10.6 182 57-241 145-355 (383)
81 cd03008 TryX_like_RdCVF Trypar 99.5 6.2E-14 1.3E-18 108.1 9.9 72 71-142 23-128 (146)
82 cd03009 TryX_like_TryX_NRX Try 99.5 7.5E-14 1.6E-18 107.6 9.4 81 61-141 6-114 (131)
83 cd02955 SSP411 TRX domain, SSP 99.5 1.4E-13 3E-18 103.4 10.4 97 62-158 4-117 (124)
84 TIGR01626 ytfJ_HI0045 conserve 99.5 4.3E-13 9.4E-18 107.1 13.7 89 65-156 51-176 (184)
85 TIGR00412 redox_disulf_2 small 99.5 1.7E-13 3.7E-18 94.3 9.6 73 77-156 2-75 (76)
86 PLN02399 phospholipid hydroper 99.5 2.3E-13 4.9E-18 113.6 11.4 104 57-160 83-234 (236)
87 TIGR02187 GlrX_arch Glutaredox 99.5 2.4E-13 5.2E-18 113.7 11.5 95 60-158 119-214 (215)
88 PHA02125 thioredoxin-like prot 99.5 2.9E-13 6.4E-18 93.0 9.9 69 77-154 2-71 (75)
89 cd02964 TryX_like_family Trypa 99.5 1.6E-13 3.5E-18 105.7 8.9 70 71-140 15-113 (132)
90 PF13905 Thioredoxin_8: Thiore 99.5 2.7E-13 5.9E-18 98.2 9.5 66 73-138 1-94 (95)
91 PTZ00056 glutathione peroxidas 99.5 2.6E-13 5.5E-18 111.6 10.2 105 57-161 23-179 (199)
92 TIGR02661 MauD methylamine deh 99.5 4.6E-13 9.9E-18 109.5 11.5 110 45-159 47-178 (189)
93 TIGR02740 TraF-like TraF-like 99.5 5.1E-13 1.1E-17 114.7 12.3 88 72-161 165-265 (271)
94 PRK00293 dipZ thiol:disulfide 99.5 3E-13 6.4E-18 128.3 11.6 97 62-159 459-569 (571)
95 cd03011 TlpA_like_ScsD_MtbDsbE 99.5 4.3E-13 9.3E-18 102.2 10.4 97 57-155 4-121 (123)
96 PLN02919 haloacid dehalogenase 99.5 4.2E-13 9.1E-18 135.5 13.0 115 45-160 392-536 (1057)
97 PF08534 Redoxin: Redoxin; In 99.4 5.6E-13 1.2E-17 104.8 9.8 88 61-148 16-136 (146)
98 cd02966 TlpA_like_family TlpA- 99.4 5.8E-13 1.2E-17 99.9 9.3 85 61-145 7-116 (116)
99 cd02967 mauD Methylamine utili 99.4 1E-12 2.2E-17 98.6 8.3 68 72-139 20-108 (114)
100 cd03012 TlpA_like_DipZ_like Tl 99.4 2E-12 4.3E-17 98.8 9.5 75 72-146 22-125 (126)
101 PLN02412 probable glutathione 99.4 4.6E-12 1E-16 101.4 11.0 105 57-161 13-165 (167)
102 TIGR02540 gpx7 putative glutat 99.4 7E-12 1.5E-16 99.2 10.8 102 58-159 7-152 (153)
103 PF13848 Thioredoxin_6: Thiore 99.4 2.4E-10 5.2E-15 93.4 19.9 167 90-262 7-184 (184)
104 PRK11509 hydrogenase-1 operon 99.4 2.5E-11 5.4E-16 91.0 12.6 105 60-164 21-128 (132)
105 cd00340 GSH_Peroxidase Glutath 99.3 3.5E-12 7.6E-17 100.7 8.3 96 59-155 8-151 (152)
106 cd02973 TRX_GRX_like Thioredox 99.3 8.6E-12 1.9E-16 83.9 6.9 60 76-138 2-61 (67)
107 cd02958 UAS UAS family; UAS is 99.3 4.5E-11 9.7E-16 89.5 11.5 93 68-160 12-111 (114)
108 cd03026 AhpF_NTD_C TRX-GRX-lik 99.3 4.9E-11 1.1E-15 84.4 9.5 76 72-152 11-86 (89)
109 cd02969 PRX_like1 Peroxiredoxi 99.3 7.7E-11 1.7E-15 95.1 12.0 107 59-165 10-157 (171)
110 cd02981 PDI_b_family Protein D 99.3 8.1E-11 1.7E-15 85.5 10.8 95 165-263 2-97 (97)
111 KOG0913 Thiol-disulfide isomer 99.2 2.2E-12 4.7E-17 103.6 1.7 105 57-164 25-130 (248)
112 PTZ00256 glutathione peroxidas 99.2 7.1E-11 1.5E-15 96.1 9.7 104 57-160 24-181 (183)
113 cd02960 AGR Anterior Gradient 99.2 4.7E-11 1E-15 89.6 7.3 82 66-148 16-101 (130)
114 cd03066 PDI_b_Calsequestrin_mi 99.2 2.5E-10 5.4E-15 83.5 11.1 97 164-264 2-101 (102)
115 cd03069 PDI_b_ERp57 PDIb famil 99.2 3.1E-10 6.8E-15 83.2 10.1 95 164-263 2-103 (104)
116 COG4232 Thiol:disulfide interc 99.2 2.2E-10 4.8E-15 104.9 11.0 100 59-159 457-567 (569)
117 cd03017 PRX_BCP Peroxiredoxin 99.2 2.6E-10 5.7E-15 88.8 9.9 99 58-156 8-139 (140)
118 PRK00522 tpx lipid hydroperoxi 99.1 4.6E-10 9.9E-15 89.9 10.9 108 45-156 19-165 (167)
119 COG2143 Thioredoxin-related pr 99.1 2.3E-09 5.1E-14 80.6 13.3 92 69-160 38-149 (182)
120 PF00578 AhpC-TSA: AhpC/TSA fa 99.1 1.4E-10 3.1E-15 88.3 7.1 69 72-140 24-122 (124)
121 smart00594 UAS UAS domain. 99.1 8.7E-10 1.9E-14 83.4 11.2 89 68-156 22-121 (122)
122 KOG0914 Thioredoxin-like prote 99.1 2.5E-10 5.4E-15 90.6 8.0 88 57-144 125-222 (265)
123 cd03015 PRX_Typ2cys Peroxiredo 99.1 9.2E-10 2E-14 88.9 10.7 88 72-159 28-156 (173)
124 PF13899 Thioredoxin_7: Thiore 99.1 2.9E-10 6.2E-15 79.6 6.7 69 66-135 10-81 (82)
125 PRK09437 bcp thioredoxin-depen 99.1 1.5E-09 3.4E-14 85.9 11.1 103 47-152 7-145 (154)
126 cd03014 PRX_Atyp2cys Peroxired 99.1 1.4E-09 3E-14 85.0 9.8 89 57-146 10-129 (143)
127 TIGR03137 AhpC peroxiredoxin. 99.0 2.6E-09 5.7E-14 87.2 11.2 87 72-158 30-154 (187)
128 cd03068 PDI_b_ERp72 PDIb famil 99.0 4.7E-09 1E-13 77.1 10.2 97 163-263 1-107 (107)
129 cd03018 PRX_AhpE_like Peroxire 99.0 4.7E-09 1E-13 82.7 10.5 90 58-147 12-134 (149)
130 COG0526 TrxA Thiol-disulfide i 99.0 3.5E-09 7.7E-14 79.5 8.5 82 73-154 32-118 (127)
131 cd02970 PRX_like2 Peroxiredoxi 98.9 6.3E-09 1.4E-13 81.9 9.7 57 59-115 8-67 (149)
132 cd03007 PDI_a_ERp29_N PDIa fam 98.9 1.5E-08 3.3E-13 74.7 10.3 95 166-263 5-115 (116)
133 KOG2501 Thioredoxin, nucleored 98.9 3.1E-09 6.8E-14 81.2 6.8 70 71-140 31-129 (157)
134 PRK13190 putative peroxiredoxi 98.9 1.4E-08 3.1E-13 83.8 11.1 89 72-160 26-154 (202)
135 PRK10382 alkyl hydroperoxide r 98.9 1.6E-08 3.4E-13 82.1 11.0 88 72-159 30-155 (187)
136 cd03072 PDI_b'_ERp44 PDIb' fam 98.9 1.9E-09 4.1E-14 79.8 4.9 76 268-346 1-79 (111)
137 PRK10606 btuE putative glutath 98.9 1.7E-08 3.6E-13 81.5 10.4 134 57-201 9-175 (183)
138 TIGR02196 GlrX_YruB Glutaredox 98.9 1.7E-08 3.6E-13 69.0 8.3 68 77-156 2-73 (74)
139 cd02971 PRX_family Peroxiredox 98.9 1.6E-08 3.5E-13 78.6 8.9 89 60-148 9-131 (140)
140 cd02968 SCO SCO (an acronym fo 98.8 1E-08 2.2E-13 80.0 7.4 57 58-114 7-68 (142)
141 cd03004 PDI_a_ERdj5_C PDIa fam 98.8 3.9E-08 8.5E-13 72.3 9.9 94 163-260 2-104 (104)
142 cd03003 PDI_a_ERdj5_N PDIa fam 98.8 5.6E-08 1.2E-12 71.0 10.6 93 163-260 2-101 (101)
143 PF00085 Thioredoxin: Thioredo 98.8 2.6E-08 5.7E-13 72.9 8.5 91 169-263 5-103 (103)
144 cd03006 PDI_a_EFP1_N PDIa fami 98.8 5.7E-08 1.2E-12 72.0 9.5 94 162-260 9-113 (113)
145 cd03016 PRX_1cys Peroxiredoxin 98.8 9.5E-08 2.1E-12 79.1 11.4 85 75-159 28-153 (203)
146 cd01659 TRX_superfamily Thiore 98.8 3.8E-08 8.2E-13 65.1 7.3 60 77-137 1-63 (69)
147 cd02996 PDI_a_ERp44 PDIa famil 98.8 1.1E-07 2.4E-12 70.4 10.5 93 164-260 3-108 (108)
148 PF13728 TraF: F plasmid trans 98.8 9.5E-08 2.1E-12 79.3 10.9 83 72-156 119-214 (215)
149 KOG0912 Thiol-disulfide isomer 98.7 8.2E-08 1.8E-12 80.5 10.2 146 170-319 3-161 (375)
150 PRK13599 putative peroxiredoxi 98.7 1.1E-07 2.5E-12 78.9 11.1 88 72-159 27-155 (215)
151 TIGR02200 GlrX_actino Glutared 98.7 8E-08 1.7E-12 66.3 8.2 69 77-156 2-75 (77)
152 PRK15000 peroxidase; Provision 98.7 1.4E-07 3E-12 77.6 10.5 87 72-158 33-160 (200)
153 TIGR03143 AhpF_homolog putativ 98.7 2.2E-06 4.8E-11 82.1 20.0 179 72-260 365-554 (555)
154 PTZ00137 2-Cys peroxiredoxin; 98.7 2E-07 4.3E-12 79.2 11.2 88 72-159 97-224 (261)
155 PRK13189 peroxiredoxin; Provis 98.7 2.1E-07 4.6E-12 77.8 11.3 88 72-159 34-162 (222)
156 PRK13191 putative peroxiredoxi 98.7 2.7E-07 5.9E-12 76.7 11.4 88 72-159 32-160 (215)
157 cd03002 PDI_a_MPD1_like PDI fa 98.7 2.5E-07 5.5E-12 68.5 10.0 94 164-261 2-109 (109)
158 PF07912 ERp29_N: ERp29, N-ter 98.7 9.5E-07 2.1E-11 64.3 12.4 103 57-161 5-120 (126)
159 PF13192 Thioredoxin_3: Thiore 98.7 3E-07 6.6E-12 63.1 9.5 73 78-157 3-76 (76)
160 cd03001 PDI_a_P5 PDIa family, 98.6 5.2E-07 1.1E-11 66.0 10.1 92 165-260 3-102 (103)
161 KOG0910 Thioredoxin-like prote 98.6 3.1E-07 6.7E-12 69.8 8.5 93 167-263 47-147 (150)
162 cd03065 PDI_b_Calsequestrin_N 98.6 5.7E-07 1.2E-11 67.1 9.9 94 163-262 10-117 (120)
163 TIGR02739 TraF type-F conjugat 98.6 6.6E-07 1.4E-11 75.6 11.1 86 73-160 150-248 (256)
164 KOG0911 Glutaredoxin-related p 98.6 7E-07 1.5E-11 72.1 10.5 83 69-152 13-95 (227)
165 PF02114 Phosducin: Phosducin; 98.6 5.3E-07 1.2E-11 76.9 10.2 103 56-160 125-238 (265)
166 PTZ00253 tryparedoxin peroxida 98.6 8E-07 1.7E-11 73.4 11.0 88 71-158 34-162 (199)
167 cd02991 UAS_ETEA UAS family, E 98.5 1.8E-06 3.8E-11 64.3 11.3 89 69-160 13-113 (116)
168 PF03190 Thioredox_DsbH: Prote 98.5 4.8E-07 1E-11 70.5 8.4 82 60-141 24-117 (163)
169 TIGR01126 pdi_dom protein disu 98.5 1E-06 2.2E-11 64.3 9.8 90 170-263 3-101 (102)
170 PRK13703 conjugal pilus assemb 98.5 1.4E-06 3E-11 73.2 11.0 86 73-160 143-241 (248)
171 PF01216 Calsequestrin: Calseq 98.5 4.1E-06 8.9E-11 72.0 13.6 162 163-337 35-212 (383)
172 cd03073 PDI_b'_ERp72_ERp57 PDI 98.5 1.4E-07 3.1E-12 69.6 4.0 75 269-346 2-83 (111)
173 TIGR02180 GRX_euk Glutaredoxin 98.5 4.5E-07 9.7E-12 63.7 6.0 58 77-138 1-63 (84)
174 KOG1672 ATP binding protein [P 98.4 6.3E-07 1.4E-11 70.4 6.9 84 62-146 73-156 (211)
175 cd02982 PDI_b'_family Protein 98.4 3E-07 6.6E-12 67.3 5.0 69 275-346 4-74 (103)
176 PRK11200 grxA glutaredoxin 1; 98.4 2.3E-06 4.9E-11 60.2 8.6 76 76-160 2-83 (85)
177 cd02994 PDI_a_TMX PDIa family, 98.4 3.5E-06 7.6E-11 61.4 9.8 91 164-262 3-101 (101)
178 cd02983 P5_C P5 family, C-term 98.4 9.1E-07 2E-11 67.4 6.8 78 266-346 2-87 (130)
179 cd02993 PDI_a_APS_reductase PD 98.4 3.3E-06 7.2E-11 62.5 9.7 93 164-260 3-109 (109)
180 cd02961 PDI_a_family Protein D 98.4 3.4E-06 7.4E-11 61.1 9.6 89 169-260 4-101 (101)
181 cd02989 Phd_like_TxnDC9 Phosdu 98.4 7.3E-06 1.6E-10 61.0 11.4 96 162-260 4-112 (113)
182 PHA02278 thioredoxin-like prot 98.4 2.5E-06 5.5E-11 62.1 8.6 88 168-259 2-100 (103)
183 PF14595 Thioredoxin_9: Thiore 98.4 1.6E-06 3.5E-11 65.8 7.6 86 61-148 28-118 (129)
184 PRK10996 thioredoxin 2; Provis 98.4 3.6E-06 7.7E-11 65.2 9.7 91 169-263 41-138 (139)
185 cd02999 PDI_a_ERp44_like PDIa 98.4 2.2E-06 4.7E-11 62.3 8.0 77 179-260 17-100 (100)
186 PRK09381 trxA thioredoxin; Pro 98.4 5.1E-06 1.1E-10 61.5 10.1 97 162-263 3-107 (109)
187 cd02995 PDI_a_PDI_a'_C PDIa fa 98.4 3.4E-06 7.4E-11 61.7 9.1 93 164-260 2-104 (104)
188 cd02998 PDI_a_ERp38 PDIa famil 98.3 4.6E-06 9.9E-11 61.1 9.4 92 165-260 3-105 (105)
189 PRK10877 protein disulfide iso 98.3 3.6E-06 7.8E-11 70.9 9.7 81 72-159 106-230 (232)
190 cd02956 ybbN ybbN protein fami 98.3 4.9E-06 1.1E-10 60.0 9.0 85 173-261 3-96 (96)
191 KOG4277 Uncharacterized conser 98.3 4.1E-06 8.8E-11 70.3 9.5 111 178-293 41-163 (468)
192 KOG2603 Oligosaccharyltransfer 98.3 6.9E-06 1.5E-10 69.5 10.8 112 54-165 38-171 (331)
193 cd03005 PDI_a_ERp46 PDIa famil 98.3 4E-06 8.7E-11 61.1 8.4 90 165-260 3-102 (102)
194 PF06110 DUF953: Eukaryotic pr 98.3 5.7E-06 1.2E-10 61.3 8.5 67 71-137 17-99 (119)
195 cd02953 DsbDgamma DsbD gamma f 98.3 7.1E-06 1.5E-10 60.1 8.8 88 171-261 2-104 (104)
196 cd02948 TRX_NDPK TRX domain, T 98.2 1.4E-05 3E-10 58.4 9.8 92 166-262 3-101 (102)
197 KOG3425 Uncharacterized conser 98.2 5E-06 1.1E-10 60.0 7.0 73 64-136 13-104 (128)
198 cd02963 TRX_DnaJ TRX domain, D 98.2 1E-05 2.2E-10 60.1 8.9 80 179-262 23-110 (111)
199 cd03072 PDI_b'_ERp44 PDIb' fam 98.2 2E-05 4.3E-10 58.3 10.2 101 59-161 2-109 (111)
200 PTZ00443 Thioredoxin domain-co 98.2 1.2E-05 2.6E-10 67.0 9.9 96 163-263 31-138 (224)
201 cd02997 PDI_a_PDIR PDIa family 98.2 1.1E-05 2.4E-10 59.0 8.8 91 165-260 3-104 (104)
202 cd02981 PDI_b_family Protein D 98.2 1.7E-05 3.8E-10 57.2 9.5 88 64-158 8-96 (97)
203 cd02976 NrdH NrdH-redoxin (Nrd 98.2 1.3E-05 2.8E-10 54.3 8.1 67 77-155 2-72 (73)
204 TIGR00424 APS_reduc 5'-adenyly 98.2 2.1E-05 4.6E-10 72.3 11.3 97 162-262 351-461 (463)
205 TIGR01068 thioredoxin thioredo 98.2 2.2E-05 4.8E-10 56.9 9.4 90 170-263 3-100 (101)
206 cd03020 DsbA_DsbC_DsbG DsbA fa 98.1 1.1E-05 2.4E-10 66.6 8.3 76 73-156 77-197 (197)
207 PF00462 Glutaredoxin: Glutare 98.1 2E-05 4.4E-10 51.2 7.7 54 77-138 1-58 (60)
208 KOG3414 Component of the U4/U6 98.1 2.3E-05 4.9E-10 57.0 8.3 78 62-139 10-89 (142)
209 PTZ00051 thioredoxin; Provisio 98.1 2.2E-05 4.7E-10 56.8 8.6 89 164-257 2-96 (98)
210 COG1225 Bcp Peroxiredoxin [Pos 98.1 5.2E-05 1.1E-09 58.9 10.9 112 45-159 5-155 (157)
211 TIGR03143 AhpF_homolog putativ 98.1 2.2E-05 4.9E-10 75.3 10.9 91 61-156 463-554 (555)
212 PLN02309 5'-adenylylsulfate re 98.1 2.6E-05 5.7E-10 71.7 10.7 96 163-262 346-455 (457)
213 cd02987 Phd_like_Phd Phosducin 98.1 3.9E-05 8.5E-10 61.7 10.1 99 162-263 62-174 (175)
214 cd02983 P5_C P5 family, C-term 98.1 0.00012 2.7E-09 55.7 12.3 108 57-164 3-119 (130)
215 cd02954 DIM1 Dim1 family; Dim1 98.1 2.1E-05 4.5E-10 57.9 7.5 69 170-241 2-79 (114)
216 cd02957 Phd_like Phosducin (Ph 98.1 3.6E-05 7.8E-10 57.3 8.9 93 163-260 5-112 (113)
217 PRK11657 dsbG disulfide isomer 98.0 4E-05 8.7E-10 65.4 10.1 82 73-157 117-249 (251)
218 cd03073 PDI_b'_ERp72_ERp57 PDI 98.0 6.1E-05 1.3E-09 55.6 9.5 99 60-159 3-110 (111)
219 cd02965 HyaE HyaE family; HyaE 98.0 4.7E-05 1E-09 55.6 8.6 85 169-257 16-109 (111)
220 cd03000 PDI_a_TMX3 PDIa family 98.0 5.3E-05 1.1E-09 55.5 9.0 86 171-262 7-102 (104)
221 cd02985 TRX_CDSP32 TRX family, 98.0 5.7E-05 1.2E-09 55.2 9.1 88 169-261 2-100 (103)
222 cd03023 DsbA_Com1_like DsbA fa 98.0 4.8E-05 1E-09 59.9 9.5 33 72-104 4-36 (154)
223 TIGR02183 GRXA Glutaredoxin, G 98.0 5.3E-05 1.1E-09 53.3 8.5 75 77-160 2-82 (86)
224 cd02988 Phd_like_VIAF Phosduci 98.0 9E-05 2E-09 60.5 10.5 99 162-263 82-191 (192)
225 cd02950 TxlA TRX-like protein 98.0 6E-05 1.3E-09 58.5 8.6 90 170-262 10-108 (142)
226 PF11009 DUF2847: Protein of u 97.9 0.00018 3.9E-09 51.7 10.1 91 62-152 6-104 (105)
227 PRK15317 alkyl hydroperoxide r 97.9 7.8E-05 1.7E-09 71.0 10.9 95 61-160 103-198 (517)
228 TIGR02190 GlrX-dom Glutaredoxi 97.9 7.5E-05 1.6E-09 51.6 7.8 58 73-138 6-66 (79)
229 PF13462 Thioredoxin_4: Thiore 97.9 0.00014 3E-09 57.9 10.5 82 72-158 11-162 (162)
230 cd03070 PDI_b_ERp44 PDIb famil 97.9 6.9E-05 1.5E-09 52.5 7.0 83 164-252 1-85 (91)
231 PLN00410 U5 snRNP protein, DIM 97.9 0.00021 4.5E-09 54.8 9.8 95 164-261 5-117 (142)
232 COG3118 Thioredoxin domain-con 97.8 0.00016 3.4E-09 61.5 9.8 99 164-266 25-132 (304)
233 cd02984 TRX_PICOT TRX domain, 97.8 0.00017 3.7E-09 51.9 8.9 87 169-260 1-96 (97)
234 PF07449 HyaE: Hydrogenase-1 e 97.8 0.00019 4.1E-09 51.9 8.7 94 57-151 10-106 (107)
235 cd02947 TRX_family TRX family; 97.8 0.00015 3.2E-09 51.2 8.3 86 172-261 2-93 (93)
236 cd03067 PDI_b_PDIR_N PDIb fami 97.8 0.00021 4.6E-09 50.0 8.2 95 62-157 8-109 (112)
237 cd02949 TRX_NTR TRX domain, no 97.8 0.00027 5.8E-09 51.0 9.2 83 175-261 8-97 (97)
238 cd03419 GRX_GRXh_1_2_like Glut 97.8 7.9E-05 1.7E-09 51.8 6.1 57 77-139 2-63 (82)
239 TIGR02194 GlrX_NrdH Glutaredox 97.8 0.00013 2.8E-09 49.4 7.0 66 78-154 2-70 (72)
240 PF02966 DIM1: Mitosis protein 97.8 0.00078 1.7E-08 50.0 11.2 77 62-139 7-86 (133)
241 PHA03050 glutaredoxin; Provisi 97.7 0.00022 4.8E-09 52.3 7.8 68 66-140 6-80 (108)
242 cd03019 DsbA_DsbA DsbA family, 97.7 0.00037 8E-09 56.4 9.2 38 72-109 14-51 (178)
243 PRK10954 periplasmic protein d 97.7 0.001 2.3E-08 55.2 12.0 39 73-111 37-78 (207)
244 cd02975 PfPDO_like_N Pyrococcu 97.7 0.00058 1.3E-08 50.7 9.4 83 177-262 19-108 (113)
245 cd02066 GRX_family Glutaredoxi 97.6 0.00021 4.7E-09 47.9 6.4 56 77-140 2-61 (72)
246 PTZ00062 glutaredoxin; Provisi 97.6 0.00096 2.1E-08 54.8 11.2 90 167-266 3-96 (204)
247 TIGR03140 AhpF alkyl hydropero 97.6 0.00056 1.2E-08 65.2 11.1 95 60-159 103-198 (515)
248 cd03029 GRX_hybridPRX5 Glutare 97.6 0.00071 1.5E-08 45.7 8.6 66 77-156 3-71 (72)
249 TIGR02181 GRX_bact Glutaredoxi 97.6 0.00019 4.1E-09 49.6 5.8 54 77-138 1-58 (79)
250 KOG0907 Thioredoxin [Posttrans 97.6 0.00081 1.8E-08 49.1 9.1 79 180-263 21-105 (106)
251 PRK10329 glutaredoxin-like pro 97.6 0.0012 2.5E-08 45.7 9.2 72 77-160 3-77 (81)
252 cd03418 GRX_GRXb_1_3_like Glut 97.5 0.00042 9.2E-09 47.2 6.9 55 77-139 2-61 (75)
253 TIGR02189 GlrX-like_plant Glut 97.5 0.00029 6.2E-09 50.9 6.0 55 77-139 10-71 (99)
254 PRK15317 alkyl hydroperoxide r 97.5 0.013 2.8E-07 56.0 18.9 169 74-263 19-197 (517)
255 cd03013 PRX5_like Peroxiredoxi 97.5 0.00087 1.9E-08 52.9 9.0 43 72-114 28-74 (155)
256 PF07912 ERp29_N: ERp29, N-ter 97.5 0.0034 7.3E-08 46.1 11.1 95 169-264 10-119 (126)
257 cd03027 GRX_DEP Glutaredoxin ( 97.5 0.00051 1.1E-08 46.5 6.6 54 77-138 3-60 (73)
258 PF05768 DUF836: Glutaredoxin- 97.5 0.0005 1.1E-08 47.7 6.6 78 77-157 2-81 (81)
259 cd02992 PDI_a_QSOX PDIa family 97.4 0.0016 3.5E-08 48.5 9.4 90 163-256 2-108 (114)
260 cd02962 TMX2 TMX2 family; comp 97.4 0.0016 3.4E-08 51.0 9.5 78 163-241 29-119 (152)
261 TIGR00365 monothiol glutaredox 97.4 0.0011 2.4E-08 47.7 7.7 65 65-138 4-76 (97)
262 TIGR01295 PedC_BrcD bacterioci 97.4 0.0017 3.6E-08 49.0 9.0 91 169-261 12-121 (122)
263 cd02951 SoxW SoxW family; SoxW 97.4 0.0015 3.2E-08 49.5 8.6 90 170-262 3-117 (125)
264 PF00837 T4_deiodinase: Iodoth 97.4 0.0028 6.1E-08 52.5 10.5 67 43-112 72-141 (237)
265 KOG0908 Thioredoxin-like prote 97.3 0.002 4.4E-08 53.2 8.5 95 163-262 2-104 (288)
266 cd02986 DLP Dim1 family, Dim1- 97.3 0.0022 4.7E-08 47.0 7.8 74 171-247 3-85 (114)
267 cd02972 DsbA_family DsbA famil 97.2 0.0011 2.4E-08 47.3 6.5 59 77-135 1-91 (98)
268 PRK11509 hydrogenase-1 operon 97.2 0.0035 7.5E-08 47.4 8.9 92 169-264 23-124 (132)
269 cd03074 PDI_b'_Calsequestrin_C 97.2 0.0012 2.6E-08 46.8 5.7 79 266-345 1-86 (120)
270 cd03066 PDI_b_Calsequestrin_mi 97.2 0.0098 2.1E-07 43.2 10.7 91 62-159 7-100 (102)
271 TIGR03140 AhpF alkyl hydropero 97.1 0.06 1.3E-06 51.4 18.7 169 73-262 19-197 (515)
272 COG0695 GrxC Glutaredoxin and 97.0 0.0025 5.4E-08 44.0 5.9 54 77-138 3-62 (80)
273 cd03069 PDI_b_ERp57 PDIb famil 97.0 0.013 2.7E-07 42.8 9.9 90 62-159 7-103 (104)
274 cd03067 PDI_b_PDIR_N PDIb fami 97.0 0.0028 6.2E-08 44.5 5.9 68 274-342 10-78 (112)
275 PRK10638 glutaredoxin 3; Provi 96.9 0.0039 8.5E-08 43.4 6.0 55 77-139 4-62 (83)
276 cd03028 GRX_PICOT_like Glutare 96.8 0.0055 1.2E-07 43.4 6.5 61 69-138 4-72 (90)
277 COG1999 Uncharacterized protei 96.7 0.061 1.3E-06 44.6 12.8 104 57-160 51-204 (207)
278 PF13743 Thioredoxin_5: Thiore 96.7 0.0072 1.6E-07 48.7 7.0 31 79-109 2-32 (176)
279 PRK10824 glutaredoxin-4; Provi 96.6 0.01 2.2E-07 43.9 6.6 66 65-139 7-80 (115)
280 PRK00293 dipZ thiol:disulfide 96.6 0.019 4.2E-07 55.2 10.4 97 164-263 454-569 (571)
281 cd02952 TRP14_like Human TRX-r 96.5 0.028 6E-07 41.9 8.7 72 167-240 6-100 (119)
282 PF02630 SCO1-SenC: SCO1/SenC; 96.3 0.029 6.3E-07 45.1 8.4 58 57-114 36-97 (174)
283 COG0386 BtuE Glutathione perox 96.3 0.079 1.7E-06 40.7 10.0 103 56-160 8-160 (162)
284 TIGR00411 redox_disulf_1 small 96.3 0.041 8.8E-07 37.8 8.2 72 183-262 2-80 (82)
285 TIGR00412 redox_disulf_2 small 96.2 0.031 6.8E-07 38.1 7.2 69 185-261 3-76 (76)
286 KOG3170 Conserved phosducin-li 96.2 0.046 1E-06 43.7 8.7 107 56-167 91-207 (240)
287 PF02114 Phosducin: Phosducin; 96.1 0.047 1E-06 46.9 9.1 100 163-265 126-239 (265)
288 PRK12759 bifunctional gluaredo 96.1 0.019 4.2E-07 52.8 7.0 55 77-139 4-70 (410)
289 KOG1731 FAD-dependent sulfhydr 96.0 0.036 7.7E-07 51.6 8.2 95 162-260 39-149 (606)
290 KOG1752 Glutaredoxin and relat 95.9 0.059 1.3E-06 39.0 7.5 66 66-139 7-77 (104)
291 KOG3171 Conserved phosducin-li 95.9 0.029 6.3E-07 45.3 6.2 101 57-159 139-250 (273)
292 KOG2640 Thioredoxin [Function 95.8 0.017 3.7E-07 49.5 5.1 87 73-161 76-163 (319)
293 KOG2792 Putative cytochrome C 95.4 0.15 3.1E-06 42.8 8.9 107 55-161 121-276 (280)
294 TIGR02740 TraF-like TraF-like 95.3 0.12 2.6E-06 44.8 8.7 80 180-262 166-262 (271)
295 PRK03147 thiol-disulfide oxido 94.9 0.19 4.1E-06 40.2 8.4 50 211-263 122-171 (173)
296 cd03011 TlpA_like_ScsD_MtbDsbE 94.9 0.11 2.5E-06 38.8 6.6 76 179-258 19-120 (123)
297 COG1331 Highly conserved prote 94.8 0.076 1.6E-06 50.8 6.5 79 61-139 31-121 (667)
298 cd03068 PDI_b_ERp72 PDIb famil 94.7 0.9 1.9E-05 33.2 10.7 90 62-158 7-106 (107)
299 COG4232 Thiol:disulfide interc 94.7 0.12 2.6E-06 48.7 7.3 96 166-264 458-568 (569)
300 PF13098 Thioredoxin_2: Thiore 94.6 0.11 2.4E-06 38.1 5.9 79 179-260 4-112 (112)
301 COG1651 DsbG Protein-disulfide 94.5 0.33 7.2E-06 41.3 9.4 36 119-159 207-242 (244)
302 PF01323 DSBA: DSBA-like thior 94.5 0.5 1.1E-05 38.4 10.1 35 119-157 159-193 (193)
303 PRK14018 trifunctional thiored 94.5 0.068 1.5E-06 50.4 5.3 45 215-262 127-171 (521)
304 cd02959 ERp19 Endoplasmic reti 94.3 0.13 2.7E-06 38.4 5.6 70 171-241 10-87 (117)
305 PF11009 DUF2847: Protein of u 94.0 0.14 3E-06 37.0 4.8 90 165-256 2-104 (105)
306 cd02955 SSP411 TRX domain, SSP 93.8 0.39 8.4E-06 36.2 7.3 70 169-241 4-91 (124)
307 cd02958 UAS UAS family; UAS is 93.8 0.46 1E-05 35.1 7.7 87 173-262 10-109 (114)
308 cd03026 AhpF_NTD_C TRX-GRX-lik 93.7 0.69 1.5E-05 32.5 8.1 70 179-256 11-86 (89)
309 KOG0914 Thioredoxin-like prote 93.1 0.25 5.5E-06 40.3 5.5 77 165-241 127-216 (265)
310 cd03010 TlpA_like_DsbE TlpA-li 93.1 0.25 5.4E-06 37.2 5.4 74 180-256 25-126 (127)
311 smart00594 UAS UAS domain. 93.1 1.1 2.5E-05 33.5 8.9 84 174-260 21-121 (122)
312 TIGR00385 dsbE periplasmic pro 93.0 0.31 6.8E-06 39.1 6.1 45 216-263 126-170 (173)
313 cd02973 TRX_GRX_like Thioredox 92.6 0.73 1.6E-05 30.1 6.6 51 183-236 2-58 (67)
314 cd03031 GRX_GRX_like Glutaredo 92.4 0.55 1.2E-05 36.4 6.4 54 77-138 2-69 (147)
315 COG3019 Predicted metal-bindin 92.3 1.7 3.7E-05 32.9 8.5 74 76-160 27-104 (149)
316 cd02974 AhpF_NTD_N Alkyl hydro 92.1 2.8 6E-05 29.8 9.2 74 72-158 18-92 (94)
317 TIGR02654 circ_KaiB circadian 91.9 0.84 1.8E-05 31.7 6.1 75 74-149 3-78 (87)
318 PRK15412 thiol:disulfide inter 91.9 0.73 1.6E-05 37.4 7.0 42 218-262 133-174 (185)
319 cd02978 KaiB_like KaiB-like fa 91.7 1.1 2.3E-05 30.0 6.2 60 76-135 3-63 (72)
320 PRK09301 circadian clock prote 91.6 0.86 1.9E-05 32.6 6.0 76 73-149 5-81 (103)
321 TIGR02738 TrbB type-F conjugat 91.3 2 4.3E-05 33.7 8.6 79 180-262 50-151 (153)
322 PF06053 DUF929: Domain of unk 91.2 0.37 8E-06 40.7 4.6 58 70-135 55-113 (249)
323 KOG1651 Glutathione peroxidase 90.7 0.96 2.1E-05 35.4 6.0 129 55-194 16-158 (171)
324 COG0450 AhpC Peroxiredoxin [Po 90.3 4.8 0.00011 32.5 9.9 87 73-159 33-160 (194)
325 KOG1672 ATP binding protein [P 90.0 1.6 3.5E-05 35.1 6.8 101 161-264 65-178 (211)
326 PHA03075 glutaredoxin-like pro 90.0 0.58 1.3E-05 34.0 4.0 36 74-113 2-37 (123)
327 TIGR00762 DegV EDD domain prot 89.8 1.2 2.6E-05 38.7 6.8 157 113-284 9-169 (275)
328 PF13417 GST_N_3: Glutathione 89.3 4.8 0.0001 26.9 9.5 72 79-162 1-73 (75)
329 cd02977 ArsC_family Arsenate R 89.0 0.42 9.1E-06 34.7 2.9 76 78-159 2-86 (105)
330 cd03041 GST_N_2GST_N GST_N fam 88.9 5.3 0.00012 26.9 8.5 70 78-159 3-76 (77)
331 PLN02919 haloacid dehalogenase 87.9 2.6 5.6E-05 44.1 8.7 81 179-262 419-534 (1057)
332 COG4545 Glutaredoxin-related p 87.8 1.8 3.9E-05 28.8 4.8 56 78-140 5-76 (85)
333 PF13728 TraF: F plasmid trans 86.8 4.8 0.00011 33.5 8.2 76 180-258 120-212 (215)
334 cd03060 GST_N_Omega_like GST_N 86.4 2.9 6.4E-05 27.6 5.6 55 78-137 2-57 (71)
335 cd03040 GST_N_mPGES2 GST_N fam 86.3 3.7 8.1E-05 27.5 6.2 72 77-161 2-77 (77)
336 cd03074 PDI_b'_Calsequestrin_C 86.2 11 0.00023 27.3 10.6 87 73-159 20-119 (120)
337 KOG2507 Ubiquitin regulatory p 86.1 7.3 0.00016 35.4 9.2 90 71-160 16-111 (506)
338 PF00255 GSHPx: Glutathione pe 85.9 1.2 2.5E-05 32.6 3.6 57 58-115 6-63 (108)
339 KOG0855 Alkyl hydroperoxide re 85.4 4 8.7E-05 31.9 6.4 81 57-137 73-184 (211)
340 KOG3170 Conserved phosducin-li 85.4 16 0.00034 29.8 9.8 100 161-263 90-200 (240)
341 PRK01655 spxA transcriptional 85.2 1.6 3.4E-05 33.3 4.2 35 77-117 2-36 (131)
342 TIGR01617 arsC_related transcr 85.0 1.8 3.9E-05 32.1 4.4 34 78-117 2-35 (117)
343 cd02966 TlpA_like_family TlpA- 84.9 4.6 0.0001 28.9 6.7 19 180-198 19-37 (116)
344 cd03036 ArsC_like Arsenate Red 84.6 1.3 2.8E-05 32.6 3.4 52 78-135 2-57 (111)
345 cd03035 ArsC_Yffb Arsenate Red 84.4 1.3 2.8E-05 32.2 3.3 33 78-116 2-34 (105)
346 PHA02125 thioredoxin-like prot 83.4 2.9 6.3E-05 28.1 4.6 49 184-235 2-51 (75)
347 KOG0913 Thiol-disulfide isomer 83.2 0.57 1.2E-05 38.8 1.1 93 169-268 30-130 (248)
348 PRK13728 conjugal transfer pro 82.2 4.2 9.2E-05 32.8 5.7 76 184-262 73-169 (181)
349 cd02967 mauD Methylamine utili 82.1 9.4 0.0002 27.7 7.3 34 180-213 21-58 (114)
350 COG2761 FrnE Predicted dithiol 81.1 3.7 7.9E-05 34.2 5.1 43 118-164 175-217 (225)
351 PF07449 HyaE: Hydrogenase-1 e 81.0 2.6 5.6E-05 30.7 3.7 73 268-345 11-87 (107)
352 TIGR02742 TrbC_Ftype type-F co 80.8 4 8.7E-05 30.9 4.8 45 115-159 59-114 (130)
353 cd03009 TryX_like_TryX_NRX Try 80.4 5.8 0.00013 29.8 5.8 22 217-241 89-110 (131)
354 COG2143 Thioredoxin-related pr 80.1 26 0.00056 27.4 8.9 81 171-256 33-141 (182)
355 COG3531 Predicted protein-disu 79.9 3.8 8.3E-05 33.1 4.6 44 117-160 164-209 (212)
356 PRK12559 transcriptional regul 79.3 3.2 6.9E-05 31.6 4.0 34 77-116 2-35 (131)
357 PF07689 KaiB: KaiB domain; I 78.6 0.92 2E-05 31.2 0.7 52 81-132 4-56 (82)
358 PF13192 Thioredoxin_3: Thiore 78.3 10 0.00022 25.5 5.9 66 188-261 6-76 (76)
359 PF04592 SelP_N: Selenoprotein 78.2 3.5 7.6E-05 34.3 4.1 44 71-114 24-71 (238)
360 PF02645 DegV: Uncharacterised 77.6 1.7 3.6E-05 38.0 2.2 155 113-284 10-171 (280)
361 cd03051 GST_N_GTT2_like GST_N 77.4 6.4 0.00014 25.8 4.7 52 78-133 2-57 (74)
362 PF09822 ABC_transp_aux: ABC-t 77.4 47 0.001 28.7 13.0 75 55-129 6-90 (271)
363 cd03032 ArsC_Spx Arsenate Redu 77.2 4.8 0.00011 29.7 4.3 33 78-116 3-35 (115)
364 cd00570 GST_N_family Glutathio 77.1 8.5 0.00018 24.5 5.3 54 79-138 3-58 (71)
365 KOG3171 Conserved phosducin-li 77.1 18 0.00039 29.7 7.6 100 163-265 139-252 (273)
366 PF09673 TrbC_Ftype: Type-F co 75.4 11 0.00025 27.7 5.8 45 90-136 36-80 (113)
367 cd02990 UAS_FAF1 UAS family, F 75.4 34 0.00074 26.1 11.7 90 70-160 18-133 (136)
368 cd02960 AGR Anterior Gradient 75.0 13 0.00029 28.1 6.2 24 171-194 14-37 (130)
369 cd03037 GST_N_GRX2 GST_N famil 74.9 5.6 0.00012 26.1 3.8 68 79-157 3-70 (71)
370 cd03059 GST_N_SspA GST_N famil 74.4 13 0.00028 24.3 5.6 69 78-158 2-71 (73)
371 KOG0852 Alkyl hydroperoxide re 73.9 30 0.00065 27.6 7.9 87 71-158 31-159 (196)
372 TIGR02739 TraF type-F conjugat 73.0 25 0.00054 30.2 8.0 78 180-260 150-244 (256)
373 cd03071 PDI_b'_NRX PDIb' famil 72.9 11 0.00024 27.2 4.9 60 284-345 15-85 (116)
374 cd02964 TryX_like_family Trypa 72.8 22 0.00048 26.7 7.2 19 180-198 17-35 (132)
375 cd02991 UAS_ETEA UAS family, E 72.3 15 0.00033 27.1 5.9 85 174-261 11-110 (116)
376 PF06953 ArsD: Arsenical resis 71.5 19 0.00042 26.9 6.2 53 105-160 40-102 (123)
377 COG1307 DegV Uncharacterized p 70.5 21 0.00046 31.1 7.3 158 112-284 10-172 (282)
378 PRK13344 spxA transcriptional 70.4 7.5 0.00016 29.6 4.0 34 77-116 2-35 (132)
379 TIGR02196 GlrX_YruB Glutaredox 70.1 26 0.00057 22.5 6.8 66 184-261 2-74 (74)
380 TIGR02661 MauD methylamine deh 70.1 29 0.00062 28.2 7.6 43 215-262 134-177 (189)
381 PF08806 Sep15_SelM: Sep15/Sel 69.3 9 0.0002 26.1 3.8 34 127-160 41-76 (78)
382 cd03045 GST_N_Delta_Epsilon GS 68.3 17 0.00037 23.9 5.1 51 78-132 2-56 (74)
383 PF13905 Thioredoxin_8: Thiore 67.9 24 0.00052 24.5 6.1 41 284-324 2-46 (95)
384 cd03024 DsbA_FrnE DsbA family, 67.0 7.9 0.00017 31.6 3.8 37 116-156 164-200 (201)
385 KOG2603 Oligosaccharyltransfer 66.9 50 0.0011 29.0 8.5 81 254-337 28-125 (331)
386 PF13778 DUF4174: Domain of un 66.0 52 0.0011 24.4 8.9 88 71-159 8-111 (118)
387 cd03025 DsbA_FrnE_like DsbA fa 64.5 9.9 0.00021 30.7 3.9 28 77-104 3-30 (193)
388 cd02974 AhpF_NTD_N Alkyl hydro 64.4 48 0.001 23.5 6.8 79 172-261 9-91 (94)
389 COG0821 gcpE 1-hydroxy-2-methy 64.4 11 0.00024 33.3 4.2 77 84-160 263-351 (361)
390 PRK00366 ispG 4-hydroxy-3-meth 62.7 11 0.00024 33.6 4.0 75 85-159 271-356 (360)
391 TIGR01626 ytfJ_HI0045 conserve 62.1 65 0.0014 26.1 8.0 47 211-260 129-176 (184)
392 PF04134 DUF393: Protein of un 61.8 13 0.00029 27.1 3.9 63 80-146 2-67 (114)
393 PRK13703 conjugal pilus assemb 61.7 47 0.001 28.4 7.4 78 180-260 143-237 (248)
394 cd03022 DsbA_HCCA_Iso DsbA fam 61.5 13 0.00029 29.9 4.2 35 117-156 157-191 (192)
395 PF13899 Thioredoxin_7: Thiore 61.4 31 0.00067 23.4 5.4 23 172-194 9-31 (82)
396 PRK10299 PhoPQ regulatory prot 60.6 9.1 0.0002 22.8 2.1 18 1-18 1-18 (47)
397 cd03008 TryX_like_RdCVF Trypar 60.3 33 0.00071 26.6 5.8 20 180-199 25-44 (146)
398 PF04551 GcpE: GcpE protein; 60.3 9.7 0.00021 34.0 3.2 82 73-159 264-358 (359)
399 cd03055 GST_N_Omega GST_N fami 59.0 29 0.00062 24.0 5.0 53 77-133 19-72 (89)
400 COG0278 Glutaredoxin-related p 58.0 58 0.0013 23.3 6.1 70 64-138 6-80 (105)
401 PF14595 Thioredoxin_9: Thiore 56.4 44 0.00096 25.2 5.9 62 179-240 40-107 (129)
402 PF11337 DUF3139: Protein of u 55.1 15 0.00033 25.4 2.9 7 1-7 1-7 (85)
403 KOG1422 Intracellular Cl- chan 55.0 76 0.0016 26.2 7.1 69 84-164 20-89 (221)
404 PRK13730 conjugal transfer pil 53.6 31 0.00067 28.2 4.8 42 116-158 151-192 (212)
405 cd03025 DsbA_FrnE_like DsbA fa 52.9 17 0.00037 29.3 3.4 22 117-138 159-180 (193)
406 cd03012 TlpA_like_DipZ_like Tl 51.4 91 0.002 23.0 7.0 15 180-194 23-37 (126)
407 PF00578 AhpC-TSA: AhpC/TSA fa 49.0 77 0.0017 23.1 6.3 54 282-335 24-81 (124)
408 PF05768 DUF836: Glutaredoxin- 48.6 61 0.0013 21.9 5.2 74 184-261 2-81 (81)
409 PLN02399 phospholipid hydroper 48.0 1.7E+02 0.0037 24.8 8.9 31 232-262 202-232 (236)
410 TIGR03521 GldG gliding-associa 47.5 2.8E+02 0.006 27.0 14.4 77 53-129 27-116 (552)
411 cd03033 ArsC_15kD Arsenate Red 46.6 25 0.00055 25.8 3.1 33 77-115 2-34 (113)
412 cd03052 GST_N_GDAP1 GST_N fami 43.4 94 0.002 20.4 5.5 55 78-138 2-60 (73)
413 PTZ00056 glutathione peroxidas 43.2 1.5E+02 0.0033 24.2 7.6 18 180-197 39-56 (199)
414 cd03020 DsbA_DsbC_DsbG DsbA fa 42.6 1.3E+02 0.0029 24.3 7.2 24 180-203 77-100 (197)
415 cd03056 GST_N_4 GST_N family, 42.1 90 0.002 20.0 5.2 55 78-138 2-60 (73)
416 cd03030 GRX_SH3BGR Glutaredoxi 40.9 1E+02 0.0023 21.6 5.4 51 85-137 9-68 (92)
417 KOG0911 Glutaredoxin-related p 40.3 1.5E+02 0.0032 24.8 6.8 81 164-250 3-89 (227)
418 TIGR00612 ispG_gcpE 1-hydroxy- 39.9 20 0.00043 31.8 1.9 69 73-146 255-335 (346)
419 cd03034 ArsC_ArsC Arsenate Red 39.8 38 0.00083 24.8 3.2 33 78-116 2-34 (112)
420 TIGR00014 arsC arsenate reduct 39.1 40 0.00086 24.8 3.2 33 78-116 2-34 (114)
421 KOG3414 Component of the U4/U6 38.5 1.7E+02 0.0037 22.0 6.6 72 166-240 7-87 (142)
422 COG2077 Tpx Peroxiredoxin [Pos 38.4 56 0.0012 25.4 3.9 89 43-135 17-109 (158)
423 PF02645 DegV: Uncharacterised 36.9 1.5E+02 0.0033 25.7 7.0 99 217-323 14-118 (280)
424 PF09949 DUF2183: Uncharacteri 36.5 1.5E+02 0.0033 21.3 5.7 20 300-319 78-97 (100)
425 PHA02291 hypothetical protein 36.4 36 0.00078 24.4 2.4 24 1-24 1-24 (132)
426 PF09695 YtfJ_HI0045: Bacteria 36.3 1.2E+02 0.0026 23.8 5.5 28 130-157 127-155 (160)
427 COG1393 ArsC Arsenate reductas 35.8 49 0.0011 24.6 3.2 21 77-97 3-23 (117)
428 COG1930 CbiN ABC-type cobalt t 35.6 49 0.0011 23.1 2.9 32 73-107 49-80 (97)
429 TIGR02652 conserved hypothetic 34.7 15 0.00032 27.8 0.3 71 84-179 11-85 (163)
430 PF09654 DUF2396: Protein of u 34.5 15 0.00032 27.8 0.2 71 84-179 8-82 (161)
431 PF09889 DUF2116: Uncharacteri 34.2 41 0.00089 21.5 2.2 8 7-14 41-48 (59)
432 cd03054 GST_N_Metaxin GST_N fa 32.3 1.4E+02 0.0031 19.2 5.7 58 83-158 14-71 (72)
433 COG3011 Predicted thiol-disulf 31.7 2.4E+02 0.0052 21.6 6.6 65 72-138 5-71 (137)
434 cd03017 PRX_BCP Peroxiredoxin 31.3 2.2E+02 0.0048 21.1 6.7 51 208-258 81-137 (140)
435 cd03015 PRX_Typ2cys Peroxiredo 31.1 2.2E+02 0.0047 22.5 6.6 55 209-263 95-156 (173)
436 COG3634 AhpF Alkyl hydroperoxi 30.3 1.9E+02 0.0041 26.2 6.3 81 72-157 115-195 (520)
437 PF08534 Redoxin: Redoxin; In 29.7 2.5E+02 0.0053 21.2 7.4 46 205-250 83-134 (146)
438 COG5494 Predicted thioredoxin/ 29.6 2.9E+02 0.0063 22.9 6.7 73 80-160 16-88 (265)
439 KOG1364 Predicted ubiquitin re 28.5 97 0.0021 27.7 4.2 57 105-161 132-190 (356)
440 PRK13617 psbV cytochrome c-550 28.4 40 0.00086 26.8 1.7 32 52-91 45-76 (170)
441 TIGR02742 TrbC_Ftype type-F co 27.8 2.7E+02 0.0059 21.1 6.1 27 211-240 55-81 (130)
442 cd02970 PRX_like2 Peroxiredoxi 27.5 1.7E+02 0.0038 21.9 5.4 42 283-324 23-68 (149)
443 cd03021 DsbA_GSTK DsbA family, 27.2 80 0.0017 26.0 3.5 38 118-156 170-208 (209)
444 PF03960 ArsC: ArsC family; I 27.1 97 0.0021 22.4 3.6 31 80-116 1-31 (110)
445 TIGR01165 cbiN cobalt transpor 27.0 76 0.0017 22.2 2.7 28 73-103 51-78 (91)
446 PF03190 Thioredox_DsbH: Prote 25.5 2.4E+02 0.0052 22.4 5.6 86 153-241 9-113 (163)
447 PF10865 DUF2703: Domain of un 24.6 1.5E+02 0.0034 22.1 4.2 52 83-139 13-71 (120)
448 KOG2244 Highly conserved prote 24.4 73 0.0016 30.4 2.9 75 61-135 100-185 (786)
449 cd03014 PRX_Atyp2cys Peroxired 24.3 2.4E+02 0.0052 21.1 5.6 40 283-323 26-68 (143)
450 PRK09810 entericidin A; Provis 23.5 1E+02 0.0022 18.1 2.3 6 1-6 1-6 (41)
451 PRK13190 putative peroxiredoxi 23.4 3E+02 0.0065 22.5 6.2 56 209-264 92-154 (202)
452 TIGR01672 AphA HAD superfamily 23.3 2.2E+02 0.0048 24.1 5.5 24 57-80 45-68 (237)
453 cd03018 PRX_AhpE_like Peroxire 23.2 2E+02 0.0043 21.7 4.9 39 284-322 29-71 (149)
454 PRK00522 tpx lipid hydroperoxi 23.2 2.7E+02 0.0059 21.9 5.8 54 283-337 44-100 (167)
455 PHA02151 hypothetical protein 23.2 48 0.001 25.7 1.3 15 72-86 202-216 (217)
456 PF11119 DUF2633: Protein of u 23.1 1E+02 0.0022 19.7 2.5 15 7-21 11-25 (59)
457 cd03053 GST_N_Phi GST_N family 22.7 2.2E+02 0.0049 18.4 4.8 70 77-158 2-75 (76)
458 COG5294 Uncharacterized protei 22.4 1.9E+02 0.0041 21.1 4.1 21 67-87 59-79 (113)
459 PRK13620 psbV cytochrome c-550 22.3 36 0.00079 27.9 0.5 31 52-90 90-120 (215)
460 cd03070 PDI_b_ERp44 PDIb famil 22.3 2.9E+02 0.0062 19.5 5.4 41 280-321 13-53 (91)
461 TIGR01616 nitro_assoc nitrogen 22.1 1.2E+02 0.0026 22.8 3.3 34 76-115 2-35 (126)
462 PRK10853 putative reductase; P 21.8 1.1E+02 0.0023 22.8 2.9 34 77-116 2-35 (118)
463 cd02969 PRX_like1 Peroxiredoxi 21.7 4E+02 0.0086 20.8 8.5 59 180-241 57-120 (171)
464 PRK02898 cobalt transport prot 21.6 1.3E+02 0.0028 21.6 3.1 29 73-104 51-79 (100)
465 PRK10877 protein disulfide iso 21.6 1.4E+02 0.0031 25.1 4.0 41 215-263 190-230 (232)
466 PF15284 PAGK: Phage-encoded v 21.5 1.2E+02 0.0027 19.4 2.6 14 1-14 1-14 (61)
467 PF13743 Thioredoxin_5: Thiore 21.5 73 0.0016 25.5 2.1 37 215-254 135-172 (176)
468 TIGR01655 yxeA_fam conserved h 21.3 79 0.0017 23.3 2.1 12 72-83 65-76 (114)
469 PRK15000 peroxidase; Provision 21.3 2.9E+02 0.0062 22.6 5.7 42 282-323 33-78 (200)
470 PRK10026 arsenate reductase; P 21.0 1.2E+02 0.0026 23.4 3.1 33 77-115 4-36 (141)
471 COG3411 Ferredoxin [Energy pro 21.0 2.2E+02 0.0048 18.5 3.7 29 128-160 17-45 (64)
472 KOG2501 Thioredoxin, nucleored 20.7 2E+02 0.0043 22.6 4.2 31 208-241 96-126 (157)
473 PRK13738 conjugal transfer pil 20.7 1.2E+02 0.0027 25.1 3.3 26 114-139 170-196 (209)
474 cd03061 GST_N_CLIC GST_N famil 20.6 3.1E+02 0.0068 19.2 8.2 67 83-161 20-87 (91)
475 KOG0854 Alkyl hydroperoxide re 20.3 1.6E+02 0.0034 23.6 3.6 44 72-115 30-76 (224)
476 PRK10387 glutaredoxin 2; Provi 20.3 4.4E+02 0.0095 21.2 6.7 72 80-162 4-75 (210)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-43 Score=317.11 Aligned_cols=284 Identities=32% Similarity=0.485 Sum_probs=257.3
Q ss_pred CCCcEEcChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC---CcEEEEEeCcccHhHHHHCCCCCCcEE
Q 019115 55 AKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTL 131 (346)
Q Consensus 55 ~~~v~~l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~i~~~Pt~ 131 (346)
...|..|+.++|+..+..+..++|.||||||+||++++|+++++|..++. .+.+++|||.++.++|.+|+|++|||+
T Consensus 24 ~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTl 103 (493)
T KOG0190|consen 24 EEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTL 103 (493)
T ss_pred ccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeE
Confidence 55899999999999999999999999999999999999999999999877 799999999999999999999999999
Q ss_pred EEEeCCeeeEEeeCCCCHHHHHHHHHHHcCCCceeccChhHHHHhhccCCeEEEEEecCCCCccHHHHHHHhccCCceeE
Q 019115 132 YLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNF 211 (346)
Q Consensus 132 ~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~s~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~a~~~~~~~f 211 (346)
.+|++|+....|.|.++++.|..|+.+..+|++..+.+.++...++.+++..+|+||.+..+.....+..++.+++++.|
T Consensus 104 kiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~~~~~~~a~~l~~d~~F 183 (493)
T KOG0190|consen 104 KIFRNGRSAQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLAESFFDAASKLRDDYKF 183 (493)
T ss_pred EEEecCCcceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCceEEEEEecccccchHHHHHHHHhcccccee
Confidence 99999966799999999999999999999999999999999999999999999999998777773444455689999999
Q ss_pred EEecCHHHHhhcCCCCCCCCCeEEEEecCCCccccCCCCCCHHHHHHHHhccCCCceEeecccchhhhccCCC-cEEEEE
Q 019115 212 YQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPR-KQLWLF 290 (346)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~p~~~~lt~~~~~~~~~~~~-~~~~~f 290 (346)
+++++.++++.++.+... .+.++++++.++....|+|+++.+.|..||..+++|++.++|.++...++.+.. ..+++|
T Consensus 184 ~~ts~~~~~~~~~~~~~~-~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~~~~~~~ 262 (493)
T KOG0190|consen 184 AHTSDSDVAKKLELNTEG-TFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLVTEFTVANNAKIYSSFVKLGLDFF 262 (493)
T ss_pred eccCcHhHHhhccCCCCC-cceEEeccccccchhhcccccCHHHHHHHHHHhcccccceecccccceeeccccccceeEE
Confidence 999999999999987422 455899999888899999999999999999999999999999999999998877 555666
Q ss_pred eeCC--CchHHHHHHHHHHHHhcCceEEEEEECCCcccccchhhhcCCCCCCCc
Q 019115 291 APAY--GSDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPR 342 (346)
Q Consensus 291 ~~~~--~~~~~~~~~~~~a~~~~~~~~f~~vd~~~~~~~~~~~~~~gi~~~~~P 342 (346)
.... ..+..++.++.+|++|+++++|+.+|..++. +.++.||+.....|
T Consensus 263 ~~~~~~~~e~~~~~~~~vAk~f~~~l~Fi~~d~e~~~---~~~~~~Gl~~~~~~ 313 (493)
T KOG0190|consen 263 VFFKCNRFEELRKKFEEVAKKFKGKLRFILIDPESFA---RVLEFFGLEEEQLP 313 (493)
T ss_pred eccccccHHHHHHHHHHHHHhcccceEEEEEChHHhh---HHHHhcCcccccCC
Confidence 5433 6899999999999999999999999888754 68999999988877
No 2
>PTZ00102 disulphide isomerase; Provisional
Probab=100.00 E-value=2.2e-38 Score=297.48 Aligned_cols=273 Identities=24% Similarity=0.388 Sum_probs=234.7
Q ss_pred CCcEEcChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC---CcEEEEEeCcccHhHHHHCCCCCCcEEE
Q 019115 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLY 132 (346)
Q Consensus 56 ~~v~~l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~i~~~Pt~~ 132 (346)
..+.+++.++|+..+.+++.++|.|||+||++|+++.|.|.++++.+++ ++.++.|||+++.++|++|+|.++||++
T Consensus 32 ~~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~ 111 (477)
T PTZ00102 32 EHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIK 111 (477)
T ss_pred CCcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEE
Confidence 4688999999999998899999999999999999999999999988753 6999999999999999999999999999
Q ss_pred EEeCCeeeEEeeCCCCHHHHHHHHHHHcCCCceeccChhHHHHhhccCCeEEEEEecCCCCccHHHHHHHh-ccCCceeE
Q 019115 133 LFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNF 211 (346)
Q Consensus 133 ~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~s~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~f 211 (346)
+|++|+.. .|.|.++.+.+.+|+.+.+++++.++.+.++...+.....+.+++++....+...+.|.++| .+++...|
T Consensus 112 ~~~~g~~~-~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~F 190 (477)
T PTZ00102 112 FFNKGNPV-NYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVADKHREHAKF 190 (477)
T ss_pred EEECCceE-EecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccCCcHHHHHHHHHHHhccccceE
Confidence 99988655 99999999999999999999999999999888887777778888888877777888888887 57777888
Q ss_pred EEecCHHHHhhcCCCCCCCCCeEEEEecCCCccccCCCCCCHHHHHHHHhccCCCceEeecccchhhhccCCCcEEEEEe
Q 019115 212 YQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLFA 291 (346)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~p~~~~lt~~~~~~~~~~~~~~~~~f~ 291 (346)
+...+. ..+.+.+++..+.....|.| .+.++|..||+.+++|++.+++.+++..++.++.+.++++.
T Consensus 191 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~-~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (477)
T PTZ00102 191 FVKKHE------------GKNKIYVLHKDEEGVELFMG-KTKEELEEFVSTESFPLFAEINAENYRRYISSGKDLVWFCG 257 (477)
T ss_pred EEEcCC------------CCCcEEEEecCCCCcccCCC-CCHHHHHHHHHHcCCCceeecCccchHHHhcCCccEEEEec
Confidence 765432 23778888876544444555 48899999999999999999999999999988887776665
Q ss_pred eCCCchHHHHHHHHHHHHhcCceEEEEEECCCcccccchhhhcCCCCCCCccccC
Q 019115 292 PAYGSDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVSSL 346 (346)
Q Consensus 292 ~~~~~~~~~~~~~~~a~~~~~~~~f~~vd~~~~~~~~~~~~~~gi~~~~~P~~~i 346 (346)
..++.+.+.+.++++|+++++++.|+|+|+.++. .++++.+|+.. .|++++
T Consensus 258 ~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~--~~~~~~~gi~~--~P~~~i 308 (477)
T PTZ00102 258 TTEDYDKYKSVVRKVARKLREKYAFVWLDTEQFG--SHAKEHLLIEE--FPGLAY 308 (477)
T ss_pred CHHHHHHHHHHHHHHHHhccCceEEEEEechhcc--hhHHHhcCccc--CceEEE
Confidence 5555677899999999999999999999999754 24788999975 787653
No 3
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=100.00 E-value=1.6e-37 Score=290.89 Aligned_cols=282 Identities=26% Similarity=0.402 Sum_probs=243.8
Q ss_pred CcEEcChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC---CcEEEEEeCcccHhHHHHCCCCCCcEEEE
Q 019115 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLYL 133 (346)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~ 133 (346)
.+..+++++|+..+.++++++|.|||+||++|+++.|.|.++++.+++ ++.++.|||++++++|++|+|.++||+++
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI 81 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence 577899999999999999999999999999999999999999998865 49999999999999999999999999999
Q ss_pred EeCCee-eEEeeCCCCHHHHHHHHHHHcCCCceeccChhHHHHhhccCCeEEEEEecCCCCccHHHHHHHh-ccCCcee-
Q 019115 134 FVAGVR-QFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVN- 210 (346)
Q Consensus 134 ~~~g~~-~~~~~g~~~~~~l~~~i~~~~~~~~~~i~s~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~- 210 (346)
|++|+. +..|.|.++.+.+.+|+.+.+++++.++++.++++.++..++..+|+|+....+.....|.++| .+...+.
T Consensus 82 ~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~a~~~~~~~~~ 161 (462)
T TIGR01130 82 FRNGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDLDSELNDTFLSVAEKLRDVYFF 161 (462)
T ss_pred EeCCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHHHHhhhccce
Confidence 998876 7899999999999999999999999999999999999999999999999876677888898888 4555555
Q ss_pred EEEecCHHHHhhcCCCCCCCCCeEEEEecCCCcc--ccCCCCC--CHHHHHHHHhccCCCceEeecccchhhhccCCCcE
Q 019115 211 FYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKA--TPFRHQF--TRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQ 286 (346)
Q Consensus 211 f~~~~~~~~~~~~~v~~~~~~p~i~~~~~~~~~~--~~y~g~~--~~~~l~~fi~~~~~p~~~~lt~~~~~~~~~~~~~~ 286 (346)
|+.+.+..+++.++... +++.+|+..+... ..|.|+. +.++|..||+.+++|++++++++++..++.++ |.
T Consensus 162 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~-~~ 236 (462)
T TIGR01130 162 FAHSSDVAAFAKLGAFP----DSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESG-PL 236 (462)
T ss_pred EEecCCHHHHhhcCCCC----CcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCC-Cc
Confidence 55566778888888763 7778887654333 4677775 45899999999999999999999999999877 55
Q ss_pred EEEEeeCCC----chHHHHHHHHHHHHhcC-ceEEEEEECCCcccccchhhhcCCCCCCCccccC
Q 019115 287 LWLFAPAYG----SDKVILTFEEVAKALKG-KLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVSSL 346 (346)
Q Consensus 287 ~~~f~~~~~----~~~~~~~~~~~a~~~~~-~~~f~~vd~~~~~~~~~~~~~~gi~~~~~P~~~i 346 (346)
+++|...+. .+.+.+.++++|+++++ ++.|+++|+.++. .+++.+|+...+.|.++|
T Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~~---~~~~~~~~~~~~~P~~vi 298 (462)
T TIGR01130 237 VVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFG---RELEYFGLKAEKFPAVAI 298 (462)
T ss_pred eeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHhH---HHHHHcCCCccCCceEEE
Confidence 555554332 37889999999999997 9999999998754 889999999888998875
No 4
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=100.00 E-value=2.2e-38 Score=259.70 Aligned_cols=278 Identities=20% Similarity=0.314 Sum_probs=235.7
Q ss_pred cChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC-----CcEEEEEeCcccHhHHHHCCCCCCcEEEEEe
Q 019115 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-----EADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (346)
Q Consensus 61 l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~-----~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~ 135 (346)
++.+|++.++..++.++|.|||+||+.++.++|.|+++|..++. ++..+.|||+.+..++.+|.|..|||+.+|+
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 35678888998999999999999999999999999999988754 7999999999999999999999999999999
Q ss_pred CCeeeE-EeeCCCCHHHHHHHHHHHcCCCceeccChhHHHHhhccCCeEEEEEecCCCCccHHHHHHHh-ccCCceeEEE
Q 019115 136 AGVRQF-QFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQ 213 (346)
Q Consensus 136 ~g~~~~-~~~g~~~~~~l~~~i~~~~~~~~~~i~s~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~f~~ 213 (346)
+|.... .|.|.++.+.+.+||++.+..++.+..+.++++......+..+|+||....++.++.+..+| -+++++.|..
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey~~~~kva~~lr~dc~f~V 160 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEYDNLRKVASLLRDDCVFLV 160 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCchHHHHHHHHHHHhhccEEEe
Confidence 997655 79999999999999999999999999999999999887888999999988899999999987 6889999876
Q ss_pred ecCHHHHhhcCCCCCCCCCeEEEEecCCCc-cccCCCCCCH-HHHHHHHhccCCCceEeecccchhhhccCCCcEEEEEe
Q 019115 214 TTSADVAEFFHIHPKSKRPALIFLHLEAGK-ATPFRHQFTR-LAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLFA 291 (346)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~p~i~~~~~~~~~-~~~y~g~~~~-~~l~~fi~~~~~p~~~~lt~~~~~~~~~~~~~~~~~f~ 291 (346)
..... .....-. +.+ +++|+++... -..|.|+++. +.+.+||.+.+.|+|+++|-+|.+++-+.+.|.+|+|.
T Consensus 161 ~~gD~-~~~~~~~---~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLVREiTFeN~EELtEEGlPflILf~ 235 (375)
T KOG0912|consen 161 GFGDL-LKPHEPP---GKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLVREITFENAEELTEEGLPFLILFR 235 (375)
T ss_pred ecccc-ccCCCCC---CCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhhhhhhhccHHHHhhcCCceEEEEe
Confidence 55322 1111111 223 5666655322 2369999866 99999999999999999999999999999999999999
Q ss_pred eCCCchHHHHHHHHHHHHhcC---ceEEEEEECCCcccccchhhhcCCCCCCCccccC
Q 019115 292 PAYGSDKVILTFEEVAKALKG---KLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVSSL 346 (346)
Q Consensus 292 ~~~~~~~~~~~~~~~a~~~~~---~~~f~~vd~~~~~~~~~~~~~~gi~~~~~P~~~i 346 (346)
.+++......--..+++++.+ -++|...||.-+. .-+..+|-+++++|+++|
T Consensus 236 ~kdD~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~f~---hpL~HlgKs~~DLPviaI 290 (375)
T KOG0912|consen 236 KKDDKESEKIFKNAIARELDDETLAINFLTADGKVFK---HPLRHLGKSPDDLPVIAI 290 (375)
T ss_pred cCCcccHHHHHHHHHHHHhhhhhhccceeecCcceec---chHHHhCCCcccCcEEEe
Confidence 988855554444567777754 3999999999865 668999999999999986
No 5
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=100.00 E-value=7.2e-33 Score=227.09 Aligned_cols=246 Identities=19% Similarity=0.210 Sum_probs=192.8
Q ss_pred CCCcEEEEEecCCChhHhhhhHHHHHHHHHccC---CcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCeeeEEeeCCCC
Q 019115 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERT 148 (346)
Q Consensus 72 ~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~ 148 (346)
....|+|.||||||+||+++.|.|.++..++++ .+.++++||...+.++.++||++|||+.++++| ....|.|.++
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd-~a~dYRG~R~ 120 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGD-HAIDYRGGRE 120 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCC-eeeecCCCcc
Confidence 457899999999999999999999999988877 799999999999999999999999999999998 7899999999
Q ss_pred HHHHHHHHHHHcCCCceeccChh-HHHHhhccCCeEEEEEecCCCCccHHHHHHHhccCCceeEEEecCHHHHhhcCCCC
Q 019115 149 RDVISAWVREKMTLGTYSITTTD-EAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHP 227 (346)
Q Consensus 149 ~~~l~~~i~~~~~~~~~~i~s~~-~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~a~~~~~~~f~~~~~~~~~~~~~v~~ 227 (346)
.+.+.+|..+..++-+..+.+-. ++..+-..+.+.+| |+....++..+.|..+|.-.-.+......+++++..++--.
T Consensus 121 Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffV-f~Gtge~PL~d~fidAASe~~~~a~FfSaseeVaPe~~~~k 199 (468)
T KOG4277|consen 121 KDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFV-FFGTGEGPLFDAFIDAASEKFSVARFFSASEEVAPEENDAK 199 (468)
T ss_pred HHHHHHHHHhcccceeeecChhHHHHHHHhhccCceEE-EEeCCCCcHHHHHHHHhhhheeeeeeeccccccCCcccchh
Confidence 99999999998877777665523 33344445555555 67777899999999988433333222333344443333211
Q ss_pred CCCCCeEEEEecCCCccccCCCCCCHHHHHHHHhccCCCceEeecccchhhhccCCCcEEEEEeeCC-------CchHHH
Q 019115 228 KSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLFAPAY-------GSDKVI 300 (346)
Q Consensus 228 ~~~~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~p~~~~lt~~~~~~~~~~~~~~~~~f~~~~-------~~~~~~ 300 (346)
..|++.+|+++ .+..|. +.+.++|.+||++.++|.+-..+..++.++-.+++.+++...+.. +...++
T Consensus 200 --empaV~VFKDe--tf~i~d-e~dd~dLseWinRERf~~fLa~dgflL~EiG~sGKLVaLaVidEkhk~nns~eh~~~~ 274 (468)
T KOG4277|consen 200 --EMPAVAVFKDE--TFEIED-EGDDEDLSEWINRERFPGFLAADGFLLAEIGASGKLVALAVIDEKHKFNNSSEHREFH 274 (468)
T ss_pred --hccceEEEccc--eeEEEe-cCchhHHHHHHhHhhccchhhcccchHHHhCcCCceEEEEEeccccccCCcchhHHHH
Confidence 36999999976 444443 235789999999999999999999999999888886666555432 256788
Q ss_pred HHHHHHHHHhcC------ceEEEEEECCCc
Q 019115 301 LTFEEVAKALKG------KLLHVYVEMNSE 324 (346)
Q Consensus 301 ~~~~~~a~~~~~------~~~f~~vd~~~~ 324 (346)
.+.+++|+++|+ ++.|+|+|+++.
T Consensus 275 ki~eEaakd~Rd~pdfh~dFQF~hlDGnD~ 304 (468)
T KOG4277|consen 275 KIAEEAAKDLRDHPDFHNDFQFAHLDGNDL 304 (468)
T ss_pred HHHHHHHHHHHhChhhhhhceeeccchhHH
Confidence 899999999884 599999999864
No 6
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.97 E-value=6.1e-28 Score=202.65 Aligned_cols=285 Identities=16% Similarity=0.242 Sum_probs=211.6
Q ss_pred CCCcEEcChhcHHHHHcCCCcEEEEEecCCChhHhh-----hhH-HHHHHHHHccC-CcEEEEEeCcccHhHHHHCCCCC
Q 019115 55 AKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKK-----LAP-EFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILA 127 (346)
Q Consensus 55 ~~~v~~l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~-----~~p-~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~ 127 (346)
...+++||.+||.+++++.+..+|+|+.|--..-.. +.. .++-.|+-+.. ++.|+.||..++..+++++|+..
T Consensus 33 kDRVi~LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E 112 (383)
T PF01216_consen 33 KDRVIDLNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEE 112 (383)
T ss_dssp S--CEEE-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--S
T ss_pred ccceEEcchhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccc
Confidence 457999999999999999999999999876432222 112 23334454544 89999999999999999999999
Q ss_pred CcEEEEEeCCeeeEEeeCCCCHHHHHHHHHHHcCCCceeccChhHHHHhhc-cCCeEEEEEecCCCCccHHHHHHHh-cc
Q 019115 128 YPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILT-VESKLVLGFLHDLEGMESEELAAAS-KL 205 (346)
Q Consensus 128 ~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~s~~~~~~~~~-~~~~~~v~f~~~~~~~~~~~~~~~a-~~ 205 (346)
.+++++|.+| .+..|.|.++++.+.+||...+..||..|++..+++.+-. +..+.+|+||.+..+..+..|..+| .+
T Consensus 113 ~~SiyVfkd~-~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~~yk~FeeAAe~F 191 (383)
T PF01216_consen 113 EGSIYVFKDG-EVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSEDSEHYKEFEEAAEHF 191 (383)
T ss_dssp TTEEEEEETT-EEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSHHHHHHHHHHHHC
T ss_pred cCcEEEEECC-cEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCCcHHHHHHHHHHHhh
Confidence 9999999999 6788999999999999999999999999999999988876 4579999999998888999999999 78
Q ss_pred CCceeEEEecCHHHHhhcCCCCCCCCCeEEEEecCCCccccCCCC-CCHHHHHHHHhccCCCceEeecccchhhhccCCC
Q 019115 206 HSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQ-FTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPR 284 (346)
Q Consensus 206 ~~~~~f~~~~~~~~~~~~~v~~~~~~p~i~~~~~~~~~~~~y~g~-~~~~~l~~fi~~~~~p~~~~lt~~~~~~~~~~~~ 284 (346)
++.++|+.+.++.+++++++. ...+-+|++..+.++...|+ .+.++|.+||+.|+.|.++.++++++.+......
T Consensus 192 ~p~IkFfAtfd~~vAk~L~lK----~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rptlrkl~~~~m~e~Wedd~ 267 (383)
T PF01216_consen 192 QPYIKFFATFDKKVAKKLGLK----LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRPTLRKLRPEDMFETWEDDI 267 (383)
T ss_dssp TTTSEEEEE-SHHHHHHHT-S----TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-SEEE--GGGHHHHHHSSS
T ss_pred cCceeEEEEecchhhhhcCcc----ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhchhHhhhCChhhhhhhhcccC
Confidence 999999999999999999997 58899999988788888764 6779999999999999999999999888887766
Q ss_pred --cEEEEEeeCCC--chHHHHHHHHHHHHhcC--ceEEEEEECCCcccc-cchhhhcCCCCCCCcccc
Q 019115 285 --KQLWLFAPAYG--SDKVILTFEEVAKALKG--KLLHVYVEMNSEGVG-RRVSQEFGVSGNAPRVSS 345 (346)
Q Consensus 285 --~~~~~f~~~~~--~~~~~~~~~~~a~~~~~--~~~f~~vd~~~~~~~-~~~~~~~gi~~~~~P~~~ 345 (346)
.+++.|+..++ -.++...++++|+...+ .+.++|+|.++++.- +-+-+.|||+-. .|.|.
T Consensus 268 ~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Idl~-~PqIG 334 (383)
T PF01216_consen 268 DGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGIDLS-RPQIG 334 (383)
T ss_dssp SSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-TT-S-EEE
T ss_pred CCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCcccc-CCcee
Confidence 77778887766 56889999999999875 499999999987511 123467888765 47664
No 7
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.93 E-value=1.6e-25 Score=165.63 Aligned_cols=102 Identities=17% Similarity=0.311 Sum_probs=95.0
Q ss_pred CCCcEEcChhcHHHH---HcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHH-HHCCCCCCcE
Q 019115 55 AKDVVSLNGKNFSEF---MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA-KEYNILAYPT 130 (346)
Q Consensus 55 ~~~v~~l~~~~~~~~---~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~-~~~~i~~~Pt 130 (346)
.+.+++|++++|++. +.++++++|.||||||++|+.+.|.|+++++++++.+.|++|||+++.++| ++|+|.++||
T Consensus 8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PT 87 (113)
T cd03006 8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPV 87 (113)
T ss_pred CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCE
Confidence 457999999999986 578899999999999999999999999999999888999999999999999 5899999999
Q ss_pred EEEEeCCeeeEEeeCCCCHHHHHHHH
Q 019115 131 LYLFVAGVRQFQFFGERTRDVISAWV 156 (346)
Q Consensus 131 ~~~~~~g~~~~~~~g~~~~~~l~~~i 156 (346)
+++|++|+...+|.|.++.+.|..|+
T Consensus 88 l~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 88 IHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred EEEEECCccceEEeCCCCHHHHHhhC
Confidence 99999998889999999999998873
No 8
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.92 E-value=9.9e-25 Score=160.39 Aligned_cols=99 Identities=23% Similarity=0.524 Sum_probs=94.3
Q ss_pred CcEEcChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeC
Q 019115 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136 (346)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 136 (346)
.+.+++.++|++.+.++++++|.|||+||++|+++.|.|+++++++++.+.|+.|||++++.+|++++|+++||+++|++
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 81 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPS 81 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcC
Confidence 57789999999999888999999999999999999999999999998889999999999999999999999999999999
Q ss_pred CeeeEEeeCCCCHHHHHHH
Q 019115 137 GVRQFQFFGERTRDVISAW 155 (346)
Q Consensus 137 g~~~~~~~g~~~~~~l~~~ 155 (346)
|+.+.+|.|.++.+.|.+|
T Consensus 82 g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 82 GMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred CCCcccCCCCCCHHHHHhh
Confidence 9888899999999999887
No 9
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.8e-24 Score=160.56 Aligned_cols=105 Identities=24% Similarity=0.412 Sum_probs=97.8
Q ss_pred CcEEcChhcHHH-HHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEe
Q 019115 57 DVVSLNGKNFSE-FMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (346)
Q Consensus 57 ~v~~l~~~~~~~-~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~ 135 (346)
.+..++..+|+. .++++.||+|+|||+||+||+.+.|.++++++++.+.+.+++||.|++.+++.+|+|..+||+++|+
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfk 123 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFK 123 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEE
Confidence 455678888985 5578899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeEEeeCCCCHHHHHHHHHHHcC
Q 019115 136 AGVRQFQFFGERTRDVISAWVREKMT 161 (346)
Q Consensus 136 ~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (346)
||+...++.|..+.+.+.++|++.+.
T Consensus 124 nGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 124 NGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred CCEEeeeecccCCHHHHHHHHHHHhc
Confidence 99999999999999999999998763
No 10
>PRK10996 thioredoxin 2; Provisional
Probab=99.91 E-value=4.3e-23 Score=159.86 Aligned_cols=134 Identities=22% Similarity=0.413 Sum_probs=121.2
Q ss_pred CcccccccCchhhhhccCCCCCCCCCCcCCCcEEcChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCc
Q 019115 27 QSHEDLKAEPDELELTNLNNNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEA 106 (346)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v 106 (346)
.+|+..+++|.........++..........+.+++.++|+..+.++++++|+|||+||++|+.+.|.+.++++++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v 85 (139)
T PRK10996 6 TSCQAINRLPDERIEDAAKCGRCGHDLFDGEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKV 85 (139)
T ss_pred CCCCCcCCCCCccccCCCcCCCCCCccCCCCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCe
Confidence 35666777887777777788877666667788899999999999889999999999999999999999999999988889
Q ss_pred EEEEEeCcccHhHHHHCCCCCCcEEEEEeCCeeeEEeeCCCCHHHHHHHHHHHc
Q 019115 107 DLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKM 160 (346)
Q Consensus 107 ~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (346)
.++.||++++++++++|+|+++||+++|++|+.+.++.|..+.+.+.+|+++.+
T Consensus 86 ~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 86 RFVKVNTEAERELSARFRIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEEEEeCCCCHHHHHhcCCCccCEEEEEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999998753
No 11
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.91 E-value=4.6e-23 Score=152.35 Aligned_cols=102 Identities=28% Similarity=0.566 Sum_probs=97.4
Q ss_pred cEEcChhcHHHHHcC-CCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeC
Q 019115 58 VVSLNGKNFSEFMGK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136 (346)
Q Consensus 58 v~~l~~~~~~~~~~~-~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 136 (346)
|..+|+++|++.+.+ +++++|.||++||++|+.+.|.|.++++++++++.++.|||++++++|++|+|.++||+++|++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~ 80 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKN 80 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEET
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEEC
Confidence 467899999999976 8999999999999999999999999999998899999999999999999999999999999999
Q ss_pred CeeeEEeeCCCCHHHHHHHHHHH
Q 019115 137 GVRQFQFFGERTRDVISAWVREK 159 (346)
Q Consensus 137 g~~~~~~~g~~~~~~l~~~i~~~ 159 (346)
|+...+|.|.++.+.|.+||+++
T Consensus 81 g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 81 GKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp TEEEEEEESSSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCHHHHHHHHHcC
Confidence 99999999999999999999875
No 12
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.90 E-value=2e-23 Score=154.41 Aligned_cols=100 Identities=31% Similarity=0.544 Sum_probs=92.3
Q ss_pred CcEEcChhcHHHHH-cCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEe
Q 019115 57 DVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (346)
Q Consensus 57 ~v~~l~~~~~~~~~-~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~ 135 (346)
.+.+++.++|++.+ .++++++|.|||+||++|+++.|.|+++++++++.+.++.|||++++++|++++|+++||+++|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 81 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYP 81 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEc
Confidence 56789999999876 55789999999999999999999999999999888999999999999999999999999999999
Q ss_pred CC-eeeEEeeCCCC-HHHHHHHH
Q 019115 136 AG-VRQFQFFGERT-RDVISAWV 156 (346)
Q Consensus 136 ~g-~~~~~~~g~~~-~~~l~~~i 156 (346)
+| +...+|.|..+ .++|.+|+
T Consensus 82 ~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 82 GNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred CCCCCceEccCCCCCHHHHHhhC
Confidence 77 88999999987 99998875
No 13
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.90 E-value=4.2e-23 Score=153.55 Aligned_cols=105 Identities=16% Similarity=0.209 Sum_probs=94.3
Q ss_pred CCCcEEcChhcHHHHHcC-CCcEEEEEecCCChh--Hh--hhhHHHHHHHHHc--cCCcEEEEEeCcccHhHHHHCCCCC
Q 019115 55 AKDVVSLNGKNFSEFMGK-NRNVMVMFYANWCYW--SK--KLAPEFAAAAKML--KGEADLVMVDAYLEKDLAKEYNILA 127 (346)
Q Consensus 55 ~~~v~~l~~~~~~~~~~~-~~~~~v~F~a~wC~~--C~--~~~p~~~~~~~~~--~~~v~~~~v~~~~~~~~~~~~~i~~ 127 (346)
...+..||++||++.+.+ +.++++.|||+||++ |+ .+.|.+.+++.++ ++++.|++||+++++++|++|||++
T Consensus 8 ~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~ 87 (120)
T cd03065 8 KDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDE 87 (120)
T ss_pred CcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcc
Confidence 347889999999987754 568889999999977 99 8889999999988 6689999999999999999999999
Q ss_pred CcEEEEEeCCeeeEEeeCCCCHHHHHHHHHHHc
Q 019115 128 YPTLYLFVAGVRQFQFFGERTRDVISAWVREKM 160 (346)
Q Consensus 128 ~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (346)
+||+++|++|+.+. |.|.++.+.+.+||.+..
T Consensus 88 iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 88 EDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 99999999998665 999999999999998764
No 14
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.90 E-value=2.9e-23 Score=154.49 Aligned_cols=100 Identities=35% Similarity=0.621 Sum_probs=92.0
Q ss_pred CcEEcChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC------CcEEEEEeCcccHhHHHHCCCCCCcE
Q 019115 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG------EADLVMVDAYLEKDLAKEYNILAYPT 130 (346)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~------~v~~~~v~~~~~~~~~~~~~i~~~Pt 130 (346)
.+.++++++|++.+..+++++|.|||+||++|+++.|.|+++++.+++ .+.++.|||++++++|++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt 81 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPT 81 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCE
Confidence 578899999999998899999999999999999999999999987642 48999999999999999999999999
Q ss_pred EEEEeCCe-eeEEeeCCCCHHHHHHHH
Q 019115 131 LYLFVAGV-RQFQFFGERTRDVISAWV 156 (346)
Q Consensus 131 ~~~~~~g~-~~~~~~g~~~~~~l~~~i 156 (346)
+++|++|+ ....|.|.++.+.|.+||
T Consensus 82 l~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 82 LKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 99999997 458899999999999885
No 15
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.4e-22 Score=181.52 Aligned_cols=257 Identities=21% Similarity=0.333 Sum_probs=184.9
Q ss_pred HHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCeeeEEeeC
Q 019115 66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFG 145 (346)
Q Consensus 66 ~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g 145 (346)
.......+++++|.||+|||++|+++.|+|.++++.+++.+.++.|||+++.++|++|+|+++||+.+|..|..+..|.|
T Consensus 40 ~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~ 119 (383)
T KOG0191|consen 40 FDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSG 119 (383)
T ss_pred HHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceeeccC
Confidence 33455778999999999999999999999999999999899999999999999999999999999999998866889999
Q ss_pred CCCHHHHHHHHHHHcCCCceecc-------ChhHHHH-hhccCCeEEEEEecCCCCc---cHHHHHHHhc-c--CCceeE
Q 019115 146 ERTRDVISAWVREKMTLGTYSIT-------TTDEAER-ILTVESKLVLGFLHDLEGM---ESEELAAASK-L--HSDVNF 211 (346)
Q Consensus 146 ~~~~~~l~~~i~~~~~~~~~~i~-------s~~~~~~-~~~~~~~~~v~f~~~~~~~---~~~~~~~~a~-~--~~~~~f 211 (346)
..+.+.+.+|+.+.+.+.+.... ....+.. ..+.+..++|.||.+||.. ....+.+++. + ...+.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~ 199 (383)
T KOG0191|consen 120 PRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVEL 199 (383)
T ss_pred cccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEE
Confidence 99999999999998865443322 1233333 3345778999999999986 4455666663 3 355556
Q ss_pred EEec---CHHHHhhcCCCCCCCCCeEEEEecCCCccccCCCCCCHHHHHHHHhccCCCc-----eEeecccc-hhhhccC
Q 019115 212 YQTT---SADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPL-----VVTLTIHN-AQFVFQD 282 (346)
Q Consensus 212 ~~~~---~~~~~~~~~v~~~~~~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~p~-----~~~lt~~~-~~~~~~~ 282 (346)
+... ...++..+++. ++|++.+|+++......|.|.++.+.|.+|+++...+. +.+..... ....+..
T Consensus 200 ~~~d~~~~~~~~~~~~v~---~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d 276 (383)
T KOG0191|consen 200 GKIDATVHKSLASRLEVR---GYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPEPELKEIEDKDTFSPTFLD 276 (383)
T ss_pred EeeccchHHHHhhhhccc---CCceEEEecCCCcccccccccccHHHHHHHHHhhcCCCCCCcccccccCccccccchhh
Confidence 5443 67899999998 59999999988653566678899999999999766552 22222221 1111111
Q ss_pred -------CC----cEEEEEeeCCC-chHHHHHHHHHHHH---hcCceEEEEEECCCcc
Q 019115 283 -------PR----KQLWLFAPAYG-SDKVILTFEEVAKA---LKGKLLHVYVEMNSEG 325 (346)
Q Consensus 283 -------~~----~~~~~f~~~~~-~~~~~~~~~~~a~~---~~~~~~f~~vd~~~~~ 325 (346)
.. ..+-++.++.. .......+...|.. ....+.+..+|+....
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 334 (383)
T KOG0191|consen 277 TAEFLDSLEKKKNKFVKFYAPWCGHCGGFAPVYEDKAELGYPDLSKIKAAKLDCALLK 334 (383)
T ss_pred hhhhhhhhHHhhhhHhhhhcchhhcccccchhHHHHHhccccccccceeecccccccc
Confidence 00 11122323322 44555566666666 3345788888777643
No 16
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.89 E-value=3.7e-22 Score=164.93 Aligned_cols=107 Identities=35% Similarity=0.548 Sum_probs=97.8
Q ss_pred CCCcEEcChhcHHHHHcC-----CCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCc
Q 019115 55 AKDVVSLNGKNFSEFMGK-----NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYP 129 (346)
Q Consensus 55 ~~~v~~l~~~~~~~~~~~-----~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~P 129 (346)
...+.++|+++|++.+.. +++++|+|||+||++|+++.|.|+++++++++.+.++.|||+++++++++|+|+++|
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~P 108 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYP 108 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCC
Confidence 347899999999987742 579999999999999999999999999999988999999999999999999999999
Q ss_pred EEEEEeCCeeeEEeeCCCCHHHHHHHHHHHcC
Q 019115 130 TLYLFVAGVRQFQFFGERTRDVISAWVREKMT 161 (346)
Q Consensus 130 t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (346)
|+++|++|+.+..+.|.++.+++.+|+.+...
T Consensus 109 Tl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 109 TLLLFDKGKMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred EEEEEECCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 99999999777777788999999999988863
No 17
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.89 E-value=1.9e-22 Score=148.30 Aligned_cols=99 Identities=27% Similarity=0.503 Sum_probs=90.2
Q ss_pred CcEEcChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcccHhHHHHCCCCCCcEEEEEe
Q 019115 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (346)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~ 135 (346)
.+.++++++|++.+. ++ ++|+|||+||++|+++.|.|+++++.+++ ++.++.|||++++.++++|+|+++||++++.
T Consensus 2 ~v~~l~~~~f~~~~~-~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 79 (101)
T cd02994 2 NVVELTDSNWTLVLE-GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAK 79 (101)
T ss_pred ceEEcChhhHHHHhC-CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeC
Confidence 578899999998774 43 89999999999999999999999998765 7999999999999999999999999999999
Q ss_pred CCeeeEEeeCCCCHHHHHHHHHH
Q 019115 136 AGVRQFQFFGERTRDVISAWVRE 158 (346)
Q Consensus 136 ~g~~~~~~~g~~~~~~l~~~i~~ 158 (346)
+|+ +.+|.|.++.+.|.+|+++
T Consensus 80 ~g~-~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 80 DGV-FRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred CCC-EEEecCCCCHHHHHHHHhC
Confidence 996 5889999999999999863
No 18
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.6e-22 Score=168.17 Aligned_cols=107 Identities=23% Similarity=0.423 Sum_probs=100.7
Q ss_pred CCcEEcChhcHHHHH---cCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEE
Q 019115 56 KDVVSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY 132 (346)
Q Consensus 56 ~~v~~l~~~~~~~~~---~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~ 132 (346)
..+.++|..||+..+ ...+||+|+||||||++|+.+.|.+++++.++++++.+++||||+++.++.+|||+++||++
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~ 102 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVY 102 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEE
Confidence 359999999999765 33469999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeeeEEeeCCCCHHHHHHHHHHHcCC
Q 019115 133 LFVAGVRQFQFFGERTRDVISAWVREKMTL 162 (346)
Q Consensus 133 ~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~ 162 (346)
+|.+|+.+..|.|....+.+.+|+.++++.
T Consensus 103 af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 103 AFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 999999999999999999999999999866
No 19
>PHA02278 thioredoxin-like protein
Probab=99.88 E-value=4.5e-22 Score=144.82 Aligned_cols=93 Identities=13% Similarity=0.151 Sum_probs=84.5
Q ss_pred hhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCccc----HhHHHHCCCCCCcEEEEEeCCe
Q 019115 63 GKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE----KDLAKEYNILAYPTLYLFVAGV 138 (346)
Q Consensus 63 ~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~----~~~~~~~~i~~~Pt~~~~~~g~ 138 (346)
.++|.+.+.++++++|+|||+||+||+.+.|.++++++++..++.++.||++.+ ++++++|+|.++||+++|++|+
T Consensus 4 ~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~ 83 (103)
T PHA02278 4 LVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQ 83 (103)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCE
Confidence 467888888899999999999999999999999999988655678999999986 6899999999999999999999
Q ss_pred eeEEeeCCCCHHHHHHH
Q 019115 139 RQFQFFGERTRDVISAW 155 (346)
Q Consensus 139 ~~~~~~g~~~~~~l~~~ 155 (346)
.+.++.|..+.+.+.++
T Consensus 84 ~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 84 LVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEEEEeCCCCHHHHHhh
Confidence 99999999999888765
No 20
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.88 E-value=2.6e-22 Score=146.79 Aligned_cols=90 Identities=19% Similarity=0.234 Sum_probs=81.0
Q ss_pred hhcHHHHHc--CCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCeee
Q 019115 63 GKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ 140 (346)
Q Consensus 63 ~~~~~~~~~--~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 140 (346)
.++|+..+. .+++++|.|||+||+||+.+.|.++++++++++.+.|++||++++++++++|+|.++||+++|++|+.+
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEE
Confidence 456777674 578999999999999999999999999999987889999999999999999999999999999999999
Q ss_pred EEeeCCCCHHHH
Q 019115 141 FQFFGERTRDVI 152 (346)
Q Consensus 141 ~~~~g~~~~~~l 152 (346)
.+..|..+...|
T Consensus 82 ~~~~G~~~~~~~ 93 (114)
T cd02954 82 KIDLGTGNNNKI 93 (114)
T ss_pred EEEcCCCCCceE
Confidence 888887665544
No 21
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.88 E-value=5.2e-21 Score=159.86 Aligned_cols=182 Identities=13% Similarity=0.164 Sum_probs=137.8
Q ss_pred CCcEEEEEec---CCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCeee-EEeeCCC
Q 019115 73 NRNVMVMFYA---NWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ-FQFFGER 147 (346)
Q Consensus 73 ~~~~~v~F~a---~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~-~~~~g~~ 147 (346)
+...++.|++ +||++|+.+.|.++++++++.+ .+.++.+|.+++++++++|+|.++||+++|++|+.. .++.|..
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~ 98 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIP 98 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecC
Confidence 4455777888 9999999999999999999864 456777777799999999999999999999999876 4899999
Q ss_pred CHHHHHHHHHHHcC--CCceeccChhHHHHhhc-cCCeEEEEEecCCCCccH---HHHHHHhccCCceeEEE---ecCHH
Q 019115 148 TRDVISAWVREKMT--LGTYSITTTDEAERILT-VESKLVLGFLHDLEGMES---EELAAASKLHSDVNFYQ---TTSAD 218 (346)
Q Consensus 148 ~~~~l~~~i~~~~~--~~~~~i~s~~~~~~~~~-~~~~~~v~f~~~~~~~~~---~~~~~~a~~~~~~~f~~---~~~~~ 218 (346)
+.+++.+||+..+. .....+ +.+..+.+.. +.++.++.|+.+||.+.. +.+..++...+++.+.. ..+++
T Consensus 99 ~~~~l~~~i~~~~~~~~~~~~L-~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~ 177 (215)
T TIGR02187 99 AGYEFAALIEDIVRVSQGEPGL-SEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPD 177 (215)
T ss_pred CHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHH
Confidence 99999999988852 222233 3333444333 345566669999999844 33444543345666654 36788
Q ss_pred HHhhcCCCCCCCCCeEEEEecCCCccccCCCCCCHHHHHHHHhc
Q 019115 219 VAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTH 262 (346)
Q Consensus 219 ~~~~~~v~~~~~~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~ 262 (346)
+++.+++. +.|++++++.+ . .+.|....+++.+||.+
T Consensus 178 ~~~~~~V~---~vPtl~i~~~~--~--~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 178 LAEKYGVM---SVPKIVINKGV--E--EFVGAYPEEQFLEYILS 214 (215)
T ss_pred HHHHhCCc---cCCEEEEecCC--E--EEECCCCHHHHHHHHHh
Confidence 99999998 59999998654 2 28888888999999864
No 22
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.88 E-value=4.6e-22 Score=148.25 Aligned_cols=99 Identities=17% Similarity=0.338 Sum_probs=90.3
Q ss_pred EcChhcHHHHH---cCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcccHhHHHHCCCCCCcEEEEEe
Q 019115 60 SLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (346)
Q Consensus 60 ~l~~~~~~~~~---~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~ 135 (346)
+++.++|.+.+ ..+++++|+|||+||++|+.+.|.|+++++++++ ++.++.|||++++.++++++|+++||+++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~ 87 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGII 87 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEE
Confidence 56778887544 3679999999999999999999999999999976 6999999999999999999999999999999
Q ss_pred CCeeeEEeeCCCCHHHHHHHHHH
Q 019115 136 AGVRQFQFFGERTRDVISAWVRE 158 (346)
Q Consensus 136 ~g~~~~~~~g~~~~~~l~~~i~~ 158 (346)
+|+.+..+.|..+.+.|.+||++
T Consensus 88 ~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 88 NGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred CCEEEEEecCCCCHHHHHHHHhc
Confidence 99888888999999999999975
No 23
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.88 E-value=4.9e-22 Score=146.51 Aligned_cols=98 Identities=32% Similarity=0.619 Sum_probs=90.9
Q ss_pred cEEcChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC---CcEEEEEeCcccHhHHHHCCCCCCcEEEEE
Q 019115 58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLYLF 134 (346)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~ 134 (346)
+..+++++|+..+.++ +++|+|||+||++|+.+.|.++++++++++ ++.++.|||++++.+|++|+|.++||+++|
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 80 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF 80 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE
Confidence 5688999999988665 599999999999999999999999999976 799999999999999999999999999999
Q ss_pred eCCeeeEEeeCCCCHHHHHHHH
Q 019115 135 VAGVRQFQFFGERTRDVISAWV 156 (346)
Q Consensus 135 ~~g~~~~~~~g~~~~~~l~~~i 156 (346)
++|+.+.+|.|.++.+.|.+||
T Consensus 81 ~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 81 KDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred eCCCeeeEeeCCCCHHHHHhhC
Confidence 9998888999999999998875
No 24
>PRK09381 trxA thioredoxin; Provisional
Probab=99.88 E-value=1.5e-21 Score=145.52 Aligned_cols=106 Identities=21% Similarity=0.406 Sum_probs=98.2
Q ss_pred CCCcEEcChhcHHHH-HcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEE
Q 019115 55 AKDVVSLNGKNFSEF-MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYL 133 (346)
Q Consensus 55 ~~~v~~l~~~~~~~~-~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~ 133 (346)
++.+.++++++|++. +..+++++|+||++||++|+.+.|.++++++++++++.++.+|++.++.++++|+|+++||+++
T Consensus 2 ~~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 81 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL 81 (109)
T ss_pred CCcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEE
Confidence 457889999999964 5668999999999999999999999999999998889999999999999999999999999999
Q ss_pred EeCCeeeEEeeCCCCHHHHHHHHHHHc
Q 019115 134 FVAGVRQFQFFGERTRDVISAWVREKM 160 (346)
Q Consensus 134 ~~~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (346)
|++|+...++.|..+.+.|..++.+.+
T Consensus 82 ~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 82 FKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 999988889999999999999998765
No 25
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.87 E-value=8.2e-22 Score=147.14 Aligned_cols=99 Identities=36% Similarity=0.589 Sum_probs=90.8
Q ss_pred cEEcChhcHHHHH-cCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcc--cHhHHHHCCCCCCcEEEEE
Q 019115 58 VVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL--EKDLAKEYNILAYPTLYLF 134 (346)
Q Consensus 58 v~~l~~~~~~~~~-~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~ 134 (346)
+.++++++|++.+ ..+++++|.|||+||++|+++.|.++++++.+++.+.++.|||++ ++++|++|+|+++||+++|
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~ 81 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVF 81 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEE
Confidence 5789999999877 457789999999999999999999999999998889999999998 8899999999999999999
Q ss_pred eCCe-----eeEEeeCCCCHHHHHHHH
Q 019115 135 VAGV-----RQFQFFGERTRDVISAWV 156 (346)
Q Consensus 135 ~~g~-----~~~~~~g~~~~~~l~~~i 156 (346)
++|+ ....|.|.++.+.+.+||
T Consensus 82 ~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 82 RPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred eCCCcccccccccccCccCHHHHHHHh
Confidence 9774 467899999999999997
No 26
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.87 E-value=1.9e-21 Score=141.63 Aligned_cols=93 Identities=27% Similarity=0.409 Sum_probs=85.2
Q ss_pred cHHHHH-cC-CCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCeeeEE
Q 019115 65 NFSEFM-GK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQ 142 (346)
Q Consensus 65 ~~~~~~-~~-~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~ 142 (346)
+|++.+ .. +++++|+|||+||++|+++.|.+.++++.+++.+.++.||++++++++++|+|.++||+++|++|+...+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~ 81 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDG 81 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeee
Confidence 566555 33 6799999999999999999999999999998889999999999999999999999999999999988889
Q ss_pred eeCCCCHHHHHHHHH
Q 019115 143 FFGERTRDVISAWVR 157 (346)
Q Consensus 143 ~~g~~~~~~l~~~i~ 157 (346)
+.|..+.+.|..|++
T Consensus 82 ~~g~~~~~~l~~~l~ 96 (96)
T cd02956 82 FQGAQPEEQLRQMLD 96 (96)
T ss_pred ecCCCCHHHHHHHhC
Confidence 999999999998873
No 27
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.87 E-value=1.5e-21 Score=142.28 Aligned_cols=84 Identities=26% Similarity=0.626 Sum_probs=79.0
Q ss_pred cCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCc-ccHhHHHHCCCCCCcEEEEEeCCeeeEEeeCCCCH
Q 019115 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY-LEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTR 149 (346)
Q Consensus 71 ~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~-~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~ 149 (346)
.++++++|+|||+||++|+++.|.|++++++++ ++.++.||++ ++++++++|+|.++||+++|++| ...+|.|.++.
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~-~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~~ 93 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFP-QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRTL 93 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc-cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCCH
Confidence 478999999999999999999999999999987 5889999999 88999999999999999999999 88999999999
Q ss_pred HHHHHHH
Q 019115 150 DVISAWV 156 (346)
Q Consensus 150 ~~l~~~i 156 (346)
+.|.+|+
T Consensus 94 ~~l~~f~ 100 (100)
T cd02999 94 DSLAAFY 100 (100)
T ss_pred HHHHhhC
Confidence 9999885
No 28
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.86 E-value=3.4e-21 Score=142.57 Aligned_cols=99 Identities=40% Similarity=0.694 Sum_probs=92.2
Q ss_pred cEEcChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHcc--CCcEEEEEeCcc--cHhHHHHCCCCCCcEEEE
Q 019115 58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLK--GEADLVMVDAYL--EKDLAKEYNILAYPTLYL 133 (346)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~--~~v~~~~v~~~~--~~~~~~~~~i~~~Pt~~~ 133 (346)
+..+++.+|+..+.++++++|+|||+||++|+++.|.+.++++.++ +.+.++.+||+. ++.++++++|+++||+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~ 81 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKY 81 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEE
Confidence 5678899999999888999999999999999999999999999987 478999999998 999999999999999999
Q ss_pred EeCCeeeEEeeCCCCHHHHHHHH
Q 019115 134 FVAGVRQFQFFGERTRDVISAWV 156 (346)
Q Consensus 134 ~~~g~~~~~~~g~~~~~~l~~~i 156 (346)
|++|+.+..|.|..+.+.+.+|+
T Consensus 82 ~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 82 FENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EeCCCeeEEeCCCCCHHHHHhhC
Confidence 99998889999999999998875
No 29
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.86 E-value=6.3e-21 Score=140.19 Aligned_cols=94 Identities=17% Similarity=0.223 Sum_probs=81.4
Q ss_pred ChhcHHHHHc--CCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccH---hHHHHCCCCCCcEEEEEeC
Q 019115 62 NGKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK---DLAKEYNILAYPTLYLFVA 136 (346)
Q Consensus 62 ~~~~~~~~~~--~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~---~~~~~~~i~~~Pt~~~~~~ 136 (346)
+.++|++.+. ++++++|+|||+||++|+.+.|.++++++++ +++.|+.||++++. +++++|+|+++||+++|++
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 80 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD 80 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence 3567777774 3899999999999999999999999999999 57999999999874 8999999999999999999
Q ss_pred CeeeEEeeCCCCHHHHHHHHH
Q 019115 137 GVRQFQFFGERTRDVISAWVR 157 (346)
Q Consensus 137 g~~~~~~~g~~~~~~l~~~i~ 157 (346)
|+.+.++.|.. .+++.+.+.
T Consensus 81 G~~v~~~~G~~-~~~l~~~~~ 100 (103)
T cd02985 81 GEKIHEEEGIG-PDELIGDVL 100 (103)
T ss_pred CeEEEEEeCCC-HHHHHHHHH
Confidence 99999999954 556665554
No 30
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.86 E-value=6.7e-21 Score=139.88 Aligned_cols=96 Identities=19% Similarity=0.272 Sum_probs=87.3
Q ss_pred cChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCee
Q 019115 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR 139 (346)
Q Consensus 61 l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 139 (346)
-|.++|+..+.++++++|+|||+||++|+.+.|.++++++++++ .+.|+.+|++ +++++++|+|+++||+++|++|+.
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCEE
Confidence 36788999888899999999999999999999999999999986 5889999999 789999999999999999999988
Q ss_pred eEEeeCCCCHHHHHHHHHH
Q 019115 140 QFQFFGERTRDVISAWVRE 158 (346)
Q Consensus 140 ~~~~~g~~~~~~l~~~i~~ 158 (346)
+.+..|. +.+.+.++|.+
T Consensus 84 ~~~~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 84 VAVIRGA-NAPLLNKTITE 101 (102)
T ss_pred EEEEecC-ChHHHHHHHhh
Confidence 8888885 77888888864
No 31
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.86 E-value=6.9e-21 Score=140.63 Aligned_cols=99 Identities=37% Similarity=0.577 Sum_probs=90.9
Q ss_pred cEEcChhcHHHHHc-CCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeC
Q 019115 58 VVSLNGKNFSEFMG-KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136 (346)
Q Consensus 58 v~~l~~~~~~~~~~-~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 136 (346)
+.++++++|++.+. .+++++|.||++||++|+++.|.|.++++++.+.+.++.+||+++++++++|+|+++|++++|++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~ 81 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGA 81 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECC
Confidence 56889999998874 45669999999999999999999999999998889999999999999999999999999999998
Q ss_pred C-eeeEEeeCCCCHHHHHHHH
Q 019115 137 G-VRQFQFFGERTRDVISAWV 156 (346)
Q Consensus 137 g-~~~~~~~g~~~~~~l~~~i 156 (346)
| +....|.|.++.+.|.+|+
T Consensus 82 ~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 82 GKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCcceeecCCCCCHHHHHHHh
Confidence 7 5677899999999999987
No 32
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.86 E-value=5.8e-21 Score=140.78 Aligned_cols=99 Identities=40% Similarity=0.702 Sum_probs=92.3
Q ss_pred cChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC--CcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCe
Q 019115 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV 138 (346)
Q Consensus 61 l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~--~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 138 (346)
|++++|++.+.++++++|+||++||++|+++.|.|+++++.+++ ++.++.+||+++++++++|+|+++|++++|++|+
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence 57889998888899999999999999999999999999999987 6999999999999999999999999999999775
Q ss_pred eeEEeeCCCCHHHHHHHHHHH
Q 019115 139 RQFQFFGERTRDVISAWVREK 159 (346)
Q Consensus 139 ~~~~~~g~~~~~~l~~~i~~~ 159 (346)
....|.|..+.+.|..||.++
T Consensus 81 ~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 81 KPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred cceeecCCCCHHHHHHHHHhc
Confidence 588999999999999999875
No 33
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.85 E-value=5.5e-21 Score=140.24 Aligned_cols=99 Identities=23% Similarity=0.375 Sum_probs=87.4
Q ss_pred CcEEcChhcHHHHHcCCCcEEEEEec--CCCh---hHhhhhHHHHHHHHHccCCcEEEEEeC-----cccHhHHHHCCCC
Q 019115 57 DVVSLNGKNFSEFMGKNRNVMVMFYA--NWCY---WSKKLAPEFAAAAKMLKGEADLVMVDA-----YLEKDLAKEYNIL 126 (346)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~~v~F~a--~wC~---~C~~~~p~~~~~~~~~~~~v~~~~v~~-----~~~~~~~~~~~i~ 126 (346)
.+++||..||++.+.+++.+||.||| |||+ +|++++|++.+.+. .+.+++||| .++.++|++|+|+
T Consensus 2 g~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y~I~ 77 (116)
T cd03007 2 GCVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERYKLD 77 (116)
T ss_pred CeeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHhCCC
Confidence 46789999999999999999999999 9999 88888877776654 488999999 4678899999999
Q ss_pred --CCcEEEEEeCCe--eeEEeeCC-CCHHHHHHHHHHH
Q 019115 127 --AYPTLYLFVAGV--RQFQFFGE-RTRDVISAWVREK 159 (346)
Q Consensus 127 --~~Pt~~~~~~g~--~~~~~~g~-~~~~~l~~~i~~~ 159 (346)
++||+++|++|. ....|.|. ++.+.|.+|+.++
T Consensus 78 ~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 78 KESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred cCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999999999884 56789997 9999999999875
No 34
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.85 E-value=4e-20 Score=143.73 Aligned_cols=90 Identities=19% Similarity=0.273 Sum_probs=82.9
Q ss_pred CCcEEcChhcHHHHHc--CCCcEEEEEecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcccHhHHHHCCCCC-----
Q 019115 56 KDVVSLNGKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILA----- 127 (346)
Q Consensus 56 ~~v~~l~~~~~~~~~~--~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~----- 127 (346)
..+.++++++|++.+. ++++++|+|||+||++|+++.|.++++++++++ ++.|++||++++++++++|+|.+
T Consensus 28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~ 107 (152)
T cd02962 28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSK 107 (152)
T ss_pred CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcC
Confidence 4788899999998773 357899999999999999999999999999875 69999999999999999999988
Q ss_pred -CcEEEEEeCCeeeEEeeC
Q 019115 128 -YPTLYLFVAGVRQFQFFG 145 (346)
Q Consensus 128 -~Pt~~~~~~g~~~~~~~g 145 (346)
+||+++|++|+.+.++.|
T Consensus 108 ~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 108 QLPTIILFQGGKEVARRPY 126 (152)
T ss_pred CCCEEEEEECCEEEEEEec
Confidence 999999999999999987
No 35
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.85 E-value=1.2e-20 Score=140.45 Aligned_cols=100 Identities=23% Similarity=0.517 Sum_probs=88.3
Q ss_pred CcEEcChhcHHHHH---cCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcc-cHhHHHH-CCCCCCcE
Q 019115 57 DVVSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-EKDLAKE-YNILAYPT 130 (346)
Q Consensus 57 ~v~~l~~~~~~~~~---~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-~~~~~~~-~~i~~~Pt 130 (346)
.|.+++.++|+..+ .++++++|.||++||++|+++.|.|.++++.+++ ++.++.|||+. +..+|.+ ++|+++||
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 57789999999877 3578999999999999999999999999999987 59999999998 5788874 99999999
Q ss_pred EEEEeCC-eeeEEeeCC-CCHHHHHHHH
Q 019115 131 LYLFVAG-VRQFQFFGE-RTRDVISAWV 156 (346)
Q Consensus 131 ~~~~~~g-~~~~~~~g~-~~~~~l~~~i 156 (346)
+++|++| .....|.|. ++.+.|..||
T Consensus 82 i~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 82 ILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 9999854 567889995 8999998885
No 36
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.85 E-value=1.8e-20 Score=136.01 Aligned_cols=97 Identities=15% Similarity=0.196 Sum_probs=91.1
Q ss_pred CcEEcChhcHHHHHcCCCcEEEEEecCC--ChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEE
Q 019115 57 DVVSLNGKNFSEFMGKNRNVMVMFYANW--CYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF 134 (346)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~~v~F~a~w--C~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~ 134 (346)
....++..+|++.+..+.+++|.|||+| |++|+.+.|.++++++++++.+.|+.||++++++++.+|+|+++||+++|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~f 90 (111)
T cd02965 11 GWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFF 90 (111)
T ss_pred CCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEE
Confidence 4557899999998888999999999997 99999999999999999998899999999999999999999999999999
Q ss_pred eCCeeeEEeeCCCCHHHHH
Q 019115 135 VAGVRQFQFFGERTRDVIS 153 (346)
Q Consensus 135 ~~g~~~~~~~g~~~~~~l~ 153 (346)
++|+.+.+..|..+.+++.
T Consensus 91 kdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 91 RDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred ECCEEEEEEeCccCHHHHh
Confidence 9999999999999888765
No 37
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.84 E-value=2.3e-20 Score=152.94 Aligned_cols=151 Identities=25% Similarity=0.377 Sum_probs=133.5
Q ss_pred cCCCCccHHHHHHHh-ccCCceeEEEecCHHHHhhcCCCCCCCCCeEEEEecCCCccccCCCC-CCHHHHHHHHhccCCC
Q 019115 189 HDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQ-FTRLAIANFVTHTKHP 266 (346)
Q Consensus 189 ~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~~~~~~~v~~~~~~p~i~~~~~~~~~~~~y~g~-~~~~~l~~fi~~~~~p 266 (346)
.+..+...+.|.++| .+++++.|+.+.++++++.++++. |++++|++.++++..|+|+ ++.++|.+||..+++|
T Consensus 2 ~~~~~~~~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~----p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P 77 (184)
T PF13848_consen 2 PDKDSELFEIFEEAAEKLKGDYQFGVTFNEELAKKYGIKE----PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFP 77 (184)
T ss_dssp STTTSHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHCTCSS----SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSST
T ss_pred CCcccHHHHHHHHHHHhCcCCcEEEEEcHHHHHHHhCCCC----CcEEEeccCCCCceecccccCCHHHHHHHHHHhccc
Confidence 455667889999988 688899999999999999999983 9999999988889999998 8999999999999999
Q ss_pred ceEeecccchhhhccCCCc-EEEEEeeCCC--chHHHHHHHHHHHHhcCceEEEEEECCCcccccchhhhcCCCCCCCcc
Q 019115 267 LVVTLTIHNAQFVFQDPRK-QLWLFAPAYG--SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRV 343 (346)
Q Consensus 267 ~~~~lt~~~~~~~~~~~~~-~~~~f~~~~~--~~~~~~~~~~~a~~~~~~~~f~~vd~~~~~~~~~~~~~~gi~~~~~P~ 343 (346)
++.++|++++..++..+.+ ++++|.+.+. .+.+.+.++.+|+++++++.|+|+|++.+. ++++.+|+++.+.|+
T Consensus 78 ~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~---~~~~~~~i~~~~~P~ 154 (184)
T PF13848_consen 78 LVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFP---RLLKYFGIDEDDLPA 154 (184)
T ss_dssp SCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTH---HHHHHTTTTTSSSSE
T ss_pred cccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhH---HHHHHcCCCCccCCE
Confidence 9999999999999999986 6667765433 778888999999999999999999999644 789999999999999
Q ss_pred ccC
Q 019115 344 SSL 346 (346)
Q Consensus 344 ~~i 346 (346)
++|
T Consensus 155 ~vi 157 (184)
T PF13848_consen 155 LVI 157 (184)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 38
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.83 E-value=3.2e-20 Score=137.28 Aligned_cols=99 Identities=33% Similarity=0.618 Sum_probs=89.2
Q ss_pred CcEEcChhcHHHHHc-CCCcEEEEEecCCChhHhhhhHHHHHHHHHccC--CcEEEEEeCcccHhHHHHCCCCCCcEEEE
Q 019115 57 DVVSLNGKNFSEFMG-KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLAKEYNILAYPTLYL 133 (346)
Q Consensus 57 ~v~~l~~~~~~~~~~-~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~--~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~ 133 (346)
+|.+|++++|++.+. .+++++|+||++||++|+.+.|.|+++++.+++ ++.++.+||+++ +++..+++.++||+++
T Consensus 1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILF 79 (104)
T ss_pred CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEE
Confidence 367899999998774 468999999999999999999999999999876 699999999987 6889999999999999
Q ss_pred EeCCe--eeEEeeCCCCHHHHHHHH
Q 019115 134 FVAGV--RQFQFFGERTRDVISAWV 156 (346)
Q Consensus 134 ~~~g~--~~~~~~g~~~~~~l~~~i 156 (346)
|.+|+ ...+|.|..+.+.+.+||
T Consensus 80 ~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 80 FPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EcCCCcCCceEccCCcCHHHHHhhC
Confidence 99876 577899999999999885
No 39
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.83 E-value=7.2e-20 Score=135.13 Aligned_cols=94 Identities=29% Similarity=0.506 Sum_probs=84.1
Q ss_pred hcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC---CcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCeee
Q 019115 64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ 140 (346)
Q Consensus 64 ~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 140 (346)
++|++. .++++++|.|||+||++|+++.|.|+++++++++ .+.++.+||++.++++++|+|.++||+++|++| ..
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~-~~ 84 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD-LA 84 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC-Cc
Confidence 566664 4578999999999999999999999999999853 599999999999999999999999999999877 56
Q ss_pred EEeeCCCCHHHHHHHHHHH
Q 019115 141 FQFFGERTRDVISAWVREK 159 (346)
Q Consensus 141 ~~~~g~~~~~~l~~~i~~~ 159 (346)
..|.|.++.+.+.+|+++.
T Consensus 85 ~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 85 YNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred eeecCCCCHHHHHHHHHhh
Confidence 7799999999999999864
No 40
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.83 E-value=7.4e-20 Score=135.59 Aligned_cols=99 Identities=36% Similarity=0.672 Sum_probs=89.3
Q ss_pred cEEcChhcHHHHHcC-CCcEEEEEecCCChhHhhhhHHHHHHHHHcc--CCcEEEEEeCcc-cHhHHHHCCCCCCcEEEE
Q 019115 58 VVSLNGKNFSEFMGK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLK--GEADLVMVDAYL-EKDLAKEYNILAYPTLYL 133 (346)
Q Consensus 58 v~~l~~~~~~~~~~~-~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~--~~v~~~~v~~~~-~~~~~~~~~i~~~Pt~~~ 133 (346)
+.++++++++..+.+ +++++|.||++||++|+++.|.|.++++.++ +++.++.+||++ ++++|++|+|+++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 567889999988754 5599999999999999999999999999987 379999999999 999999999999999999
Q ss_pred EeCC-eeeEEeeCCCCHHHHHHHH
Q 019115 134 FVAG-VRQFQFFGERTRDVISAWV 156 (346)
Q Consensus 134 ~~~g-~~~~~~~g~~~~~~l~~~i 156 (346)
|++| +....|.|.++.+++.+|+
T Consensus 82 ~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 82 FPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EeCCCCCccccCCccCHHHHHhhC
Confidence 9955 6678899999999999885
No 41
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.82 E-value=2.2e-19 Score=132.05 Aligned_cols=99 Identities=28% Similarity=0.490 Sum_probs=90.3
Q ss_pred cChhcHHHHHcC-CCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCee
Q 019115 61 LNGKNFSEFMGK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR 139 (346)
Q Consensus 61 l~~~~~~~~~~~-~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 139 (346)
++.+++...+.+ +++++|.||++||++|+++.|.+.++++++++++.++.||++++++++++|+|.++|++++|++|+.
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~ 80 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKE 80 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcE
Confidence 356778876654 5699999999999999999999999999988789999999999999999999999999999999988
Q ss_pred eEEeeCCCCHHHHHHHHHHH
Q 019115 140 QFQFFGERTRDVISAWVREK 159 (346)
Q Consensus 140 ~~~~~g~~~~~~l~~~i~~~ 159 (346)
...+.|..+.+.+.+|+++.
T Consensus 81 ~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 81 VDRSVGALPKAALKQLINKN 100 (101)
T ss_pred eeeecCCCCHHHHHHHHHhh
Confidence 88999999999999999875
No 42
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.82 E-value=2.6e-19 Score=136.14 Aligned_cols=99 Identities=17% Similarity=0.162 Sum_probs=85.7
Q ss_pred ChhcHHHHH--cCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEE-EEeCCe
Q 019115 62 NGKNFSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY-LFVAGV 138 (346)
Q Consensus 62 ~~~~~~~~~--~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~-~~~~g~ 138 (346)
+..++++.+ .++++++|.|||+||+||+.+.|.++++++++++.+.|++||+|+++++++.|+|++.|+++ +|++|+
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCe
Confidence 467788777 46789999999999999999999999999999878999999999999999999999777666 889997
Q ss_pred -eeEEeeC--------CCCHHHHHHHHHHHc
Q 019115 139 -RQFQFFG--------ERTRDVISAWVREKM 160 (346)
Q Consensus 139 -~~~~~~g--------~~~~~~l~~~i~~~~ 160 (346)
.+.+..| ..+.+++.+-++...
T Consensus 90 ~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~ 120 (142)
T PLN00410 90 IMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
T ss_pred EEEEEecccccccccccCCHHHHHHHHHHHH
Confidence 7778888 567777777776654
No 43
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.82 E-value=2.4e-19 Score=139.23 Aligned_cols=100 Identities=17% Similarity=0.335 Sum_probs=89.1
Q ss_pred ChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCccc--HhHHHHCCCCCCcEEEEEe-CCe
Q 019115 62 NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE--KDLAKEYNILAYPTLYLFV-AGV 138 (346)
Q Consensus 62 ~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~--~~~~~~~~i~~~Pt~~~~~-~g~ 138 (346)
+..+++..+.++++++|+|||+||++|+.+.|.+.++++++++++.|+.||++.+ .+++++|+|.++||+++|+ +|+
T Consensus 9 ~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~ 88 (142)
T cd02950 9 SSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGN 88 (142)
T ss_pred ccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCC
Confidence 3456777778899999999999999999999999999999987778888887754 5889999999999999996 899
Q ss_pred eeEEeeCCCCHHHHHHHHHHHcC
Q 019115 139 RQFQFFGERTRDVISAWVREKMT 161 (346)
Q Consensus 139 ~~~~~~g~~~~~~l~~~i~~~~~ 161 (346)
++.++.|..+.+.|.+++.+.+.
T Consensus 89 ~v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 89 EEGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHc
Confidence 99999999999999999998874
No 44
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.5e-19 Score=131.44 Aligned_cols=86 Identities=27% Similarity=0.453 Sum_probs=78.0
Q ss_pred cCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCeeeEEeeCCCCHH
Q 019115 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRD 150 (346)
Q Consensus 71 ~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~ 150 (346)
.++++++|+|||+||+||+.+.|.+.+++.+|.+ +.|++||+++..+++++++|...||+.++++|+.+.++.|....
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~- 96 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKA- 96 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCHH-
Confidence 3469999999999999999999999999999997 99999999999999999999999999999999999999997655
Q ss_pred HHHHHHHH
Q 019115 151 VISAWVRE 158 (346)
Q Consensus 151 ~l~~~i~~ 158 (346)
.+.+.+.+
T Consensus 97 ~l~~~i~~ 104 (106)
T KOG0907|consen 97 ELEKKIAK 104 (106)
T ss_pred HHHHHHHh
Confidence 66665543
No 45
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.81 E-value=1.3e-19 Score=133.06 Aligned_cols=97 Identities=36% Similarity=0.680 Sum_probs=90.1
Q ss_pred EcChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHc--cCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCC
Q 019115 60 SLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKML--KGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG 137 (346)
Q Consensus 60 ~l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~--~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g 137 (346)
+++.++|.+.+.++++++|.||++||++|+++.|.|.++++.+ .+.+.++.|||++++.++++|+|.++||+++|++|
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence 5788999999988889999999999999999999999999999 46899999999999999999999999999999966
Q ss_pred -eeeEEeeCCCCHHHHHHHH
Q 019115 138 -VRQFQFFGERTRDVISAWV 156 (346)
Q Consensus 138 -~~~~~~~g~~~~~~l~~~i 156 (346)
+...+|.|..+.+.+.+|+
T Consensus 82 ~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 82 SKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CcccccCCCCcCHHHHHhhC
Confidence 7888999999999998874
No 46
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.81 E-value=6.2e-19 Score=131.39 Aligned_cols=89 Identities=24% Similarity=0.291 Sum_probs=81.7
Q ss_pred CcEEcCh-hcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEe
Q 019115 57 DVVSLNG-KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (346)
Q Consensus 57 ~v~~l~~-~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~ 135 (346)
.+..++. ++|.+.+.++++++|+||++||++|+.+.|.++++++++. ++.|+.||++++++++++|+|.++||+++|+
T Consensus 5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk 83 (113)
T cd02989 5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL-ETKFIKVNAEKAPFLVEKLNIKVLPTVILFK 83 (113)
T ss_pred CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC-CCEEEEEEcccCHHHHHHCCCccCCEEEEEE
Confidence 5566766 8999999888999999999999999999999999999987 5999999999999999999999999999999
Q ss_pred CCeeeEEeeCC
Q 019115 136 AGVRQFQFFGE 146 (346)
Q Consensus 136 ~g~~~~~~~g~ 146 (346)
+|+.+.++.|.
T Consensus 84 ~G~~v~~~~g~ 94 (113)
T cd02989 84 NGKTVDRIVGF 94 (113)
T ss_pred CCEEEEEEECc
Confidence 99888887664
No 47
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.81 E-value=1.3e-19 Score=133.76 Aligned_cols=93 Identities=19% Similarity=0.271 Sum_probs=84.3
Q ss_pred hcHHHHHcCCCcEEEEEecCCChhHhhhhHHH---HHHHHHccCCcEEEEEeCcc----cHhHHHHCCCCCCcEEEEEe-
Q 019115 64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYL----EKDLAKEYNILAYPTLYLFV- 135 (346)
Q Consensus 64 ~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~~----~~~~~~~~~i~~~Pt~~~~~- 135 (346)
+.|++.+.++++++|+||++||++|+.+.|.+ .++++.+++++.++.||+++ .++++++|+|.++||+++|+
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 46777888999999999999999999999988 67888887789999999987 57899999999999999998
Q ss_pred -CCeeeEEeeCCCCHHHHHHHH
Q 019115 136 -AGVRQFQFFGERTRDVISAWV 156 (346)
Q Consensus 136 -~g~~~~~~~g~~~~~~l~~~i 156 (346)
+|+.+.++.|..+.+++.+++
T Consensus 82 ~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 82 GGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred CCCCCCcccccccCHHHHHHHh
Confidence 788899999999999998886
No 48
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.81 E-value=4.6e-19 Score=132.68 Aligned_cols=89 Identities=25% Similarity=0.266 Sum_probs=81.2
Q ss_pred CCcEEcChhcHHHHHcCC---CcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEE
Q 019115 56 KDVVSLNGKNFSEFMGKN---RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY 132 (346)
Q Consensus 56 ~~v~~l~~~~~~~~~~~~---~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~ 132 (346)
..+.+++.++|.+.+.+. ++++|+||++||++|+.+.|.++++++++. ++.|++||++++ +++++|+|.++||++
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~-~l~~~~~i~~~Pt~~ 81 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEKA-FLVNYLDIKVLPTLL 81 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchhh-HHHHhcCCCcCCEEE
Confidence 367788999999887544 899999999999999999999999999987 689999999998 999999999999999
Q ss_pred EEeCCeeeEEeeCC
Q 019115 133 LFVAGVRQFQFFGE 146 (346)
Q Consensus 133 ~~~~g~~~~~~~g~ 146 (346)
+|++|+.+.++.|.
T Consensus 82 ~f~~G~~v~~~~G~ 95 (113)
T cd02957 82 VYKNGELIDNIVGF 95 (113)
T ss_pred EEECCEEEEEEecH
Confidence 99999999898884
No 49
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.79 E-value=1.4e-18 Score=126.49 Aligned_cols=88 Identities=16% Similarity=0.303 Sum_probs=82.8
Q ss_pred HcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCeeeEEeeCCCCH
Q 019115 70 MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTR 149 (346)
Q Consensus 70 ~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~ 149 (346)
...+++++|.||++||++|+.+.|.++++++++++++.++.+|++++++++++++|.++|+++++++|+.+.++.|..+.
T Consensus 10 ~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~ 89 (97)
T cd02949 10 HESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVKMK 89 (97)
T ss_pred HhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCccH
Confidence 35789999999999999999999999999999987899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 019115 150 DVISAWVR 157 (346)
Q Consensus 150 ~~l~~~i~ 157 (346)
+++.+|++
T Consensus 90 ~~~~~~l~ 97 (97)
T cd02949 90 SEYREFIE 97 (97)
T ss_pred HHHHHhhC
Confidence 99988873
No 50
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.79 E-value=1.3e-18 Score=126.83 Aligned_cols=93 Identities=19% Similarity=0.321 Sum_probs=81.6
Q ss_pred hhcHHHHHcCC--CcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCeee
Q 019115 63 GKNFSEFMGKN--RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ 140 (346)
Q Consensus 63 ~~~~~~~~~~~--~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 140 (346)
.++|++.+... ++++|.||++||++|+++.|.++++++++..++.++.+|+++.++++++|+|.++||+++|++|+.+
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEE
Confidence 46777777555 9999999999999999999999999999766899999999999999999999999999999999888
Q ss_pred EEeeCCCCHHHHHHHH
Q 019115 141 FQFFGERTRDVISAWV 156 (346)
Q Consensus 141 ~~~~g~~~~~~l~~~i 156 (346)
.++.|. +.+.|.+.|
T Consensus 82 ~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 82 DRVSGA-DPKELAKKV 96 (97)
T ss_pred EEEeCC-CHHHHHHhh
Confidence 888885 456665544
No 51
>PTZ00051 thioredoxin; Provisional
Probab=99.78 E-value=3.5e-18 Score=124.84 Aligned_cols=90 Identities=27% Similarity=0.452 Sum_probs=81.0
Q ss_pred ChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCeeeE
Q 019115 62 NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQF 141 (346)
Q Consensus 62 ~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 141 (346)
+.+++++.+..+++++|+||++||++|+++.|.++++++++. ++.++.||++++.+++++|+|.++||+++|++|+...
T Consensus 7 ~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 85 (98)
T PTZ00051 7 SQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDELSEVAEKENITSMPTFKVFKNGSVVD 85 (98)
T ss_pred CHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECcchHHHHHHCCCceeeEEEEEeCCeEEE
Confidence 457788888889999999999999999999999999999876 6999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHH
Q 019115 142 QFFGERTRDVIS 153 (346)
Q Consensus 142 ~~~g~~~~~~l~ 153 (346)
++.|. ..+.|.
T Consensus 86 ~~~G~-~~~~~~ 96 (98)
T PTZ00051 86 TLLGA-NDEALK 96 (98)
T ss_pred EEeCC-CHHHhh
Confidence 99996 445443
No 52
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.77 E-value=3.6e-18 Score=154.91 Aligned_cols=108 Identities=20% Similarity=0.452 Sum_probs=93.9
Q ss_pred CCCcCCCcEEcChhcHHHHHc---CCCcEEEEEecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcccH-hHH-HHCC
Q 019115 51 PLLYAKDVVSLNGKNFSEFMG---KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEK-DLA-KEYN 124 (346)
Q Consensus 51 ~~~~~~~v~~l~~~~~~~~~~---~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~-~~~-~~~~ 124 (346)
..+.+..|++||.++|++.+. .+++++|.||||||++|+.+.|.|+++++++++ ++.|+.|||+.+. +++ ++|+
T Consensus 346 dl~~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~ 425 (463)
T TIGR00424 346 DIFDSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQ 425 (463)
T ss_pred cccCCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcC
Confidence 344667899999999999875 788999999999999999999999999999987 5999999999763 454 7899
Q ss_pred CCCCcEEEEEeCCe-eeEEee-CCCCHHHHHHHHHH
Q 019115 125 ILAYPTLYLFVAGV-RQFQFF-GERTRDVISAWVRE 158 (346)
Q Consensus 125 i~~~Pt~~~~~~g~-~~~~~~-g~~~~~~l~~~i~~ 158 (346)
|.++||+++|++|. ....|. |.++.+.|..|++.
T Consensus 426 I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 426 LGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred CCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 99999999999874 457797 58999999999974
No 53
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.76 E-value=3.3e-18 Score=123.91 Aligned_cols=78 Identities=14% Similarity=0.145 Sum_probs=69.6
Q ss_pred hcHHHHHc--CCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCeeeE
Q 019115 64 KNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQF 141 (346)
Q Consensus 64 ~~~~~~~~--~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 141 (346)
+.+++.+. ++++++|.|+|+||++|+.+.|.++++++++++.+.|+.||+++.+++++.|+|+..||+++|.+|+.+.
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~~ 82 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHMK 82 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEEE
Confidence 45565553 5899999999999999999999999999999855999999999999999999999999999999996443
No 54
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.3e-17 Score=149.65 Aligned_cols=225 Identities=16% Similarity=0.202 Sum_probs=144.5
Q ss_pred cCCCcEEcChhcHHHHHcCC-CcEEEEEecCCChhHhhhhHHHHHHHHHccC---CcEEEEEeCc--ccHhHHHHCCCCC
Q 019115 54 YAKDVVSLNGKNFSEFMGKN-RNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAY--LEKDLAKEYNILA 127 (346)
Q Consensus 54 ~~~~v~~l~~~~~~~~~~~~-~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~--~~~~~~~~~~i~~ 127 (346)
++++++.|+.++|+..+... +..+|.||++||++|++++|.|+++|+.+.+ -+.++.|||. .|..+|++|+|++
T Consensus 37 ~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~ 116 (606)
T KOG1731|consen 37 PDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG 116 (606)
T ss_pred CCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC
Confidence 35799999999999888544 5899999999999999999999999998877 6889999996 4678999999999
Q ss_pred CcEEEEEeCC----eeeEEeeCCCCHHHHHHHHHHHcC-----------C---CceeccChhHHHHhhccC-CeEEEEEe
Q 019115 128 YPTLYLFVAG----VRQFQFFGERTRDVISAWVREKMT-----------L---GTYSITTTDEAERILTVE-SKLVLGFL 188 (346)
Q Consensus 128 ~Pt~~~~~~g----~~~~~~~g~~~~~~l~~~i~~~~~-----------~---~~~~i~s~~~~~~~~~~~-~~~~v~f~ 188 (346)
+|++.+|..+ ..-..+.|.....++.+.+.+.+. | ++.+-++.+++.+...+. +.+.+.|-
T Consensus 117 ~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~yvAiv~e 196 (606)
T KOG1731|consen 117 YPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANYVAIVFE 196 (606)
T ss_pred CceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcccccccceeEEEEe
Confidence 9999999732 222455666667777777766542 2 334444555555555443 23333332
Q ss_pred cCCCCccHHHHHHHhccCCceeEEEecCHHHHhh--cCCCCCCCCCeEEEEecCCCccccCCC---CCCHHHHHHHHhc-
Q 019115 189 HDLEGMESEELAAASKLHSDVNFYQTTSADVAEF--FHIHPKSKRPALIFLHLEAGKATPFRH---QFTRLAIANFVTH- 262 (346)
Q Consensus 189 ~~~~~~~~~~~~~~a~~~~~~~f~~~~~~~~~~~--~~v~~~~~~p~i~~~~~~~~~~~~y~g---~~~~~~l~~fi~~- 262 (346)
.....-..+.+.... -.+++......+.+.... ++.+ ..|..++++++...+..-.+ +.-.+.|.++|.+
T Consensus 197 ~~~s~lg~~~~l~~l-~~~~v~vr~~~d~q~~~~~~l~~~---~~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg~~ 272 (606)
T KOG1731|consen 197 TEPSDLGWANLLNDL-PSKQVGVRARLDTQNFPLFGLKPD---NFPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLGDK 272 (606)
T ss_pred cCCcccHHHHHHhhc-cCCCcceEEEecchhccccccCCC---CchhhhhhcCCcccccccccccHHHHHHHHHHHhcCc
Confidence 222222333333332 124444444433333333 4554 58999999988644333322 2233788888864
Q ss_pred --cCCCceEeecccchhhhccC
Q 019115 263 --TKHPLVVTLTIHNAQFVFQD 282 (346)
Q Consensus 263 --~~~p~~~~lt~~~~~~~~~~ 282 (346)
..-|.+...+..+....+..
T Consensus 273 ~~a~~pt~~p~~~~~~~~~Id~ 294 (606)
T KOG1731|consen 273 NEASGPTLHPITATTAAPTIDA 294 (606)
T ss_pred cccCCCCcCcccccccchhhhc
Confidence 33455555554445544444
No 55
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.76 E-value=7.9e-18 Score=125.80 Aligned_cols=96 Identities=24% Similarity=0.439 Sum_probs=79.2
Q ss_pred CcEEcChhcHHHHHcC-CCcEEEEEecCCChhHhhhhHHHHHHHHHccC---CcEEEEEeCcc--cHhHHHHCCCCCCcE
Q 019115 57 DVVSLNGKNFSEFMGK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYL--EKDLAKEYNILAYPT 130 (346)
Q Consensus 57 ~v~~l~~~~~~~~~~~-~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~--~~~~~~~~~i~~~Pt 130 (346)
.++++++++|++.+.+ +++++|+|||+||++|+.+.|.|+++++++++ .+.++.+||+. ++++|++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 5788999999988754 46999999999999999999999999998864 59999999864 678999999999999
Q ss_pred EEEEeCCee----eEEeeCC-CCHHHH
Q 019115 131 LYLFVAGVR----QFQFFGE-RTRDVI 152 (346)
Q Consensus 131 ~~~~~~g~~----~~~~~g~-~~~~~l 152 (346)
+++|++|.. -..|.|. +..+.+
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~ 108 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGPERDVNEL 108 (114)
T ss_pred EEEECCCCccCCCCCcccCCccCHHHH
Confidence 999997742 1345555 444444
No 56
>PLN02309 5'-adenylylsulfate reductase
Probab=99.76 E-value=6.7e-18 Score=153.14 Aligned_cols=107 Identities=22% Similarity=0.485 Sum_probs=94.7
Q ss_pred CcCCCcEEcChhcHHHHH---cCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCc-ccHhHHH-HCCCC
Q 019115 53 LYAKDVVSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY-LEKDLAK-EYNIL 126 (346)
Q Consensus 53 ~~~~~v~~l~~~~~~~~~---~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~-~~~~~~~-~~~i~ 126 (346)
.++..+.+|+.++|++.+ ..+++++|+||||||++|+++.|.|+++++++++ ++.|++|||+ .+.++|+ +|+|.
T Consensus 342 ~~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~ 421 (457)
T PLN02309 342 FNSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLG 421 (457)
T ss_pred cCCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCc
Confidence 355689999999999876 4789999999999999999999999999999976 6999999999 8888997 59999
Q ss_pred CCcEEEEEeCCe-eeEEeeC-CCCHHHHHHHHHHH
Q 019115 127 AYPTLYLFVAGV-RQFQFFG-ERTRDVISAWVREK 159 (346)
Q Consensus 127 ~~Pt~~~~~~g~-~~~~~~g-~~~~~~l~~~i~~~ 159 (346)
++||+++|.+|. ....|.| .++.+.|..|++..
T Consensus 422 ~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 422 SFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 999999999764 4678875 69999999999864
No 57
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.75 E-value=4e-17 Score=133.13 Aligned_cols=110 Identities=13% Similarity=0.260 Sum_probs=84.3
Q ss_pred CCCCCCCCcCCCcEEcCh--hcHHH-HHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccH-----
Q 019115 46 NNHTWPLLYAKDVVSLNG--KNFSE-FMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK----- 117 (346)
Q Consensus 46 ~~~~~~~~~~~~v~~l~~--~~~~~-~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~----- 117 (346)
.+...|.+ .+.++++ +.+.. ...++++++|+|||+||++|++++|.+.+++++ ++.++.|+.+++.
T Consensus 41 ~g~~~p~f---~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~ 114 (185)
T PRK15412 41 IGKPVPKF---RLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAIS 114 (185)
T ss_pred cCCCCCCc---CCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHH
Confidence 34455555 4444442 33332 234789999999999999999999999998753 6788888865432
Q ss_pred ------------------hHHHHCCCCCCcEEEEEe-CCeeeEEeeCCCCHHHHHHHHHHHcC
Q 019115 118 ------------------DLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMT 161 (346)
Q Consensus 118 ------------------~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (346)
.+++.||+.++|++++++ +|++...+.|..+.+.+.++++..+.
T Consensus 115 ~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 115 WLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred HHHHcCCCCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 345678999999999997 99999999999999999999988763
No 58
>PTZ00102 disulphide isomerase; Provisional
Probab=99.75 E-value=1.2e-17 Score=157.29 Aligned_cols=116 Identities=22% Similarity=0.388 Sum_probs=102.0
Q ss_pred CCCCCcCCCcEEcChhcHHHHH-cCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC--CcEEEEEeCcccHhHHHHCCC
Q 019115 49 TWPLLYAKDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLAKEYNI 125 (346)
Q Consensus 49 ~~~~~~~~~v~~l~~~~~~~~~-~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~--~v~~~~v~~~~~~~~~~~~~i 125 (346)
+.|......+..+++++|++.+ +.+++++|+|||+||++|+++.|.|+++++.+++ .+.++.+||+.+...++++++
T Consensus 350 ~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v 429 (477)
T PTZ00102 350 PIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSW 429 (477)
T ss_pred CCCCCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCC
Confidence 3444456679999999999874 7789999999999999999999999999999875 689999999999999999999
Q ss_pred CCCcEEEEEeCCe-eeEEeeCCCCHHHHHHHHHHHcCCCc
Q 019115 126 LAYPTLYLFVAGV-RQFQFFGERTRDVISAWVREKMTLGT 164 (346)
Q Consensus 126 ~~~Pt~~~~~~g~-~~~~~~g~~~~~~l~~~i~~~~~~~~ 164 (346)
+++||+++|++|. ...+|.|.++.+.+.+||.++...+.
T Consensus 430 ~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~~~ 469 (477)
T PTZ00102 430 SAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHATNPF 469 (477)
T ss_pred cccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCCCc
Confidence 9999999999664 45689999999999999999886543
No 59
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.75 E-value=2.7e-17 Score=123.96 Aligned_cols=99 Identities=11% Similarity=0.155 Sum_probs=82.8
Q ss_pred CcEEcChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccH-----------hHHHHCC-
Q 019115 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-----------DLAKEYN- 124 (346)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~-----------~~~~~~~- 124 (346)
.+..++.+++.+.+.+++.++|+|+++|||+|+.+.|.+.+++++. ++.++.||.+.++ ++.++|+
T Consensus 7 ~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i 84 (122)
T TIGR01295 7 GLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGI 84 (122)
T ss_pred cceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcCC
Confidence 4567888999999999999999999999999999999999999983 5667777777432 5667765
Q ss_pred ---CCCCcEEEEEeCCeeeEEeeC-CCCHHHHHHHHH
Q 019115 125 ---ILAYPTLYLFVAGVRQFQFFG-ERTRDVISAWVR 157 (346)
Q Consensus 125 ---i~~~Pt~~~~~~g~~~~~~~g-~~~~~~l~~~i~ 157 (346)
|.++||+++|++|+.+.+..| ..+.++|.+|+.
T Consensus 85 ~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 85 PTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred cccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 556999999999999999988 457899888763
No 60
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.75 E-value=1.8e-17 Score=126.62 Aligned_cols=98 Identities=17% Similarity=0.317 Sum_probs=84.6
Q ss_pred hcHHHHHcCC-CcEEEEEecCCChhHhhhhHHHH---HHHHHccCCcEEEEEeCccc-------------HhHHHHCCCC
Q 019115 64 KNFSEFMGKN-RNVMVMFYANWCYWSKKLAPEFA---AAAKMLKGEADLVMVDAYLE-------------KDLAKEYNIL 126 (346)
Q Consensus 64 ~~~~~~~~~~-~~~~v~F~a~wC~~C~~~~p~~~---~~~~~~~~~v~~~~v~~~~~-------------~~~~~~~~i~ 126 (346)
+.+....+++ ++++|.|||+||++|+++.|.+. ++.+.+++++.++.||.+++ .+++.+|+|.
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~ 83 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR 83 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc
Confidence 4566677788 99999999999999999999885 56666666788999998864 6899999999
Q ss_pred CCcEEEEEe-C-CeeeEEeeCCCCHHHHHHHHHHHcC
Q 019115 127 AYPTLYLFV-A-GVRQFQFFGERTRDVISAWVREKMT 161 (346)
Q Consensus 127 ~~Pt~~~~~-~-g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (346)
++||+++++ + |+.+.++.|..+.+.+.++++....
T Consensus 84 ~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 84 FTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred cccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 999999999 4 6889999999999999999987653
No 61
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.74 E-value=4e-17 Score=130.87 Aligned_cols=101 Identities=16% Similarity=0.201 Sum_probs=86.2
Q ss_pred CCCcEEcCh-hcHHHHHcCC---CcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcE
Q 019115 55 AKDVVSLNG-KNFSEFMGKN---RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPT 130 (346)
Q Consensus 55 ~~~v~~l~~-~~~~~~~~~~---~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt 130 (346)
...+.+++. ++|...+.+. .+++|.||++||++|+.+.|.+.++++++. .+.|++||+++. +++.+|+|.++||
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~-~l~~~f~v~~vPT 138 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT-GASDEFDTDALPA 138 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch-hhHHhCCCCCCCE
Confidence 457888988 9999887543 499999999999999999999999999986 699999999987 8999999999999
Q ss_pred EEEEeCCeeeEEeeCC-------CCHHHHHHHHH
Q 019115 131 LYLFVAGVRQFQFFGE-------RTRDVISAWVR 157 (346)
Q Consensus 131 ~~~~~~g~~~~~~~g~-------~~~~~l~~~i~ 157 (346)
+++|++|+.+.++.|. .+.+.|..++.
T Consensus 139 lllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~ 172 (175)
T cd02987 139 LLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLV 172 (175)
T ss_pred EEEEECCEEEEEEechHHhcCCCCCHHHHHHHHH
Confidence 9999999888877653 44555555554
No 62
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.74 E-value=3.1e-17 Score=122.34 Aligned_cols=94 Identities=14% Similarity=0.237 Sum_probs=82.1
Q ss_pred HHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCeeeE--Ee
Q 019115 66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQF--QF 143 (346)
Q Consensus 66 ~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~--~~ 143 (346)
+.+.+.++..++|.|||+||++|+.+.|.++++++.+ +++.+..||.+++++++++|+|.++||++++++|.... ++
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~ 93 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRY 93 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEE
Confidence 4445566778999999999999999999999999887 57999999999999999999999999999999764332 78
Q ss_pred eCCCCHHHHHHHHHHHc
Q 019115 144 FGERTRDVISAWVREKM 160 (346)
Q Consensus 144 ~g~~~~~~l~~~i~~~~ 160 (346)
.|..+.+++.+||...+
T Consensus 94 ~G~~~~~el~~~i~~i~ 110 (113)
T cd02975 94 YGLPAGYEFASLIEDIV 110 (113)
T ss_pred EecCchHHHHHHHHHHH
Confidence 89999999999998765
No 63
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.73 E-value=8.9e-17 Score=115.84 Aligned_cols=91 Identities=26% Similarity=0.493 Sum_probs=84.0
Q ss_pred cHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCeeeEEee
Q 019115 65 NFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFF 144 (346)
Q Consensus 65 ~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~ 144 (346)
+|++.+..+++++|.||++||++|+.+.|.++++++. .+++.++.+|++++++++++|++.++|+++++++|+....+.
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~ 80 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRVV 80 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEEe
Confidence 5667777779999999999999999999999999988 558999999999999999999999999999999998899999
Q ss_pred CCCCHHHHHHHH
Q 019115 145 GERTRDVISAWV 156 (346)
Q Consensus 145 g~~~~~~l~~~i 156 (346)
|..+.+.|.++|
T Consensus 81 g~~~~~~l~~~i 92 (93)
T cd02947 81 GADPKEELEEFL 92 (93)
T ss_pred cCCCHHHHHHHh
Confidence 999989998886
No 64
>PTZ00062 glutaredoxin; Provisional
Probab=99.71 E-value=7.6e-16 Score=125.30 Aligned_cols=161 Identities=11% Similarity=0.096 Sum_probs=112.3
Q ss_pred ChhcHHHHHcCC-CcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCeee
Q 019115 62 NGKNFSEFMGKN-RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ 140 (346)
Q Consensus 62 ~~~~~~~~~~~~-~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 140 (346)
+.+++++.+.++ +.++++|||+||++|+.+.|.+.++++++. ++.|+.||.+ |+|.++||+++|++|+.+
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~~d--------~~V~~vPtfv~~~~g~~i 75 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVNLA--------DANNEYGVFEFYQNSQLI 75 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEccc--------cCcccceEEEEEECCEEE
Confidence 456777777654 789999999999999999999999999986 7999999976 999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHHHcCCCceeccChhHHHHhhccCCeEEEEE---ecCCCCccHHHHHHHhccCCceeEEE-ecC
Q 019115 141 FQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGF---LHDLEGMESEELAAASKLHSDVNFYQ-TTS 216 (346)
Q Consensus 141 ~~~~g~~~~~~l~~~i~~~~~~~~~~i~s~~~~~~~~~~~~~~~v~f---~~~~~~~~~~~~~~~a~~~~~~~f~~-~~~ 216 (346)
.++.|.. +..+..++.++.+..... .-.+.+++++.++++++..= ..++|........-+....-.+.... ..+
T Consensus 76 ~r~~G~~-~~~~~~~~~~~~~~~~~~-~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d 153 (204)
T PTZ00062 76 NSLEGCN-TSTLVSFIRGWAQKGSSE-DTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFED 153 (204)
T ss_pred eeeeCCC-HHHHHHHHHHHcCCCCHH-HHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCC
Confidence 9999874 788999999887654432 12234556666666544332 11467665555444444333333222 234
Q ss_pred HHHHhhc----CCCCCCCCCeEEE
Q 019115 217 ADVAEFF----HIHPKSKRPALIF 236 (346)
Q Consensus 217 ~~~~~~~----~v~~~~~~p~i~~ 236 (346)
+++.+.+ +.+ .+|.|.+
T Consensus 154 ~~~~~~l~~~sg~~---TvPqVfI 174 (204)
T PTZ00062 154 PDLREELKVYSNWP---TYPQLYV 174 (204)
T ss_pred HHHHHHHHHHhCCC---CCCeEEE
Confidence 4443332 332 4677664
No 65
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=5.4e-17 Score=130.68 Aligned_cols=100 Identities=25% Similarity=0.331 Sum_probs=88.7
Q ss_pred ChhcHHHHHc--CCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCee
Q 019115 62 NGKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR 139 (346)
Q Consensus 62 ~~~~~~~~~~--~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 139 (346)
++..|+..+. .++.++|+|+|+||+||++..|.|..++.+|. +..|.+||+++.+..+..+||...||+++|++|..
T Consensus 8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp-~aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~k 86 (288)
T KOG0908|consen 8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP-GAVFLKVDVDECRGTAATNGVNAMPTFIFFRNGVK 86 (288)
T ss_pred CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc-ccEEEEEeHHHhhchhhhcCcccCceEEEEecCeE
Confidence 4567776663 45799999999999999999999999999997 78899999999999999999999999999999998
Q ss_pred eEEeeCCCCHHHHHHHHHHHcCCC
Q 019115 140 QFQFFGERTRDVISAWVREKMTLG 163 (346)
Q Consensus 140 ~~~~~g~~~~~~l~~~i~~~~~~~ 163 (346)
+.++.|. ++..|++.+.++....
T Consensus 87 id~~qGA-d~~gLe~kv~~~~sts 109 (288)
T KOG0908|consen 87 IDQIQGA-DASGLEEKVAKYASTS 109 (288)
T ss_pred eeeecCC-CHHHHHHHHHHHhccC
Confidence 9999886 6678888888887543
No 66
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.5e-17 Score=148.33 Aligned_cols=114 Identities=26% Similarity=0.488 Sum_probs=97.6
Q ss_pred CCCCCCCCcC-CCcEEcChhcHHHHH-cCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC--CcEEEEEeCcccHhHHH
Q 019115 46 NNHTWPLLYA-KDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLAK 121 (346)
Q Consensus 46 ~~~~~~~~~~-~~v~~l~~~~~~~~~-~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~--~v~~~~v~~~~~~~~~~ 121 (346)
.+++.|+... .+|..+-++||++++ +.+|-|||.||||||+||+++.|.|++||+.+++ ++.++++|.+.|.- .
T Consensus 355 kSqpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~--~ 432 (493)
T KOG0190|consen 355 KSQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV--P 432 (493)
T ss_pred ccCCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC--c
Confidence 4445566655 679999999999876 7789999999999999999999999999999998 89999999988742 4
Q ss_pred HCCCCCCcEEEEEeCCe--eeEEeeCCCCHHHHHHHHHHHcC
Q 019115 122 EYNILAYPTLYLFVAGV--RQFQFFGERTRDVISAWVREKMT 161 (346)
Q Consensus 122 ~~~i~~~Pt~~~~~~g~--~~~~~~g~~~~~~l~~~i~~~~~ 161 (346)
...+.++||+++++.|. .+..|.|.++.+.+..|+.+.-.
T Consensus 433 ~~~~~~fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 433 SLKVDGFPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred cccccccceEEEecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence 45677899999999553 58899999999999999987764
No 67
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.71 E-value=2.8e-16 Score=127.34 Aligned_cols=111 Identities=19% Similarity=0.306 Sum_probs=92.0
Q ss_pred CCCCCCCCcCCCcEEcChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcc---------
Q 019115 46 NNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL--------- 115 (346)
Q Consensus 46 ~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~--------- 115 (346)
.+...|.+ .+.+++++.++....++++++|+||++||++|+...|.+.++++++++ ++.++.|+++.
T Consensus 37 ~g~~~p~~---~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~ 113 (173)
T PRK03147 37 VGKEAPNF---VLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFV 113 (173)
T ss_pred CCCCCCCc---EeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHH
Confidence 34444444 666778877765445789999999999999999999999999999976 58899998753
Q ss_pred -------------cHhHHHHCCCCCCcEEEEEe-CCeeeEEeeCCCCHHHHHHHHHHH
Q 019115 116 -------------EKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREK 159 (346)
Q Consensus 116 -------------~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~ 159 (346)
+.++++.|++.++|++++++ +|+++..+.|..+.+++.+++.+.
T Consensus 114 ~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 114 NRYGLTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred HHhCCCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 35778999999999999998 888888999999999999988754
No 68
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.70 E-value=2.4e-16 Score=144.86 Aligned_cols=101 Identities=22% Similarity=0.252 Sum_probs=84.0
Q ss_pred CcEEcChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC-CcEEEEEe-----------------------
Q 019115 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVD----------------------- 112 (346)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~----------------------- 112 (346)
.+.++++++.. +.++++++|+|||+||++|++++|.+++++++++. ++.++.|+
T Consensus 42 ~l~D~dG~~v~--lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~ 119 (521)
T PRK14018 42 KTADNRPASVY--LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYP 119 (521)
T ss_pred EeecCCCceee--ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCc
Confidence 55666666553 24789999999999999999999999999999874 56665543
Q ss_pred -----CcccHhHHHHCCCCCCcEEEEEe-CCeeeEEeeCCCCHHHHHHHHHHH
Q 019115 113 -----AYLEKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREK 159 (346)
Q Consensus 113 -----~~~~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~ 159 (346)
++.+..+++.|+|.++||+++++ +|+++..+.|.++.++|.++|+..
T Consensus 120 ~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 120 KLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred ccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 34567789999999999998886 899999999999999999999844
No 69
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.65 E-value=1.1e-15 Score=112.55 Aligned_cols=88 Identities=22% Similarity=0.263 Sum_probs=78.6
Q ss_pred CCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCC--CCcEEEEEeC--CeeeEEeeCCC
Q 019115 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNIL--AYPTLYLFVA--GVRQFQFFGER 147 (346)
Q Consensus 72 ~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~--~~Pt~~~~~~--g~~~~~~~g~~ 147 (346)
.++++++.|+++||++|+.+.|.++++|+++++++.|+.||+++++++++.||+. ++|+++++++ |+......|..
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~ 90 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEEL 90 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCcccc
Confidence 3789999999999999999999999999999999999999999999999999999 9999999997 64444334556
Q ss_pred CHHHHHHHHHHH
Q 019115 148 TRDVISAWVREK 159 (346)
Q Consensus 148 ~~~~l~~~i~~~ 159 (346)
+.+.+.+|+.+.
T Consensus 91 ~~~~l~~fi~~~ 102 (103)
T cd02982 91 TAESLEEFVEDF 102 (103)
T ss_pred CHHHHHHHHHhh
Confidence 999999999864
No 70
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.65 E-value=4.4e-15 Score=119.86 Aligned_cols=110 Identities=19% Similarity=0.285 Sum_probs=83.8
Q ss_pred CCCCCCCCcCCCcEEcChh--cHH-HHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeC---------
Q 019115 46 NNHTWPLLYAKDVVSLNGK--NFS-EFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA--------- 113 (346)
Q Consensus 46 ~~~~~~~~~~~~v~~l~~~--~~~-~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~--------- 113 (346)
.|...|.+ .+.+++++ .+. +...++++++|+||++||++|+++.|.+++++++ ++.++.|+.
T Consensus 36 vG~~ap~f---~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~ 109 (173)
T TIGR00385 36 IGKPVPAF---PLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALK 109 (173)
T ss_pred cCCCCCCc---cccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHH
Confidence 34455655 33444443 343 2334689999999999999999999999998764 466666664
Q ss_pred --------------cccHhHHHHCCCCCCcEEEEEe-CCeeeEEeeCCCCHHHHHHHHHHHcC
Q 019115 114 --------------YLEKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMT 161 (346)
Q Consensus 114 --------------~~~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (346)
+.+.++++.|++.++|++++++ +|++..++.|..+.+++.+++.+.+.
T Consensus 110 ~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 110 FLKELGNPYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred HHHHcCCCCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 2334567889999999888886 89889999999999999999988763
No 71
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.65 E-value=2.3e-15 Score=122.27 Aligned_cols=99 Identities=15% Similarity=0.191 Sum_probs=82.9
Q ss_pred CCCcEEcChhcHHHHH-cC--CCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEE
Q 019115 55 AKDVVSLNGKNFSEFM-GK--NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL 131 (346)
Q Consensus 55 ~~~v~~l~~~~~~~~~-~~--~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~ 131 (346)
.+.+..++.++|...+ .. +.+|+|.||++||++|+.+.|.|+++|+++. .+.|++||++.. +..|++.++||+
T Consensus 81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~~---~~~~~i~~lPTl 156 (192)
T cd02988 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQC---IPNYPDKNLPTI 156 (192)
T ss_pred CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHHh---HhhCCCCCCCEE
Confidence 4678899999999655 33 3589999999999999999999999999987 699999998753 689999999999
Q ss_pred EEEeCCeeeEEeeCC-------CCHHHHHHHHH
Q 019115 132 YLFVAGVRQFQFFGE-------RTRDVISAWVR 157 (346)
Q Consensus 132 ~~~~~g~~~~~~~g~-------~~~~~l~~~i~ 157 (346)
++|++|+.+.++.|. .+.+.+..++.
T Consensus 157 liyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~ 189 (192)
T cd02988 157 LVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLV 189 (192)
T ss_pred EEEECCEEEEEEeCchhhCCCCCCHHHHHHHHH
Confidence 999999988888773 44555555543
No 72
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.64 E-value=2.7e-15 Score=105.61 Aligned_cols=80 Identities=18% Similarity=0.363 Sum_probs=72.4
Q ss_pred EEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCeeeEEeeCCCCHHHHHHH
Q 019115 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAW 155 (346)
Q Consensus 76 ~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~ 155 (346)
.+..||++||++|+.+.|.+++++++++..+.+..||++++++++++||+.++||+++ +|+ .++.|..+.+++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--VEFIGAPTKEELVEA 77 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--EEEecCCCHHHHHHH
Confidence 4678999999999999999999999987789999999999999999999999999986 774 378899999999999
Q ss_pred HHHH
Q 019115 156 VREK 159 (346)
Q Consensus 156 i~~~ 159 (346)
+.+.
T Consensus 78 l~~~ 81 (82)
T TIGR00411 78 IKKR 81 (82)
T ss_pred HHhh
Confidence 8764
No 73
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.64 E-value=6e-15 Score=115.18 Aligned_cols=87 Identities=11% Similarity=0.215 Sum_probs=68.6
Q ss_pred cCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCccc------------HhHH-HHC---CCCCCcEEEEE
Q 019115 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE------------KDLA-KEY---NILAYPTLYLF 134 (346)
Q Consensus 71 ~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~------------~~~~-~~~---~i~~~Pt~~~~ 134 (346)
..++..+|+|||+||++|++++|.+++++++++ +.++.|+.++. .+.. ..| ++.++||++++
T Consensus 48 ~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LI 125 (153)
T TIGR02738 48 NQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLV 125 (153)
T ss_pred hcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEE
Confidence 345677999999999999999999999999984 56666666542 2333 345 88999999999
Q ss_pred e-CCee-eEEeeCCCCHHHHHHHHHHH
Q 019115 135 V-AGVR-QFQFFGERTRDVISAWVREK 159 (346)
Q Consensus 135 ~-~g~~-~~~~~g~~~~~~l~~~i~~~ 159 (346)
+ +|.. ...+.|..+.+++.+.+.+.
T Consensus 126 D~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 126 NVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred eCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 8 6654 55788999999998888764
No 74
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.63 E-value=2.5e-15 Score=141.01 Aligned_cols=113 Identities=28% Similarity=0.501 Sum_probs=97.1
Q ss_pred CCCCcCCCcEEcChhcHHHHH-cCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC---CcEEEEEeCcccHhHHHHCCC
Q 019115 50 WPLLYAKDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNI 125 (346)
Q Consensus 50 ~~~~~~~~v~~l~~~~~~~~~-~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~i 125 (346)
.|......+..+++++|++.+ ..+++++|.|||+||++|+.+.|.++++++.+++ ++.++.+||+.+. ++. ++|
T Consensus 340 ~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i 417 (462)
T TIGR01130 340 IPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEV 417 (462)
T ss_pred CCccCCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCc
Confidence 333345678899999999876 5689999999999999999999999999999987 7999999999874 444 999
Q ss_pred CCCcEEEEEeCCee--eEEeeCCCCHHHHHHHHHHHcCCCc
Q 019115 126 LAYPTLYLFVAGVR--QFQFFGERTRDVISAWVREKMTLGT 164 (346)
Q Consensus 126 ~~~Pt~~~~~~g~~--~~~~~g~~~~~~l~~~i~~~~~~~~ 164 (346)
.++||+++|++|.. ...|.|.++.+.|.+|+.+....++
T Consensus 418 ~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~ 458 (462)
T TIGR01130 418 EGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATFPL 458 (462)
T ss_pred cccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCCCCC
Confidence 99999999997754 4689999999999999998875554
No 75
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.62 E-value=2.4e-15 Score=111.63 Aligned_cols=77 Identities=17% Similarity=0.342 Sum_probs=67.7
Q ss_pred ChhcHHHHHcC--CCcEEEEEec-------CCChhHhhhhHHHHHHHHHccCCcEEEEEeCcc-------cHhHHHHCCC
Q 019115 62 NGKNFSEFMGK--NRNVMVMFYA-------NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-------EKDLAKEYNI 125 (346)
Q Consensus 62 ~~~~~~~~~~~--~~~~~v~F~a-------~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~-------~~~~~~~~~i 125 (346)
+.++|.+.+.. +++++|.||| +||++|+.+.|.++++++++++++.|+.||+++ +.+++.+++|
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I 87 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL 87 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc
Confidence 45667766654 7899999999 999999999999999999998789999999976 4689999999
Q ss_pred C-CCcEEEEEeCCe
Q 019115 126 L-AYPTLYLFVAGV 138 (346)
Q Consensus 126 ~-~~Pt~~~~~~g~ 138 (346)
. ++||+++|++|+
T Consensus 88 ~~~iPT~~~~~~~~ 101 (119)
T cd02952 88 TTGVPTLLRWKTPQ 101 (119)
T ss_pred ccCCCEEEEEcCCc
Confidence 9 999999998774
No 76
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.60 E-value=8.6e-15 Score=112.19 Aligned_cols=87 Identities=16% Similarity=0.308 Sum_probs=70.8
Q ss_pred hcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEe-----------------------CcccHhHH
Q 019115 64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD-----------------------AYLEKDLA 120 (346)
Q Consensus 64 ~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~-----------------------~~~~~~~~ 120 (346)
..+.....++++++|+||++||++|+++.|.++++++++ ++.++.|+ ++.+..++
T Consensus 16 ~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 93 (127)
T cd03010 16 KTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG--RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVG 93 (127)
T ss_pred ccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc--CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHH
Confidence 445444446899999999999999999999999998876 36666665 34556788
Q ss_pred HHCCCCCCcEEEEEe-CCeeeEEeeCCCCHHHH
Q 019115 121 KEYNILAYPTLYLFV-AGVRQFQFFGERTRDVI 152 (346)
Q Consensus 121 ~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l 152 (346)
+.|++.++|+.++++ +|++..++.|..+.+.|
T Consensus 94 ~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 94 IDLGVYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred HhcCCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 999999999888887 99889999999887754
No 77
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.60 E-value=1.7e-15 Score=113.45 Aligned_cols=97 Identities=16% Similarity=0.262 Sum_probs=72.9
Q ss_pred hcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccH-hHHHHCCCCC--CcEEEEEe-CCee
Q 019115 64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-DLAKEYNILA--YPTLYLFV-AGVR 139 (346)
Q Consensus 64 ~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~-~~~~~~~i~~--~Pt~~~~~-~g~~ 139 (346)
+.++....++++++|.|||+||++|+.+.|.+.+..........|+.||.+.+. ...+.|++.+ +||+++++ +|+.
T Consensus 10 ~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~ 89 (117)
T cd02959 10 DGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDV 89 (117)
T ss_pred HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCC
Confidence 344555678899999999999999999999999977654444456666666554 4567899986 99999997 9977
Q ss_pred eE---EeeCCCCHHHHHHHHHHHc
Q 019115 140 QF---QFFGERTRDVISAWVREKM 160 (346)
Q Consensus 140 ~~---~~~g~~~~~~l~~~i~~~~ 160 (346)
+. ...|..+.+.+.+.+....
T Consensus 90 ~~~~~~~~~~~~~~~f~~~~~~~~ 113 (117)
T cd02959 90 HPEIINKKGNPNYKYFYSSAAQVT 113 (117)
T ss_pred chhhccCCCCccccccCCCHHHHH
Confidence 55 4557777776666665544
No 78
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.60 E-value=1.9e-14 Score=114.13 Aligned_cols=84 Identities=13% Similarity=0.185 Sum_probs=70.3
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCccc-------------HhHHHHCCC--CCCcEEEEEe-CCeee
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-------------KDLAKEYNI--LAYPTLYLFV-AGVRQ 140 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~-------------~~~~~~~~i--~~~Pt~~~~~-~g~~~ 140 (346)
+|+||++||++|++++|.+++++++++ +.++.|+.++. ..+.+.|++ .++|+.++++ +|++.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 888999999999999999999999984 77777776533 236678995 6999999998 88765
Q ss_pred -EEeeCCCCHHHHHHHHHHHcCC
Q 019115 141 -FQFFGERTRDVISAWVREKMTL 162 (346)
Q Consensus 141 -~~~~g~~~~~~l~~~i~~~~~~ 162 (346)
..+.|..+.+++.+.+.+.+..
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEEECCCCHHHHHHHHHHHHhh
Confidence 4799999999999999888744
No 79
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.55 E-value=1.9e-14 Score=107.72 Aligned_cols=85 Identities=24% Similarity=0.463 Sum_probs=66.8
Q ss_pred CCCcEEEEEecCCChhHhhhhHHHHH---HHHHccCCcEEEEEeCccc--------------------HhHHHHCCCCCC
Q 019115 72 KNRNVMVMFYANWCYWSKKLAPEFAA---AAKMLKGEADLVMVDAYLE--------------------KDLAKEYNILAY 128 (346)
Q Consensus 72 ~~~~~~v~F~a~wC~~C~~~~p~~~~---~~~~~~~~v~~~~v~~~~~--------------------~~~~~~~~i~~~ 128 (346)
+++++++.||++||++|+++.+.+.+ +...+++++.++.++++.. .++++.+||+++
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt 83 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT 83 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence 67899999999999999999999985 4445555688888888643 358899999999
Q ss_pred cEEEEEe-CCeeeEEeeCCCCHHHHHHHH
Q 019115 129 PTLYLFV-AGVRQFQFFGERTRDVISAWV 156 (346)
Q Consensus 129 Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i 156 (346)
||+++++ +|+.+.++.|..+.++|.+++
T Consensus 84 Pt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 84 PTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred CEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 9999998 898898999999999998765
No 80
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=3.5e-14 Score=129.23 Aligned_cols=182 Identities=26% Similarity=0.399 Sum_probs=132.4
Q ss_pred CcEEcChhcHHHHH-cCCCcEEEEEecCCChhHhhhhHHHHHHHHHcc--CCcEEEEEeCcccHhHHHHCCCCCCcEEEE
Q 019115 57 DVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLK--GEADLVMVDAYLEKDLAKEYNILAYPTLYL 133 (346)
Q Consensus 57 ~v~~l~~~~~~~~~-~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~--~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~ 133 (346)
.+.+++..+++... ..+..++|.||+|||+||+.+.|.|++++..++ ..+.++.+||+....+|++++|+++||+.+
T Consensus 145 ~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 224 (383)
T KOG0191|consen 145 EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKL 224 (383)
T ss_pred ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEE
Confidence 48889999999766 567789999999999999999999999999886 489999999999999999999999999999
Q ss_pred EeCCee-eEEeeCCCCHHHHHHHHHHHcCCC-----ceeccChh-HHHHhhc---------cCCeEEEEEecCCCCc---
Q 019115 134 FVAGVR-QFQFFGERTRDVISAWVREKMTLG-----TYSITTTD-EAERILT---------VESKLVLGFLHDLEGM--- 194 (346)
Q Consensus 134 ~~~g~~-~~~~~g~~~~~~l~~~i~~~~~~~-----~~~i~s~~-~~~~~~~---------~~~~~~v~f~~~~~~~--- 194 (346)
|.+|.. ...|.|.++.+.+.+|+.+..... +.+..+.+ -...+++ .....++.++.+|+..
T Consensus 225 f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (383)
T KOG0191|consen 225 FPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPEPELKEIEDKDTFSPTFLDTAEFLDSLEKKKNKFVKFYAPWCGHCGG 304 (383)
T ss_pred ecCCCcccccccccccHHHHHHHHHhhcCCCCCCcccccccCccccccchhhhhhhhhhhHHhhhhHhhhhcchhhcccc
Confidence 998867 778889999999999999998663 33332221 0011111 1224666777777765
Q ss_pred cHHHHHHHhcc----CCceeEEE---ecCHHHHhhcCCCCCCCCCeEEEEecCC
Q 019115 195 ESEELAAASKL----HSDVNFYQ---TTSADVAEFFHIHPKSKRPALIFLHLEA 241 (346)
Q Consensus 195 ~~~~~~~~a~~----~~~~~f~~---~~~~~~~~~~~v~~~~~~p~i~~~~~~~ 241 (346)
..+.+...+.. ...+.+.. .....++....++ .+|++.+++.+.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 355 (383)
T KOG0191|consen 305 FAPVYEDKAELGYPDLSKIKAAKLDCALLKSLCQKAIVR---GYPTIKLYNYGK 355 (383)
T ss_pred cchhHHHHHhccccccccceeeccccccccchhhHhhhh---cCceeEeecccc
Confidence 44455555432 22233332 2223356666665 589988887654
No 81
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.53 E-value=6.2e-14 Score=108.11 Aligned_cols=72 Identities=19% Similarity=0.232 Sum_probs=59.7
Q ss_pred cCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC--------CcEEEEEeCccc-------------------------H
Q 019115 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--------EADLVMVDAYLE-------------------------K 117 (346)
Q Consensus 71 ~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~--------~v~~~~v~~~~~-------------------------~ 117 (346)
.++++++|+|||+||++|++++|.+.++++++++ ++.++.|+.+++ .
T Consensus 23 ~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~ 102 (146)
T cd03008 23 LENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRR 102 (146)
T ss_pred hCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHH
Confidence 3689999999999999999999999998876643 588888887642 2
Q ss_pred hHHHHCCCCCCcEEEEEe-CCeeeEE
Q 019115 118 DLAKEYNILAYPTLYLFV-AGVRQFQ 142 (346)
Q Consensus 118 ~~~~~~~i~~~Pt~~~~~-~g~~~~~ 142 (346)
.++++|++.++|++++++ +|+++.+
T Consensus 103 ~l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 103 ELEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHHcCCCCCCEEEEECCCCcEEee
Confidence 477889999999999998 8865543
No 82
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.52 E-value=7.5e-14 Score=107.56 Aligned_cols=81 Identities=20% Similarity=0.327 Sum_probs=63.4
Q ss_pred cChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC---CcEEEEEeCccc---------------------
Q 019115 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLE--------------------- 116 (346)
Q Consensus 61 l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~--------------------- 116 (346)
++++.+...-.++++++|+||++||++|+++.|.+.++++++++ ++.++.|+.+.+
T Consensus 6 ~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~ 85 (131)
T cd03009 6 NDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDR 85 (131)
T ss_pred cCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCH
Confidence 34444443334789999999999999999999999999888764 566777776533
Q ss_pred ---HhHHHHCCCCCCcEEEEEe-CCeeeE
Q 019115 117 ---KDLAKEYNILAYPTLYLFV-AGVRQF 141 (346)
Q Consensus 117 ---~~~~~~~~i~~~Pt~~~~~-~g~~~~ 141 (346)
..++++|+|.++|++++++ +|+++.
T Consensus 86 ~~~~~~~~~~~v~~~P~~~lid~~G~i~~ 114 (131)
T cd03009 86 ERRSRLNRTFKIEGIPTLIILDADGEVVT 114 (131)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCCEEc
Confidence 3578899999999999998 886543
No 83
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.52 E-value=1.4e-13 Score=103.42 Aligned_cols=97 Identities=13% Similarity=0.100 Sum_probs=73.9
Q ss_pred ChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHH---HHHHHHccCCcEEEEEeCcccHhHHH--------HCCCCCCcE
Q 019115 62 NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLEKDLAK--------EYNILAYPT 130 (346)
Q Consensus 62 ~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~~~~~~~~--------~~~i~~~Pt 130 (346)
+++.+.....++|+++|+|+|+||++|+.+.+.. .++++.+..++.+++||.++.+++++ .||+.++|+
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt 83 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPL 83 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCE
Confidence 3556777888999999999999999999998743 35666666689999999998887765 358999999
Q ss_pred EEEEe-CCeeeEEeeCC-----CCHHHHHHHHHH
Q 019115 131 LYLFV-AGVRQFQFFGE-----RTRDVISAWVRE 158 (346)
Q Consensus 131 ~~~~~-~g~~~~~~~g~-----~~~~~l~~~i~~ 158 (346)
+++++ +|+.+....+. .+...+.+++.+
T Consensus 84 ~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (124)
T cd02955 84 NVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEK 117 (124)
T ss_pred EEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHH
Confidence 99998 88776554332 334455555544
No 84
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.51 E-value=4.3e-13 Score=107.13 Aligned_cols=89 Identities=10% Similarity=0.023 Sum_probs=70.5
Q ss_pred cHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEE------EEEeCcc-----------------------
Q 019115 65 NFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADL------VMVDAYL----------------------- 115 (346)
Q Consensus 65 ~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~------~~v~~~~----------------------- 115 (346)
.++.....||+++|+|||+||++|+.++|.+++++++ ++.+ ..||.++
T Consensus 51 ~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~ 127 (184)
T TIGR01626 51 PWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWS 127 (184)
T ss_pred eccHHHcCCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcc
Confidence 3333445699999999999999999999999999654 4555 6666653
Q ss_pred ------cHhHHHHCCCCCCcEE-EEEe-CCeeeEEeeCCCCHHHHHHHH
Q 019115 116 ------EKDLAKEYNILAYPTL-YLFV-AGVRQFQFFGERTRDVISAWV 156 (346)
Q Consensus 116 ------~~~~~~~~~i~~~Pt~-~~~~-~g~~~~~~~g~~~~~~l~~~i 156 (346)
+..+...||+.++|+. ++++ +|++...+.|..+.+++.+.+
T Consensus 128 ~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 128 QVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred eEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 2345678999999888 7887 999999999999998887733
No 85
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.51 E-value=1.7e-13 Score=94.28 Aligned_cols=73 Identities=16% Similarity=0.229 Sum_probs=61.0
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCeeeEEeeCC-CCHHHHHHH
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGE-RTRDVISAW 155 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~~l~~~ 155 (346)
-|.||++||++|+.+.|.+++++++++..+.++.|| +.+.+.+||+.++||+++ +|+.+ +.|. .+.+++.++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEI 74 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHH
Confidence 378999999999999999999999998788888887 345588999999999999 88655 7775 455777776
Q ss_pred H
Q 019115 156 V 156 (346)
Q Consensus 156 i 156 (346)
+
T Consensus 75 l 75 (76)
T TIGR00412 75 L 75 (76)
T ss_pred h
Confidence 5
No 86
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.50 E-value=2.3e-13 Score=113.57 Aligned_cols=104 Identities=13% Similarity=0.117 Sum_probs=82.2
Q ss_pred CcEEcChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcc-------c----HhHH-HHC
Q 019115 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E----KDLA-KEY 123 (346)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------~----~~~~-~~~ 123 (346)
.+.+++++.+...-.++++++|+|||+||++|+.+.|.+.++++++++ ++.++.|+|+. + .+++ +++
T Consensus 83 ~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~ 162 (236)
T PLN02399 83 TVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRF 162 (236)
T ss_pred EEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhc
Confidence 556677776654444689999999999999999999999999999987 69999999841 1 1222 222
Q ss_pred C----------------------------------CCCCcEEEEEe-CCeeeEEeeCCCCHHHHHHHHHHHc
Q 019115 124 N----------------------------------ILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKM 160 (346)
Q Consensus 124 ~----------------------------------i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (346)
+ +...|+.++++ +|+++.+|.|..+.++|.+.|++.+
T Consensus 163 g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 163 KAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred CCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 2 22358999998 9999999999999999999998876
No 87
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.50 E-value=2.4e-13 Score=113.66 Aligned_cols=95 Identities=16% Similarity=0.201 Sum_probs=78.1
Q ss_pred EcChhcHHHHHcCCCcE-EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCe
Q 019115 60 SLNGKNFSEFMGKNRNV-MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV 138 (346)
Q Consensus 60 ~l~~~~~~~~~~~~~~~-~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 138 (346)
.++.++.+.+....+++ ++.||++||++|+.+.|.+++++.+. +++.+..+|.+++++++++|||.++||++++++|+
T Consensus 119 ~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~ 197 (215)
T TIGR02187 119 GLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-DKILGEMIEANENPDLAEKYGVMSVPKIVINKGVE 197 (215)
T ss_pred CCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-CceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE
Confidence 34444444444434554 55599999999999999999999885 47999999999999999999999999999998884
Q ss_pred eeEEeeCCCCHHHHHHHHHH
Q 019115 139 RQFQFFGERTRDVISAWVRE 158 (346)
Q Consensus 139 ~~~~~~g~~~~~~l~~~i~~ 158 (346)
. +.|..+.+++.+|+.+
T Consensus 198 ~---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 198 E---FVGAYPEEQFLEYILS 214 (215)
T ss_pred E---EECCCCHHHHHHHHHh
Confidence 2 8899999999999875
No 88
>PHA02125 thioredoxin-like protein
Probab=99.49 E-value=2.9e-13 Score=93.01 Aligned_cols=69 Identities=26% Similarity=0.347 Sum_probs=57.6
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCeeeEEeeCC-CCHHHHHH
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGE-RTRDVISA 154 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~~l~~ 154 (346)
++.|||+||++|+.+.|.++++. +.++.||++++++++++|+|.++||++ +|+.+.++.|. .+..+|.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~ 71 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKE 71 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHH
Confidence 78999999999999999997653 468899999999999999999999987 67777788885 33355544
No 89
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.48 E-value=1.6e-13 Score=105.73 Aligned_cols=70 Identities=23% Similarity=0.383 Sum_probs=58.8
Q ss_pred cCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC---CcEEEEEeCccc-------------------------HhHHHH
Q 019115 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLE-------------------------KDLAKE 122 (346)
Q Consensus 71 ~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~-------------------------~~~~~~ 122 (346)
.++++++|+||++||++|+.++|.++++++++++ ++.++.|+++.+ ..+++.
T Consensus 15 ~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 94 (132)
T cd02964 15 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQ 94 (132)
T ss_pred hCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHH
Confidence 3689999999999999999999999999998875 477777777653 246677
Q ss_pred CCCCCCcEEEEEe-CCeee
Q 019115 123 YNILAYPTLYLFV-AGVRQ 140 (346)
Q Consensus 123 ~~i~~~Pt~~~~~-~g~~~ 140 (346)
|+|.++|++++++ +|+++
T Consensus 95 ~~v~~iPt~~lid~~G~iv 113 (132)
T cd02964 95 FKVEGIPTLVVLKPDGDVV 113 (132)
T ss_pred cCCCCCCEEEEECCCCCEE
Confidence 9999999999998 78544
No 90
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.48 E-value=2.7e-13 Score=98.18 Aligned_cols=66 Identities=32% Similarity=0.549 Sum_probs=56.3
Q ss_pred CCcEEEEEecCCChhHhhhhHHHHHHHHHcc--CCcEEEEEeCccc-------------------------HhHHHHCCC
Q 019115 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLK--GEADLVMVDAYLE-------------------------KDLAKEYNI 125 (346)
Q Consensus 73 ~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~--~~v~~~~v~~~~~-------------------------~~~~~~~~i 125 (346)
||+++|+|||+||++|+++.|.+.++.++++ +++.++.|+++++ ..+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 6899999999999999999999999999999 5899999988753 357788999
Q ss_pred CCCcEEEEEe-CCe
Q 019115 126 LAYPTLYLFV-AGV 138 (346)
Q Consensus 126 ~~~Pt~~~~~-~g~ 138 (346)
.++|++++++ +|+
T Consensus 81 ~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NGIPTLVLLDPDGK 94 (95)
T ss_dssp TSSSEEEEEETTSB
T ss_pred CcCCEEEEECCCCC
Confidence 9999999998 774
No 91
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.48 E-value=2.6e-13 Score=111.55 Aligned_cols=105 Identities=15% Similarity=0.142 Sum_probs=80.5
Q ss_pred CcEEcChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcc-------c----HhHHHHCC
Q 019115 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E----KDLAKEYN 124 (346)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------~----~~~~~~~~ 124 (346)
.+.+++++.+.....++++++|+|||+||++|++++|.+.++++++++ ++.++.|+|++ + ..++++++
T Consensus 23 ~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~ 102 (199)
T PTZ00056 23 TVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNK 102 (199)
T ss_pred EEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcC
Confidence 555666665554444789999999999999999999999999999987 79999998742 1 23444444
Q ss_pred CC------------------------------------CCc---EEEEEe-CCeeeEEeeCCCCHHHHHHHHHHHcC
Q 019115 125 IL------------------------------------AYP---TLYLFV-AGVRQFQFFGERTRDVISAWVREKMT 161 (346)
Q Consensus 125 i~------------------------------------~~P---t~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (346)
+. .+| +.++++ +|+++.++.|..+.+.+.+.|++.+.
T Consensus 103 ~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~ 179 (199)
T PTZ00056 103 IKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLG 179 (199)
T ss_pred CCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 31 122 577776 99899999999999999999987763
No 92
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.48 E-value=4.6e-13 Score=109.51 Aligned_cols=110 Identities=15% Similarity=0.272 Sum_probs=76.0
Q ss_pred CCCCCCCCCcCCCcEEcChhcHHH--HHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEe----------
Q 019115 45 NNNHTWPLLYAKDVVSLNGKNFSE--FMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD---------- 112 (346)
Q Consensus 45 ~~~~~~~~~~~~~v~~l~~~~~~~--~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~---------- 112 (346)
..|...|.+ .+.+++++++.. ...++++++|+||++||++|+++.|.+.++.++.+.++.++..+
T Consensus 47 ~vG~~aP~f---~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~ 123 (189)
T TIGR02661 47 DVGDAAPIF---NLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLK 123 (189)
T ss_pred CCCCcCCCc---EecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHH
Confidence 445555655 555666766553 33478999999999999999999999999987654344333311
Q ss_pred ---C-----cccHhHHHHCCCCCCcEEEEEe-CCeeeEEeeCC-CCHHHHHHHHHHH
Q 019115 113 ---A-----YLEKDLAKEYNILAYPTLYLFV-AGVRQFQFFGE-RTRDVISAWVREK 159 (346)
Q Consensus 113 ---~-----~~~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~-~~~~~l~~~i~~~ 159 (346)
. ....++++.|++.++|+.++++ +|++..+ |. ...+.+.+.++..
T Consensus 124 ~~~~~~~~~~~~~~i~~~y~v~~~P~~~lID~~G~I~~~--g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 124 DHELGGERYVVSAEIGMAFQVGKIPYGVLLDQDGKIRAK--GLTNTREHLESLLEAD 178 (189)
T ss_pred hcCCCcceeechhHHHHhccCCccceEEEECCCCeEEEc--cCCCCHHHHHHHHHHH
Confidence 0 1134678899999999999988 8865543 43 4556777777543
No 93
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.48 E-value=5.1e-13 Score=114.71 Aligned_cols=88 Identities=15% Similarity=0.190 Sum_probs=73.8
Q ss_pred CCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcc-----------cHhHHHHCCCCCCcEEEEEeC-Cee
Q 019115 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-----------EKDLAKEYNILAYPTLYLFVA-GVR 139 (346)
Q Consensus 72 ~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~-----------~~~~~~~~~i~~~Pt~~~~~~-g~~ 139 (346)
.+++++|+|||+||++|+.+.|.+++++++++ +.+..|+++. +..+++++||.++||++++++ |+.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence 47899999999999999999999999999985 6666666654 357899999999999999984 544
Q ss_pred e-EEeeCCCCHHHHHHHHHHHcC
Q 019115 140 Q-FQFFGERTRDVISAWVREKMT 161 (346)
Q Consensus 140 ~-~~~~g~~~~~~l~~~i~~~~~ 161 (346)
+ ....|..+.++|.+.+.....
T Consensus 243 v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 243 FTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEEeCCCCHHHHHHHHHHHhc
Confidence 4 456699999999999987654
No 94
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.47 E-value=3e-13 Score=128.30 Aligned_cols=97 Identities=25% Similarity=0.438 Sum_probs=81.3
Q ss_pred ChhcHHHHH----cCCCcEEEEEecCCChhHhhhhHHH---HHHHHHccCCcEEEEEeCcc----cHhHHHHCCCCCCcE
Q 019115 62 NGKNFSEFM----GKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYL----EKDLAKEYNILAYPT 130 (346)
Q Consensus 62 ~~~~~~~~~----~~~~~~~v~F~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~~----~~~~~~~~~i~~~Pt 130 (346)
+.+++++.+ .++|+++|+|||+||++|+.+.+.. .++.++++ ++.++++|+++ +.+++++|++.++||
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt 537 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPT 537 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCE
Confidence 456666544 4579999999999999999998875 66777776 68899999975 368999999999999
Q ss_pred EEEEe-CCee--eEEeeCCCCHHHHHHHHHHH
Q 019115 131 LYLFV-AGVR--QFQFFGERTRDVISAWVREK 159 (346)
Q Consensus 131 ~~~~~-~g~~--~~~~~g~~~~~~l~~~i~~~ 159 (346)
+++|+ +|++ ..++.|..+.+++.+++++.
T Consensus 538 ~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 538 ILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred EEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 99998 8876 36788999999999999875
No 95
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.47 E-value=4.3e-13 Score=102.16 Aligned_cols=97 Identities=16% Similarity=0.240 Sum_probs=74.9
Q ss_pred CcEEcChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEe---------------------Ccc
Q 019115 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD---------------------AYL 115 (346)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~---------------------~~~ 115 (346)
.+.+++++.+.....++++++|.||++||++|+.+.|.+.++++++. +..+.+| ++.
T Consensus 4 ~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (123)
T cd03011 4 TATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDP 81 (123)
T ss_pred eeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECC
Confidence 34456666676666677999999999999999999999999988742 2222222 234
Q ss_pred cHhHHHHCCCCCCcEEEEEeCCeeeEEeeCCCCHHHHHHH
Q 019115 116 EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAW 155 (346)
Q Consensus 116 ~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~ 155 (346)
+.+++++|+|.++|+++++++|.+...+.|..+.+.+.+.
T Consensus 82 ~~~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 82 DGVISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred CcHHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHhh
Confidence 5679999999999999999844488889999999988653
No 96
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.47 E-value=4.2e-13 Score=135.54 Aligned_cols=115 Identities=19% Similarity=0.203 Sum_probs=90.0
Q ss_pred CCCCCCCCCcCCCcEEcChhcHHH-HHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeC---------
Q 019115 45 NNNHTWPLLYAKDVVSLNGKNFSE-FMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDA--------- 113 (346)
Q Consensus 45 ~~~~~~~~~~~~~v~~l~~~~~~~-~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~--------- 113 (346)
..++..|++.. ....++++.++. ...++|+++|+|||+||++|+++.|.++++++++++ ++.++.|.+
T Consensus 392 ~~g~~~p~f~~-~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~ 470 (1057)
T PLN02919 392 KTATKVPEFPP-KLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDL 470 (1057)
T ss_pred ccCCcCCCCcc-cccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccH
Confidence 34566666632 222345544431 223689999999999999999999999999999987 588887742
Q ss_pred ------------------cccHhHHHHCCCCCCcEEEEEe-CCeeeEEeeCCCCHHHHHHHHHHHc
Q 019115 114 ------------------YLEKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKM 160 (346)
Q Consensus 114 ------------------~~~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (346)
+.+..+.++|+|.++|++++++ +|+++.++.|....+.+.+++...+
T Consensus 471 ~~~~~~~~~~~i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l 536 (1057)
T PLN02919 471 EAIRNAVLRYNISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAAL 536 (1057)
T ss_pred HHHHHHHHHhCCCccEEECCchHHHHhcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHH
Confidence 2244677899999999999996 9999999999999999999999886
No 97
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.45 E-value=5.6e-13 Score=104.75 Aligned_cols=88 Identities=28% Similarity=0.395 Sum_probs=73.7
Q ss_pred cChhcHHHHHcCCCcEEEEEecC-CChhHhhhhHHHHHHHHHccC-CcEEEEEeCcc---------------------cH
Q 019115 61 LNGKNFSEFMGKNRNVMVMFYAN-WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------EK 117 (346)
Q Consensus 61 l~~~~~~~~~~~~~~~~v~F~a~-wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~---------------------~~ 117 (346)
.+++.+...-.++++++|.||++ ||++|+.++|.+.++++++++ ++.++.|..+. +.
T Consensus 16 ~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~ 95 (146)
T PF08534_consen 16 LDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDG 95 (146)
T ss_dssp TTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTS
T ss_pred CCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHH
Confidence 66666654446889999999999 999999999999999999776 68888887643 34
Q ss_pred hHHHHCCCC---------CCcEEEEEe-CCeeeEEeeCCCC
Q 019115 118 DLAKEYNIL---------AYPTLYLFV-AGVRQFQFFGERT 148 (346)
Q Consensus 118 ~~~~~~~i~---------~~Pt~~~~~-~g~~~~~~~g~~~ 148 (346)
.+.++|++. ++|++++++ +|++...+.|..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 96 ALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp HHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred HHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 678899998 999999998 8988888888766
No 98
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.44 E-value=5.8e-13 Score=99.89 Aligned_cols=85 Identities=33% Similarity=0.469 Sum_probs=72.0
Q ss_pred cChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCccc-----------------------
Q 019115 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE----------------------- 116 (346)
Q Consensus 61 l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~----------------------- 116 (346)
++++.+...-..+++++|.||++||++|+...+.+.++.+++++ ++.++.|+++.+
T Consensus 7 ~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (116)
T cd02966 7 LDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPD 86 (116)
T ss_pred CCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCc
Confidence 44444444333588999999999999999999999999999864 799999999885
Q ss_pred HhHHHHCCCCCCcEEEEEe-CCeeeEEeeC
Q 019115 117 KDLAKEYNILAYPTLYLFV-AGVRQFQFFG 145 (346)
Q Consensus 117 ~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g 145 (346)
..+++.|++.++|++++++ +|+++..+.|
T Consensus 87 ~~~~~~~~~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 87 GELAKAYGVRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred chHHHhcCcCccceEEEECCCCcEEEEecC
Confidence 7889999999999999998 8888888766
No 99
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.41 E-value=1e-12 Score=98.64 Aligned_cols=68 Identities=25% Similarity=0.336 Sum_probs=53.1
Q ss_pred CCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCc---c-----------------cHhHHHHCCCCCCcEE
Q 019115 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY---L-----------------EKDLAKEYNILAYPTL 131 (346)
Q Consensus 72 ~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~---~-----------------~~~~~~~~~i~~~Pt~ 131 (346)
++++++|+||++||++|+++.|.++++++++++++.++.+.-+ + +.++.+.|+++++|++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 4789999999999999999999999999888766766666211 1 1345667788888888
Q ss_pred EEEe-CCee
Q 019115 132 YLFV-AGVR 139 (346)
Q Consensus 132 ~~~~-~g~~ 139 (346)
++++ +|++
T Consensus 100 ~vid~~G~v 108 (114)
T cd02967 100 VLLDEAGVI 108 (114)
T ss_pred EEECCCCeE
Confidence 8887 6754
No 100
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.40 E-value=2e-12 Score=98.83 Aligned_cols=75 Identities=20% Similarity=0.320 Sum_probs=64.5
Q ss_pred CCCcEEEEEecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCc---------------------------ccHhHHHHC
Q 019115 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY---------------------------LEKDLAKEY 123 (346)
Q Consensus 72 ~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~---------------------------~~~~~~~~~ 123 (346)
++++++|+||++||++|+.+.|.++++++++++ ++.++.|+.. .+..+++.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 679999999999999999999999999999986 7888888642 123567789
Q ss_pred CCCCCcEEEEEe-CCeeeEEeeCC
Q 019115 124 NILAYPTLYLFV-AGVRQFQFFGE 146 (346)
Q Consensus 124 ~i~~~Pt~~~~~-~g~~~~~~~g~ 146 (346)
++.++|++++++ +|+++..+.|+
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 999999999997 89888888875
No 101
>PLN02412 probable glutathione peroxidase
Probab=99.38 E-value=4.6e-12 Score=101.43 Aligned_cols=105 Identities=12% Similarity=0.124 Sum_probs=80.9
Q ss_pred CcEEcChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcc-------c-HhH----HHHC
Q 019115 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E-KDL----AKEY 123 (346)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------~-~~~----~~~~ 123 (346)
.+.+++++.+...-.++++++|+||++||++|+++.|.+.++++++++ ++.++.|+++. . .++ ++++
T Consensus 13 ~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~ 92 (167)
T PLN02412 13 TVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRF 92 (167)
T ss_pred EEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHcc
Confidence 445566665543333679999999999999999999999999999987 79999998742 1 111 2221
Q ss_pred C----------------------------------CCCCcEEEEEe-CCeeeEEeeCCCCHHHHHHHHHHHcC
Q 019115 124 N----------------------------------ILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMT 161 (346)
Q Consensus 124 ~----------------------------------i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (346)
+ +...|+.++++ +|+++.++.|..+.+.+.+.|++.+.
T Consensus 93 ~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 93 KAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 1 34468999997 99999999999999999999988763
No 102
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.36 E-value=7e-12 Score=99.17 Aligned_cols=102 Identities=15% Similarity=0.143 Sum_probs=77.1
Q ss_pred cEEcChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCc-------cc----HhHHHH-CC
Q 019115 58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY-------LE----KDLAKE-YN 124 (346)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~-------~~----~~~~~~-~~ 124 (346)
+.+++++.+...-.++|+++|.|||+||++|++.+|.+.++++++++ ++.++.|+|. +. .+++++ ++
T Consensus 7 l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~ 86 (153)
T TIGR02540 7 VKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYG 86 (153)
T ss_pred eECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcC
Confidence 34455555554444789999999999999999999999999999987 7999999872 11 223322 22
Q ss_pred C--------------------------CCCcE----EEEEe-CCeeeEEeeCCCCHHHHHHHHHHH
Q 019115 125 I--------------------------LAYPT----LYLFV-AGVRQFQFFGERTRDVISAWVREK 159 (346)
Q Consensus 125 i--------------------------~~~Pt----~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~ 159 (346)
+ .+.|+ .++++ +|++...|.|..+.+.+.+.|++.
T Consensus 87 ~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 87 VTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 1 13686 77776 899999999999999998888764
No 103
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.35 E-value=2.4e-10 Score=93.45 Aligned_cols=167 Identities=20% Similarity=0.314 Sum_probs=127.8
Q ss_pred hhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCC-eeeEEeeCC-CCHHHHHHHHHHHcCCCceec
Q 019115 90 KLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG-VRQFQFFGE-RTRDVISAWVREKMTLGTYSI 167 (346)
Q Consensus 90 ~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g-~~~~~~~g~-~~~~~l~~~i~~~~~~~~~~i 167 (346)
.....|.++|+.+.+.+.|+.+. +.++++++++.. |++++|+++ +....|.|. .+.+.|.+||....-|.+.++
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~~ 82 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLVPEL 82 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSCEEE
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhcccccccc
Confidence 35568899999999889999997 678999999998 999999964 457889998 899999999999999999998
Q ss_pred cChhHHHHhhccCCe-EEEEEecCCCCc---cHHHHHHHh-ccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEec
Q 019115 168 TTTDEAERILTVESK-LVLGFLHDLEGM---ESEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHL 239 (346)
Q Consensus 168 ~s~~~~~~~~~~~~~-~~v~f~~~~~~~---~~~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~v~~~~~~p~i~~~~~ 239 (346)
+ .+.+..+...... +++.|....... ....+..+| +.++++.|..+ ..+.+.+.+|++. ...|+++++..
T Consensus 83 t-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~-~~~P~~vi~~~ 160 (184)
T PF13848_consen 83 T-PENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDE-DDLPALVIFDS 160 (184)
T ss_dssp S-TTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTT-SSSSEEEEEET
T ss_pred c-hhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCC-ccCCEEEEEEC
Confidence 5 5678888887755 444444332211 334455666 67888888765 2468899999974 35899999985
Q ss_pred CCCcc-ccCCCCCCHHHHHHHHhc
Q 019115 240 EAGKA-TPFRHQFTRLAIANFVTH 262 (346)
Q Consensus 240 ~~~~~-~~y~g~~~~~~l~~fi~~ 262 (346)
..+.. ..+.|+++.++|.+|+++
T Consensus 161 ~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 161 NKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp TTSEEEE--SSCGCHHHHHHHHHH
T ss_pred CCCcEEcCCCCCCCHHHHHHHhcC
Confidence 54332 334789999999999963
No 104
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.35 E-value=2.5e-11 Score=91.03 Aligned_cols=105 Identities=7% Similarity=0.140 Sum_probs=88.6
Q ss_pred EcChhcHHHHHcCCCcEEEEEec--CCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcccHhHHHHCCCCCCcEEEEEeC
Q 019115 60 SLNGKNFSEFMGKNRNVMVMFYA--NWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136 (346)
Q Consensus 60 ~l~~~~~~~~~~~~~~~~v~F~a--~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 136 (346)
.++..+++..+..+...++.|-. .-++-+.-..=.+.+++++|.+ ++.+++||++++++++.+|||.++||+++|++
T Consensus 21 ~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~Fkd 100 (132)
T PRK11509 21 PVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTG 100 (132)
T ss_pred ccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEEC
Confidence 45667788888666666555543 2466677777789999999985 69999999999999999999999999999999
Q ss_pred CeeeEEeeCCCCHHHHHHHHHHHcCCCc
Q 019115 137 GVRQFQFFGERTRDVISAWVREKMTLGT 164 (346)
Q Consensus 137 g~~~~~~~g~~~~~~l~~~i~~~~~~~~ 164 (346)
|+.+..+.|.++.+.+.++|.+.+..+.
T Consensus 101 Gk~v~~i~G~~~k~~l~~~I~~~L~~~~ 128 (132)
T PRK11509 101 GNYRGVLNGIHPWAELINLMRGLVEPQQ 128 (132)
T ss_pred CEEEEEEeCcCCHHHHHHHHHHHhcCcC
Confidence 9999999999999999999999986554
No 105
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.35 E-value=3.5e-12 Score=100.74 Aligned_cols=96 Identities=15% Similarity=0.108 Sum_probs=70.8
Q ss_pred EEcChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcc-------c----HhHHHH-CC-
Q 019115 59 VSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E----KDLAKE-YN- 124 (346)
Q Consensus 59 ~~l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------~----~~~~~~-~~- 124 (346)
.+++++.+...-.++++++|+|||+||+ |+.++|.++++++++++ ++.++.|+++. . .+++++ ++
T Consensus 8 ~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~ 86 (152)
T cd00340 8 KDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGV 86 (152)
T ss_pred ECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCC
Confidence 3445554443334689999999999999 99999999999999976 79999997642 1 233332 22
Q ss_pred ----------------------CCCCc-----------EEEEEe-CCeeeEEeeCCCCHHHHHHH
Q 019115 125 ----------------------ILAYP-----------TLYLFV-AGVRQFQFFGERTRDVISAW 155 (346)
Q Consensus 125 ----------------------i~~~P-----------t~~~~~-~g~~~~~~~g~~~~~~l~~~ 155 (346)
+.++| |.++++ +|+++.++.|..+.+++.+.
T Consensus 87 ~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 87 TFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 23456 678886 99999999999988877653
No 106
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.30 E-value=8.6e-12 Score=83.88 Aligned_cols=60 Identities=22% Similarity=0.335 Sum_probs=53.5
Q ss_pred EEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCe
Q 019115 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV 138 (346)
Q Consensus 76 ~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 138 (346)
-++.||++||++|+.+.+.++++++... ++.+..+|.++++++++++|+.++||+++ +|+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~-~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~ 61 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP-NISAEMIDAAEFPDLADEYGVMSVPAIVI--NGK 61 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC-ceEEEEEEcccCHhHHHHcCCcccCEEEE--CCE
Confidence 4678999999999999999999987643 79999999999999999999999999866 664
No 107
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.30 E-value=4.5e-11 Score=89.52 Aligned_cols=93 Identities=13% Similarity=0.169 Sum_probs=77.6
Q ss_pred HHHcCCCcEEEEEecCCChhHhhhhHH-H--HHHHHHccCCcEEEEEeCc--ccHhHHHHCCCCCCcEEEEEe--CCeee
Q 019115 68 EFMGKNRNVMVMFYANWCYWSKKLAPE-F--AAAAKMLKGEADLVMVDAY--LEKDLAKEYNILAYPTLYLFV--AGVRQ 140 (346)
Q Consensus 68 ~~~~~~~~~~v~F~a~wC~~C~~~~p~-~--~~~~~~~~~~v~~~~v~~~--~~~~~~~~~~i~~~Pt~~~~~--~g~~~ 140 (346)
....++|+++|+|+++||++|+.+... | .++.+.++.+..+..+|.+ +..++++.|++.++|++++++ +|+.+
T Consensus 12 ~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l 91 (114)
T cd02958 12 EAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVL 91 (114)
T ss_pred HHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEe
Confidence 344678999999999999999999764 3 4455566557888888886 456899999999999999997 58889
Q ss_pred EEeeCCCCHHHHHHHHHHHc
Q 019115 141 FQFFGERTRDVISAWVREKM 160 (346)
Q Consensus 141 ~~~~g~~~~~~l~~~i~~~~ 160 (346)
.+..|..+++.+.+.+++..
T Consensus 92 ~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 92 KVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred EEEcCCCCHHHHHHHHHHHH
Confidence 99999999999999888764
No 108
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.27 E-value=4.9e-11 Score=84.40 Aligned_cols=76 Identities=20% Similarity=0.245 Sum_probs=64.3
Q ss_pred CCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCeeeEEeeCCCCHHH
Q 019115 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDV 151 (346)
Q Consensus 72 ~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~ 151 (346)
++..-+..|+++||++|....+.++++++++. ++.+..+|.++.++++++|||.++||+++ +|+... .|..+.++
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~--~G~~~~~e 85 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFG--FGRMTLEE 85 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEE--eCCCCHHH
Confidence 45567888999999999999999999998865 79999999999999999999999999965 785544 58666555
Q ss_pred H
Q 019115 152 I 152 (346)
Q Consensus 152 l 152 (346)
+
T Consensus 86 ~ 86 (89)
T cd03026 86 I 86 (89)
T ss_pred H
Confidence 4
No 109
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.26 E-value=7.7e-11 Score=95.09 Aligned_cols=107 Identities=20% Similarity=0.272 Sum_probs=80.0
Q ss_pred EEcChhcHHHHH-cCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcc---------------------
Q 019115 59 VSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL--------------------- 115 (346)
Q Consensus 59 ~~l~~~~~~~~~-~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~--------------------- 115 (346)
.+.+++.+.... .++++++|+||++||+.|....+.+.++++++++ ++.++.|+++.
T Consensus 10 ~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~ 89 (171)
T cd02969 10 PDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGY 89 (171)
T ss_pred cCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCC
Confidence 344444444222 3778999999999999999999999999999975 79999988753
Q ss_pred --------cHhHHHHCCCCCCcEEEEEe-CCeeeEEe---------eCCCCHHHHHHHHHHHcCCCce
Q 019115 116 --------EKDLAKEYNILAYPTLYLFV-AGVRQFQF---------FGERTRDVISAWVREKMTLGTY 165 (346)
Q Consensus 116 --------~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~---------~g~~~~~~l~~~i~~~~~~~~~ 165 (346)
+..+++.|++...|++++++ +|+++... .+..+.+.+.+-|...+.....
T Consensus 90 ~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 157 (171)
T cd02969 90 PFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPV 157 (171)
T ss_pred CceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCC
Confidence 12467789999999999998 88665442 1234667888888887755443
No 110
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=99.26 E-value=8.1e-11 Score=85.49 Aligned_cols=95 Identities=20% Similarity=0.403 Sum_probs=85.0
Q ss_pred eeccChhHHHHhhccCCeEEEEEecCCCCccHHHHHHHh-ccCCceeEEEecCHHHHhhcCCCCCCCCCeEEEEecCCCc
Q 019115 165 YSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGK 243 (346)
Q Consensus 165 ~~i~s~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~~~~~~~v~~~~~~p~i~~~~~~~~~ 243 (346)
.++.+.++++.++..+++++|+|+.+.+++....|..+| .+++.+.|+.+.+.++++++++. .|++++|++.++.
T Consensus 2 ~~i~s~~~l~~~~~~~~~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~~~~~~~~~~~~~----~~~i~l~~~~~~~ 77 (97)
T cd02981 2 KELTSKEELEKFLDKDDVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHTSDKEVAKKLKVK----PGSVVLFKPFEEE 77 (97)
T ss_pred eecCCHHHHHHHhccCCeEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEEChHHHHHHcCCC----CCceEEeCCcccC
Confidence 467888899999999999999999998889999999988 67789999999999999998886 4999999987778
Q ss_pred cccCCCCCCHHHHHHHHhcc
Q 019115 244 ATPFRHQFTRLAIANFVTHT 263 (346)
Q Consensus 244 ~~~y~g~~~~~~l~~fi~~~ 263 (346)
+..|+|+.+.++|.+||..+
T Consensus 78 ~~~y~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 78 PVEYDGEFTEESLVEFIKDN 97 (97)
T ss_pred CccCCCCCCHHHHHHHHHhC
Confidence 88999999999999999754
No 111
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.24 E-value=2.2e-12 Score=103.64 Aligned_cols=105 Identities=19% Similarity=0.350 Sum_probs=94.4
Q ss_pred CcEEcChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcccHhHHHHCCCCCCcEEEEEe
Q 019115 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (346)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~ 135 (346)
.+..++.+|....+. .-|++.|+||||+.|+...|+|.+.+.--.+ +|.++.||+..++.+.-+|-+...||++...
T Consensus 25 ~~~~~~eenw~~~l~--gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvk 102 (248)
T KOG0913|consen 25 KLTRIDEENWKELLT--GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVK 102 (248)
T ss_pred eeEEecccchhhhhc--hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEee
Confidence 678899999998863 3599999999999999999999999887666 8999999999999999999999999999999
Q ss_pred CCeeeEEeeCCCCHHHHHHHHHHHcCCCc
Q 019115 136 AGVRQFQFFGERTRDVISAWVREKMTLGT 164 (346)
Q Consensus 136 ~g~~~~~~~g~~~~~~l~~~i~~~~~~~~ 164 (346)
+| +..+|.|.++.+.+.+|+...-...+
T Consensus 103 DG-eFrrysgaRdk~dfisf~~~r~w~~i 130 (248)
T KOG0913|consen 103 DG-EFRRYSGARDKNDFISFEEHREWQSI 130 (248)
T ss_pred cc-ccccccCcccchhHHHHHHhhhhhcc
Confidence 99 88999999999999999987654333
No 112
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.22 E-value=7.1e-11 Score=96.14 Aligned_cols=104 Identities=12% Similarity=0.142 Sum_probs=76.4
Q ss_pred CcEEcChhcHHHHHcCCCcE-EEEEecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcc-------c-H---hH-HHH
Q 019115 57 DVVSLNGKNFSEFMGKNRNV-MVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E-K---DL-AKE 122 (346)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~-~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------~-~---~~-~~~ 122 (346)
.+.+++++.+...-.+++++ ++.+||+||++|++++|.++++++++++ ++.++.|+|+. + . .+ .++
T Consensus 24 ~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~ 103 (183)
T PTZ00256 24 EAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKK 103 (183)
T ss_pred EeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHh
Confidence 45556666555434467765 4556999999999999999999999987 79999998741 0 1 11 112
Q ss_pred C------------------------------------CCCCCcE---EEEEe-CCeeeEEeeCCCCHHHHHHHHHHHc
Q 019115 123 Y------------------------------------NILAYPT---LYLFV-AGVRQFQFFGERTRDVISAWVREKM 160 (346)
Q Consensus 123 ~------------------------------------~i~~~Pt---~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (346)
+ ++.++|+ .++++ +|+++.+|.|..+.+.+.+.|.+.+
T Consensus 104 ~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll 181 (183)
T PTZ00256 104 FNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLL 181 (183)
T ss_pred cCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHh
Confidence 1 3446784 57776 9999999999999999988888765
No 113
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.21 E-value=4.7e-11 Score=89.56 Aligned_cols=82 Identities=12% Similarity=0.096 Sum_probs=55.9
Q ss_pred HHHHHcCCCcEEEEEecCCChhHhhhhHHH---HHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEe-CCeeeE
Q 019115 66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV-AGVRQF 141 (346)
Q Consensus 66 ~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~-~g~~~~ 141 (346)
+.....++|+++|+|+++||++|+++...+ .++.+..+.++..+.++.+....-....+ .++||+++++ +|+++.
T Consensus 16 l~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi~ 94 (130)
T cd02960 16 LYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVRA 94 (130)
T ss_pred HHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCcc
Confidence 344557899999999999999999999765 33444444356666666542211111234 6899999998 887777
Q ss_pred EeeCCCC
Q 019115 142 QFFGERT 148 (346)
Q Consensus 142 ~~~g~~~ 148 (346)
+..|..+
T Consensus 95 ~i~Gy~~ 101 (130)
T cd02960 95 DITGRYS 101 (130)
T ss_pred ccccccc
Confidence 7777543
No 114
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=99.21 E-value=2.5e-10 Score=83.46 Aligned_cols=97 Identities=13% Similarity=0.265 Sum_probs=86.1
Q ss_pred ceeccChhHHHHhhc-cCCeEEEEEecCCCCccHHHHHHHh-ccCCceeEEEecCHHHHhhcCCCCCCCCCeEEEEecCC
Q 019115 164 TYSITTTDEAERILT-VESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEA 241 (346)
Q Consensus 164 ~~~i~s~~~~~~~~~-~~~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~~~~~~~v~~~~~~p~i~~~~~~~ 241 (346)
+..+.+.++++.++. ++++.+|+||.+..++....|.++| .+++++.|+.+.++++.+.+++. .|+++++++.+
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~~----~~~i~l~~~~~ 77 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFATFDSKVAKKLGLK----MNEVDFYEPFM 77 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEECcHHHHHHcCCC----CCcEEEeCCCC
Confidence 567889999999999 8999999999988888999999988 57799999999999999999886 59999998866
Q ss_pred CccccC-CCCCCHHHHHHHHhccC
Q 019115 242 GKATPF-RHQFTRLAIANFVTHTK 264 (346)
Q Consensus 242 ~~~~~y-~g~~~~~~l~~fi~~~~ 264 (346)
+....| .|..+.++|.+||..++
T Consensus 78 e~~~~y~~g~~~~~~l~~fi~~~~ 101 (102)
T cd03066 78 EEPVTIPDKPYSEEELVDFVEEHK 101 (102)
T ss_pred CCCcccCCCCCCHHHHHHHHHHhc
Confidence 677889 88889999999998764
No 115
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=99.17 E-value=3.1e-10 Score=83.19 Aligned_cols=95 Identities=18% Similarity=0.312 Sum_probs=83.2
Q ss_pred ceeccChhHHHHhhccCCeEEEEEecCCCCccHHHHHHHh-ccCCceeEEEecCHHHHhhcCCCCCCCCCeEEEEec---
Q 019115 164 TYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHL--- 239 (346)
Q Consensus 164 ~~~i~s~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~~~~~~~v~~~~~~p~i~~~~~--- 239 (346)
+.++.+.++++.++..++..+|+||.+..++..+.|.++| .+++++.|+.+.+..+++.+++ . |++++|++
T Consensus 2 ~~~i~s~~~l~~f~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~-~----~~ivl~~p~~~ 76 (104)
T cd03069 2 SVELRTEAEFEKFLSDDDASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHTSDKQLLEKYGY-G----EGVVLFRPPRL 76 (104)
T ss_pred ccccCCHHHHHHHhccCCcEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEEChHHHHHhcCC-C----CceEEEechhh
Confidence 4678899999999999999999999988888999999988 6779999999999999999988 4 88999954
Q ss_pred ---CCCccccCCCCCCHHHHHHHHhcc
Q 019115 240 ---EAGKATPFRHQFTRLAIANFVTHT 263 (346)
Q Consensus 240 ---~~~~~~~y~g~~~~~~l~~fi~~~ 263 (346)
.++....|+|+++.++|.+||..+
T Consensus 77 ~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 77 SNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hcccCcccccccCcCCHHHHHHHHHhh
Confidence 445677899999999999999865
No 116
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.16 E-value=2.2e-10 Score=104.91 Aligned_cols=100 Identities=20% Similarity=0.321 Sum_probs=81.5
Q ss_pred EEcChh-cHHHHHcCCC--cEEEEEecCCChhHhhhhHHHH---HHHHHccCCcEEEEEeCccc----HhHHHHCCCCCC
Q 019115 59 VSLNGK-NFSEFMGKNR--NVMVMFYANWCYWSKKLAPEFA---AAAKMLKGEADLVMVDAYLE----KDLAKEYNILAY 128 (346)
Q Consensus 59 ~~l~~~-~~~~~~~~~~--~~~v~F~a~wC~~C~~~~p~~~---~~~~~~~~~v~~~~v~~~~~----~~~~~~~~i~~~ 128 (346)
..++.. ++++.+.+++ +|+|+|||+||-.||.+.+..- +...+.+ ++...++|.+++ .++-++||+-+.
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lLk~~~~~G~ 535 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALLKRLGVFGV 535 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence 344444 8888886665 9999999999999999988763 2233333 799999999764 467899999999
Q ss_pred cEEEEEe-CCeeeEEeeCCCCHHHHHHHHHHH
Q 019115 129 PTLYLFV-AGVRQFQFFGERTRDVISAWVREK 159 (346)
Q Consensus 129 Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~ 159 (346)
|++++|+ +|++.....|.++.+.+.+++++.
T Consensus 536 P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 536 PTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 9999999 887777799999999999999875
No 117
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.16 E-value=2.6e-10 Score=88.81 Aligned_cols=99 Identities=17% Similarity=0.156 Sum_probs=76.3
Q ss_pred cEEcChhcHHHHHcCCCcEEEEEe-cCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcc--------------------
Q 019115 58 VVSLNGKNFSEFMGKNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------------------- 115 (346)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~~v~F~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------------------- 115 (346)
+.+++++.+...-.++++++|.|| +.||+.|....|.+.++++++++ ++.++.|..+.
T Consensus 8 l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D 87 (140)
T cd03017 8 LPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSD 87 (140)
T ss_pred ccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEEC
Confidence 334444444433335899999999 58999999999999999998875 68888876542
Q ss_pred -cHhHHHHCCCCCC---------cEEEEEe-CCeeeEEeeCCCCHHHHHHHH
Q 019115 116 -EKDLAKEYNILAY---------PTLYLFV-AGVRQFQFFGERTRDVISAWV 156 (346)
Q Consensus 116 -~~~~~~~~~i~~~---------Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i 156 (346)
+..+++.||+... |++++++ +|++...+.|....+.+.+-+
T Consensus 88 ~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 88 PDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred CccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 3467788999988 8999998 899999999988777665543
No 118
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.15 E-value=4.6e-10 Score=89.95 Aligned_cols=108 Identities=11% Similarity=0.098 Sum_probs=77.0
Q ss_pred CCCCCCCCCcCCCcEEcChhcHHHHHcCCCcEEEEEecCC-ChhHhhhhHHHHHHHHHccCCcEEEEEeCcc--------
Q 019115 45 NNNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANW-CYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-------- 115 (346)
Q Consensus 45 ~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~v~F~a~w-C~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~-------- 115 (346)
..|...|.+ .+.+.+++.+...-.++++++|+||++| |++|..++|.+.+++++++ ++.++.|+++.
T Consensus 19 ~~G~~~P~f---~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~ 94 (167)
T PRK00522 19 QVGDKAPDF---TLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFC 94 (167)
T ss_pred CCCCCCCCe---EEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHH
Confidence 345556655 3444555544432236889999999999 9999999999999999985 78888887642
Q ss_pred ---------------cHhHHHHCCCCCCc---------EEEEEe-CCeeeEEeeCC-----CCHHHHHHHH
Q 019115 116 ---------------EKDLAKEYNILAYP---------TLYLFV-AGVRQFQFFGE-----RTRDVISAWV 156 (346)
Q Consensus 116 ---------------~~~~~~~~~i~~~P---------t~~~~~-~g~~~~~~~g~-----~~~~~l~~~i 156 (346)
...+++.||+...| +.++++ +|++...+.+. ...+++.+.+
T Consensus 95 ~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l 165 (167)
T PRK00522 95 GAEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAAL 165 (167)
T ss_pred HhCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHh
Confidence 23678899998777 888887 88777766432 3455555554
No 119
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.3e-09 Score=80.58 Aligned_cols=92 Identities=15% Similarity=0.308 Sum_probs=75.0
Q ss_pred HHcCCCcEEEEEecCCChhHhhhhHHH---HHHHHHccCCcEEEEEeCcc----------------cHhHHHHCCCCCCc
Q 019115 69 FMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYL----------------EKDLAKEYNILAYP 129 (346)
Q Consensus 69 ~~~~~~~~~v~F~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~~----------------~~~~~~~~~i~~~P 129 (346)
+..+++..+++|-++.|++|.++...+ .++.+-+.+++.++.+++.. ..+++++|+++++|
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstP 117 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTP 117 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCc
Confidence 335789999999999999999998766 44555556578888887642 35899999999999
Q ss_pred EEEEEe-CCeeeEEeeCCCCHHHHHHHHHHHc
Q 019115 130 TLYLFV-AGVRQFQFFGERTRDVISAWVREKM 160 (346)
Q Consensus 130 t~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (346)
|+++|+ +|+.+....|.+.++++..-++=..
T Consensus 118 tfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa 149 (182)
T COG2143 118 TFVFFDKTGKTILELPGYMPPEQFLAVLKYVA 149 (182)
T ss_pred eEEEEcCCCCEEEecCCCCCHHHHHHHHHHHH
Confidence 999999 8888999999999999877665333
No 120
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.13 E-value=1.4e-10 Score=88.26 Aligned_cols=69 Identities=25% Similarity=0.516 Sum_probs=60.1
Q ss_pred CCCcEEEEEecC-CChhHhhhhHHHHHHHHHccC-CcEEEEEeCcc---------------------cHhHHHHCCCC--
Q 019115 72 KNRNVMVMFYAN-WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------EKDLAKEYNIL-- 126 (346)
Q Consensus 72 ~~~~~~v~F~a~-wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~---------------------~~~~~~~~~i~-- 126 (346)
.+++++|.||++ ||++|+...+.+.++.++++. ++.++.|..+. +.++++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 779999999999 999999999999999999987 79999888753 34678899999
Q ss_pred ----CCcEEEEEe-CCeee
Q 019115 127 ----AYPTLYLFV-AGVRQ 140 (346)
Q Consensus 127 ----~~Pt~~~~~-~g~~~ 140 (346)
.+|++++++ +|++.
T Consensus 104 ~~~~~~p~~~lid~~g~I~ 122 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIR 122 (124)
T ss_dssp TTSEESEEEEEEETTSBEE
T ss_pred cCCceEeEEEEECCCCEEE
Confidence 999999998 67544
No 121
>smart00594 UAS UAS domain.
Probab=99.13 E-value=8.7e-10 Score=83.40 Aligned_cols=89 Identities=11% Similarity=0.090 Sum_probs=70.6
Q ss_pred HHHcCCCcEEEEEecCCChhHhhhhHHH---HHHHHHccCCcEEEEEeCc--ccHhHHHHCCCCCCcEEEEEe-CC----
Q 019115 68 EFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAY--LEKDLAKEYNILAYPTLYLFV-AG---- 137 (346)
Q Consensus 68 ~~~~~~~~~~v~F~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~--~~~~~~~~~~i~~~Pt~~~~~-~g---- 137 (346)
....++|+++|+|+++||++|+.+.... .++.+.++.++.+..+|.+ +..+++++|+++++|++.+++ +|
T Consensus 22 ~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~ 101 (122)
T smart00594 22 EASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRV 101 (122)
T ss_pred HHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCcee
Confidence 3446789999999999999999988653 3445555557888888875 345799999999999999997 44
Q ss_pred -eeeEEeeCCCCHHHHHHHH
Q 019115 138 -VRQFQFFGERTRDVISAWV 156 (346)
Q Consensus 138 -~~~~~~~g~~~~~~l~~~i 156 (346)
+.+.+..|..+++++..++
T Consensus 102 ~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 102 IEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEEeccccCCCCHHHHHHhh
Confidence 2467788999999998775
No 122
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=2.5e-10 Score=90.59 Aligned_cols=88 Identities=20% Similarity=0.232 Sum_probs=76.5
Q ss_pred CcEEc-ChhcHHHHHcC--CCcEEEEEecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcccHhHHHHCCCC------
Q 019115 57 DVVSL-NGKNFSEFMGK--NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNIL------ 126 (346)
Q Consensus 57 ~v~~l-~~~~~~~~~~~--~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~------ 126 (346)
.+..+ +++.+++.+.. ...|+|.|+|.|.+.|+.+.|.+.+++.+|.. ...|++||+...++.+++|+|.
T Consensus 125 ~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~sr 204 (265)
T KOG0914|consen 125 TIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSR 204 (265)
T ss_pred heeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccc
Confidence 56677 66777766644 46899999999999999999999999999987 8999999999999999999875
Q ss_pred CCcEEEEEeCCeeeEEee
Q 019115 127 AYPTLYLFVAGVRQFQFF 144 (346)
Q Consensus 127 ~~Pt~~~~~~g~~~~~~~ 144 (346)
..||+++|.+|+++.+..
T Consensus 205 QLPT~ilFq~gkE~~RrP 222 (265)
T KOG0914|consen 205 QLPTYILFQKGKEVSRRP 222 (265)
T ss_pred cCCeEEEEccchhhhcCc
Confidence 589999999998777654
No 123
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.10 E-value=9.2e-10 Score=88.90 Aligned_cols=88 Identities=17% Similarity=0.302 Sum_probs=69.4
Q ss_pred CCCcEEEEEe-cCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcc----------------------------cHhHHH
Q 019115 72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAK 121 (346)
Q Consensus 72 ~~~~~~v~F~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~ 121 (346)
++++++|.|| ++||++|....|.+.++++++.+ ++.++.|.++. ...+++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 5789999999 89999999999999999999976 68888776643 224567
Q ss_pred HCCCC------CCcEEEEEe-CCeeeEEeeC----CCCHHHHHHHHHHH
Q 019115 122 EYNIL------AYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVREK 159 (346)
Q Consensus 122 ~~~i~------~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~~ 159 (346)
+||+. ..|++++++ +|++...+.+ .++.+++.+.|+..
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 78886 578999998 8988777744 34667777777654
No 124
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.09 E-value=2.9e-10 Score=79.64 Aligned_cols=69 Identities=30% Similarity=0.391 Sum_probs=53.2
Q ss_pred HHHHHcCCCcEEEEEecCCChhHhhhhHHH---HHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEe
Q 019115 66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (346)
Q Consensus 66 ~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~ 135 (346)
+.+...++|+++|+|+++||++|+.+...+ .++.+.+.+++..+.||.++........+ .++|++++++
T Consensus 10 l~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 10 LAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred HHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence 444557899999999999999999999877 44555455589999999987655443222 7799999986
No 125
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.08 E-value=1.5e-09 Score=85.91 Aligned_cols=103 Identities=15% Similarity=0.141 Sum_probs=75.6
Q ss_pred CCCCCCCcCCCcEEcChhcHHHHHcCCCcEEEEEecC-CChhHhhhhHHHHHHHHHccC-CcEEEEEeCcc---------
Q 019115 47 NHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYAN-WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL--------- 115 (346)
Q Consensus 47 ~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~v~F~a~-wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~--------- 115 (346)
|...|.+ .+.+++++.+...-.++++++|.||++ ||+.|....+.+.++++++++ ++.++.|+.+.
T Consensus 7 g~~~p~f---~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~ 83 (154)
T PRK09437 7 GDIAPKF---SLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAE 83 (154)
T ss_pred CCcCCCc---EeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHH
Confidence 3344444 455566665554334788999999986 688899999999999999876 78888887643
Q ss_pred ------------cHhHHHHCCCCCC------------cEEEEEe-CCeeeEEeeCCCCHHHH
Q 019115 116 ------------EKDLAKEYNILAY------------PTLYLFV-AGVRQFQFFGERTRDVI 152 (346)
Q Consensus 116 ------------~~~~~~~~~i~~~------------Pt~~~~~-~g~~~~~~~g~~~~~~l 152 (346)
...++++||+... |+.++++ +|++...|.|....+.+
T Consensus 84 ~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~ 145 (154)
T PRK09437 84 KELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHH 145 (154)
T ss_pred HhCCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcchhH
Confidence 3456788888654 6778887 99888899887655543
No 126
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.05 E-value=1.4e-09 Score=85.05 Aligned_cols=89 Identities=12% Similarity=0.138 Sum_probs=66.7
Q ss_pred CcEEcChhcHHHHHcCCCcEEEEEecCC-ChhHhhhhHHHHHHHHHccCCcEEEEEeCcc--------------------
Q 019115 57 DVVSLNGKNFSEFMGKNRNVMVMFYANW-CYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-------------------- 115 (346)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~~v~F~a~w-C~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~-------------------- 115 (346)
.+.+.+++.+...-..+++++|+||++| |++|+.++|.+.+++++++ ++.++.|+.+.
T Consensus 10 ~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~ 88 (143)
T cd03014 10 TLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDNVTTLS 88 (143)
T ss_pred EEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCCceEee
Confidence 3444444444422236789999999998 6999999999999999986 78888887742
Q ss_pred --c-HhHHHHCCCCC------CcEEEEEe-CCeeeEEeeCC
Q 019115 116 --E-KDLAKEYNILA------YPTLYLFV-AGVRQFQFFGE 146 (346)
Q Consensus 116 --~-~~~~~~~~i~~------~Pt~~~~~-~g~~~~~~~g~ 146 (346)
. ..+++.||+.. .|+.++++ +|++...+.|.
T Consensus 89 D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~~ 129 (143)
T cd03014 89 DFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVELVP 129 (143)
T ss_pred cCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEECC
Confidence 1 45677888764 68999998 89887777654
No 127
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.04 E-value=2.6e-09 Score=87.18 Aligned_cols=87 Identities=17% Similarity=0.230 Sum_probs=68.0
Q ss_pred CCCcEEEEEe-cCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcc-------------------------cHhHHHHCC
Q 019115 72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------------------------EKDLAKEYN 124 (346)
Q Consensus 72 ~~~~~~v~F~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------------------------~~~~~~~~~ 124 (346)
++++++|.|| ++||++|..+.|.+.++.+++++ ++.++.|+++. +..+++.||
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 6789999999 99999999999999999999865 77777777653 235778899
Q ss_pred CC------CCcEEEEEe-CCeeeEEeeC----CCCHHHHHHHHHH
Q 019115 125 IL------AYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVRE 158 (346)
Q Consensus 125 i~------~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~ 158 (346)
+. ..|+.++++ +|++...+.+ .++.+++.+.|+.
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 86 469999997 8977666532 2467777776643
No 128
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=99.01 E-value=4.7e-09 Score=77.12 Aligned_cols=97 Identities=13% Similarity=0.218 Sum_probs=82.4
Q ss_pred CceeccChhHHHHhhccC-CeEEEEEecCCCCccHHHHHHHh-ccCCceeEEEecCHHHHhhcCCCCCCCCCeEEEEe--
Q 019115 163 GTYSITTTDEAERILTVE-SKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLH-- 238 (346)
Q Consensus 163 ~~~~i~s~~~~~~~~~~~-~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~~~~~~~v~~~~~~p~i~~~~-- 238 (346)
++.++.+.++++.++... +..+|+||....+.....|.++| .+++++.|+.+.+..+.+.+++. .|.+++|+
T Consensus 1 ~v~~i~s~~ele~f~~~~~~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t~~~~~~~~~~~~----~~~vvl~rp~ 76 (107)
T cd03068 1 PSKQLQTLKQVQEFLRDGDDVIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHTFDSEIFKSLKVS----PGQLVVFQPE 76 (107)
T ss_pred CceEcCCHHHHHHHHhcCCCEEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEEChHHHHHhcCCC----CCceEEECcH
Confidence 457788999999999877 99999999987778899999988 67799999999999999999987 48899994
Q ss_pred ----cCCCccccCCCC-CCHHH-HHHHHhcc
Q 019115 239 ----LEAGKATPFRHQ-FTRLA-IANFVTHT 263 (346)
Q Consensus 239 ----~~~~~~~~y~g~-~~~~~-l~~fi~~~ 263 (346)
..++....|+|. .+.++ |..||+.|
T Consensus 77 ~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 77 KFQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred HHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 445678889988 77755 99999865
No 129
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.99 E-value=4.7e-09 Score=82.67 Aligned_cols=90 Identities=11% Similarity=0.281 Sum_probs=66.1
Q ss_pred cEEcChhcHHHHHcCC-CcEEEEEe-cCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCc--------------------
Q 019115 58 VVSLNGKNFSEFMGKN-RNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY-------------------- 114 (346)
Q Consensus 58 v~~l~~~~~~~~~~~~-~~~~v~F~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~-------------------- 114 (346)
+.+.+++.+...-.++ ++++|.|| ++||+.|....|.+.++++++++ ++.++.|+.+
T Consensus 12 l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~ 91 (149)
T cd03018 12 LPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLS 91 (149)
T ss_pred ecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEec
Confidence 3334455444322244 88888888 99999999999999999999975 7888887653
Q ss_pred -cc--HhHHHHCCCCC----C--cEEEEEe-CCeeeEEeeCCC
Q 019115 115 -LE--KDLAKEYNILA----Y--PTLYLFV-AGVRQFQFFGER 147 (346)
Q Consensus 115 -~~--~~~~~~~~i~~----~--Pt~~~~~-~g~~~~~~~g~~ 147 (346)
.+ ..+++.||+.. . |++++++ +|++...+.|..
T Consensus 92 D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 92 DFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred CCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEecCC
Confidence 23 56778888873 3 3788887 898888887754
No 130
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.96 E-value=3.5e-09 Score=79.49 Aligned_cols=82 Identities=28% Similarity=0.489 Sum_probs=68.7
Q ss_pred CCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCc-ccHhHHHHCC--CCCCcEEEEEeCCeeeEEeeC--CC
Q 019115 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY-LEKDLAKEYN--ILAYPTLYLFVAGVRQFQFFG--ER 147 (346)
Q Consensus 73 ~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~-~~~~~~~~~~--i~~~Pt~~~~~~g~~~~~~~g--~~ 147 (346)
++++++.||++||++|+.+.|.+.++++++...+.+..+|.. ..+++...|+ +..+|++.++.+|.......| ..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 111 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVL 111 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccC
Confidence 789999999999999999999999999998877999999997 7899999999 999999998888865444445 34
Q ss_pred CHHHHHH
Q 019115 148 TRDVISA 154 (346)
Q Consensus 148 ~~~~l~~ 154 (346)
....+..
T Consensus 112 ~~~~~~~ 118 (127)
T COG0526 112 PKEALID 118 (127)
T ss_pred CHHHHHH
Confidence 4444443
No 131
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.95 E-value=6.3e-09 Score=81.88 Aligned_cols=57 Identities=16% Similarity=0.188 Sum_probs=40.3
Q ss_pred EEcChhcHHH-HHcCCCcEEEEE-ecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcc
Q 019115 59 VSLNGKNFSE-FMGKNRNVMVMF-YANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL 115 (346)
Q Consensus 59 ~~l~~~~~~~-~~~~~~~~~v~F-~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~ 115 (346)
.+++++.+.. ....+++++|.| |++||++|+.+.|.+.++++++++ ++.++.|+.+.
T Consensus 8 ~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~ 67 (149)
T cd02970 8 PDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPES 67 (149)
T ss_pred cCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCC
Confidence 3344444432 223345555555 699999999999999999999865 78899888754
No 132
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.93 E-value=1.5e-08 Score=74.67 Aligned_cols=95 Identities=12% Similarity=0.183 Sum_probs=72.8
Q ss_pred eccChhHHHHhhccCCeEEEEEec--CCCCccHHHHHHHh-cc---CCceeEEEec--------CHHHHhhcCCCCCCCC
Q 019115 166 SITTTDEAERILTVESKLVLGFLH--DLEGMESEELAAAS-KL---HSDVNFYQTT--------SADVAEFFHIHPKSKR 231 (346)
Q Consensus 166 ~i~s~~~~~~~~~~~~~~~v~f~~--~~~~~~~~~~~~~a-~~---~~~~~f~~~~--------~~~~~~~~~v~~~~~~ 231 (346)
.+ +.+++++.+.+++.++|.||. +||+. .+.+..+| ++ ...+.++.+. +.+++++|+|+. .++
T Consensus 5 ~L-~~~nF~~~v~~~~~vlV~F~A~~Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~-~gy 81 (116)
T cd03007 5 DL-DTVTFYKVIPKFKYSLVKFDTAYPYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDK-ESY 81 (116)
T ss_pred EC-ChhhHHHHHhcCCcEEEEEeCCCCCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCc-CCC
Confidence 44 557889999999999999999 99995 24455544 22 3346676542 478999999971 149
Q ss_pred CeEEEEecCC-CccccCCCC-CCHHHHHHHHhcc
Q 019115 232 PALIFLHLEA-GKATPFRHQ-FTRLAIANFVTHT 263 (346)
Q Consensus 232 p~i~~~~~~~-~~~~~y~g~-~~~~~l~~fi~~~ 263 (346)
|+|.+|+.++ ..+..|+|. ++.++|..||+++
T Consensus 82 PTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 82 PVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 9999999873 356899996 9999999999876
No 133
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.92 E-value=3.1e-09 Score=81.23 Aligned_cols=70 Identities=21% Similarity=0.414 Sum_probs=58.4
Q ss_pred cCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCC---cEEEEEeCccc-------------------------HhHHHH
Q 019115 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGE---ADLVMVDAYLE-------------------------KDLAKE 122 (346)
Q Consensus 71 ~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~---v~~~~v~~~~~-------------------------~~~~~~ 122 (346)
..||.+.++|-|.||++|+.+.|.+.+++++.++. +.++-|+-|.+ .+++++
T Consensus 31 l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~k 110 (157)
T KOG2501|consen 31 LQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEK 110 (157)
T ss_pred hCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHh
Confidence 36799999999999999999999999999998774 66666665432 368899
Q ss_pred CCCCCCcEEEEEe-CCeee
Q 019115 123 YNILAYPTLYLFV-AGVRQ 140 (346)
Q Consensus 123 ~~i~~~Pt~~~~~-~g~~~ 140 (346)
|+|.++|++++.. +|..+
T Consensus 111 y~v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 111 YEVKGIPALVILKPDGTVV 129 (157)
T ss_pred cccCcCceeEEecCCCCEe
Confidence 9999999999998 78543
No 134
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.92 E-value=1.4e-08 Score=83.81 Aligned_cols=89 Identities=18% Similarity=0.223 Sum_probs=68.7
Q ss_pred CCCcEEE-EEecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcc---------------------------cHhHHHH
Q 019115 72 KNRNVMV-MFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------------EKDLAKE 122 (346)
Q Consensus 72 ~~~~~~v-~F~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~---------------------------~~~~~~~ 122 (346)
+++.+++ .||++||+.|..+.+.+.++++++++ ++.++.|+++. +..+++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 5665555 68999999999999999999999876 67788776652 2457788
Q ss_pred CCCC------CCcEEEEEe-CCeeeEEe----eCCCCHHHHHHHHHHHc
Q 019115 123 YNIL------AYPTLYLFV-AGVRQFQF----FGERTRDVISAWVREKM 160 (346)
Q Consensus 123 ~~i~------~~Pt~~~~~-~g~~~~~~----~g~~~~~~l~~~i~~~~ 160 (346)
||+. .+|++++++ +|++.... .+.++.+++.+.++...
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 8884 589999998 88665443 35678899988887653
No 135
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.91 E-value=1.6e-08 Score=82.11 Aligned_cols=88 Identities=14% Similarity=0.172 Sum_probs=69.6
Q ss_pred CCCcEEEEEe-cCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcc-------------------------cHhHHHHCC
Q 019115 72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------------------------EKDLAKEYN 124 (346)
Q Consensus 72 ~~~~~~v~F~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------------------------~~~~~~~~~ 124 (346)
.++++++.|| ++||+.|..+.+.+.++++++++ ++.++.|+.+. +..+++.||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 6789999999 99999999999999999999975 77787777542 346788999
Q ss_pred C----CCC--cEEEEEe-CCeeeEEee----CCCCHHHHHHHHHHH
Q 019115 125 I----LAY--PTLYLFV-AGVRQFQFF----GERTRDVISAWVREK 159 (346)
Q Consensus 125 i----~~~--Pt~~~~~-~g~~~~~~~----g~~~~~~l~~~i~~~ 159 (346)
+ .+. |+.++++ +|++...+. ..++.+++.+.+...
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 8 356 9999998 887665543 236788888777543
No 136
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.90 E-value=1.9e-09 Score=79.78 Aligned_cols=76 Identities=17% Similarity=0.119 Sum_probs=66.1
Q ss_pred eEeecccchhhhccCCCcEEEEEeeCCCchHHHHHHHHHHHH---hcCceEEEEEECCCcccccchhhhcCCCCCCCccc
Q 019115 268 VVTLTIHNAQFVFQDPRKQLWLFAPAYGSDKVILTFEEVAKA---LKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVS 344 (346)
Q Consensus 268 ~~~lt~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~a~~---~~~~~~f~~vd~~~~~~~~~~~~~~gi~~~~~P~~ 344 (346)
|+++|+++...++.++.|..++|...++.+.....++.+|++ +++++.|+++|.+++. ..++.||+++++.|++
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~---~~~~~fgl~~~~~P~i 77 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHDKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFR---HPLLHLGKTPADLPVI 77 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEecchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhh---hHHHHcCCCHhHCCEE
Confidence 468999999999999997665555555578999999999999 9999999999999865 5899999999899998
Q ss_pred cC
Q 019115 345 SL 346 (346)
Q Consensus 345 ~i 346 (346)
+|
T Consensus 78 ~i 79 (111)
T cd03072 78 AI 79 (111)
T ss_pred EE
Confidence 75
No 137
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.89 E-value=1.7e-08 Score=81.45 Aligned_cols=134 Identities=10% Similarity=0.057 Sum_probs=86.8
Q ss_pred CcEEcChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcc--------c---HhHHH-HC
Q 019115 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL--------E---KDLAK-EY 123 (346)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~--------~---~~~~~-~~ 123 (346)
.+.+++++.+...-.++|+++|.|||+||++|+ ..|.+++++++|++ ++.++.+.|++ . .++|+ ++
T Consensus 9 ~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~ 87 (183)
T PRK10606 9 VVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTW 87 (183)
T ss_pred EeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHcc
Confidence 445566665554445789999999999999997 58999999999987 79999999852 1 34555 57
Q ss_pred CCCCCcEEEEEe-CCeeeEEeeCCCCHHHHHHHHHHHcCCCcee----------------c--cC-hhHHHHhhccCCeE
Q 019115 124 NILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMTLGTYS----------------I--TT-TDEAERILTVESKL 183 (346)
Q Consensus 124 ~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~----------------i--~s-~~~~~~~~~~~~~~ 183 (346)
++. +|.+-=++ +|. ....+.+|+.+..+.+... + .+ .=++.+|+-+.+-.
T Consensus 88 g~~-Fpv~~k~dvnG~---------~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~ 157 (183)
T PRK10606 88 GVT-FPMFSKIEVNGE---------GRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQ 157 (183)
T ss_pred CCC-ceeEEEEccCCC---------CCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCc
Confidence 764 66443343 442 2345677777655321100 0 00 11455777777777
Q ss_pred EEEEecCCCCccHHHHHH
Q 019115 184 VLGFLHDLEGMESEELAA 201 (346)
Q Consensus 184 ~v~f~~~~~~~~~~~~~~ 201 (346)
+|..|.+...+..+.+..
T Consensus 158 vv~r~~~~~~p~~~~i~~ 175 (183)
T PRK10606 158 VIQRFSPDMTPEDPIVME 175 (183)
T ss_pred EEEEECCCCCCCHHHHHH
Confidence 788888877776544433
No 138
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.86 E-value=1.7e-08 Score=69.02 Aligned_cols=68 Identities=12% Similarity=0.206 Sum_probs=53.4
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHh----HHHHCCCCCCcEEEEEeCCeeeEEeeCCCCHHHH
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD----LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVI 152 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~----~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l 152 (346)
+..|+++||++|++..+.+++ .++.+..+|++++++ +.+.+++.++|++++ +|+. ..| .+.+.|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~--~~~~---~~g-~~~~~i 69 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVI--GHKI---IVG-FDPEKL 69 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEE--CCEE---Eee-CCHHHH
Confidence 467999999999999888865 268888999987654 566799999999987 3643 555 477888
Q ss_pred HHHH
Q 019115 153 SAWV 156 (346)
Q Consensus 153 ~~~i 156 (346)
.+++
T Consensus 70 ~~~i 73 (74)
T TIGR02196 70 DQLL 73 (74)
T ss_pred HHHh
Confidence 8876
No 139
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.85 E-value=1.6e-08 Score=78.62 Aligned_cols=89 Identities=17% Similarity=0.205 Sum_probs=66.8
Q ss_pred EcChhcHHHHHcCCCcEEEEEe-cCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcc----------------------
Q 019115 60 SLNGKNFSEFMGKNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------- 115 (346)
Q Consensus 60 ~l~~~~~~~~~~~~~~~~v~F~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~---------------------- 115 (346)
+++++.+...-..+++++|.|| +.||++|....|.+.+++++++. ++.++.|..+.
T Consensus 9 ~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~ 88 (140)
T cd02971 9 ATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDP 88 (140)
T ss_pred cCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECC
Confidence 3444433322227899999999 78999999999999999999854 78888887642
Q ss_pred cHhHHHHCCCCCCc---------EEEEEe-CCeeeEEeeCCCC
Q 019115 116 EKDLAKEYNILAYP---------TLYLFV-AGVRQFQFFGERT 148 (346)
Q Consensus 116 ~~~~~~~~~i~~~P---------t~~~~~-~g~~~~~~~g~~~ 148 (346)
+..+.+.||+...| ++++++ +|++...+.|...
T Consensus 89 ~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 89 DGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred ChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 23567788887665 788887 7888888887654
No 140
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.84 E-value=1e-08 Score=79.97 Aligned_cols=57 Identities=19% Similarity=0.230 Sum_probs=44.0
Q ss_pred cEEcChhcHHHHHcCCCcEEEEEecCCChh-HhhhhHHHHHHHHHccC----CcEEEEEeCc
Q 019115 58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYW-SKKLAPEFAAAAKMLKG----EADLVMVDAY 114 (346)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~~v~F~a~wC~~-C~~~~p~~~~~~~~~~~----~v~~~~v~~~ 114 (346)
+.+.+++.++..-.++++++|.||++||++ |....+.+.++++++++ ++.++.|+.+
T Consensus 7 l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 7 LTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred EEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 334445444422236899999999999998 99999999999999875 3888888764
No 141
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.83 E-value=3.9e-08 Score=72.26 Aligned_cols=94 Identities=15% Similarity=0.198 Sum_probs=73.5
Q ss_pred CceeccChhHHHHhh-ccCCeEEEEEecCCCCc---cHHHHHHHh-ccCCceeEEEe---cCHHHHhhcCCCCCCCCCeE
Q 019115 163 GTYSITTTDEAERIL-TVESKLVLGFLHDLEGM---ESEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPAL 234 (346)
Q Consensus 163 ~~~~i~s~~~~~~~~-~~~~~~~v~f~~~~~~~---~~~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~v~~~~~~p~i 234 (346)
.+.++ +.+++++.+ +...+++|.||.+||.+ ..+.+.+++ ++.+.+.|+.+ .+.++++.++++ ++|++
T Consensus 2 ~v~~l-~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~---~~Pt~ 77 (104)
T cd03004 2 SVITL-TPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIR---AYPTI 77 (104)
T ss_pred cceEc-CHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCC---cccEE
Confidence 34556 456777765 45668999999999988 556677776 55667777764 567899999998 59999
Q ss_pred EEEecCCCccccCCCCCC-HHHHHHHH
Q 019115 235 IFLHLEAGKATPFRHQFT-RLAIANFV 260 (346)
Q Consensus 235 ~~~~~~~~~~~~y~g~~~-~~~l~~fi 260 (346)
++|+.+++....|.|..+ .++|.+||
T Consensus 78 ~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 78 RLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 999988667889999887 99999986
No 142
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.83 E-value=5.6e-08 Score=70.99 Aligned_cols=93 Identities=4% Similarity=0.070 Sum_probs=73.8
Q ss_pred CceeccChhHHHHhhccCCeEEEEEecCCCCc---cHHHHHHHh-ccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEE
Q 019115 163 GTYSITTTDEAERILTVESKLVLGFLHDLEGM---ESEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALI 235 (346)
Q Consensus 163 ~~~~i~s~~~~~~~~~~~~~~~v~f~~~~~~~---~~~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~v~~~~~~p~i~ 235 (346)
.+..+ +.++++..+.+...++|.|+.+||++ ..+.+.+++ .+.+.+.|+.+ .++++++.++++ ++|+++
T Consensus 2 ~~~~l-~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~---~~Pt~~ 77 (101)
T cd03003 2 EIVTL-DRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVN---SYPSLY 77 (101)
T ss_pred CeEEc-CHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCC---ccCEEE
Confidence 34556 45678888877889999999999988 556677777 56667777754 567899999998 599999
Q ss_pred EEecCCCccccCCCCCCHHHHHHHH
Q 019115 236 FLHLEAGKATPFRHQFTRLAIANFV 260 (346)
Q Consensus 236 ~~~~~~~~~~~y~g~~~~~~l~~fi 260 (346)
+|+.+. ....|.|..+.++|.+|.
T Consensus 78 ~~~~g~-~~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 78 VFPSGM-NPEKYYGDRSKESLVKFA 101 (101)
T ss_pred EEcCCC-CcccCCCCCCHHHHHhhC
Confidence 998764 577899999999998874
No 143
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.81 E-value=2.6e-08 Score=72.92 Aligned_cols=91 Identities=12% Similarity=0.253 Sum_probs=74.0
Q ss_pred ChhHHHHhhcc-CCeEEEEEecCCCCc---cHHHHHHHh-ccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEecC
Q 019115 169 TTDEAERILTV-ESKLVLGFLHDLEGM---ESEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLE 240 (346)
Q Consensus 169 s~~~~~~~~~~-~~~~~v~f~~~~~~~---~~~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~v~~~~~~p~i~~~~~~ 240 (346)
+.+++++.+.+ ++.++|.|+.+||++ ..+.+.+++ .+.+++.|+.+ .+.++++.+++. ++|++++|+.+
T Consensus 5 t~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~---~~Pt~~~~~~g 81 (103)
T PF00085_consen 5 TDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVK---SVPTIIFFKNG 81 (103)
T ss_dssp STTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCS---SSSEEEEEETT
T ss_pred CHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCC---CCCEEEEEECC
Confidence 55777777776 899999999999988 555666666 45558888875 567899999998 59999999987
Q ss_pred CCccccCCCCCCHHHHHHHHhcc
Q 019115 241 AGKATPFRHQFTRLAIANFVTHT 263 (346)
Q Consensus 241 ~~~~~~y~g~~~~~~l~~fi~~~ 263 (346)
. ....|.|..+.++|.+||++|
T Consensus 82 ~-~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 82 K-EVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp E-EEEEEESSSSHHHHHHHHHHH
T ss_pred c-EEEEEECCCCHHHHHHHHHcC
Confidence 5 445899999999999999875
No 144
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.79 E-value=5.7e-08 Score=71.98 Aligned_cols=94 Identities=11% Similarity=0.109 Sum_probs=72.6
Q ss_pred CCceeccChhHHHHh---hccCCeEEEEEecCCCCc---cHHHHHHHh-ccCCceeEEEe---cCHHHH-hhcCCCCCCC
Q 019115 162 LGTYSITTTDEAERI---LTVESKLVLGFLHDLEGM---ESEELAAAS-KLHSDVNFYQT---TSADVA-EFFHIHPKSK 230 (346)
Q Consensus 162 ~~~~~i~s~~~~~~~---~~~~~~~~v~f~~~~~~~---~~~~~~~~a-~~~~~~~f~~~---~~~~~~-~~~~v~~~~~ 230 (346)
+.+.++++ +++.+. +.++..++|.||.+||++ ..+.+.++| .+.+.+.|+.+ .+.+++ ++|++. +
T Consensus 9 ~~v~~l~~-~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~---~ 84 (113)
T cd03006 9 SPVLDFYK-GQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFF---Y 84 (113)
T ss_pred CCeEEech-hhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCc---c
Confidence 44566643 455554 678899999999999998 556677877 56667777765 456788 589998 5
Q ss_pred CCeEEEEecCCCccccCCCCCCHHHHHHHH
Q 019115 231 RPALIFLHLEAGKATPFRHQFTRLAIANFV 260 (346)
Q Consensus 231 ~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi 260 (346)
+|++++|+++. ....|.|..+.+.|..|+
T Consensus 85 ~PTl~lf~~g~-~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 85 FPVIHLYYRSR-GPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred cCEEEEEECCc-cceEEeCCCCHHHHHhhC
Confidence 99999998764 578899999999999874
No 145
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.77 E-value=9.5e-08 Score=79.08 Aligned_cols=85 Identities=14% Similarity=0.163 Sum_probs=64.9
Q ss_pred cEEEEEecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcc---------------------------cHhHHHHCCCC
Q 019115 75 NVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------------EKDLAKEYNIL 126 (346)
Q Consensus 75 ~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~---------------------------~~~~~~~~~i~ 126 (346)
.+++.||++||+.|..+.+.+.++++++++ ++.++.|+++. +..+++.||+.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 456689999999999999999999999976 78888887763 23577888876
Q ss_pred ----C----CcEEEEEe-CCeeeEEeeC----CCCHHHHHHHHHHH
Q 019115 127 ----A----YPTLYLFV-AGVRQFQFFG----ERTRDVISAWVREK 159 (346)
Q Consensus 127 ----~----~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~~ 159 (346)
+ .|+.++++ +|++...+.+ .++.+++.+.++.+
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 2 35688887 8877666544 45677787777654
No 146
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.77 E-value=3.8e-08 Score=65.07 Aligned_cols=60 Identities=33% Similarity=0.634 Sum_probs=52.3
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHH---HCCCCCCcEEEEEeCC
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAK---EYNILAYPTLYLFVAG 137 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~---~~~i~~~Pt~~~~~~g 137 (346)
++.||++||++|++..+.+.++ +....++.+..++++....... .+++.++|+++++++|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 4444589999999998877665 8899999999999876
No 147
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.77 E-value=1.1e-07 Score=70.37 Aligned_cols=93 Identities=22% Similarity=0.307 Sum_probs=72.1
Q ss_pred ceeccChhHHHHhhccCCeEEEEEecCCCCc---cHHHHHHHhc-cC------CceeEEEe---cCHHHHhhcCCCCCCC
Q 019115 164 TYSITTTDEAERILTVESKLVLGFLHDLEGM---ESEELAAASK-LH------SDVNFYQT---TSADVAEFFHIHPKSK 230 (346)
Q Consensus 164 ~~~i~s~~~~~~~~~~~~~~~v~f~~~~~~~---~~~~~~~~a~-~~------~~~~f~~~---~~~~~~~~~~v~~~~~ 230 (346)
+.++ +.+++++.+..++.++|.|+.+||.. ..+.+.++++ +. +.+.|+.+ .+.++++.|+++ +
T Consensus 3 v~~l-~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~---~ 78 (108)
T cd02996 3 IVSL-TSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRIN---K 78 (108)
T ss_pred eEEc-CHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCC---c
Confidence 4556 45678888888888999999999987 4455666552 21 24667654 577999999998 5
Q ss_pred CCeEEEEecCCCccccCCCCCCHHHHHHHH
Q 019115 231 RPALIFLHLEAGKATPFRHQFTRLAIANFV 260 (346)
Q Consensus 231 ~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi 260 (346)
+|++++|+.+......|.|..+.++|.+||
T Consensus 79 ~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 79 YPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 999999998764568899999999999986
No 148
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.76 E-value=9.5e-08 Score=79.30 Aligned_cols=83 Identities=17% Similarity=0.194 Sum_probs=68.8
Q ss_pred CCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCc-----------ccHhHHHHCCCCCCcEEEEEe-CC-e
Q 019115 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY-----------LEKDLAKEYNILAYPTLYLFV-AG-V 138 (346)
Q Consensus 72 ~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~-----------~~~~~~~~~~i~~~Pt~~~~~-~g-~ 138 (346)
.++.-|+.||.+.|++|+++.|.+..+++++ ++.+..|++| .+..+++++||..+|++++++ ++ +
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y--g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY--GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK 196 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh--CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence 4678899999999999999999999999999 4777777776 357899999999999999998 44 3
Q ss_pred eeEEeeCCCCHHHHHHHH
Q 019115 139 RQFQFFGERTRDVISAWV 156 (346)
Q Consensus 139 ~~~~~~g~~~~~~l~~~i 156 (346)
....-.|..+.++|.+-|
T Consensus 197 ~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 197 WYPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEEEeeecCCHHHHHHhh
Confidence 334445999999887654
No 149
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.75 E-value=8.2e-08 Score=80.46 Aligned_cols=146 Identities=16% Similarity=0.221 Sum_probs=107.4
Q ss_pred hhHHHHhhccCCeEEEEEecCCCCc---cHHHHHHHh-ccC-----CceeEEEe---cCHHHHhhcCCCCCCCCCeEEEE
Q 019115 170 TDEAERILTVESKLVLGFLHDLEGM---ESEELAAAS-KLH-----SDVNFYQT---TSADVAEFFHIHPKSKRPALIFL 237 (346)
Q Consensus 170 ~~~~~~~~~~~~~~~v~f~~~~~~~---~~~~~~~~a-~~~-----~~~~f~~~---~~~~~~~~~~v~~~~~~p~i~~~ 237 (346)
.++++..++....++|.||++||.- +.+.|.++| ++. +++.++.+ .+..++++|.|+ +|||+.+|
T Consensus 3 ~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~---KyPTlKvf 79 (375)
T KOG0912|consen 3 SENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHIN---KYPTLKVF 79 (375)
T ss_pred cccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccc---cCceeeee
Confidence 3567788889999999999999975 667777766 332 44556654 667899999999 69999999
Q ss_pred ecCCCccccCCCCCCHHHHHHHHhccCCCceEeecc-cchhhhccCCCcEEEEEeeCCCchHHHHHHHHHHHHhcCceEE
Q 019115 238 HLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTI-HNAQFVFQDPRKQLWLFAPAYGSDKVILTFEEVAKALKGKLLH 316 (346)
Q Consensus 238 ~~~~~~~~~y~g~~~~~~l~~fi~~~~~p~~~~lt~-~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~a~~~~~~~~f 316 (346)
+.|.--...|.|.++.+.|.+||++..--.+.++.. ..+..+....+..++.+.+..+...+ +.++++|.-+++...|
T Consensus 80 rnG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey-~~~~kva~~lr~dc~f 158 (375)
T KOG0912|consen 80 RNGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEY-DNLRKVASLLRDDCVF 158 (375)
T ss_pred eccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCchH-HHHHHHHHHHhhccEE
Confidence 998766678999999999999999866555666543 33334434345566666655554555 5788899999988666
Q ss_pred EEE
Q 019115 317 VYV 319 (346)
Q Consensus 317 ~~v 319 (346)
..-
T Consensus 159 ~V~ 161 (375)
T KOG0912|consen 159 LVG 161 (375)
T ss_pred Eee
Confidence 544
No 150
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.75 E-value=1.1e-07 Score=78.94 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=67.6
Q ss_pred CCCc-EEEEEecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcc---------------------------cHhHHHH
Q 019115 72 KNRN-VMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------------EKDLAKE 122 (346)
Q Consensus 72 ~~~~-~~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~---------------------------~~~~~~~ 122 (346)
.++. +++.||++||+.|..+.+.+.++++++++ ++.++.|+++. +..+++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 4565 46789999999999999999999999976 78888888764 2356788
Q ss_pred CCCC-------CCcEEEEEe-CCeeeEEee----CCCCHHHHHHHHHHH
Q 019115 123 YNIL-------AYPTLYLFV-AGVRQFQFF----GERTRDVISAWVREK 159 (346)
Q Consensus 123 ~~i~-------~~Pt~~~~~-~g~~~~~~~----g~~~~~~l~~~i~~~ 159 (346)
||+. ..|++++++ +|++...+. ..++.+++.+.+...
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 8873 689999998 887655432 235777887777643
No 151
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.73 E-value=8e-08 Score=66.28 Aligned_cols=69 Identities=17% Similarity=0.285 Sum_probs=49.9
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHH-----CCCCCCcEEEEEeCCeeeEEeeCCCCHHH
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKE-----YNILAYPTLYLFVAGVRQFQFFGERTRDV 151 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~-----~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~ 151 (346)
++.||++||++|++..+.+.++ ++.+-.+|+++++..... +++.++|++ ++++|..+. ..+..+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~------~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~----~~~~~~ 70 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL------GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT----NPSAAQ 70 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec----CCCHHH
Confidence 5789999999999999988765 345667888877766655 389999997 577774433 344445
Q ss_pred HHHHH
Q 019115 152 ISAWV 156 (346)
Q Consensus 152 l~~~i 156 (346)
+.+.+
T Consensus 71 ~~~~l 75 (77)
T TIGR02200 71 VKAKL 75 (77)
T ss_pred HHHHh
Confidence 55544
No 152
>PRK15000 peroxidase; Provisional
Probab=98.71 E-value=1.4e-07 Score=77.64 Aligned_cols=87 Identities=16% Similarity=0.282 Sum_probs=69.9
Q ss_pred CCCcEEEEEec-CCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcc----------------------------cHhHHH
Q 019115 72 KNRNVMVMFYA-NWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAK 121 (346)
Q Consensus 72 ~~~~~~v~F~a-~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~ 121 (346)
+++++++.||+ .||+.|..+.+.+.++++++++ ++.++.|.++. +.++++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 57899999999 5999999999999999999976 78888887752 225677
Q ss_pred HCCCC------CCcEEEEEe-CCeeeEEeeC----CCCHHHHHHHHHH
Q 019115 122 EYNIL------AYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVRE 158 (346)
Q Consensus 122 ~~~i~------~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~ 158 (346)
.||+. ..|+.++++ +|++...+.| .++.+++.+.++.
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 88887 689999998 8977666654 3677777777754
No 153
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.71 E-value=2.2e-06 Score=82.11 Aligned_cols=179 Identities=13% Similarity=0.110 Sum_probs=131.8
Q ss_pred CCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEe-CCe-eeEEeeCCCCH
Q 019115 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV-AGV-RQFQFFGERTR 149 (346)
Q Consensus 72 ~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~-~g~-~~~~~~g~~~~ 149 (346)
++.+.++.|+.+.|..|..+...++++++. .+++.+...|..++.+++++|++...|++.+++ +|+ .-.+|.|-..-
T Consensus 365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~-s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G 443 (555)
T TIGR03143 365 ENPVTLLLFLDGSNEKSAELQSFLGEFASL-SEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSG 443 (555)
T ss_pred CCCEEEEEEECCCchhhHHHHHHHHHHHhc-CCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCcc
Confidence 345578889999999999999999999854 558888889999999999999999999999996 553 34789999888
Q ss_pred HHHHHHHHHHcC--CCceeccChhHHHHhhcc-CCeEEEEEecCCCCccHHHHH---HHhccCCceeEE---EecCHHHH
Q 019115 150 DVISAWVREKMT--LGTYSITTTDEAERILTV-ESKLVLGFLHDLEGMESEELA---AASKLHSDVNFY---QTTSADVA 220 (346)
Q Consensus 150 ~~l~~~i~~~~~--~~~~~i~s~~~~~~~~~~-~~~~~v~f~~~~~~~~~~~~~---~~a~~~~~~~f~---~~~~~~~~ 220 (346)
.++..||...+. ..-..+ +.+..+.+..- .+..+-.|..++|..+..... .++...+++..- ....++++
T Consensus 444 ~Ef~s~i~~i~~~~~~~~~l-~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~ 522 (555)
T TIGR03143 444 HELNSFILALYNAAGPGQPL-GEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLK 522 (555)
T ss_pred HhHHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHH
Confidence 888888887752 223334 54555555443 444566678999988665443 344333344432 34668999
Q ss_pred hhcCCCCCCCCCeEEEEecCCCccccCCCCCCHHHHHHHH
Q 019115 221 EFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFV 260 (346)
Q Consensus 221 ~~~~v~~~~~~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi 260 (346)
++|++- +.|++++- ....+.|..+.+++..||
T Consensus 523 ~~~~v~---~vP~~~i~-----~~~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 523 DEYGIM---SVPAIVVD-----DQQVYFGKKTIEEMLELI 554 (555)
T ss_pred HhCCce---ecCEEEEC-----CEEEEeeCCCHHHHHHhh
Confidence 999998 58998862 224577888889999886
No 154
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.70 E-value=2e-07 Score=79.16 Aligned_cols=88 Identities=16% Similarity=0.208 Sum_probs=68.3
Q ss_pred CCCcEEEEEe-cCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcc----------------------------cHhHHH
Q 019115 72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAK 121 (346)
Q Consensus 72 ~~~~~~v~F~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~ 121 (346)
+++++++.|| ++||+.|..+.+.+.++++++++ ++.++.|.+|. +.++++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 5667777777 89999999999999999999976 67787777653 235788
Q ss_pred HCCCC-----CCcEEEEEe-CCeeeEEee----CCCCHHHHHHHHHHH
Q 019115 122 EYNIL-----AYPTLYLFV-AGVRQFQFF----GERTRDVISAWVREK 159 (346)
Q Consensus 122 ~~~i~-----~~Pt~~~~~-~g~~~~~~~----g~~~~~~l~~~i~~~ 159 (346)
.||+. ..|+.++++ +|++...+. ..++.+++.+.|+..
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 89985 589999998 897766542 346788887777543
No 155
>PRK13189 peroxiredoxin; Provisional
Probab=98.70 E-value=2.1e-07 Score=77.83 Aligned_cols=88 Identities=14% Similarity=0.205 Sum_probs=66.4
Q ss_pred CCC-cEEEEEecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcc---------------------------cHhHHHH
Q 019115 72 KNR-NVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------------EKDLAKE 122 (346)
Q Consensus 72 ~~~-~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~---------------------------~~~~~~~ 122 (346)
+++ .+++.||++||+.|..+.+.+.++++++++ ++.++.|.++. +.++++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 566 455678899999999999999999999976 78888877653 2356788
Q ss_pred CCCC-------CCcEEEEEe-CCeeeEEee----CCCCHHHHHHHHHHH
Q 019115 123 YNIL-------AYPTLYLFV-AGVRQFQFF----GERTRDVISAWVREK 159 (346)
Q Consensus 123 ~~i~-------~~Pt~~~~~-~g~~~~~~~----g~~~~~~l~~~i~~~ 159 (346)
||+. ..|++++++ +|++...+. ..++.+++.+.++..
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8875 468999998 886654443 456777887777644
No 156
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.68 E-value=2.7e-07 Score=76.74 Aligned_cols=88 Identities=15% Similarity=0.177 Sum_probs=67.0
Q ss_pred CCCcEEE-EEecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcc---------------------------cHhHHHH
Q 019115 72 KNRNVMV-MFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------------EKDLAKE 122 (346)
Q Consensus 72 ~~~~~~v-~F~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~---------------------------~~~~~~~ 122 (346)
+++.++| .||++||+.|..+.+.+.++++++++ ++.++.|+++. +.+++++
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 5665554 78999999999999999999999976 78888887753 2356778
Q ss_pred CCCC-------CCcEEEEEe-CCeeeEEee----CCCCHHHHHHHHHHH
Q 019115 123 YNIL-------AYPTLYLFV-AGVRQFQFF----GERTRDVISAWVREK 159 (346)
Q Consensus 123 ~~i~-------~~Pt~~~~~-~g~~~~~~~----g~~~~~~l~~~i~~~ 159 (346)
||+. ..|+.++++ +|++...+. ..++.+++.+.++..
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8863 368999998 887655443 236888888888654
No 157
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.67 E-value=2.5e-07 Score=68.51 Aligned_cols=94 Identities=16% Similarity=0.242 Sum_probs=70.1
Q ss_pred ceeccChhHHHHhhc-cCCeEEEEEecCCCCc---cHHHHHHHh-ccCCceeEEEe---c--CHHHHhhcCCCCCCCCCe
Q 019115 164 TYSITTTDEAERILT-VESKLVLGFLHDLEGM---ESEELAAAS-KLHSDVNFYQT---T--SADVAEFFHIHPKSKRPA 233 (346)
Q Consensus 164 ~~~i~s~~~~~~~~~-~~~~~~v~f~~~~~~~---~~~~~~~~a-~~~~~~~f~~~---~--~~~~~~~~~v~~~~~~p~ 233 (346)
+.+++ .+++++.+. .+.+++|.|+.+||.+ ..+.+.+++ .+.+.+.|+.+ . +.++++.|+++ ++|+
T Consensus 2 v~~l~-~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~---~~Pt 77 (109)
T cd03002 2 VYELT-PKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQ---GFPT 77 (109)
T ss_pred eEEcc-hhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCC---cCCE
Confidence 44554 456666664 4566999999999987 445566666 45556666643 2 56799999998 5999
Q ss_pred EEEEecCC----CccccCCCCCCHHHHHHHHh
Q 019115 234 LIFLHLEA----GKATPFRHQFTRLAIANFVT 261 (346)
Q Consensus 234 i~~~~~~~----~~~~~y~g~~~~~~l~~fi~ 261 (346)
+++|++++ .....|.|..+.++|.+||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 78 LKVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EEEEeCCCcccccccccccCccCHHHHHHHhC
Confidence 99999885 35678999999999999984
No 158
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.67 E-value=9.5e-07 Score=64.30 Aligned_cols=103 Identities=22% Similarity=0.342 Sum_probs=80.5
Q ss_pred CcEEcChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHH-HHccC--CcEEEEEeCc-----ccHhHHHHCCC--C
Q 019115 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAA-KMLKG--EADLVMVDAY-----LEKDLAKEYNI--L 126 (346)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~-~~~~~--~v~~~~v~~~-----~~~~~~~~~~i--~ 126 (346)
...+|+.-+|++.+.+.+.++|.|-... |--.-+.+|.++| +..+. ++-++.|.+. +|.+++++|++ .
T Consensus 5 G~v~LD~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke 82 (126)
T PF07912_consen 5 GCVPLDELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKE 82 (126)
T ss_dssp TSEEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCC
T ss_pred ceeeccceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcc
Confidence 5678999999999999999999998654 3345567899999 44333 8999999875 46899999999 5
Q ss_pred CCcEEEEEe-CCeeeEEe--eCCCCHHHHHHHHHHHcC
Q 019115 127 AYPTLYLFV-AGVRQFQF--FGERTRDVISAWVREKMT 161 (346)
Q Consensus 127 ~~Pt~~~~~-~g~~~~~~--~g~~~~~~l~~~i~~~~~ 161 (346)
.+|.+++|. +.+...+| .|..+.+.|.+|+.++.+
T Consensus 83 ~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 83 DFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp C-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred cCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 699999999 44667888 899999999999998764
No 159
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.67 E-value=3e-07 Score=63.11 Aligned_cols=73 Identities=16% Similarity=0.399 Sum_probs=56.9
Q ss_pred EEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCeeeEEeeC-CCCHHHHHHHH
Q 019115 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFG-ERTRDVISAWV 156 (346)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g-~~~~~~l~~~i 156 (346)
|.+++++|++|......+++++++++ +.+-.++..+.+++ .+|||.++|++++ ||+ ..+.| ..+.+++.+||
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~--~~~~G~~p~~~el~~~l 75 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGK--VVFVGRVPSKEELKELL 75 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTE--EEEESS--HHHHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCE--EEEEecCCCHHHHHHHh
Confidence 34478889999999999999999883 66666777666666 9999999999966 784 46788 78889998887
Q ss_pred H
Q 019115 157 R 157 (346)
Q Consensus 157 ~ 157 (346)
+
T Consensus 76 ~ 76 (76)
T PF13192_consen 76 E 76 (76)
T ss_dssp H
T ss_pred C
Confidence 4
No 160
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.61 E-value=5.2e-07 Score=66.02 Aligned_cols=92 Identities=13% Similarity=0.147 Sum_probs=71.0
Q ss_pred eeccChhHHHHhhcc-CCeEEEEEecCCCCc---cHHHHHHHh-ccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEE
Q 019115 165 YSITTTDEAERILTV-ESKLVLGFLHDLEGM---ESEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIF 236 (346)
Q Consensus 165 ~~i~s~~~~~~~~~~-~~~~~v~f~~~~~~~---~~~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~v~~~~~~p~i~~ 236 (346)
.++ +.+++++.+.+ ...+++.|+.+||.+ ..+.+..++ ++.+.+.|+.. .+.++++.++++ ++|++++
T Consensus 3 ~~l-~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~---~~P~~~~ 78 (103)
T cd03001 3 VEL-TDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVR---GFPTIKV 78 (103)
T ss_pred EEc-CHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCC---ccCEEEE
Confidence 445 44667776644 555888999999987 445566666 56667777754 567899999998 5999999
Q ss_pred EecCCCccccCCCCCCHHHHHHHH
Q 019115 237 LHLEAGKATPFRHQFTRLAIANFV 260 (346)
Q Consensus 237 ~~~~~~~~~~y~g~~~~~~l~~fi 260 (346)
|+.+......|.|..+.++|.+|+
T Consensus 79 ~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 79 FGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred ECCCCcceeecCCCCCHHHHHHHh
Confidence 998766788899999999999997
No 161
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=3.1e-07 Score=69.75 Aligned_cols=93 Identities=12% Similarity=0.281 Sum_probs=74.9
Q ss_pred ccChhHHH-HhhccCCeEEEEEecCCCCc---cHHHHHHHh-ccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEe
Q 019115 167 ITTTDEAE-RILTVESKLVLGFLHDLEGM---ESEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLH 238 (346)
Q Consensus 167 i~s~~~~~-~~~~~~~~~~v~f~~~~~~~---~~~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~v~~~~~~p~i~~~~ 238 (346)
+.+.++++ +.++++.+++|.|+++||++ ..+.+.+++ ++.+.+.|+.+ .+.+++..|+|+ ..|++++|+
T Consensus 47 ~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~---avPtvlvfk 123 (150)
T KOG0910|consen 47 VQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEIS---AVPTVLVFK 123 (150)
T ss_pred ccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhccee---eeeEEEEEE
Confidence 34555555 55577889999999999999 566677766 67899999875 567899999999 599999999
Q ss_pred cCCCccccCCCCCCHHHHHHHHhcc
Q 019115 239 LEAGKATPFRHQFTRLAIANFVTHT 263 (346)
Q Consensus 239 ~~~~~~~~y~g~~~~~~l~~fi~~~ 263 (346)
.|. ....+-|-.+.+.|..||++.
T Consensus 124 nGe-~~d~~vG~~~~~~l~~~i~k~ 147 (150)
T KOG0910|consen 124 NGE-KVDRFVGAVPKEQLRSLIKKF 147 (150)
T ss_pred CCE-EeeeecccCCHHHHHHHHHHH
Confidence 874 557888888999999999863
No 162
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.60 E-value=5.7e-07 Score=67.14 Aligned_cols=94 Identities=11% Similarity=0.165 Sum_probs=66.7
Q ss_pred CceeccChhHHHHhhccCC-eEEEEEecCCCCc--cH-----HHHHH-Hhcc--CCceeEEEe---cCHHHHhhcCCCCC
Q 019115 163 GTYSITTTDEAERILTVES-KLVLGFLHDLEGM--ES-----EELAA-ASKL--HSDVNFYQT---TSADVAEFFHIHPK 228 (346)
Q Consensus 163 ~~~~i~s~~~~~~~~~~~~-~~~v~f~~~~~~~--~~-----~~~~~-~a~~--~~~~~f~~~---~~~~~~~~~~v~~~ 228 (346)
.+..+ +.+++++.+.+++ ++++.|.+.||++ .. +.+.+ ++.+ .+++.|+.+ .+.+++++|++.
T Consensus 10 ~v~~l-t~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~-- 86 (120)
T cd03065 10 RVIDL-NEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLD-- 86 (120)
T ss_pred ceeeC-ChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCc--
Confidence 34455 4477887776665 5555555566644 33 23334 4455 667888764 678999999998
Q ss_pred CCCCeEEEEecCCCccccCCCCCCHHHHHHHHhc
Q 019115 229 SKRPALIFLHLEAGKATPFRHQFTRLAIANFVTH 262 (346)
Q Consensus 229 ~~~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~ 262 (346)
++||+++|+++. ...|.|..+.+.|.+||++
T Consensus 87 -~iPTl~lfk~G~--~v~~~G~~~~~~l~~~l~~ 117 (120)
T cd03065 87 -EEDSIYVFKDDE--VIEYDGEFAADTLVEFLLD 117 (120)
T ss_pred -cccEEEEEECCE--EEEeeCCCCHHHHHHHHHH
Confidence 699999999774 4459999999999999974
No 163
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.58 E-value=6.6e-07 Score=75.55 Aligned_cols=86 Identities=19% Similarity=0.251 Sum_probs=71.4
Q ss_pred CCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCccc-----------HhHHHHCCCCCCcEEEEEe-CCeee
Q 019115 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-----------KDLAKEYNILAYPTLYLFV-AGVRQ 140 (346)
Q Consensus 73 ~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~-----------~~~~~~~~i~~~Pt~~~~~-~g~~~ 140 (346)
++.-++.||.+.|++|+++.|.++.++++++ +.+..|++|.. ...++++||..+|++++++ +++..
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 4688999999999999999999999999984 77777777754 5689999999999999998 43333
Q ss_pred E-EeeCCCCHHHHHHHHHHHc
Q 019115 141 F-QFFGERTRDVISAWVREKM 160 (346)
Q Consensus 141 ~-~~~g~~~~~~l~~~i~~~~ 160 (346)
. .-.|..+.++|.+-|....
T Consensus 228 ~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 228 SPLAYGFISQDELKERILNVL 248 (256)
T ss_pred EEEeeccCCHHHHHHHHHHHH
Confidence 3 3459999999998887665
No 164
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=7e-07 Score=72.05 Aligned_cols=83 Identities=17% Similarity=0.292 Sum_probs=73.4
Q ss_pred HHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCeeeEEeeCCCC
Q 019115 69 FMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERT 148 (346)
Q Consensus 69 ~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~ 148 (346)
...+++..++.|||+||.+|.++...++.+++.. .++.+++++.++.++++..+.+...|.+.++..|+.+.+..|...
T Consensus 13 ~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~ 91 (227)
T KOG0911|consen 13 LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADP 91 (227)
T ss_pred HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCc
Confidence 3347889999999999999999999999999988 589999999999999999999999999999998888888887765
Q ss_pred HHHH
Q 019115 149 RDVI 152 (346)
Q Consensus 149 ~~~l 152 (346)
....
T Consensus 92 ~~~~ 95 (227)
T KOG0911|consen 92 PFLV 95 (227)
T ss_pred HHHH
Confidence 5433
No 165
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.57 E-value=5.3e-07 Score=76.93 Aligned_cols=103 Identities=18% Similarity=0.231 Sum_probs=77.5
Q ss_pred CCcEEcC-hhcHHHHHcC---CCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEE
Q 019115 56 KDVVSLN-GKNFSEFMGK---NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL 131 (346)
Q Consensus 56 ~~v~~l~-~~~~~~~~~~---~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~ 131 (346)
..+.+++ ++.|-..+.+ +..|+|.||.+.++.|..+...|..||.+|. .+.|++|.....+ ++..|.+...||+
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp-~vKFvkI~a~~~~-~~~~f~~~~LPtl 202 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP-EVKFVKIRASKCP-ASENFPDKNLPTL 202 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T-TSEEEEEEECGCC-TTTTS-TTC-SEE
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEEehhccC-cccCCcccCCCEE
Confidence 4677885 5777777743 3469999999999999999999999999998 7999999887654 7889999999999
Q ss_pred EEEeCCeeeEEeeC-------CCCHHHHHHHHHHHc
Q 019115 132 YLFVAGVRQFQFFG-------ERTRDVISAWVREKM 160 (346)
Q Consensus 132 ~~~~~g~~~~~~~g-------~~~~~~l~~~i~~~~ 160 (346)
++|++|..+..+.| ..+.+.+..|+.++-
T Consensus 203 lvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G 238 (265)
T PF02114_consen 203 LVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYG 238 (265)
T ss_dssp EEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTT
T ss_pred EEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcC
Confidence 99999988777754 355667777777653
No 166
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.56 E-value=8e-07 Score=73.38 Aligned_cols=88 Identities=17% Similarity=0.345 Sum_probs=66.5
Q ss_pred cCCCcEEEEEec-CCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcc----------------------------cHhHH
Q 019115 71 GKNRNVMVMFYA-NWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLA 120 (346)
Q Consensus 71 ~~~~~~~v~F~a-~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~ 120 (346)
..+++++|.||+ +||++|..+.+.+.++++++++ ++.++.|+++. +.+++
T Consensus 34 ~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia 113 (199)
T PTZ00253 34 YKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIA 113 (199)
T ss_pred HCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHH
Confidence 357899999995 8899999999999999999976 78888887752 23577
Q ss_pred HHCCCC------CCcEEEEEe-CCeeeEEeeC----CCCHHHHHHHHHH
Q 019115 121 KEYNIL------AYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVRE 158 (346)
Q Consensus 121 ~~~~i~------~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~ 158 (346)
+.||+. .+|+.++++ +|++...+.+ .++.+++.+.+..
T Consensus 114 ~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a 162 (199)
T PTZ00253 114 RSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEA 162 (199)
T ss_pred HHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHh
Confidence 888985 468999998 8866555443 3455556555543
No 167
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.55 E-value=1.8e-06 Score=64.29 Aligned_cols=89 Identities=10% Similarity=0.023 Sum_probs=70.4
Q ss_pred HHcCCCcEEEEEecC----CChhHhhhh--HHHHHHHHHccCCcEEEEEeCcc--cHhHHHHCCCCCCcEEEEEe----C
Q 019115 69 FMGKNRNVMVMFYAN----WCYWSKKLA--PEFAAAAKMLKGEADLVMVDAYL--EKDLAKEYNILAYPTLYLFV----A 136 (346)
Q Consensus 69 ~~~~~~~~~v~F~a~----wC~~C~~~~--p~~~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~----~ 136 (346)
.-++.|.++|++|++ ||..|+... |.+.+. ++.++.+...|++. ..+++..++++++|++.++. +
T Consensus 13 ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~---ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~ 89 (116)
T cd02991 13 AKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEY---INTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNR 89 (116)
T ss_pred HHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHH---HHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCc
Confidence 335789999999999 999997765 344433 34478888888864 35789999999999999994 3
Q ss_pred CeeeEEeeCCCCHHHHHHHHHHHc
Q 019115 137 GVRQFQFFGERTRDVISAWVREKM 160 (346)
Q Consensus 137 g~~~~~~~g~~~~~~l~~~i~~~~ 160 (346)
.+++.+..|..+++++...++..+
T Consensus 90 ~~vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 90 MTIVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred eEEEEEEeCCCCHHHHHHHHHHHH
Confidence 346888999999999999988765
No 168
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.54 E-value=4.8e-07 Score=70.50 Aligned_cols=82 Identities=20% Similarity=0.327 Sum_probs=57.8
Q ss_pred EcChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHH---HHHHHHccCCcEEEEEeCcccHhHHHHC--------CCCCC
Q 019115 60 SLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLEKDLAKEY--------NILAY 128 (346)
Q Consensus 60 ~l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~~~~~~~~~~--------~i~~~ 128 (346)
..+++.++....++|+++|.++.+||..|+.|..+- .++++.++.++.-++||.++.+++...| |..|+
T Consensus 24 ~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGw 103 (163)
T PF03190_consen 24 PWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGW 103 (163)
T ss_dssp -SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---S
T ss_pred cCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCC
Confidence 446678888888999999999999999999988633 4466666667888999999999998888 78999
Q ss_pred cEEEEEe-CCeeeE
Q 019115 129 PTLYLFV-AGVRQF 141 (346)
Q Consensus 129 Pt~~~~~-~g~~~~ 141 (346)
|+.++.. +|+...
T Consensus 104 Pl~vfltPdg~p~~ 117 (163)
T PF03190_consen 104 PLTVFLTPDGKPFF 117 (163)
T ss_dssp SEEEEE-TTS-EEE
T ss_pred CceEEECCCCCeee
Confidence 9999998 886543
No 169
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.54 E-value=1e-06 Score=64.26 Aligned_cols=90 Identities=17% Similarity=0.256 Sum_probs=70.7
Q ss_pred hhHHHHhhccCCeEEEEEecCCCCcc---HHHHHHHh-ccCC--ceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEecC
Q 019115 170 TDEAERILTVESKLVLGFLHDLEGME---SEELAAAS-KLHS--DVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLE 240 (346)
Q Consensus 170 ~~~~~~~~~~~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~--~~~f~~~---~~~~~~~~~~v~~~~~~p~i~~~~~~ 240 (346)
.+.++..+.++++++|.|+.+||... .+.+..++ .+.+ ++.|+.. .+..+++.|++. ++|++++|+++
T Consensus 3 ~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~---~~P~~~~~~~~ 79 (102)
T TIGR01126 3 ASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVS---GFPTIKFFPKG 79 (102)
T ss_pred hhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCC---cCCEEEEecCC
Confidence 45677777788889999999999884 34455555 3443 5777643 567899999998 59999999988
Q ss_pred CCccccCCCCCCHHHHHHHHhcc
Q 019115 241 AGKATPFRHQFTRLAIANFVTHT 263 (346)
Q Consensus 241 ~~~~~~y~g~~~~~~l~~fi~~~ 263 (346)
+. ...|.|..+.++|..||+++
T Consensus 80 ~~-~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 80 KK-PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred Cc-ceeecCCCCHHHHHHHHHhc
Confidence 64 78899999999999999875
No 170
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.51 E-value=1.4e-06 Score=73.17 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=69.6
Q ss_pred CCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcc-----------cHhHHHHCCCCCCcEEEEEe-C-Cee
Q 019115 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-----------EKDLAKEYNILAYPTLYLFV-A-GVR 139 (346)
Q Consensus 73 ~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~-----------~~~~~~~~~i~~~Pt~~~~~-~-g~~ 139 (346)
++.-|+.||.+.|++|+++.|.++.++++++ +.+..|++|. +...++++||..+|++++++ + ++.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg--~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG--LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 4688999999999999999999999999984 6777776653 33467899999999999998 3 333
Q ss_pred eEEeeCCCCHHHHHHHHHHHc
Q 019115 140 QFQFFGERTRDVISAWVREKM 160 (346)
Q Consensus 140 ~~~~~g~~~~~~l~~~i~~~~ 160 (346)
.-.-.|..+.++|.+-+....
T Consensus 221 ~pv~~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 221 RPLSYGFITQDDLAKRFLNVS 241 (248)
T ss_pred EEEeeccCCHHHHHHHHHHHH
Confidence 334459999999988887664
No 171
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.50 E-value=4.1e-06 Score=71.96 Aligned_cols=162 Identities=13% Similarity=0.167 Sum_probs=108.7
Q ss_pred CceeccChhHHHHhhccCCeEEEEEecCCCCc--------cHHHHHHH-hc--cCCceeEEEe---cCHHHHhhcCCCCC
Q 019115 163 GTYSITTTDEAERILTVESKLVLGFLHDLEGM--------ESEELAAA-SK--LHSDVNFYQT---TSADVAEFFHIHPK 228 (346)
Q Consensus 163 ~~~~i~s~~~~~~~~~~~~~~~v~f~~~~~~~--------~~~~~~~~-a~--~~~~~~f~~~---~~~~~~~~~~v~~~ 228 (346)
.+..+ +..++++.+.+.+..+|.|+.+-.+. ..+.+.++ |. -...+.||.+ .+..+++++|+..
T Consensus 35 RVi~L-neKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E- 112 (383)
T PF01216_consen 35 RVIDL-NEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEE- 112 (383)
T ss_dssp -CEEE--TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--S-
T ss_pred ceEEc-chhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccc-
Confidence 35555 66889999999999999998875543 11223333 32 3567888875 5778999999995
Q ss_pred CCCCeEEEEecCCCccccCCCCCCHHHHHHHHhccCCCceEeecccchhhhccC-C-CcEEEEEeeCCCchHHHHHHHHH
Q 019115 229 SKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQD-P-RKQLWLFAPAYGSDKVILTFEEV 306 (346)
Q Consensus 229 ~~~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~p~~~~lt~~~~~~~~~~-~-~~~~~~f~~~~~~~~~~~~~~~~ 306 (346)
.++|.+|+.+ +.+.|+|.++++.|.+||..---..+..++...-.+.|++ . .+.++-|.....+. .-..|..+
T Consensus 113 --~~SiyVfkd~--~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~-~yk~FeeA 187 (383)
T PF01216_consen 113 --EGSIYVFKDG--EVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSEDSE-HYKEFEEA 187 (383)
T ss_dssp --TTEEEEEETT--EEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSH-HHHHHHHH
T ss_pred --cCcEEEEECC--cEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCCcH-HHHHHHHH
Confidence 7999999976 8999999999999999998766666877876554444544 2 36666666555544 45789999
Q ss_pred HHHhcCceEEEEEECCCcccccchhhhcCCC
Q 019115 307 AKALKGKLLHVYVEMNSEGVGRRVSQEFGVS 337 (346)
Q Consensus 307 a~~~~~~~~f~~vd~~~~~~~~~~~~~~gi~ 337 (346)
|..|..-+.|..+ |++.+.+.+|+.
T Consensus 188 Ae~F~p~IkFfAt------fd~~vAk~L~lK 212 (383)
T PF01216_consen 188 AEHFQPYIKFFAT------FDKKVAKKLGLK 212 (383)
T ss_dssp HHHCTTTSEEEEE-------SHHHHHHHT-S
T ss_pred HHhhcCceeEEEE------ecchhhhhcCcc
Confidence 9999999999877 245778888875
No 172
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.48 E-value=1.4e-07 Score=69.59 Aligned_cols=75 Identities=17% Similarity=0.090 Sum_probs=57.5
Q ss_pred EeecccchhhhccCCCcEEEE--Ee--eCCCchHHHHHHHHHHHHhc-CceEEEEEECCCcccccchhhhcCCCCCC--C
Q 019115 269 VTLTIHNAQFVFQDPRKQLWL--FA--PAYGSDKVILTFEEVAKALK-GKLLHVYVEMNSEGVGRRVSQEFGVSGNA--P 341 (346)
Q Consensus 269 ~~lt~~~~~~~~~~~~~~~~~--f~--~~~~~~~~~~~~~~~a~~~~-~~~~f~~vd~~~~~~~~~~~~~~gi~~~~--~ 341 (346)
.++|.+|...++..+.+++++ +. ..++.+.+...++.+|++++ +++.|+++|.+++. ..++.||++.++ .
T Consensus 2 ~~~~~en~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~---~~l~~fgl~~~~~~~ 78 (111)
T cd03073 2 GHRTKDNRAQFTKKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFS---HELEEFGLDFSGGEK 78 (111)
T ss_pred CeeccchHHHhccCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHH---HHHHHcCCCcccCCC
Confidence 467888888886554433332 11 22336789999999999999 79999999999754 589999999877 9
Q ss_pred ccccC
Q 019115 342 RVSSL 346 (346)
Q Consensus 342 P~~~i 346 (346)
|+++|
T Consensus 79 P~~~i 83 (111)
T cd03073 79 PVVAI 83 (111)
T ss_pred CEEEE
Confidence 99875
No 173
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.46 E-value=4.5e-07 Score=63.66 Aligned_cols=58 Identities=21% Similarity=0.352 Sum_probs=45.2
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccH-----hHHHHCCCCCCcEEEEEeCCe
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-----DLAKEYNILAYPTLYLFVAGV 138 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~-----~~~~~~~i~~~Pt~~~~~~g~ 138 (346)
++.|+++||++|++..+.+.++. .++.+.+..||.+++. .+.+.+|+.++|++++ +|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~ 63 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGK 63 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCE
Confidence 47899999999999999999876 3334778888876543 3667789999999844 774
No 174
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.45 E-value=6.3e-07 Score=70.36 Aligned_cols=84 Identities=26% Similarity=0.279 Sum_probs=76.3
Q ss_pred ChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCeeeE
Q 019115 62 NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQF 141 (346)
Q Consensus 62 ~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 141 (346)
+...|-....++..|++.||-+.-..|+-+...++.+|+.+- ...|++||....|-++.+++|..+|++.+|.+|+...
T Consensus 73 ~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~-eTrFikvnae~~PFlv~kL~IkVLP~v~l~k~g~~~D 151 (211)
T KOG1672|consen 73 SEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHV-ETRFIKVNAEKAPFLVTKLNIKVLPTVALFKNGKTVD 151 (211)
T ss_pred cHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcc-cceEEEEecccCceeeeeeeeeEeeeEEEEEcCEEEE
Confidence 467777777788889999999999999999999999999876 6899999999999999999999999999999998877
Q ss_pred EeeCC
Q 019115 142 QFFGE 146 (346)
Q Consensus 142 ~~~g~ 146 (346)
++.|.
T Consensus 152 ~iVGF 156 (211)
T KOG1672|consen 152 YVVGF 156 (211)
T ss_pred EEeeH
Confidence 77763
No 175
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.44 E-value=3e-07 Score=67.32 Aligned_cols=69 Identities=29% Similarity=0.303 Sum_probs=55.7
Q ss_pred chhhhccCCCcEEEEEeeC-C-CchHHHHHHHHHHHHhcCceEEEEEECCCcccccchhhhcCCCCCCCccccC
Q 019115 275 NAQFVFQDPRKQLWLFAPA-Y-GSDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVSSL 346 (346)
Q Consensus 275 ~~~~~~~~~~~~~~~f~~~-~-~~~~~~~~~~~~a~~~~~~~~f~~vd~~~~~~~~~~~~~~gi~~~~~P~~~i 346 (346)
++..+...+.|++++|... + +++...+.++++|++|++++.|+|+|+++. +.+++.||+.....|++++
T Consensus 4 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~---~~~~~~~~i~~~~~P~~~~ 74 (103)
T cd02982 4 TFFNYEESGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDF---GRHLEYFGLKEEDLPVIAI 74 (103)
T ss_pred HHhhhhhcCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhh---HHHHHHcCCChhhCCEEEE
Confidence 3344444456888888754 3 389999999999999999999999999984 4899999998778998764
No 176
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.41 E-value=2.3e-06 Score=60.23 Aligned_cols=76 Identities=20% Similarity=0.278 Sum_probs=56.7
Q ss_pred EEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccH----hHHHHCC--CCCCcEEEEEeCCeeeEEeeCCCCH
Q 019115 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK----DLAKEYN--ILAYPTLYLFVAGVRQFQFFGERTR 149 (346)
Q Consensus 76 ~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~----~~~~~~~--i~~~Pt~~~~~~g~~~~~~~g~~~~ 149 (346)
-++.|+.+||++|++....++++..+++ ++.+..+|+++++ ++.+..+ +.++|++++ +|+.+ | ..
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~-~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~i----g--g~ 72 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD-DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHI----G--GC 72 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc-CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEE----c--CH
Confidence 3678999999999999999999988763 7888888888653 4555554 588999864 77543 2 33
Q ss_pred HHHHHHHHHHc
Q 019115 150 DVISAWVREKM 160 (346)
Q Consensus 150 ~~l~~~i~~~~ 160 (346)
+++.++++..+
T Consensus 73 ~~~~~~~~~~~ 83 (85)
T PRK11200 73 TDFEAYVKENL 83 (85)
T ss_pred HHHHHHHHHhc
Confidence 66777776654
No 177
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.41 E-value=3.5e-06 Score=61.40 Aligned_cols=91 Identities=10% Similarity=0.120 Sum_probs=67.8
Q ss_pred ceeccChhHHHHhhccCCeEEEEEecCCCCc---cHHHHHHHhc-cC-CceeEEEe---cCHHHHhhcCCCCCCCCCeEE
Q 019115 164 TYSITTTDEAERILTVESKLVLGFLHDLEGM---ESEELAAASK-LH-SDVNFYQT---TSADVAEFFHIHPKSKRPALI 235 (346)
Q Consensus 164 ~~~i~s~~~~~~~~~~~~~~~v~f~~~~~~~---~~~~~~~~a~-~~-~~~~f~~~---~~~~~~~~~~v~~~~~~p~i~ 235 (346)
+.++ +.+++++.+... ++|.|+.+||.+ ..+.+.+++. .. .++.|+.+ .+..+++.+++. ++|+++
T Consensus 3 v~~l-~~~~f~~~~~~~--~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~---~~Pt~~ 76 (101)
T cd02994 3 VVEL-TDSNWTLVLEGE--WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVT---ALPTIY 76 (101)
T ss_pred eEEc-ChhhHHHHhCCC--EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCc---ccCEEE
Confidence 4566 456777776443 789999999987 4556666663 32 24666654 567899999998 599999
Q ss_pred EEecCCCccccCCCCCCHHHHHHHHhc
Q 019115 236 FLHLEAGKATPFRHQFTRLAIANFVTH 262 (346)
Q Consensus 236 ~~~~~~~~~~~y~g~~~~~~l~~fi~~ 262 (346)
+++++ ....|.|..+.++|.+||++
T Consensus 77 ~~~~g--~~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 77 HAKDG--VFRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred EeCCC--CEEEecCCCCHHHHHHHHhC
Confidence 99766 35789999999999999863
No 178
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.40 E-value=9.1e-07 Score=67.37 Aligned_cols=78 Identities=15% Similarity=0.233 Sum_probs=60.7
Q ss_pred CceEeecccch-hhhccCCCcEEEEEeeCC------CchHHHHHHHHHHHHhcCc-eEEEEEECCCcccccchhhhcCCC
Q 019115 266 PLVVTLTIHNA-QFVFQDPRKQLWLFAPAY------GSDKVILTFEEVAKALKGK-LLHVYVEMNSEGVGRRVSQEFGVS 337 (346)
Q Consensus 266 p~~~~lt~~~~-~~~~~~~~~~~~~f~~~~------~~~~~~~~~~~~a~~~~~~-~~f~~vd~~~~~~~~~~~~~~gi~ 337 (346)
|-+.+++.++. ...+.....+++.|.++. +.+.+...++++|++|+++ +.|+|+|++++. .+.+.||+.
T Consensus 2 ~~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~---~~~~~fgl~ 78 (130)
T cd02983 2 PEIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQL---DLEEALNIG 78 (130)
T ss_pred CceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccH---HHHHHcCCC
Confidence 45677775544 445555456677777642 2678899999999999999 999999999854 699999999
Q ss_pred CCCCccccC
Q 019115 338 GNAPRVSSL 346 (346)
Q Consensus 338 ~~~~P~~~i 346 (346)
+.+.|++++
T Consensus 79 ~~~~P~v~i 87 (130)
T cd02983 79 GFGYPAMVA 87 (130)
T ss_pred ccCCCEEEE
Confidence 889998764
No 179
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.40 E-value=3.3e-06 Score=62.49 Aligned_cols=93 Identities=11% Similarity=0.176 Sum_probs=67.4
Q ss_pred ceeccChhHHHHhhc---cCCeEEEEEecCCCCc---cHHHHHHHh-ccCC-ceeEEEe---c-CHHHHh-hcCCCCCCC
Q 019115 164 TYSITTTDEAERILT---VESKLVLGFLHDLEGM---ESEELAAAS-KLHS-DVNFYQT---T-SADVAE-FFHIHPKSK 230 (346)
Q Consensus 164 ~~~i~s~~~~~~~~~---~~~~~~v~f~~~~~~~---~~~~~~~~a-~~~~-~~~f~~~---~-~~~~~~-~~~v~~~~~ 230 (346)
+.++ +.++++.+.. ++.+++|.|+.+||.+ ..+.+.+++ .+.+ ++.++.+ . +..++. .++++ +
T Consensus 3 v~~~-~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~---~ 78 (109)
T cd02993 3 VVTL-SRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLK---S 78 (109)
T ss_pred ceec-cHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCC---c
Confidence 4455 4456776663 4678999999999987 445566666 4444 3667653 2 345665 58998 5
Q ss_pred CCeEEEEecCCCccccCCCC-CCHHHHHHHH
Q 019115 231 RPALIFLHLEAGKATPFRHQ-FTRLAIANFV 260 (346)
Q Consensus 231 ~p~i~~~~~~~~~~~~y~g~-~~~~~l~~fi 260 (346)
+|++++|+++......|+|+ ++.++|..||
T Consensus 79 ~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 79 FPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CCEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 99999999876678889995 7999999986
No 180
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.39 E-value=3.4e-06 Score=61.08 Aligned_cols=89 Identities=12% Similarity=0.235 Sum_probs=70.6
Q ss_pred ChhHHHHhhccCCeEEEEEecCCCCc---cHHHHHHHh-cc--CCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEec
Q 019115 169 TTDEAERILTVESKLVLGFLHDLEGM---ESEELAAAS-KL--HSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHL 239 (346)
Q Consensus 169 s~~~~~~~~~~~~~~~v~f~~~~~~~---~~~~~~~~a-~~--~~~~~f~~~---~~~~~~~~~~v~~~~~~p~i~~~~~ 239 (346)
+..++.+.+.+.+.++|.|+.+||.. ..+.+..++ .+ ...+.|+.+ .+..+++.++++ +.|++++|++
T Consensus 4 ~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~---~~Pt~~~~~~ 80 (101)
T cd02961 4 TDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVR---GYPTIKLFPN 80 (101)
T ss_pred cHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCC---CCCEEEEEcC
Confidence 44678888888778999999999987 444555655 45 477888765 356899999998 5999999998
Q ss_pred CCCccccCCCCCCHHHHHHHH
Q 019115 240 EAGKATPFRHQFTRLAIANFV 260 (346)
Q Consensus 240 ~~~~~~~y~g~~~~~~l~~fi 260 (346)
++.....|.|..+.++|.+|+
T Consensus 81 ~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcccccCCCCcCHHHHHhhC
Confidence 766788899998999998885
No 181
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.39 E-value=7.3e-06 Score=60.96 Aligned_cols=96 Identities=15% Similarity=0.164 Sum_probs=71.5
Q ss_pred CCceeccChhHHHHhhccCCeEEEEEecCCCCc---cHHHHHHHhccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEE
Q 019115 162 LGTYSITTTDEAERILTVESKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALI 235 (346)
Q Consensus 162 ~~~~~i~s~~~~~~~~~~~~~~~v~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~---~~~~~~~~~~v~~~~~~p~i~ 235 (346)
..+..+++.+++.+.+.+...++|.|+.+||.+ ..+.+.++++-..++.|..+ .+.++++.|++. ..|+++
T Consensus 4 g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~---~vPt~l 80 (113)
T cd02989 4 GKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIK---VLPTVI 80 (113)
T ss_pred CCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCc---cCCEEE
Confidence 356788888999999988889999999999988 44566677644456777764 566799999999 599999
Q ss_pred EEecCCCcc-----ccC-C-CCCCHHHHHHHH
Q 019115 236 FLHLEAGKA-----TPF-R-HQFTRLAIANFV 260 (346)
Q Consensus 236 ~~~~~~~~~-----~~y-~-g~~~~~~l~~fi 260 (346)
+|+.+.... ..+ . ++++.+++..|+
T Consensus 81 ~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 81 LFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 999874211 111 1 456778888876
No 182
>PHA02278 thioredoxin-like protein
Probab=98.39 E-value=2.5e-06 Score=62.06 Aligned_cols=88 Identities=10% Similarity=0.133 Sum_probs=66.5
Q ss_pred cChhHHHHhhccCCeEEEEEecCCCCc---cHHHHHHHhc-cCCceeEEEe--c-----CHHHHhhcCCCCCCCCCeEEE
Q 019115 168 TTTDEAERILTVESKLVLGFLHDLEGM---ESEELAAASK-LHSDVNFYQT--T-----SADVAEFFHIHPKSKRPALIF 236 (346)
Q Consensus 168 ~s~~~~~~~~~~~~~~~v~f~~~~~~~---~~~~~~~~a~-~~~~~~f~~~--~-----~~~~~~~~~v~~~~~~p~i~~ 236 (346)
.+.+++++.+.++..++|.|+++||++ ..+.+.+++. ...+..|..+ . ..++++.|++. +.|++++
T Consensus 2 ~~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~---~iPT~i~ 78 (103)
T PHA02278 2 NSLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIM---STPVLIG 78 (103)
T ss_pred CCHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCc---cccEEEE
Confidence 467788888888899999999999999 5566777663 3344445533 2 25799999999 5999999
Q ss_pred EecCCCccccCCCCCCHHHHHHH
Q 019115 237 LHLEAGKATPFRHQFTRLAIANF 259 (346)
Q Consensus 237 ~~~~~~~~~~y~g~~~~~~l~~f 259 (346)
|+++. ......|..+.+.|.+|
T Consensus 79 fk~G~-~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 79 YKDGQ-LVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EECCE-EEEEEeCCCCHHHHHhh
Confidence 99873 55667788788888776
No 183
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.38 E-value=1.6e-06 Score=65.80 Aligned_cols=86 Identities=17% Similarity=0.311 Sum_probs=51.7
Q ss_pred cChhcHHHHHc-CCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHC---CCCCCcEEEEEe-
Q 019115 61 LNGKNFSEFMG-KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEY---NILAYPTLYLFV- 135 (346)
Q Consensus 61 l~~~~~~~~~~-~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~---~i~~~Pt~~~~~- 135 (346)
++.+....+.. ..+..++.|..+|||.|....|.+.++++... ++.+--+.-++++++..+| |..++|++++++
T Consensus 28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~ 106 (129)
T PF14595_consen 28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDK 106 (129)
T ss_dssp --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-T
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcC
Confidence 34444443332 34567888999999999999999999999865 5666556667777776655 678999999997
Q ss_pred CCeeeEEeeCCCC
Q 019115 136 AGVRQFQFFGERT 148 (346)
Q Consensus 136 ~g~~~~~~~g~~~ 148 (346)
+|+++.++ |++.
T Consensus 107 ~~~~lg~w-gerP 118 (129)
T PF14595_consen 107 DGKELGRW-GERP 118 (129)
T ss_dssp T--EEEEE-ESS-
T ss_pred CCCEeEEE-cCCC
Confidence 66666555 4443
No 184
>PRK10996 thioredoxin 2; Provisional
Probab=98.38 E-value=3.6e-06 Score=65.18 Aligned_cols=91 Identities=11% Similarity=0.241 Sum_probs=71.9
Q ss_pred ChhHHHHhhccCCeEEEEEecCCCCc---cHHHHHHHh-ccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEecCC
Q 019115 169 TTDEAERILTVESKLVLGFLHDLEGM---ESEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEA 241 (346)
Q Consensus 169 s~~~~~~~~~~~~~~~v~f~~~~~~~---~~~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~v~~~~~~p~i~~~~~~~ 241 (346)
+.+++++.+.+++.++|.|+.+||.+ ..+.+.+++ ++.+++.|+.+ .+.++++.|++. ++|++++|+++
T Consensus 41 ~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~---~~Ptlii~~~G- 116 (139)
T PRK10996 41 TGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIR---SIPTIMIFKNG- 116 (139)
T ss_pred CHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCC---ccCEEEEEECC-
Confidence 56778888888889999999999998 345566666 45667777653 567899999998 59999999854
Q ss_pred CccccCCCCCCHHHHHHHHhcc
Q 019115 242 GKATPFRHQFTRLAIANFVTHT 263 (346)
Q Consensus 242 ~~~~~y~g~~~~~~l~~fi~~~ 263 (346)
.....+.|..+.+.|.+|+.+.
T Consensus 117 ~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 117 QVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEEEEEcCCCCHHHHHHHHHHh
Confidence 3566778999999999999854
No 185
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.37 E-value=2.2e-06 Score=62.30 Aligned_cols=77 Identities=10% Similarity=0.127 Sum_probs=61.2
Q ss_pred cCCeEEEEEecCCCCc---cHHHHHHHhccCCceeEEEe----cCHHHHhhcCCCCCCCCCeEEEEecCCCccccCCCCC
Q 019115 179 VESKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQT----TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQF 251 (346)
Q Consensus 179 ~~~~~~v~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~----~~~~~~~~~~v~~~~~~p~i~~~~~~~~~~~~y~g~~ 251 (346)
.+++++|.|+.+||.+ ..+.+.++++...++.|..+ .+.++++.|++. ++||+++|+.+ ....|.|..
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~---~~PT~~lf~~g--~~~~~~G~~ 91 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVV---GFPTILLFNST--PRVRYNGTR 91 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCe---ecCEEEEEcCC--ceeEecCCC
Confidence 5778999999999987 55667777743345555543 357899999998 59999999876 678899999
Q ss_pred CHHHHHHHH
Q 019115 252 TRLAIANFV 260 (346)
Q Consensus 252 ~~~~l~~fi 260 (346)
+.++|.+||
T Consensus 92 ~~~~l~~f~ 100 (100)
T cd02999 92 TLDSLAAFY 100 (100)
T ss_pred CHHHHHhhC
Confidence 999999986
No 186
>PRK09381 trxA thioredoxin; Provisional
Probab=98.37 E-value=5.1e-06 Score=61.46 Aligned_cols=97 Identities=12% Similarity=0.209 Sum_probs=71.3
Q ss_pred CCceeccChhHHH-HhhccCCeEEEEEecCCCCc---cHHHHHHHh-ccCCceeEEEe---cCHHHHhhcCCCCCCCCCe
Q 019115 162 LGTYSITTTDEAE-RILTVESKLVLGFLHDLEGM---ESEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPA 233 (346)
Q Consensus 162 ~~~~~i~s~~~~~-~~~~~~~~~~v~f~~~~~~~---~~~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~v~~~~~~p~ 233 (346)
..+.+++. ++++ ..++.+..+++.|+.+||.+ ..+.+.+++ ++.+++.|+.. .+..+++.+++. +.|+
T Consensus 3 ~~v~~~~~-~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~---~~Pt 78 (109)
T PRK09381 3 DKIIHLTD-DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIR---GIPT 78 (109)
T ss_pred CcceeeCh-hhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCC---cCCE
Confidence 45667755 4555 45566788999999999987 445566665 56666766653 567888999998 5999
Q ss_pred EEEEecCCCccccCCCCCCHHHHHHHHhcc
Q 019115 234 LIFLHLEAGKATPFRHQFTRLAIANFVTHT 263 (346)
Q Consensus 234 i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~ 263 (346)
+++|+.+. ....+.|..+.++|..||..+
T Consensus 79 ~~~~~~G~-~~~~~~G~~~~~~l~~~i~~~ 107 (109)
T PRK09381 79 LLLFKNGE-VAATKVGALSKGQLKEFLDAN 107 (109)
T ss_pred EEEEeCCe-EEEEecCCCCHHHHHHHHHHh
Confidence 99997653 455678888899999999754
No 187
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.37 E-value=3.4e-06 Score=61.71 Aligned_cols=93 Identities=12% Similarity=0.232 Sum_probs=67.4
Q ss_pred ceeccChhHHHHhhc-cCCeEEEEEecCCCCc---cHHHHHHHhc-cCC--ceeEEEec--CHHHHhhcCCCCCCCCCeE
Q 019115 164 TYSITTTDEAERILT-VESKLVLGFLHDLEGM---ESEELAAASK-LHS--DVNFYQTT--SADVAEFFHIHPKSKRPAL 234 (346)
Q Consensus 164 ~~~i~s~~~~~~~~~-~~~~~~v~f~~~~~~~---~~~~~~~~a~-~~~--~~~f~~~~--~~~~~~~~~v~~~~~~p~i 234 (346)
+..++ .+++++.+. .+..++|.|+.+||.+ ..+.+.++++ +.+ ++.|+... ..+++..+++. ++|++
T Consensus 2 v~~l~-~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~---~~Pt~ 77 (104)
T cd02995 2 VKVVV-GKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVD---GFPTI 77 (104)
T ss_pred eEEEc-hhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCC---CCCEE
Confidence 44553 456666654 4578889999999987 4556666663 333 57777543 33678888876 69999
Q ss_pred EEEecCC-CccccCCCCCCHHHHHHHH
Q 019115 235 IFLHLEA-GKATPFRHQFTRLAIANFV 260 (346)
Q Consensus 235 ~~~~~~~-~~~~~y~g~~~~~~l~~fi 260 (346)
++|+.+. .....|.|..+.++|.+||
T Consensus 78 ~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 78 LFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 9999875 4567899999999999986
No 188
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.35 E-value=4.6e-06 Score=61.12 Aligned_cols=92 Identities=14% Similarity=0.240 Sum_probs=68.9
Q ss_pred eeccChhHHHHhhccC-CeEEEEEecCCCCcc---HHHHHHHh-ccC--CceeEEEe---c-CHHHHhhcCCCCCCCCCe
Q 019115 165 YSITTTDEAERILTVE-SKLVLGFLHDLEGME---SEELAAAS-KLH--SDVNFYQT---T-SADVAEFFHIHPKSKRPA 233 (346)
Q Consensus 165 ~~i~s~~~~~~~~~~~-~~~~v~f~~~~~~~~---~~~~~~~a-~~~--~~~~f~~~---~-~~~~~~~~~v~~~~~~p~ 233 (346)
.+++ .++++..+.+. ..+++.|+.+||.+. .+.+..++ .+. +.+.|+.+ . +.++++.+++. ++|+
T Consensus 3 ~~l~-~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~---~~P~ 78 (105)
T cd02998 3 VELT-DSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVS---GFPT 78 (105)
T ss_pred EEcc-hhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCC---CcCE
Confidence 3453 35666666544 478889999999874 35566665 333 45666654 4 67899999998 5999
Q ss_pred EEEEecCCCccccCCCCCCHHHHHHHH
Q 019115 234 LIFLHLEAGKATPFRHQFTRLAIANFV 260 (346)
Q Consensus 234 i~~~~~~~~~~~~y~g~~~~~~l~~fi 260 (346)
+++|++++.....|.|..+.++|.+||
T Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 79 LKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEEEeCCCCCccccCCccCHHHHHhhC
Confidence 999998866788899999999999986
No 189
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.34 E-value=3.6e-06 Score=70.94 Aligned_cols=81 Identities=14% Similarity=0.259 Sum_probs=60.8
Q ss_pred CCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEe------------------C--------------------
Q 019115 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD------------------A-------------------- 113 (346)
Q Consensus 72 ~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~------------------~-------------------- 113 (346)
+++.+++.|..+.||+|+++.+++.++.+. ++.+..+. |
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~---~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL---GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC---CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 356789999999999999999998887542 23332211 1
Q ss_pred ------cccHhHHHHCCCCCCcEEEEEeCCeeeEEeeCCCCHHHHHHHHHHH
Q 019115 114 ------YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREK 159 (346)
Q Consensus 114 ------~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 159 (346)
+++.++++++||+++|+++ +.+|+. ..|..+.+.|.++|.+.
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~---~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNGTL---VPGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCCeE---eeCCCCHHHHHHHHHHc
Confidence 1235688999999999998 678853 47999999999998753
No 190
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.33 E-value=4.9e-06 Score=59.99 Aligned_cols=85 Identities=9% Similarity=0.160 Sum_probs=63.4
Q ss_pred HHHhh-cc-CCeEEEEEecCCCCc---cHHHHHHHh-ccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEecCCCc
Q 019115 173 AERIL-TV-ESKLVLGFLHDLEGM---ESEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAGK 243 (346)
Q Consensus 173 ~~~~~-~~-~~~~~v~f~~~~~~~---~~~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~v~~~~~~p~i~~~~~~~~~ 243 (346)
+++.+ ++ +.+++|.|+.+||.+ ..+.+.+++ .+.+.+.|+.+ .+..+++.|++. ++|++++|+.+ ..
T Consensus 3 f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~---~~Pt~~~~~~g-~~ 78 (96)
T cd02956 3 FQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQ---ALPTVYLFAAG-QP 78 (96)
T ss_pred hHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCC---CCCEEEEEeCC-EE
Confidence 44444 33 568999999999988 445566665 45556666543 678999999998 59999999854 35
Q ss_pred cccCCCCCCHHHHHHHHh
Q 019115 244 ATPFRHQFTRLAIANFVT 261 (346)
Q Consensus 244 ~~~y~g~~~~~~l~~fi~ 261 (346)
...|.|..+.++|..||+
T Consensus 79 ~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 79 VDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred eeeecCCCCHHHHHHHhC
Confidence 567899999999999974
No 191
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.33 E-value=4.1e-06 Score=70.33 Aligned_cols=111 Identities=13% Similarity=0.163 Sum_probs=82.4
Q ss_pred ccCCeEEEEEecCCCCc---cHHHHHHHh-ccC---CceeEE---EecCHHHHhhcCCCCCCCCCeEEEEecCCCccccC
Q 019115 178 TVESKLVLGFLHDLEGM---ESEELAAAS-KLH---SDVNFY---QTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPF 247 (346)
Q Consensus 178 ~~~~~~~v~f~~~~~~~---~~~~~~~~a-~~~---~~~~f~---~~~~~~~~~~~~v~~~~~~p~i~~~~~~~~~~~~y 247 (346)
.+++.|+|-||.+||.+ ..+.+.++. .++ .-++++ .+.-+.++..||++ +||+|.+|+.+ ....|
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiq---GYPTIk~~kgd--~a~dY 115 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQ---GYPTIKFFKGD--HAIDY 115 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccC---CCceEEEecCC--eeeec
Confidence 35689999999999987 444555554 222 223444 46778999999999 69999999966 88999
Q ss_pred CCCCCHHHHHHHHhccCCCceEeecccchh--hhccCCCcEEEEEeeC
Q 019115 248 RHQFTRLAIANFVTHTKHPLVVTLTIHNAQ--FVFQDPRKQLWLFAPA 293 (346)
Q Consensus 248 ~g~~~~~~l~~fi~~~~~p~~~~lt~~~~~--~~~~~~~~~~~~f~~~ 293 (346)
.|.++.++|.+|..+.+-|++..++....+ .+-....|.+++|-..
T Consensus 116 RG~R~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtg 163 (468)
T KOG4277|consen 116 RGGREKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFVFFGTG 163 (468)
T ss_pred CCCccHHHHHHHHHhcccceeeecChhHHHHHHHhhccCceEEEEeCC
Confidence 999999999999999999999998864322 2222333666666644
No 192
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=6.9e-06 Score=69.54 Aligned_cols=112 Identities=23% Similarity=0.296 Sum_probs=87.9
Q ss_pred cCCCcEEcChhcHHHHHcC---CCcEEEEEecC----CChhHhhhhHHHHHHHHHccC--------CcEEEEEeCcccHh
Q 019115 54 YAKDVVSLNGKNFSEFMGK---NRNVMVMFYAN----WCYWSKKLAPEFAAAAKMLKG--------EADLVMVDAYLEKD 118 (346)
Q Consensus 54 ~~~~v~~l~~~~~~~~~~~---~~~~~v~F~a~----wC~~C~~~~p~~~~~~~~~~~--------~v~~~~v~~~~~~~ 118 (346)
++..|+.+|+++|.+.+.. +-.++|.|.|. .|.-|+.+..+++-++..+.. ++-|..||.++.++
T Consensus 38 s~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~ 117 (331)
T KOG2603|consen 38 SESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ 117 (331)
T ss_pred CCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH
Confidence 4568999999999998853 23578888884 699999999999999987643 67899999999999
Q ss_pred HHHHCCCCCCcEEEEEe--CCeee-----EEeeCCCCHHHHHHHHHHHcCCCce
Q 019115 119 LAKEYNILAYPTLYLFV--AGVRQ-----FQFFGERTRDVISAWVREKMTLGTY 165 (346)
Q Consensus 119 ~~~~~~i~~~Pt~~~~~--~g~~~-----~~~~g~~~~~~l~~~i~~~~~~~~~ 165 (346)
+-+.++++..|++++|. .|+.. ..++-...+|++.+|+++...-.+.
T Consensus 118 ~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v~ 171 (331)
T KOG2603|consen 118 VFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNVR 171 (331)
T ss_pred HHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhheee
Confidence 99999999999999996 33221 1122223489999999988754443
No 193
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.32 E-value=4e-06 Score=61.13 Aligned_cols=90 Identities=13% Similarity=0.251 Sum_probs=67.1
Q ss_pred eeccChhHHHHhhccCCeEEEEEecCCCCc---cHHHHHHHh-ccCC---ceeEEEe---cCHHHHhhcCCCCCCCCCeE
Q 019115 165 YSITTTDEAERILTVESKLVLGFLHDLEGM---ESEELAAAS-KLHS---DVNFYQT---TSADVAEFFHIHPKSKRPAL 234 (346)
Q Consensus 165 ~~i~s~~~~~~~~~~~~~~~v~f~~~~~~~---~~~~~~~~a-~~~~---~~~f~~~---~~~~~~~~~~v~~~~~~p~i 234 (346)
.++ +.+++++.+.+.. ++|.|+.+||.+ ..+.+.+++ ++.+ .+.|+.+ .+.++++.|++. ++|++
T Consensus 3 ~~l-~~~~f~~~~~~~~-~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~---~~Pt~ 77 (102)
T cd03005 3 LEL-TEDNFDHHIAEGN-HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVR---GYPTL 77 (102)
T ss_pred eEC-CHHHHHHHhhcCC-EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCC---cCCEE
Confidence 345 4467777776654 888999999987 344566665 3433 5667654 466899999998 59999
Q ss_pred EEEecCCCccccCCCCCCHHHHHHHH
Q 019115 235 IFLHLEAGKATPFRHQFTRLAIANFV 260 (346)
Q Consensus 235 ~~~~~~~~~~~~y~g~~~~~~l~~fi 260 (346)
++|+++. ....|.|..+.++|.+||
T Consensus 78 ~~~~~g~-~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 78 LLFKDGE-KVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EEEeCCC-eeeEeeCCCCHHHHHhhC
Confidence 9997664 567899999999999886
No 194
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.29 E-value=5.7e-06 Score=61.26 Aligned_cols=67 Identities=21% Similarity=0.346 Sum_probs=47.7
Q ss_pred cCCCcEEEEEec-------CCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccH-------hHHH--HCCCCCCcEEEEE
Q 019115 71 GKNRNVMVMFYA-------NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-------DLAK--EYNILAYPTLYLF 134 (346)
Q Consensus 71 ~~~~~~~v~F~a-------~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~-------~~~~--~~~i~~~Pt~~~~ 134 (346)
.++++++|.|++ +|||.|.+..|.+++.-....++..++.|.+.+.+ .+.. ++++.++||++-+
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~ 96 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRW 96 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEEC
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEE
Confidence 356899999997 49999999999999988876667888888764322 3333 5999999999988
Q ss_pred eCC
Q 019115 135 VAG 137 (346)
Q Consensus 135 ~~g 137 (346)
.++
T Consensus 97 ~~~ 99 (119)
T PF06110_consen 97 ETG 99 (119)
T ss_dssp TSS
T ss_pred CCC
Confidence 866
No 195
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.27 E-value=7.1e-06 Score=60.14 Aligned_cols=88 Identities=11% Similarity=0.104 Sum_probs=66.2
Q ss_pred hHHHHhhccCCeEEEEEecCCCCccHHHH------HHHh-ccCCceeEEEec-------CHHHHhhcCCCCCCCCCeEEE
Q 019115 171 DEAERILTVESKLVLGFLHDLEGMESEEL------AAAS-KLHSDVNFYQTT-------SADVAEFFHIHPKSKRPALIF 236 (346)
Q Consensus 171 ~~~~~~~~~~~~~~v~f~~~~~~~~~~~~------~~~a-~~~~~~~f~~~~-------~~~~~~~~~v~~~~~~p~i~~ 236 (346)
+++.+.+.+++.++|.|+.+||.+..... .+++ .+.+++.+..+. ...+++.++++ ++|++++
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~---~~Pti~~ 78 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVF---GPPTYLF 78 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCC---CCCEEEE
Confidence 46777788889999999999999854432 2333 344466666432 35788999998 5999999
Q ss_pred Eec-CCCccccCCCCCCHHHHHHHHh
Q 019115 237 LHL-EAGKATPFRHQFTRLAIANFVT 261 (346)
Q Consensus 237 ~~~-~~~~~~~y~g~~~~~~l~~fi~ 261 (346)
|++ ++.....+.|..+.++|.+||+
T Consensus 79 ~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 79 YGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred ECCCCCCCCcccccccCHHHHHHHhC
Confidence 997 4556788899999999998874
No 196
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.25 E-value=1.4e-05 Score=58.37 Aligned_cols=92 Identities=14% Similarity=0.192 Sum_probs=68.4
Q ss_pred eccChhHHHHhhccCCeEEEEEecCCCCc---cHHHHHHHh-ccCC-ceeEEEe--cCHHHHhhcCCCCCCCCCeEEEEe
Q 019115 166 SITTTDEAERILTVESKLVLGFLHDLEGM---ESEELAAAS-KLHS-DVNFYQT--TSADVAEFFHIHPKSKRPALIFLH 238 (346)
Q Consensus 166 ~i~s~~~~~~~~~~~~~~~v~f~~~~~~~---~~~~~~~~a-~~~~-~~~f~~~--~~~~~~~~~~v~~~~~~p~i~~~~ 238 (346)
++.+.++++.++.++.+++|.|+.+||.+ ..+.+..++ .+.+ .+.|... .+.++++.|+++ +.|++++|+
T Consensus 3 ~i~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~~v~---~~Pt~~~~~ 79 (102)
T cd02948 3 EINNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLKRYRGK---CEPTFLFYK 79 (102)
T ss_pred EccCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHcCCC---cCcEEEEEE
Confidence 46788999999988899999999999998 345566655 3433 3556643 366899999998 599999998
Q ss_pred cCCCccccCCCCCCHHHHHHHHhc
Q 019115 239 LEAGKATPFRHQFTRLAIANFVTH 262 (346)
Q Consensus 239 ~~~~~~~~y~g~~~~~~l~~fi~~ 262 (346)
++. ......|. +.+.+.+||.+
T Consensus 80 ~g~-~~~~~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 80 NGE-LVAVIRGA-NAPLLNKTITE 101 (102)
T ss_pred CCE-EEEEEecC-ChHHHHHHHhh
Confidence 653 33444554 77889888864
No 197
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=5e-06 Score=59.95 Aligned_cols=73 Identities=23% Similarity=0.370 Sum_probs=56.9
Q ss_pred hcHHHHH---cCCCcEEEEEec--------CCChhHhhhhHHHHHHHHHccCCcEEEEEeCccc-------HhHHHHCCC
Q 019115 64 KNFSEFM---GKNRNVMVMFYA--------NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-------KDLAKEYNI 125 (346)
Q Consensus 64 ~~~~~~~---~~~~~~~v~F~a--------~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~-------~~~~~~~~i 125 (346)
+.|++.+ .+++.++|+|++ +|||.|.+..|.+.+.-+....++.|+.|++.+- ..+....++
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~ 92 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGI 92 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCc
Confidence 4455444 456679999998 5999999999999999887777999999998542 345566677
Q ss_pred -CCCcEEEEEeC
Q 019115 126 -LAYPTLYLFVA 136 (346)
Q Consensus 126 -~~~Pt~~~~~~ 136 (346)
.++||+.=+.+
T Consensus 93 lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 93 LTAVPTLLRWKR 104 (128)
T ss_pred eeecceeeEEcC
Confidence 89999877764
No 198
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.23 E-value=1e-05 Score=60.05 Aligned_cols=80 Identities=14% Similarity=0.122 Sum_probs=61.8
Q ss_pred cCCeEEEEEecCCCCcc---HHHHHHHh-ccCC-ceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEecCCCccccCCCC
Q 019115 179 VESKLVLGFLHDLEGME---SEELAAAS-KLHS-DVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQ 250 (346)
Q Consensus 179 ~~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~-~~~f~~~---~~~~~~~~~~v~~~~~~p~i~~~~~~~~~~~~y~g~ 250 (346)
.+.+++|.|+.+||.+. .+.+.+++ ++.+ ++.|+.+ .+..+++.+++. ++|++++|+.+ .....+.|.
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~---~~Pt~~i~~~g-~~~~~~~G~ 98 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAH---SVPAIVGIING-QVTFYHDSS 98 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCc---cCCEEEEEECC-EEEEEecCC
Confidence 56889999999999984 45566666 4433 4666654 467899999998 59999999865 355566899
Q ss_pred CCHHHHHHHHhc
Q 019115 251 FTRLAIANFVTH 262 (346)
Q Consensus 251 ~~~~~l~~fi~~ 262 (346)
.+.+.|.+||.+
T Consensus 99 ~~~~~l~~~i~~ 110 (111)
T cd02963 99 FTKQHVVDFVRK 110 (111)
T ss_pred CCHHHHHHHHhc
Confidence 999999999975
No 199
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.22 E-value=2e-05 Score=58.29 Aligned_cols=101 Identities=13% Similarity=0.074 Sum_probs=81.2
Q ss_pred EEcChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHH---ccCCcEEEEEeCcccHhHHHHCCCCC--CcEEEE
Q 019115 59 VSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKM---LKGEADLVMVDAYLEKDLAKEYNILA--YPTLYL 133 (346)
Q Consensus 59 ~~l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~---~~~~v~~~~v~~~~~~~~~~~~~i~~--~Pt~~~ 133 (346)
.++|.++.......+.+..+.|+.+ ..-....+.+.++|++ +++++.|+.+|.++.....+.+|+.. .|.+.+
T Consensus 2 ~e~t~e~~~~~~~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i 79 (111)
T cd03072 2 REITFENAEELTEEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAI 79 (111)
T ss_pred cccccccHHHHhcCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEE
Confidence 4577888888888888887777722 2346778899999999 99999999999999888999999997 999999
Q ss_pred EeCCe-eeEE-eeCCCCHHHHHHHHHHHcC
Q 019115 134 FVAGV-RQFQ-FFGERTRDVISAWVREKMT 161 (346)
Q Consensus 134 ~~~g~-~~~~-~~g~~~~~~l~~~i~~~~~ 161 (346)
.+... .... +.+..+.+.|.+|+++.+.
T Consensus 80 ~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 80 DSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 88321 2233 5588999999999998764
No 200
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.22 E-value=1.2e-05 Score=66.99 Aligned_cols=96 Identities=14% Similarity=0.135 Sum_probs=71.8
Q ss_pred CceeccChhHHHHhhcc-----CCeEEEEEecCCCCc---cHHHHHHHh-ccCCceeEEE---ecCHHHHhhcCCCCCCC
Q 019115 163 GTYSITTTDEAERILTV-----ESKLVLGFLHDLEGM---ESEELAAAS-KLHSDVNFYQ---TTSADVAEFFHIHPKSK 230 (346)
Q Consensus 163 ~~~~i~s~~~~~~~~~~-----~~~~~v~f~~~~~~~---~~~~~~~~a-~~~~~~~f~~---~~~~~~~~~~~v~~~~~ 230 (346)
.+.++ +.+++++.+.. ..+++|.||.+||.+ ..+.+.+++ .+.+.+.|+. ..+.++++.|+++ +
T Consensus 31 ~Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~---~ 106 (224)
T PTZ00443 31 ALVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIK---G 106 (224)
T ss_pred CcEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCC---c
Confidence 45566 55677777643 468999999999998 445566766 5666677764 3577899999998 5
Q ss_pred CCeEEEEecCCCccccCCCCCCHHHHHHHHhcc
Q 019115 231 RPALIFLHLEAGKATPFRHQFTRLAIANFVTHT 263 (346)
Q Consensus 231 ~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~ 263 (346)
+|++++|+.+. ....+.|..+.++|.+|+..+
T Consensus 107 ~PTl~~f~~G~-~v~~~~G~~s~e~L~~fi~~~ 138 (224)
T PTZ00443 107 YPTLLLFDKGK-MYQYEGGDRSTEKLAAFALGD 138 (224)
T ss_pred CCEEEEEECCE-EEEeeCCCCCHHHHHHHHHHH
Confidence 99999999652 333446889999999999754
No 201
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.21 E-value=1.1e-05 Score=59.02 Aligned_cols=91 Identities=15% Similarity=0.239 Sum_probs=67.3
Q ss_pred eeccChhHHHHhhccCCeEEEEEecCCCCc---cHHHHHHHh-ccC--CceeEEE---ec--CHHHHhhcCCCCCCCCCe
Q 019115 165 YSITTTDEAERILTVESKLVLGFLHDLEGM---ESEELAAAS-KLH--SDVNFYQ---TT--SADVAEFFHIHPKSKRPA 233 (346)
Q Consensus 165 ~~i~s~~~~~~~~~~~~~~~v~f~~~~~~~---~~~~~~~~a-~~~--~~~~f~~---~~--~~~~~~~~~v~~~~~~p~ 233 (346)
..+ +..+++..+.+++.++|.|+.+||.+ ..+.+..++ .+. +.+.|+. .. +..+++.++++ ++|+
T Consensus 3 ~~l-~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~---~~Pt 78 (104)
T cd02997 3 VHL-TDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVK---GFPT 78 (104)
T ss_pred EEe-chHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCc---cccE
Confidence 445 34577888888889999999999987 333444554 333 4455654 23 67899999997 5999
Q ss_pred EEEEecCCCccccCCCCCCHHHHHHHH
Q 019115 234 LIFLHLEAGKATPFRHQFTRLAIANFV 260 (346)
Q Consensus 234 i~~~~~~~~~~~~y~g~~~~~~l~~fi 260 (346)
+++|+.+. ....|.|..+.+.+.+||
T Consensus 79 ~~~~~~g~-~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 79 FKYFENGK-FVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEEEeCCC-eeEEeCCCCCHHHHHhhC
Confidence 99998764 567899999999999885
No 202
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.20 E-value=1.7e-05 Score=57.21 Aligned_cols=88 Identities=18% Similarity=0.322 Sum_probs=71.7
Q ss_pred hcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCC-eeeEE
Q 019115 64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG-VRQFQ 142 (346)
Q Consensus 64 ~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g-~~~~~ 142 (346)
+.++..+..+++++|-|+.++|. .....|.++|+.+.+.+.|+.+. +.++++++++. -|++.+|+++ .....
T Consensus 8 ~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~~~~~~ 80 (97)
T cd02981 8 EELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVK-PGSVVLFKPFEEEPVE 80 (97)
T ss_pred HHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCC-CCceEEeCCcccCCcc
Confidence 44556677889999999999987 46778999999998789998887 56788888875 4999999853 45677
Q ss_pred eeCCCCHHHHHHHHHH
Q 019115 143 FFGERTRDVISAWVRE 158 (346)
Q Consensus 143 ~~g~~~~~~l~~~i~~ 158 (346)
|.|..+.+.|.+||..
T Consensus 81 y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 81 YDGEFTEESLVEFIKD 96 (97)
T ss_pred CCCCCCHHHHHHHHHh
Confidence 9999999999999964
No 203
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.19 E-value=1.3e-05 Score=54.32 Aligned_cols=67 Identities=13% Similarity=0.165 Sum_probs=46.6
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHC----CCCCCcEEEEEeCCeeeEEeeCCCCHHHH
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEY----NILAYPTLYLFVAGVRQFQFFGERTRDVI 152 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~----~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l 152 (346)
++.|+++||++|++..+.+.+. ++.+..+|++.++...+.+ ++.++|++++ +|+ ...| .+.+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g-~~~~~l 69 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HLSG-FRPDKL 69 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EEec-CCHHHH
Confidence 5789999999999988777652 5677778887766544443 6889999865 552 3333 455566
Q ss_pred HHH
Q 019115 153 SAW 155 (346)
Q Consensus 153 ~~~ 155 (346)
.++
T Consensus 70 ~~~ 72 (73)
T cd02976 70 RAL 72 (73)
T ss_pred Hhh
Confidence 554
No 204
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.16 E-value=2.1e-05 Score=72.32 Aligned_cols=97 Identities=11% Similarity=0.171 Sum_probs=72.2
Q ss_pred CCceeccChhHHHHhhc---cCCeEEEEEecCCCCc---cHHHHHHHh-ccCCc-eeEEEe---cC-HHHH-hhcCCCCC
Q 019115 162 LGTYSITTTDEAERILT---VESKLVLGFLHDLEGM---ESEELAAAS-KLHSD-VNFYQT---TS-ADVA-EFFHIHPK 228 (346)
Q Consensus 162 ~~~~~i~s~~~~~~~~~---~~~~~~v~f~~~~~~~---~~~~~~~~a-~~~~~-~~f~~~---~~-~~~~-~~~~v~~~ 228 (346)
..+.++ +.+++++.+. .++.++|.||.+||.+ ..+.|.+++ ++.+. +.|+.+ .+ ..++ +.|+|.
T Consensus 351 ~~Vv~L-~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~-- 427 (463)
T TIGR00424 351 NNVVSL-SRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLG-- 427 (463)
T ss_pred CCeEEC-CHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCC--
Confidence 345555 4467887774 6778999999999988 456677777 45443 667654 22 2344 689998
Q ss_pred CCCCeEEEEecCCCccccCC-CCCCHHHHHHHHhc
Q 019115 229 SKRPALIFLHLEAGKATPFR-HQFTRLAIANFVTH 262 (346)
Q Consensus 229 ~~~p~i~~~~~~~~~~~~y~-g~~~~~~l~~fi~~ 262 (346)
++|++++|+++...+..|. |.++.++|..||+.
T Consensus 428 -~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 428 -SFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred -ccceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 5999999999876778897 58999999999974
No 205
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.16 E-value=2.2e-05 Score=56.92 Aligned_cols=90 Identities=12% Similarity=0.248 Sum_probs=67.2
Q ss_pred hhHHHHhhcc-CCeEEEEEecCCCCc---cHHHHHHHh-ccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEecCC
Q 019115 170 TDEAERILTV-ESKLVLGFLHDLEGM---ESEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEA 241 (346)
Q Consensus 170 ~~~~~~~~~~-~~~~~v~f~~~~~~~---~~~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~v~~~~~~p~i~~~~~~~ 241 (346)
.+++.+.+.+ ...++|.|+.+||.. ..+.+.+++ ++.+++.|+.. .+..+++.|++. +.|++++|+.+
T Consensus 3 ~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~---~~P~~~~~~~g- 78 (101)
T TIGR01068 3 DANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIR---SIPTLLLFKNG- 78 (101)
T ss_pred HHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCC---cCCEEEEEeCC-
Confidence 4567666655 458899999999987 344556665 45556777764 567899999998 59999999765
Q ss_pred CccccCCCCCCHHHHHHHHhcc
Q 019115 242 GKATPFRHQFTRLAIANFVTHT 263 (346)
Q Consensus 242 ~~~~~y~g~~~~~~l~~fi~~~ 263 (346)
.....+.|..+.+++.+||+++
T Consensus 79 ~~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 79 KEVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred cEeeeecCCCCHHHHHHHHHhh
Confidence 3456677888889999999754
No 206
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.15 E-value=1.1e-05 Score=66.59 Aligned_cols=76 Identities=17% Similarity=0.274 Sum_probs=55.6
Q ss_pred CCcEEEEEecCCChhHhhhhHHHHHHHHHccCCc--EEEEEe--------------------------------------
Q 019115 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEA--DLVMVD-------------------------------------- 112 (346)
Q Consensus 73 ~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v--~~~~v~-------------------------------------- 112 (346)
++..++.|..+.|++|+++.+.+.+. .+++ .+..+.
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~----~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPN----ADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhc----cCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 57899999999999999999988761 2222 222221
Q ss_pred -----CcccHhHHHHCCCCCCcEEEEEeCCeeeEEeeCCCCHHHHHHHH
Q 019115 113 -----AYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156 (346)
Q Consensus 113 -----~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 156 (346)
++++..+++++||+++|+++ +.+|+. +.|..+.+.|.+++
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 11234678899999999997 778854 57888888887764
No 207
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.12 E-value=2e-05 Score=51.24 Aligned_cols=54 Identities=15% Similarity=0.245 Sum_probs=42.2
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhH----HHHCCCCCCcEEEEEeCCe
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL----AKEYNILAYPTLYLFVAGV 138 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~----~~~~~i~~~Pt~~~~~~g~ 138 (346)
++.|+.+||++|++....|++. ++.+-.+|++++++. .+..|..++|++++ +|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~ 58 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGK 58 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCE
Confidence 4789999999999998888432 588888898887543 33449999999976 774
No 208
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.12 E-value=2.3e-05 Score=57.01 Aligned_cols=78 Identities=21% Similarity=0.293 Sum_probs=66.8
Q ss_pred ChhcHHHHH--cCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCee
Q 019115 62 NGKNFSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR 139 (346)
Q Consensus 62 ~~~~~~~~~--~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 139 (346)
++...++.+ ...+.++|-|..+|-|.|.++...+.++++...+-..++-||+++-+++.+-|++...||+++|-+++.
T Consensus 10 s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kH 89 (142)
T KOG3414|consen 10 SGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKH 89 (142)
T ss_pred cHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCce
Confidence 345555555 356899999999999999999999999999998777788899999999999999999999998876643
No 209
>PTZ00051 thioredoxin; Provisional
Probab=98.12 E-value=2.2e-05 Score=56.80 Aligned_cols=89 Identities=17% Similarity=0.165 Sum_probs=66.5
Q ss_pred ceeccChhHHHHhhccCCeEEEEEecCCCCcc---HHHHHHHhccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEE
Q 019115 164 TYSITTTDEAERILTVESKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFL 237 (346)
Q Consensus 164 ~~~i~s~~~~~~~~~~~~~~~v~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~---~~~~~~~~~~v~~~~~~p~i~~~ 237 (346)
+.++.+.++++..+..+..+++.|+.+||.+. .+.+.+++....++.|..+ .+.++++.|++. +.|++++|
T Consensus 2 v~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~---~~Pt~~~~ 78 (98)
T PTZ00051 2 VHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENIT---SMPTFKVF 78 (98)
T ss_pred eEEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCc---eeeEEEEE
Confidence 56788999999999999999999999999883 3446666644456777654 456899999998 59999999
Q ss_pred ecCCCccccCCCCCCHHHHH
Q 019115 238 HLEAGKATPFRHQFTRLAIA 257 (346)
Q Consensus 238 ~~~~~~~~~y~g~~~~~~l~ 257 (346)
+.+. ....+.|. ..++|.
T Consensus 79 ~~g~-~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 79 KNGS-VVDTLLGA-NDEALK 96 (98)
T ss_pred eCCe-EEEEEeCC-CHHHhh
Confidence 8653 45566664 445554
No 210
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=5.2e-05 Score=58.86 Aligned_cols=112 Identities=13% Similarity=0.180 Sum_probs=80.3
Q ss_pred CCCCCCCCCcCCCcEEcChhcHHHHHcCCCcEEEEEe-cCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCc--------
Q 019115 45 NNNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY-------- 114 (346)
Q Consensus 45 ~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~v~F~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~-------- 114 (346)
..|..+|.+ .+..-+++.+......+++++++|| ..|++.|-.++-.|.....++++ +..++.|..|
T Consensus 5 ~~G~~aPdF---~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F 81 (157)
T COG1225 5 KVGDKAPDF---ELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKF 81 (157)
T ss_pred CCCCcCCCe---EeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHH
Confidence 345566655 4555556555545567889999999 68999999999999999999887 7888888754
Q ss_pred -------------ccHhHHHHCCCCC------------CcEEEEEe-CCeeeEEeeCC---CCHHHHHHHHHHH
Q 019115 115 -------------LEKDLAKEYNILA------------YPTLYLFV-AGVRQFQFFGE---RTRDVISAWVREK 159 (346)
Q Consensus 115 -------------~~~~~~~~~~i~~------------~Pt~~~~~-~g~~~~~~~g~---~~~~~l~~~i~~~ 159 (346)
.+.++++.||+.. -++.++++ +|++...+... ...++..+.+++.
T Consensus 82 ~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 82 AEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred HHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 4567889998743 46788887 78776666432 3455666666543
No 211
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.11 E-value=2.2e-05 Score=75.26 Aligned_cols=91 Identities=16% Similarity=0.257 Sum_probs=73.3
Q ss_pred cChhcHHHHHcCCCcEEEE-EecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCee
Q 019115 61 LNGKNFSEFMGKNRNVMVM-FYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR 139 (346)
Q Consensus 61 l~~~~~~~~~~~~~~~~v~-F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 139 (346)
|+.+..+++..=++++-|. |.+++|++|......+.+++.+.. ++..-.+|..+.++++++|+|.++|++++ ||+.
T Consensus 463 l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~ 539 (555)
T TIGR03143 463 LGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQ 539 (555)
T ss_pred CCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECcccHHHHHhCCceecCEEEE--CCEE
Confidence 4455454444335666554 579999999999999999998865 78899999999999999999999999987 7753
Q ss_pred eEEeeCCCCHHHHHHHH
Q 019115 140 QFQFFGERTRDVISAWV 156 (346)
Q Consensus 140 ~~~~~g~~~~~~l~~~i 156 (346)
.+.|..+.+++.+|+
T Consensus 540 --~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 540 --VYFGKKTIEEMLELI 554 (555)
T ss_pred --EEeeCCCHHHHHHhh
Confidence 366988999998876
No 212
>PLN02309 5'-adenylylsulfate reductase
Probab=98.11 E-value=2.6e-05 Score=71.69 Aligned_cols=96 Identities=9% Similarity=0.171 Sum_probs=72.8
Q ss_pred CceeccChhHHHHhh---ccCCeEEEEEecCCCCc---cHHHHHHHh-ccCC-ceeEEEe----cCHHHHh-hcCCCCCC
Q 019115 163 GTYSITTTDEAERIL---TVESKLVLGFLHDLEGM---ESEELAAAS-KLHS-DVNFYQT----TSADVAE-FFHIHPKS 229 (346)
Q Consensus 163 ~~~~i~s~~~~~~~~---~~~~~~~v~f~~~~~~~---~~~~~~~~a-~~~~-~~~f~~~----~~~~~~~-~~~v~~~~ 229 (346)
.+..+ +.+++++.+ +.+..++|.||.+||.+ ..+.|.+++ .+.+ ++.|+.+ .+.+++. .|+|.
T Consensus 346 ~Vv~L-t~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~--- 421 (457)
T PLN02309 346 NVVAL-SRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLG--- 421 (457)
T ss_pred CcEEC-CHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCc---
Confidence 45555 456777766 46788999999999988 456677777 4433 4777765 3356775 69998
Q ss_pred CCCeEEEEecCCCccccCCC-CCCHHHHHHHHhc
Q 019115 230 KRPALIFLHLEAGKATPFRH-QFTRLAIANFVTH 262 (346)
Q Consensus 230 ~~p~i~~~~~~~~~~~~y~g-~~~~~~l~~fi~~ 262 (346)
++|++++|+++...+..|.| .++.++|..||+.
T Consensus 422 ~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 422 SFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNS 455 (457)
T ss_pred eeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHH
Confidence 59999999988777889985 7999999999975
No 213
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.08 E-value=3.9e-05 Score=61.69 Aligned_cols=99 Identities=12% Similarity=0.131 Sum_probs=71.8
Q ss_pred CCceeccChhHHHHhhccC---CeEEEEEecCCCCc---cHHHHHHHhccCCceeEEEecCH--HHHhhcCCCCCCCCCe
Q 019115 162 LGTYSITTTDEAERILTVE---SKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQTTSA--DVAEFFHIHPKSKRPA 233 (346)
Q Consensus 162 ~~~~~i~s~~~~~~~~~~~---~~~~v~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~~~~--~~~~~~~v~~~~~~p~ 233 (346)
..+.++++.+++...+... ..++|.||.+||.+ ..+.+..+|.-...++|..+... .++..|++. ..|+
T Consensus 62 g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~~l~~~f~v~---~vPT 138 (175)
T cd02987 62 GKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASATGASDEFDTD---ALPA 138 (175)
T ss_pred CeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccchhhHHhCCCC---CCCE
Confidence 4567787767777776543 37888999999988 45667778855578899876443 589999998 5999
Q ss_pred EEEEecCCCc--cc----cCCCCCCHHHHHHHHhcc
Q 019115 234 LIFLHLEAGK--AT----PFRHQFTRLAIANFVTHT 263 (346)
Q Consensus 234 i~~~~~~~~~--~~----~y~g~~~~~~l~~fi~~~ 263 (346)
+++|+.+... .. ....+++.++|..|+.++
T Consensus 139 lllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 139 LLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred EEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 9999987421 11 112357889999988754
No 214
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.08 E-value=0.00012 Score=55.68 Aligned_cols=108 Identities=18% Similarity=0.217 Sum_probs=81.0
Q ss_pred CcEEcChhcHH-HHHcCCCcEEEEEecC--CChh-H-hhhhHHHHHHHHHccCC-cEEEEEeCcccHhHHHHCCCC--CC
Q 019115 57 DVVSLNGKNFS-EFMGKNRNVMVMFYAN--WCYW-S-KKLAPEFAAAAKMLKGE-ADLVMVDAYLEKDLAKEYNIL--AY 128 (346)
Q Consensus 57 ~v~~l~~~~~~-~~~~~~~~~~v~F~a~--wC~~-C-~~~~p~~~~~~~~~~~~-v~~~~v~~~~~~~~~~~~~i~--~~ 128 (346)
.+.+|+.++.- ..-.+++..+|-|.-. .|.. + ......+.++|++++++ +.|+-+|.++...+.+.||+. ++
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~ 82 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGY 82 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCC
Confidence 56677766553 3334456667777542 2322 3 35678899999999998 999999999999999999995 49
Q ss_pred cEEEEEeCCe-eeEEeeCCCCHHHHHHHHHHHcCCCc
Q 019115 129 PTLYLFVAGV-RQFQFFGERTRDVISAWVREKMTLGT 164 (346)
Q Consensus 129 Pt~~~~~~g~-~~~~~~g~~~~~~l~~~i~~~~~~~~ 164 (346)
|++++++..+ ....+.|..+.+.+.+|+++.+...+
T Consensus 83 P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 83 PAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred CEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence 9999998432 22237799999999999999986654
No 215
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.07 E-value=2.1e-05 Score=57.93 Aligned_cols=69 Identities=16% Similarity=0.280 Sum_probs=53.9
Q ss_pred hhHHHHhhc--cCCeEEEEEecCCCCc---cHHHHHHHh-ccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEecC
Q 019115 170 TDEAERILT--VESKLVLGFLHDLEGM---ESEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLE 240 (346)
Q Consensus 170 ~~~~~~~~~--~~~~~~v~f~~~~~~~---~~~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~v~~~~~~p~i~~~~~~ 240 (346)
.++++..+. .+.+++|.|+.+||++ ..+.+.+++ ++.+.+.|+.+ .++++++.|++. +.|++++|+++
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~---~iPTf~~fk~G 78 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELY---DPPTVMFFFRN 78 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCC---CCCEEEEEECC
Confidence 456666665 4668999999999998 456777877 55556677654 678999999999 59999999987
Q ss_pred C
Q 019115 241 A 241 (346)
Q Consensus 241 ~ 241 (346)
.
T Consensus 79 ~ 79 (114)
T cd02954 79 K 79 (114)
T ss_pred E
Confidence 4
No 216
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.06 E-value=3.6e-05 Score=57.32 Aligned_cols=93 Identities=14% Similarity=0.182 Sum_probs=64.6
Q ss_pred CceeccChhHHHHhhccC---CeEEEEEecCCCCc---cHHHHHHHhccCCceeEEEecCH--HHHhhcCCCCCCCCCeE
Q 019115 163 GTYSITTTDEAERILTVE---SKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQTTSA--DVAEFFHIHPKSKRPAL 234 (346)
Q Consensus 163 ~~~~i~s~~~~~~~~~~~---~~~~v~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~~~~--~~~~~~~v~~~~~~p~i 234 (346)
.+.++++ +++.+.+.+. ..++|.|+.+||++ ..+.+.+++.-..++.|+.+... .+++.+++. +.|++
T Consensus 5 ~v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~~l~~~~~i~---~~Pt~ 80 (113)
T cd02957 5 EVREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKAFLVNYLDIK---VLPTL 80 (113)
T ss_pred eEEEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhhHHHHhcCCC---cCCEE
Confidence 4567766 7777777554 78889999999988 45667777754566777765222 899999998 59999
Q ss_pred EEEecCCCccccCCC-------CCCHHHHHHHH
Q 019115 235 IFLHLEAGKATPFRH-------QFTRLAIANFV 260 (346)
Q Consensus 235 ~~~~~~~~~~~~y~g-------~~~~~~l~~fi 260 (346)
++|+.+. ....+.| +++.+.|..|+
T Consensus 81 ~~f~~G~-~v~~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 81 LVYKNGE-LIDNIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred EEEECCE-EEEEEecHHHhCCCCCCHHHHHHHh
Confidence 9999874 2333333 24556666664
No 217
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=98.05 E-value=4e-05 Score=65.44 Aligned_cols=82 Identities=15% Similarity=0.200 Sum_probs=60.1
Q ss_pred CCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeC----------------c----------------------
Q 019115 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA----------------Y---------------------- 114 (346)
Q Consensus 73 ~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~----------------~---------------------- 114 (346)
.+.+++.|..+.||+|+++.+.+.++.+. +++.+..+.. .
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 35688999999999999999988776553 2333332211 0
Q ss_pred ------------ccHhHHHHCCCCCCcEEEEEe-CCeeeEEeeCCCCHHHHHHHHH
Q 019115 115 ------------LEKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVR 157 (346)
Q Consensus 115 ------------~~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~ 157 (346)
++..+.+++||+++|++++-+ +| .+....|..+.++|.+.+.
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHhC
Confidence 122467789999999999887 56 5667889999999888764
No 218
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.03 E-value=6.1e-05 Score=55.63 Aligned_cols=99 Identities=13% Similarity=0.124 Sum_probs=71.1
Q ss_pred EcChhcHHHHHcCCCcEEEEE---ecCCChhHhhhhHHHHHHHHHcc-CCcEEEEEeCcccHhHHHHCCCCC----CcEE
Q 019115 60 SLNGKNFSEFMGKNRNVMVMF---YANWCYWSKKLAPEFAAAAKMLK-GEADLVMVDAYLEKDLAKEYNILA----YPTL 131 (346)
Q Consensus 60 ~l~~~~~~~~~~~~~~~~v~F---~a~wC~~C~~~~p~~~~~~~~~~-~~v~~~~v~~~~~~~~~~~~~i~~----~Pt~ 131 (346)
++|.++..... ..+..++++ |+..-..-....+.+.++|++++ +++.|+.+|.++.....+.||+.. .|++
T Consensus 3 ~~~~en~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~ 81 (111)
T cd03073 3 HRTKDNRAQFT-KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVV 81 (111)
T ss_pred eeccchHHHhc-cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEE
Confidence 45566666553 333333332 22233445678899999999999 699999999998888999999985 9999
Q ss_pred EEEeCCeeeEEeeCCC-CHHHHHHHHHHH
Q 019115 132 YLFVAGVRQFQFFGER-TRDVISAWVREK 159 (346)
Q Consensus 132 ~~~~~g~~~~~~~g~~-~~~~l~~~i~~~ 159 (346)
.+++.........+.. +.+.|.+|+++.
T Consensus 82 ~i~~~~~~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 82 AIRTAKGKKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred EEEeCCCCccCCCcccCCHHHHHHHHHHh
Confidence 9988322223346777 999999999864
No 219
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.02 E-value=4.7e-05 Score=55.65 Aligned_cols=85 Identities=14% Similarity=0.049 Sum_probs=64.9
Q ss_pred ChhHHHHhhccCCeEEEEEecCC--CCc---cHHHHHHHh-ccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEec
Q 019115 169 TTDEAERILTVESKLVLGFLHDL--EGM---ESEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHL 239 (346)
Q Consensus 169 s~~~~~~~~~~~~~~~v~f~~~~--~~~---~~~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~v~~~~~~p~i~~~~~ 239 (346)
+.+.+++.+..+..+++.|+.+| |.+ ..+.+.+++ ++.+.+.|+.+ .++.++..|+|. +.||+++|++
T Consensus 16 ~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~---sIPTli~fkd 92 (111)
T cd02965 16 DAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVL---RTPALLFFRD 92 (111)
T ss_pred ccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCC---cCCEEEEEEC
Confidence 55677788888889999999996 665 566677777 45566777653 667999999999 5999999998
Q ss_pred CCCccccCCCCCCHHHHH
Q 019115 240 EAGKATPFRHQFTRLAIA 257 (346)
Q Consensus 240 ~~~~~~~y~g~~~~~~l~ 257 (346)
+. ....+.|..+.+++.
T Consensus 93 Gk-~v~~~~G~~~~~e~~ 109 (111)
T cd02965 93 GR-YVGVLAGIRDWDEYV 109 (111)
T ss_pred CE-EEEEEeCccCHHHHh
Confidence 73 455667877776664
No 220
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.02 E-value=5.3e-05 Score=55.48 Aligned_cols=86 Identities=19% Similarity=0.225 Sum_probs=63.0
Q ss_pred hHHHHhhccCCeEEEEEecCCCCc---cHHHHHHHh-ccC---CceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEecC
Q 019115 171 DEAERILTVESKLVLGFLHDLEGM---ESEELAAAS-KLH---SDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLE 240 (346)
Q Consensus 171 ~~~~~~~~~~~~~~v~f~~~~~~~---~~~~~~~~a-~~~---~~~~f~~~---~~~~~~~~~~v~~~~~~p~i~~~~~~ 240 (346)
+.+++. .+...++|.|+.+||.+ ..+.+.+++ .+. ..+.++.. ...++++.+++. ++|++++|+.+
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~---~~Pt~~l~~~~ 82 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVR---GYPTIKLLKGD 82 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCc---cccEEEEEcCC
Confidence 455554 34668999999999987 344555555 332 23656543 467899999998 59999999644
Q ss_pred CCccccCCCCCCHHHHHHHHhc
Q 019115 241 AGKATPFRHQFTRLAIANFVTH 262 (346)
Q Consensus 241 ~~~~~~y~g~~~~~~l~~fi~~ 262 (346)
....|.|..+.++|.+|+++
T Consensus 83 --~~~~~~G~~~~~~l~~~~~~ 102 (104)
T cd03000 83 --LAYNYRGPRTKDDIVEFANR 102 (104)
T ss_pred --CceeecCCCCHHHHHHHHHh
Confidence 55678999999999999975
No 221
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.02 E-value=5.7e-05 Score=55.20 Aligned_cols=88 Identities=17% Similarity=0.143 Sum_probs=64.0
Q ss_pred ChhHHHHhhcc--CCeEEEEEecCCCCc---cHHHHHHHhccCCceeEEEe---cC---HHHHhhcCCCCCCCCCeEEEE
Q 019115 169 TTDEAERILTV--ESKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQT---TS---ADVAEFFHIHPKSKRPALIFL 237 (346)
Q Consensus 169 s~~~~~~~~~~--~~~~~v~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~---~~---~~~~~~~~v~~~~~~p~i~~~ 237 (346)
+.+++++.+.+ ++.++|.|+.+||++ ..+.+.++++-..++.|+.+ .+ .++++.++++ ++|++++|
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~---~~Pt~~~~ 78 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKII---EVPHFLFY 78 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCC---cCCEEEEE
Confidence 56777777754 688999999999998 44566666643367777765 22 3789999998 59999999
Q ss_pred ecCCCccccCCCCCCHHHHHHHHh
Q 019115 238 HLEAGKATPFRHQFTRLAIANFVT 261 (346)
Q Consensus 238 ~~~~~~~~~y~g~~~~~~l~~fi~ 261 (346)
+++. ....+.|. ..++|.+-+.
T Consensus 79 ~~G~-~v~~~~G~-~~~~l~~~~~ 100 (103)
T cd02985 79 KDGE-KIHEEEGI-GPDELIGDVL 100 (103)
T ss_pred eCCe-EEEEEeCC-CHHHHHHHHH
Confidence 7663 56677785 5667766654
No 222
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.02 E-value=4.8e-05 Score=59.85 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=28.8
Q ss_pred CCCcEEEEEecCCChhHhhhhHHHHHHHHHccC
Q 019115 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG 104 (346)
Q Consensus 72 ~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~ 104 (346)
+.+++++.|+.++||+|+++.|.+.++..++++
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~ 36 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD 36 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC
Confidence 457899999999999999999999998877653
No 223
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.01 E-value=5.3e-05 Score=53.28 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=53.8
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccH----hHHHHCCC--CCCcEEEEEeCCeeeEEeeCCCCHH
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK----DLAKEYNI--LAYPTLYLFVAGVRQFQFFGERTRD 150 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~----~~~~~~~i--~~~Pt~~~~~~g~~~~~~~g~~~~~ 150 (346)
++.|..+||++|.+....++++..+.. ++.+..+|++.+. ++.+..|- .++|++++ +|+. .| ..+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~----ig--G~~ 72 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA-DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKH----VG--GCT 72 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC-CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEE----ec--CHH
Confidence 577889999999999999988765543 5778888887533 56666664 78999954 6643 23 236
Q ss_pred HHHHHHHHHc
Q 019115 151 VISAWVREKM 160 (346)
Q Consensus 151 ~l~~~i~~~~ 160 (346)
++.+++.+..
T Consensus 73 dl~~~~~~~~ 82 (86)
T TIGR02183 73 DFEQLVKENF 82 (86)
T ss_pred HHHHHHHhcc
Confidence 7777777654
No 224
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.98 E-value=9e-05 Score=60.45 Aligned_cols=99 Identities=12% Similarity=0.140 Sum_probs=69.5
Q ss_pred CCceeccChhHHHHhhccC--CeEEEEEecCCCCc---cHHHHHHHhccCCceeEEEecCHHHHhhcCCCCCCCCCeEEE
Q 019115 162 LGTYSITTTDEAERILTVE--SKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIF 236 (346)
Q Consensus 162 ~~~~~i~s~~~~~~~~~~~--~~~~v~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~~~~~~~~~~~v~~~~~~p~i~~ 236 (346)
..+.+++..+......... ..++|.||.+||.+ ..+.+..+|.-+..++|..+.....+..|++. ..|++++
T Consensus 82 G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~~~~~~i~---~lPTlli 158 (192)
T cd02988 82 GEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQCIPNYPDK---NLPTILV 158 (192)
T ss_pred CeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHhHhhCCCC---CCCEEEE
Confidence 4667775544444444433 47888899999988 55678888855578999988777778899998 5999999
Q ss_pred EecCCCc-----cccCCC-CCCHHHHHHHHhcc
Q 019115 237 LHLEAGK-----ATPFRH-QFTRLAIANFVTHT 263 (346)
Q Consensus 237 ~~~~~~~-----~~~y~g-~~~~~~l~~fi~~~ 263 (346)
|++++.. ...+.| .++.++|..++.++
T Consensus 159 yk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~ 191 (192)
T cd02988 159 YRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQV 191 (192)
T ss_pred EECCEEEEEEeCchhhCCCCCCHHHHHHHHHhc
Confidence 9987511 112223 57788888887643
No 225
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.95 E-value=6e-05 Score=58.53 Aligned_cols=90 Identities=16% Similarity=0.181 Sum_probs=65.4
Q ss_pred hhHHHHhhccCCeEEEEEecCCCCc---cHHHHHHHh-ccCCceeEEEe--c---CHHHHhhcCCCCCCCCCeEEEEecC
Q 019115 170 TDEAERILTVESKLVLGFLHDLEGM---ESEELAAAS-KLHSDVNFYQT--T---SADVAEFFHIHPKSKRPALIFLHLE 240 (346)
Q Consensus 170 ~~~~~~~~~~~~~~~v~f~~~~~~~---~~~~~~~~a-~~~~~~~f~~~--~---~~~~~~~~~v~~~~~~p~i~~~~~~ 240 (346)
..+++..+..+++++|.|+.+||.+ ..+.+.+++ .+.+++.|..+ . ..++++.|++. ++|++++|..+
T Consensus 10 ~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~---~iPt~v~~~~~ 86 (142)
T cd02950 10 STPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVD---GIPHFVFLDRE 86 (142)
T ss_pred cCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCC---CCCEEEEECCC
Confidence 3456666777889999999999988 445555655 44455666543 1 24688999998 59999999755
Q ss_pred CCccccCCCCCCHHHHHHHHhc
Q 019115 241 AGKATPFRHQFTRLAIANFVTH 262 (346)
Q Consensus 241 ~~~~~~y~g~~~~~~l~~fi~~ 262 (346)
+.....+.|..+.++|.++|..
T Consensus 87 G~~v~~~~G~~~~~~l~~~l~~ 108 (142)
T cd02950 87 GNEEGQSIGLQPKQVLAQNLDA 108 (142)
T ss_pred CCEEEEEeCCCCHHHHHHHHHH
Confidence 5556677888888888888764
No 226
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.94 E-value=0.00018 Score=51.74 Aligned_cols=91 Identities=14% Similarity=0.219 Sum_probs=64.0
Q ss_pred ChhcHHHHHcC--CCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccH----hHHHHCCCCC-CcEEEEE
Q 019115 62 NGKNFSEFMGK--NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK----DLAKEYNILA-YPTLYLF 134 (346)
Q Consensus 62 ~~~~~~~~~~~--~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~----~~~~~~~i~~-~Pt~~~~ 134 (346)
+.+++++++.. .++++|.=.++.|+-.......|++..+...+++.++-+|+-+++ .++.+|||.. -|.++++
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili 85 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILI 85 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEE
Confidence 45777877755 788888888999999999999999999887766999999998765 4678899974 8999999
Q ss_pred eCCeeeEEee-CCCCHHHH
Q 019115 135 VAGVRQFQFF-GERTRDVI 152 (346)
Q Consensus 135 ~~g~~~~~~~-g~~~~~~l 152 (346)
++|+.++.-. +..+.+.|
T Consensus 86 ~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 86 KNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp ETTEEEEEEEGGG-SHHHH
T ss_pred ECCEEEEECccccCCHHhc
Confidence 9997765433 34555544
No 227
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.93 E-value=7.8e-05 Score=71.02 Aligned_cols=95 Identities=19% Similarity=0.188 Sum_probs=76.1
Q ss_pred cChhcHHHHHcCCCc-EEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCee
Q 019115 61 LNGKNFSEFMGKNRN-VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR 139 (346)
Q Consensus 61 l~~~~~~~~~~~~~~-~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 139 (346)
|+++..+.+..=+++ -+-.|.+++|++|......+.+++.... +|..-.+|..+.++++++|++.++|++++ +|+
T Consensus 103 l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~- 178 (517)
T PRK15317 103 LDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTMIDGALFQDEVEARNIMAVPTVFL--NGE- 178 (517)
T ss_pred CCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEEEEchhCHhHHHhcCCcccCEEEE--CCc-
Confidence 455555544333444 4778999999999999999999998755 79999999999999999999999999976 664
Q ss_pred eEEeeCCCCHHHHHHHHHHHc
Q 019115 140 QFQFFGERTRDVISAWVREKM 160 (346)
Q Consensus 140 ~~~~~g~~~~~~l~~~i~~~~ 160 (346)
..+.|..+.+++.+.+.+..
T Consensus 179 -~~~~g~~~~~~~~~~~~~~~ 198 (517)
T PRK15317 179 -EFGQGRMTLEEILAKLDTGA 198 (517)
T ss_pred -EEEecCCCHHHHHHHHhccc
Confidence 34779999998888887643
No 228
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.92 E-value=7.5e-05 Score=51.58 Aligned_cols=58 Identities=14% Similarity=0.234 Sum_probs=43.6
Q ss_pred CCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCccc---HhHHHHCCCCCCcEEEEEeCCe
Q 019115 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE---KDLAKEYNILAYPTLYLFVAGV 138 (346)
Q Consensus 73 ~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~---~~~~~~~~i~~~Pt~~~~~~g~ 138 (346)
.+.-++.|..+||++|++....|++. ++.+-.+|++++ .++.+..|...+|++++ +|+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~ 66 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGK 66 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCE
Confidence 34457789999999999998888642 567777888765 34555678899999964 774
No 229
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.91 E-value=0.00014 Score=57.87 Aligned_cols=82 Identities=20% Similarity=0.333 Sum_probs=63.7
Q ss_pred CCCcEEEEEecCCChhHhhhhHHHHHHHHHc--cCCcEEEEEeCcc----------------------------------
Q 019115 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKML--KGEADLVMVDAYL---------------------------------- 115 (346)
Q Consensus 72 ~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~--~~~v~~~~v~~~~---------------------------------- 115 (346)
..+++++.|+...|++|+++.+.+.++.+++ ++++.+.-++.-.
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 4578999999999999999999999999998 5677777765410
Q ss_pred ----------------------------------cHhHHHHCCCCCCcEEEEEeCCeeeEEeeCCCCHHHHHHHHHH
Q 019115 116 ----------------------------------EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158 (346)
Q Consensus 116 ----------------------------------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 158 (346)
....+++.||.++||+++ ||+. +.|..+.+++.+.|++
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~---~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKY---VVGPYTIEELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCE---EETTTSHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEE---eCCCCCHHHHHHHHcC
Confidence 012346779999999988 8854 5889999999998864
No 230
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=97.88 E-value=6.9e-05 Score=52.53 Aligned_cols=83 Identities=11% Similarity=0.159 Sum_probs=62.5
Q ss_pred ceeccChhHHHHhhccCCeEEEEEecCCCCccHHHHHHHh-ccCCceeEEEecCHHHHhhcCCCCCCCCCeEEEEecC-C
Q 019115 164 TYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLE-A 241 (346)
Q Consensus 164 ~~~i~s~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~~~~~~~v~~~~~~p~i~~~~~~-~ 241 (346)
+.++.+.+++.. ++.++..+|+||.+..++.+..|..+| .+++++.|+........ ...-. -+.+++|++. .
T Consensus 1 Ikef~~~~eL~~-id~~kr~iIgYF~~~~~~eY~~f~kvA~~lr~dC~F~v~~G~~~~-~~~~~----~~~~i~frp~~~ 74 (91)
T cd03070 1 IKEFRNLDELNN-VDRSKRNIIGYFESKDSDEYDNFRKVANILRDDCSFLVGFGDVTK-PERPP----GDNIIYFPPGHN 74 (91)
T ss_pred CceecCHHHHHh-hCcCCceEEEEEcCCCChhHHHHHHHHHHHhhcCeEEEEeccccc-cccCC----CCCeEEECCCCC
Confidence 456778888887 777888999999998999999999988 78999999876654432 11222 2556678876 5
Q ss_pred CccccCCCCCC
Q 019115 242 GKATPFRHQFT 252 (346)
Q Consensus 242 ~~~~~y~g~~~ 252 (346)
.....|.|+++
T Consensus 75 ~~~~~y~G~~t 85 (91)
T cd03070 75 APDMVYLGSLT 85 (91)
T ss_pred CCceEEccCCC
Confidence 56688999875
No 231
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=97.85 E-value=0.00021 Score=54.84 Aligned_cols=95 Identities=13% Similarity=0.135 Sum_probs=65.0
Q ss_pred ceeccChhHHHHhhc--cCCeEEEEEecCCCCc---cHHHHHHHh-ccCCceeEEEe---cCHHHHhhcCCCCCCCCCeE
Q 019115 164 TYSITTTDEAERILT--VESKLVLGFLHDLEGM---ESEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPAL 234 (346)
Q Consensus 164 ~~~i~s~~~~~~~~~--~~~~~~v~f~~~~~~~---~~~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~v~~~~~~p~i 234 (346)
+..+.|.+++++.+. .+.+++|-|+++||++ ..+.+.++| ++.+...|+.+ .+++++..|+++. .|++
T Consensus 5 l~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~---~~t~ 81 (142)
T PLN00410 5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYD---PCTV 81 (142)
T ss_pred HhhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccC---CCcE
Confidence 345678899988884 5678899999999998 556777777 45555665653 6789999999983 5666
Q ss_pred E-EEecCCCccccCCC--------CCCHHHHHHHHh
Q 019115 235 I-FLHLEAGKATPFRH--------QFTRLAIANFVT 261 (346)
Q Consensus 235 ~-~~~~~~~~~~~y~g--------~~~~~~l~~fi~ 261 (346)
+ +|+.+...-....| ..+.++|.+-++
T Consensus 82 ~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~ 117 (142)
T PLN00410 82 MFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVE 117 (142)
T ss_pred EEEEECCeEEEEEecccccccccccCCHHHHHHHHH
Confidence 6 78766323333445 234455555544
No 232
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00016 Score=61.48 Aligned_cols=99 Identities=11% Similarity=0.171 Sum_probs=76.1
Q ss_pred ceeccChhHHHHhhcc--CCeEEEEEecCCCCccH---HHHHHHh-ccCCceeEEEe---cCHHHHhhcCCCCCCCCCeE
Q 019115 164 TYSITTTDEAERILTV--ESKLVLGFLHDLEGMES---EELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPAL 234 (346)
Q Consensus 164 ~~~i~s~~~~~~~~~~--~~~~~v~f~~~~~~~~~---~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~v~~~~~~p~i 234 (346)
++++++...-+..+.+ ..+++|.|..+||+++. +.+.+++ .+.+++.++.+ .++.++..||++ +.|++
T Consensus 25 I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiq---sIPtV 101 (304)
T COG3118 25 IKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQ---SIPTV 101 (304)
T ss_pred ceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcC---cCCeE
Confidence 6677554444444433 44788899999999944 4455554 78899988875 567999999999 59999
Q ss_pred EEEecCCCccccCCCCCCHHHHHHHHhccCCC
Q 019115 235 IFLHLEAGKATPFRHQFTRLAIANFVTHTKHP 266 (346)
Q Consensus 235 ~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~p 266 (346)
+.|+++. ...-|.|....+.|.+|+.++--+
T Consensus 102 ~af~dGq-pVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 102 YAFKDGQ-PVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EEeeCCc-CccccCCCCcHHHHHHHHHHhcCh
Confidence 9999874 567799998899999999977655
No 233
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.83 E-value=0.00017 Score=51.90 Aligned_cols=87 Identities=18% Similarity=0.254 Sum_probs=62.3
Q ss_pred ChhHHHHhhccC--CeEEEEEecCCCCc---cHHHHHHHh-ccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEec
Q 019115 169 TTDEAERILTVE--SKLVLGFLHDLEGM---ESEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHL 239 (346)
Q Consensus 169 s~~~~~~~~~~~--~~~~v~f~~~~~~~---~~~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~v~~~~~~p~i~~~~~ 239 (346)
|.+++++.+.+. ..++|.|+.+||.+ ..+.+.+++ ++...+.|..+ ...++++.|+++ +.|++++|+.
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~---~~Pt~~~~~~ 77 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEIT---AVPTFVFFRN 77 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCc---cccEEEEEEC
Confidence 356777777665 88999999999987 445556665 34667777764 456789999998 5999999986
Q ss_pred CCCccccCCCCCCHHHHHHHH
Q 019115 240 EAGKATPFRHQFTRLAIANFV 260 (346)
Q Consensus 240 ~~~~~~~y~g~~~~~~l~~fi 260 (346)
+ .....+.|. ..++|.+.|
T Consensus 78 g-~~~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 78 G-TIVDRVSGA-DPKELAKKV 96 (97)
T ss_pred C-EEEEEEeCC-CHHHHHHhh
Confidence 5 234445554 567777665
No 234
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.83 E-value=0.00019 Score=51.92 Aligned_cols=94 Identities=18% Similarity=0.218 Sum_probs=70.7
Q ss_pred CcEEcChhcHHHHHcCCCcEEEEEecCCChhHhhhhH---HHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEE
Q 019115 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAP---EFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYL 133 (346)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p---~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~ 133 (346)
....++.++++..+..+... |.|++..|..|.+... .+-++.+.+.+.+..+.|+-..+..+..+||+..+|++++
T Consensus 10 g~~~vd~~~ld~~l~~~~~~-vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf 88 (107)
T PF07449_consen 10 GWPRVDADTLDAFLAAPGDA-VLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVF 88 (107)
T ss_dssp TEEEE-CCCHHHHHHCCSCE-EEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEE
T ss_pred CCeeechhhHHHHHhCCCcE-EEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEE
Confidence 45678889999998776554 5566666666555444 5667777777778888888778889999999999999999
Q ss_pred EeCCeeeEEeeCCCCHHH
Q 019115 134 FVAGVRQFQFFGERTRDV 151 (346)
Q Consensus 134 ~~~g~~~~~~~g~~~~~~ 151 (346)
+++|+.+....|-++-++
T Consensus 89 ~R~g~~lG~i~gi~dW~d 106 (107)
T PF07449_consen 89 FRDGRYLGAIEGIRDWAD 106 (107)
T ss_dssp EETTEEEEEEESSSTHHH
T ss_pred EECCEEEEEecCeecccc
Confidence 999988888888777543
No 235
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.82 E-value=0.00015 Score=51.24 Aligned_cols=86 Identities=15% Similarity=0.259 Sum_probs=63.7
Q ss_pred HHHHhhccCCeEEEEEecCCCCc---cHHHHHHHhccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEecCCCccc
Q 019115 172 EAERILTVESKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAGKAT 245 (346)
Q Consensus 172 ~~~~~~~~~~~~~v~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~---~~~~~~~~~~v~~~~~~p~i~~~~~~~~~~~ 245 (346)
+++..+..+..+++.|+.++|.. ..+.+.++++..+++.|+.+ .+.++++.+++. +.|++++++.+. ...
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~---~~P~~~~~~~g~-~~~ 77 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVR---SIPTFLFFKNGK-EVD 77 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcc---cccEEEEEECCE-EEE
Confidence 35566666688899999999987 44445555433577777754 457899999998 589999998764 566
Q ss_pred cCCCCCCHHHHHHHHh
Q 019115 246 PFRHQFTRLAIANFVT 261 (346)
Q Consensus 246 ~y~g~~~~~~l~~fi~ 261 (346)
.+.|..+.++|.+||+
T Consensus 78 ~~~g~~~~~~l~~~i~ 93 (93)
T cd02947 78 RVVGADPKEELEEFLE 93 (93)
T ss_pred EEecCCCHHHHHHHhC
Confidence 6778778899999874
No 236
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.80 E-value=0.00021 Score=49.99 Aligned_cols=95 Identities=19% Similarity=0.299 Sum_probs=77.5
Q ss_pred ChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcc--cHhHHHHCCCC----CCc-EEEEE
Q 019115 62 NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL--EKDLAKEYNIL----AYP-TLYLF 134 (346)
Q Consensus 62 ~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~i~----~~P-t~~~~ 134 (346)
+-++|.+++...+.|+|.|..+--.. ......+.++|+..++.-.++-|||.+ ...+|+++.|. .-| ++..|
T Consensus 8 d~KdfKKLLRTr~NVLvLy~ks~k~a-~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHY 86 (112)
T cd03067 8 DHKDFKKLLRTRNNVLVLYSKSAKSA-EALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHY 86 (112)
T ss_pred chHHHHHHHhhcCcEEEEEecchhhH-HHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhcc
Confidence 34788888888888999888775333 344568899999999988999999987 67899999998 445 46667
Q ss_pred eCCeeeEEeeCCCCHHHHHHHHH
Q 019115 135 VAGVRQFQFFGERTRDVISAWVR 157 (346)
Q Consensus 135 ~~g~~~~~~~g~~~~~~l~~~i~ 157 (346)
.+|.-...|+-..+...|..|+.
T Consensus 87 KdG~fHkdYdR~~t~kSmv~Flr 109 (112)
T cd03067 87 KDGDFHTEYNRQLTFKSMVAFLR 109 (112)
T ss_pred cCCCccccccchhhHHHHHHHhh
Confidence 89988889999999999999986
No 237
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.79 E-value=0.00027 Score=50.95 Aligned_cols=83 Identities=12% Similarity=0.136 Sum_probs=62.1
Q ss_pred HhhccCCeEEEEEecCCCCcc---HHHHHHHh-ccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEecCCCccccC
Q 019115 175 RILTVESKLVLGFLHDLEGME---SEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAGKATPF 247 (346)
Q Consensus 175 ~~~~~~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~v~~~~~~p~i~~~~~~~~~~~~y 247 (346)
.+...++++++.|+.+||... .+.+.+++ .+.+++.+..+ .++++++.+++. +.|++++|+++ .....+
T Consensus 8 ~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~---~vPt~~i~~~g-~~v~~~ 83 (97)
T cd02949 8 LYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIM---GTPTVQFFKDK-ELVKEI 83 (97)
T ss_pred HHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCe---eccEEEEEECC-eEEEEE
Confidence 445667888999999999883 34455554 45556666654 467899999998 59999999864 456777
Q ss_pred CCCCCHHHHHHHHh
Q 019115 248 RHQFTRLAIANFVT 261 (346)
Q Consensus 248 ~g~~~~~~l~~fi~ 261 (346)
.|..+.+++.+|++
T Consensus 84 ~g~~~~~~~~~~l~ 97 (97)
T cd02949 84 SGVKMKSEYREFIE 97 (97)
T ss_pred eCCccHHHHHHhhC
Confidence 88888899999874
No 238
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.78 E-value=7.9e-05 Score=51.84 Aligned_cols=57 Identities=18% Similarity=0.310 Sum_probs=42.7
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccH-----hHHHHCCCCCCcEEEEEeCCee
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-----DLAKEYNILAYPTLYLFVAGVR 139 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~-----~~~~~~~i~~~Pt~~~~~~g~~ 139 (346)
++.|+++|||+|++..+.++++.. ...+..++.+++. .+.+..|..++|++ |.+|+.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~ 63 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKF 63 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEE
Confidence 477999999999999999988755 4567777776542 35566789999997 447743
No 239
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.78 E-value=0.00013 Score=49.38 Aligned_cols=66 Identities=11% Similarity=0.098 Sum_probs=47.9
Q ss_pred EEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHC---CCCCCcEEEEEeCCeeeEEeeCCCCHHHHHH
Q 019115 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEY---NILAYPTLYLFVAGVRQFQFFGERTRDVISA 154 (346)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~---~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~ 154 (346)
..|..++|++|++....|++. ++.+-.+|++++++....+ |..++|++++ +|+ .+.|..+.+.|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~---~~~~G~~~~~~~~ 70 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD---LSWSGFRPDKLKA 70 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC---cEEeccCHHHHHh
Confidence 467889999999998888642 6888889998887665554 8889999754 552 2345566666654
No 240
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=97.77 E-value=0.00078 Score=50.01 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=62.2
Q ss_pred ChhcHHHHH--cCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcE-EEEEeCCe
Q 019115 62 NGKNFSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPT-LYLFVAGV 138 (346)
Q Consensus 62 ~~~~~~~~~--~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt-~~~~~~g~ 138 (346)
++...++++ ..++.++|-|..+|-+.|.++...+.+++++.++-..++.||.++-+++.+.|.+. -|. +++|-+|+
T Consensus 7 s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnk 85 (133)
T PF02966_consen 7 SGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNK 85 (133)
T ss_dssp SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTE
T ss_pred ccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecCe
Confidence 345566655 56789999999999999999999999999999987889999999999999999999 665 55554665
Q ss_pred e
Q 019115 139 R 139 (346)
Q Consensus 139 ~ 139 (346)
.
T Consensus 86 h 86 (133)
T PF02966_consen 86 H 86 (133)
T ss_dssp E
T ss_pred E
Confidence 3
No 241
>PHA03050 glutaredoxin; Provisional
Probab=97.72 E-value=0.00022 Score=52.30 Aligned_cols=68 Identities=10% Similarity=0.125 Sum_probs=44.4
Q ss_pred HHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcc---c----HhHHHHCCCCCCcEEEEEeCCe
Q 019115 66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL---E----KDLAKEYNILAYPTLYLFVAGV 138 (346)
Q Consensus 66 ~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~---~----~~~~~~~~i~~~Pt~~~~~~g~ 138 (346)
.++.+.+++ ++.|..+|||+|++....|++..-+.+ .+-.+|+++ . .++.+.-|-+.+|++++ +|+
T Consensus 6 v~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~ 78 (108)
T PHA03050 6 VQQRLANNK--VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKT 78 (108)
T ss_pred HHHHhccCC--EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCE
Confidence 334554443 667999999999999888877633221 344555554 2 24556668889999855 775
Q ss_pred ee
Q 019115 139 RQ 140 (346)
Q Consensus 139 ~~ 140 (346)
.+
T Consensus 79 ~i 80 (108)
T PHA03050 79 SI 80 (108)
T ss_pred EE
Confidence 43
No 242
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.65 E-value=0.00037 Score=56.36 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=33.1
Q ss_pred CCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEE
Q 019115 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLV 109 (346)
Q Consensus 72 ~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~ 109 (346)
.+++.++.|+...||+|+.+.+.+.++.+++.+++.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence 56899999999999999999999999999886655554
No 243
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=97.65 E-value=0.001 Score=55.23 Aligned_cols=39 Identities=10% Similarity=0.257 Sum_probs=31.4
Q ss_pred CCcEEEEEecCCChhHhhhhHHH---HHHHHHccCCcEEEEE
Q 019115 73 NRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMV 111 (346)
Q Consensus 73 ~~~~~v~F~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v 111 (346)
+++.+|.|+.-.||||.++.|.+ ..+.+.+.+++.+..+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~ 78 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKY 78 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEe
Confidence 46789999999999999999876 7778887766555543
No 244
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.65 E-value=0.00058 Score=50.74 Aligned_cols=83 Identities=14% Similarity=0.129 Sum_probs=59.6
Q ss_pred hccCCeEEEEEecCCCCccH---HHHHHHhccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEecCCC-ccccCCC
Q 019115 177 LTVESKLVLGFLHDLEGMES---EELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAG-KATPFRH 249 (346)
Q Consensus 177 ~~~~~~~~v~f~~~~~~~~~---~~~~~~a~~~~~~~f~~~---~~~~~~~~~~v~~~~~~p~i~~~~~~~~-~~~~y~g 249 (346)
+.+....++.|+.+||++.. +.+.+++...+.+.|..+ .++++++.|++. +.|++++|+.++. ....|.|
T Consensus 19 l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~---~vPt~~i~~~g~~~~~~~~~G 95 (113)
T cd02975 19 MKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVE---RVPTTIFLQDGGKDGGIRYYG 95 (113)
T ss_pred hCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCC---cCCEEEEEeCCeecceEEEEe
Confidence 44455566667889998844 556666644466766653 677899999998 5899999987542 2346888
Q ss_pred CCCHHHHHHHHhc
Q 019115 250 QFTRLAIANFVTH 262 (346)
Q Consensus 250 ~~~~~~l~~fi~~ 262 (346)
-....++.+||..
T Consensus 96 ~~~~~el~~~i~~ 108 (113)
T cd02975 96 LPAGYEFASLIED 108 (113)
T ss_pred cCchHHHHHHHHH
Confidence 7778889998863
No 245
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.64 E-value=0.00021 Score=47.92 Aligned_cols=56 Identities=14% Similarity=0.271 Sum_probs=41.2
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhH----HHHCCCCCCcEEEEEeCCeee
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL----AKEYNILAYPTLYLFVAGVRQ 140 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~----~~~~~i~~~Pt~~~~~~g~~~ 140 (346)
++.|+++||++|++..+.+.+. ++.+..+|++.+++. .+..+...+|+++ .+|+.+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~------~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~~i 61 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL------GIEFEEIDILEDGELREELKELSGWPTVPQIF--INGEFI 61 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEE
Confidence 4678999999999999888865 366778888776543 3445777889874 477443
No 246
>PTZ00062 glutaredoxin; Provisional
Probab=97.64 E-value=0.00096 Score=54.77 Aligned_cols=90 Identities=13% Similarity=0.129 Sum_probs=67.7
Q ss_pred ccChhHHHHhhccC-CeEEEEEecCCCCc---cHHHHHHHhccCCceeEEEecCHHHHhhcCCCCCCCCCeEEEEecCCC
Q 019115 167 ITTTDEAERILTVE-SKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAG 242 (346)
Q Consensus 167 i~s~~~~~~~~~~~-~~~~v~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~~~~~~~~~~~v~~~~~~p~i~~~~~~~~ 242 (346)
..+.+++.+++.++ ...++.|..+||.+ ..+.+.++++-.+++.|..+... +++. +.|++++|+++.
T Consensus 3 ~~~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-----~~V~---~vPtfv~~~~g~- 73 (204)
T PTZ00062 3 FIKKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-----DANN---EYGVFEFYQNSQ- 73 (204)
T ss_pred CCCHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-----cCcc---cceEEEEEECCE-
Confidence 35678888888754 66777778999988 56667777766688999988654 8888 599999999875
Q ss_pred ccccCCCCCCHHHHHHHHhccCCC
Q 019115 243 KATPFRHQFTRLAIANFVTHTKHP 266 (346)
Q Consensus 243 ~~~~y~g~~~~~~l~~fi~~~~~p 266 (346)
....+.|. +..+|..+++++.-+
T Consensus 74 ~i~r~~G~-~~~~~~~~~~~~~~~ 96 (204)
T PTZ00062 74 LINSLEGC-NTSTLVSFIRGWAQK 96 (204)
T ss_pred EEeeeeCC-CHHHHHHHHHHHcCC
Confidence 45566665 578888888776543
No 247
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.61 E-value=0.00056 Score=65.16 Aligned_cols=95 Identities=15% Similarity=0.140 Sum_probs=75.5
Q ss_pred EcChhcHHHHHcCCCc-EEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCe
Q 019115 60 SLNGKNFSEFMGKNRN-VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV 138 (346)
Q Consensus 60 ~l~~~~~~~~~~~~~~-~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 138 (346)
.|+++..+.+..=+++ -+-.|.++.|++|......+.+++.... +|..-.+|..+.++++.+|++.++|++++ +|+
T Consensus 103 ~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~ 179 (515)
T TIGR03140 103 KLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMIDGALFQDEVEALGIQGVPAVFL--NGE 179 (515)
T ss_pred CCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEEEchhCHHHHHhcCCcccCEEEE--CCc
Confidence 3455555544432344 5778999999999999999999988865 78888899999999999999999999976 664
Q ss_pred eeEEeeCCCCHHHHHHHHHHH
Q 019115 139 RQFQFFGERTRDVISAWVREK 159 (346)
Q Consensus 139 ~~~~~~g~~~~~~l~~~i~~~ 159 (346)
..+.|..+.+++.+.+.+.
T Consensus 180 --~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 180 --EFHNGRMDLAELLEKLEET 198 (515)
T ss_pred --EEEecCCCHHHHHHHHhhc
Confidence 3477999988887777655
No 248
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.60 E-value=0.00071 Score=45.70 Aligned_cols=66 Identities=11% Similarity=0.211 Sum_probs=45.7
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHh---HHHHCCCCCCcEEEEEeCCeeeEEeeCCCCHHHHH
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD---LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVIS 153 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~---~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 153 (346)
++.|..+||++|.+....+++. ++.+-.+|++++.. +.+..|...+|.++ -+|+.+ | ..+++.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if--i~g~~i----g--g~~~l~ 68 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQVF--IDGELI----G--GSDDLE 68 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeEE--ECCEEE----e--CHHHHH
Confidence 5778899999999998777742 56677777776542 33445889999984 477432 3 246666
Q ss_pred HHH
Q 019115 154 AWV 156 (346)
Q Consensus 154 ~~i 156 (346)
+|+
T Consensus 69 ~~l 71 (72)
T cd03029 69 KYF 71 (72)
T ss_pred HHh
Confidence 664
No 249
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.60 E-value=0.00019 Score=49.56 Aligned_cols=54 Identities=7% Similarity=0.267 Sum_probs=39.6
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHH----HHCCCCCCcEEEEEeCCe
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA----KEYNILAYPTLYLFVAGV 138 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~----~~~~i~~~Pt~~~~~~g~ 138 (346)
++.|+.+||++|.+....+++. ++.+-.+|++.+++.. +..|..++|++++ +|+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~ 58 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDV 58 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCE
Confidence 3568899999999999888753 4666667777665443 4457889999844 774
No 250
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00081 Score=49.06 Aligned_cols=79 Identities=14% Similarity=0.253 Sum_probs=58.9
Q ss_pred CCeEEEEEecCCCCc---cHHHHHHHhccCCceeEEEe-c--CHHHHhhcCCCCCCCCCeEEEEecCCCccccCCCCCCH
Q 019115 180 ESKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQT-T--SADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTR 253 (346)
Q Consensus 180 ~~~~~v~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~-~--~~~~~~~~~v~~~~~~p~i~~~~~~~~~~~~y~g~~~~ 253 (346)
+...++.|+++||++ ..+.+.++|.-+.++.|..+ . +.++++.+++. ..|++++|+.++ ....+-|. +.
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~---~~PTf~f~k~g~-~~~~~vGa-~~ 95 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVK---AMPTFVFYKGGE-EVDEVVGA-NK 95 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCce---EeeEEEEEECCE-EEEEEecC-CH
Confidence 577888899999999 67778888854555888753 3 48899999998 489999998875 44555554 34
Q ss_pred HHHHHHHhcc
Q 019115 254 LAIANFVTHT 263 (346)
Q Consensus 254 ~~l~~fi~~~ 263 (346)
+++.+.|.++
T Consensus 96 ~~l~~~i~~~ 105 (106)
T KOG0907|consen 96 AELEKKIAKH 105 (106)
T ss_pred HHHHHHHHhc
Confidence 4777766543
No 251
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.56 E-value=0.0012 Score=45.74 Aligned_cols=72 Identities=11% Similarity=0.151 Sum_probs=52.2
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHH---HHCCCCCCcEEEEEeCCeeeEEeeCCCCHHHHH
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA---KEYNILAYPTLYLFVAGVRQFQFFGERTRDVIS 153 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~---~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 153 (346)
+..|..+||++|++....|++ .++.|-.+|++++++.. +..|...+|++++ ++. ..+..+.+.|.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~----~~~Gf~~~~l~ 70 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL----SWSGFRPDMIN 70 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE----EEecCCHHHHH
Confidence 567889999999998888754 26888899998877643 3457788999865 442 23456778888
Q ss_pred HHHHHHc
Q 019115 154 AWVREKM 160 (346)
Q Consensus 154 ~~i~~~~ 160 (346)
+.+....
T Consensus 71 ~~~~~~~ 77 (81)
T PRK10329 71 RLHPAPH 77 (81)
T ss_pred HHHHhhh
Confidence 7776543
No 252
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.55 E-value=0.00042 Score=47.18 Aligned_cols=55 Identities=11% Similarity=0.200 Sum_probs=40.3
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHH----HCCCC-CCcEEEEEeCCee
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAK----EYNIL-AYPTLYLFVAGVR 139 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~----~~~i~-~~Pt~~~~~~g~~ 139 (346)
++.|..+||++|.+....|++. ++.+-.+|++.+++..+ ..|.. ++|++++ +|+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~~ 61 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDVH 61 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCEE
Confidence 5678899999999998888752 57777888887654433 35766 8998754 7743
No 253
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.52 E-value=0.00029 Score=50.92 Aligned_cols=55 Identities=16% Similarity=0.203 Sum_probs=37.5
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHh-------HHHHCCCCCCcEEEEEeCCee
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD-------LAKEYNILAYPTLYLFVAGVR 139 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~-------~~~~~~i~~~Pt~~~~~~g~~ 139 (346)
++.|..+|||+|++....|++. ++.+..+|++++++ +.+..|...+|+++ -+|+.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf--i~g~~ 71 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF--VGGKL 71 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE--ECCEE
Confidence 5678999999999988877654 34455566655432 33344778999984 47743
No 254
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.51 E-value=0.013 Score=55.99 Aligned_cols=169 Identities=11% Similarity=0.007 Sum_probs=115.1
Q ss_pred CcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCee-eEEeeCCCCHHHH
Q 019115 74 RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR-QFQFFGERTRDVI 152 (346)
Q Consensus 74 ~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~-~~~~~g~~~~~~l 152 (346)
+++-+.++.+.|..|..+...++++++... ++.+-..+.. ...|++.+.++|+. -.+|.|-..-.++
T Consensus 19 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~-~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P~g~Ef 86 (517)
T PRK15317 19 RPIELVASLDDSEKSAELKELLEEIASLSD-KITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIPMGHEF 86 (517)
T ss_pred CCEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEccCC-----------CCCCEEEEEcCCccceEEEEecCccHHH
Confidence 455455555589999999999999988654 6665432211 34799999886643 4789999998999
Q ss_pred HHHHHHHc--CCCceeccChhHHHHhhc-cCCeEEEEEecCCCCccHHHHH---HHhccCCceeEEE---ecCHHHHhhc
Q 019115 153 SAWVREKM--TLGTYSITTTDEAERILT-VESKLVLGFLHDLEGMESEELA---AASKLHSDVNFYQ---TTSADVAEFF 223 (346)
Q Consensus 153 ~~~i~~~~--~~~~~~i~s~~~~~~~~~-~~~~~~v~f~~~~~~~~~~~~~---~~a~~~~~~~f~~---~~~~~~~~~~ 223 (346)
..||...+ +.+-..+ +++..+.+.. +.+..+..|..+.|........ .++...+++.+-. ...+++++.|
T Consensus 87 ~s~i~~i~~~~~~~~~l-~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~ 165 (517)
T PRK15317 87 TSLVLALLQVGGHPPKL-DQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEAR 165 (517)
T ss_pred HHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhc
Confidence 99988775 2333344 5555555544 3466677889999988665443 3444445565443 4678999999
Q ss_pred CCCCCCCCCeEEEEecCCCccccCCCCCCHHHHHHHHhcc
Q 019115 224 HIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHT 263 (346)
Q Consensus 224 ~v~~~~~~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~ 263 (346)
++. +.|++++ + ....+.|..+.+++.+.+...
T Consensus 166 ~v~---~VP~~~i--~---~~~~~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 166 NIM---AVPTVFL--N---GEEFGQGRMTLEEILAKLDTG 197 (517)
T ss_pred CCc---ccCEEEE--C---CcEEEecCCCHHHHHHHHhcc
Confidence 998 5899875 1 224577888888888887653
No 255
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=97.50 E-value=0.00087 Score=52.88 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=33.2
Q ss_pred CCCcEEEEEe-cCCChhHhhh-hHHHHHHHHHccC-Cc-EEEEEeCc
Q 019115 72 KNRNVMVMFY-ANWCYWSKKL-APEFAAAAKMLKG-EA-DLVMVDAY 114 (346)
Q Consensus 72 ~~~~~~v~F~-a~wC~~C~~~-~p~~~~~~~~~~~-~v-~~~~v~~~ 114 (346)
.++++++.|| +.||+.|..+ .+.|.+.++++.+ ++ .++.|.++
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D 74 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN 74 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC
Confidence 4455555555 8999999999 9999999999875 66 47777765
No 256
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.49 E-value=0.0034 Score=46.08 Aligned_cols=95 Identities=11% Similarity=0.176 Sum_probs=65.8
Q ss_pred ChhHHHHhhccCCeEEEEEecCC-CCccHHHHHHHh----ccCCceeEEEe--------cCHHHHhhcCCCCCCCCCeEE
Q 019115 169 TTDEAERILTVESKLVLGFLHDL-EGMESEELAAAS----KLHSDVNFYQT--------TSADVAEFFHIHPKSKRPALI 235 (346)
Q Consensus 169 s~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~a----~~~~~~~f~~~--------~~~~~~~~~~v~~~~~~p~i~ 235 (346)
++-.+++.+...+.++|-|=..- -+...+.|..+| ...+++-++.+ .|.+++++|++.. ..+|.+.
T Consensus 10 D~~tFdKvi~kf~~~LVKFD~ayPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k-e~fPv~~ 88 (126)
T PF07912_consen 10 DELTFDKVIPKFKYVLVKFDVAYPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK-EDFPVIY 88 (126)
T ss_dssp STTHHHHHGGGSSEEEEEEEESS--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC-CC-SEEE
T ss_pred cceehhheeccCceEEEEEeccCCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc-ccCCEEE
Confidence 44578899988888888763211 122344454443 45667777754 5789999999964 2589999
Q ss_pred EEecCCCccccC--CCCCCHHHHHHHHhccC
Q 019115 236 FLHLEAGKATPF--RHQFTRLAIANFVTHTK 264 (346)
Q Consensus 236 ~~~~~~~~~~~y--~g~~~~~~l~~fi~~~~ 264 (346)
+|+.+.+.+..| +|+++.++|.+|++.|+
T Consensus 89 LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t 119 (126)
T PF07912_consen 89 LFVGDKEEPVRYPFDGDVTADNLQRFVKSNT 119 (126)
T ss_dssp EEESSTTSEEEE-TCS-S-HHHHHHHHHHTS
T ss_pred EecCCCCCCccCCccCCccHHHHHHHHHhCC
Confidence 999777889988 89999999999999875
No 257
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.49 E-value=0.00051 Score=46.55 Aligned_cols=54 Identities=7% Similarity=0.091 Sum_probs=41.5
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHh----HHHHCCCCCCcEEEEEeCCe
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD----LAKEYNILAYPTLYLFVAGV 138 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~----~~~~~~i~~~Pt~~~~~~g~ 138 (346)
++.|..+||++|++....|++. ++.+-.+|++++++ +.+..+-..+|++++ +|+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~ 60 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK------GLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEK 60 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCE
Confidence 5678899999999998888752 57788888887664 555567788999854 664
No 258
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.48 E-value=0.0005 Score=47.67 Aligned_cols=78 Identities=15% Similarity=0.183 Sum_probs=60.1
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeC--CeeeEEeeCCCCHHHHHH
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA--GVRQFQFFGERTRDVISA 154 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~--g~~~~~~~g~~~~~~l~~ 154 (346)
++.|..+.|+-|......+.++.... .+.+-.||+++++++..+|+. .+|.+.+-.. ........+..+.+.+.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~--~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~ 78 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF--PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRA 78 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS--TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc--CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHH
Confidence 67889999999999999998865543 589999999999999999995 6999766331 111345568889999999
Q ss_pred HHH
Q 019115 155 WVR 157 (346)
Q Consensus 155 ~i~ 157 (346)
|++
T Consensus 79 ~L~ 81 (81)
T PF05768_consen 79 WLE 81 (81)
T ss_dssp HHH
T ss_pred HhC
Confidence 885
No 259
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.45 E-value=0.0016 Score=48.46 Aligned_cols=90 Identities=10% Similarity=0.053 Sum_probs=60.0
Q ss_pred CceeccChhHHHHhhcc-CCeEEEEEecCCCCc---cHHHHHHHhc-cC---CceeEEEec-----CHHHHhhcCCCCCC
Q 019115 163 GTYSITTTDEAERILTV-ESKLVLGFLHDLEGM---ESEELAAASK-LH---SDVNFYQTT-----SADVAEFFHIHPKS 229 (346)
Q Consensus 163 ~~~~i~s~~~~~~~~~~-~~~~~v~f~~~~~~~---~~~~~~~~a~-~~---~~~~f~~~~-----~~~~~~~~~v~~~~ 229 (346)
++.++ +.+++++.+.+ +..++|.|+.+||.+ ..+.+.+++. +. +.+.|+... +.++++.++++
T Consensus 2 ~v~~l-~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~--- 77 (114)
T cd02992 2 PVIVL-DAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVT--- 77 (114)
T ss_pred CeEEC-CHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCC---
Confidence 34555 45677777654 468999999999987 4455666663 32 346676542 45789999998
Q ss_pred CCCeEEEEecCCC---ccccCCCC-CCHHHH
Q 019115 230 KRPALIFLHLEAG---KATPFRHQ-FTRLAI 256 (346)
Q Consensus 230 ~~p~i~~~~~~~~---~~~~y~g~-~~~~~l 256 (346)
++|++++|+++.. ....|+|. ...+++
T Consensus 78 ~~Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~ 108 (114)
T cd02992 78 GYPTLRYFPPFSKEATDGLKQEGPERDVNEL 108 (114)
T ss_pred CCCEEEEECCCCccCCCCCcccCCccCHHHH
Confidence 5999999987742 22456665 444444
No 260
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.43 E-value=0.0016 Score=50.99 Aligned_cols=78 Identities=17% Similarity=0.196 Sum_probs=55.0
Q ss_pred CceeccChhHHHHhhcc--CCeEEEEEecCCCCc---cHHHHHHHhc-cC-CceeEEEe---cCHHHHhhcCCCC---CC
Q 019115 163 GTYSITTTDEAERILTV--ESKLVLGFLHDLEGM---ESEELAAASK-LH-SDVNFYQT---TSADVAEFFHIHP---KS 229 (346)
Q Consensus 163 ~~~~i~s~~~~~~~~~~--~~~~~v~f~~~~~~~---~~~~~~~~a~-~~-~~~~f~~~---~~~~~~~~~~v~~---~~ 229 (346)
.+.++ +.+++++.+.. ...++|.|+.+||.+ ..+.+.++++ +. .++.|+.+ .++++++.|+++. ..
T Consensus 29 ~v~~l-~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~ 107 (152)
T cd02962 29 HIKYF-TPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSK 107 (152)
T ss_pred ccEEc-CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcC
Confidence 34455 44677777643 468899999999988 4566777763 43 34777765 5678999999973 12
Q ss_pred CCCeEEEEecCC
Q 019115 230 KRPALIFLHLEA 241 (346)
Q Consensus 230 ~~p~i~~~~~~~ 241 (346)
++|++++|+.+.
T Consensus 108 ~~PT~ilf~~Gk 119 (152)
T cd02962 108 QLPTIILFQGGK 119 (152)
T ss_pred CCCEEEEEECCE
Confidence 389999999764
No 261
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.40 E-value=0.0011 Score=47.68 Aligned_cols=65 Identities=18% Similarity=0.291 Sum_probs=43.9
Q ss_pred cHHHHHcCCCcEEEEEe----cCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhH----HHHCCCCCCcEEEEEeC
Q 019115 65 NFSEFMGKNRNVMVMFY----ANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL----AKEYNILAYPTLYLFVA 136 (346)
Q Consensus 65 ~~~~~~~~~~~~~v~F~----a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~----~~~~~i~~~Pt~~~~~~ 136 (346)
..++.+.++ +++|.-. +||||+|++....|.+. ++.+..+|++++++. .+.-|-..+|++++ +
T Consensus 4 ~v~~~i~~~-~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi--~ 74 (97)
T TIGR00365 4 RIKEQIKEN-PVVLYMKGTPQFPQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV--K 74 (97)
T ss_pred HHHHHhccC-CEEEEEccCCCCCCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE--C
Confidence 344555554 4555443 38999999998888764 466778888776544 34456778999854 7
Q ss_pred Ce
Q 019115 137 GV 138 (346)
Q Consensus 137 g~ 138 (346)
|+
T Consensus 75 g~ 76 (97)
T TIGR00365 75 GE 76 (97)
T ss_pred CE
Confidence 74
No 262
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.39 E-value=0.0017 Score=48.96 Aligned_cols=91 Identities=11% Similarity=0.020 Sum_probs=60.9
Q ss_pred ChhHHHHhhccCCeEEEEEecCCCCc---cHHHHHHHhccCCceeEEEec-C-------------HHHHhhcCCCC-CCC
Q 019115 169 TTDEAERILTVESKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQTT-S-------------ADVAEFFHIHP-KSK 230 (346)
Q Consensus 169 s~~~~~~~~~~~~~~~v~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~~-~-------------~~~~~~~~v~~-~~~ 230 (346)
+.+++.+.+.+++..+|.|+.+||.+ ..+.+.++++- .+..++.+. + .++.+.+++.. ..+
T Consensus 12 t~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 90 (122)
T TIGR01295 12 TVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMG 90 (122)
T ss_pred CHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCC
Confidence 66788888888888999999999987 55556666643 334444321 1 14446666541 135
Q ss_pred CCeEEEEecCCCccccCCC-CCCHHHHHHHHh
Q 019115 231 RPALIFLHLEAGKATPFRH-QFTRLAIANFVT 261 (346)
Q Consensus 231 ~p~i~~~~~~~~~~~~y~g-~~~~~~l~~fi~ 261 (346)
.|++++|+++.. .....| ..+.++|.+|+.
T Consensus 91 ~PT~v~~k~Gk~-v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 91 TPTFVHITDGKQ-VSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCEEEEEeCCeE-EEEEeCCCCCHHHHHHHhh
Confidence 899999998853 334556 556899998864
No 263
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=97.37 E-value=0.0015 Score=49.54 Aligned_cols=90 Identities=11% Similarity=0.099 Sum_probs=64.0
Q ss_pred hhHHHHhhccC-CeEEEEEecCCCCccHHHHH------HHh-ccCCceeEEEe---c-------------CHHHHhhcCC
Q 019115 170 TDEAERILTVE-SKLVLGFLHDLEGMESEELA------AAS-KLHSDVNFYQT---T-------------SADVAEFFHI 225 (346)
Q Consensus 170 ~~~~~~~~~~~-~~~~v~f~~~~~~~~~~~~~------~~a-~~~~~~~f~~~---~-------------~~~~~~~~~v 225 (346)
.++++..+.+. ++++|.|+.+||.+....-. .+. .+.+++.+..+ . ..+++..|++
T Consensus 3 ~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v 82 (125)
T cd02951 3 YEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV 82 (125)
T ss_pred HHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCC
Confidence 45677778888 89999999999988543321 222 22344544332 1 2578999999
Q ss_pred CCCCCCCeEEEEecC-CCccccCCCCCCHHHHHHHHhc
Q 019115 226 HPKSKRPALIFLHLE-AGKATPFRHQFTRLAIANFVTH 262 (346)
Q Consensus 226 ~~~~~~p~i~~~~~~-~~~~~~y~g~~~~~~l~~fi~~ 262 (346)
. +.|+++++.++ +.....+.|..+.+.+..+|+.
T Consensus 83 ~---~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~ 117 (125)
T cd02951 83 R---FTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEY 117 (125)
T ss_pred c---cccEEEEEcCCCCceeEEecCCCCHHHHHHHHHH
Confidence 8 59999999987 4566678888888888888864
No 264
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.35 E-value=0.0028 Score=52.49 Aligned_cols=67 Identities=21% Similarity=0.226 Sum_probs=53.8
Q ss_pred cCCCCCCCCCCcCCCcEEcChhc---HHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEe
Q 019115 43 NLNNNHTWPLLYAKDVVSLNGKN---FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD 112 (346)
Q Consensus 43 ~~~~~~~~~~~~~~~v~~l~~~~---~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~ 112 (346)
....|..+|+. .+..+++++ +-+..+.++|.+++|.+-.||+=..-.+.++++++++.+.+.|..|-
T Consensus 72 ~a~~G~~APns---~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VY 141 (237)
T PF00837_consen 72 EAKLGGPAPNS---PVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVY 141 (237)
T ss_pred ceeCCCCCCCC---ceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhh
Confidence 44566666655 899998887 33555789999999999999999999999999999999755565553
No 265
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.002 Score=53.17 Aligned_cols=95 Identities=13% Similarity=0.169 Sum_probs=69.3
Q ss_pred CceeccChhHHHHhhcc--CCeEEEEEecCCCCc---cHHHHHHHhccCCceeEEEe---cCHHHHhhcCCCCCCCCCeE
Q 019115 163 GTYSITTTDEAERILTV--ESKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPAL 234 (346)
Q Consensus 163 ~~~~i~s~~~~~~~~~~--~~~~~v~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~---~~~~~~~~~~v~~~~~~p~i 234 (346)
+++.+.+..+++.-+.. .+.++|-|+..||++ ..+.|..++..+....|..+ .....+..+|++. .|+.
T Consensus 2 ~Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~a---mPTF 78 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNA---MPTF 78 (288)
T ss_pred CeEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCccc---CceE
Confidence 46778888888877754 458888999999999 66778888855566667654 4556788899984 8999
Q ss_pred EEEecCCCccccCCCCCCHHHHHHHHhc
Q 019115 235 IFLHLEAGKATPFRHQFTRLAIANFVTH 262 (346)
Q Consensus 235 ~~~~~~~~~~~~y~g~~~~~~l~~fi~~ 262 (346)
++|+++. +...++|. +...|++-|.+
T Consensus 79 iff~ng~-kid~~qGA-d~~gLe~kv~~ 104 (288)
T KOG0908|consen 79 IFFRNGV-KIDQIQGA-DASGLEEKVAK 104 (288)
T ss_pred EEEecCe-EeeeecCC-CHHHHHHHHHH
Confidence 9999874 55667665 44445544443
No 266
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.25 E-value=0.0022 Score=47.03 Aligned_cols=74 Identities=22% Similarity=0.320 Sum_probs=54.3
Q ss_pred hHHHHhhc--cCCeEEEEEecCCCCc---cHHHHHHHhccCCc-eeEEEe---cCHHHHhhcCCCCCCCCCeEEEEecCC
Q 019115 171 DEAERILT--VESKLVLGFLHDLEGM---ESEELAAASKLHSD-VNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEA 241 (346)
Q Consensus 171 ~~~~~~~~--~~~~~~v~f~~~~~~~---~~~~~~~~a~~~~~-~~f~~~---~~~~~~~~~~v~~~~~~p~i~~~~~~~ 241 (346)
+++++.+. +++.++|-|+++||++ ..+.+.++|+-..+ +.|+.+ ..+++++.|++. ..|+.++|+++.
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~---amPtfvffkngk 79 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDIS---YIPSTIFFFNGQ 79 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCce---eCcEEEEEECCc
Confidence 44555554 4788999999999999 55678888843344 777754 678999999998 379999999875
Q ss_pred CccccC
Q 019115 242 GKATPF 247 (346)
Q Consensus 242 ~~~~~y 247 (346)
.-...|
T Consensus 80 h~~~d~ 85 (114)
T cd02986 80 HMKVDY 85 (114)
T ss_pred EEEEec
Confidence 334444
No 267
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.25 E-value=0.0011 Score=47.28 Aligned_cols=59 Identities=19% Similarity=0.276 Sum_probs=44.1
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeC--cc------------------------------cHhHHHHCC
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA--YL------------------------------EKDLAKEYN 124 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~--~~------------------------------~~~~~~~~~ 124 (346)
++.|+.+.|++|..+.+.+.++.....+++.+..+.+ .. +...++++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4679999999999999999998766566565554432 21 124567889
Q ss_pred CCCCcEEEEEe
Q 019115 125 ILAYPTLYLFV 135 (346)
Q Consensus 125 i~~~Pt~~~~~ 135 (346)
+.++||+++.+
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999998854
No 268
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.22 E-value=0.0035 Score=47.40 Aligned_cols=92 Identities=10% Similarity=0.048 Sum_probs=64.1
Q ss_pred ChhHHHHhhccCCeEEEEEecCCCC-c----cHHHHHHHh-ccC-CceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEe
Q 019115 169 TTDEAERILTVESKLVLGFLHDLEG-M----ESEELAAAS-KLH-SDVNFYQT---TSADVAEFFHIHPKSKRPALIFLH 238 (346)
Q Consensus 169 s~~~~~~~~~~~~~~~v~f~~~~~~-~----~~~~~~~~a-~~~-~~~~f~~~---~~~~~~~~~~v~~~~~~p~i~~~~ 238 (346)
+...++.++......++++-.+-.. + ..-.+.+++ ++. .+++|+.+ .+++++.+||+. +.||+++|+
T Consensus 23 ~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~---siPTLl~Fk 99 (132)
T PRK11509 23 SESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVF---RFPATLVFT 99 (132)
T ss_pred ccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCc---cCCEEEEEE
Confidence 3367888888777777654432111 1 222344555 454 34777764 678999999999 599999999
Q ss_pred cCCCccccCCCCCCHHHHHHHHhccC
Q 019115 239 LEAGKATPFRHQFTRLAIANFVTHTK 264 (346)
Q Consensus 239 ~~~~~~~~y~g~~~~~~l~~fi~~~~ 264 (346)
++. ......|-.+.+++.+||++.-
T Consensus 100 dGk-~v~~i~G~~~k~~l~~~I~~~L 124 (132)
T PRK11509 100 GGN-YRGVLNGIHPWAELINLMRGLV 124 (132)
T ss_pred CCE-EEEEEeCcCCHHHHHHHHHHHh
Confidence 874 4566778888899999998643
No 269
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=97.19 E-value=0.0012 Score=46.79 Aligned_cols=79 Identities=15% Similarity=0.143 Sum_probs=58.9
Q ss_pred CceEeecccchhhhccCCC--cEEEEEeeCCC--chHHHHHHHHHHHHhcC--ceEEEEEECCCcccc-cchhhhcCCCC
Q 019115 266 PLVVTLTIHNAQFVFQDPR--KQLWLFAPAYG--SDKVILTFEEVAKALKG--KLLHVYVEMNSEGVG-RRVSQEFGVSG 338 (346)
Q Consensus 266 p~~~~lt~~~~~~~~~~~~--~~~~~f~~~~~--~~~~~~~~~~~a~~~~~--~~~f~~vd~~~~~~~-~~~~~~~gi~~ 338 (346)
|.++.++++++.++.+... .+++.|+...+ -.++.+.++++|+++++ ++.|+|+|.++++.- +-+-+.|||+-
T Consensus 1 ptlrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl 80 (120)
T cd03074 1 PTLRKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDL 80 (120)
T ss_pred CchhhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCccc
Confidence 5567888888888887766 77777886654 56899999999999985 599999999997511 12235678876
Q ss_pred CCCcccc
Q 019115 339 NAPRVSS 345 (346)
Q Consensus 339 ~~~P~~~ 345 (346)
. .|.|.
T Consensus 81 ~-~PqIG 86 (120)
T cd03074 81 F-RPQIG 86 (120)
T ss_pred C-CCcee
Confidence 4 57665
No 270
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.17 E-value=0.0098 Score=43.19 Aligned_cols=91 Identities=9% Similarity=0.134 Sum_probs=68.5
Q ss_pred ChhcHHHHHc-CCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeC-Cee
Q 019115 62 NGKNFSEFMG-KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA-GVR 139 (346)
Q Consensus 62 ~~~~~~~~~~-~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~-g~~ 139 (346)
+.++++.++. ++..++|-|+..--. .....|.++|+.+.+.+.|+... +.++...+++. .|+++++++ ...
T Consensus 7 ~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~e~ 79 (102)
T cd03066 7 SERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVDFYEPFMEE 79 (102)
T ss_pred CHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEEEeCCCCCC
Confidence 4556888887 788888888876444 35567899999997788887665 45677888775 799999975 434
Q ss_pred eEEe-eCCCCHHHHHHHHHHH
Q 019115 140 QFQF-FGERTRDVISAWVREK 159 (346)
Q Consensus 140 ~~~~-~g~~~~~~l~~~i~~~ 159 (346)
...| .|..+.+.|.+||...
T Consensus 80 ~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 80 PVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CcccCCCCCCHHHHHHHHHHh
Confidence 4568 7888999999999754
No 271
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.14 E-value=0.06 Score=51.42 Aligned_cols=169 Identities=14% Similarity=0.073 Sum_probs=112.8
Q ss_pred CCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCe-eeEEeeCCCCHHH
Q 019115 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV-RQFQFFGERTRDV 151 (346)
Q Consensus 73 ~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~-~~~~~~g~~~~~~ 151 (346)
+.+.++.|.. .|..|..+...++++++.. +++.+...+.+. ...|++.+..+|+ .-.+|.|-..-.+
T Consensus 19 ~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s-~ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i~f~g~P~g~E 86 (515)
T TIGR03140 19 NPVTLVLSAG-SHEKSKELLELLDEIASLS-DKISLTQNTADT----------LRKPSFTILRDGADTGIRFAGIPGGHE 86 (515)
T ss_pred CCEEEEEEeC-CCchhHHHHHHHHHHHHhC-CCeEEEEecCCc----------CCCCeEEEecCCcccceEEEecCCcHH
Confidence 3444545555 7999999999999988764 467664443222 3469998887764 3578999988888
Q ss_pred HHHHHHHHc--CCCceeccChhHHHHhhc-cCCeEEEEEecCCCCccHHHHHH---HhccCCceeEEE---ecCHHHHhh
Q 019115 152 ISAWVREKM--TLGTYSITTTDEAERILT-VESKLVLGFLHDLEGMESEELAA---ASKLHSDVNFYQ---TTSADVAEF 222 (346)
Q Consensus 152 l~~~i~~~~--~~~~~~i~s~~~~~~~~~-~~~~~~v~f~~~~~~~~~~~~~~---~a~~~~~~~f~~---~~~~~~~~~ 222 (346)
+..|+...+ +.+-..+ +++..+.+.. +.+..+..|..+.|......... ++...+++.... ...++++++
T Consensus 87 f~s~i~~i~~~~~~~~~l-~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~ 165 (515)
T TIGR03140 87 FTSLVLAILQVGGHGPKL-DEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEA 165 (515)
T ss_pred HHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHh
Confidence 988888765 2233344 5455555543 35666778889999886654433 343345555433 467899999
Q ss_pred cCCCCCCCCCeEEEEecCCCccccCCCCCCHHHHHHHHhc
Q 019115 223 FHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTH 262 (346)
Q Consensus 223 ~~v~~~~~~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~ 262 (346)
|++. +.|++++- ....+.|..+.+++.+-+..
T Consensus 166 ~~v~---~VP~~~i~-----~~~~~~g~~~~~~~~~~l~~ 197 (515)
T TIGR03140 166 LGIQ---GVPAVFLN-----GEEFHNGRMDLAELLEKLEE 197 (515)
T ss_pred cCCc---ccCEEEEC-----CcEEEecCCCHHHHHHHHhh
Confidence 9998 58998861 22457788777777766654
No 272
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0025 Score=43.98 Aligned_cols=54 Identities=13% Similarity=0.284 Sum_probs=39.2
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccH-----hHHHHC-CCCCCcEEEEEeCCe
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-----DLAKEY-NILAYPTLYLFVAGV 138 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~-----~~~~~~-~i~~~Pt~~~~~~g~ 138 (346)
++.|..+|||+|++....|.+. ++.+..++++.+. +..++- |.+++|++++ +|+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~ 62 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGK 62 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCE
Confidence 5678889999999988777732 5777777776554 334444 7899999876 663
No 273
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.99 E-value=0.013 Score=42.80 Aligned_cols=90 Identities=23% Similarity=0.374 Sum_probs=67.2
Q ss_pred ChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeC-----
Q 019115 62 NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA----- 136 (346)
Q Consensus 62 ~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~----- 136 (346)
+.++++..+..+++++|-|+..--. .....+.++|+.+.+++.|+... +.++..++++ .|++++|+.
T Consensus 7 s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~~~~ 78 (104)
T cd03069 7 TEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLFRPPRLSN 78 (104)
T ss_pred CHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEEechhhhc
Confidence 3456777777788888888876433 45678889999997788887765 4577888988 688888831
Q ss_pred --CeeeEEeeCCCCHHHHHHHHHHH
Q 019115 137 --GVRQFQFFGERTRDVISAWVREK 159 (346)
Q Consensus 137 --g~~~~~~~g~~~~~~l~~~i~~~ 159 (346)
......|.|..+.+.|.+||...
T Consensus 79 k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 79 KFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred ccCcccccccCcCCHHHHHHHHHhh
Confidence 12234689998999999999754
No 274
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.98 E-value=0.0028 Score=44.49 Aligned_cols=68 Identities=13% Similarity=0.302 Sum_probs=54.4
Q ss_pred cchhhhccCCCcEEEEEeeCCC-chHHHHHHHHHHHHhcCceEEEEEECCCcccccchhhhcCCCCCCCc
Q 019115 274 HNAQFVFQDPRKQLWLFAPAYG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPR 342 (346)
Q Consensus 274 ~~~~~~~~~~~~~~~~f~~~~~-~~~~~~~~~~~a~~~~~~~~f~~vd~~~~~~~~~~~~~~gi~~~~~P 342 (346)
..+..++.....++++|+.... -...+..|.++|...+|.=+.+|+||.+.+ .+.+|+.+.+++...|
T Consensus 10 KdfKKLLRTr~NVLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e-~kKLCKKlKv~~~~kp 78 (112)
T cd03067 10 KDFKKLLRTRNNVLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSE-SRKLCKKLKVDPSSKP 78 (112)
T ss_pred HHHHHHHhhcCcEEEEEecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChH-HHHHHHHHccCCCCCC
Confidence 3455667777777777776543 667888999999999999999999999866 7899999999855444
No 275
>PRK10638 glutaredoxin 3; Provisional
Probab=96.85 E-value=0.0039 Score=43.36 Aligned_cols=55 Identities=5% Similarity=0.166 Sum_probs=40.0
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHh----HHHHCCCCCCcEEEEEeCCee
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD----LAKEYNILAYPTLYLFVAGVR 139 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~----~~~~~~i~~~Pt~~~~~~g~~ 139 (346)
++.|..+||++|++....+++. ++.+..+|++++++ +.+..|...+|++++ +|+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~ 62 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQH 62 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEE
Confidence 5567789999999998888753 56677788876653 344557888998744 6743
No 276
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=96.81 E-value=0.0055 Score=43.37 Aligned_cols=61 Identities=18% Similarity=0.369 Sum_probs=40.9
Q ss_pred HHcCCCcEEEEEec----CCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhH----HHHCCCCCCcEEEEEeCCe
Q 019115 69 FMGKNRNVMVMFYA----NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL----AKEYNILAYPTLYLFVAGV 138 (346)
Q Consensus 69 ~~~~~~~~~v~F~a----~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~----~~~~~i~~~Pt~~~~~~g~ 138 (346)
.+.+ ++++|.-.. +||++|++....|++. ++.+..+|+++++++ .+..|-..+|++++ +|+
T Consensus 4 ~i~~-~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~ 72 (90)
T cd03028 4 LIKE-NPVVLFMKGTPEEPRCGFSRKVVQILNQL------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGE 72 (90)
T ss_pred hhcc-CCEEEEEcCCCCCCCCcHHHHHHHHHHHc------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCE
Confidence 3434 445554332 7999999988877764 467777888776544 34457788999844 774
No 277
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=96.69 E-value=0.061 Score=44.56 Aligned_cols=104 Identities=21% Similarity=0.274 Sum_probs=72.5
Q ss_pred CcEEcChhcHHHHHcCCCcEEEEEecCCCh-hHhhhhHHHHHHHHHcc-C---CcEEEEEeCccc---------------
Q 019115 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCY-WSKKLAPEFAAAAKMLK-G---EADLVMVDAYLE--------------- 116 (346)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~~v~F~a~wC~-~C~~~~p~~~~~~~~~~-~---~v~~~~v~~~~~--------------- 116 (346)
.+.+-+++.+.....++++++|.|.=+.|+ -|-.+...+.++.++.. + ++.++-|-+|.+
T Consensus 51 ~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~ 130 (207)
T COG1999 51 ELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNF 130 (207)
T ss_pred eeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccC
Confidence 556667777776666899999999988885 68888888888877776 2 444444443321
Q ss_pred --------------HhHHHHCCCCC---------------CcEEEEEe-CCeeeEEeeCCCCHHHHHHHHHHHc
Q 019115 117 --------------KDLAKEYNILA---------------YPTLYLFV-AGVRQFQFFGERTRDVISAWVREKM 160 (346)
Q Consensus 117 --------------~~~~~~~~i~~---------------~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (346)
.+++++|+|.. ...+++++ +|+....|.+...++.+.+.+++.+
T Consensus 131 ~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~ 204 (207)
T COG1999 131 DPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLL 204 (207)
T ss_pred CCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHh
Confidence 24566666652 23455666 8888888887777888888887765
No 278
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=96.66 E-value=0.0072 Score=48.73 Aligned_cols=31 Identities=16% Similarity=0.434 Sum_probs=24.5
Q ss_pred EEecCCChhHhhhhHHHHHHHHHccCCcEEE
Q 019115 79 MFYANWCYWSKKLAPEFAAAAKMLKGEADLV 109 (346)
Q Consensus 79 ~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~ 109 (346)
.|..|.|+.|-...|.|.++..+++.++.+-
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~ 32 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFR 32 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEE
Confidence 5889999999999999999999999855444
No 279
>PRK10824 glutaredoxin-4; Provisional
Probab=96.58 E-value=0.01 Score=43.88 Aligned_cols=66 Identities=17% Similarity=0.319 Sum_probs=42.0
Q ss_pred cHHHHHcCCCcEEEEEec----CCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHH----HCCCCCCcEEEEEeC
Q 019115 65 NFSEFMGKNRNVMVMFYA----NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAK----EYNILAYPTLYLFVA 136 (346)
Q Consensus 65 ~~~~~~~~~~~~~v~F~a----~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~----~~~i~~~Pt~~~~~~ 136 (346)
..++.+.++ +++|.-.. ||||+|++....|.+. ++.+..+|+++++++.. .-|-+.+|.+++ +
T Consensus 7 ~v~~~I~~~-~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~------~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~ 77 (115)
T PRK10824 7 KIQRQIAEN-PILLYMKGSPKLPSCGFSAQAVQALSAC------GERFAYVDILQNPDIRAELPKYANWPTFPQLWV--D 77 (115)
T ss_pred HHHHHHhcC-CEEEEECCCCCCCCCchHHHHHHHHHHc------CCCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--C
Confidence 345566554 45554333 6999999998887765 24455566666655433 346778999866 7
Q ss_pred Cee
Q 019115 137 GVR 139 (346)
Q Consensus 137 g~~ 139 (346)
|+.
T Consensus 78 G~~ 80 (115)
T PRK10824 78 GEL 80 (115)
T ss_pred CEE
Confidence 743
No 280
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=96.57 E-value=0.019 Score=55.23 Aligned_cols=97 Identities=13% Similarity=0.188 Sum_probs=66.7
Q ss_pred ceeccChhHHHHhhc----cCCeEEEEEecCCCCccHHH----H--HHHhccCCceeEEEe-------cCHHHHhhcCCC
Q 019115 164 TYSITTTDEAERILT----VESKLVLGFLHDLEGMESEE----L--AAASKLHSDVNFYQT-------TSADVAEFFHIH 226 (346)
Q Consensus 164 ~~~i~s~~~~~~~~~----~~~~~~v~f~~~~~~~~~~~----~--~~~a~~~~~~~f~~~-------~~~~~~~~~~v~ 226 (346)
..++.+.+++++.++ ++++++|.|+.+||.+.... + .++.+..+++.+... .+.++.++|++.
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~ 533 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVL 533 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCC
Confidence 345667777776663 35789999999999885432 1 122222234555432 135788999998
Q ss_pred CCCCCCeEEEEecCCCc--cccCCCCCCHHHHHHHHhcc
Q 019115 227 PKSKRPALIFLHLEAGK--ATPFRHQFTRLAIANFVTHT 263 (346)
Q Consensus 227 ~~~~~p~i~~~~~~~~~--~~~y~g~~~~~~l~~fi~~~ 263 (346)
+.|++++|+++++. ...+.|..+.+++.+++++.
T Consensus 534 ---g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 534 ---GLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred ---CCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 69999999865433 35778999999999999864
No 281
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=96.51 E-value=0.028 Score=41.93 Aligned_cols=72 Identities=11% Similarity=0.064 Sum_probs=51.8
Q ss_pred ccChhHHHHhhcc--CCeEEEEEec-------CCCCc---cHHHHHHHh-ccCCceeEEEec----------CHHHHhhc
Q 019115 167 ITTTDEAERILTV--ESKLVLGFLH-------DLEGM---ESEELAAAS-KLHSDVNFYQTT----------SADVAEFF 223 (346)
Q Consensus 167 i~s~~~~~~~~~~--~~~~~v~f~~-------~~~~~---~~~~~~~~a-~~~~~~~f~~~~----------~~~~~~~~ 223 (346)
+.+.+++.+.+.+ +.+++|.|++ +||++ ..+.+.+++ ++.+++.|..+. +.++...+
T Consensus 6 ~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~ 85 (119)
T cd02952 6 VRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDP 85 (119)
T ss_pred ccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhcc
Confidence 4567777777765 5688999999 99988 345666666 444467776542 35888889
Q ss_pred CCCCCCCCCeEEEEecC
Q 019115 224 HIHPKSKRPALIFLHLE 240 (346)
Q Consensus 224 ~v~~~~~~p~i~~~~~~ 240 (346)
++. .+.|++++|+.+
T Consensus 86 ~I~--~~iPT~~~~~~~ 100 (119)
T cd02952 86 KLT--TGVPTLLRWKTP 100 (119)
T ss_pred Ccc--cCCCEEEEEcCC
Confidence 986 148999999644
No 282
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=96.30 E-value=0.029 Score=45.14 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=43.4
Q ss_pred CcEEcChhcHHHHHcCCCcEEEEEecCCC-hhHhhhhHHHHHHHHHccC---CcEEEEEeCc
Q 019115 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWC-YWSKKLAPEFAAAAKMLKG---EADLVMVDAY 114 (346)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~~v~F~a~wC-~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~ 114 (346)
.+.+-+++.+.....++|+++|.|.=+.| ..|-.....+.++.++++. ++.++.|.+|
T Consensus 36 ~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 36 TLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred EEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 66667777776555589999999999999 6788888888887776643 6777777665
No 283
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.079 Score=40.68 Aligned_cols=103 Identities=16% Similarity=0.192 Sum_probs=71.1
Q ss_pred CCcEEcChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCccc-----------HhHHH-H
Q 019115 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE-----------KDLAK-E 122 (346)
Q Consensus 56 ~~v~~l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~-----------~~~~~-~ 122 (346)
-.+..++++.+.....++++++|-=.|+-|+.--+ ...++.|+++|++ ++.+...-|.+- .++|+ .
T Consensus 8 ~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~ 86 (162)
T COG0386 8 FSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLN 86 (162)
T ss_pred ceeeccCCCCccHHHhCCcEEEEEEcccccCCcHh-HHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhc
Confidence 35666777777766678999999999999998664 4578888999987 788888888531 23443 3
Q ss_pred CCCCCCc------------------------------------EEEEEe-CCeeeEEeeCCCCHHHHHHHHHHHc
Q 019115 123 YNILAYP------------------------------------TLYLFV-AGVRQFQFFGERTRDVISAWVREKM 160 (346)
Q Consensus 123 ~~i~~~P------------------------------------t~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (346)
|||+ +| |=++++ +|+++.+|....+++++...|++.+
T Consensus 87 YgVt-Fp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL 160 (162)
T COG0386 87 YGVT-FPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLL 160 (162)
T ss_pred cCce-eeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHh
Confidence 4433 22 223343 7777777777777777777666654
No 284
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.28 E-value=0.041 Score=37.84 Aligned_cols=72 Identities=11% Similarity=0.069 Sum_probs=51.0
Q ss_pred EEEEEecCCCCccH---HHHHHHh-ccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEecCCCccccCCCCCCHHH
Q 019115 183 LVLGFLHDLEGMES---EELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLA 255 (346)
Q Consensus 183 ~~v~f~~~~~~~~~---~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~v~~~~~~p~i~~~~~~~~~~~~y~g~~~~~~ 255 (346)
.+..|+.+||.... +.+.+++ .+...+.+..+ .+.++++.+++. +.|++++ ++ . ..+.|..+.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~---~vPt~~~--~g--~-~~~~G~~~~~~ 73 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIM---AVPAIVI--NG--D-VEFIGAPTKEE 73 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCc---cCCEEEE--CC--E-EEEecCCCHHH
Confidence 35678999999844 4444444 34445655543 677899999998 5899885 22 2 47788888899
Q ss_pred HHHHHhc
Q 019115 256 IANFVTH 262 (346)
Q Consensus 256 l~~fi~~ 262 (346)
+.+++..
T Consensus 74 l~~~l~~ 80 (82)
T TIGR00411 74 LVEAIKK 80 (82)
T ss_pred HHHHHHh
Confidence 9998864
No 285
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.24 E-value=0.031 Score=38.05 Aligned_cols=69 Identities=10% Similarity=0.064 Sum_probs=49.1
Q ss_pred EEEecCCCCc---cHHHHHHHh-ccCCceeEEEecCHHHHhhcCCCCCCCCCeEEEEecCCCccccCCCC-CCHHHHHHH
Q 019115 185 LGFLHDLEGM---ESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQ-FTRLAIANF 259 (346)
Q Consensus 185 v~f~~~~~~~---~~~~~~~~a-~~~~~~~f~~~~~~~~~~~~~v~~~~~~p~i~~~~~~~~~~~~y~g~-~~~~~l~~f 259 (346)
|-||.+||.+ ..+.+.+++ ++...+.|..+.+.+.+..+++. +.|++++ ++ ... +.|. .+.+.|.++
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~a~~~~v~---~vPti~i--~G--~~~-~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVTDMNEILEAGVT---ATPGVAV--DG--ELV-IMGKIPSKEEIKEI 74 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHcCCC---cCCEEEE--CC--EEE-EEeccCCHHHHHHH
Confidence 5578899998 444455655 56667888888878888899998 5899998 32 322 7775 355788877
Q ss_pred Hh
Q 019115 260 VT 261 (346)
Q Consensus 260 i~ 261 (346)
++
T Consensus 75 l~ 76 (76)
T TIGR00412 75 LK 76 (76)
T ss_pred hC
Confidence 63
No 286
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.20 E-value=0.046 Score=43.73 Aligned_cols=107 Identities=16% Similarity=0.197 Sum_probs=75.6
Q ss_pred CCcEEcChhcHHHHH---cCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEE
Q 019115 56 KDVVSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY 132 (346)
Q Consensus 56 ~~v~~l~~~~~~~~~---~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~ 132 (346)
..|..+++..+-+.+ .++-.|+|..|...-+-|.-....++++|.+|. +++|+++-.... ...|-=...||++
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp-~iKFVki~at~c---IpNYPe~nlPTl~ 166 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFP-QIKFVKIPATTC---IPNYPESNLPTLL 166 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCC-cceEEecccccc---cCCCcccCCCeEE
Confidence 467788888888655 234567888999999999999999999999998 788888743321 1224445689999
Q ss_pred EEeCCeeeEEeeC------C-CCHHHHHHHHHHHcCCCceec
Q 019115 133 LFVAGVRQFQFFG------E-RTRDVISAWVREKMTLGTYSI 167 (346)
Q Consensus 133 ~~~~g~~~~~~~g------~-~~~~~l~~~i~~~~~~~~~~i 167 (346)
+|..|.+...+.| . .+.+.+..++-+. ++.+...
T Consensus 167 VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa-ga~l~d~ 207 (240)
T KOG3170|consen 167 VYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA-GAALTDG 207 (240)
T ss_pred EeecchHHhheehhhhhcCCcCCHHHHHHHHHhc-ccccccc
Confidence 9998866665553 2 4566666665543 3444444
No 287
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=96.10 E-value=0.047 Score=46.93 Aligned_cols=100 Identities=13% Similarity=0.129 Sum_probs=61.1
Q ss_pred CceeccChhHHHHhhcc---CCeEEEEEecCCCCc---cHHHHHHHhccCCceeEEEecCHH--HHhhcCCCCCCCCCeE
Q 019115 163 GTYSITTTDEAERILTV---ESKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQTTSAD--VAEFFHIHPKSKRPAL 234 (346)
Q Consensus 163 ~~~~i~s~~~~~~~~~~---~~~~~v~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~~~~~--~~~~~~v~~~~~~p~i 234 (346)
.+.++.+.+.+-..++. ...+||.+|.+.... ....+..+|.-+..++|..+.... +...|... ..|+|
T Consensus 126 ~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~~~~~f~~~---~LPtl 202 (265)
T PF02114_consen 126 EVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCPASENFPDK---NLPTL 202 (265)
T ss_dssp SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCCTTTTS-TT---C-SEE
T ss_pred eEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccCcccCCccc---CCCEE
Confidence 56677776766666643 335666778765433 666677888888999998764432 66778877 49999
Q ss_pred EEEecCCC--cccc---C-CCCCCHHHHHHHHhccCC
Q 019115 235 IFLHLEAG--KATP---F-RHQFTRLAIANFVTHTKH 265 (346)
Q Consensus 235 ~~~~~~~~--~~~~---y-~g~~~~~~l~~fi~~~~~ 265 (346)
++|+.++- ..+. . ..+++..+|..|+.++..
T Consensus 203 lvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~ 239 (265)
T PF02114_consen 203 LVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGV 239 (265)
T ss_dssp EEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTTS
T ss_pred EEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCC
Confidence 99997741 1112 1 235788999999986653
No 288
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=96.06 E-value=0.019 Score=52.84 Aligned_cols=55 Identities=15% Similarity=0.249 Sum_probs=40.6
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHH---HH---------CCCCCCcEEEEEeCCee
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA---KE---------YNILAYPTLYLFVAGVR 139 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~---~~---------~~i~~~Pt~~~~~~g~~ 139 (346)
++.|..+|||+|++....+++. ++.+-.+|+++++... ++ .|.+++|++++ +|+.
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~ 70 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVH 70 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEE
Confidence 6779999999999988777653 5788888888766322 22 36788999966 6643
No 289
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=95.98 E-value=0.036 Score=51.60 Aligned_cols=95 Identities=9% Similarity=0.103 Sum_probs=63.0
Q ss_pred CCceeccChhHHHHhhccC-CeEEEEEecCCCCc---cHHHHHHHh----ccCCceeEEEe-----cCHHHHhhcCCCCC
Q 019115 162 LGTYSITTTDEAERILTVE-SKLVLGFLHDLEGM---ESEELAAAS----KLHSDVNFYQT-----TSADVAEFFHIHPK 228 (346)
Q Consensus 162 ~~~~~i~s~~~~~~~~~~~-~~~~v~f~~~~~~~---~~~~~~~~a----~~~~~~~f~~~-----~~~~~~~~~~v~~~ 228 (346)
.++.++ +.+.++..+... ...+|-||.+||+. ..+.|+++| +...-+.++.+ .|..+|+.|+|+
T Consensus 39 D~ii~L-d~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~-- 115 (606)
T KOG1731|consen 39 DPIIEL-DVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVS-- 115 (606)
T ss_pred CCeEEe-ehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCC--
Confidence 455565 667777666554 48888999999987 556666666 34555555543 677899999999
Q ss_pred CCCCeEEEEecCCCc---cccCCCCCCHHHHHHHH
Q 019115 229 SKRPALIFLHLEAGK---ATPFRHQFTRLAIANFV 260 (346)
Q Consensus 229 ~~~p~i~~~~~~~~~---~~~y~g~~~~~~l~~fi 260 (346)
++|++.+|.++... ...+.|.....++.+.+
T Consensus 116 -~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l 149 (606)
T KOG1731|consen 116 -GYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQL 149 (606)
T ss_pred -CCceeeecCCccccCcCCCcccCCcchhhHHHHH
Confidence 69999999876322 23334443344455444
No 290
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.059 Score=39.01 Aligned_cols=66 Identities=15% Similarity=0.303 Sum_probs=42.7
Q ss_pred HHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccH-hH----HHHCCCCCCcEEEEEeCCee
Q 019115 66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-DL----AKEYNILAYPTLYLFVAGVR 139 (346)
Q Consensus 66 ~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~-~~----~~~~~i~~~Pt~~~~~~g~~ 139 (346)
+++.+.++ + +|.|-.+||++|+.....|.. ++....++.+|-+++. ++ .+.-|-+.+|.+++ +|+-
T Consensus 7 v~~~i~~~-~-VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~ 77 (104)
T KOG1752|consen 7 VRKMISEN-P-VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKF 77 (104)
T ss_pred HHHHhhcC-C-EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEE
Confidence 44455444 3 455889999999997666665 4446677777766543 33 33335678999866 7743
No 291
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=95.86 E-value=0.029 Score=45.29 Aligned_cols=101 Identities=17% Similarity=0.277 Sum_probs=78.3
Q ss_pred CcEEc-ChhcHHHHHcCC---CcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEE
Q 019115 57 DVVSL-NGKNFSEFMGKN---RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY 132 (346)
Q Consensus 57 ~v~~l-~~~~~~~~~~~~---~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~ 132 (346)
.|.++ +++.|-..+.+. -.++|..|-+.-+-|.++...+.=+|.+|. .+.|.++-.. +....++|...++|++.
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP-~vKFckikss-~~gas~~F~~n~lP~Ll 216 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP-IVKFCKIKSS-NTGASDRFSLNVLPTLL 216 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC-ceeEEEeeec-cccchhhhcccCCceEE
Confidence 56666 567888877543 467889999999999999999999999998 6888888644 34677899999999999
Q ss_pred EEeCCeeeEEee------C-CCCHHHHHHHHHHH
Q 019115 133 LFVAGVRQFQFF------G-ERTRDVISAWVREK 159 (346)
Q Consensus 133 ~~~~g~~~~~~~------g-~~~~~~l~~~i~~~ 159 (346)
+|++|+.+..|. | ......+.+|++..
T Consensus 217 iYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 217 IYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred EeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 999997655442 2 34566677777665
No 292
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=95.82 E-value=0.017 Score=49.52 Aligned_cols=87 Identities=22% Similarity=0.426 Sum_probs=70.6
Q ss_pred CCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEe-CcccHhHHHHCCCCCCcEEEEEeCCeeeEEeeCCCCHHH
Q 019115 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD-AYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDV 151 (346)
Q Consensus 73 ~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~-~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~ 151 (346)
..++-+.||++||+..+..+|.++-....+. .+....|+ ....+....+||+.+.|++.+.... -..+|.|.++...
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~-~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t-~~~~~~~~r~l~s 153 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFS-SIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQT-CPASYRGERDLAS 153 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhcc-ccccccHHHHhhcccchhccccccCCcceeeccc-cchhhcccccHHH
Confidence 5688999999999999999999998888776 33333332 2234677889999999999888765 6788999999999
Q ss_pred HHHHHHHHcC
Q 019115 152 ISAWVREKMT 161 (346)
Q Consensus 152 l~~~i~~~~~ 161 (346)
|.+|..+.++
T Consensus 154 Lv~fy~~i~~ 163 (319)
T KOG2640|consen 154 LVNFYTEITP 163 (319)
T ss_pred HHHHHHhhcc
Confidence 9999988874
No 293
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=95.40 E-value=0.15 Score=42.77 Aligned_cols=107 Identities=16% Similarity=0.159 Sum_probs=71.1
Q ss_pred CCCcEEcChhcHHHHHcCCCcEEEEEecCCChh-HhhhhHHHHHHHHHccC--Cc----EEEEEeCcc------------
Q 019115 55 AKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYW-SKKLAPEFAAAAKMLKG--EA----DLVMVDAYL------------ 115 (346)
Q Consensus 55 ~~~v~~l~~~~~~~~~~~~~~~~v~F~a~wC~~-C~~~~p~~~~~~~~~~~--~v----~~~~v~~~~------------ 115 (346)
+..+++-+++.+.+.-..+|-++++|.=+.||. |-.+...+.++.++.+. ++ .|+.||-+.
T Consensus 121 pF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~e 200 (280)
T KOG2792|consen 121 PFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSE 200 (280)
T ss_pred ceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHh
Confidence 345667777777766667899999999999974 77777777666666554 22 466666422
Q ss_pred --------------cHhHHHHCCCCCCc-------------E--EEEEe-CCeeeEEeeCCCCHHHHHHHHHHHcC
Q 019115 116 --------------EKDLAKEYNILAYP-------------T--LYLFV-AGVRQFQFFGERTRDVISAWVREKMT 161 (346)
Q Consensus 116 --------------~~~~~~~~~i~~~P-------------t--~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (346)
-..+|++|.|..-+ + +++++ +|+.+.-|--.++++++.+-|.+++.
T Consensus 201 F~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~ 276 (280)
T KOG2792|consen 201 FHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVA 276 (280)
T ss_pred cChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHH
Confidence 13578888876433 3 34445 77544444445899999988887763
No 294
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=95.32 E-value=0.12 Score=44.82 Aligned_cols=80 Identities=11% Similarity=0.009 Sum_probs=53.8
Q ss_pred CCeEEEEEecCCCCccH---HHHHHHhccCC-ceeEEEe------------cCHHHHhhcCCCCCCCCCeEEEEecCCCc
Q 019115 180 ESKLVLGFLHDLEGMES---EELAAASKLHS-DVNFYQT------------TSADVAEFFHIHPKSKRPALIFLHLEAGK 243 (346)
Q Consensus 180 ~~~~~v~f~~~~~~~~~---~~~~~~a~~~~-~~~f~~~------------~~~~~~~~~~v~~~~~~p~i~~~~~~~~~ 243 (346)
.+..+|.|+.+||..+. +.+..+++-.+ .+..... .+..+++.+|+. +.|++++++++++.
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~---~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIR---TVPAVFLADPDPNQ 242 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCC---cCCeEEEEECCCCE
Confidence 56788899999998854 44555553222 2222211 135688999998 59999999984333
Q ss_pred -cccCCCCCCHHHHHHHHhc
Q 019115 244 -ATPFRHQFTRLAIANFVTH 262 (346)
Q Consensus 244 -~~~y~g~~~~~~l~~fi~~ 262 (346)
.....|..+.++|.+.|..
T Consensus 243 v~~v~~G~~s~~eL~~~i~~ 262 (271)
T TIGR02740 243 FTPIGFGVMSADELVDRILL 262 (271)
T ss_pred EEEEEeCCCCHHHHHHHHHH
Confidence 3345588899999888864
No 295
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=94.93 E-value=0.19 Score=40.21 Aligned_cols=50 Identities=6% Similarity=0.171 Sum_probs=38.7
Q ss_pred EEEecCHHHHhhcCCCCCCCCCeEEEEecCCCccccCCCCCCHHHHHHHHhcc
Q 019115 211 FYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHT 263 (346)
Q Consensus 211 f~~~~~~~~~~~~~v~~~~~~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~ 263 (346)
+....+..+.+.|++. ..|+++++.+++.....+.|..+.+++.+++...
T Consensus 122 ~~~d~~~~~~~~~~v~---~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 122 VAIDKGRQVIDAYGVG---PLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred EEECCcchHHHHcCCC---CcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 3334456788999998 5899999987765556778999999999998754
No 296
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=94.86 E-value=0.11 Score=38.79 Aligned_cols=76 Identities=5% Similarity=0.024 Sum_probs=49.0
Q ss_pred cCCeEEEEEecCCCCccHHHHHHHhccCC--------------------------ceeEEEecCHHHHhhcCCCCCCCCC
Q 019115 179 VESKLVLGFLHDLEGMESEELAAASKLHS--------------------------DVNFYQTTSADVAEFFHIHPKSKRP 232 (346)
Q Consensus 179 ~~~~~~v~f~~~~~~~~~~~~~~~a~~~~--------------------------~~~f~~~~~~~~~~~~~v~~~~~~p 232 (346)
..+.+++.|+.+||.........+..+.. .+.+....+..+++.|++. +.|
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~---~~P 95 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVS---VTP 95 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCC---ccc
Confidence 34678888888888864433222221111 1222233455789999998 589
Q ss_pred eEEEEecCCCccccCCCCCCHHHHHH
Q 019115 233 ALIFLHLEAGKATPFRHQFTRLAIAN 258 (346)
Q Consensus 233 ~i~~~~~~~~~~~~y~g~~~~~~l~~ 258 (346)
+++++.+++ ....+.|-.+.+.|.+
T Consensus 96 ~~~vid~~g-i~~~~~g~~~~~~~~~ 120 (123)
T cd03011 96 AIVIVDPGG-IVFVTTGVTSEWGLRL 120 (123)
T ss_pred EEEEEcCCC-eEEEEeccCCHHHHHh
Confidence 999998775 6666778888877754
No 297
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=0.076 Score=50.81 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=64.4
Q ss_pred cChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHH---HHHHHHccCCcEEEEEeCcccHhHHHHCC--------CCCCc
Q 019115 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLEKDLAKEYN--------ILAYP 129 (346)
Q Consensus 61 l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~~~~~~~~~~~--------i~~~P 129 (346)
=..+.|.+....+||+++....+||.-|+-|..+= .++|+.++..+.-++||-++-|++-+.|. --++|
T Consensus 31 W~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWP 110 (667)
T COG1331 31 WGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWP 110 (667)
T ss_pred cCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCc
Confidence 47788999999999999999999999999998653 55677777788999999998887766553 55899
Q ss_pred EEEEEe-CCee
Q 019115 130 TLYLFV-AGVR 139 (346)
Q Consensus 130 t~~~~~-~g~~ 139 (346)
-.++.- +|+.
T Consensus 111 LtVfLTPd~kP 121 (667)
T COG1331 111 LTVFLTPDGKP 121 (667)
T ss_pred eeEEECCCCce
Confidence 887776 7764
No 298
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=94.69 E-value=0.9 Score=33.18 Aligned_cols=90 Identities=12% Similarity=0.169 Sum_probs=62.5
Q ss_pred ChhcHHHHHcCC-CcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCC---
Q 019115 62 NGKNFSEFMGKN-RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG--- 137 (346)
Q Consensus 62 ~~~~~~~~~~~~-~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g--- 137 (346)
+.++++.++... +.++|-|+..--+ .....+.++|+.+.+++.|+... +.++.+++++. .|.+++|+.-
T Consensus 7 s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~-~~~vvl~rp~~~~ 79 (107)
T cd03068 7 TLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVS-PGQLVVFQPEKFQ 79 (107)
T ss_pred CHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCC-CCceEEECcHHHh
Confidence 345567776665 7778877766433 35677889999997788887665 35677888876 5777787411
Q ss_pred ----eeeEEeeCC-CCHHH-HHHHHHH
Q 019115 138 ----VRQFQFFGE-RTRDV-ISAWVRE 158 (346)
Q Consensus 138 ----~~~~~~~g~-~~~~~-l~~~i~~ 158 (346)
.....|.|. .+.+. |.+|+..
T Consensus 80 ~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 80 SKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred hhcCcceeeeeccccchHHHHHHHHhc
Confidence 134567877 66656 9999874
No 299
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=94.68 E-value=0.12 Score=48.67 Aligned_cols=96 Identities=15% Similarity=0.153 Sum_probs=66.3
Q ss_pred eccChhHHHHhhccCC--eEEEEEecCCCCccHH----HH---HHHhccCCcee--EEEec----CHHHHhhcCCCCCCC
Q 019115 166 SITTTDEAERILTVES--KLVLGFLHDLEGMESE----EL---AAASKLHSDVN--FYQTT----SADVAEFFHIHPKSK 230 (346)
Q Consensus 166 ~i~s~~~~~~~~~~~~--~~~v~f~~~~~~~~~~----~~---~~~a~~~~~~~--f~~~~----~~~~~~~~~v~~~~~ 230 (346)
.+++..++++.+.+++ ++++-||.+||-...+ .| ....+..+-+. ...+. +.++-++|++- +
T Consensus 458 ~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~---G 534 (569)
T COG4232 458 PISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVF---G 534 (569)
T ss_pred ccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCC---C
Confidence 4556668888887766 9999999999976322 12 11223323222 22332 23566788876 6
Q ss_pred CCeEEEEecCCCccccCCCCCCHHHHHHHHhccC
Q 019115 231 RPALIFLHLEAGKATPFRHQFTRLAIANFVTHTK 264 (346)
Q Consensus 231 ~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~ 264 (346)
.|++++|..+++++....|.++.+.+.+++++..
T Consensus 535 ~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 535 VPTYLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred CCEEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 8999999977777777999999999999998653
No 300
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=94.61 E-value=0.11 Score=38.11 Aligned_cols=79 Identities=10% Similarity=0.153 Sum_probs=47.2
Q ss_pred cCCeEEEEEecCCCCccHHHHHH------Hh-ccCCceeEEEe--c---------------------CHHHHhhcCCCCC
Q 019115 179 VESKLVLGFLHDLEGMESEELAA------AS-KLHSDVNFYQT--T---------------------SADVAEFFHIHPK 228 (346)
Q Consensus 179 ~~~~~~v~f~~~~~~~~~~~~~~------~a-~~~~~~~f~~~--~---------------------~~~~~~~~~v~~~ 228 (346)
+.+..++.|+++||......... +. .+..++.+... . +.+++..++++
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~-- 81 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN-- 81 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT----
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC--
Confidence 46778888999999885533322 22 23334444331 1 23588999998
Q ss_pred CCCCeEEEEecCCCccccCCCCCCHHHHHHHH
Q 019115 229 SKRPALIFLHLEAGKATPFRHQFTRLAIANFV 260 (346)
Q Consensus 229 ~~~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi 260 (346)
+.|+++++..++.....+.|-.+.++|..++
T Consensus 82 -gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 82 -GTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred -ccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 6999999875544455678999989888764
No 301
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.33 Score=41.32 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=28.5
Q ss_pred HHHHCCCCCCcEEEEEeCCeeeEEeeCCCCHHHHHHHHHHH
Q 019115 119 LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREK 159 (346)
Q Consensus 119 ~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 159 (346)
+++++|+.++||+++ +|+ .+.|..+.+++.+.|...
T Consensus 207 ~a~~~gv~gTPt~~v--~~~---~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 207 LAQQLGVNGTPTFIV--NGK---LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHhcCCCcCCeEEE--CCe---eecCCCCHHHHHHHHHHh
Confidence 456789999999877 553 788888888888888754
No 302
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=94.53 E-value=0.5 Score=38.44 Aligned_cols=35 Identities=23% Similarity=0.534 Sum_probs=28.3
Q ss_pred HHHHCCCCCCcEEEEEeCCeeeEEeeCCCCHHHHHHHHH
Q 019115 119 LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVR 157 (346)
Q Consensus 119 ~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~ 157 (346)
.+.++||.++|++++ +|+ ..+.|....+.+.+.|+
T Consensus 159 ~a~~~gv~GvP~~vv--~g~--~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 159 EARQLGVFGVPTFVV--NGK--YRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHHHTTCSSSSEEEE--TTT--EEEESCSSHHHHHHHH-
T ss_pred HHHHcCCcccCEEEE--CCE--EEEECCCCHHHHHHHhC
Confidence 456789999999999 775 67889999988887763
No 303
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=94.47 E-value=0.068 Score=50.37 Aligned_cols=45 Identities=7% Similarity=0.158 Sum_probs=36.6
Q ss_pred cCHHHHhhcCCCCCCCCCeEEEEecCCCccccCCCCCCHHHHHHHHhc
Q 019115 215 TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTH 262 (346)
Q Consensus 215 ~~~~~~~~~~v~~~~~~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~ 262 (346)
.+..+++.|++. ++|+.+++.+++.....+.|..+.++|.++|+.
T Consensus 127 ~~~~lak~fgV~---giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 127 NGGTLAQSLNIS---VYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred ccHHHHHHcCCC---CcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 456788899998 599998887665566778899999999999983
No 304
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=94.34 E-value=0.13 Score=38.42 Aligned_cols=70 Identities=16% Similarity=0.168 Sum_probs=40.4
Q ss_pred hHHHHhhccCCeEEEEEecCCCCccH---HHHHHHhc---cCCceeEEE-ecC-HHHHhhcCCCCCCCCCeEEEEecCC
Q 019115 171 DEAERILTVESKLVLGFLHDLEGMES---EELAAASK---LHSDVNFYQ-TTS-ADVAEFFHIHPKSKRPALIFLHLEA 241 (346)
Q Consensus 171 ~~~~~~~~~~~~~~v~f~~~~~~~~~---~~~~~~a~---~~~~~~f~~-~~~-~~~~~~~~v~~~~~~p~i~~~~~~~ 241 (346)
+.++....++++++|.|+.+||++.. +.+.+.+. ...++.... ..+ ......|++.. .+.|+++++.+++
T Consensus 10 ~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g-~~vPt~~f~~~~G 87 (117)
T cd02959 10 DGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDG-GYIPRILFLDPSG 87 (117)
T ss_pred HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCC-CccceEEEECCCC
Confidence 34455556788899999999998833 33443321 222222222 222 23456777651 1389999997554
No 305
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=93.96 E-value=0.14 Score=37.03 Aligned_cols=90 Identities=18% Similarity=0.164 Sum_probs=46.4
Q ss_pred eeccChhHHHHhhcc--CCeEEEEEecCCCCccHHHH---HHHhc-cCCceeEEEe-------cCHHHHhhcCCCCCCCC
Q 019115 165 YSITTTDEAERILTV--ESKLVLGFLHDLEGMESEEL---AAASK-LHSDVNFYQT-------TSADVAEFFHIHPKSKR 231 (346)
Q Consensus 165 ~~i~s~~~~~~~~~~--~~~~~v~f~~~~~~~~~~~~---~~~a~-~~~~~~f~~~-------~~~~~~~~~~v~~~~~~ 231 (346)
.+|++.++++++++. ..+++|+=....|+-....+ ..... ..+++.++.. .+..+++.|||.. ..
T Consensus 2 ~~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~H--eS 79 (105)
T PF11009_consen 2 KPLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKH--ES 79 (105)
T ss_dssp -E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT------S
T ss_pred CccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCc--CC
Confidence 357899999999976 45555433344576544443 33332 2223666653 3457899999986 57
Q ss_pred CeEEEEecCCCccccCCCCCCHHHH
Q 019115 232 PALIFLHLEAGKATPFRHQFTRLAI 256 (346)
Q Consensus 232 p~i~~~~~~~~~~~~y~g~~~~~~l 256 (346)
|-+++++++......-...++.++|
T Consensus 80 PQ~ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 80 PQVILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp SEEEEEETTEEEEEEEGGG-SHHHH
T ss_pred CcEEEEECCEEEEECccccCCHHhc
Confidence 9999999874333333345565554
No 306
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=93.79 E-value=0.39 Score=36.17 Aligned_cols=70 Identities=11% Similarity=0.059 Sum_probs=44.1
Q ss_pred ChhHHHHhhccCCeEEEEEecCCCCccHHH----HH--HHh-ccCCceeEEEe---cCHHHHh--------hcCCCCCCC
Q 019115 169 TTDEAERILTVESKLVLGFLHDLEGMESEE----LA--AAS-KLHSDVNFYQT---TSADVAE--------FFHIHPKSK 230 (346)
Q Consensus 169 s~~~~~~~~~~~~~~~v~f~~~~~~~~~~~----~~--~~a-~~~~~~~f~~~---~~~~~~~--------~~~v~~~~~ 230 (346)
+.+.++....+++.++|.|+.+||...... |. +++ .+..++.+..+ ..+++.+ .+++. +
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~---G 80 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQG---G 80 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCC---C
Confidence 345677777888999999999999884322 22 222 23344444332 3444543 24665 6
Q ss_pred CCeEEEEecCC
Q 019115 231 RPALIFLHLEA 241 (346)
Q Consensus 231 ~p~i~~~~~~~ 241 (346)
+|+++++.+++
T Consensus 81 ~Pt~vfl~~~G 91 (124)
T cd02955 81 WPLNVFLTPDL 91 (124)
T ss_pred CCEEEEECCCC
Confidence 99999998765
No 307
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=93.79 E-value=0.46 Score=35.07 Aligned_cols=87 Identities=8% Similarity=0.087 Sum_probs=56.2
Q ss_pred HHHhhccCCeEEEEEecCCCCccHH----HHH--HHh-ccCCceeEEEe-----cCHHHHhhcCCCCCCCCCeEEEEec-
Q 019115 173 AERILTVESKLVLGFLHDLEGMESE----ELA--AAS-KLHSDVNFYQT-----TSADVAEFFHIHPKSKRPALIFLHL- 239 (346)
Q Consensus 173 ~~~~~~~~~~~~v~f~~~~~~~~~~----~~~--~~a-~~~~~~~f~~~-----~~~~~~~~~~v~~~~~~p~i~~~~~- 239 (346)
++....+++.++|.++.+||..... .+. .+. .+..++.+... ....++..|++. ++|+++++.+
T Consensus 10 ~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~---~~P~~~~i~~~ 86 (114)
T cd02958 10 KQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVD---KYPHIAIIDPR 86 (114)
T ss_pred HHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCcc---CCCeEEEEeCc
Confidence 3444556788888899999865322 121 112 12234433332 233688889987 5999999987
Q ss_pred CCCccccCCCCCCHHHHHHHHhc
Q 019115 240 EAGKATPFRHQFTRLAIANFVTH 262 (346)
Q Consensus 240 ~~~~~~~y~g~~~~~~l~~fi~~ 262 (346)
.+.....+.|..+.+++..-+++
T Consensus 87 ~g~~l~~~~G~~~~~~f~~~L~~ 109 (114)
T cd02958 87 TGEVLKVWSGNITPEDLLSQLIE 109 (114)
T ss_pred cCcEeEEEcCCCCHHHHHHHHHH
Confidence 45556677899888888777654
No 308
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=93.75 E-value=0.69 Score=32.51 Aligned_cols=70 Identities=13% Similarity=-0.063 Sum_probs=47.1
Q ss_pred cCCeEEEEEecCCCCc---cHHHHHHHhccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEecCCCccccCCCCCC
Q 019115 179 VESKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFT 252 (346)
Q Consensus 179 ~~~~~~v~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~---~~~~~~~~~~v~~~~~~p~i~~~~~~~~~~~~y~g~~~ 252 (346)
++++-+..|..++|.. ..+.+.+++...+++.+... ..+++++.|++. +.|++++ ++ ...+.|..+
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~---~vPt~vi--dG---~~~~~G~~~ 82 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIM---SVPAIFL--NG---ELFGFGRMT 82 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCc---cCCEEEE--CC---EEEEeCCCC
Confidence 4666777888998887 44445566655667777654 456899999998 5899974 22 245567555
Q ss_pred HHHH
Q 019115 253 RLAI 256 (346)
Q Consensus 253 ~~~l 256 (346)
.+++
T Consensus 83 ~~e~ 86 (89)
T cd03026 83 LEEI 86 (89)
T ss_pred HHHH
Confidence 4443
No 309
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.12 E-value=0.25 Score=40.25 Aligned_cols=77 Identities=19% Similarity=0.166 Sum_probs=53.6
Q ss_pred eeccChhHHHHhhc--cCCeEEEEEecCCCC---ccHHHHHHHh-c-cCCceeEEEe---cCHHHHhhcCCCCC---CCC
Q 019115 165 YSITTTDEAERILT--VESKLVLGFLHDLEG---MESEELAAAS-K-LHSDVNFYQT---TSADVAEFFHIHPK---SKR 231 (346)
Q Consensus 165 ~~i~s~~~~~~~~~--~~~~~~v~f~~~~~~---~~~~~~~~~a-~-~~~~~~f~~~---~~~~~~~~~~v~~~---~~~ 231 (346)
+.+++...+++.++ +...|+|-||..|.. ...+.|.+++ + .-+..+||.+ --++.+.+|+++.. ...
T Consensus 127 kyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQL 206 (265)
T KOG0914|consen 127 KYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQL 206 (265)
T ss_pred eeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccC
Confidence 34444444544453 456899999987654 4777788877 3 3456678754 56788999998743 579
Q ss_pred CeEEEEecCC
Q 019115 232 PALIFLHLEA 241 (346)
Q Consensus 232 p~i~~~~~~~ 241 (346)
|++++|+.+.
T Consensus 207 PT~ilFq~gk 216 (265)
T KOG0914|consen 207 PTYILFQKGK 216 (265)
T ss_pred CeEEEEccch
Confidence 9999999875
No 310
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=93.10 E-value=0.25 Score=37.24 Aligned_cols=74 Identities=12% Similarity=0.015 Sum_probs=44.0
Q ss_pred CCeEEEEEecCCCCccHHHHHHHhccC--CceeEE--------------------------EecCHHHHhhcCCCCCCCC
Q 019115 180 ESKLVLGFLHDLEGMESEELAAASKLH--SDVNFY--------------------------QTTSADVAEFFHIHPKSKR 231 (346)
Q Consensus 180 ~~~~~v~f~~~~~~~~~~~~~~~a~~~--~~~~f~--------------------------~~~~~~~~~~~~v~~~~~~ 231 (346)
.+.++|.|+.+||....+....+.++. .++.+. ......+++.|++. +.
T Consensus 25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~---~~ 101 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEHPVLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVY---GV 101 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCC---CC
Confidence 567888899999987544433332111 112221 12344677778887 48
Q ss_pred CeEEEEecCCCccccCCCCCCHHHH
Q 019115 232 PALIFLHLEAGKATPFRHQFTRLAI 256 (346)
Q Consensus 232 p~i~~~~~~~~~~~~y~g~~~~~~l 256 (346)
|+.+++.+++.....+.|..+.+.|
T Consensus 102 P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 102 PETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CeEEEECCCceEEEEEeccCChHhc
Confidence 9777776555456667787766543
No 311
>smart00594 UAS UAS domain.
Probab=93.09 E-value=1.1 Score=33.49 Aligned_cols=84 Identities=11% Similarity=0.155 Sum_probs=53.6
Q ss_pred HHhhccCCeEEEEEecCCCCccHHHHHH------Hh-ccCCceeEEEe-----cCHHHHhhcCCCCCCCCCeEEEEecCC
Q 019115 174 ERILTVESKLVLGFLHDLEGMESEELAA------AS-KLHSDVNFYQT-----TSADVAEFFHIHPKSKRPALIFLHLEA 241 (346)
Q Consensus 174 ~~~~~~~~~~~v~f~~~~~~~~~~~~~~------~a-~~~~~~~f~~~-----~~~~~~~~~~v~~~~~~p~i~~~~~~~ 241 (346)
+....+.+..+|.++.+||......-+. +. .+..++.+... ....++..+++. ++|+++++.+.+
T Consensus 21 ~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~---~~P~~~~l~~~~ 97 (122)
T smart00594 21 QEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLD---SFPYVAIVDPRT 97 (122)
T ss_pred HHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcC---CCCEEEEEecCC
Confidence 4444567788888999998763222221 11 12234444321 234689999998 599999997664
Q ss_pred Cc-----cccCCCCCCHHHHHHHH
Q 019115 242 GK-----ATPFRHQFTRLAIANFV 260 (346)
Q Consensus 242 ~~-----~~~y~g~~~~~~l~~fi 260 (346)
+. .....|..+.+++..++
T Consensus 98 g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 98 GQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CceeEEEeccccCCCCHHHHHHhh
Confidence 22 33567888988888775
No 312
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=92.96 E-value=0.31 Score=39.08 Aligned_cols=45 Identities=2% Similarity=-0.098 Sum_probs=32.6
Q ss_pred CHHHHhhcCCCCCCCCCeEEEEecCCCccccCCCCCCHHHHHHHHhcc
Q 019115 216 SADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHT 263 (346)
Q Consensus 216 ~~~~~~~~~v~~~~~~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~ 263 (346)
+..+.+.|++. +.|+.+++.+++.....+.|..+.+++.+++...
T Consensus 126 ~~~~~~~~~v~---~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 126 NGKLGLDLGVY---GAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred CCchHHhcCCe---eCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHH
Confidence 34566777776 5898777766555566677888999999988753
No 313
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=92.61 E-value=0.73 Score=30.09 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=35.2
Q ss_pred EEEEEecCCCCccH---HHHHHHhccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEE
Q 019115 183 LVLGFLHDLEGMES---EELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIF 236 (346)
Q Consensus 183 ~~v~f~~~~~~~~~---~~~~~~a~~~~~~~f~~~---~~~~~~~~~~v~~~~~~p~i~~ 236 (346)
-+..|+.+||.... +.+.+++...+++.|... .++++++.+++. +.|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~---~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVM---SVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCc---ccCEEEE
Confidence 35678999998844 344455444456666543 457899999997 4899875
No 314
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=92.40 E-value=0.55 Score=36.45 Aligned_cols=54 Identities=9% Similarity=0.193 Sum_probs=38.0
Q ss_pred EEEEecC------CChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHh----HHHHCCC----CCCcEEEEEeCCe
Q 019115 77 MVMFYAN------WCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD----LAKEYNI----LAYPTLYLFVAGV 138 (346)
Q Consensus 77 ~v~F~a~------wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~----~~~~~~i----~~~Pt~~~~~~g~ 138 (346)
+|.|.++ +|++|++....|+.. +|.|-.+|++.+++ +.+..+- ..+|.+++ +|+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~ 69 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGR 69 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCE
Confidence 3455666 899999988887754 57788899877654 3344454 67898765 673
No 315
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=92.33 E-value=1.7 Score=32.88 Aligned_cols=74 Identities=19% Similarity=0.199 Sum_probs=54.4
Q ss_pred EEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCC----CCcEEEEEeCCeeeEEeeCCCCHHH
Q 019115 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNIL----AYPTLYLFVAGVRQFQFFGERTRDV 151 (346)
Q Consensus 76 ~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~----~~Pt~~~~~~g~~~~~~~g~~~~~~ 151 (346)
-++.+++|.|+=|..+...++. .++.+-.+..++-..+-+++||. +=-|.++ +|. ...|....+.
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~------~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy---~vEGHVPa~a 95 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKA------NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGY---YVEGHVPAEA 95 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHh------CCcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCE---EEeccCCHHH
Confidence 4677899999999998777662 16777778877877888888875 2334444 663 4468899999
Q ss_pred HHHHHHHHc
Q 019115 152 ISAWVREKM 160 (346)
Q Consensus 152 l~~~i~~~~ 160 (346)
+.+++.+.-
T Consensus 96 I~~ll~~~p 104 (149)
T COG3019 96 IARLLAEKP 104 (149)
T ss_pred HHHHHhCCC
Confidence 998887653
No 316
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=92.08 E-value=2.8 Score=29.80 Aligned_cols=74 Identities=15% Similarity=0.073 Sum_probs=52.5
Q ss_pred CCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCe-eeEEeeCCCCHH
Q 019115 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV-RQFQFFGERTRD 150 (346)
Q Consensus 72 ~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~-~~~~~~g~~~~~ 150 (346)
++.+.++.|..+. ..|..+...++++++.-. ++.+-..+..+ ..|++.+.++|+ .-.+|.|-..-.
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd-kI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~Gh 84 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLSD-KITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPMGH 84 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC-ceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCCch
Confidence 4455566676655 999999988888887644 56664433211 479999988763 247899998888
Q ss_pred HHHHHHHH
Q 019115 151 VISAWVRE 158 (346)
Q Consensus 151 ~l~~~i~~ 158 (346)
++..+|..
T Consensus 85 Ef~Slila 92 (94)
T cd02974 85 EFTSLVLA 92 (94)
T ss_pred hHHHHHHH
Confidence 88888864
No 317
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=91.93 E-value=0.84 Score=31.67 Aligned_cols=75 Identities=21% Similarity=0.220 Sum_probs=59.0
Q ss_pred CcEEEEEecCCChhHhhhhHHHHHHHHHc-cCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCeeeEEeeCCCCH
Q 019115 74 RNVMVMFYANWCYWSKKLAPEFAAAAKML-KGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTR 149 (346)
Q Consensus 74 ~~~~v~F~a~wC~~C~~~~p~~~~~~~~~-~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~ 149 (346)
..++=.|.|..-+.+++....+.++.+++ .+.+.+-.||+.+++++++.++|-.+||++=...+ ...+..|.++.
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~-P~rriiGdls~ 78 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILPP-PVRKIIGDLSD 78 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCC-Ccceeeccccc
Confidence 34555677888888999999999887765 44777888999999999999999999996554444 56777787653
No 318
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=91.90 E-value=0.73 Score=37.42 Aligned_cols=42 Identities=2% Similarity=-0.101 Sum_probs=31.2
Q ss_pred HHHhhcCCCCCCCCCeEEEEecCCCccccCCCCCCHHHHHHHHhc
Q 019115 218 DVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTH 262 (346)
Q Consensus 218 ~~~~~~~v~~~~~~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~ 262 (346)
.+...|++. +.|+.+++.+++.....+.|..+.+++.++|+.
T Consensus 133 ~~~~~~gv~---~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~ 174 (185)
T PRK15412 133 MLGLDLGVY---GAPETFLIDGNGIIRYRHAGDLNPRVWESEIKP 174 (185)
T ss_pred cHHHhcCCC---cCCeEEEECCCceEEEEEecCCCHHHHHHHHHH
Confidence 455567776 589888887665556777899888888888863
No 319
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=91.73 E-value=1.1 Score=29.97 Aligned_cols=60 Identities=25% Similarity=0.313 Sum_probs=48.1
Q ss_pred EEEEEecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcccHhHHHHCCCCCCcEEEEEe
Q 019115 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (346)
Q Consensus 76 ~~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~ 135 (346)
.+-.|-+..-+..++....+.++.+++.+ .+.+-.||+.+++++++.++|-.+||++=..
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~ 63 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKVL 63 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhcC
Confidence 34455566668888888888888877644 7888889999999999999999999965433
No 320
>PRK09301 circadian clock protein KaiB; Provisional
Probab=91.55 E-value=0.86 Score=32.65 Aligned_cols=76 Identities=21% Similarity=0.225 Sum_probs=61.1
Q ss_pred CCcEEEEEecCCChhHhhhhHHHHHHHHHc-cCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCeeeEEeeCCCCH
Q 019115 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKML-KGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTR 149 (346)
Q Consensus 73 ~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~-~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~ 149 (346)
+..++=.|.|..-+..++....+.++-+.+ .+.+.+-.||+.+++++++.++|-.+||++=...+ ...+..|.++.
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~-P~rriiGDlsd 81 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILPP-PVRKIIGDLSD 81 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCCC-Ccceeeccccc
Confidence 356677788888899999999999987765 44777888999999999999999999996554444 66778888753
No 321
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=91.31 E-value=2 Score=33.68 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=48.2
Q ss_pred CCeEEEEEecCCCCccHHHH---HHHhccCCceeEEE--ec-------------CHHH-Hhhc---CCCCCCCCCeEEEE
Q 019115 180 ESKLVLGFLHDLEGMESEEL---AAASKLHSDVNFYQ--TT-------------SADV-AEFF---HIHPKSKRPALIFL 237 (346)
Q Consensus 180 ~~~~~v~f~~~~~~~~~~~~---~~~a~~~~~~~f~~--~~-------------~~~~-~~~~---~v~~~~~~p~i~~~ 237 (346)
.+..+|.|+.+||.+..+.. .++++-. ++.+.. .. .... ...+ ++. +.|+.+++
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~---~iPTt~LI 125 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPV---VTPATFLV 125 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCC---CCCeEEEE
Confidence 44568899999999955544 4443211 222211 11 1222 2344 554 58999999
Q ss_pred ecCCCc-cccCCCCCCHHHHHHHHhc
Q 019115 238 HLEAGK-ATPFRHQFTRLAIANFVTH 262 (346)
Q Consensus 238 ~~~~~~-~~~y~g~~~~~~l~~fi~~ 262 (346)
.++++. ...+.|..+.+++.+.|..
T Consensus 126 D~~G~~i~~~~~G~~s~~~l~~~I~~ 151 (153)
T TIGR02738 126 NVNTRKAYPVLQGAVDEAELANRMDE 151 (153)
T ss_pred eCCCCEEEEEeecccCHHHHHHHHHH
Confidence 876543 4467899999988887753
No 322
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=91.16 E-value=0.37 Score=40.74 Aligned_cols=58 Identities=12% Similarity=0.040 Sum_probs=38.2
Q ss_pred HcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCC-CCCCcEEEEEe
Q 019115 70 MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYN-ILAYPTLYLFV 135 (346)
Q Consensus 70 ~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~-i~~~Pt~~~~~ 135 (346)
...+|+.++...+.|||.|...+=.+--+-.+++. +.+.-...+. .+ -..+|++.+..
T Consensus 55 ~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn-~~l~~~~S~~-------~d~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 55 APNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN-FSLEYHYSDP-------YDNYPNTPTLIFNN 113 (249)
T ss_pred CCCCeeEEEEEecccCccchhhHHHHHHHHHhcCC-eeeEEeecCc-------ccCCCCCCeEEEec
Confidence 36789999999999999999887555555566653 3222111111 22 24689998876
No 323
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=90.68 E-value=0.96 Score=35.36 Aligned_cols=129 Identities=11% Similarity=0.113 Sum_probs=87.1
Q ss_pred CCCcEEcChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcc--------cHh----HHH
Q 019115 55 AKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL--------EKD----LAK 121 (346)
Q Consensus 55 ~~~v~~l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~--------~~~----~~~ 121 (346)
+-.+.+++++.++.-..++++++|-=-|+.|+.-..--..+..+.++|++ ++.+..--|.. +.+ ++.
T Consensus 16 df~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~f~~~ 95 (171)
T KOG1651|consen 16 DFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEILNFVKV 95 (171)
T ss_pred eeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHHHHHHHh
Confidence 44666777777776667899999999999999988667799999999987 88888888853 223 345
Q ss_pred HCCCCCCcEEEEEe-CCeeeEEeeCCCCHHHHHHHHHHHcCCCceeccChhHHHHhhccCCeEEEEEecCCCCc
Q 019115 122 EYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGM 194 (346)
Q Consensus 122 ~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~s~~~~~~~~~~~~~~~v~f~~~~~~~ 194 (346)
+|+.. +|-+-=++ +| . .+..+.+|+++..+..+.. .=.=++.+|+-+.+-.+|.=|.+..++
T Consensus 96 r~~~~-f~if~KidVNG--------~-~~~PlykfLK~~~~~~lg~-~IkWNF~KFLVd~~G~vv~Ry~ptt~p 158 (171)
T KOG1651|consen 96 RYGAE-FPIFQKIDVNG--------D-NADPLYKFLKKVKGGPLGD-DIKWNFTKFLVDKDGHVVKRFSPTTSP 158 (171)
T ss_pred ccCCC-CccEeEEecCC--------C-CCchHHHHHhhcCCCcccc-cceeeeEEEeECCCCcEEEeeCCCCCc
Confidence 56644 34333333 44 2 5677888998876553332 111256677777666777666665444
No 324
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=90.30 E-value=4.8 Score=32.54 Aligned_cols=87 Identities=17% Similarity=0.242 Sum_probs=59.4
Q ss_pred CCcEEEEEe-cCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcc----------------------------cHhHHHH
Q 019115 73 NRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAKE 122 (346)
Q Consensus 73 ~~~~~v~F~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~~ 122 (346)
++.+++.|| ++.-+-|--+...+.+.+.++++ ++.++.+.+|. +.++|+.
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ 112 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARA 112 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHH
Confidence 455555565 56667788899999999999987 78888887753 4578999
Q ss_pred CCCCCCc------EEEEEe-CCeeeE--Eee--CCCCHHHHHHHHHHH
Q 019115 123 YNILAYP------TLYLFV-AGVRQF--QFF--GERTRDVISAWVREK 159 (346)
Q Consensus 123 ~~i~~~P------t~~~~~-~g~~~~--~~~--g~~~~~~l~~~i~~~ 159 (346)
||+..-. .+++++ +|.+.. .|. -.++.+++.+-++..
T Consensus 113 ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAl 160 (194)
T COG0450 113 YGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDAL 160 (194)
T ss_pred cCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 9876422 456666 774322 232 257888887777644
No 325
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=89.97 E-value=1.6 Score=35.11 Aligned_cols=101 Identities=13% Similarity=0.152 Sum_probs=72.1
Q ss_pred CCCceeccChhHHHHhhccCCeEEEEEecCC---CCccHHHHHHHhccCCceeEEEec---CHHHHhhcCCCCCCCCCeE
Q 019115 161 TLGTYSITTTDEAERILTVESKLVLGFLHDL---EGMESEELAAASKLHSDVNFYQTT---SADVAEFFHIHPKSKRPAL 234 (346)
Q Consensus 161 ~~~~~~i~s~~~~~~~~~~~~~~~v~f~~~~---~~~~~~~~~~~a~~~~~~~f~~~~---~~~~~~~~~v~~~~~~p~i 234 (346)
.....++.++.++-+....+..+++-||.+. |.-...-+..+|+-+-..+|..+. .+=++.+++|.. .|++
T Consensus 65 hG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkV---LP~v 141 (211)
T KOG1672|consen 65 HGEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKV---LPTV 141 (211)
T ss_pred CceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeeeE---eeeE
Confidence 3567888899888888888887888888875 555777788888877888888763 445788999985 9999
Q ss_pred EEEecCCCc--cccCC-----CCCCHHHHHHHHhccC
Q 019115 235 IFLHLEAGK--ATPFR-----HQFTRLAIANFVTHTK 264 (346)
Q Consensus 235 ~~~~~~~~~--~~~y~-----g~~~~~~l~~fi~~~~ 264 (346)
++|+++... ..-|+ .+++++.|.+-|-+..
T Consensus 142 ~l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~~S~ 178 (211)
T KOG1672|consen 142 ALFKNGKTVDYVVGFTDLGNKDDFTTETLENRLAKSG 178 (211)
T ss_pred EEEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHhhcc
Confidence 999987411 11121 2366677776665433
No 326
>PHA03075 glutaredoxin-like protein; Provisional
Probab=89.96 E-value=0.58 Score=34.02 Aligned_cols=36 Identities=11% Similarity=0.337 Sum_probs=29.3
Q ss_pred CcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeC
Q 019115 74 RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA 113 (346)
Q Consensus 74 ~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~ 113 (346)
|.++|.|.-|.|+-|......+.++..+| .+.+||+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY----~ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY----DILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc----cEEEEEe
Confidence 56899999999999999998887776665 4666664
No 327
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=89.76 E-value=1.2 Score=38.70 Aligned_cols=157 Identities=13% Similarity=0.072 Sum_probs=89.2
Q ss_pred CcccHhHHHHCCCCCCcEEEEEeCCeeeEEeeCCCCHHHHHHHHHHHcCCCceeccChhHHHHhh----ccCCeEEEEEe
Q 019115 113 AYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERIL----TVESKLVLGFL 188 (346)
Q Consensus 113 ~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~s~~~~~~~~----~~~~~~~v~f~ 188 (346)
|+-.++.+++++|.-+|-.+.++ |+.... .-..+.+++.+.+.+.-..+-....+..++.+.. ++.+.+++.-.
T Consensus 9 ~dl~~~~~~~~~I~vvPl~I~~~-~~~y~D-~~~i~~~~~y~~~~~~~~~p~TS~ps~~~~~~~~~~l~~~~~~vi~i~i 86 (275)
T TIGR00762 9 ADLPPELIEEYGITVVPLTVIID-GKTYRD-GVDITPEEFYEKLKESKELPKTSQPSPGEFLELYEKLLEEGDEVLSIHL 86 (275)
T ss_pred cCCCHHHHHHcCCEEEEEEEEEC-CEEeec-CCCCCHHHHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHhCCCeEEEEEc
Confidence 44557889999999999988776 433222 1247889999998764333344445655555444 34443333333
Q ss_pred cCCCCccHHHHHHHhccCCceeEEEecCHHHHhhcCCCCCCCCCeEEEEecCCCccccCCCCCCHHHHHHHHhccCCCce
Q 019115 189 HDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLV 268 (346)
Q Consensus 189 ~~~~~~~~~~~~~~a~~~~~~~f~~~~~~~~~~~~~v~~~~~~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~p~~ 268 (346)
...-+..+.....+++..++.++....+..+....+.- +.. -........+.+++.+|++..+.-..
T Consensus 87 Ss~lSgty~~a~~aa~~~~~~~i~ViDS~~~s~~~g~~---------v~~----a~~~~~~G~s~~eI~~~l~~~~~~~~ 153 (275)
T TIGR00762 87 SSGLSGTYQSARQAAEMVDEAKVTVIDSKSASMGLGLL---------VLE----AAKLAEEGKSLEEILAKLEELRERTK 153 (275)
T ss_pred CCchhHHHHHHHHHHhhCCCCCEEEECChHHHHHHHHH---------HHH----HHHHHHcCCCHHHHHHHHHHHHhhcE
Confidence 33334456666666644443345444443333222211 010 01111112478889999988777777
Q ss_pred EeecccchhhhccCCC
Q 019115 269 VTLTIHNAQFVFQDPR 284 (346)
Q Consensus 269 ~~lt~~~~~~~~~~~~ 284 (346)
..+..+++..+..+++
T Consensus 154 ~~f~v~~L~~L~~gGR 169 (275)
T TIGR00762 154 LYFVVDTLEYLVKGGR 169 (275)
T ss_pred EEEEECcHHHHHhcCC
Confidence 7777777777777665
No 328
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=89.31 E-value=4.8 Score=26.89 Aligned_cols=72 Identities=17% Similarity=0.109 Sum_probs=48.9
Q ss_pred EEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcc-cHhHHHHCCCCCCcEEEEEeCCeeeEEeeCCCCHHHHHHHHH
Q 019115 79 MFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVR 157 (346)
Q Consensus 79 ~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~-~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~ 157 (346)
.++.++|+.|++..=.++...- .+.+..++..+ ..++.+...-..+|++. .+|..+ .+...|.+++.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i----~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l------~dS~~I~~yL~ 68 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI----PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVL------TDSAAIIEYLE 68 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE----EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEE------ESHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCC----eEEEeccCcccchhHHHhhcccccceEEE--ECCEEE------eCHHHHHHHHH
Confidence 3678999999997654443211 45566666554 35677777788899996 567432 26788999998
Q ss_pred HHcCC
Q 019115 158 EKMTL 162 (346)
Q Consensus 158 ~~~~~ 162 (346)
+..+.
T Consensus 69 ~~~~~ 73 (75)
T PF13417_consen 69 ERYPG 73 (75)
T ss_dssp HHSTS
T ss_pred HHcCC
Confidence 87654
No 329
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=88.98 E-value=0.42 Score=34.74 Aligned_cols=76 Identities=16% Similarity=0.129 Sum_probs=41.6
Q ss_pred EEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccH----hHHHHCCCCCCcEEEEEe-CCeeeEEe----eCCCC
Q 019115 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK----DLAKEYNILAYPTLYLFV-AGVRQFQF----FGERT 148 (346)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~----~~~~~~~i~~~Pt~~~~~-~g~~~~~~----~g~~~ 148 (346)
..|+.++|+.|++....+++. ++.|-.+|+.+++ ++.+-.+-.+.+.--+++ +|...... ...++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ls 75 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDELS 75 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccCCC
Confidence 468899999999987776653 5666677775532 333333333333333343 33211110 23456
Q ss_pred HHHHHHHHHHH
Q 019115 149 RDVISAWVREK 159 (346)
Q Consensus 149 ~~~l~~~i~~~ 159 (346)
.+++.+++.+.
T Consensus 76 ~~e~~~~l~~~ 86 (105)
T cd02977 76 DEEALELMAEH 86 (105)
T ss_pred HHHHHHHHHhC
Confidence 66666666544
No 330
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=88.94 E-value=5.3 Score=26.88 Aligned_cols=70 Identities=10% Similarity=0.071 Sum_probs=40.7
Q ss_pred EEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCccc----HhHHHHCCCCCCcEEEEEeCCeeeEEeeCCCCHHHHH
Q 019115 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE----KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVIS 153 (346)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~----~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 153 (346)
..++.++|+.|++.+-.+.+. ++.+-.+++... +++.+.-+-..+|++..-++|.. -.+...|.
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~------gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~------l~es~~I~ 70 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTEL------ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQ------MFESADIV 70 (77)
T ss_pred eEecCCCCchHHHHHHHHHHc------CCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeE------EEcHHHHH
Confidence 456778999999876655543 344444555432 23434445567898743223411 23557777
Q ss_pred HHHHHH
Q 019115 154 AWVREK 159 (346)
Q Consensus 154 ~~i~~~ 159 (346)
+|+.+.
T Consensus 71 ~yL~~~ 76 (77)
T cd03041 71 KYLFKT 76 (77)
T ss_pred HHHHHh
Confidence 777653
No 331
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=87.88 E-value=2.6 Score=44.10 Aligned_cols=81 Identities=9% Similarity=0.033 Sum_probs=55.1
Q ss_pred cCCeEEEEEecCCCCccHH---HHHHHh-ccCCc-eeEEEe------------------------------cCHHHHhhc
Q 019115 179 VESKLVLGFLHDLEGMESE---ELAAAS-KLHSD-VNFYQT------------------------------TSADVAEFF 223 (346)
Q Consensus 179 ~~~~~~v~f~~~~~~~~~~---~~~~~a-~~~~~-~~f~~~------------------------------~~~~~~~~~ 223 (346)
..++++|.|+.+||.+... .+.++. ++.++ +.+..+ .+..+.+.|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 3678999999999998544 444444 33332 332221 123466778
Q ss_pred CCCCCCCCCeEEEEecCCCccccCCCCCCHHHHHHHHhc
Q 019115 224 HIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTH 262 (346)
Q Consensus 224 ~v~~~~~~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~ 262 (346)
++. +.|+.+++.+++.....+.|+...+.|.++|..
T Consensus 499 ~V~---~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~ 534 (1057)
T PLN02919 499 GVS---SWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEA 534 (1057)
T ss_pred CCC---ccceEEEECCCCeEEEEEecccCHHHHHHHHHH
Confidence 887 699999997665556668898888888888874
No 332
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.79 E-value=1.8 Score=28.80 Aligned_cols=56 Identities=18% Similarity=0.155 Sum_probs=37.7
Q ss_pred EEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccH----------------hHHHHCCCCCCcEEEEEeCCeee
Q 019115 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK----------------DLAKEYNILAYPTLYLFVAGVRQ 140 (346)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~----------------~~~~~~~i~~~Pt~~~~~~g~~~ 140 (346)
+.|++-.||.|..+..+++++ ++.+-.|++.+.. +-++..|--|+|.+.+ ++|+++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl------~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~vV 76 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL------NVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGKVV 76 (85)
T ss_pred eeeccccCcchHHHHHHHHHc------CCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCcEE
Confidence 789999999998887777765 3445556654321 2245667788999854 455443
No 333
>PF13728 TraF: F plasmid transfer operon protein
Probab=86.78 E-value=4.8 Score=33.53 Aligned_cols=76 Identities=9% Similarity=-0.032 Sum_probs=49.3
Q ss_pred CCeEEEEEecCCCCcc---HHHHHHHhccCCceeEEEe-------------cCHHHHhhcCCCCCCCCCeEEEEecCCCc
Q 019115 180 ESKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQT-------------TSADVAEFFHIHPKSKRPALIFLHLEAGK 243 (346)
Q Consensus 180 ~~~~~v~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~-------------~~~~~~~~~~v~~~~~~p~i~~~~~~~~~ 243 (346)
++..+++||.+.|..+ .+.+...+.-.+--.+... .+..+++.+++. ..|++++..+++..
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~---~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVK---VTPALFLVNPNTKK 196 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCC---cCCEEEEEECCCCe
Confidence 5667888999988864 3334444432222222222 247899999998 48999999887633
Q ss_pred c-ccCCCCCCHHHHHH
Q 019115 244 A-TPFRHQFTRLAIAN 258 (346)
Q Consensus 244 ~-~~y~g~~~~~~l~~ 258 (346)
. ..-.|-.+.++|.+
T Consensus 197 ~~pv~~G~~s~~~L~~ 212 (215)
T PF13728_consen 197 WYPVSQGFMSLDELED 212 (215)
T ss_pred EEEEeeecCCHHHHHH
Confidence 3 33357788877765
No 334
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=86.39 E-value=2.9 Score=27.58 Aligned_cols=55 Identities=15% Similarity=0.182 Sum_probs=35.1
Q ss_pred EEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcc-cHhHHHHCCCCCCcEEEEEeCC
Q 019115 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-EKDLAKEYNILAYPTLYLFVAG 137 (346)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~-~~~~~~~~~i~~~Pt~~~~~~g 137 (346)
+.|+.+||++|++.+-.+.+..- .+....+|... .+++.+......+|++.. ++|
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl----~~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g 57 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI----TVELREVELKNKPAEMLAASPKGTVPVLVL-GNG 57 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC----CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCC
Confidence 45778999999987655554321 45566666543 345666666778999843 345
No 335
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=86.28 E-value=3.7 Score=27.50 Aligned_cols=72 Identities=14% Similarity=0.143 Sum_probs=42.4
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCc--ccHhHHHHCCCCCCcEEEEEe--CCeeeEEeeCCCCHHHH
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY--LEKDLAKEYNILAYPTLYLFV--AGVRQFQFFGERTRDVI 152 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~--~~~~~~~~~~i~~~Pt~~~~~--~g~~~~~~~g~~~~~~l 152 (346)
+..|+.+.|+.|++.+-.+.+. ++.+-.++.+ ...++ +.-+-..+|++..=+ +|.. -.+...|
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~------gi~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~------l~eS~~I 68 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH------GIPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQ------LVDSSVI 68 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC------CCceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccE------EEcHHHH
Confidence 3457789999999988555543 3333333333 22333 334556799886532 2321 2356788
Q ss_pred HHHHHHHcC
Q 019115 153 SAWVREKMT 161 (346)
Q Consensus 153 ~~~i~~~~~ 161 (346)
.+|+.+.++
T Consensus 69 ~~yL~~~~~ 77 (77)
T cd03040 69 ISTLKTYLG 77 (77)
T ss_pred HHHHHHHcC
Confidence 888887653
No 336
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=86.24 E-value=11 Score=27.34 Aligned_cols=87 Identities=11% Similarity=0.098 Sum_probs=66.5
Q ss_pred CCcEEEEEecCCChhHhhhhHHHHHHHHHccC--CcEEEEEeCcccHhHH----HHCCCC-CCcEEEEEe--CC-eeeEE
Q 019115 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLA----KEYNIL-AYPTLYLFV--AG-VRQFQ 142 (346)
Q Consensus 73 ~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~--~v~~~~v~~~~~~~~~----~~~~i~-~~Pt~~~~~--~g-~~~~~ 142 (346)
+...+|-|--+--+.-.++.+.++++|+.+.+ ++.++-||-++-+-+. +.|+|. .-|.+-+++ +. .+...
T Consensus 20 ~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~~ 99 (120)
T cd03074 20 DGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWME 99 (120)
T ss_pred CCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeEe
Confidence 46678888888889999999999999999876 8999999999887654 345654 359998887 22 23334
Q ss_pred eeCC---CCHHHHHHHHHHH
Q 019115 143 FFGE---RTRDVISAWVREK 159 (346)
Q Consensus 143 ~~g~---~~~~~l~~~i~~~ 159 (346)
-.+. .+.+++.+||+..
T Consensus 100 m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 100 MDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred cccccccCcHHHHHHHHHhh
Confidence 4343 6889999999865
No 337
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=86.11 E-value=7.3 Score=35.36 Aligned_cols=90 Identities=14% Similarity=0.127 Sum_probs=63.1
Q ss_pred cCCCcEEEEEecCCChhHhhhh--HHHHHHHHH-ccCCcEEEEEeCc--ccHhHHHHCCCCCCcEEEEEe-CCeeeEEee
Q 019115 71 GKNRNVMVMFYANWCYWSKKLA--PEFAAAAKM-LKGEADLVMVDAY--LEKDLAKEYNILAYPTLYLFV-AGVRQFQFF 144 (346)
Q Consensus 71 ~~~~~~~v~F~a~wC~~C~~~~--p~~~~~~~~-~~~~v~~~~v~~~--~~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~ 144 (346)
+.++.+||.|-+......+++. -.++..... .-..+.-++|+.. ....++.-|.+..+|.++++. .|..+....
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevit 95 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVIT 95 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEee
Confidence 4567788888888777777776 333333222 2223444455443 234677778899999999998 888899999
Q ss_pred CCCCHHHHHHHHHHHc
Q 019115 145 GERTRDVISAWVREKM 160 (346)
Q Consensus 145 g~~~~~~l~~~i~~~~ 160 (346)
|...+++|..-|.+..
T Consensus 96 g~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 96 GFVTADELASSIEKVW 111 (506)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999988887753
No 338
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=85.87 E-value=1.2 Score=32.63 Aligned_cols=57 Identities=14% Similarity=0.175 Sum_probs=45.3
Q ss_pred cEEcChhcHHHHHcCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcc
Q 019115 58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL 115 (346)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~ 115 (346)
+.+++++.++....++++++|.=-|+-|+.-. ....++++.++|++ ++.++..=|.+
T Consensus 6 ~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 6 AKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp EEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred eeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 34455555554446899999999999999988 67799999999986 88898888864
No 339
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=85.42 E-value=4 Score=31.95 Aligned_cols=81 Identities=22% Similarity=0.312 Sum_probs=45.4
Q ss_pred CcEEcChhcHH-HHHcCCCcEEEEEe-cCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcc------------------
Q 019115 57 DVVSLNGKNFS-EFMGKNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL------------------ 115 (346)
Q Consensus 57 ~v~~l~~~~~~-~~~~~~~~~~v~F~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~------------------ 115 (346)
.+.+-+++.+. +.+..++++++.|| +..-|-|-+..=.|..-+++++. ...+..+..|.
T Consensus 73 tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sqKaF~sKqnlPYhLL 152 (211)
T KOG0855|consen 73 TLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQKAFASKQNLPYHLL 152 (211)
T ss_pred ccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHHHHHhhhhccCCeeee
Confidence 44444444444 33456678999998 34445666655555555555544 45555554432
Q ss_pred ---cHhHHHHCCCCCCc-------EEEEEeCC
Q 019115 116 ---EKDLAKEYNILAYP-------TLYLFVAG 137 (346)
Q Consensus 116 ---~~~~~~~~~i~~~P-------t~~~~~~g 137 (346)
..++.+.+|....| +.++|.+|
T Consensus 153 SDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg 184 (211)
T KOG0855|consen 153 SDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKG 184 (211)
T ss_pred cCcchhHHHHhCCCCCCCCCcccceEEEEecC
Confidence 34566677766644 45666644
No 340
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=85.38 E-value=16 Score=29.78 Aligned_cols=100 Identities=15% Similarity=0.193 Sum_probs=61.7
Q ss_pred CCCceeccChhHHHHhhcc-CCeEEEEE-ecC---CCCccHHHHHHHhccCCceeEEEecCHHHHhhcCCCCCCCCCeEE
Q 019115 161 TLGTYSITTTDEAERILTV-ESKLVLGF-LHD---LEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALI 235 (346)
Q Consensus 161 ~~~~~~i~s~~~~~~~~~~-~~~~~v~f-~~~---~~~~~~~~~~~~a~~~~~~~f~~~~~~~~~~~~~v~~~~~~p~i~ 235 (346)
-..|.+|+-.+-.++.... ..+|||.. |.. .|.-....+..+|...+.++|..+........|--. ..|||+
T Consensus 90 fG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~cIpNYPe~---nlPTl~ 166 (240)
T KOG3170|consen 90 FGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTCIPNYPES---NLPTLL 166 (240)
T ss_pred ccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccccCCCccc---CCCeEE
Confidence 3567777665555555433 45566553 332 223355566777877899999987666555555544 489999
Q ss_pred EEecCCCc-----cccCCCC-CCHHHHHHHHhcc
Q 019115 236 FLHLEAGK-----ATPFRHQ-FTRLAIANFVTHT 263 (346)
Q Consensus 236 ~~~~~~~~-----~~~y~g~-~~~~~l~~fi~~~ 263 (346)
+|..+.-+ ...+.|. .+.+++..++-+.
T Consensus 167 VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 167 VYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred EeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 99987522 2334443 5668888887643
No 341
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=85.16 E-value=1.6 Score=33.27 Aligned_cols=35 Identities=9% Similarity=0.169 Sum_probs=25.4
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccH
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK 117 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~ 117 (346)
+..|+.++|+.|++....+++- ++.+-.+|+.+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~------gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH------DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCcEEeeccCCh
Confidence 4567889999999987666542 5677777776554
No 342
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=85.03 E-value=1.8 Score=32.13 Aligned_cols=34 Identities=15% Similarity=0.103 Sum_probs=26.0
Q ss_pred EEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccH
Q 019115 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK 117 (346)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~ 117 (346)
..|+.++|+.|++....+++- ++.+-.+|+.+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN------GIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCceEEEecCCCh
Confidence 357899999999988777652 5677778877654
No 343
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=84.90 E-value=4.6 Score=28.91 Aligned_cols=19 Identities=11% Similarity=0.039 Sum_probs=12.7
Q ss_pred CCeEEEEEecCCCCccHHH
Q 019115 180 ESKLVLGFLHDLEGMESEE 198 (346)
Q Consensus 180 ~~~~~v~f~~~~~~~~~~~ 198 (346)
.+.+++.|+.+||......
T Consensus 19 ~k~~ll~f~~~~C~~C~~~ 37 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAE 37 (116)
T ss_pred CCEEEEEeecccChhHHHH
Confidence 4567777788887764433
No 344
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=84.56 E-value=1.3 Score=32.59 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=33.2
Q ss_pred EEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccH----hHHHHCCCCCCcEEEEEe
Q 019115 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK----DLAKEYNILAYPTLYLFV 135 (346)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~----~~~~~~~i~~~Pt~~~~~ 135 (346)
..|+.++|+.|++....+++- ++.|-.+|..+++ ++.+-.+-.+.|..-+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~ 57 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFN 57 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHh
Confidence 457899999999988776652 5677777776543 233333334455555555
No 345
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=84.38 E-value=1.3 Score=32.21 Aligned_cols=33 Identities=15% Similarity=0.082 Sum_probs=24.4
Q ss_pred EEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCccc
Q 019115 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116 (346)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~ 116 (346)
..|+.|+|+.|++....+++- ++.+-.+|..++
T Consensus 2 ~iy~~~~C~~crka~~~L~~~------~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR------GVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCCeEEEecccC
Confidence 468899999999987666643 566667776654
No 346
>PHA02125 thioredoxin-like protein
Probab=83.39 E-value=2.9 Score=28.06 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=30.3
Q ss_pred EEEEecCCCCccHHHHHHHhccC-CceeEEEecCHHHHhhcCCCCCCCCCeEE
Q 019115 184 VLGFLHDLEGMESEELAAASKLH-SDVNFYQTTSADVAEFFHIHPKSKRPALI 235 (346)
Q Consensus 184 ~v~f~~~~~~~~~~~~~~~a~~~-~~~~f~~~~~~~~~~~~~v~~~~~~p~i~ 235 (346)
++.|+.+||++....-..+.+.. ..+.+....+.++++.|++. +.|+++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~~~~~~vd~~~~~~l~~~~~v~---~~PT~~ 51 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVEYTYVDVDTDEGVELTAKHHIR---SLPTLV 51 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHhheEEeeeCCCCHHHHHHcCCc---eeCeEE
Confidence 57899999998543322222111 11222223567899999998 599987
No 347
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=83.24 E-value=0.57 Score=38.78 Aligned_cols=93 Identities=12% Similarity=0.122 Sum_probs=64.1
Q ss_pred ChhHHHHhhccCCeEEEEEecCCCCc---cHHHHHHHhccCC--ceeEE---EecCHHHHhhcCCCCCCCCCeEEEEecC
Q 019115 169 TTDEAERILTVESKLVLGFLHDLEGM---ESEELAAASKLHS--DVNFY---QTTSADVAEFFHIHPKSKRPALIFLHLE 240 (346)
Q Consensus 169 s~~~~~~~~~~~~~~~v~f~~~~~~~---~~~~~~~~a~~~~--~~~f~---~~~~~~~~~~~~v~~~~~~p~i~~~~~~ 240 (346)
+++....++.. -+++.|+.+||.. ....+...|.... .+.++ .+.++.+.-.|-+.. .|+|+--+++
T Consensus 30 ~eenw~~~l~g--ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vta---LptIYHvkDG 104 (248)
T KOG0913|consen 30 DEENWKELLTG--EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTA---LPTIYHVKDG 104 (248)
T ss_pred cccchhhhhch--HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEe---cceEEEeecc
Confidence 55666666543 3777888888865 4444444453222 23333 468888888888884 8987766654
Q ss_pred CCccccCCCCCCHHHHHHHHhccCCCce
Q 019115 241 AGKATPFRHQFTRLAIANFVTHTKHPLV 268 (346)
Q Consensus 241 ~~~~~~y~g~~~~~~l~~fi~~~~~p~~ 268 (346)
.+-.|.|.++.+++.+|+.......+
T Consensus 105 --eFrrysgaRdk~dfisf~~~r~w~~i 130 (248)
T KOG0913|consen 105 --EFRRYSGARDKNDFISFEEHREWQSI 130 (248)
T ss_pred --ccccccCcccchhHHHHHHhhhhhcc
Confidence 89999999999999999987665444
No 348
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=82.21 E-value=4.2 Score=32.75 Aligned_cols=76 Identities=11% Similarity=0.071 Sum_probs=47.3
Q ss_pred EEEEecCCCCccHHH---HHHHhccCCceeE-EEe---------------cCHHHHhhcCC-CCCCCCCeEEEEecCCCc
Q 019115 184 VLGFLHDLEGMESEE---LAAASKLHSDVNF-YQT---------------TSADVAEFFHI-HPKSKRPALIFLHLEAGK 243 (346)
Q Consensus 184 ~v~f~~~~~~~~~~~---~~~~a~~~~~~~f-~~~---------------~~~~~~~~~~v-~~~~~~p~i~~~~~~~~~ 243 (346)
+|.|+.+||.+..+. +.++++..+ +.+ +.. ....+.+.|++ . .++|+.+++.+++..
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g-~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~--~~iPttfLId~~G~i 149 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIP--VATPTTFLVNVNTLE 149 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC-CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCC--CCCCeEEEEeCCCcE
Confidence 666899999885444 344442222 222 111 12346678884 2 158999999877654
Q ss_pred c-ccCCCCCCHHHHHHHHhc
Q 019115 244 A-TPFRHQFTRLAIANFVTH 262 (346)
Q Consensus 244 ~-~~y~g~~~~~~l~~fi~~ 262 (346)
. ..+.|..+.+++.+.|..
T Consensus 150 ~~~~~~G~~~~~~L~~~I~~ 169 (181)
T PRK13728 150 ALPLLQGATDAAGFMARMDT 169 (181)
T ss_pred EEEEEECCCCHHHHHHHHHH
Confidence 3 468899998888777753
No 349
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=82.06 E-value=9.4 Score=27.70 Aligned_cols=34 Identities=9% Similarity=-0.043 Sum_probs=20.2
Q ss_pred CCeEEEEEecCCCCccHHH---HHHHh-ccCCceeEEE
Q 019115 180 ESKLVLGFLHDLEGMESEE---LAAAS-KLHSDVNFYQ 213 (346)
Q Consensus 180 ~~~~~v~f~~~~~~~~~~~---~~~~a-~~~~~~~f~~ 213 (346)
.++++|.|+.+||...... +.+++ .+.+++.+..
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~ 58 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVL 58 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEE
Confidence 5678888899999884433 34443 2334454443
No 350
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=81.14 E-value=3.7 Score=34.21 Aligned_cols=43 Identities=21% Similarity=0.303 Sum_probs=34.8
Q ss_pred hHHHHCCCCCCcEEEEEeCCeeeEEeeCCCCHHHHHHHHHHHcCCCc
Q 019115 118 DLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGT 164 (346)
Q Consensus 118 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~ 164 (346)
..+++.||+++|++++ ++| ....|..+.+.+.+-|.+.++...
T Consensus 175 ~~A~e~gI~gVP~fv~-d~~---~~V~Gaq~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 175 AAAQEMGIRGVPTFVF-DGK---YAVSGAQPYDVLEDALRQLLAEKA 217 (225)
T ss_pred HHHHHCCCccCceEEE-cCc---EeecCCCCHHHHHHHHHHHHhccc
Confidence 4678899999999988 333 566799999999999999886443
No 351
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=81.00 E-value=2.6 Score=30.69 Aligned_cols=73 Identities=19% Similarity=0.266 Sum_probs=52.8
Q ss_pred eEeecccchhhhccCCCcEEEEEeeCCC----chHHHHHHHHHHHHhcCceEEEEEECCCcccccchhhhcCCCCCCCcc
Q 019115 268 VVTLTIHNAQFVFQDPRKQLWLFAPAYG----SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVSGNAPRV 343 (346)
Q Consensus 268 ~~~lt~~~~~~~~~~~~~~~~~f~~~~~----~~~~~~~~~~~a~~~~~~~~f~~vd~~~~~~~~~~~~~~gi~~~~~P~ 343 (346)
+++++.+++..+...+...+++|..+.. ..+..-++=++.+.+.+.+..+.++...+ ..+...||+. ..|+
T Consensus 11 ~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e---~~L~~r~gv~--~~Pa 85 (107)
T PF07449_consen 11 WPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAE---RALAARFGVR--RWPA 85 (107)
T ss_dssp EEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHH---HHHHHHHT-T--SSSE
T ss_pred CeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhH---HHHHHHhCCc--cCCe
Confidence 5566677788877777777777776543 55666688899999999999999986554 4899999985 4676
Q ss_pred cc
Q 019115 344 SS 345 (346)
Q Consensus 344 ~~ 345 (346)
++
T Consensus 86 Lv 87 (107)
T PF07449_consen 86 LV 87 (107)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 352
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=80.82 E-value=4 Score=30.91 Aligned_cols=45 Identities=13% Similarity=0.242 Sum_probs=34.8
Q ss_pred ccHhHHHHCCCCCCcEEEEEeCCe-----------eeEEeeCCCCHHHHHHHHHHH
Q 019115 115 LEKDLAKEYNILAYPTLYLFVAGV-----------RQFQFFGERTRDVISAWVREK 159 (346)
Q Consensus 115 ~~~~~~~~~~i~~~Pt~~~~~~g~-----------~~~~~~g~~~~~~l~~~i~~~ 159 (346)
=+|.+-++|+|+.+|++++.+++. ......|..+.+.-.+.+.+.
T Consensus 59 IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~ 114 (130)
T TIGR02742 59 IDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQD 114 (130)
T ss_pred EChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHh
Confidence 368999999999999999998663 245566888877777766644
No 353
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=80.45 E-value=5.8 Score=29.83 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=16.8
Q ss_pred HHHHhhcCCCCCCCCCeEEEEecCC
Q 019115 217 ADVAEFFHIHPKSKRPALIFLHLEA 241 (346)
Q Consensus 217 ~~~~~~~~v~~~~~~p~i~~~~~~~ 241 (346)
..+++.|++. +.|+++++.+++
T Consensus 89 ~~~~~~~~v~---~~P~~~lid~~G 110 (131)
T cd03009 89 SRLNRTFKIE---GIPTLIILDADG 110 (131)
T ss_pred HHHHHHcCCC---CCCEEEEECCCC
Confidence 3567788887 589999997654
No 354
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.13 E-value=26 Score=27.38 Aligned_cols=81 Identities=15% Similarity=0.227 Sum_probs=49.7
Q ss_pred hHHHHhhccCCeEEEEEecCCCCccHH---------HHHHHhccCCceeEEE-------------------ecCHHHHhh
Q 019115 171 DEAERILTVESKLVLGFLHDLEGMESE---------ELAAASKLHSDVNFYQ-------------------TTSADVAEF 222 (346)
Q Consensus 171 ~~~~~~~~~~~~~~v~f~~~~~~~~~~---------~~~~~a~~~~~~~f~~-------------------~~~~~~~~~ 222 (346)
++.+....+++..+++|-.+.|....+ .++++ +.+++.++. .+..++++.
T Consensus 33 ~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEy--lk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~k 110 (182)
T COG2143 33 DDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREY--LKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQK 110 (182)
T ss_pred HHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHH--HhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHH
Confidence 444555566788888888888865221 12222 222222221 244589999
Q ss_pred cCCCCCCCCCeEEEEecCCCccccCCCCCCHHHH
Q 019115 223 FHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAI 256 (346)
Q Consensus 223 ~~v~~~~~~p~i~~~~~~~~~~~~y~g~~~~~~l 256 (346)
|+++ +.|++++|...++.-....|-+..+..
T Consensus 111 f~vr---stPtfvFfdk~Gk~Il~lPGY~ppe~F 141 (182)
T COG2143 111 FAVR---STPTFVFFDKTGKTILELPGYMPPEQF 141 (182)
T ss_pred hccc---cCceEEEEcCCCCEEEecCCCCCHHHH
Confidence 9999 589999998776555555676666543
No 355
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=79.93 E-value=3.8 Score=33.10 Aligned_cols=44 Identities=20% Similarity=0.214 Sum_probs=33.9
Q ss_pred HhHHHHCCCCCCcEEEEEeCCeeeEEeeC--CCCHHHHHHHHHHHc
Q 019115 117 KDLAKEYNILAYPTLYLFVAGVRQFQFFG--ERTRDVISAWVREKM 160 (346)
Q Consensus 117 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g--~~~~~~l~~~i~~~~ 160 (346)
..+++++++.++||+.+-++|+....=.| ..+.+.+..++.+.+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 46789999999999999999964443345 356788888887764
No 356
>PRK12559 transcriptional regulator Spx; Provisional
Probab=79.34 E-value=3.2 Score=31.56 Aligned_cols=34 Identities=12% Similarity=0.170 Sum_probs=24.3
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCccc
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~ 116 (346)
+..|+.++|+.|++....+++- ++.+-.+|..++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN------QIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCeEEEEeeCC
Confidence 4568899999999987666542 566666776554
No 357
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=78.55 E-value=0.92 Score=31.23 Aligned_cols=52 Identities=25% Similarity=0.280 Sum_probs=41.9
Q ss_pred ecCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcccHhHHHHCCCCCCcEEE
Q 019115 81 YANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLY 132 (346)
Q Consensus 81 ~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~ 132 (346)
-+..-+........+..+.+...+ .+.+-.||+.+++++++.++|-.+||++
T Consensus 4 V~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 4 VAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp ESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred ECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 344445667777888888777544 8899999999999999999999999964
No 358
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=78.34 E-value=10 Score=25.48 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=39.7
Q ss_pred ecCCCCccHH---HHHHHh-ccCCceeEEEecCHHHHhhcCCCCCCCCCeEEEEecCCCccccCCC-CCCHHHHHHHHh
Q 019115 188 LHDLEGMESE---ELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRH-QFTRLAIANFVT 261 (346)
Q Consensus 188 ~~~~~~~~~~---~~~~~a-~~~~~~~f~~~~~~~~~~~~~v~~~~~~p~i~~~~~~~~~~~~y~g-~~~~~~l~~fi~ 261 (346)
+.+.|..... .+.+++ .+.-++.+....+.+-..+||+. +.|++++ + ....|.| -.+.++|.+||+
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~~~~~~~~ygv~---~vPalvI----n-g~~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELGIEVEIIDIEDFEEIEKYGVM---SVPALVI----N-GKVVFVGRVPSKEELKELLE 76 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTTEEEEEEETTTHHHHHHTT-S---SSSEEEE----T-TEEEEESS--HHHHHHHHHH
T ss_pred eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccCHHHHHHcCCC---CCCEEEE----C-CEEEEEecCCCHHHHHHHhC
Confidence 5666877443 334444 33333344445555555999998 5899975 2 3467888 556689999885
No 359
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=78.21 E-value=3.5 Score=34.35 Aligned_cols=44 Identities=14% Similarity=0.261 Sum_probs=37.2
Q ss_pred cCCCcEEEEEecCCChhHhhhhHHHHHHHHHccC----CcEEEEEeCc
Q 019115 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG----EADLVMVDAY 114 (346)
Q Consensus 71 ~~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~----~v~~~~v~~~ 114 (346)
..|++++|-+-..+|..|...+..++.|..++.. +|.|+.||-.
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 3678999999999999999999999999877754 7888888843
No 360
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=77.60 E-value=1.7 Score=37.99 Aligned_cols=155 Identities=14% Similarity=0.123 Sum_probs=81.1
Q ss_pred CcccHhHHHHCCCCCCcEEEEEeCCeeeEEee-C-CCCHHHHHHHHHHHcCCCceeccChhHHHHhhc-----cCCeEEE
Q 019115 113 AYLEKDLAKEYNILAYPTLYLFVAGVRQFQFF-G-ERTRDVISAWVREKMTLGTYSITTTDEAERILT-----VESKLVL 185 (346)
Q Consensus 113 ~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~-g-~~~~~~l~~~i~~~~~~~~~~i~s~~~~~~~~~-----~~~~~~v 185 (346)
|+-.+++.++++|.-+|-.+.+++. .|. | ..+.+++.+.+.+.-..+-+.-.+..++.+..+ ..+..+.
T Consensus 10 ~dl~~~~~~~~~i~vvPl~i~~~~~----~y~D~~~i~~~efy~~l~~~~~~p~TS~ps~~~~~~~f~~~~~~gyd~ii~ 85 (280)
T PF02645_consen 10 SDLPPELAEEYGIYVVPLNIIIDGK----EYRDGVDISPEEFYEKLRESGEIPKTSQPSPGEFEEAFEKLLEEGYDEIIV 85 (280)
T ss_dssp G---HHHHHHTTEEEE--EEEETTE----EEETTTTSCHHHHHHHHHHTTSEEEEE---HHHHHHHHHHHHHTTTSEEEE
T ss_pred CCCCHHHHHhCCeEEEeEEEecCCe----EEecCCCCCHHHHHHHHHhcCCCceecCCCHHHHHHHHHHHHHCCCCeEEE
Confidence 3445788999999999998887752 233 4 678999999986654333355556666655543 2343444
Q ss_pred EEecCCCCccHHHHHHHhccCCceeEEEecCHHHHhhcCCCCCCCCCeEEEEecCCCccccCCCCCCHHHHHHHHhccCC
Q 019115 186 GFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKH 265 (346)
Q Consensus 186 ~f~~~~~~~~~~~~~~~a~~~~~~~f~~~~~~~~~~~~~v~~~~~~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~ 265 (346)
....+.-+..++....+++..++.++....+..+.-..+. ++.+. ....-.| .+.+++.++++..+.
T Consensus 86 i~iSs~LSgty~~a~~aa~~~~~~~i~ViDS~~~s~g~g~---------lv~~a---~~l~~~G-~s~~ei~~~l~~~~~ 152 (280)
T PF02645_consen 86 ITISSGLSGTYNSARLAAKMLPDIKIHVIDSKSVSAGQGL---------LVLEA---AKLIEQG-KSFEEIVEKLEELRE 152 (280)
T ss_dssp EES-TTT-THHHHHHHHHHHHTTTEEEEEE-SS-HHHHHH---------HHHHH---HHHHHTT---HHHHHHHHHHHHH
T ss_pred EeCCcchhhHHHHHHHHHhhcCcCEEEEEeCCCcchhhhH---------HHHHH---HHHHHcC-CCHHHHHHHHHHHHh
Confidence 4445555566676666664333344433322221111111 00100 0000112 377889999987777
Q ss_pred CceEeecccchhhhccCCC
Q 019115 266 PLVVTLTIHNAQFVFQDPR 284 (346)
Q Consensus 266 p~~~~lt~~~~~~~~~~~~ 284 (346)
-....+..+++..+..+++
T Consensus 153 ~~~~~f~~~~L~~L~kgGR 171 (280)
T PF02645_consen 153 RTRTYFVVDDLKYLRKGGR 171 (280)
T ss_dssp TEEEEEEES-SHHHHHCTS
T ss_pred hceEEEEechHHHHHHCCC
Confidence 7777777777777776665
No 361
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=77.41 E-value=6.4 Score=25.84 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=33.1
Q ss_pred EEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcc----cHhHHHHCCCCCCcEEEE
Q 019115 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL----EKDLAKEYNILAYPTLYL 133 (346)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~----~~~~~~~~~i~~~Pt~~~ 133 (346)
..|+.++|++|++.+-.+....- ......++... .+++.+...-..+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l----~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGI----DVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCC----CceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 35778899999998766655422 34445555422 345555566678899854
No 362
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=77.37 E-value=47 Score=28.69 Aligned_cols=75 Identities=16% Similarity=0.123 Sum_probs=45.7
Q ss_pred CCCcEEcChhcHHHHHcCCCcEEEEEecCCC-hh-HhhhhHHHHHHHHHc----cCCcEEEEEeCcccHhHHHH----CC
Q 019115 55 AKDVVSLNGKNFSEFMGKNRNVMVMFYANWC-YW-SKKLAPEFAAAAKML----KGEADLVMVDAYLEKDLAKE----YN 124 (346)
Q Consensus 55 ~~~v~~l~~~~~~~~~~~~~~~~v~F~a~wC-~~-C~~~~p~~~~~~~~~----~~~v~~~~v~~~~~~~~~~~----~~ 124 (346)
.+...+|++.+-+-+-.=++++-|.+|.+-- +. -....+.+.++-++| ++++.+-.||-+.+++.+++ +|
T Consensus 6 ~~k~ysLS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~G 85 (271)
T PF09822_consen 6 ANKRYSLSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYG 85 (271)
T ss_pred CCCCccCCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcC
Confidence 4466677777776555556677777776541 11 233333333333333 33799999999777766665 88
Q ss_pred CCCCc
Q 019115 125 ILAYP 129 (346)
Q Consensus 125 i~~~P 129 (346)
|...+
T Consensus 86 i~~~~ 90 (271)
T PF09822_consen 86 IQPVQ 90 (271)
T ss_pred CCccc
Confidence 87744
No 363
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=77.20 E-value=4.8 Score=29.71 Aligned_cols=33 Identities=6% Similarity=0.109 Sum_probs=24.3
Q ss_pred EEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCccc
Q 019115 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116 (346)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~ 116 (346)
..|+.++|+.|++....+++. ++.+-.+|..++
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~~------gi~~~~idi~~~ 35 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEEH------QIPFEERNLFKQ 35 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHHC------CCceEEEecCCC
Confidence 457789999999987777652 566667777554
No 364
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=77.13 E-value=8.5 Score=24.46 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=33.1
Q ss_pred EEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccH--hHHHHCCCCCCcEEEEEeCCe
Q 019115 79 MFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK--DLAKEYNILAYPTLYLFVAGV 138 (346)
Q Consensus 79 ~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~--~~~~~~~i~~~Pt~~~~~~g~ 138 (346)
.|+.++|+.|++..-.++...- .+....++..... ++-+..+-..+|++.. +|.
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~--~~~ 58 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGL----PYELVPVDLGEGEQEEFLALNPLGKVPVLED--GGL 58 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCC----CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE--CCE
Confidence 5778899999987766665422 3444455543322 2455566778998754 453
No 365
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=77.08 E-value=18 Score=29.74 Aligned_cols=100 Identities=13% Similarity=0.150 Sum_probs=65.3
Q ss_pred CceeccChhHHHHhhccC-C--eEEEEEecCC---CCccHHHHHHHhccCCceeEEEe--cCHHHHhhcCCCCCCCCCeE
Q 019115 163 GTYSITTTDEAERILTVE-S--KLVLGFLHDL---EGMESEELAAASKLHSDVNFYQT--TSADVAEFFHIHPKSKRPAL 234 (346)
Q Consensus 163 ~~~~i~s~~~~~~~~~~~-~--~~~v~f~~~~---~~~~~~~~~~~a~~~~~~~f~~~--~~~~~~~~~~v~~~~~~p~i 234 (346)
.|.++.+-.++-..++.. + ..+|..|.+. |..+...+.-+|.-.+.++|-.+ ++....+.|..+ ..|++
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~gas~~F~~n---~lP~L 215 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNTGASDRFSLN---VLPTL 215 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeeccccchhhhccc---CCceE
Confidence 477888888877777543 2 3344456543 33355555666655688888765 444567888887 58999
Q ss_pred EEEecCCC--cc----ccCCCCCCHHHHHHHHhccCC
Q 019115 235 IFLHLEAG--KA----TPFRHQFTRLAIANFVTHTKH 265 (346)
Q Consensus 235 ~~~~~~~~--~~----~~y~g~~~~~~l~~fi~~~~~ 265 (346)
.+|+.+.- .+ ..+..++...++..|++...+
T Consensus 216 liYkgGeLIgNFv~va~qlgedffa~dle~FL~e~gl 252 (273)
T KOG3171|consen 216 LIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYGL 252 (273)
T ss_pred EEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcCC
Confidence 99997741 12 223345677889999987654
No 366
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=75.37 E-value=11 Score=27.70 Aligned_cols=45 Identities=20% Similarity=0.369 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeC
Q 019115 90 KLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136 (346)
Q Consensus 90 ~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 136 (346)
.+.+....+.+...+.-.. .++.=+|.+-++|+|+.+|++++.++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~--~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC--PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC--cceeEChhHHhhCCceEcCEEEEEcC
Confidence 4555555554444331111 23333689999999999999999887
No 367
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=75.35 E-value=34 Score=26.15 Aligned_cols=90 Identities=10% Similarity=0.037 Sum_probs=60.7
Q ss_pred HcCCCcEEEEEecCCCh----hHhhhhHHHHHHHHHccCCcEEEEEeCcccH------------------hHHHHCCCCC
Q 019115 70 MGKNRNVMVMFYANWCY----WSKKLAPEFAAAAKMLKGEADLVMVDAYLEK------------------DLAKEYNILA 127 (346)
Q Consensus 70 ~~~~~~~~v~F~a~wC~----~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~------------------~~~~~~~i~~ 127 (346)
.++.|+.+|+-.++.-. .|+...- =+.+.+-++.++.+..-|+.... ..++.++...
T Consensus 18 ~~e~K~L~VYLH~~~~~~t~~Fc~~~L~-se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~ 96 (136)
T cd02990 18 ARDRKLLAIYLHHDESVLSNVFCSQLLC-AESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQ 96 (136)
T ss_pred hhhcceEEEEEcCCCCccHHHHHHHHhc-CHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCC
Confidence 34579999999998653 4444420 02223333447777777776542 2456678999
Q ss_pred CcEEEEEe--CC--eeeEEeeCCCCHHHHHHHHHHHc
Q 019115 128 YPTLYLFV--AG--VRQFQFFGERTRDVISAWVREKM 160 (346)
Q Consensus 128 ~Pt~~~~~--~g--~~~~~~~g~~~~~~l~~~i~~~~ 160 (346)
+|.+.++- .+ .++.+..|..+++++.+-+...+
T Consensus 97 fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 97 LPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred CCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 99998886 22 46778899999999988887654
No 368
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=75.00 E-value=13 Score=28.09 Aligned_cols=24 Identities=4% Similarity=-0.148 Sum_probs=18.8
Q ss_pred hHHHHhhccCCeEEEEEecCCCCc
Q 019115 171 DEAERILTVESKLVLGFLHDLEGM 194 (346)
Q Consensus 171 ~~~~~~~~~~~~~~v~f~~~~~~~ 194 (346)
+.+.....++++++|.|+.+||..
T Consensus 14 eal~~Ak~~~Kpvmv~f~sdwC~~ 37 (130)
T cd02960 14 EGLYKAKKSNKPLMVIHHLEDCPH 37 (130)
T ss_pred HHHHHHHHCCCeEEEEEeCCcCHh
Confidence 344555667888999999999987
No 369
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=74.90 E-value=5.6 Score=26.14 Aligned_cols=68 Identities=12% Similarity=0.059 Sum_probs=36.1
Q ss_pred EEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCeeeEEeeCCCCHHHHHHHHH
Q 019115 79 MFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVR 157 (346)
Q Consensus 79 ~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~ 157 (346)
.++.++|++|++.+-.+....- .+....++-.......+..+-..+|++.. ++|.. -.+...|.+|+.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl----~~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~~------l~es~aI~~yL~ 70 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNI----PVEQIILQNDDEATPIRMIGAKQVPILEK-DDGSF------MAESLDIVAFID 70 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCC----CeEEEECCCCchHHHHHhcCCCccCEEEe-CCCeE------eehHHHHHHHHh
Confidence 4678899999987766554321 23333444333223333344456888732 33522 224455666653
No 370
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=74.38 E-value=13 Score=24.35 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=40.6
Q ss_pred EEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcc-cHhHHHHCCCCCCcEEEEEeCCeeeEEeeCCCCHHHHHHHH
Q 019115 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156 (346)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~-~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 156 (346)
..|+.++|+.|++..-.++...- .+....+|... .+++.+......+|++. .+|.. -.+...|.+|+
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi----~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~------l~es~aI~~yL 69 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGV----SVEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLV------LYESRIIMEYL 69 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCC----ccEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEE------EEcHHHHHHHH
Confidence 45778999999998766544322 33444455433 24555555566899763 45522 23456677776
Q ss_pred HH
Q 019115 157 RE 158 (346)
Q Consensus 157 ~~ 158 (346)
.+
T Consensus 70 ~~ 71 (73)
T cd03059 70 DE 71 (73)
T ss_pred Hh
Confidence 54
No 371
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=73.92 E-value=30 Score=27.58 Aligned_cols=87 Identities=17% Similarity=0.327 Sum_probs=54.1
Q ss_pred cCCCcEEEEEe-cCCChhHhhhhHHHHHHHHHccC-CcEEEEEeCc----------------------------ccHhHH
Q 019115 71 GKNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY----------------------------LEKDLA 120 (346)
Q Consensus 71 ~~~~~~~v~F~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~----------------------------~~~~~~ 120 (346)
..++.++..|| -++---|--+.-.|...+.++++ +..++.+.+| .+.++|
T Consensus 31 y~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~Is 110 (196)
T KOG0852|consen 31 YKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEIS 110 (196)
T ss_pred hcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccchhhH
Confidence 46788888888 35555565667778887887776 5555555543 346789
Q ss_pred HHCCCC----CCc--EEEEEe-CCeeeEEe-----eCCCCHHHHHHHHHH
Q 019115 121 KEYNIL----AYP--TLYLFV-AGVRQFQF-----FGERTRDVISAWVRE 158 (346)
Q Consensus 121 ~~~~i~----~~P--t~~~~~-~g~~~~~~-----~g~~~~~~l~~~i~~ 158 (346)
+.||+- |.+ .+++++ +| ++... .-.++.++..+.++.
T Consensus 111 rdyGvL~~~~G~~lRglfIId~~g-i~R~it~NDlpvgRSVdE~lRLvqA 159 (196)
T KOG0852|consen 111 RDYGVLKEDEGIALRGLFIIDPDG-ILRQITINDLPVGRSVDETLRLVQA 159 (196)
T ss_pred HhcCceecCCCcceeeeEEEcccc-ceEEeeecccCCCccHHHHHHHHHH
Confidence 999973 444 344554 66 33332 234677776666543
No 372
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=72.96 E-value=25 Score=30.18 Aligned_cols=78 Identities=13% Similarity=0.116 Sum_probs=48.7
Q ss_pred CCeEEEEEecCCCCccH---HHHHHHhccCCceeEEEe-------------cCHHHHhhcCCCCCCCCCeEEEEecCCCc
Q 019115 180 ESKLVLGFLHDLEGMES---EELAAASKLHSDVNFYQT-------------TSADVAEFFHIHPKSKRPALIFLHLEAGK 243 (346)
Q Consensus 180 ~~~~~v~f~~~~~~~~~---~~~~~~a~~~~~~~f~~~-------------~~~~~~~~~~v~~~~~~p~i~~~~~~~~~ 243 (346)
.+..+++||.+.|..+. ..+...+...+--.++.. .+...++++|++ ..|++++..+....
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~---~~Pal~Lv~~~t~~ 226 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVK---YFPALYLVNPKSQK 226 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCc---cCceEEEEECCCCc
Confidence 34678889998887643 334444432222222222 235688999998 48999999887544
Q ss_pred cccC-CCCCCHHHHHHHH
Q 019115 244 ATPF-RHQFTRLAIANFV 260 (346)
Q Consensus 244 ~~~y-~g~~~~~~l~~fi 260 (346)
.... .|-++.++|.+=|
T Consensus 227 ~~pv~~G~iS~deL~~Ri 244 (256)
T TIGR02739 227 MSPLAYGFISQDELKERI 244 (256)
T ss_pred EEEEeeccCCHHHHHHHH
Confidence 4333 4778888886544
No 373
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=72.89 E-value=11 Score=27.15 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=38.2
Q ss_pred CcEEEEEeeCCC---chHHHHHHHHHHHHhc------C--ceEEEEEECCCcccccchhhhcCCCCCCCcccc
Q 019115 284 RKQLWLFAPAYG---SDKVILTFEEVAKALK------G--KLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVSS 345 (346)
Q Consensus 284 ~~~~~~f~~~~~---~~~~~~~~~~~a~~~~------~--~~~f~~vd~~~~~~~~~~~~~~gi~~~~~P~~~ 345 (346)
.|.+++|.+.++ .+...+.++.+|.++- + .-....++++++. ...+..+.+++. .-|.++
T Consensus 15 ~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~-tdsLRDf~nL~d-~~P~Lv 85 (116)
T cd03071 15 GPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDM-TDSLRDYTNLPE-AAPLLT 85 (116)
T ss_pred CceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchH-HHHHHHhcCCCc-cCceEE
Confidence 388889997665 6788889999988652 1 2333334455443 666667777764 555554
No 374
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=72.79 E-value=22 Score=26.70 Aligned_cols=19 Identities=11% Similarity=-0.213 Sum_probs=14.8
Q ss_pred CCeEEEEEecCCCCccHHH
Q 019115 180 ESKLVLGFLHDLEGMESEE 198 (346)
Q Consensus 180 ~~~~~v~f~~~~~~~~~~~ 198 (346)
.++++|.|+.+||.+....
T Consensus 17 Gk~vll~F~atwC~~C~~~ 35 (132)
T cd02964 17 GKTVGLYFSASWCPPCRAF 35 (132)
T ss_pred CCEEEEEEECCCCchHHHH
Confidence 5778888999999885444
No 375
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=72.28 E-value=15 Score=27.15 Aligned_cols=85 Identities=13% Similarity=0.144 Sum_probs=48.4
Q ss_pred HHhhccCCeEEEEEecCCC----CccHHHHHH--Hhc-cCCceeEEE-e-c---CHHHHhhcCCCCCCCCCeEEEEecCC
Q 019115 174 ERILTVESKLVLGFLHDLE----GMESEELAA--ASK-LHSDVNFYQ-T-T---SADVAEFFHIHPKSKRPALIFLHLEA 241 (346)
Q Consensus 174 ~~~~~~~~~~~v~f~~~~~----~~~~~~~~~--~a~-~~~~~~f~~-~-~---~~~~~~~~~v~~~~~~p~i~~~~~~~ 241 (346)
+....+.+..+|.++.+.+ ......+.. +.+ +..++.+.. . . ...++..+++. ++|.+.++-..+
T Consensus 11 ~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~---~~P~~~~l~~~~ 87 (116)
T cd02991 11 NDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINTRMLFWACSVAKPEGYRVSQALRER---TYPFLAMIMLKD 87 (116)
T ss_pred HHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCC---CCCEEEEEEecC
Confidence 3444556777777776633 222222221 111 223343322 1 2 23588889998 599999985443
Q ss_pred Cc---cccCCCCCCHHHHHHHHh
Q 019115 242 GK---ATPFRHQFTRLAIANFVT 261 (346)
Q Consensus 242 ~~---~~~y~g~~~~~~l~~fi~ 261 (346)
++ -....|..+.+++...++
T Consensus 88 ~~~~vv~~i~G~~~~~~ll~~L~ 110 (116)
T cd02991 88 NRMTIVGRLEGLIQPEDLINRLT 110 (116)
T ss_pred CceEEEEEEeCCCCHHHHHHHHH
Confidence 33 334679999888877665
No 376
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=71.52 E-value=19 Score=26.93 Aligned_cols=53 Identities=11% Similarity=0.138 Sum_probs=33.4
Q ss_pred CcEEEEEeCcccHh----------HHHHCCCCCCcEEEEEeCCeeeEEeeCCCCHHHHHHHHHHHc
Q 019115 105 EADLVMVDAYLEKD----------LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKM 160 (346)
Q Consensus 105 ~v~~~~v~~~~~~~----------~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (346)
++.+.+-|..+++. +-++-|....|-+++ +| .+...-...+.++|.+|+.-..
T Consensus 40 gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dG-eiv~~G~YPt~eEl~~~~~i~~ 102 (123)
T PF06953_consen 40 GVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DG-EIVKTGRYPTNEELAEWLGISF 102 (123)
T ss_dssp T-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TT-EEEEESS---HHHHHHHHT--G
T ss_pred CceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CC-EEEEecCCCCHHHHHHHhCCCc
Confidence 89999999987653 345568899999877 99 4555555678999999986443
No 377
>COG1307 DegV Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.46 E-value=21 Score=31.13 Aligned_cols=158 Identities=14% Similarity=0.048 Sum_probs=85.2
Q ss_pred eCcccHhHHHHCCCCCCcEEEEEeCCeeeEEeeCCCCHHHHHHHHHHHcCCCceeccChhHHHHhh----ccCC-eEEEE
Q 019115 112 DAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERIL----TVES-KLVLG 186 (346)
Q Consensus 112 ~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~s~~~~~~~~----~~~~-~~~v~ 186 (346)
.|+-.+++.++++|..+|--+.+++. ... =....+.+++..-+...-..+-..-.+..++.+.. ++.. .++..
T Consensus 10 t~dl~~~~~~~~~I~vlPL~V~~~g~-~y~-D~~~l~~~~~~~~~~~~~~~p~TSqPs~~~~~~~~~~l~~~g~~~vi~i 87 (282)
T COG1307 10 TADLPPELAEKLDITVLPLSVIIDGE-SYF-DGVELSPDQFYYEMAEKGELPKTSQPSPGEFEELFEKLLQKGYDEVISI 87 (282)
T ss_pred CCCCCHHHHHhCCeEEEeEEEEECCE-Eee-ccccCCHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHhCCCcEEEEE
Confidence 45667899999999999988877765 222 12346666644444444333444444555554443 3332 34444
Q ss_pred EecCCCCccHHHHHHHhccCCceeEEEecCHHHHhhcCCCCCCCCCeEEEEecCCCccccCCCCCCHHHHHHHHhccCCC
Q 019115 187 FLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHP 266 (346)
Q Consensus 187 f~~~~~~~~~~~~~~~a~~~~~~~f~~~~~~~~~~~~~v~~~~~~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~p 266 (346)
.....-+..++.-..++++..+..+....+.......+.. +.+- ....-+|. +.+++.+|+++..-.
T Consensus 88 ~iSs~LSgty~~a~~a~~~~~~~~v~viDS~~~s~~~g~~---------v~~a---~~l~~~G~-s~~ei~~~l~~~~~~ 154 (282)
T COG1307 88 HISSGLSGTYQSAQLAAELVEGAKVHVIDSKSVSMGLGFL---------VLEA---AELAKAGK-SFEEILKKLEEIREK 154 (282)
T ss_pred EcCCCccHHHHHHHHHHHhccCceEEEEcCcchhhHHHHH---------HHHH---HHHHHcCC-CHHHHHHHHHHHHhh
Confidence 4555555566663334466665444443332222222211 0000 00111222 577888888888777
Q ss_pred ceEeecccchhhhccCCC
Q 019115 267 LVVTLTIHNAQFVFQDPR 284 (346)
Q Consensus 267 ~~~~lt~~~~~~~~~~~~ 284 (346)
.-..+.-+++..+..+++
T Consensus 155 t~~~~~v~~L~~L~kgGR 172 (282)
T COG1307 155 TKAYFVVDDLDNLVKGGR 172 (282)
T ss_pred cEEEEEECchhHHHhCCC
Confidence 777777777776666665
No 378
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=70.37 E-value=7.5 Score=29.58 Aligned_cols=34 Identities=15% Similarity=0.080 Sum_probs=24.0
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCccc
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~ 116 (346)
+..|+.++|+.|++....+++- ++.|-.+|..++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH------QLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc------CCCeEEEECCCC
Confidence 3467789999999977555542 566777777654
No 379
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=70.08 E-value=26 Score=22.54 Aligned_cols=66 Identities=9% Similarity=0.070 Sum_probs=39.6
Q ss_pred EEEEecCCCCccHHHHHHHhccCCceeEEEe---cCHH----HHhhcCCCCCCCCCeEEEEecCCCccccCCCCCCHHHH
Q 019115 184 VLGFLHDLEGMESEELAAASKLHSDVNFYQT---TSAD----VAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAI 256 (346)
Q Consensus 184 ~v~f~~~~~~~~~~~~~~~a~~~~~~~f~~~---~~~~----~~~~~~v~~~~~~p~i~~~~~~~~~~~~y~g~~~~~~l 256 (346)
+..|+.++|.........+... ++.+... .+.. +.+.+++. +.|++++. + . ...| .+.+.|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~--~i~~~~vdi~~~~~~~~~~~~~~~~~---~vP~~~~~--~--~--~~~g-~~~~~i 69 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK--GIAFEEIDVEKDSAAREEVLKVLGQR---GVPVIVIG--H--K--IIVG-FDPEKL 69 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC--CCeEEEEeccCCHHHHHHHHHHhCCC---cccEEEEC--C--E--EEee-CCHHHH
Confidence 3568889998866655444432 2333322 2322 45567776 58998874 2 2 2555 477889
Q ss_pred HHHHh
Q 019115 257 ANFVT 261 (346)
Q Consensus 257 ~~fi~ 261 (346)
.+||+
T Consensus 70 ~~~i~ 74 (74)
T TIGR02196 70 DQLLE 74 (74)
T ss_pred HHHhC
Confidence 88874
No 380
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=70.05 E-value=29 Score=28.18 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=28.3
Q ss_pred cCHHHHhhcCCCCCCCCCeEEEEecCCCccccCCCCC-CHHHHHHHHhc
Q 019115 215 TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQF-TRLAIANFVTH 262 (346)
Q Consensus 215 ~~~~~~~~~~v~~~~~~p~i~~~~~~~~~~~~y~g~~-~~~~l~~fi~~ 262 (346)
.+.++.+.|++. ..|+.+++.+++ .+.+.|.. +.+.+.++++.
T Consensus 134 ~~~~i~~~y~v~---~~P~~~lID~~G--~I~~~g~~~~~~~le~ll~~ 177 (189)
T TIGR02661 134 VSAEIGMAFQVG---KIPYGVLLDQDG--KIRAKGLTNTREHLESLLEA 177 (189)
T ss_pred chhHHHHhccCC---ccceEEEECCCC--eEEEccCCCCHHHHHHHHHH
Confidence 356788888887 489888776553 33444542 44677777764
No 381
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=69.27 E-value=9 Score=26.09 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=23.2
Q ss_pred CCcEEEEEe-CCeeeEEee-CCCCHHHHHHHHHHHc
Q 019115 127 AYPTLYLFV-AGVRQFQFF-GERTRDVISAWVREKM 160 (346)
Q Consensus 127 ~~Pt~~~~~-~g~~~~~~~-g~~~~~~l~~~i~~~~ 160 (346)
.-|++++++ +|+...+.. ..++.+.+.+|+.+..
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 358999998 887777766 6689999999998763
No 382
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=68.31 E-value=17 Score=23.87 Aligned_cols=51 Identities=18% Similarity=0.094 Sum_probs=32.7
Q ss_pred EEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcc----cHhHHHHCCCCCCcEEE
Q 019115 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL----EKDLAKEYNILAYPTLY 132 (346)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~----~~~~~~~~~i~~~Pt~~ 132 (346)
..|+.++|++|++.+-.+....- .+....++..+ .+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi----~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL----ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC----CCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 35788999999987655554322 44555555432 25666665667899985
No 383
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=67.91 E-value=24 Score=24.49 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=29.8
Q ss_pred CcEEEEEe-eCCC-chHHHHHHHHHHHHhc--CceEEEEEECCCc
Q 019115 284 RKQLWLFA-PAYG-SDKVILTFEEVAKALK--GKLLHVYVEMNSE 324 (346)
Q Consensus 284 ~~~~~~f~-~~~~-~~~~~~~~~~~a~~~~--~~~~f~~vd~~~~ 324 (346)
+++++.|. .++. +....+.+.++.++|+ +++.++.|..++.
T Consensus 2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~ 46 (95)
T PF13905_consen 2 KPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDED 46 (95)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSS
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCC
Confidence 44455444 4555 8899999999999999 7788888877653
No 384
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=66.97 E-value=7.9 Score=31.58 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=28.3
Q ss_pred cHhHHHHCCCCCCcEEEEEeCCeeeEEeeCCCCHHHHHHHH
Q 019115 116 EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156 (346)
Q Consensus 116 ~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 156 (346)
+...+.+.||.++||+++ +|+ ....|..+.+.+.+-|
T Consensus 164 ~~~~a~~~gv~G~Pt~vv--~g~--~~~~G~~~~~~~~~~i 200 (201)
T cd03024 164 DEARARQLGISGVPFFVF--NGK--YAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHHCCCCcCCEEEE--CCe--EeecCCCCHHHHHHHh
Confidence 345678899999999988 663 3467999998887654
No 385
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=66.95 E-value=50 Score=29.01 Aligned_cols=81 Identities=15% Similarity=0.229 Sum_probs=55.8
Q ss_pred HHHHHHHhccCCCceEeecccchhhhccCCC---cEEEEEeeCC-----C-chHHHHHHHHHHHHhc------C--ceEE
Q 019115 254 LAIANFVTHTKHPLVVTLTIHNAQFVFQDPR---KQLWLFAPAY-----G-SDKVILTFEEVAKALK------G--KLLH 316 (346)
Q Consensus 254 ~~l~~fi~~~~~p~~~~lt~~~~~~~~~~~~---~~~~~f~~~~-----~-~~~~~~~~~~~a~~~~------~--~~~f 316 (346)
+++.+-..-.+...+..++.+++..+...+- -.+++|+..+ . +.+..++++-+|..++ + |+-|
T Consensus 28 ~kv~~L~~~ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF 107 (331)
T KOG2603|consen 28 NKVVQLMSWTSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFF 107 (331)
T ss_pred HHHHHHHhccCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEE
Confidence 4455555434455577788888887776544 3344555422 2 6677799999998876 3 6899
Q ss_pred EEEECCCcccccchhhhcCCC
Q 019115 317 VYVEMNSEGVGRRVSQEFGVS 337 (346)
Q Consensus 317 ~~vd~~~~~~~~~~~~~~gi~ 337 (346)
..||.++ .++..+.+++.
T Consensus 108 ~~Vd~~e---~p~~Fq~l~ln 125 (331)
T KOG2603|consen 108 CMVDYDE---SPQVFQQLNLN 125 (331)
T ss_pred EEEeccc---cHHHHHHhccc
Confidence 9999998 45889999885
No 386
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=65.95 E-value=52 Score=24.39 Aligned_cols=88 Identities=15% Similarity=0.059 Sum_probs=55.3
Q ss_pred cCCCcEEEEEe-cCCChhHhhhhHHHHHHHHHccC-CcEEEEEeC-ccc-----------HhHHHHCCCCC-CcEEEEEe
Q 019115 71 GKNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDA-YLE-----------KDLAKEYNILA-YPTLYLFV 135 (346)
Q Consensus 71 ~~~~~~~v~F~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~-~~~-----------~~~~~~~~i~~-~Pt~~~~~ 135 (346)
.++++++| |- ++.-+.-+.....+.+....+.. ++.++.+-- ... ..+.++|++.. .-+++++.
T Consensus 8 w~~R~lvv-~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiG 86 (118)
T PF13778_consen 8 WKNRLLVV-FAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIG 86 (118)
T ss_pred CcCceEEE-ECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEe
Confidence 34444333 33 23455566666777775555555 666666522 222 26788888653 23455554
Q ss_pred -CCeeeEEeeCCCCHHHHHHHHHHH
Q 019115 136 -AGVRQFQFFGERTRDVISAWVREK 159 (346)
Q Consensus 136 -~g~~~~~~~g~~~~~~l~~~i~~~ 159 (346)
+|.+..++....+.++|.+.|..+
T Consensus 87 KDG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 87 KDGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred CCCcEEEecCCCCCHHHHHHHHhCC
Confidence 887888999999999999888653
No 387
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=64.53 E-value=9.9 Score=30.73 Aligned_cols=28 Identities=18% Similarity=0.430 Sum_probs=24.9
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccC
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKG 104 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~ 104 (346)
+..|+.+.||.|-...+.+.++.+++++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~ 30 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGG 30 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCC
Confidence 5678899999999999999999999843
No 388
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=64.41 E-value=48 Score=23.49 Aligned_cols=79 Identities=11% Similarity=0.123 Sum_probs=46.4
Q ss_pred HHHHhhc--cCCeEEEEEecC--CCCccHHHHHHHhccCCceeEEEecCHHHHhhcCCCCCCCCCeEEEEecCCCccccC
Q 019115 172 EAERILT--VESKLVLGFLHD--LEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPF 247 (346)
Q Consensus 172 ~~~~~~~--~~~~~~v~f~~~--~~~~~~~~~~~~a~~~~~~~f~~~~~~~~~~~~~v~~~~~~p~i~~~~~~~~~~~~y 247 (346)
+++..+. .+++.++.|.++ .|....+.+.++|.+.+++.+-.....+ . .|++.+...+....+.|
T Consensus 9 qL~~~f~~l~~pV~l~~f~~~~~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-------~----~P~~~i~~~~~~~gIrF 77 (94)
T cd02974 9 QLKAYLERLENPVELVASLDDSEKSAELLELLEEIASLSDKITLEEDNDDE-------R----KPSFSINRPGEDTGIRF 77 (94)
T ss_pred HHHHHHHhCCCCEEEEEEeCCCcchHHHHHHHHHHHHhCCceEEEEecCCC-------C----CCEEEEecCCCcccEEE
Confidence 3444443 355666666653 3333555556778888888774322111 2 49999887664456888
Q ss_pred CCCCCHHHHHHHHh
Q 019115 248 RHQFTRLAIANFVT 261 (346)
Q Consensus 248 ~g~~~~~~l~~fi~ 261 (346)
.|--.=.++..||.
T Consensus 78 ~GiP~GhEf~Slil 91 (94)
T cd02974 78 AGIPMGHEFTSLVL 91 (94)
T ss_pred EecCCchhHHHHHH
Confidence 87655566666663
No 389
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=64.40 E-value=11 Score=33.26 Aligned_cols=77 Identities=10% Similarity=0.062 Sum_probs=52.9
Q ss_pred CChhHhhhhHHHHHHHHH----ccC---CcEEEEEeCcccH---hHHHHCCCCC--CcEEEEEeCCeeeEEeeCCCCHHH
Q 019115 84 WCYWSKKLAPEFAAAAKM----LKG---EADLVMVDAYLEK---DLAKEYNILA--YPTLYLFVAGVRQFQFFGERTRDV 151 (346)
Q Consensus 84 wC~~C~~~~p~~~~~~~~----~~~---~v~~~~v~~~~~~---~~~~~~~i~~--~Pt~~~~~~g~~~~~~~g~~~~~~ 151 (346)
-||.|-+..-.+.+.+++ +.. .+.++.+-|--|. .--..+||.+ -|...+|.+|+.+.+..+..-.++
T Consensus 263 aCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~ee 342 (361)
T COG0821 263 ACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEE 342 (361)
T ss_pred ECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHH
Confidence 489998776555444433 322 5777777775432 2223466654 689999999998899888888888
Q ss_pred HHHHHHHHc
Q 019115 152 ISAWVREKM 160 (346)
Q Consensus 152 l~~~i~~~~ 160 (346)
+...+.++.
T Consensus 343 l~~~i~~~~ 351 (361)
T COG0821 343 LEALIEAYA 351 (361)
T ss_pred HHHHHHHHH
Confidence 888877665
No 390
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=62.73 E-value=11 Score=33.63 Aligned_cols=75 Identities=12% Similarity=0.082 Sum_probs=45.9
Q ss_pred ChhHhhhhHHHHHHHH----HccC---CcEEEEEeCc-ccH--hHHHHCCCCCC-cEEEEEeCCeeeEEeeCCCCHHHHH
Q 019115 85 CYWSKKLAPEFAAAAK----MLKG---EADLVMVDAY-LEK--DLAKEYNILAY-PTLYLFVAGVRQFQFFGERTRDVIS 153 (346)
Q Consensus 85 C~~C~~~~p~~~~~~~----~~~~---~v~~~~v~~~-~~~--~~~~~~~i~~~-Pt~~~~~~g~~~~~~~g~~~~~~l~ 153 (346)
||.|....-....++. .+.+ .+.++..-|. ..+ .-...+||.+- +...+|.+|+.+.+..+..-.+.+.
T Consensus 271 CPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l~ 350 (360)
T PRK00366 271 CPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEELE 350 (360)
T ss_pred CCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHHH
Confidence 6666665544444443 3443 5788888884 222 23356777754 4577888998888877765555666
Q ss_pred HHHHHH
Q 019115 154 AWVREK 159 (346)
Q Consensus 154 ~~i~~~ 159 (346)
+.|.+.
T Consensus 351 ~~i~~~ 356 (360)
T PRK00366 351 AEIEAY 356 (360)
T ss_pred HHHHHH
Confidence 555543
No 391
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=62.10 E-value=65 Score=26.12 Aligned_cols=47 Identities=9% Similarity=0.082 Sum_probs=32.6
Q ss_pred EEEecCHHHHhhcCCCCCCCCCeE-EEEecCCCccccCCCCCCHHHHHHHH
Q 019115 211 FYQTTSADVAEFFHIHPKSKRPAL-IFLHLEAGKATPFRHQFTRLAIANFV 260 (346)
Q Consensus 211 f~~~~~~~~~~~~~v~~~~~~p~i-~~~~~~~~~~~~y~g~~~~~~l~~fi 260 (346)
+....+..+...+++. +.|+- +++.+.+.....+.|..+.+++.+.+
T Consensus 129 vllD~~g~v~~~~gv~---~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 129 VVLDDKGAVKNAWQLN---SEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred EEECCcchHHHhcCCC---CCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 3444555677888887 47766 67766655667778998888877754
No 392
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=61.83 E-value=13 Score=27.11 Aligned_cols=63 Identities=16% Similarity=0.225 Sum_probs=39.6
Q ss_pred EecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCC--CCcEEEE-EeCCeeeEEeeCC
Q 019115 80 FYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNIL--AYPTLYL-FVAGVRQFQFFGE 146 (346)
Q Consensus 80 F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~--~~Pt~~~-~~~g~~~~~~~g~ 146 (346)
||..+|+-|......+.+... .+.+.++.+.-....++.+.+++. ...+.++ .++|+ ..|.|.
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~--~~~~G~ 67 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR--GGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE--RVYRGS 67 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC--CCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC--EEEEcH
Confidence 788999999999888877622 236777655434444556777765 2444444 35774 345554
No 393
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=61.67 E-value=47 Score=28.38 Aligned_cols=78 Identities=14% Similarity=0.121 Sum_probs=48.5
Q ss_pred CCeEEEEEecCCCCc---cHHHHHHHhccCCceeEEEe-------------cCHHHHhhcCCCCCCCCCeEEEEecCCCc
Q 019115 180 ESKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQT-------------TSADVAEFFHIHPKSKRPALIFLHLEAGK 243 (346)
Q Consensus 180 ~~~~~v~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~-------------~~~~~~~~~~v~~~~~~p~i~~~~~~~~~ 243 (346)
.+..+++||.+.|.. ..+.+...+...+--.+... .+...++.+++. ..|++++..+....
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~---~~PAl~Lv~~~t~~ 219 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVK---YFPALMLVDPKSGS 219 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCc---ccceEEEEECCCCc
Confidence 336777889988876 44445555532222222222 234567889998 48999999887544
Q ss_pred cccC-CCCCCHHHHHHHH
Q 019115 244 ATPF-RHQFTRLAIANFV 260 (346)
Q Consensus 244 ~~~y-~g~~~~~~l~~fi 260 (346)
.... .|-++.++|.+=|
T Consensus 220 ~~pv~~G~iS~deL~~Ri 237 (248)
T PRK13703 220 VRPLSYGFITQDDLAKRF 237 (248)
T ss_pred EEEEeeccCCHHHHHHHH
Confidence 4333 4778888886544
No 394
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=61.47 E-value=13 Score=29.89 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=26.4
Q ss_pred HhHHHHCCCCCCcEEEEEeCCeeeEEeeCCCCHHHHHHHH
Q 019115 117 KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156 (346)
Q Consensus 117 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 156 (346)
.+.+.+.||.++||+++ +|+ .+.|....+.+.+.+
T Consensus 157 ~~~a~~~gi~gvPtfvv--~g~---~~~G~~~l~~~~~~l 191 (192)
T cd03022 157 TEEAIARGVFGVPTFVV--DGE---MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHHcCCCcCCeEEE--CCe---eecccccHHHHHHHh
Confidence 45677899999999988 774 556887777766554
No 395
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=61.38 E-value=31 Score=23.36 Aligned_cols=23 Identities=9% Similarity=-0.034 Sum_probs=18.9
Q ss_pred HHHHhhccCCeEEEEEecCCCCc
Q 019115 172 EAERILTVESKLVLGFLHDLEGM 194 (346)
Q Consensus 172 ~~~~~~~~~~~~~v~f~~~~~~~ 194 (346)
.+.....++++++|.|+.+||..
T Consensus 9 al~~A~~~~kpvlv~f~a~wC~~ 31 (82)
T PF13899_consen 9 ALAEAKKEGKPVLVDFGADWCPP 31 (82)
T ss_dssp HHHHHHHHTSEEEEEEETTTTHH
T ss_pred HHHHHHHcCCCEEEEEECCCCHh
Confidence 45566677899999999999987
No 396
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=60.62 E-value=9.1 Score=22.78 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=10.9
Q ss_pred CcchhHHHHHHHHHHHHH
Q 019115 1 MEKTKTLLLLLTSSIILF 18 (346)
Q Consensus 1 M~~~~~~~~l~~~~~~~~ 18 (346)
|+|.++++++.+.++.++
T Consensus 1 ~kk~rwiili~iv~~Cl~ 18 (47)
T PRK10299 1 MKKFRWVVLVVVVLACLL 18 (47)
T ss_pred CceeeehHHHHHHHHHHH
Confidence 888887666554444433
No 397
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=60.34 E-value=33 Score=26.63 Aligned_cols=20 Identities=15% Similarity=-0.144 Sum_probs=13.7
Q ss_pred CCeEEEEEecCCCCccHHHH
Q 019115 180 ESKLVLGFLHDLEGMESEEL 199 (346)
Q Consensus 180 ~~~~~v~f~~~~~~~~~~~~ 199 (346)
.++++|.|.++||.+..+..
T Consensus 25 gk~vlL~FwAsWCppCr~e~ 44 (146)
T cd03008 25 NRVLLLFFGAVVSPQCQLFA 44 (146)
T ss_pred CCEEEEEEECCCChhHHHHH
Confidence 56777778888887744443
No 398
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=60.27 E-value=9.7 Score=34.01 Aligned_cols=82 Identities=10% Similarity=0.094 Sum_probs=49.2
Q ss_pred CCcEEEEEecCCChhHhhhhHHHHHHHHHccC-------CcEEEEEeCcccH--h-HHHHCCCC-CCc-EEEEEeCCeee
Q 019115 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-------EADLVMVDAYLEK--D-LAKEYNIL-AYP-TLYLFVAGVRQ 140 (346)
Q Consensus 73 ~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~-------~v~~~~v~~~~~~--~-~~~~~~i~-~~P-t~~~~~~g~~~ 140 (346)
.++-+| .||.|-+..=.+.+++++.+. .++++.+-|--|. + --..+|+. +-| ...+|.+|+.+
T Consensus 264 ~g~~~I-----SCPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v 338 (359)
T PF04551_consen 264 RGPEII-----SCPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVV 338 (359)
T ss_dssp SS-EEE-----E----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEE
T ss_pred CCceee-----eCCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEE
Confidence 455455 388887776566666555432 6889999997552 1 12346666 333 48889999999
Q ss_pred EEe-eCCCCHHHHHHHHHHH
Q 019115 141 FQF-FGERTRDVISAWVREK 159 (346)
Q Consensus 141 ~~~-~g~~~~~~l~~~i~~~ 159 (346)
.+. ....-.+.+.+.|+++
T Consensus 339 ~k~~~ee~~vd~L~~~I~~~ 358 (359)
T PF04551_consen 339 KKVIPEEEIVDELIELIEEH 358 (359)
T ss_dssp EEE-CSTCHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHHHHHHHhh
Confidence 888 7777788888888764
No 399
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=58.96 E-value=29 Score=24.05 Aligned_cols=53 Identities=9% Similarity=0.187 Sum_probs=32.8
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCccc-HhHHHHCCCCCCcEEEE
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-KDLAKEYNILAYPTLYL 133 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~-~~~~~~~~i~~~Pt~~~ 133 (346)
+..|+.+.|++|++..-.+....- .+....++.... .++.+......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl----~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNI----PHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCC----CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 455678889999987655544311 455555655433 34555556678999864
No 400
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=57.96 E-value=58 Score=23.33 Aligned_cols=70 Identities=20% Similarity=0.314 Sum_probs=40.6
Q ss_pred hcHHHHHcCCCcEEEEEec---CCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCC-CCCcEE-EEEeCCe
Q 019115 64 KNFSEFMGKNRNVMVMFYA---NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNI-LAYPTL-YLFVAGV 138 (346)
Q Consensus 64 ~~~~~~~~~~~~~~v~F~a---~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i-~~~Pt~-~~~~~g~ 138 (346)
+.+++.+++++.++-+=.+ |-|+...+....+... + -+.|+.||+-+++++.+...- ..+||+ -+|-+|+
T Consensus 6 ~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~----g-~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GE 80 (105)
T COG0278 6 DRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSAC----G-VVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGE 80 (105)
T ss_pred HHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHc----C-CcceeEEeeccCHHHHhccHhhcCCCCCceeeECCE
Confidence 3455566565544433333 5677766655544433 2 178999999999988876543 334543 1233774
No 401
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=56.45 E-value=44 Score=25.23 Aligned_cols=62 Identities=13% Similarity=0.192 Sum_probs=34.1
Q ss_pred cCCeEEEEEecCCCCc---cHHHHHHHhccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEecC
Q 019115 179 VESKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLE 240 (346)
Q Consensus 179 ~~~~~~v~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~---~~~~~~~~~~v~~~~~~p~i~~~~~~ 240 (346)
..+..++.+..+||+- ..+.+.++++..+++.+... .+.++.+.|-.....+.|+++++..+
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD 107 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC
Confidence 3566777889999987 44455666666566666544 34556665544333478999999654
No 402
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=55.09 E-value=15 Score=25.42 Aligned_cols=7 Identities=43% Similarity=0.676 Sum_probs=4.4
Q ss_pred CcchhHH
Q 019115 1 MEKTKTL 7 (346)
Q Consensus 1 M~~~~~~ 7 (346)
|+|++++
T Consensus 1 MKK~kii 7 (85)
T PF11337_consen 1 MKKKKII 7 (85)
T ss_pred CCchHHH
Confidence 8875543
No 403
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=54.97 E-value=76 Score=26.21 Aligned_cols=69 Identities=16% Similarity=0.076 Sum_probs=44.4
Q ss_pred CChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCC-CCCCcEEEEEeCCeeeEEeeCCCCHHHHHHHHHHHcCC
Q 019115 84 WCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYN-ILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTL 162 (346)
Q Consensus 84 wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~-i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~ 162 (346)
.|+.|+++.-.+. .+-. .+.+-.||....++--+..- -...|-+ .|+ | .+..+.+.|.++|++.+++
T Consensus 20 dcpf~qr~~m~L~---~k~~-~f~vttVd~~~kp~~f~~~sp~~~~P~l-~~d-~------~~~tDs~~Ie~~Lee~l~~ 87 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGV-PFKVTTVDLSRKPEWFLDISPGGKPPVL-KFD-E------KWVTDSDKIEEFLEEKLPP 87 (221)
T ss_pred CChhHHHHHHHHH---HcCC-CceEEEeecCCCcHHHHhhCCCCCCCeE-EeC-C------ceeccHHHHHHHHHHhcCC
Confidence 4888888765555 2211 67788899887766554443 3445544 333 3 2346789999999999865
Q ss_pred Cc
Q 019115 163 GT 164 (346)
Q Consensus 163 ~~ 164 (346)
+-
T Consensus 88 p~ 89 (221)
T KOG1422|consen 88 PK 89 (221)
T ss_pred CC
Confidence 43
No 404
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=53.65 E-value=31 Score=28.24 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=32.6
Q ss_pred cHhHHHHCCCCCCcEEEEEeCCeeeEEeeCCCCHHHHHHHHHH
Q 019115 116 EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158 (346)
Q Consensus 116 ~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 158 (346)
+|.+-++|+|+.+|++++...+ ......|..+...-.+.+.+
T Consensus 151 DP~lF~~F~I~~VPafVv~C~~-~yD~I~GNIsl~~ALe~iA~ 192 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCSQ-GYDIIRGNLRVGQALEKVAA 192 (212)
T ss_pred CHHHHHhcCCccccEEEEEcCC-CCCEEEecccHHHHHHHHHh
Confidence 6889999999999999997643 45567788887766666654
No 405
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=52.85 E-value=17 Score=29.34 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=18.3
Q ss_pred HhHHHHCCCCCCcEEEEEeCCe
Q 019115 117 KDLAKEYNILAYPTLYLFVAGV 138 (346)
Q Consensus 117 ~~~~~~~~i~~~Pt~~~~~~g~ 138 (346)
...+.++||.++||+++.+++.
T Consensus 159 ~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 159 QKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHcCCCccCEEEEEeCCe
Confidence 4567789999999999998664
No 406
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=51.39 E-value=91 Score=23.02 Aligned_cols=15 Identities=13% Similarity=-0.057 Sum_probs=8.9
Q ss_pred CCeEEEEEecCCCCc
Q 019115 180 ESKLVLGFLHDLEGM 194 (346)
Q Consensus 180 ~~~~~v~f~~~~~~~ 194 (346)
.++++|.|+..||..
T Consensus 23 gk~vvl~F~a~~C~~ 37 (126)
T cd03012 23 GKVVLLDFWTYCCIN 37 (126)
T ss_pred CCEEEEEEECCCCcc
Confidence 345666666666655
No 407
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=49.02 E-value=77 Score=23.05 Aligned_cols=54 Identities=13% Similarity=0.227 Sum_probs=36.4
Q ss_pred CCCcEEEEEeeC--CC-chHHHHHHHHHHHHhcC-ceEEEEEECCCcccccchhhhcC
Q 019115 282 DPRKQLWLFAPA--YG-SDKVILTFEEVAKALKG-KLLHVYVEMNSEGVGRRVSQEFG 335 (346)
Q Consensus 282 ~~~~~~~~f~~~--~~-~~~~~~~~~~~a~~~~~-~~~f~~vd~~~~~~~~~~~~~~g 335 (346)
.++++++.|... +. +......+.++..+++. ++.++.+..+...-...+.+..+
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~ 81 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYG 81 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHT
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhc
Confidence 456777777766 33 77888888898888886 58888887765432233444444
No 408
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=48.62 E-value=61 Score=21.95 Aligned_cols=74 Identities=7% Similarity=0.100 Sum_probs=41.8
Q ss_pred EEEEecCCCCccHHHHHHHhcc--CCceeEEE---ecCHHHHhhcCCCCCCCCCeEEEEecCC-CccccCCCCCCHHHHH
Q 019115 184 VLGFLHDLEGMESEELAAASKL--HSDVNFYQ---TTSADVAEFFHIHPKSKRPALIFLHLEA-GKATPFRHQFTRLAIA 257 (346)
Q Consensus 184 ~v~f~~~~~~~~~~~~~~~a~~--~~~~~f~~---~~~~~~~~~~~v~~~~~~p~i~~~~~~~-~~~~~y~g~~~~~~l~ 257 (346)
++.|..+.|.-....-..+... ...+.+.. ..++.+.++|+.. .|.+.+=...+ .......+.++.+.|.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~~~----IPVl~~~~~~~~~~~~~~~~~~d~~~L~ 77 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYGYR----IPVLHIDGIRQFKEQEELKWRFDEEQLR 77 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSCTS----TSEEEETT-GGGCTSEEEESSB-HHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhcCC----CCEEEEcCcccccccceeCCCCCHHHHH
Confidence 4567778777644444444422 22333322 3677899999986 68755322111 1134445678999999
Q ss_pred HHHh
Q 019115 258 NFVT 261 (346)
Q Consensus 258 ~fi~ 261 (346)
+||+
T Consensus 78 ~~L~ 81 (81)
T PF05768_consen 78 AWLE 81 (81)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9985
No 409
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=47.96 E-value=1.7e+02 Score=24.77 Aligned_cols=31 Identities=3% Similarity=0.026 Sum_probs=20.6
Q ss_pred CeEEEEecCCCccccCCCCCCHHHHHHHHhc
Q 019115 232 PALIFLHLEAGKATPFRHQFTRLAIANFVTH 262 (346)
Q Consensus 232 p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~ 262 (346)
|+.+++.+++.....|.|..+.++|...|++
T Consensus 202 PttfLIDk~GkVv~~~~G~~~~~~le~~I~~ 232 (236)
T PLN02399 202 FEKFLVDKNGKVVERYPPTTSPFQIEKDIQK 232 (236)
T ss_pred ceEEEECCCCcEEEEECCCCCHHHHHHHHHH
Confidence 5666666555556667777777777777754
No 410
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=47.50 E-value=2.8e+02 Score=27.00 Aligned_cols=77 Identities=13% Similarity=0.069 Sum_probs=47.4
Q ss_pred CcCCCcEEcChhcHHHHHcCCCcEEEEEecCCC-h-hHhhhhHHHHHHHHHccC---CcEEEEEeCcccHhH--------
Q 019115 53 LYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWC-Y-WSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDL-------- 119 (346)
Q Consensus 53 ~~~~~v~~l~~~~~~~~~~~~~~~~v~F~a~wC-~-~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~~~~-------- 119 (346)
.....+.+|++.+-+-+-.=++++-|.+|.+-- + .-......++++-++|+. ++.+-.+|-..+++.
T Consensus 27 lT~~k~ytLS~~T~~~L~~L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~s~~i~~~~iDP~~~~~~e~~~~~~~ 106 (552)
T TIGR03521 27 LTEDKRYTLSPASKEVVKKLDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAYNPNIKFRFVNPLEEEDEQGEEILDS 106 (552)
T ss_pred cCCCCceecCHHHHHHHHhCCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHHHHH
Confidence 345678888888877555556788887776532 1 123333444444444433 788888998765433
Q ss_pred HHHCCCCCCc
Q 019115 120 AKEYNILAYP 129 (346)
Q Consensus 120 ~~~~~i~~~P 129 (346)
+.++||...+
T Consensus 107 ~~~~gi~~~~ 116 (552)
T TIGR03521 107 LAQYGIKPAN 116 (552)
T ss_pred HHHcCCCcce
Confidence 3457887665
No 411
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=46.63 E-value=25 Score=25.84 Aligned_cols=33 Identities=12% Similarity=0.187 Sum_probs=22.6
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcc
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL 115 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~ 115 (346)
+..|..|.|+.|++....+++- ++.+-.+|..+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~------gi~~~~~d~~~ 34 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA------GHEVEVRDLLT 34 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEeehhc
Confidence 3467889999999877655542 46666666544
No 412
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=43.37 E-value=94 Score=20.44 Aligned_cols=55 Identities=16% Similarity=0.031 Sum_probs=33.8
Q ss_pred EEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcc----cHhHHHHCCCCCCcEEEEEeCCe
Q 019115 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL----EKDLAKEYNILAYPTLYLFVAGV 138 (346)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~----~~~~~~~~~i~~~Pt~~~~~~g~ 138 (346)
..|+.+.|+.|++.+-.+.+. +-.+.+..+|... .+++.+--.-..+|++. .+|.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~----gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~ 60 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEK----GLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDN 60 (73)
T ss_pred EEecCCCCccHHHHHHHHHHc----CCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCE
Confidence 457788899998876333332 2255666676532 34465555567799985 4663
No 413
>PTZ00056 glutathione peroxidase; Provisional
Probab=43.16 E-value=1.5e+02 Score=24.25 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=10.5
Q ss_pred CCeEEEEEecCCCCccHH
Q 019115 180 ESKLVLGFLHDLEGMESE 197 (346)
Q Consensus 180 ~~~~~v~f~~~~~~~~~~ 197 (346)
.++++|.|..+||.+...
T Consensus 39 Gkvvlv~fwAswC~~C~~ 56 (199)
T PTZ00056 39 NKVLMITNSASKCGLTKK 56 (199)
T ss_pred CCEEEEEEECCCCCChHH
Confidence 345666666666666443
No 414
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=42.64 E-value=1.3e+02 Score=24.34 Aligned_cols=24 Identities=8% Similarity=-0.117 Sum_probs=15.0
Q ss_pred CCeEEEEEecCCCCccHHHHHHHh
Q 019115 180 ESKLVLGFLHDLEGMESEELAAAS 203 (346)
Q Consensus 180 ~~~~~v~f~~~~~~~~~~~~~~~a 203 (346)
.+..++.|+++.|....+....+.
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~ 100 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELK 100 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHh
Confidence 456666777777776555555443
No 415
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=42.10 E-value=90 Score=20.02 Aligned_cols=55 Identities=16% Similarity=0.006 Sum_probs=32.4
Q ss_pred EEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcc----cHhHHHHCCCCCCcEEEEEeCCe
Q 019115 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL----EKDLAKEYNILAYPTLYLFVAGV 138 (346)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~----~~~~~~~~~i~~~Pt~~~~~~g~ 138 (346)
..|+.++|+.|++.+-.+....- .+....++... ..++.+...-..+|++.. +|.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~----~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~ 60 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGI----PYEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGR 60 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC----CcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCE
Confidence 35778899999987655544321 44455555422 234444444567899854 453
No 416
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=40.90 E-value=1e+02 Score=21.65 Aligned_cols=51 Identities=10% Similarity=0.098 Sum_probs=28.1
Q ss_pred ChhHhhhhHHHHHHHHHccC-CcEEEEEeCcccHhHHHHC--------CCCCCcEEEEEeCC
Q 019115 85 CYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEY--------NILAYPTLYLFVAG 137 (346)
Q Consensus 85 C~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~--------~i~~~Pt~~~~~~g 137 (346)
+.--++....=+++..-++. +|.|-.+|++.+++..+.+ +-..+|.+++ +|
T Consensus 9 ~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi--~~ 68 (92)
T cd03030 9 SSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFN--GD 68 (92)
T ss_pred ccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEE--CC
Confidence 33334443333333333333 7999999998776544332 3466787754 55
No 417
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=40.30 E-value=1.5e+02 Score=24.82 Aligned_cols=81 Identities=12% Similarity=0.199 Sum_probs=52.2
Q ss_pred ceeccChhHHHHhhccCCeEEEEEecCCCCc---cHHHHHHHhccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEE
Q 019115 164 TYSITTTDEAERILTVESKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFL 237 (346)
Q Consensus 164 ~~~i~s~~~~~~~~~~~~~~~v~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~---~~~~~~~~~~v~~~~~~p~i~~~ 237 (346)
+..+.+.+++ +.......++.|...|... ..+.+..+++...++.|..+ ..++++..+.+.. .|..+.+
T Consensus 3 v~~i~~~~~f--~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~---vp~~~~~ 77 (227)
T KOG0911|consen 3 VQFIVFQEQF--LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEA---VPYFVFF 77 (227)
T ss_pred ceeehhHHHH--HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhc---Cceeeee
Confidence 4455566666 4445666777777877765 55666667765577777765 4567888888874 7888887
Q ss_pred ecCCCccccCCCC
Q 019115 238 HLEAGKATPFRHQ 250 (346)
Q Consensus 238 ~~~~~~~~~y~g~ 250 (346)
..+. ......|.
T Consensus 78 ~~~~-~v~~l~~~ 89 (227)
T KOG0911|consen 78 FLGE-KVDRLSGA 89 (227)
T ss_pred ecch-hhhhhhcc
Confidence 6543 33334443
No 418
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=39.93 E-value=20 Score=31.82 Aligned_cols=69 Identities=12% Similarity=0.078 Sum_probs=39.4
Q ss_pred CCcEEEEEecCCChhHhhhhHHHHHHHHH----c---cCCcEEEEEeCcccH---hHHHHCCCCCC--cEEEEEeCCeee
Q 019115 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKM----L---KGEADLVMVDAYLEK---DLAKEYNILAY--PTLYLFVAGVRQ 140 (346)
Q Consensus 73 ~~~~~v~F~a~wC~~C~~~~p~~~~~~~~----~---~~~v~~~~v~~~~~~---~~~~~~~i~~~--Pt~~~~~~g~~~ 140 (346)
..+-+| .||.|-+..-.+.+++++ + +..+.++.+-|.-|. .--..+||.+- -...+|++|+.+
T Consensus 255 ~g~~ii-----SCPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~ 329 (346)
T TIGR00612 255 RGVEIV-----ACPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPK 329 (346)
T ss_pred CCCeEE-----ECCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEe
Confidence 345555 366665544333333332 2 336888888886542 12235677643 457889999876
Q ss_pred EEeeCC
Q 019115 141 FQFFGE 146 (346)
Q Consensus 141 ~~~~g~ 146 (346)
.+..+.
T Consensus 330 ~kv~~~ 335 (346)
T TIGR00612 330 AKQPET 335 (346)
T ss_pred EecCHH
Confidence 666543
No 419
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=39.79 E-value=38 Score=24.77 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=22.9
Q ss_pred EEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCccc
Q 019115 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116 (346)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~ 116 (346)
..|+.+.|..|++....+++- ++.+-.+|..++
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~~ 34 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA------GIEPEIVEYLKT 34 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEecccC
Confidence 457889999999987665542 455666766543
No 420
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=39.09 E-value=40 Score=24.80 Aligned_cols=33 Identities=9% Similarity=0.100 Sum_probs=23.5
Q ss_pred EEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCccc
Q 019115 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116 (346)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~ 116 (346)
..|+.+.|..|++....+++. ++.+-.+|..++
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~~ 34 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK------GIEPEVVKYLKN 34 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEeccCC
Confidence 457889999999987776652 455666666543
No 421
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=38.51 E-value=1.7e+02 Score=22.04 Aligned_cols=72 Identities=15% Similarity=0.303 Sum_probs=41.6
Q ss_pred eccChhHHHHhhc-c-CCeEEEEEecCCCCc---cHHHHHHHh-ccCCceeEEE---ecCHHHHhhcCCCCCCCCCeEEE
Q 019115 166 SITTTDEAERILT-V-ESKLVLGFLHDLEGM---ESEELAAAS-KLHSDVNFYQ---TTSADVAEFFHIHPKSKRPALIF 236 (346)
Q Consensus 166 ~i~s~~~~~~~~~-~-~~~~~v~f~~~~~~~---~~~~~~~~a-~~~~~~~f~~---~~~~~~~~~~~v~~~~~~p~i~~ 236 (346)
.+.|..+.++.+. + .+.+++-|-.++... ..+.+...+ ....-...+. ..-++..+.|++. ..|++.+
T Consensus 7 ~L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~---~p~tvmf 83 (142)
T KOG3414|consen 7 TLHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELY---DPPTVMF 83 (142)
T ss_pred ccccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhccc---CCceEEE
Confidence 4567777877764 3 344555554444332 444555555 2333333333 3556778888988 4788888
Q ss_pred EecC
Q 019115 237 LHLE 240 (346)
Q Consensus 237 ~~~~ 240 (346)
|-++
T Consensus 84 Ffn~ 87 (142)
T KOG3414|consen 84 FFNN 87 (142)
T ss_pred EEcC
Confidence 8665
No 422
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=38.40 E-value=56 Score=25.40 Aligned_cols=89 Identities=12% Similarity=0.023 Sum_probs=52.6
Q ss_pred cCCCCCCCCCCcCCCcEEcChhcHHHHHcCCCcEEEEEe-cCCChhHhhhhHHHHHHHHHccCCcEEEEEeCc---ccHh
Q 019115 43 NLNNNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY---LEKD 118 (346)
Q Consensus 43 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~v~F~-a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~---~~~~ 118 (346)
.+..|...|.+ .+...+.+.....-..+|..++... +=.-+-|......|.+.+.++.+ +.+..|..| ....
T Consensus 17 ~~~vGd~ap~f---tl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~-~~Vl~IS~DLPFAq~R 92 (158)
T COG2077 17 EPQVGDKAPDF---TLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN-TVVLCISMDLPFAQKR 92 (158)
T ss_pred CCccCCcCCce---EEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC-cEEEEEeCCChhHHhh
Confidence 34556666655 2222222222222234566555544 55678899999999999998875 555555554 4567
Q ss_pred HHHHCCCCCCcEEEEEe
Q 019115 119 LAKEYNILAYPTLYLFV 135 (346)
Q Consensus 119 ~~~~~~i~~~Pt~~~~~ 135 (346)
+|...||..+=++--|+
T Consensus 93 fC~aeGi~nv~~lSd~r 109 (158)
T COG2077 93 FCGAEGIENVITLSDFR 109 (158)
T ss_pred hhhhcCcccceEhhhhh
Confidence 78777777544433333
No 423
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=36.86 E-value=1.5e+02 Score=25.72 Aligned_cols=99 Identities=12% Similarity=0.055 Sum_probs=60.0
Q ss_pred HHHHhhcCCCCCCCCCeEEEEecCCCccccCCC-CCCHHHHHHHH-hccCCCceEeecccchhhhccC----CCcEEEEE
Q 019115 217 ADVAEFFHIHPKSKRPALIFLHLEAGKATPFRH-QFTRLAIANFV-THTKHPLVVTLTIHNAQFVFQD----PRKQLWLF 290 (346)
Q Consensus 217 ~~~~~~~~v~~~~~~p~i~~~~~~~~~~~~y~g-~~~~~~l~~fi-~~~~~p~~~~lt~~~~~~~~~~----~~~~~~~f 290 (346)
++..+.+++.- .|--+.+.. ....+| +++.+++.+.+ +....|--+..++..+.+.++. +...++.+
T Consensus 14 ~~~~~~~~i~v---vPl~i~~~~----~~y~D~~~i~~~efy~~l~~~~~~p~TS~ps~~~~~~~f~~~~~~gyd~ii~i 86 (280)
T PF02645_consen 14 PELAEEYGIYV---VPLNIIIDG----KEYRDGVDISPEEFYEKLRESGEIPKTSQPSPGEFEEAFEKLLEEGYDEIIVI 86 (280)
T ss_dssp HHHHHHTTEEE---E--EEEETT----EEEETTTTSCHHHHHHHHHHTTSEEEEE---HHHHHHHHHHHHHTTTSEEEEE
T ss_pred HHHHHhCCeEE---EeEEEecCC----eEEecCCCCCHHHHHHHHHhcCCCceecCCCHHHHHHHHHHHHHCCCCeEEEE
Confidence 45667778763 565555432 122234 68899999999 4555677788888888877775 55666666
Q ss_pred eeCCCchHHHHHHHHHHHHhcCceEEEEEECCC
Q 019115 291 APAYGSDKVILTFEEVAKALKGKLLHVYVEMNS 323 (346)
Q Consensus 291 ~~~~~~~~~~~~~~~~a~~~~~~~~f~~vd~~~ 323 (346)
.-.+..-..-+....+|+.+ .+..+..+|...
T Consensus 87 ~iSs~LSgty~~a~~aa~~~-~~~~i~ViDS~~ 118 (280)
T PF02645_consen 87 TISSGLSGTYNSARLAAKML-PDIKIHVIDSKS 118 (280)
T ss_dssp ES-TTT-THHHHHHHHHHHH-TTTEEEEEE-SS
T ss_pred eCCcchhhHHHHHHHHHhhc-CcCEEEEEeCCC
Confidence 66655445556777788888 555677777754
No 424
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=36.52 E-value=1.5e+02 Score=21.25 Aligned_cols=20 Identities=25% Similarity=0.683 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCceEEEEE
Q 019115 300 ILTFEEVAKALKGKLLHVYV 319 (346)
Q Consensus 300 ~~~~~~~a~~~~~~~~f~~v 319 (346)
.+++.++|++|.+++.-+++
T Consensus 78 peiY~~ia~~~P~~i~ai~I 97 (100)
T PF09949_consen 78 PEIYAEIARRFPGRILAIYI 97 (100)
T ss_pred HHHHHHHHHHCCCCEEEEEE
Confidence 67888999999999888876
No 425
>PHA02291 hypothetical protein
Probab=36.42 E-value=36 Score=24.37 Aligned_cols=24 Identities=13% Similarity=0.415 Sum_probs=15.6
Q ss_pred CcchhHHHHHHHHHHHHHHHhhcC
Q 019115 1 MEKTKTLLLLLTSSIILFKLYLFP 24 (346)
Q Consensus 1 M~~~~~~~~l~~~~~~~~~l~~~~ 24 (346)
|..+.+++.+++.++++.++++..
T Consensus 1 MS~K~~iFYiL~~~VL~~si~sY~ 24 (132)
T PHA02291 1 MSRKASIFYILVVIVLAFSISSYY 24 (132)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHh
Confidence 666667777766666666665543
No 426
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=36.34 E-value=1.2e+02 Score=23.82 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=22.9
Q ss_pred EEEEEe-CCeeeEEeeCCCCHHHHHHHHH
Q 019115 130 TLYLFV-AGVRQFQFFGERTRDVISAWVR 157 (346)
Q Consensus 130 t~~~~~-~g~~~~~~~g~~~~~~l~~~i~ 157 (346)
++++++ +|++.....|.++.+++.+.+.
T Consensus 127 aiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~ 155 (160)
T PF09695_consen 127 AIIVLDKQGKVQFVKEGALSPAEVQQVIA 155 (160)
T ss_pred eEEEEcCCccEEEEECCCCCHHHHHHHHH
Confidence 466666 8888888889999999988875
No 427
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=35.83 E-value=49 Score=24.55 Aligned_cols=21 Identities=10% Similarity=0.145 Sum_probs=17.0
Q ss_pred EEEEecCCChhHhhhhHHHHH
Q 019115 77 MVMFYANWCYWSKKLAPEFAA 97 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~ 97 (346)
+..|+.|.|..|++....+++
T Consensus 3 itiy~~p~C~t~rka~~~L~~ 23 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEE 23 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 456789999999998877665
No 428
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=35.56 E-value=49 Score=23.06 Aligned_cols=32 Identities=6% Similarity=-0.038 Sum_probs=18.0
Q ss_pred CCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcE
Q 019115 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEAD 107 (346)
Q Consensus 73 ~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~ 107 (346)
-+||+=-. |-|++-+....+-.+.......+.
T Consensus 49 YePWF~Pl---~EPpSGEIESLLFslQaaiGa~II 80 (97)
T COG1930 49 YEPWFQPL---WEPPSGEIESLLFSLQAAIGAGII 80 (97)
T ss_pred CCcccccc---cCCCCccHHHHHHHHHHHhcceee
Confidence 46664333 455666666666666655554333
No 429
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=34.68 E-value=15 Score=27.79 Aligned_cols=71 Identities=15% Similarity=0.273 Sum_probs=42.2
Q ss_pred CChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCC----CCcEEEEEeCCeeeEEeeCCCCHHHHHHHHHHH
Q 019115 84 WCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNIL----AYPTLYLFVAGVRQFQFFGERTRDVISAWVREK 159 (346)
Q Consensus 84 wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~----~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 159 (346)
-||||++..|.+--. +.-+|.+.|.- ..=.++....|+......| +|-.++
T Consensus 11 ~CPhCRQ~ipALtLT-----------------DtYLC~rHGaFEAdP~t~eLVHLqSgR~Wr~W~g--------~WYRQH 65 (163)
T TIGR02652 11 RCPHCRQNIPALTLT-----------------DTYLCNRHGAFEADPETGELVHLQSGRRWRLWEG--------QWYRQH 65 (163)
T ss_pred cCchhhcccchheec-----------------ceeeccCCCccccCCCCCceEEeecCceeeeccc--------hhhhhc
Confidence 599999999876421 12345555432 1234666677766666665 466677
Q ss_pred cCCCceeccChhHHHHhhcc
Q 019115 160 MTLGTYSITTTDEAERILTV 179 (346)
Q Consensus 160 ~~~~~~~i~s~~~~~~~~~~ 179 (346)
+.+.-..+.=-+.++.+-..
T Consensus 66 thpDGiRfEIheaLDrLytq 85 (163)
T TIGR02652 66 THPDGIRFEIHEALDRLFTQ 85 (163)
T ss_pred cCCCceeEeHHHHHHHHHhc
Confidence 76665555444556655533
No 430
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=34.54 E-value=15 Score=27.78 Aligned_cols=71 Identities=14% Similarity=0.240 Sum_probs=41.8
Q ss_pred CChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCC----CCcEEEEEeCCeeeEEeeCCCCHHHHHHHHHHH
Q 019115 84 WCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNIL----AYPTLYLFVAGVRQFQFFGERTRDVISAWVREK 159 (346)
Q Consensus 84 wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~----~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 159 (346)
-||||++..|.+--. +.-+|.+.|.- ..=.++....|+......| +|-.++
T Consensus 8 ~CPhCRq~ipALtLT-----------------DtYLC~rHGaFEAdp~t~eLVHLqSgR~Wr~W~~--------~WyrQH 62 (161)
T PF09654_consen 8 QCPHCRQTIPALTLT-----------------DTYLCPRHGAFEADPKTGELVHLQSGRHWRLWEG--------EWYRQH 62 (161)
T ss_pred cCchhhcccchheec-----------------ceeeccCccccccCCCCCceEEeecCceeeeccc--------hhhhhc
Confidence 599999999877421 12244444432 1234666677765555555 466777
Q ss_pred cCCCceeccChhHHHHhhcc
Q 019115 160 MTLGTYSITTTDEAERILTV 179 (346)
Q Consensus 160 ~~~~~~~i~s~~~~~~~~~~ 179 (346)
+.+.-..+.=-+.++.+-..
T Consensus 63 thpDGiRfEIheaLDrLytq 82 (161)
T PF09654_consen 63 THPDGIRFEIHEALDRLYTQ 82 (161)
T ss_pred cCCCceeEeHHHHHHHHHhc
Confidence 76665555444556555533
No 431
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=34.24 E-value=41 Score=21.50 Aligned_cols=8 Identities=0% Similarity=-0.035 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 019115 7 LLLLLTSS 14 (346)
Q Consensus 7 ~~~l~~~~ 14 (346)
++++++++
T Consensus 41 i~~~~~i~ 48 (59)
T PF09889_consen 41 IFFGIFIL 48 (59)
T ss_pred HHHHHHHH
Confidence 33333333
No 432
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=32.27 E-value=1.4e+02 Score=19.24 Aligned_cols=58 Identities=14% Similarity=0.032 Sum_probs=31.8
Q ss_pred CCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCeeeEEeeCCCCHHHHHHHHHH
Q 019115 83 NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158 (346)
Q Consensus 83 ~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 158 (346)
++|+.|++.+-.+... ++.+-.++++... .-.-..+|++.. +|..+ .+...|.+|+.+
T Consensus 14 s~sp~~~~v~~~L~~~------~i~~~~~~~~~~~----~~p~g~vP~l~~--~g~~l------~es~~I~~yL~~ 71 (72)
T cd03054 14 SLSPECLKVETYLRMA------GIPYEVVFSSNPW----RSPTGKLPFLEL--NGEKI------ADSEKIIEYLKK 71 (72)
T ss_pred CCCHHHHHHHHHHHhC------CCceEEEecCCcc----cCCCcccCEEEE--CCEEE------cCHHHHHHHHhh
Confidence 6899999987666542 3444444444321 112336887753 45321 233667777654
No 433
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=31.66 E-value=2.4e+02 Score=21.64 Aligned_cols=65 Identities=12% Similarity=0.141 Sum_probs=45.3
Q ss_pred CCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCC-cE-EEEEeCCe
Q 019115 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAY-PT-LYLFVAGV 138 (346)
Q Consensus 72 ~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~-Pt-~~~~~~g~ 138 (346)
-+++-.|.+|.--|+-|-.+...+.+.- -++.+.|+.+..+....+....++..- +- +.+.++|+
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~D--~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~ 71 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRRD--QGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQ 71 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHhc--cCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCc
Confidence 3567788899999999999665555432 233799999988887778788776543 44 44444663
No 434
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=31.31 E-value=2.2e+02 Score=21.14 Aligned_cols=51 Identities=4% Similarity=0.085 Sum_probs=30.1
Q ss_pred ceeEEEecCHHHHhhcCCCCC------CCCCeEEEEecCCCccccCCCCCCHHHHHH
Q 019115 208 DVNFYQTTSADVAEFFHIHPK------SKRPALIFLHLEAGKATPFRHQFTRLAIAN 258 (346)
Q Consensus 208 ~~~f~~~~~~~~~~~~~v~~~------~~~p~i~~~~~~~~~~~~y~g~~~~~~l~~ 258 (346)
.+.+....+..+.+.|++... ...|+.+++.+++.....|.|....+++.+
T Consensus 81 ~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~ 137 (140)
T cd03017 81 PFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEE 137 (140)
T ss_pred CceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCCccchHHH
Confidence 444555556678888887631 011788888766555556666655444443
No 435
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=31.14 E-value=2.2e+02 Score=22.47 Aligned_cols=55 Identities=2% Similarity=-0.081 Sum_probs=33.5
Q ss_pred eeEEEecCHHHHhhcCCCCCC---CCCeEEEEecCCCccccCCC----CCCHHHHHHHHhcc
Q 019115 209 VNFYQTTSADVAEFFHIHPKS---KRPALIFLHLEAGKATPFRH----QFTRLAIANFVTHT 263 (346)
Q Consensus 209 ~~f~~~~~~~~~~~~~v~~~~---~~p~i~~~~~~~~~~~~y~g----~~~~~~l~~fi~~~ 263 (346)
+.+....+..+++.|++.... ..|+.+++.+++.....+.+ ..+.+++.+.|+..
T Consensus 95 f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 95 FPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred eeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 344445667888999985221 35788888776533333322 23567788888654
No 436
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=30.33 E-value=1.9e+02 Score=26.25 Aligned_cols=81 Identities=20% Similarity=0.220 Sum_probs=55.4
Q ss_pred CCCcEEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCeeeEEeeCCCCHHH
Q 019115 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDV 151 (346)
Q Consensus 72 ~~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~ 151 (346)
.+..-+=-|++-.|..|-..-..+.-++- ++.++.-..||-.-.++-.+.-+|.++||+++ ||+. .-.|.++.++
T Consensus 115 ~g~~~FETy~SltC~nCPDVVQALN~msv-lNp~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nGe~--fg~GRmtlee 189 (520)
T COG3634 115 DGDFHFETYFSLTCHNCPDVVQALNLMSV-LNPRIKHTAIDGALFQDEVEARNIMAVPTVFL--NGEE--FGQGRMTLEE 189 (520)
T ss_pred CCceeEEEEEEeeccCChHHHHHHHHHHh-cCCCceeEEecchhhHhHHHhccceecceEEE--cchh--hcccceeHHH
Confidence 45566777778888888766666655443 34478888888766666667779999999876 7743 2347777777
Q ss_pred HHHHHH
Q 019115 152 ISAWVR 157 (346)
Q Consensus 152 l~~~i~ 157 (346)
|..-+.
T Consensus 190 ilaki~ 195 (520)
T COG3634 190 ILAKID 195 (520)
T ss_pred HHHHhc
Confidence 665443
No 437
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=29.65 E-value=2.5e+02 Score=21.16 Aligned_cols=46 Identities=4% Similarity=0.006 Sum_probs=27.8
Q ss_pred cCCceeEEEecCHHHHhhcCCCCC------CCCCeEEEEecCCCccccCCCC
Q 019115 205 LHSDVNFYQTTSADVAEFFHIHPK------SKRPALIFLHLEAGKATPFRHQ 250 (346)
Q Consensus 205 ~~~~~~f~~~~~~~~~~~~~v~~~------~~~p~i~~~~~~~~~~~~y~g~ 250 (346)
....+.+....+..+.+.+++.-. ..+|+.+++.+++.......|.
T Consensus 83 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~ 134 (146)
T PF08534_consen 83 YGINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGP 134 (146)
T ss_dssp TTTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESS
T ss_pred hCCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCC
Confidence 344555656667788888886500 0379988887765333333344
No 438
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=29.62 E-value=2.9e+02 Score=22.92 Aligned_cols=73 Identities=21% Similarity=0.279 Sum_probs=50.7
Q ss_pred EecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCeeeEEeeCCCCHHHHHHHHHHH
Q 019115 80 FYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREK 159 (346)
Q Consensus 80 F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 159 (346)
|....|..|-.....+++- -+-+++.+ ++....+.++-+-+|-++|.+++ +|+. .|-++.+++.+.+.+...
T Consensus 16 ~~HktC~ssy~Lf~~L~nk--gll~~Vki--i~a~~p~f~~~~~~V~SvP~Vf~--DGel--~~~dpVdp~~ies~~~G~ 87 (265)
T COG5494 16 FTHKTCVSSYMLFEYLENK--GLLGKVKI--IDAELPPFLAFEKGVISVPSVFI--DGEL--VYADPVDPEEIESILSGQ 87 (265)
T ss_pred EEecchHHHHHHHHHHHhc--CCCCCceE--EEcCCChHHHhhcceeecceEEE--cCeE--EEcCCCCHHHHHHHHcCc
Confidence 5567788888775555431 11125555 66677777888888999999754 8854 466889999999888765
Q ss_pred c
Q 019115 160 M 160 (346)
Q Consensus 160 ~ 160 (346)
.
T Consensus 88 ~ 88 (265)
T COG5494 88 V 88 (265)
T ss_pred c
Confidence 3
No 439
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=28.47 E-value=97 Score=27.70 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=45.5
Q ss_pred CcEEEEEeCcccHhHHHHCCCCCCcEEEEEe--CCeeeEEeeCCCCHHHHHHHHHHHcC
Q 019115 105 EADLVMVDAYLEKDLAKEYNILAYPTLYLFV--AGVRQFQFFGERTRDVISAWVREKMT 161 (346)
Q Consensus 105 ~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~--~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (346)
....+..|..+...+..-|.+...|.+.+++ -|+.+.+..|...++++.+-+.+.+.
T Consensus 132 ~wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~ 190 (356)
T KOG1364|consen 132 RWLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFID 190 (356)
T ss_pred eEEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHh
Confidence 3444556666777888999999999999998 78888888898888888888877763
No 440
>PRK13617 psbV cytochrome c-550; Provisional
Probab=28.37 E-value=40 Score=26.82 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=19.3
Q ss_pred CCcCCCcEEcChhcHHHHHcCCCcEEEEEecCCChhHhhh
Q 019115 52 LLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKL 91 (346)
Q Consensus 52 ~~~~~~v~~l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~ 91 (346)
..+......++.+++. .++-+ | ...|..|+.-
T Consensus 45 ~~~~g~~~~~s~~~~~----~G~~~---F-~~~C~~CH~~ 76 (170)
T PRK13617 45 ADPSGSQVTFSESEIK----AGRKV---F-NTSCGTCHAG 76 (170)
T ss_pred cCCCCCeEEeCHHHHH----HHHHH---H-HcchhhhccC
Confidence 3344556677776654 33333 3 7789999843
No 441
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=27.85 E-value=2.7e+02 Score=21.10 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=22.7
Q ss_pred EEEecCHHHHhhcCCCCCCCCCeEEEEecC
Q 019115 211 FYQTTSADVAEFFHIHPKSKRPALIFLHLE 240 (346)
Q Consensus 211 f~~~~~~~~~~~~~v~~~~~~p~i~~~~~~ 240 (346)
.+..-++.+.++|+|+. .|++++.+.+
T Consensus 55 ~~v~IdP~lF~~f~I~~---VPa~V~~~~~ 81 (130)
T TIGR02742 55 SGVQIDPQWFKQFDITA---VPAFVVVKDG 81 (130)
T ss_pred CcEEEChHHHhhcCceE---cCEEEEECCC
Confidence 45567999999999994 8999998865
No 442
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=27.54 E-value=1.7e+02 Score=21.91 Aligned_cols=42 Identities=12% Similarity=0.052 Sum_probs=29.6
Q ss_pred CCcEEEEEe--eCCC-chHHHHHHHHHHHHhcC-ceEEEEEECCCc
Q 019115 283 PRKQLWLFA--PAYG-SDKVILTFEEVAKALKG-KLLHVYVEMNSE 324 (346)
Q Consensus 283 ~~~~~~~f~--~~~~-~~~~~~~~~~~a~~~~~-~~~f~~vd~~~~ 324 (346)
+.+++++|. .++. +......|.++.+++++ .+.++-|..++.
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~ 68 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP 68 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence 345556554 4565 88888999999999874 477777766553
No 443
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=27.15 E-value=80 Score=25.98 Aligned_cols=38 Identities=21% Similarity=0.424 Sum_probs=25.4
Q ss_pred hHHHHCCCCCCcEEEEEeC-CeeeEEeeCCCCHHHHHHHH
Q 019115 118 DLAKEYNILAYPTLYLFVA-GVRQFQFFGERTRDVISAWV 156 (346)
Q Consensus 118 ~~~~~~~i~~~Pt~~~~~~-g~~~~~~~g~~~~~~l~~~i 156 (346)
+-+.+.||.|+|++++=++ | ....|-|.---+.+.+++
T Consensus 170 ~~A~~~Gv~GVP~fvv~~~~~-~~e~fwG~Drl~~~~~~l 208 (209)
T cd03021 170 DEALKYGAFGLPWIVVTNDKG-KTEMFFGSDRFEQVADFL 208 (209)
T ss_pred HHHHHcCCCCCCEEEEEcCCC-CccceecCCcHHHHHHHh
Confidence 4456789999999988542 4 335677776666555544
No 444
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=27.11 E-value=97 Score=22.42 Aligned_cols=31 Identities=13% Similarity=0.095 Sum_probs=20.3
Q ss_pred EecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCccc
Q 019115 80 FYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116 (346)
Q Consensus 80 F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~ 116 (346)
|+.+.|..|++....+++- ++.+-.+|..+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~------gi~~~~~d~~k~ 31 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN------GIEYEFIDYKKE 31 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT------T--EEEEETTTS
T ss_pred CcCCCCHHHHHHHHHHHHc------CCCeEeehhhhC
Confidence 5678999999988777652 566777887664
No 445
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=26.98 E-value=76 Score=22.24 Aligned_cols=28 Identities=11% Similarity=0.019 Sum_probs=13.5
Q ss_pred CCcEEEEEecCCChhHhhhhHHHHHHHHHcc
Q 019115 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLK 103 (346)
Q Consensus 73 ~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~ 103 (346)
-+||+=-+|-| +.-+...-+-.+..-..
T Consensus 51 Y~PWf~PlwEP---psGEiESlLFaLQAaiG 78 (91)
T TIGR01165 51 YKPWFSPLWEP---PSGEIESLLFALQAALG 78 (91)
T ss_pred CcccccccccC---CcchHHHHHHHHHHHhh
Confidence 45665444443 44455555544444433
No 446
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=25.48 E-value=2.4e+02 Score=22.36 Aligned_cols=86 Identities=12% Similarity=0.128 Sum_probs=43.5
Q ss_pred HHHHHHHcCCCceecc-ChhHHHHhhccCCeEEEEEecCCCCccH----HHHH--HHhc----cCCceeEEEecCHHHHh
Q 019115 153 SAWVREKMTLGTYSIT-TTDEAERILTVESKLVLGFLHDLEGMES----EELA--AASK----LHSDVNFYQTTSADVAE 221 (346)
Q Consensus 153 ~~~i~~~~~~~~~~i~-s~~~~~~~~~~~~~~~v~f~~~~~~~~~----~~~~--~~a~----~~~~~~f~~~~~~~~~~ 221 (346)
.-++.++...+|.=.. +.+.++....++++.+|.+..++|.... +.|. ++|. ..-.+++.....+++..
T Consensus 9 Spyl~~ha~~~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~ 88 (163)
T PF03190_consen 9 SPYLRQHAHNPVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDK 88 (163)
T ss_dssp -HHHHTTTTSSS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHH
T ss_pred CHHHHHhccCCCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHH
Confidence 3467777777774333 4567888888899999999999987521 2222 1221 11122233334456665
Q ss_pred hc--------CCCCCCCCCeEEEEecCC
Q 019115 222 FF--------HIHPKSKRPALIFLHLEA 241 (346)
Q Consensus 222 ~~--------~v~~~~~~p~i~~~~~~~ 241 (346)
.| |.. ++|..++..++.
T Consensus 89 ~y~~~~~~~~~~g---GwPl~vfltPdg 113 (163)
T PF03190_consen 89 IYMNAVQAMSGSG---GWPLTVFLTPDG 113 (163)
T ss_dssp HHHHHHHHHHS------SSEEEEE-TTS
T ss_pred HHHHHHHHhcCCC---CCCceEEECCCC
Confidence 55 343 688888887653
No 447
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=24.64 E-value=1.5e+02 Score=22.06 Aligned_cols=52 Identities=21% Similarity=0.266 Sum_probs=37.5
Q ss_pred CCChhHhhhhHHHHHHHHHccC-------CcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCee
Q 019115 83 NWCYWSKKLAPEFAAAAKMLKG-------EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR 139 (346)
Q Consensus 83 ~wC~~C~~~~p~~~~~~~~~~~-------~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 139 (346)
..|..|......+.++.++++. .+.+-.+.++. .++++++ -.-|++.+ +|+.
T Consensus 13 ~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~-~~~~~~~--~~S~~I~i--nG~p 71 (120)
T PF10865_consen 13 KTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDE-EEFARQP--LESPTIRI--NGRP 71 (120)
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECCh-HHHhhcc--cCCCeeeE--CCEe
Confidence 3799999999888877766443 56677777766 4677777 66788766 6643
No 448
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=24.37 E-value=73 Score=30.38 Aligned_cols=75 Identities=16% Similarity=0.274 Sum_probs=53.5
Q ss_pred cChhcHHHHHcCCCcEEEEEecCCChhHhhhhHH-H--HHHHHHccCCcEEEEEeCcccHhHHH--------HCCCCCCc
Q 019115 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPE-F--AAAAKMLKGEADLVMVDAYLEKDLAK--------EYNILAYP 129 (346)
Q Consensus 61 l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~-~--~~~~~~~~~~v~~~~v~~~~~~~~~~--------~~~i~~~P 129 (346)
-..+.|++...++||+++...-+.|..|..+..+ | ++.++.+.+++.-++||-++-+++-+ ..|--++|
T Consensus 100 wgqeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGWP 179 (786)
T KOG2244|consen 100 WGQEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGWP 179 (786)
T ss_pred chHHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCCc
Confidence 3567888888999999999998889999877642 2 22445554466666777777666544 45677888
Q ss_pred EEEEEe
Q 019115 130 TLYLFV 135 (346)
Q Consensus 130 t~~~~~ 135 (346)
.-++..
T Consensus 180 msV~LT 185 (786)
T KOG2244|consen 180 MSVFLT 185 (786)
T ss_pred eeEEeC
Confidence 877765
No 449
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=24.25 E-value=2.4e+02 Score=21.13 Aligned_cols=40 Identities=10% Similarity=0.091 Sum_probs=28.5
Q ss_pred CCcEEEEEee-C-CC-chHHHHHHHHHHHHhcCceEEEEEECCC
Q 019115 283 PRKQLWLFAP-A-YG-SDKVILTFEEVAKALKGKLLHVYVEMNS 323 (346)
Q Consensus 283 ~~~~~~~f~~-~-~~-~~~~~~~~~~~a~~~~~~~~f~~vd~~~ 323 (346)
++++++.|.+ + +. +......|.++.++++ .+.++-+..++
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~ 68 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADL 68 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCC
Confidence 4566676665 3 23 8888999999999885 57777776654
No 450
>PRK09810 entericidin A; Provisional
Probab=23.45 E-value=1e+02 Score=18.09 Aligned_cols=6 Identities=33% Similarity=0.147 Sum_probs=2.8
Q ss_pred CcchhH
Q 019115 1 MEKTKT 6 (346)
Q Consensus 1 M~~~~~ 6 (346)
|+|+.+
T Consensus 1 mMkk~~ 6 (41)
T PRK09810 1 MMKRLI 6 (41)
T ss_pred ChHHHH
Confidence 545443
No 451
>PRK13190 putative peroxiredoxin; Provisional
Probab=23.36 E-value=3e+02 Score=22.53 Aligned_cols=56 Identities=4% Similarity=-0.006 Sum_probs=34.7
Q ss_pred eeEEEecCHHHHhhcCCCCC---CCCCeEEEEecCCCccc--cC--CCCCCHHHHHHHHhccC
Q 019115 209 VNFYQTTSADVAEFFHIHPK---SKRPALIFLHLEAGKAT--PF--RHQFTRLAIANFVTHTK 264 (346)
Q Consensus 209 ~~f~~~~~~~~~~~~~v~~~---~~~p~i~~~~~~~~~~~--~y--~g~~~~~~l~~fi~~~~ 264 (346)
+......+..+++.||+... ...|+.+++.+++.... .| .+..+.+++.+.|....
T Consensus 92 fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 92 FPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred EEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 34444567789999998411 13699888876542221 12 23457788888887543
No 452
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=23.34 E-value=2.2e+02 Score=24.12 Aligned_cols=24 Identities=8% Similarity=0.112 Sum_probs=11.7
Q ss_pred CcEEcChhcHHHHHcCCCcEEEEE
Q 019115 57 DVVSLNGKNFSEFMGKNRNVMVMF 80 (346)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~~v~F 80 (346)
.|..++-+++++.+...+|..|.|
T Consensus 45 ~~~~~~~~~~~~~~~~~~p~aViF 68 (237)
T TIGR01672 45 PIHWISVAQIENSLEGRPPIAVSF 68 (237)
T ss_pred CeeEEEHHHHHHhcCCCCCeEEEE
Confidence 455555555555554444433333
No 453
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=23.23 E-value=2e+02 Score=21.73 Aligned_cols=39 Identities=5% Similarity=0.091 Sum_probs=23.6
Q ss_pred CcEEEEEe--eCCC-chHHHHHHHHHHHHhcC-ceEEEEEECC
Q 019115 284 RKQLWLFA--PAYG-SDKVILTFEEVAKALKG-KLLHVYVEMN 322 (346)
Q Consensus 284 ~~~~~~f~--~~~~-~~~~~~~~~~~a~~~~~-~~~f~~vd~~ 322 (346)
++++++|. .++. +......+.++++++++ ++.++.+..+
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 71 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVD 71 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCC
Confidence 45555443 3444 77777788888887764 3555555443
No 454
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=23.20 E-value=2.7e+02 Score=21.85 Aligned_cols=54 Identities=13% Similarity=0.234 Sum_probs=32.9
Q ss_pred CCcEEEEEeeC--CC-chHHHHHHHHHHHHhcCceEEEEEECCCcccccchhhhcCCC
Q 019115 283 PRKQLWLFAPA--YG-SDKVILTFEEVAKALKGKLLHVYVEMNSEGVGRRVSQEFGVS 337 (346)
Q Consensus 283 ~~~~~~~f~~~--~~-~~~~~~~~~~~a~~~~~~~~f~~vd~~~~~~~~~~~~~~gi~ 337 (346)
++++++.|.+. +. |......|.++++++. .+.++-+..+...-..++.+.+|+.
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~~~ 100 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEGLE 100 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCCCC
Confidence 45666666553 33 7888888888888874 5555555554422244566666653
No 455
>PHA02151 hypothetical protein
Probab=23.16 E-value=48 Score=25.69 Aligned_cols=15 Identities=40% Similarity=1.070 Sum_probs=12.2
Q ss_pred CCCcEEEEEecCCCh
Q 019115 72 KNRNVMVMFYANWCY 86 (346)
Q Consensus 72 ~~~~~~v~F~a~wC~ 86 (346)
.+..-+|+||..||.
T Consensus 202 r~h~~~v~fy~kwct 216 (217)
T PHA02151 202 RNHDRYVHFYKKWCT 216 (217)
T ss_pred ccCceEEEEehhhcc
Confidence 445679999999995
No 456
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=23.09 E-value=1e+02 Score=19.68 Aligned_cols=15 Identities=47% Similarity=0.554 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHh
Q 019115 7 LLLLLTSSIILFKLY 21 (346)
Q Consensus 7 ~~~l~~~~~~~~~l~ 21 (346)
.++|+++++++++-+
T Consensus 11 riVLLISfiIlfgRl 25 (59)
T PF11119_consen 11 RIVLLISFIILFGRL 25 (59)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666666633
No 457
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=22.71 E-value=2.2e+02 Score=18.37 Aligned_cols=70 Identities=13% Similarity=0.126 Sum_probs=40.2
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCc----ccHhHHHHCCCCCCcEEEEEeCCeeeEEeeCCCCHHHH
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY----LEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVI 152 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~----~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l 152 (346)
+..|+.+.|+.|++..-.+....- .+....++.. ..+++.+......+|++. .+|.. -.....|
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i----~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~--~~g~~------l~es~aI 69 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGV----DYELVPVDLTKGEHKSPEHLARNPFGQIPALE--DGDLK------LFESRAI 69 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCC----CcEEEEeCccccccCCHHHHhhCCCCCCCEEE--ECCEE------EEcHHHH
Confidence 345556779999887655554322 3445555542 134556666667799874 45532 2345666
Q ss_pred HHHHHH
Q 019115 153 SAWVRE 158 (346)
Q Consensus 153 ~~~i~~ 158 (346)
.+|+.+
T Consensus 70 ~~yL~~ 75 (76)
T cd03053 70 TRYLAE 75 (76)
T ss_pred HHHHhh
Confidence 766643
No 458
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.42 E-value=1.9e+02 Score=21.14 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=14.2
Q ss_pred HHHHcCCCcEEEEEecCCChh
Q 019115 67 SEFMGKNRNVMVMFYANWCYW 87 (346)
Q Consensus 67 ~~~~~~~~~~~v~F~a~wC~~ 87 (346)
+..-.+|+-.-|.|.|+.--+
T Consensus 59 ~ayn~~Gkkk~v~f~a~~~lr 79 (113)
T COG5294 59 TAYNKNGKKKEVKFTATHNLR 79 (113)
T ss_pred hhhccCCcEEEEEEEecCcCC
Confidence 334457788888998876443
No 459
>PRK13620 psbV cytochrome c-550; Provisional
Probab=22.35 E-value=36 Score=27.85 Aligned_cols=31 Identities=29% Similarity=0.292 Sum_probs=18.3
Q ss_pred CCcCCCcEEcChhcHHHHHcCCCcEEEEEecCCChhHhh
Q 019115 52 LLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKK 90 (346)
Q Consensus 52 ~~~~~~v~~l~~~~~~~~~~~~~~~~v~F~a~wC~~C~~ 90 (346)
..+......++.++... ++-+ | ..||..|+.
T Consensus 90 ln~~G~tvtfS~eq~~~----GkqL---F-~~~Ca~CHV 120 (215)
T PRK13620 90 LNPQGDNVTLSLKQVAE----GKQL---F-AYACGQCHV 120 (215)
T ss_pred eCCCCCeecCCHHHHHH----HHHH---H-HhhhhhccC
Confidence 33344555666665543 3333 2 889999983
No 460
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=22.28 E-value=2.9e+02 Score=19.46 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=26.8
Q ss_pred ccCCCcEEEEEeeCCCchHHHHHHHHHHHHhcCceEEEEEEC
Q 019115 280 FQDPRKQLWLFAPAYGSDKVILTFEEVAKALKGKLLHVYVEM 321 (346)
Q Consensus 280 ~~~~~~~~~~f~~~~~~~~~~~~~~~~a~~~~~~~~f~~vd~ 321 (346)
....+..+|-|..+.+..++ ..|+++|..+++...|...=+
T Consensus 13 id~~kr~iIgYF~~~~~~eY-~~f~kvA~~lr~dC~F~v~~G 53 (91)
T cd03070 13 VDRSKRNIIGYFESKDSDEY-DNFRKVANILRDDCSFLVGFG 53 (91)
T ss_pred hCcCCceEEEEEcCCCChhH-HHHHHHHHHHhhcCeEEEEec
Confidence 34445666665555444444 689999999999866655543
No 461
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=22.10 E-value=1.2e+02 Score=22.77 Aligned_cols=34 Identities=12% Similarity=0.213 Sum_probs=22.8
Q ss_pred EEEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcc
Q 019115 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL 115 (346)
Q Consensus 76 ~~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~ 115 (346)
.+..|+-|.|..|++....+++- ++.+-.+|.-+
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~------gi~~~~~d~~~ 35 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKAS------GHDVEVQDILK 35 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHC------CCCcEEEeccC
Confidence 34567789999999987666643 45555555543
No 462
>PRK10853 putative reductase; Provisional
Probab=21.79 E-value=1.1e+02 Score=22.77 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=23.6
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCccc
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~ 116 (346)
+..|+.+.|..|++....+++- ++.+-.+|.-++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~------~i~~~~~d~~k~ 35 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ------GIDYRFHDYRVD 35 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc------CCCcEEeehccC
Confidence 3457789999999987766642 466666766543
No 463
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=21.68 E-value=4e+02 Score=20.81 Aligned_cols=59 Identities=10% Similarity=0.148 Sum_probs=34.8
Q ss_pred CCeEEEEEecCCCC----ccHHHHHHHh-ccCCceeEEEecCHHHHhhcCCCCCCCCCeEEEEecCC
Q 019115 180 ESKLVLGFLHDLEG----MESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEA 241 (346)
Q Consensus 180 ~~~~~v~f~~~~~~----~~~~~~~~~a-~~~~~~~f~~~~~~~~~~~~~v~~~~~~p~i~~~~~~~ 241 (346)
.+..++++..+... ...+.+...+ +....+.+....+..+.+.|++. ..|+++++.+++
T Consensus 57 ~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~---~~P~~~lid~~G 120 (171)
T cd02969 57 KGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAKAYGAA---CTPDFFLFDPDG 120 (171)
T ss_pred CCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHHHcCCC---cCCcEEEECCCC
Confidence 44555655433210 1233444333 33344666666777899999997 479999887654
No 464
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=21.60 E-value=1.3e+02 Score=21.62 Aligned_cols=29 Identities=10% Similarity=-0.038 Sum_probs=14.8
Q ss_pred CCcEEEEEecCCChhHhhhhHHHHHHHHHccC
Q 019115 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG 104 (346)
Q Consensus 73 ~~~~~v~F~a~wC~~C~~~~p~~~~~~~~~~~ 104 (346)
-+||+=-+|- ||.-+...-+-.+..-...
T Consensus 51 Y~PWf~PlwE---PPsGEiESLLFaLQAAiGA 79 (100)
T PRK02898 51 YEPWFEPLWE---PPSGEIESLLFALQAALGA 79 (100)
T ss_pred Cccccccccc---CCcchHHHHHHHHHHHHhh
Confidence 4566544443 4455555555555544443
No 465
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=21.57 E-value=1.4e+02 Score=25.11 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=31.3
Q ss_pred cCHHHHhhcCCCCCCCCCeEEEEecCCCccccCCCCCCHHHHHHHHhcc
Q 019115 215 TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHT 263 (346)
Q Consensus 215 ~~~~~~~~~~v~~~~~~p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~ 263 (346)
.+..+++.+|++ +-|+++ +.++ + ...|..+.+.|..+|...
T Consensus 190 ~~~~la~~lgi~---gTPtiv-~~~G--~--~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 190 DHYALGVQFGVQ---GTPAIV-LSNG--T--LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred HhHHHHHHcCCc---cccEEE-EcCC--e--EeeCCCCHHHHHHHHHHc
Confidence 456789999998 589988 5443 2 347888899999999754
No 466
>PF15284 PAGK: Phage-encoded virulence factor
Probab=21.54 E-value=1.2e+02 Score=19.38 Aligned_cols=14 Identities=36% Similarity=0.434 Sum_probs=7.1
Q ss_pred CcchhHHHHHHHHH
Q 019115 1 MEKTKTLLLLLTSS 14 (346)
Q Consensus 1 M~~~~~~~~l~~~~ 14 (346)
|+|.+-+++.++.+
T Consensus 1 Mkk~ksifL~l~~~ 14 (61)
T PF15284_consen 1 MKKFKSIFLALVFI 14 (61)
T ss_pred ChHHHHHHHHHHHH
Confidence 77665444443333
No 467
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=21.47 E-value=73 Score=25.52 Aligned_cols=37 Identities=11% Similarity=0.125 Sum_probs=15.9
Q ss_pred cCHHHHhhcCCCCCCCCCeEEEEecCC-CccccCCCCCCHH
Q 019115 215 TSADVAEFFHIHPKSKRPALIFLHLEA-GKATPFRHQFTRL 254 (346)
Q Consensus 215 ~~~~~~~~~~v~~~~~~p~i~~~~~~~-~~~~~y~g~~~~~ 254 (346)
.+..++...+|+ ++||++++.... +.....+|..+.+
T Consensus 135 ~D~~la~~m~I~---~~Ptlvi~~~~~~~~g~~i~g~~~~~ 172 (176)
T PF13743_consen 135 EDQQLAREMGIT---GFPTLVIFNENNEEYGILIEGYYSYE 172 (176)
T ss_dssp HHHHHHHHTT-S---SSSEEEEE------------------
T ss_pred HHHHHHHHcCCC---CCCEEEEEeccccccccccccccccc
Confidence 355788999998 599999998332 3445555554433
No 468
>TIGR01655 yxeA_fam conserved hypothetical protein TIGR01655. This model represents a family of small (about 115 amino acids) uncharacterized proteins with N-terminal signal sequences, found exclusively in Gram-positive organisms. Most genomes that have any members of this family have at least two members.
Probab=21.33 E-value=79 Score=23.30 Aligned_cols=12 Identities=25% Similarity=0.340 Sum_probs=7.3
Q ss_pred CCCcEEEEEecC
Q 019115 72 KNRNVMVMFYAN 83 (346)
Q Consensus 72 ~~~~~~v~F~a~ 83 (346)
+++---+.|.++
T Consensus 65 ~G~~k~i~f~~~ 76 (114)
T TIGR01655 65 SGKKHKVKFMAG 76 (114)
T ss_pred CCCEEEEEEEcC
Confidence 456666666654
No 469
>PRK15000 peroxidase; Provisional
Probab=21.29 E-value=2.9e+02 Score=22.63 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=28.9
Q ss_pred CCCcEEEEEeeCC--C-chHHHHHHHHHHHHhcC-ceEEEEEECCC
Q 019115 282 DPRKQLWLFAPAY--G-SDKVILTFEEVAKALKG-KLLHVYVEMNS 323 (346)
Q Consensus 282 ~~~~~~~~f~~~~--~-~~~~~~~~~~~a~~~~~-~~~f~~vd~~~ 323 (346)
.+++++++|.+.. . +......|.+.+.++++ .+.++-+..++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~ 78 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDS 78 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 3457788888752 2 77888889999888874 35555555553
No 470
>PRK10026 arsenate reductase; Provisional
Probab=21.03 E-value=1.2e+02 Score=23.37 Aligned_cols=33 Identities=6% Similarity=0.105 Sum_probs=22.5
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcc
Q 019115 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL 115 (346)
Q Consensus 77 ~v~F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~ 115 (346)
+..|+.|.|..|++....+++- ++.|-.+|.-+
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~------gi~~~~~d~~~ 36 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS------GTEPTIIHYLE 36 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCcEEEeeeC
Confidence 4467789999999987766643 45555566543
No 471
>COG3411 Ferredoxin [Energy production and conversion]
Probab=21.00 E-value=2.2e+02 Score=18.53 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=23.5
Q ss_pred CcEEEEEeCCeeeEEeeCCCCHHHHHHHHHHHc
Q 019115 128 YPTLYLFVAGVRQFQFFGERTRDVISAWVREKM 160 (346)
Q Consensus 128 ~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (346)
=|++++|.+| ...+..+.+...+.+++++
T Consensus 17 gPvl~vYpeg----vWY~~V~p~~a~rIv~~hl 45 (64)
T COG3411 17 GPVLVVYPEG----VWYTRVDPEDARRIVQSHL 45 (64)
T ss_pred CCEEEEecCC----eeEeccCHHHHHHHHHHHH
Confidence 4999999999 3446688888899998887
No 472
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=20.73 E-value=2e+02 Score=22.65 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=23.6
Q ss_pred ceeEEEecCHHHHhhcCCCCCCCCCeEEEEecCC
Q 019115 208 DVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEA 241 (346)
Q Consensus 208 ~~~f~~~~~~~~~~~~~v~~~~~~p~i~~~~~~~ 241 (346)
.+.|+.....++..+|++. +.|++++.++++
T Consensus 96 ~iPf~d~~~~~l~~ky~v~---~iP~l~i~~~dG 126 (157)
T KOG2501|consen 96 AIPFGDDLIQKLSEKYEVK---GIPALVILKPDG 126 (157)
T ss_pred EecCCCHHHHHHHHhcccC---cCceeEEecCCC
Confidence 3455555667888999998 599999988764
No 473
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=20.73 E-value=1.2e+02 Score=25.07 Aligned_cols=26 Identities=15% Similarity=0.080 Sum_probs=19.7
Q ss_pred cccHhHHHHCCCCCCcEEEE-EeCCee
Q 019115 114 YLEKDLAKEYNILAYPTLYL-FVAGVR 139 (346)
Q Consensus 114 ~~~~~~~~~~~i~~~Pt~~~-~~~g~~ 139 (346)
+..+.++++|||+.+|+++- ..+|+.
T Consensus 170 dQ~G~Lt~rF~I~~VPAvV~~~q~G~~ 196 (209)
T PRK13738 170 DQNGVLCQRFGIDQVPARVSAVPGGRF 196 (209)
T ss_pred cCcchHHHhcCCeeeceEEEEcCCCCE
Confidence 44567999999999999875 256643
No 474
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=20.55 E-value=3.1e+02 Score=19.21 Aligned_cols=67 Identities=16% Similarity=0.143 Sum_probs=39.6
Q ss_pred CCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccH-hHHHHCCCCCCcEEEEEeCCeeeEEeeCCCCHHHHHHHHHHHcC
Q 019115 83 NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-DLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMT 161 (346)
Q Consensus 83 ~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~-~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (346)
.+|++|++.+=.+.+. +-...+..||....+ .+.+..-...+|++. .+|..+ .+...|.+++.+...
T Consensus 20 g~cpf~~rvrl~L~eK----gi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~~~i------~eS~~I~eYLde~~~ 87 (91)
T cd03061 20 GNCPFCQRLFMVLWLK----GVVFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNGEVK------TDNNKIEEFLEETLC 87 (91)
T ss_pred CCChhHHHHHHHHHHC----CCceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECCEEe------cCHHHHHHHHHHHcc
Confidence 5799999876444432 114455666655544 444444456789654 455322 466788888887653
No 475
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=20.32 E-value=1.6e+02 Score=23.65 Aligned_cols=44 Identities=14% Similarity=0.082 Sum_probs=36.6
Q ss_pred CCCcEEEEEec--CCChhHhhhhHHHHHHHHHccC-CcEEEEEeCcc
Q 019115 72 KNRNVMVMFYA--NWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL 115 (346)
Q Consensus 72 ~~~~~~v~F~a--~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~ 115 (346)
-+..|.|.|-. +.-|-|-.+...+.+++-++.+ ++..+...|+.
T Consensus 30 ~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~ 76 (224)
T KOG0854|consen 30 LGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDD 76 (224)
T ss_pred cccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhh
Confidence 35678888884 5678999999999999999877 89999998874
No 476
>PRK10387 glutaredoxin 2; Provisional
Probab=20.26 E-value=4.4e+02 Score=21.24 Aligned_cols=72 Identities=14% Similarity=0.079 Sum_probs=39.8
Q ss_pred EecCCChhHhhhhHHHHHHHHHccCCcEEEEEeCcccHhHHHHCCCCCCcEEEEEeCCeeeEEeeCCCCHHHHHHHHHHH
Q 019115 80 FYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREK 159 (346)
Q Consensus 80 F~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 159 (346)
++.+.|++|.+.+=.+....- .+....++..+.....+..+...+|++.. ++|.. -.+...|..++.+.
T Consensus 4 y~~~~sp~~~kv~~~L~~~gi----~y~~~~~~~~~~~~~~~~~p~~~VPvL~~-~~g~~------l~eS~aI~~yL~~~ 72 (210)
T PRK10387 4 YIYDHCPFCVKARMIFGLKNI----PVELIVLANDDEATPIRMIGQKQVPILQK-DDGSY------MPESLDIVHYIDEL 72 (210)
T ss_pred EeCCCCchHHHHHHHHHHcCC----CeEEEEcCCCchhhHHHhcCCcccceEEe-cCCeE------ecCHHHHHHHHHHh
Confidence 456779999987655443321 33444444333222222233456888743 34522 23578899999887
Q ss_pred cCC
Q 019115 160 MTL 162 (346)
Q Consensus 160 ~~~ 162 (346)
.+.
T Consensus 73 ~~~ 75 (210)
T PRK10387 73 DGK 75 (210)
T ss_pred CCC
Confidence 643
Done!