Query 019117
Match_columns 346
No_of_seqs 544 out of 1522
Neff 11.9
Searched_HMMs 46136
Date Fri Mar 29 06:49:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019117.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019117hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 3.7E-50 8E-55 307.5 25.5 297 21-345 103-464 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 4.6E-48 1E-52 299.3 19.6 250 21-319 205-458 (459)
3 KOG0272 U4/U6 small nuclear ri 100.0 3.6E-46 7.8E-51 288.9 19.9 276 23-346 165-444 (459)
4 KOG0286 G-protein beta subunit 100.0 8.9E-44 1.9E-48 263.3 30.7 276 19-345 41-328 (343)
5 KOG0271 Notchless-like WD40 re 100.0 4.9E-45 1.1E-49 279.5 21.4 250 24-319 148-479 (480)
6 KOG0279 G protein beta subunit 100.0 3.3E-43 7.2E-48 258.7 29.2 274 22-345 4-296 (315)
7 KOG0295 WD40 repeat-containing 100.0 2.3E-41 4.9E-46 257.7 22.0 278 17-345 92-389 (406)
8 KOG0279 G protein beta subunit 100.0 1E-39 2.2E-44 240.4 28.5 271 9-322 39-314 (315)
9 KOG0273 Beta-transducin family 100.0 1.6E-40 3.4E-45 261.1 25.7 261 33-346 235-507 (524)
10 KOG0285 Pleiotropic regulator 100.0 2.3E-40 4.9E-45 252.0 24.3 259 16-327 134-395 (460)
11 KOG0263 Transcription initiati 100.0 1E-40 2.2E-45 277.7 23.7 249 28-322 373-650 (707)
12 KOG0315 G-protein beta subunit 100.0 1.4E-39 3E-44 236.0 25.9 267 21-329 28-296 (311)
13 KOG0276 Vesicle coat complex C 100.0 4.3E-40 9.3E-45 267.3 24.9 269 25-343 5-280 (794)
14 KOG0265 U5 snRNP-specific prot 100.0 5.2E-40 1.1E-44 244.2 23.0 275 22-345 36-321 (338)
15 KOG0315 G-protein beta subunit 100.0 5.7E-39 1.2E-43 232.8 26.3 255 49-346 10-272 (311)
16 KOG0284 Polyadenylation factor 100.0 4.5E-41 9.7E-46 259.7 16.0 264 32-345 95-363 (464)
17 KOG0645 WD40 repeat protein [G 100.0 3.1E-38 6.6E-43 231.6 29.9 269 23-321 4-311 (312)
18 KOG0286 G-protein beta subunit 100.0 3.8E-39 8.2E-44 238.9 25.3 246 28-319 92-343 (343)
19 KOG1034 Transcriptional repres 100.0 2.7E-39 5.9E-44 243.4 23.7 326 19-345 23-366 (385)
20 KOG0284 Polyadenylation factor 100.0 1.2E-40 2.6E-45 257.3 14.5 249 23-321 128-380 (464)
21 KOG0273 Beta-transducin family 100.0 2.3E-38 4.9E-43 249.0 26.5 272 30-346 175-466 (524)
22 KOG0316 Conserved WD40 repeat- 100.0 5.8E-38 1.3E-42 225.9 24.8 267 24-343 8-281 (307)
23 KOG0281 Beta-TrCP (transducin 100.0 8.6E-40 1.9E-44 248.2 13.5 236 31-324 195-431 (499)
24 KOG0295 WD40 repeat-containing 100.0 2.7E-38 5.9E-43 240.9 21.5 250 21-320 138-405 (406)
25 KOG0281 Beta-TrCP (transducin 100.0 2.5E-39 5.3E-44 245.7 15.7 255 20-326 224-482 (499)
26 KOG0266 WD40 repeat-containing 100.0 4.4E-37 9.5E-42 261.4 29.5 277 20-345 145-435 (456)
27 KOG0318 WD40 repeat stress pro 100.0 1.2E-36 2.6E-41 242.5 29.7 297 3-343 162-584 (603)
28 KOG0263 Transcription initiati 100.0 4.7E-38 1E-42 261.9 22.6 207 25-271 443-652 (707)
29 PLN00181 protein SPA1-RELATED; 100.0 2.4E-36 5.3E-41 275.2 35.5 277 29-346 479-777 (793)
30 KOG0291 WD40-repeat-containing 100.0 1.4E-36 3.1E-41 251.8 28.7 277 20-346 294-596 (893)
31 cd00200 WD40 WD40 domain, foun 100.0 9.9E-36 2.2E-40 241.8 33.0 270 26-346 2-275 (289)
32 KOG0277 Peroxisomal targeting 100.0 3.9E-37 8.5E-42 223.9 21.4 265 36-343 11-289 (311)
33 KOG0292 Vesicle coat complex C 100.0 5.3E-37 1.1E-41 258.6 24.0 292 28-345 4-305 (1202)
34 KOG0277 Peroxisomal targeting 100.0 2.1E-37 4.5E-42 225.4 18.7 256 21-320 49-308 (311)
35 KOG0296 Angio-associated migra 100.0 2.3E-35 5E-40 225.1 28.6 270 24-321 55-398 (399)
36 KOG0310 Conserved WD40 repeat- 100.0 1.9E-36 4.1E-41 239.2 23.3 265 33-345 26-292 (487)
37 KOG0282 mRNA splicing factor [ 100.0 4.2E-37 9E-42 242.7 17.7 271 23-319 204-503 (503)
38 KOG0319 WD40-repeat-containing 100.0 2.6E-36 5.7E-41 249.6 22.3 249 28-322 360-620 (775)
39 KOG0291 WD40-repeat-containing 100.0 9E-35 1.9E-39 241.2 30.7 265 30-345 262-533 (893)
40 KOG0318 WD40 repeat stress pro 100.0 3.8E-34 8.2E-39 228.4 31.5 326 5-346 75-501 (603)
41 KOG0266 WD40 repeat-containing 100.0 8.3E-35 1.8E-39 247.5 28.8 247 24-321 194-454 (456)
42 KOG0299 U3 snoRNP-associated p 100.0 7.6E-35 1.6E-39 228.6 23.9 281 27-345 136-438 (479)
43 KOG0319 WD40-repeat-containing 100.0 8E-35 1.7E-39 240.9 23.9 279 20-345 310-602 (775)
44 KOG1446 Histone H3 (Lys4) meth 100.0 2.6E-33 5.6E-38 210.4 28.6 273 22-343 3-286 (311)
45 KOG0283 WD40 repeat-containing 100.0 1.9E-34 4.2E-39 242.3 25.2 261 23-323 256-578 (712)
46 KOG1407 WD40 repeat protein [F 100.0 4.5E-34 9.9E-39 208.8 23.5 269 27-345 14-285 (313)
47 KOG0285 Pleiotropic regulator 100.0 7.9E-34 1.7E-38 216.4 22.3 257 22-322 182-440 (460)
48 KOG0313 Microtubule binding pr 100.0 1.8E-33 3.8E-38 215.9 24.0 258 21-321 132-418 (423)
49 KOG0293 WD40 repeat-containing 100.0 1.7E-33 3.7E-38 218.4 24.1 276 22-345 213-495 (519)
50 KOG0288 WD40 repeat protein Ti 100.0 3.7E-35 8.1E-40 227.4 14.6 267 25-346 167-445 (459)
51 KOG0294 WD40 repeat-containing 100.0 6.1E-33 1.3E-37 208.1 24.9 268 20-339 30-304 (362)
52 KOG0293 WD40 repeat-containing 100.0 7.5E-34 1.6E-38 220.3 20.2 267 4-323 242-515 (519)
53 KOG0264 Nucleosome remodeling 100.0 9.2E-34 2E-38 222.3 20.8 256 31-322 122-405 (422)
54 KOG0274 Cdc4 and related F-box 100.0 3.8E-33 8.3E-38 236.7 25.5 249 23-328 239-489 (537)
55 KOG0276 Vesicle coat complex C 100.0 4.7E-33 1E-37 226.6 24.7 258 22-330 44-307 (794)
56 KOG0306 WD40-repeat-containing 100.0 9.2E-33 2E-37 229.2 26.3 269 28-346 368-648 (888)
57 KOG0313 Microtubule binding pr 100.0 9.1E-33 2E-37 212.0 23.6 264 31-343 103-400 (423)
58 KOG0265 U5 snRNP-specific prot 100.0 7E-33 1.5E-37 206.4 21.9 246 26-318 83-335 (338)
59 KOG0278 Serine/threonine kinas 100.0 3.8E-34 8.1E-39 208.1 14.2 247 25-326 51-302 (334)
60 cd00200 WD40 WD40 domain, foun 100.0 9.7E-32 2.1E-36 218.4 30.3 244 25-319 43-289 (289)
61 KOG0292 Vesicle coat complex C 100.0 6.4E-33 1.4E-37 234.2 23.6 252 23-324 41-324 (1202)
62 KOG0643 Translation initiation 100.0 2.5E-32 5.5E-37 200.4 23.5 254 28-323 5-319 (327)
63 PTZ00421 coronin; Provisional 100.0 1.5E-31 3.3E-36 226.7 31.4 266 34-343 21-314 (493)
64 KOG0274 Cdc4 and related F-box 100.0 8E-32 1.7E-36 228.7 26.4 250 32-340 207-462 (537)
65 KOG0310 Conserved WD40 repeat- 100.0 2.2E-32 4.8E-37 216.4 21.4 244 28-322 63-310 (487)
66 KOG0316 Conserved WD40 repeat- 100.0 1.4E-32 3.1E-37 198.2 18.0 206 82-329 16-221 (307)
67 PTZ00420 coronin; Provisional 100.0 1.6E-30 3.4E-35 221.6 33.5 239 60-344 56-318 (568)
68 KOG0772 Uncharacterized conser 100.0 7.5E-32 1.6E-36 214.9 22.7 282 23-343 157-468 (641)
69 PLN00181 protein SPA1-RELATED; 100.0 9.6E-31 2.1E-35 238.7 33.4 253 32-320 531-792 (793)
70 KOG0645 WD40 repeat protein [G 100.0 1.3E-30 2.7E-35 191.8 26.2 206 81-322 12-226 (312)
71 KOG0282 mRNA splicing factor [ 100.0 1.6E-32 3.4E-37 217.0 15.3 233 79-344 210-486 (503)
72 KOG0305 Anaphase promoting com 100.0 4.7E-31 1E-35 216.2 24.0 251 48-346 187-445 (484)
73 KOG0300 WD40 repeat-containing 100.0 2.4E-31 5.2E-36 200.3 20.3 273 21-343 136-455 (481)
74 KOG0275 Conserved WD40 repeat- 100.0 3.3E-32 7.1E-37 205.5 15.7 254 30-330 210-476 (508)
75 KOG0305 Anaphase promoting com 100.0 6.3E-31 1.4E-35 215.5 23.9 242 32-325 216-465 (484)
76 KOG0278 Serine/threonine kinas 100.0 4.9E-32 1.1E-36 197.1 14.0 266 29-345 10-280 (334)
77 PTZ00421 coronin; Provisional 100.0 1.4E-29 3.1E-34 214.8 30.4 249 28-323 70-333 (493)
78 KOG0647 mRNA export protein (c 100.0 4.4E-30 9.6E-35 191.8 23.5 274 30-346 24-307 (347)
79 KOG0268 Sof1-like rRNA process 100.0 1.6E-31 3.4E-36 204.2 14.3 251 24-324 57-348 (433)
80 KOG0643 Translation initiation 100.0 7.5E-30 1.6E-34 187.4 22.1 228 81-343 8-242 (327)
81 KOG0283 WD40 repeat-containing 100.0 8.4E-31 1.8E-35 220.6 19.5 231 81-346 265-560 (712)
82 KOG0289 mRNA splicing factor [ 100.0 9E-30 2E-34 198.9 23.7 253 20-320 248-505 (506)
83 PTZ00420 coronin; Provisional 100.0 6.2E-29 1.3E-33 211.9 30.9 235 24-301 65-318 (568)
84 KOG0301 Phospholipase A2-activ 100.0 4.4E-30 9.4E-35 211.6 22.7 267 21-345 2-272 (745)
85 KOG1539 WD repeat protein [Gen 100.0 3.5E-29 7.7E-34 210.3 28.4 288 21-346 190-631 (910)
86 KOG0264 Nucleosome remodeling 100.0 1.5E-30 3.3E-35 204.3 19.0 231 81-346 122-387 (422)
87 KOG1332 Vesicle coat complex C 100.0 2.3E-30 5E-35 187.7 17.8 257 30-322 8-287 (299)
88 KOG0641 WD40 repeat protein [G 100.0 5.8E-28 1.3E-32 173.7 29.3 278 19-343 19-330 (350)
89 KOG0306 WD40-repeat-containing 100.0 2.4E-29 5.1E-34 209.2 25.3 249 21-323 402-666 (888)
90 KOG0641 WD40 repeat protein [G 100.0 3E-28 6.5E-33 175.2 27.2 258 26-321 82-349 (350)
91 KOG1036 Mitotic spindle checkp 100.0 8.9E-29 1.9E-33 185.4 23.8 263 32-345 12-287 (323)
92 KOG0640 mRNA cleavage stimulat 100.0 1.7E-29 3.7E-34 189.6 20.0 259 26-320 105-425 (430)
93 KOG0973 Histone transcription 100.0 2.9E-29 6.3E-34 216.8 24.0 257 24-324 60-358 (942)
94 KOG0270 WD40 repeat-containing 100.0 2E-29 4.4E-34 197.5 20.6 255 37-327 177-455 (463)
95 KOG1407 WD40 repeat protein [F 100.0 1.7E-28 3.8E-33 179.7 23.8 253 4-312 38-293 (313)
96 KOG0973 Histone transcription 100.0 4.1E-29 8.8E-34 215.9 23.9 275 32-345 12-338 (942)
97 KOG0308 Conserved WD40 repeat- 100.0 4E-30 8.6E-35 210.4 15.9 251 31-323 19-287 (735)
98 KOG2096 WD40 repeat protein [G 100.0 1.9E-28 4.2E-33 184.6 22.8 286 26-346 79-387 (420)
99 KOG0275 Conserved WD40 repeat- 100.0 4.8E-30 1E-34 193.9 13.5 264 8-319 235-507 (508)
100 KOG0269 WD40 repeat-containing 100.0 3.1E-29 6.8E-34 209.0 17.9 250 35-324 41-299 (839)
101 KOG0296 Angio-associated migra 100.0 1.1E-27 2.4E-32 183.4 24.1 231 82-346 63-382 (399)
102 KOG0289 mRNA splicing factor [ 100.0 7.7E-28 1.7E-32 188.2 23.3 263 34-345 220-489 (506)
103 KOG2106 Uncharacterized conser 100.0 8.1E-27 1.8E-31 185.9 29.2 268 29-346 196-505 (626)
104 KOG0269 WD40 repeat-containing 100.0 3.2E-29 6.9E-34 209.0 15.1 248 35-324 89-343 (839)
105 KOG0299 U3 snoRNP-associated p 100.0 6.5E-28 1.4E-32 189.9 21.0 255 30-321 199-456 (479)
106 KOG0301 Phospholipase A2-activ 100.0 8.3E-28 1.8E-32 198.3 22.1 242 21-323 45-290 (745)
107 KOG0300 WD40 repeat-containing 100.0 8.3E-28 1.8E-32 181.3 19.7 259 22-323 179-478 (481)
108 KOG0640 mRNA cleavage stimulat 100.0 3.4E-28 7.5E-33 182.6 16.7 213 82-331 111-345 (430)
109 KOG0646 WD40 repeat protein [G 100.0 1.3E-27 2.8E-32 188.6 20.5 254 50-342 51-329 (476)
110 KOG2445 Nuclear pore complex c 100.0 1.9E-26 4.2E-31 172.9 24.8 284 30-341 10-341 (361)
111 KOG0288 WD40 repeat protein Ti 100.0 3.4E-28 7.4E-33 189.0 16.0 246 23-319 209-459 (459)
112 KOG0639 Transducin-like enhanc 100.0 6.5E-28 1.4E-32 192.2 17.5 269 30-346 416-688 (705)
113 KOG0302 Ribosome Assembly prot 100.0 1.7E-27 3.7E-32 183.2 18.4 213 82-323 150-380 (440)
114 KOG0267 Microtubule severing p 100.0 2.5E-29 5.4E-34 208.2 8.9 222 82-345 27-251 (825)
115 KOG4283 Transcription-coupled 100.0 5.7E-26 1.2E-30 169.6 25.4 226 30-272 40-280 (397)
116 KOG0302 Ribosome Assembly prot 100.0 4.1E-27 8.9E-32 181.1 19.7 263 27-318 145-435 (440)
117 KOG0646 WD40 repeat protein [G 100.0 7.1E-27 1.5E-31 184.4 21.0 256 33-322 81-351 (476)
118 KOG1332 Vesicle coat complex C 100.0 2.5E-27 5.4E-32 172.1 16.3 220 21-269 44-287 (299)
119 KOG1274 WD40 repeat protein [G 100.0 5E-26 1.1E-30 193.5 26.6 267 30-345 10-283 (933)
120 KOG0308 Conserved WD40 repeat- 100.0 2.4E-27 5.3E-32 194.3 17.0 264 9-322 48-328 (735)
121 KOG1446 Histone H3 (Lys4) meth 100.0 2.2E-25 4.8E-30 168.0 24.9 225 82-346 13-246 (311)
122 KOG0639 Transducin-like enhanc 100.0 5.1E-27 1.1E-31 187.2 17.0 237 32-320 464-703 (705)
123 KOG1445 Tumor-specific antigen 100.0 1.5E-26 3.2E-31 189.7 19.1 145 174-346 627-778 (1012)
124 KOG0267 Microtubule severing p 99.9 6.9E-28 1.5E-32 199.7 9.8 236 27-313 22-260 (825)
125 KOG0772 Uncharacterized conser 99.9 2.4E-26 5.1E-31 183.8 18.2 249 32-322 213-488 (641)
126 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.7E-24 5.9E-29 176.1 30.8 268 24-342 22-300 (300)
127 KOG0321 WD40 repeat-containing 99.9 8.8E-26 1.9E-30 184.8 21.0 277 37-343 53-371 (720)
128 KOG2048 WD40 repeat protein [G 99.9 4.9E-24 1.1E-28 175.8 28.9 254 30-324 22-278 (691)
129 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 6.2E-24 1.4E-28 174.0 29.9 247 50-346 2-262 (300)
130 KOG1036 Mitotic spindle checkp 99.9 2E-24 4.4E-29 162.1 23.5 241 30-311 51-294 (323)
131 KOG0321 WD40 repeat-containing 99.9 3.5E-25 7.6E-30 181.4 20.9 276 7-323 70-393 (720)
132 KOG2106 Uncharacterized conser 99.9 4.3E-24 9.4E-29 170.6 25.5 279 26-344 97-419 (626)
133 KOG0307 Vesicle coat complex C 99.9 2.3E-26 4.9E-31 200.1 13.6 253 33-324 64-330 (1049)
134 KOG0294 WD40 repeat-containing 99.9 5.2E-24 1.1E-28 160.5 24.0 228 52-327 4-243 (362)
135 KOG0270 WD40 repeat-containing 99.9 9.7E-25 2.1E-29 171.4 20.2 195 97-327 192-410 (463)
136 KOG0647 mRNA export protein (c 99.9 8.9E-24 1.9E-28 158.3 24.0 233 28-309 67-311 (347)
137 KOG1273 WD40 repeat protein [G 99.9 5.3E-24 1.1E-28 160.5 22.8 268 36-342 26-303 (405)
138 KOG0268 Sof1-like rRNA process 99.9 5.7E-26 1.2E-30 174.0 12.5 224 81-346 64-329 (433)
139 KOG4328 WD40 protein [Function 99.9 1.8E-24 3.8E-29 170.6 20.0 287 22-344 175-476 (498)
140 KOG2055 WD40 repeat protein [G 99.9 7.6E-24 1.6E-28 167.3 23.5 286 17-346 194-496 (514)
141 KOG4283 Transcription-coupled 99.9 2E-24 4.2E-29 161.4 19.2 260 30-326 98-370 (397)
142 KOG1063 RNA polymerase II elon 99.9 1.5E-23 3.2E-28 173.5 25.8 325 5-346 163-632 (764)
143 KOG0650 WD40 repeat nucleolar 99.9 1.9E-24 4.2E-29 175.9 19.7 256 22-318 389-732 (733)
144 KOG1007 WD repeat protein TSSC 99.9 2.6E-24 5.5E-29 160.3 18.5 262 27-322 57-362 (370)
145 KOG2919 Guanine nucleotide-bin 99.9 1.1E-23 2.3E-28 159.4 22.0 270 36-343 52-351 (406)
146 KOG2445 Nuclear pore complex c 99.9 3.1E-23 6.8E-28 155.8 24.2 261 1-271 28-321 (361)
147 KOG1408 WD40 repeat protein [F 99.9 2E-24 4.4E-29 179.5 19.1 251 32-323 458-715 (1080)
148 KOG1408 WD40 repeat protein [F 99.9 5.4E-24 1.2E-28 177.0 21.3 286 37-345 328-696 (1080)
149 KOG1034 Transcriptional repres 99.9 4.9E-24 1.1E-28 161.5 18.6 271 24-321 78-383 (385)
150 KOG4378 Nuclear protein COP1 [ 99.9 6.8E-24 1.5E-28 169.2 19.9 260 36-343 37-304 (673)
151 KOG1063 RNA polymerase II elon 99.9 7.2E-23 1.6E-27 169.5 25.8 276 28-342 262-674 (764)
152 KOG1007 WD repeat protein TSSC 99.9 5.8E-24 1.3E-28 158.4 17.5 239 21-268 110-361 (370)
153 KOG0307 Vesicle coat complex C 99.9 5E-25 1.1E-29 191.8 13.1 228 82-344 63-308 (1049)
154 KOG0290 Conserved WD40 repeat- 99.9 6.4E-23 1.4E-27 153.0 22.1 282 22-343 34-346 (364)
155 KOG2919 Guanine nucleotide-bin 99.9 1.4E-23 3.1E-28 158.8 18.1 238 33-312 104-361 (406)
156 KOG2055 WD40 repeat protein [G 99.9 2.3E-23 4.9E-28 164.6 19.4 252 26-321 250-512 (514)
157 KOG4328 WD40 protein [Function 99.9 2.7E-23 5.9E-28 164.0 17.2 232 82-345 185-433 (498)
158 KOG1273 WD40 repeat protein [G 99.9 3.7E-23 7.9E-28 156.0 15.8 223 88-346 26-263 (405)
159 KOG0644 Uncharacterized conser 99.9 2.5E-24 5.5E-29 181.6 9.6 268 21-345 178-451 (1113)
160 KOG4378 Nuclear protein COP1 [ 99.9 6.3E-23 1.4E-27 163.8 17.0 253 50-346 4-264 (673)
161 KOG0290 Conserved WD40 repeat- 99.9 3E-22 6.4E-27 149.5 18.3 257 30-317 93-361 (364)
162 KOG1274 WD40 repeat protein [G 99.9 1.2E-21 2.5E-26 167.3 23.2 228 82-346 12-246 (933)
163 KOG1587 Cytoplasmic dynein int 99.9 2.5E-21 5.5E-26 163.8 23.7 255 32-323 241-518 (555)
164 KOG2048 WD40 repeat protein [G 99.9 1.2E-20 2.5E-25 156.2 26.1 253 22-321 57-319 (691)
165 KOG1188 WD40 repeat protein [G 99.9 8.8E-22 1.9E-26 150.1 17.2 193 50-271 41-245 (376)
166 KOG1539 WD repeat protein [Gen 99.9 2.7E-21 5.9E-26 163.4 21.2 245 34-322 396-649 (910)
167 KOG0322 G-protein beta subunit 99.9 6E-22 1.3E-26 145.9 15.1 250 27-320 8-322 (323)
168 KOG1009 Chromatin assembly com 99.9 1.6E-20 3.5E-25 146.4 23.6 289 32-346 12-356 (434)
169 KOG2096 WD40 repeat protein [G 99.9 1.3E-20 2.8E-25 142.7 21.9 282 3-320 103-401 (420)
170 KOG4227 WD40 repeat protein [G 99.9 3.6E-21 7.8E-26 149.7 18.7 286 25-322 48-388 (609)
171 KOG0303 Actin-binding protein 99.9 1.1E-20 2.4E-25 146.9 20.0 207 81-326 79-299 (472)
172 KOG1538 Uncharacterized conser 99.9 1E-20 2.2E-25 156.7 18.7 257 35-346 14-277 (1081)
173 KOG0303 Actin-binding protein 99.9 1.8E-20 3.8E-25 145.7 18.5 212 28-271 76-297 (472)
174 KOG0642 Cell-cycle nuclear pro 99.9 3E-21 6.6E-26 156.4 14.7 267 21-326 282-566 (577)
175 KOG1524 WD40 repeat-containing 99.9 6.4E-21 1.4E-25 153.9 16.3 253 31-345 12-269 (737)
176 KOG0649 WD40 repeat protein [G 99.9 4.3E-19 9.4E-24 129.6 24.2 244 26-318 55-313 (325)
177 KOG2110 Uncharacterized conser 99.9 8.3E-19 1.8E-23 135.4 26.6 238 33-324 5-251 (391)
178 KOG1188 WD40 repeat protein [G 99.9 1.7E-20 3.8E-25 143.1 16.9 199 100-327 42-248 (376)
179 KOG0649 WD40 repeat protein [G 99.9 1.8E-19 3.8E-24 131.6 19.5 219 89-343 16-257 (325)
180 KOG1517 Guanine nucleotide bin 99.9 1.7E-19 3.6E-24 156.6 22.7 273 31-343 1062-1362(1387)
181 COG2319 FOG: WD40 repeat [Gene 99.9 4.6E-18 9.9E-23 146.4 31.8 265 28-340 60-336 (466)
182 KOG1310 WD40 repeat protein [G 99.9 1.3E-20 2.9E-25 152.5 14.6 178 20-206 37-232 (758)
183 KOG1009 Chromatin assembly com 99.9 4E-19 8.6E-24 138.7 21.3 260 22-325 54-376 (434)
184 KOG1538 Uncharacterized conser 99.9 9.3E-20 2E-24 151.1 18.4 248 21-323 41-295 (1081)
185 KOG1587 Cytoplasmic dynein int 99.8 9E-19 2E-23 148.5 23.3 252 60-345 224-499 (555)
186 KOG1334 WD40 repeat protein [G 99.8 2.9E-20 6.2E-25 148.4 12.3 284 21-324 130-469 (559)
187 KOG1272 WD40-repeat-containing 99.8 2E-20 4.4E-25 148.3 9.1 249 36-342 132-389 (545)
188 KOG0650 WD40 repeat nucleolar 99.8 9.7E-19 2.1E-23 143.1 18.9 249 79-346 396-719 (733)
189 KOG1517 Guanine nucleotide bin 99.8 3.8E-18 8.2E-23 148.4 23.4 256 33-324 1109-1384(1387)
190 COG2319 FOG: WD40 repeat [Gene 99.8 1.3E-16 2.7E-21 137.4 33.0 271 23-345 145-425 (466)
191 KOG1523 Actin-related protein 99.8 1.4E-17 2.9E-22 126.5 21.5 253 32-312 9-269 (361)
192 KOG1963 WD40 repeat protein [G 99.8 3.1E-17 6.7E-22 140.1 25.4 275 30-322 202-539 (792)
193 KOG2110 Uncharacterized conser 99.8 1.7E-17 3.6E-22 128.4 21.4 160 33-206 87-249 (391)
194 KOG1524 WD40 repeat-containing 99.8 2E-18 4.4E-23 139.7 16.4 208 50-320 76-285 (737)
195 KOG1445 Tumor-specific antigen 99.8 2.3E-18 5.1E-23 142.1 15.9 230 57-325 602-848 (1012)
196 KOG3881 Uncharacterized conser 99.8 2.6E-17 5.6E-22 128.2 20.2 272 31-343 53-342 (412)
197 KOG0771 Prolactin regulatory e 99.8 2.8E-18 6.1E-23 134.8 14.5 202 89-323 148-356 (398)
198 PRK11028 6-phosphogluconolacto 99.8 3.8E-16 8.1E-21 129.3 25.7 258 52-346 5-287 (330)
199 KOG2111 Uncharacterized conser 99.8 4.1E-16 8.9E-21 118.5 23.1 238 36-324 8-259 (346)
200 PRK11028 6-phosphogluconolacto 99.8 1.6E-15 3.4E-20 125.6 29.0 283 21-340 23-327 (330)
201 KOG0771 Prolactin regulatory e 99.8 1.6E-17 3.5E-22 130.5 15.7 182 132-346 148-338 (398)
202 KOG1240 Protein kinase contain 99.8 2.2E-16 4.7E-21 139.6 24.0 273 18-325 1033-1338(1431)
203 KOG1523 Actin-related protein 99.8 8.8E-17 1.9E-21 122.1 18.2 214 82-324 9-239 (361)
204 KOG1272 WD40-repeat-containing 99.8 1.3E-18 2.8E-23 138.3 8.3 240 34-324 171-412 (545)
205 KOG1963 WD40 repeat protein [G 99.8 4.1E-16 9E-21 133.4 21.6 269 39-346 22-306 (792)
206 KOG4227 WD40 repeat protein [G 99.7 3.9E-16 8.5E-21 122.0 18.0 165 81-271 54-228 (609)
207 KOG0642 Cell-cycle nuclear pro 99.7 1.1E-16 2.4E-21 130.3 14.9 227 12-271 320-564 (577)
208 KOG2394 WD40 protein DMR-N9 [G 99.7 4.3E-16 9.3E-21 126.3 17.7 169 51-250 187-384 (636)
209 KOG0322 G-protein beta subunit 99.7 3.5E-16 7.5E-21 115.9 14.8 238 82-345 13-306 (323)
210 KOG1310 WD40 repeat protein [G 99.7 4.4E-17 9.5E-22 132.4 10.6 184 120-320 42-230 (758)
211 KOG4497 Uncharacterized conser 99.7 5.2E-16 1.1E-20 118.6 15.3 284 39-344 14-373 (447)
212 PRK01742 tolB translocation pr 99.7 1.8E-15 3.9E-20 129.0 20.6 227 60-343 186-426 (429)
213 PF02239 Cytochrom_D1: Cytochr 99.7 2E-14 4.3E-19 118.9 25.0 284 22-346 25-329 (369)
214 KOG0644 Uncharacterized conser 99.7 5.1E-17 1.1E-21 138.2 9.1 198 82-327 189-389 (1113)
215 KOG1409 Uncharacterized conser 99.7 2.2E-15 4.9E-20 115.7 16.3 213 21-271 12-273 (404)
216 KOG2139 WD40 repeat protein [G 99.7 3.6E-14 7.7E-19 110.0 21.0 248 33-325 98-387 (445)
217 PRK01742 tolB translocation pr 99.7 6.1E-15 1.3E-19 125.8 18.6 219 27-300 197-426 (429)
218 KOG0280 Uncharacterized conser 99.7 3.2E-14 6.9E-19 107.2 19.0 259 33-325 69-337 (339)
219 PRK03629 tolB translocation pr 99.7 9.2E-14 2E-18 118.4 24.5 231 60-343 181-428 (429)
220 KOG2111 Uncharacterized conser 99.7 2.1E-13 4.6E-18 104.0 23.4 169 23-207 85-258 (346)
221 KOG1354 Serine/threonine prote 99.7 1.2E-14 2.6E-19 111.9 16.7 267 33-324 25-362 (433)
222 KOG2139 WD40 repeat protein [G 99.7 3.3E-13 7.1E-18 104.8 24.2 269 32-321 139-431 (445)
223 KOG2321 WD40 repeat protein [G 99.7 4.7E-14 1E-18 115.7 20.6 269 31-345 49-326 (703)
224 KOG3881 Uncharacterized conser 99.7 5.6E-14 1.2E-18 109.9 20.1 202 30-271 102-323 (412)
225 KOG1240 Protein kinase contain 99.7 1.4E-13 2.9E-18 122.4 24.8 285 22-319 1087-1431(1431)
226 KOG2394 WD40 protein DMR-N9 [G 99.6 1.7E-14 3.7E-19 117.3 16.1 240 48-326 134-457 (636)
227 PRK04922 tolB translocation pr 99.6 1.5E-13 3.2E-18 117.6 21.9 230 60-342 186-432 (433)
228 KOG0974 WD-repeat protein WDR6 99.6 7.6E-14 1.6E-18 121.9 19.2 188 96-323 98-290 (967)
229 PRK05137 tolB translocation pr 99.6 5.3E-13 1.1E-17 114.4 24.4 230 60-343 184-433 (435)
230 KOG1334 WD40 repeat protein [G 99.6 1.9E-14 4.2E-19 115.6 12.0 167 81-270 140-314 (559)
231 PRK02889 tolB translocation pr 99.6 1E-12 2.2E-17 112.1 23.3 232 60-343 178-425 (427)
232 KOG4547 WD40 repeat-containing 99.6 2.4E-12 5.1E-17 106.2 24.2 190 48-269 4-221 (541)
233 PRK05137 tolB translocation pr 99.6 6.5E-13 1.4E-17 113.8 21.6 195 108-346 182-390 (435)
234 PF02239 Cytochrom_D1: Cytochr 99.6 6.6E-12 1.4E-16 104.0 26.0 260 49-346 5-282 (369)
235 PRK03629 tolB translocation pr 99.6 1.3E-12 2.9E-17 111.3 22.3 216 29-299 194-427 (429)
236 PF08662 eIF2A: Eukaryotic tra 99.6 1E-12 2.2E-17 98.9 19.1 148 38-206 10-180 (194)
237 PRK02889 tolB translocation pr 99.6 3.6E-13 7.8E-18 114.9 18.7 197 108-346 176-384 (427)
238 KOG0280 Uncharacterized conser 99.6 2.2E-12 4.7E-17 97.5 20.1 230 59-325 47-288 (339)
239 KOG0974 WD-repeat protein WDR6 99.6 2.8E-13 6E-18 118.5 16.8 187 50-271 100-291 (967)
240 KOG4497 Uncharacterized conser 99.5 8.4E-12 1.8E-16 96.0 21.2 283 34-345 49-415 (447)
241 PRK04922 tolB translocation pr 99.5 3E-12 6.4E-17 109.7 21.3 218 28-299 198-432 (433)
242 PF08662 eIF2A: Eukaryotic tra 99.5 5.1E-12 1.1E-16 95.1 20.0 149 89-270 9-181 (194)
243 KOG2321 WD40 repeat protein [G 99.5 3.3E-12 7.2E-17 105.1 20.0 224 84-343 52-282 (703)
244 TIGR02800 propeller_TolB tol-p 99.5 1.7E-11 3.8E-16 105.1 23.9 210 60-322 172-398 (417)
245 PF10282 Lactonase: Lactonase, 99.5 3.4E-09 7.4E-14 88.0 36.0 287 20-340 24-345 (345)
246 KOG4547 WD40 repeat-containing 99.5 1.9E-11 4E-16 101.0 20.3 186 100-322 7-221 (541)
247 TIGR02800 propeller_TolB tol-p 99.5 1.9E-11 4.2E-16 104.8 20.9 195 108-346 170-378 (417)
248 KOG1064 RAVE (regulator of V-A 99.5 1.1E-12 2.3E-17 120.9 13.4 193 30-271 2205-2401(2439)
249 PRK04792 tolB translocation pr 99.4 1.3E-10 2.9E-15 99.6 24.3 214 83-343 217-447 (448)
250 PRK01029 tolB translocation pr 99.4 1.5E-10 3.2E-15 98.5 24.1 218 87-344 188-426 (428)
251 KOG2315 Predicted translation 99.4 3.4E-10 7.3E-15 93.2 24.7 277 34-346 35-368 (566)
252 KOG0309 Conserved WD40 repeat- 99.4 1.5E-12 3.3E-17 110.2 11.2 257 33-323 24-341 (1081)
253 KOG1354 Serine/threonine prote 99.4 1.5E-11 3.3E-16 95.1 15.4 226 84-332 26-313 (433)
254 PF15492 Nbas_N: Neuroblastoma 99.4 7.6E-10 1.7E-14 84.1 24.2 237 48-343 8-281 (282)
255 KOG2315 Predicted translation 99.4 1.1E-10 2.4E-15 96.0 20.5 250 37-342 129-410 (566)
256 PF10282 Lactonase: Lactonase, 99.4 9.4E-09 2E-13 85.4 32.1 255 59-346 14-305 (345)
257 TIGR02658 TTQ_MADH_Hv methylam 99.4 4E-09 8.6E-14 85.7 28.7 269 23-329 37-338 (352)
258 KOG4532 WD40-like repeat conta 99.4 3.8E-10 8.1E-15 84.6 20.8 202 100-331 86-292 (344)
259 KOG4714 Nucleoporin [Nuclear s 99.4 8.1E-12 1.8E-16 92.9 11.9 225 28-266 84-316 (319)
260 PRK00178 tolB translocation pr 99.4 2.6E-10 5.6E-15 98.1 23.0 231 60-343 181-428 (430)
261 COG5170 CDC55 Serine/threonine 99.4 2.5E-11 5.4E-16 92.8 14.1 266 32-322 25-368 (460)
262 KOG1912 WD40 repeat protein [G 99.4 2.2E-10 4.8E-15 98.0 20.5 132 20-156 42-183 (1062)
263 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.3E-08 2.7E-13 82.9 29.5 252 58-345 27-311 (352)
264 KOG3914 WD repeat protein WDR4 99.3 3.7E-11 8E-16 94.8 13.7 150 48-209 73-227 (390)
265 KOG1912 WD40 repeat protein [G 99.3 2.2E-10 4.8E-15 98.0 18.5 264 35-322 17-305 (1062)
266 PLN02919 haloacid dehalogenase 99.3 1.7E-08 3.7E-13 94.8 32.1 273 37-325 571-892 (1057)
267 PRK00178 tolB translocation pr 99.3 1.2E-09 2.6E-14 94.0 22.7 159 28-206 193-364 (430)
268 KOG1409 Uncharacterized conser 99.3 2.9E-10 6.3E-15 88.1 16.0 165 22-206 103-271 (404)
269 KOG1064 RAVE (regulator of V-A 99.3 2.3E-11 5E-16 112.5 11.3 185 91-327 2214-2404(2439)
270 COG5354 Uncharacterized protei 99.3 1.5E-09 3.3E-14 88.5 20.3 263 30-346 29-329 (561)
271 KOG2314 Translation initiation 99.3 3E-09 6.5E-14 87.8 22.2 263 36-346 252-551 (698)
272 KOG3914 WD repeat protein WDR4 99.3 1.3E-10 2.8E-15 91.9 13.3 151 93-273 70-228 (390)
273 PRK04792 tolB translocation pr 99.3 1.7E-09 3.7E-14 92.9 21.1 158 30-206 214-383 (448)
274 PRK01029 tolB translocation pr 99.2 8.1E-09 1.8E-13 88.0 23.2 201 29-271 180-406 (428)
275 KOG2314 Translation initiation 99.2 6E-09 1.3E-13 86.1 20.2 257 37-346 214-506 (698)
276 KOG2695 WD40 repeat protein [G 99.2 4.7E-11 1E-15 92.5 7.7 154 89-271 217-379 (425)
277 COG4946 Uncharacterized protei 99.2 6.3E-09 1.4E-13 84.4 19.2 208 95-346 276-502 (668)
278 COG2706 3-carboxymuconate cycl 99.2 7.5E-07 1.6E-11 70.3 29.6 281 30-341 36-345 (346)
279 KOG4190 Uncharacterized conser 99.2 1.5E-10 3.3E-15 95.4 9.6 174 25-208 727-909 (1034)
280 KOG4532 WD40-like repeat conta 99.2 1.1E-08 2.4E-13 76.9 18.1 253 38-323 72-333 (344)
281 KOG2041 WD40 repeat protein [G 99.2 8E-10 1.7E-14 93.9 13.5 231 83-345 14-271 (1189)
282 COG4946 Uncharacterized protei 99.2 1.1E-07 2.4E-12 77.5 24.4 143 30-191 356-504 (668)
283 TIGR03300 assembly_YfgL outer 99.1 6.8E-08 1.5E-12 81.7 24.6 233 50-333 106-350 (377)
284 KOG2041 WD40 repeat protein [G 99.1 8.9E-09 1.9E-13 87.8 18.6 272 33-343 14-319 (1189)
285 PF13360 PQQ_2: PQQ-like domai 99.1 4.9E-08 1.1E-12 77.1 21.1 229 60-326 5-235 (238)
286 KOG4714 Nucleoporin [Nuclear s 99.1 2.7E-09 5.8E-14 79.8 12.2 143 100-269 103-255 (319)
287 KOG2695 WD40 repeat protein [G 99.1 2.2E-10 4.8E-15 88.9 6.4 158 145-333 228-388 (425)
288 KOG0309 Conserved WD40 repeat- 99.1 1.3E-09 2.8E-14 92.9 10.6 201 85-324 26-235 (1081)
289 COG5170 CDC55 Serine/threonine 99.1 7.7E-09 1.7E-13 79.5 13.7 219 83-329 26-318 (460)
290 KOG4190 Uncharacterized conser 99.1 2.1E-09 4.6E-14 88.9 11.5 268 7-317 756-1032(1034)
291 TIGR03300 assembly_YfgL outer 99.1 1.4E-07 3.1E-12 79.8 23.1 218 51-318 147-376 (377)
292 COG2706 3-carboxymuconate cycl 99.1 9.5E-07 2.1E-11 69.7 25.4 255 57-346 15-304 (346)
293 COG5354 Uncharacterized protei 99.0 2.3E-07 4.9E-12 76.2 22.0 258 34-346 72-373 (561)
294 PF08450 SGL: SMP-30/Gluconola 99.0 4.1E-06 8.9E-11 66.4 29.9 221 38-308 4-243 (246)
295 KOG0882 Cyclophilin-related pe 99.0 2.9E-09 6.3E-14 85.7 10.7 218 82-329 8-239 (558)
296 PF04762 IKI3: IKI3 family; I 99.0 1.7E-06 3.7E-11 80.2 29.9 220 89-323 215-458 (928)
297 PF04762 IKI3: IKI3 family; I 99.0 2.1E-06 4.6E-11 79.7 29.6 269 34-345 22-361 (928)
298 PLN02919 haloacid dehalogenase 99.0 9.6E-07 2.1E-11 83.4 26.1 216 36-271 626-891 (1057)
299 KOG1275 PAB-dependent poly(A) 99.0 2.9E-08 6.4E-13 86.9 14.7 175 57-267 156-341 (1118)
300 KOG1275 PAB-dependent poly(A) 99.0 2.7E-08 5.8E-13 87.1 14.4 180 100-319 149-340 (1118)
301 PF00400 WD40: WD domain, G-be 99.0 3.4E-09 7.3E-14 57.2 5.9 39 118-157 1-39 (39)
302 KOG2066 Vacuolar assembly/sort 98.9 1.1E-07 2.5E-12 82.2 17.4 182 97-322 49-234 (846)
303 PF08450 SGL: SMP-30/Gluconola 98.9 1E-05 2.2E-10 64.1 27.3 217 89-344 5-237 (246)
304 KOG1645 RING-finger-containing 98.9 1.1E-07 2.4E-12 75.7 15.2 259 21-321 181-461 (463)
305 KOG1008 Uncharacterized conser 98.9 1.1E-09 2.3E-14 92.0 3.5 203 84-322 57-276 (783)
306 PF07433 DUF1513: Protein of u 98.9 6.5E-06 1.4E-10 65.1 23.9 235 38-316 9-280 (305)
307 PF00400 WD40: WD domain, G-be 98.9 1.6E-08 3.6E-13 54.4 6.3 39 161-203 1-39 (39)
308 PRK04043 tolB translocation pr 98.8 2.2E-06 4.8E-11 72.8 21.1 193 108-346 169-381 (419)
309 KOG0882 Cyclophilin-related pe 98.8 4.2E-07 9.2E-12 73.6 14.8 274 31-329 7-313 (558)
310 PRK11138 outer membrane biogen 98.8 5.3E-06 1.1E-10 70.7 22.5 231 51-331 122-363 (394)
311 PRK04043 tolB translocation pr 98.8 1E-05 2.3E-10 68.8 23.7 190 90-324 192-403 (419)
312 PF13360 PQQ_2: PQQ-like domai 98.7 9.1E-06 2E-10 64.1 21.4 183 49-271 37-233 (238)
313 KOG2066 Vacuolar assembly/sort 98.7 1.2E-06 2.6E-11 76.2 16.7 187 33-268 39-233 (846)
314 KOG1645 RING-finger-containing 98.7 6.6E-07 1.4E-11 71.5 14.0 96 110-209 175-270 (463)
315 KOG1832 HIV-1 Vpr-binding prot 98.7 1.3E-08 2.8E-13 88.9 4.6 165 21-207 1089-1257(1516)
316 PF15492 Nbas_N: Neuroblastoma 98.7 1.7E-05 3.7E-10 61.0 20.0 166 36-208 46-262 (282)
317 PF06977 SdiA-regulated: SdiA- 98.7 8.5E-06 1.8E-10 63.4 18.9 207 122-346 15-235 (248)
318 PRK11138 outer membrane biogen 98.7 1.2E-05 2.6E-10 68.5 21.7 223 51-320 162-393 (394)
319 KOG2114 Vacuolar assembly/sort 98.7 1.2E-05 2.5E-10 70.8 21.4 202 95-330 33-252 (933)
320 PF11768 DUF3312: Protein of u 98.7 2E-05 4.3E-10 66.7 21.3 88 111-206 239-330 (545)
321 KOG1920 IkappaB kinase complex 98.6 6E-05 1.3E-09 69.1 24.5 206 83-326 68-327 (1265)
322 PF04053 Coatomer_WDAD: Coatom 98.6 5.8E-05 1.3E-09 64.2 22.8 232 32-321 31-262 (443)
323 PF06433 Me-amine-dh_H: Methyl 98.5 6.1E-05 1.3E-09 60.4 20.2 264 39-334 41-333 (342)
324 cd00216 PQQ_DH Dehydrogenases 98.5 0.00038 8.3E-09 61.0 25.7 268 50-335 111-438 (488)
325 PF07433 DUF1513: Protein of u 98.4 0.00051 1.1E-08 54.6 23.3 219 92-332 11-258 (305)
326 KOG3617 WD40 and TPR repeat-co 98.4 1.6E-05 3.5E-10 70.0 15.1 107 38-159 20-131 (1416)
327 PF14783 BBS2_Mid: Ciliary BBS 98.4 8.5E-05 1.9E-09 49.1 15.1 104 86-200 2-109 (111)
328 KOG1832 HIV-1 Vpr-binding prot 98.4 2.4E-07 5.1E-12 81.4 4.1 159 119-324 1092-1258(1516)
329 KOG3621 WD40 repeat-containing 98.4 9.6E-05 2.1E-09 63.9 19.0 105 48-160 44-155 (726)
330 KOG2114 Vacuolar assembly/sort 98.4 8.7E-05 1.9E-09 65.6 19.1 186 48-271 34-246 (933)
331 KOG1920 IkappaB kinase complex 98.4 0.00014 2.9E-09 66.9 20.8 198 34-270 69-324 (1265)
332 PF11768 DUF3312: Protein of u 98.4 0.0002 4.4E-09 60.9 20.1 115 130-270 207-331 (545)
333 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00035 7.5E-09 58.6 21.5 78 59-147 24-118 (353)
334 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.00064 1.4E-08 51.9 19.7 104 95-206 20-124 (354)
335 PF08596 Lgl_C: Lethal giant l 98.3 0.0015 3.2E-08 55.1 26.0 227 86-345 4-319 (395)
336 PF03178 CPSF_A: CPSF A subuni 98.3 0.0014 3.1E-08 54.2 24.8 225 60-318 4-262 (321)
337 PF06977 SdiA-regulated: SdiA- 98.3 0.001 2.2E-08 52.0 21.4 215 83-318 21-247 (248)
338 KOG1008 Uncharacterized conser 98.2 2.6E-07 5.6E-12 78.2 0.6 171 26-206 95-276 (783)
339 KOG3621 WD40 repeat-containing 98.2 0.00012 2.7E-09 63.2 15.9 162 84-270 34-199 (726)
340 PF00780 CNH: CNH domain; Int 98.2 0.0021 4.6E-08 51.9 26.3 240 48-333 6-267 (275)
341 PF03178 CPSF_A: CPSF A subuni 98.2 0.0014 3.1E-08 54.2 21.1 181 108-322 2-203 (321)
342 PF14583 Pectate_lyase22: Olig 98.1 0.0029 6.4E-08 52.1 21.4 147 48-206 46-223 (386)
343 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.0021 4.6E-08 49.2 22.8 137 49-201 23-161 (354)
344 PF14783 BBS2_Mid: Ciliary BBS 98.1 0.00061 1.3E-08 45.1 13.7 104 36-154 2-109 (111)
345 PRK02888 nitrous-oxide reducta 98.1 0.0014 3.1E-08 57.3 19.8 255 51-345 68-387 (635)
346 PF14655 RAB3GAP2_N: Rab3 GTPa 98.0 0.0068 1.5E-07 51.1 28.5 95 38-138 6-118 (415)
347 KOG3617 WD40 and TPR repeat-co 98.0 0.00049 1.1E-08 61.2 15.1 69 36-116 62-131 (1416)
348 KOG4640 Anaphase-promoting com 97.9 7.5E-05 1.6E-09 63.7 9.0 93 85-184 22-115 (665)
349 PF08553 VID27: VID27 cytoplas 97.9 0.0014 3E-08 59.5 16.5 142 100-267 495-646 (794)
350 PF04841 Vps16_N: Vps16, N-ter 97.9 0.013 2.9E-07 50.1 22.1 198 109-341 62-268 (410)
351 smart00320 WD40 WD40 repeats. 97.9 5E-05 1.1E-09 40.0 5.0 38 119-157 3-40 (40)
352 cd00216 PQQ_DH Dehydrogenases 97.9 0.0076 1.6E-07 53.0 20.9 205 49-272 62-323 (488)
353 PRK02888 nitrous-oxide reducta 97.9 0.0066 1.4E-07 53.3 19.7 156 95-269 202-405 (635)
354 smart00320 WD40 WD40 repeats. 97.7 0.00013 2.8E-09 38.4 5.4 38 162-203 3-40 (40)
355 KOG2444 WD40 repeat protein [G 97.7 3.9E-05 8.4E-10 57.2 3.9 141 143-322 32-178 (238)
356 PF08553 VID27: VID27 cytoplas 97.7 0.0049 1.1E-07 56.1 17.6 148 140-320 492-646 (794)
357 COG3490 Uncharacterized protei 97.7 0.013 2.9E-07 45.7 17.2 247 38-321 72-348 (366)
358 KOG4640 Anaphase-promoting com 97.7 0.00018 3.8E-09 61.5 7.6 91 240-342 20-115 (665)
359 PF00780 CNH: CNH domain; Int 97.7 0.019 4.1E-07 46.4 22.3 152 96-272 6-169 (275)
360 PHA02713 hypothetical protein; 97.7 0.011 2.3E-07 52.9 19.0 192 95-326 302-538 (557)
361 COG0823 TolB Periplasmic compo 97.7 0.0029 6.3E-08 54.0 14.7 194 109-345 174-382 (425)
362 PF04053 Coatomer_WDAD: Coatom 97.7 0.0046 9.9E-08 53.0 15.7 144 127-323 31-175 (443)
363 KOG4441 Proteins containing BT 97.6 0.017 3.7E-07 51.6 19.3 231 48-325 284-550 (571)
364 COG3391 Uncharacterized conser 97.5 0.046 1E-06 46.4 25.1 219 93-346 38-266 (381)
365 PF08596 Lgl_C: Lethal giant l 97.5 0.0041 8.9E-08 52.5 13.2 141 176-321 3-173 (395)
366 KOG2395 Protein involved in va 97.5 0.01 2.2E-07 50.3 14.9 139 100-268 348-500 (644)
367 PF00930 DPPIV_N: Dipeptidyl p 97.4 0.026 5.6E-07 47.5 17.2 184 107-329 22-226 (353)
368 PF02897 Peptidase_S9_N: Proly 97.4 0.07 1.5E-06 46.1 27.3 243 37-327 127-410 (414)
369 KOG2079 Vacuolar assembly/sort 97.4 0.0012 2.5E-08 60.4 9.2 103 100-206 101-204 (1206)
370 PHA02713 hypothetical protein; 97.4 0.031 6.7E-07 50.0 18.1 188 48-271 303-536 (557)
371 COG3391 Uncharacterized conser 97.4 0.069 1.5E-06 45.4 22.4 201 92-328 80-290 (381)
372 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.3 0.1 2.2E-06 46.4 26.7 152 50-209 122-337 (527)
373 COG0823 TolB Periplasmic compo 97.2 0.074 1.6E-06 45.6 18.0 114 86-206 195-313 (425)
374 PF04841 Vps16_N: Vps16, N-ter 97.2 0.11 2.4E-06 44.6 24.6 32 174-206 216-247 (410)
375 PF05694 SBP56: 56kDa selenium 97.2 0.1 2.2E-06 44.0 20.4 257 48-310 86-393 (461)
376 PF05096 Glu_cyclase_2: Glutam 97.2 0.067 1.5E-06 42.0 23.1 201 82-310 41-250 (264)
377 COG3386 Gluconolactonase [Carb 97.2 0.086 1.9E-06 43.0 17.6 169 50-250 78-264 (307)
378 PHA03098 kelch-like protein; P 97.2 0.052 1.1E-06 48.6 17.7 104 95-206 293-415 (534)
379 KOG2444 WD40 repeat protein [G 97.2 0.0024 5.1E-08 48.0 7.2 103 100-206 72-178 (238)
380 KOG2395 Protein involved in va 97.1 0.018 3.9E-07 48.9 12.3 142 143-321 348-500 (644)
381 PF12894 Apc4_WD40: Anaphase-p 97.0 0.0025 5.5E-08 35.2 4.9 35 128-164 11-45 (47)
382 PF14583 Pectate_lyase22: Olig 97.0 0.16 3.6E-06 42.2 18.5 218 93-346 43-296 (386)
383 COG3204 Uncharacterized protei 97.0 0.13 2.8E-06 40.7 16.0 167 29-206 81-264 (316)
384 KOG4441 Proteins containing BT 96.9 0.098 2.1E-06 46.9 16.3 189 100-327 287-505 (571)
385 PF12894 Apc4_WD40: Anaphase-p 96.9 0.0037 8E-08 34.5 4.7 32 290-324 12-43 (47)
386 PRK13616 lipoprotein LpqB; Pro 96.8 0.3 6.6E-06 44.0 18.4 150 34-205 350-525 (591)
387 COG3386 Gluconolactonase [Carb 96.8 0.22 4.9E-06 40.6 24.6 219 50-311 38-276 (307)
388 KOG2079 Vacuolar assembly/sort 96.8 0.0082 1.8E-07 55.2 8.5 100 140-267 98-202 (1206)
389 PF05694 SBP56: 56kDa selenium 96.8 0.27 5.9E-06 41.5 20.6 198 100-323 89-344 (461)
390 KOG4499 Ca2+-binding protein R 96.6 0.21 4.6E-06 38.1 16.3 96 244-341 161-262 (310)
391 PHA02790 Kelch-like protein; P 96.6 0.47 1E-05 41.9 18.2 100 100-206 274-385 (480)
392 PF06433 Me-amine-dh_H: Methyl 96.5 0.33 7.2E-06 39.7 24.1 247 59-344 18-300 (342)
393 PF10313 DUF2415: Uncharacteri 96.3 0.018 4E-07 30.8 4.8 32 175-206 1-34 (43)
394 KOG1897 Damage-specific DNA bi 96.3 0.92 2E-05 42.3 23.4 177 64-269 753-943 (1096)
395 PF08728 CRT10: CRT10; InterP 96.3 0.46 1E-05 43.1 16.2 154 49-205 49-246 (717)
396 KOG1916 Nuclear protein, conta 96.3 0.0011 2.5E-08 59.4 0.4 215 29-269 128-375 (1283)
397 KOG4499 Ca2+-binding protein R 96.3 0.36 7.8E-06 36.9 16.7 99 129-251 158-264 (310)
398 PF12234 Rav1p_C: RAVE protein 96.2 0.69 1.5E-05 41.6 16.7 108 95-206 39-157 (631)
399 PF12234 Rav1p_C: RAVE protein 96.2 0.34 7.4E-06 43.4 14.8 128 20-159 16-156 (631)
400 PHA03098 kelch-like protein; P 96.2 0.77 1.7E-05 41.3 17.4 103 96-206 342-465 (534)
401 COG3204 Uncharacterized protei 96.1 0.51 1.1E-05 37.5 18.4 168 85-270 87-265 (316)
402 PF10313 DUF2415: Uncharacteri 96.0 0.041 8.8E-07 29.5 5.2 32 129-160 1-34 (43)
403 KOG3630 Nuclear pore complex, 96.0 0.13 2.9E-06 48.2 11.5 115 86-206 101-229 (1405)
404 KOG2247 WD40 repeat-containing 96.0 0.0015 3.3E-08 54.6 -0.3 144 88-261 37-181 (615)
405 PHA02790 Kelch-like protein; P 96.0 1 2.2E-05 39.8 17.1 101 95-206 317-424 (480)
406 KOG1983 Tomosyn and related SN 95.9 0.42 9E-06 45.9 14.9 209 89-325 39-268 (993)
407 TIGR03074 PQQ_membr_DH membran 95.9 1.6 3.4E-05 40.8 22.2 118 50-169 195-354 (764)
408 PRK13616 lipoprotein LpqB; Pro 95.8 1.4 3E-05 39.9 18.7 102 85-201 351-472 (591)
409 PF14655 RAB3GAP2_N: Rab3 GTPa 95.8 0.14 3.1E-06 43.4 10.3 94 21-125 295-407 (415)
410 PF14870 PSII_BNR: Photosynthe 95.6 1 2.2E-05 36.7 19.3 153 31-202 142-301 (302)
411 PF05096 Glu_cyclase_2: Glutam 95.5 0.92 2E-05 35.8 24.5 168 21-206 31-204 (264)
412 PF02897 Peptidase_S9_N: Proly 95.4 1.6 3.4E-05 37.8 30.4 112 90-206 128-261 (414)
413 PF07569 Hira: TUP1-like enhan 95.2 0.19 4E-06 38.9 8.5 80 242-324 14-98 (219)
414 COG3823 Glutamine cyclotransfe 95.2 0.98 2.1E-05 34.0 14.6 106 96-209 55-162 (262)
415 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.2 2.2 4.8E-05 38.1 21.5 114 49-169 70-199 (527)
416 PF15390 DUF4613: Domain of un 95.2 0.93 2E-05 39.8 12.9 119 82-206 55-187 (671)
417 KOG3630 Nuclear pore complex, 95.1 0.19 4.1E-06 47.2 9.2 147 35-192 102-260 (1405)
418 PF02333 Phytase: Phytase; In 95.1 1.8 3.9E-05 36.4 23.8 158 37-206 57-238 (381)
419 TIGR02604 Piru_Ver_Nterm putat 95.1 1.1 2.5E-05 37.9 13.5 55 290-346 124-197 (367)
420 KOG2247 WD40 repeat-containing 95.0 0.0029 6.3E-08 53.0 -2.1 140 37-197 38-180 (615)
421 PF14781 BBS2_N: Ciliary BBSom 94.9 0.8 1.7E-05 31.8 11.7 109 133-271 3-128 (136)
422 TIGR02276 beta_rpt_yvtn 40-res 94.9 0.088 1.9E-06 28.2 4.4 42 299-341 1-42 (42)
423 COG4590 ABC-type uncharacteriz 94.7 0.11 2.4E-06 43.7 6.2 229 89-346 118-371 (733)
424 PRK13684 Ycf48-like protein; P 94.7 2.2 4.7E-05 35.7 17.4 154 33-204 172-330 (334)
425 PF15390 DUF4613: Domain of un 94.6 1.3 2.8E-05 39.0 12.5 125 31-159 54-186 (671)
426 PF10647 Gmad1: Lipoprotein Lp 94.5 2 4.2E-05 34.3 14.8 148 35-197 25-187 (253)
427 PF14761 HPS3_N: Hermansky-Pud 94.4 1.7 3.6E-05 33.1 14.3 122 142-271 29-166 (215)
428 PF14870 PSII_BNR: Photosynthe 94.4 2.3 5.1E-05 34.7 27.2 235 36-318 64-301 (302)
429 PF08728 CRT10: CRT10; InterP 94.2 3.3 7.1E-05 38.0 14.5 125 186-320 113-245 (717)
430 PF07995 GSDH: Glucose / Sorbo 93.9 3.4 7.3E-05 34.5 24.8 264 35-316 3-330 (331)
431 COG3823 Glutamine cyclotransfe 93.8 2.2 4.8E-05 32.3 13.3 103 48-161 55-160 (262)
432 PF11635 Med16: Mediator compl 93.6 6.6 0.00014 37.0 21.7 75 240-316 259-345 (753)
433 COG5167 VID27 Protein involved 93.5 4.6 0.0001 35.1 13.6 143 140-322 478-633 (776)
434 TIGR03118 PEPCTERM_chp_1 conse 93.2 3.8 8.2E-05 33.1 20.7 217 92-327 29-285 (336)
435 KOG1916 Nuclear protein, conta 93.1 0.024 5.3E-07 51.4 -0.2 95 107-206 152-266 (1283)
436 PF07569 Hira: TUP1-like enhan 93.1 1.1 2.4E-05 34.7 8.9 65 140-206 21-96 (219)
437 KOG1900 Nuclear pore complex, 93.1 1.4 3.1E-05 42.5 10.7 158 105-270 96-274 (1311)
438 COG4590 ABC-type uncharacteriz 92.8 0.49 1.1E-05 40.0 6.7 165 29-207 216-388 (733)
439 PRK10115 protease 2; Provision 92.7 8.7 0.00019 35.8 30.0 110 35-158 128-254 (686)
440 COG3490 Uncharacterized protei 92.6 4.4 9.6E-05 32.4 16.8 101 95-202 77-186 (366)
441 PF14761 HPS3_N: Hermansky-Pud 92.5 3.8 8.2E-05 31.3 16.2 151 100-267 30-213 (215)
442 KOG4460 Nuclear pore complex, 92.5 4.9 0.00011 35.1 12.1 28 175-203 104-131 (741)
443 PF10168 Nup88: Nuclear pore c 92.4 9.4 0.0002 35.6 20.0 77 129-207 85-181 (717)
444 KOG2377 Uncharacterized conser 92.2 4.9 0.00011 34.4 11.6 122 173-323 65-187 (657)
445 TIGR02276 beta_rpt_yvtn 40-res 92.2 0.92 2E-05 24.0 5.5 32 95-126 1-32 (42)
446 PF12768 Rax2: Cortical protei 91.9 4.9 0.00011 32.5 11.2 97 108-206 16-124 (281)
447 KOG4460 Nuclear pore complex, 91.9 6.5 0.00014 34.4 12.2 75 91-166 109-205 (741)
448 PF14781 BBS2_N: Ciliary BBSom 91.8 3.3 7.1E-05 28.9 9.4 86 252-340 12-100 (136)
449 KOG1897 Damage-specific DNA bi 91.4 13 0.00029 35.3 27.3 63 249-324 839-901 (1096)
450 PF10168 Nup88: Nuclear pore c 91.4 12 0.00027 34.9 16.8 81 34-119 85-182 (717)
451 TIGR03074 PQQ_membr_DH membran 91.3 6.8 0.00015 36.8 12.9 109 100-212 196-351 (764)
452 PF10647 Gmad1: Lipoprotein Lp 91.0 6.9 0.00015 31.2 17.2 165 130-322 25-198 (253)
453 COG5167 VID27 Protein involved 90.9 3 6.4E-05 36.2 9.3 58 100-159 575-632 (776)
454 COG5276 Uncharacterized conser 90.8 7.5 0.00016 31.3 28.2 153 33-206 86-242 (370)
455 KOG2280 Vacuolar assembly/sort 90.7 13 0.00029 34.1 16.0 191 108-330 64-255 (829)
456 PF11715 Nup160: Nucleoporin N 89.6 1.9 4.1E-05 39.0 7.9 69 100-168 160-257 (547)
457 KOG2280 Vacuolar assembly/sort 89.1 18 0.0004 33.3 14.3 50 151-206 64-113 (829)
458 KOG1900 Nuclear pore complex, 88.4 18 0.00038 35.7 13.1 166 131-322 81-273 (1311)
459 PF03022 MRJP: Major royal jel 87.8 14 0.00029 30.2 12.3 189 152-346 35-249 (287)
460 COG5276 Uncharacterized conser 87.6 14 0.00029 29.9 23.7 140 100-271 98-244 (370)
461 PF12657 TFIIIC_delta: Transcr 87.5 7.6 0.00016 28.8 8.7 34 173-206 84-122 (173)
462 PF11715 Nup160: Nucleoporin N 87.4 5 0.00011 36.3 9.1 27 98-124 230-256 (547)
463 PF07676 PD40: WD40-like Beta 87.2 2.4 5.2E-05 22.0 4.4 29 289-318 8-38 (39)
464 smart00564 PQQ beta-propeller 86.8 1.8 4E-05 21.4 3.7 26 142-167 7-32 (33)
465 PF08801 Nucleoporin_N: Nup133 86.1 22 0.00048 30.9 13.1 29 241-269 190-220 (422)
466 KOG1898 Splicing factor 3b, su 85.6 36 0.00078 32.9 17.0 178 109-323 854-1050(1205)
467 KOG3616 Selective LIM binding 85.4 17 0.00036 33.6 10.7 90 89-184 18-107 (1636)
468 PF14727 PHTB1_N: PTHB1 N-term 84.9 25 0.00054 30.5 26.7 258 44-319 32-316 (418)
469 PF10214 Rrn6: RNA polymerase 84.8 37 0.00081 32.4 22.2 77 127-204 78-175 (765)
470 PF11635 Med16: Mediator compl 84.3 39 0.00084 32.1 16.7 35 290-326 260-294 (753)
471 PF05935 Arylsulfotrans: Aryls 84.2 30 0.00064 30.8 19.8 111 91-208 153-304 (477)
472 PLN02153 epithiospecifier prot 84.1 24 0.00052 29.6 19.5 23 140-162 85-112 (341)
473 KOG1898 Splicing factor 3b, su 83.6 45 0.00097 32.3 17.1 134 107-268 911-1048(1205)
474 PF01011 PQQ: PQQ enzyme repea 83.5 3.4 7.3E-05 21.4 3.8 27 143-169 2-28 (38)
475 PRK14131 N-acetylneuraminic ac 83.4 28 0.0006 29.8 20.4 12 152-163 190-201 (376)
476 PF12768 Rax2: Cortical protei 83.4 23 0.00049 28.8 12.9 53 150-206 15-73 (281)
477 PF01011 PQQ: PQQ enzyme repea 82.8 4.3 9.2E-05 21.1 4.0 27 100-126 2-28 (38)
478 PF12341 DUF3639: Protein of u 82.6 3.9 8.5E-05 19.4 3.7 25 242-266 3-27 (27)
479 KOG2377 Uncharacterized conser 82.1 33 0.00072 29.7 11.6 76 238-322 64-141 (657)
480 PF08801 Nucleoporin_N: Nup133 82.0 34 0.00073 29.8 14.8 31 175-206 190-220 (422)
481 PF10584 Proteasome_A_N: Prote 82.0 0.64 1.4E-05 21.1 0.5 8 339-346 7-14 (23)
482 PRK10115 protease 2; Provision 81.8 46 0.001 31.3 27.0 110 90-206 131-256 (686)
483 PRK13684 Ycf48-like protein; P 81.7 30 0.00065 29.0 20.3 155 84-268 173-331 (334)
484 KOG3616 Selective LIM binding 79.6 5.6 0.00012 36.4 5.8 71 127-205 13-83 (1636)
485 PF12657 TFIIIC_delta: Transcr 79.1 24 0.00051 26.2 9.0 28 242-269 87-122 (173)
486 PLN00033 photosystem II stabil 78.9 42 0.00091 29.0 17.5 154 33-202 238-396 (398)
487 TIGR03547 muta_rot_YjhT mutatr 78.1 40 0.00087 28.3 21.9 43 151-196 168-210 (346)
488 KOG3522 Predicted guanine nucl 78.0 43 0.00093 31.5 10.7 212 99-342 548-769 (925)
489 PLN02193 nitrile-specifier pro 77.7 51 0.0011 29.3 20.5 64 140-206 228-303 (470)
490 TIGR03547 muta_rot_YjhT mutatr 77.4 42 0.00092 28.2 20.5 55 140-196 63-128 (346)
491 PF03088 Str_synth: Strictosid 76.6 3.7 8E-05 26.5 3.0 38 309-346 33-70 (89)
492 COG3292 Predicted periplasmic 75.4 62 0.0013 29.1 14.7 152 32-202 163-315 (671)
493 TIGR03548 mutarot_permut cycli 75.4 46 0.001 27.7 17.9 196 96-324 13-282 (323)
494 PF07995 GSDH: Glucose / Sorbo 74.5 50 0.0011 27.7 13.8 106 87-198 5-136 (331)
495 TIGR02604 Piru_Ver_Nterm putat 74.2 55 0.0012 27.9 16.5 100 89-194 17-142 (367)
496 PF13570 PQQ_3: PQQ-like domai 74.2 10 0.00022 19.8 4.0 23 247-269 18-40 (40)
497 COG1520 FOG: WD40-like repeat 73.4 57 0.0012 27.8 19.5 200 96-331 68-278 (370)
498 PF10214 Rrn6: RNA polymerase 72.7 91 0.002 29.9 23.5 169 31-207 77-278 (765)
499 PF07250 Glyoxal_oxid_N: Glyox 72.4 47 0.001 26.4 11.3 85 110-196 48-138 (243)
500 smart00036 CNH Domain found in 71.1 58 0.0013 26.9 25.5 58 50-116 14-73 (302)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.7e-50 Score=307.52 Aligned_cols=297 Identities=20% Similarity=0.325 Sum_probs=249.5
Q ss_pred cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (346)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (346)
+-.++...+.||.++|.|++|+| +|..||+|+.|. +++||+.+..+...++. |..-|.+++|+ |||+
T Consensus 103 pvtrCssS~~GH~e~Vl~~~fsp----~g~~l~tGsGD~TvR~WD~~TeTp~~t~Kg-----H~~WVlcvaws--PDgk- 170 (480)
T KOG0271|consen 103 PVTRCSSSIAGHGEAVLSVQFSP----TGSRLVTGSGDTTVRLWDLDTETPLFTCKG-----HKNWVLCVAWS--PDGK- 170 (480)
T ss_pred ccceeccccCCCCCcEEEEEecC----CCceEEecCCCceEEeeccCCCCcceeecC-----CccEEEEEEEC--CCcc-
Confidence 44567788899999999999999 789999999999 99999999998888875 77888888887 9999
Q ss_pred EEEEeecCCeEEEEEccCccee-eeeccCCCceEEEEEeCC----CCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC
Q 019117 100 FLVAGGINGIIRVIDVSNEKLH-KSFVGHGDSINEIRTQPL----KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR 174 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 174 (346)
.||+|+.||+|++||..+++++ ..+.+|...|++++|.|- ...+|++++.||.|+|||+..++++..+. +|.
T Consensus 171 ~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls---gHT 247 (480)
T KOG0271|consen 171 KIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS---GHT 247 (480)
T ss_pred hhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec---cCc
Confidence 9999999999999999998755 678999999999999872 45689999999999999999999999999 899
Q ss_pred cceEEEEecCCCCcEEEEEecCCeEEEEEccccceee--ee------ceeec-------------CCCCC----------
Q 019117 175 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYV--EK------SFTWT-------------DLPSK---------- 223 (346)
Q Consensus 175 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~------~~~~~-------------~~~~~---------- 223 (346)
.+|+|+.|- +..++++|+.|++|++|+...+.... .. ..... +....
T Consensus 248 ~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al 325 (480)
T KOG0271|consen 248 ASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKAL 325 (480)
T ss_pred cceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHH
Confidence 999999996 67899999999999999987722110 00 00000 00000
Q ss_pred -------------------------CCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCC
Q 019117 224 -------------------------FPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE 276 (346)
Q Consensus 224 -------------------------~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~ 276 (346)
.......+++..+.+|...|..+.|+ +.++++++.|..|++||.++++
T Consensus 326 ~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk----- 400 (480)
T KOG0271|consen 326 ERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGK----- 400 (480)
T ss_pred HHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcc-----
Confidence 01222234566778899999999999 7899999999999999999998
Q ss_pred ccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee-eeeeEEEEEecCCCC
Q 019117 277 GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR-LICFSLHVKYNPQSV 345 (346)
Q Consensus 277 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~spdg~ 345 (346)
.+..+.+|-+.|+.++|+.|. ++|++|+.|.++++|++++.+...-.. +...+.++.|+|||.
T Consensus 401 ----~lasfRGHv~~VYqvawsaDs--RLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~ 464 (480)
T KOG0271|consen 401 ----FLASFRGHVAAVYQVAWSADS--RLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQ 464 (480)
T ss_pred ----hhhhhhhccceeEEEEeccCc--cEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCc
Confidence 789999999999999999999 799999999999999999987544332 445589999999996
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.6e-48 Score=299.35 Aligned_cols=250 Identities=25% Similarity=0.416 Sum_probs=231.4
Q ss_pred cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (346)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (346)
+.....++|.||.+.|.++.|+|.+ ++.-+|+|+.|+ +++|++.....+..+.. |...|..++|. |+|+
T Consensus 205 ~~~~~~~~l~gH~~~v~~~~fhP~~--~~~~lat~s~Dgtvklw~~~~e~~l~~l~g-----H~~RVs~VafH--PsG~- 274 (459)
T KOG0272|consen 205 PQCNLLQTLRGHTSRVGAAVFHPVD--SDLNLATASADGTVKLWKLSQETPLQDLEG-----HLARVSRVAFH--PSGK- 274 (459)
T ss_pred CCcceeEEEeccccceeeEEEccCC--CccceeeeccCCceeeeccCCCcchhhhhc-----chhhheeeeec--CCCc-
Confidence 3458889999999999999999953 367999999999 99999988877777765 66677666655 9999
Q ss_pred EEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEE
Q 019117 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS 179 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 179 (346)
+|++++.|.+-++||+.++..+....+|...|.+++|.| ++.++++|+.|..-+|||+++++++..+. +|..+|.+
T Consensus 275 ~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~---gH~k~I~~ 350 (459)
T KOG0272|consen 275 FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLA---GHIKEILS 350 (459)
T ss_pred eeeecccccchhhcccccchhhHhhcccccccceeEecC-CCceeeccCccchhheeecccCcEEEEec---ccccceee
Confidence 999999999999999999999999999999999999999 99999999999999999999999999999 89999999
Q ss_pred EEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEE
Q 019117 180 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSK 256 (346)
Q Consensus 180 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~ 256 (346)
++|+| +|..++||+.|++++|||++. ...+..+..|.+-|+.+.|+ |.+|+++
T Consensus 351 V~fsP-NGy~lATgs~Dnt~kVWDLR~-----------------------r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta 406 (459)
T KOG0272|consen 351 VAFSP-NGYHLATGSSDNTCKVWDLRM-----------------------RSELYTIPAHSNLVSQVKYSPQEGYFLVTA 406 (459)
T ss_pred EeECC-CceEEeecCCCCcEEEeeecc-----------------------cccceecccccchhhheEecccCCeEEEEc
Confidence 99999 999999999999999999998 55688999999999999998 7899999
Q ss_pred eecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117 257 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (346)
Q Consensus 257 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd 319 (346)
+.|++++||...+.. +++.+.+|++.|.++++++|+ .++++++.|.++++|.
T Consensus 407 syD~t~kiWs~~~~~---------~~ksLaGHe~kV~s~Dis~d~--~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 407 SYDNTVKIWSTRTWS---------PLKSLAGHEGKVISLDISPDS--QAIATSSFDRTIKLWR 458 (459)
T ss_pred ccCcceeeecCCCcc---------cchhhcCCccceEEEEeccCC--ceEEEeccCceeeecc
Confidence 999999999999887 899999999999999999999 6999999999999995
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.6e-46 Score=288.86 Aligned_cols=276 Identities=18% Similarity=0.290 Sum_probs=246.4
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (346)
..+...-.|-..+|..+.|++ +++.||||+-+| +++|+......+..+.+ |...+.++.|.+..++. .+
T Consensus 165 ~~l~~SQ~gd~rPis~~~fS~----ds~~laT~swsG~~kvW~~~~~~~~~~l~g-----H~~~v~~~~fhP~~~~~-~l 234 (459)
T KOG0272|consen 165 LELVCSQVGDTRPISGCSFSR----DSKHLATGSWSGLVKVWSVPQCNLLQTLRG-----HTSRVGAAVFHPVDSDL-NL 234 (459)
T ss_pred hhhhhhhccCCCcceeeEeec----CCCeEEEeecCCceeEeecCCcceeEEEec-----cccceeeEEEccCCCcc-ce
Confidence 333444456788999999998 789999999999 99999988877777775 77788888887332244 89
Q ss_pred EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117 102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 181 (346)
Q Consensus 102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 181 (346)
|+|+.||++++|++.+..++..+.+|...|..++|+| ++++|+|++.|.+-++||++++..+.... +|...|.+++
T Consensus 235 at~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QE---GHs~~v~~ia 310 (459)
T KOG0272|consen 235 ATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQE---GHSKGVFSIA 310 (459)
T ss_pred eeeccCCceeeeccCCCcchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhhHhhc---ccccccceeE
Confidence 9999999999999999999999999999999999999 99999999999999999999998887777 8999999999
Q ss_pred ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeec
Q 019117 182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD 259 (346)
Q Consensus 182 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d 259 (346)
|+| +|.+++||+.|..-+|||+++ ...+..+.+|.+.|.++.|+ |..|+||+.|
T Consensus 311 f~~-DGSL~~tGGlD~~~RvWDlRt-----------------------gr~im~L~gH~k~I~~V~fsPNGy~lATgs~D 366 (459)
T KOG0272|consen 311 FQP-DGSLAATGGLDSLGRVWDLRT-----------------------GRCIMFLAGHIKEILSVAFSPNGYHLATGSSD 366 (459)
T ss_pred ecC-CCceeeccCccchhheeeccc-----------------------CcEEEEecccccceeeEeECCCceEEeecCCC
Confidence 999 999999999999999999999 55788899999999999999 7799999999
Q ss_pred CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce-eeeeeeeEEEE
Q 019117 260 NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL-IARLICFSLHV 338 (346)
Q Consensus 260 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~ 338 (346)
++++|||++..+ .+..+.+|..-|+.++|+|+.. .+|++++.|++++||...+..++. ...+.+.|.++
T Consensus 367 nt~kVWDLR~r~---------~ly~ipAH~nlVS~Vk~~p~~g-~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~ 436 (459)
T KOG0272|consen 367 NTCKVWDLRMRS---------ELYTIPAHSNLVSQVKYSPQEG-YFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISL 436 (459)
T ss_pred CcEEEeeecccc---------cceecccccchhhheEecccCC-eEEEEcccCcceeeecCCCcccchhhcCCccceEEE
Confidence 999999999876 6889999999999999999433 799999999999999999998766 45677789999
Q ss_pred EecCCCCC
Q 019117 339 KYNPQSVY 346 (346)
Q Consensus 339 ~~spdg~~ 346 (346)
..+|||.+
T Consensus 437 Dis~d~~~ 444 (459)
T KOG0272|consen 437 DISPDSQA 444 (459)
T ss_pred EeccCCce
Confidence 99999964
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8.9e-44 Score=263.34 Aligned_cols=276 Identities=20% Similarity=0.329 Sum_probs=241.8
Q ss_pred cccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCC
Q 019117 19 KKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDG 97 (346)
Q Consensus 19 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 97 (346)
.+-.++..++|+||.+.|+++.|++ +.+++++++.|+ +.|||..+....+.+.- ...+.+..+|+|.|
T Consensus 41 ~~i~~~~rr~LkGH~~Ki~~~~ws~----Dsr~ivSaSqDGklIvWDs~TtnK~haipl-------~s~WVMtCA~sPSg 109 (343)
T KOG0286|consen 41 GRIQMRTRRTLKGHLNKIYAMDWST----DSRRIVSASQDGKLIVWDSFTTNKVHAIPL-------PSSWVMTCAYSPSG 109 (343)
T ss_pred eeeeeeeEEEecccccceeeeEecC----CcCeEEeeccCCeEEEEEcccccceeEEec-------CceeEEEEEECCCC
Confidence 4556778899999999999999999 789999999999 99999999888776653 23455666677999
Q ss_pred CcEEEEeecCCeEEEEEccCc------ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccC
Q 019117 98 IPFLVAGGINGIIRVIDVSNE------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG 171 (346)
Q Consensus 98 ~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 171 (346)
+ ++|.|+.|+...||++.+. +..+.+.+|++.+.++.|-+ ...|++++.|.++.+||+++++.+..|.
T Consensus 110 ~-~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~~f~--- 183 (343)
T KOG0286|consen 110 N-FVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQVFH--- 183 (343)
T ss_pred C-eEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceEEEEec---
Confidence 9 9999999999999999865 35567899999999999986 5789999999999999999999999999
Q ss_pred CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--
Q 019117 172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-- 249 (346)
Q Consensus 172 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 249 (346)
+|.+.|.+++++|.+++.+++|+.|+..++||+|. ...+.++.+|+..|.++.|.
T Consensus 184 GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-----------------------~~c~qtF~ghesDINsv~ffP~ 240 (343)
T KOG0286|consen 184 GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-----------------------GQCVQTFEGHESDINSVRFFPS 240 (343)
T ss_pred CCcccEEEEecCCCCCCeEEecccccceeeeeccC-----------------------cceeEeecccccccceEEEccC
Confidence 89999999999998899999999999999999999 56788999999999999998
Q ss_pred CCEEEEEeecCeEEEEcCCCCCCCCCCcccccccccc--CCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce
Q 019117 250 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP--VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL 327 (346)
Q Consensus 250 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 327 (346)
|.-+++|+.|++.|+||++..+. +..+. ....+|++++||..| ++|.+|..|..+.+||.-.++.+.
T Consensus 241 G~afatGSDD~tcRlyDlRaD~~---------~a~ys~~~~~~gitSv~FS~SG--RlLfagy~d~~c~vWDtlk~e~vg 309 (343)
T KOG0286|consen 241 GDAFATGSDDATCRLYDLRADQE---------LAVYSHDSIICGITSVAFSKSG--RLLFAGYDDFTCNVWDTLKGERVG 309 (343)
T ss_pred CCeeeecCCCceeEEEeecCCcE---------EeeeccCcccCCceeEEEcccc--cEEEeeecCCceeEeeccccceEE
Confidence 88999999999999999998763 33332 235689999999999 799999999999999998887654
Q ss_pred -eeeeeeeEEEEEecCCCC
Q 019117 328 -IARLICFSLHVKYNPQSV 345 (346)
Q Consensus 328 -~~~~~~~~~~~~~spdg~ 345 (346)
...+...+.++..+|||-
T Consensus 310 ~L~GHeNRvScl~~s~DG~ 328 (343)
T KOG0286|consen 310 VLAGHENRVSCLGVSPDGM 328 (343)
T ss_pred EeeccCCeeEEEEECCCCc
Confidence 345666799999999983
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.9e-45 Score=279.50 Aligned_cols=250 Identities=20% Similarity=0.304 Sum_probs=220.5
Q ss_pred eeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEE---cCCCCc
Q 019117 24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWAC---NVDGIP 99 (346)
Q Consensus 24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~ 99 (346)
.+..+.++|...|.|++|+| ||+.+|+|+.++ |++||..+++++..-. ..|...|.+++|.+ .|..+
T Consensus 148 Tp~~t~KgH~~WVlcvawsP----Dgk~iASG~~dg~I~lwdpktg~~~g~~l----~gH~K~It~Lawep~hl~p~~r- 218 (480)
T KOG0271|consen 148 TPLFTCKGHKNWVLCVAWSP----DGKKIASGSKDGSIRLWDPKTGQQIGRAL----RGHKKWITALAWEPLHLVPPCR- 218 (480)
T ss_pred CcceeecCCccEEEEEEECC----CcchhhccccCCeEEEecCCCCCcccccc----cCcccceeEEeecccccCCCcc-
Confidence 34567799999999999999 899999999999 9999999988754322 24889999999974 35677
Q ss_pred EEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccC--------
Q 019117 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG-------- 171 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------- 171 (346)
+|++++.||.++|||+..++++..+.+|+.+|+|+.|- +..++++|+.|++|++|+...|++.+.++...
T Consensus 219 ~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lal 296 (480)
T KOG0271|consen 219 RLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLAL 296 (480)
T ss_pred ceecccCCCCEEEEEccCceEEEEeccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeec
Confidence 99999999999999999999999999999999999996 46799999999999999988766554444221
Q ss_pred --------------------------------------------------------------------CCCcceEEEEec
Q 019117 172 --------------------------------------------------------------------GHRNEVLSVDFH 183 (346)
Q Consensus 172 --------------------------------------------------------------------~~~~~v~~~~~~ 183 (346)
+|...|+.+.|+
T Consensus 297 sTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fS 376 (480)
T KOG0271|consen 297 STDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFS 376 (480)
T ss_pred cchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEEC
Confidence 788889999999
Q ss_pred CCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCe
Q 019117 184 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNE 261 (346)
Q Consensus 184 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~ 261 (346)
| ++.++++++.|..|++||.++ ++.+.++.+|-..|..++|+ .++|++|+.|.+
T Consensus 377 P-d~r~IASaSFDkSVkLW~g~t-----------------------Gk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsT 432 (480)
T KOG0271|consen 377 P-DGRYIASASFDKSVKLWDGRT-----------------------GKFLASFRGHVAAVYQVAWSADSRLLVSGSKDST 432 (480)
T ss_pred C-CccEEEEeecccceeeeeCCC-----------------------cchhhhhhhccceeEEEEeccCccEEEEcCCCce
Confidence 9 999999999999999999998 55678899999999999999 569999999999
Q ss_pred EEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117 262 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (346)
Q Consensus 262 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd 319 (346)
+++|++++.+ ....+.+|...|.++.|+||| ..+++|+.|..+++|.
T Consensus 433 LKvw~V~tkK---------l~~DLpGh~DEVf~vDwspDG--~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 433 LKVWDVRTKK---------LKQDLPGHADEVFAVDWSPDG--QRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEEEeeeee---------ecccCCCCCceEEEEEecCCC--ceeecCCCceEEEeec
Confidence 9999999987 788899999999999999999 6899999999999995
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-43 Score=258.67 Aligned_cols=274 Identities=21% Similarity=0.328 Sum_probs=226.7
Q ss_pred ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc-----eeeeEeeeecCCCccceEEEEEEEcC
Q 019117 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG-----VIAALQSYVDEDKEESFYTVSWACNV 95 (346)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~ 95 (346)
...+..++.+|++.|+.++..+. +.+.+++++.|. +.+|++.... .++.+. +|...|..+.++ +
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~---~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~-----GHsH~v~dv~~s--~ 73 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIK---NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT-----GHSHFVSDVVLS--S 73 (315)
T ss_pred hheeeeeecCCCceEEEEEeecC---CCceEEEcccceEEEEEEeccCccccCceeeeee-----ccceEecceEEc--c
Confidence 45667788999999999999983 358999999999 9999987543 333443 377788888777 8
Q ss_pred CCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCc
Q 019117 96 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN 175 (346)
Q Consensus 96 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 175 (346)
+|+ +.++++.|+.+++||+.+++..+.+.+|...|.+++|++ +...+++|+.|.+|++|+.. +.+..++... .+.+
T Consensus 74 dg~-~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~-g~ck~t~~~~-~~~~ 149 (315)
T KOG0279|consen 74 DGN-FALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTL-GVCKYTIHED-SHRE 149 (315)
T ss_pred CCc-eEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeec-ccEEEEEecC-CCcC
Confidence 998 999999999999999999999999999999999999999 89999999999999999987 4555555421 2388
Q ss_pred ceEEEEecCCC-CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCE
Q 019117 176 EVLSVDFHPSD-IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDF 252 (346)
Q Consensus 176 ~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~ 252 (346)
.|.|+.|+|+. ..+|++++.|++|++||+++. +....+.+|+..++.+.++ |.+
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-----------------------~l~~~~~gh~~~v~t~~vSpDGsl 206 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-----------------------QLRTTFIGHSGYVNTVTVSPDGSL 206 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCc-----------------------chhhccccccccEEEEEECCCCCE
Confidence 99999999943 688999999999999999993 3455778899999999999 889
Q ss_pred EEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee
Q 019117 253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI 332 (346)
Q Consensus 253 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 332 (346)
+++|+.||.+.+||++.++ .++.+. +...|.+++|+|+. +.++...+..|+|||++++..+...++.
T Consensus 207 casGgkdg~~~LwdL~~~k---------~lysl~-a~~~v~sl~fspnr---ywL~~at~~sIkIwdl~~~~~v~~l~~d 273 (315)
T KOG0279|consen 207 CASGGKDGEAMLWDLNEGK---------NLYSLE-AFDIVNSLCFSPNR---YWLCAATATSIKIWDLESKAVVEELKLD 273 (315)
T ss_pred EecCCCCceEEEEEccCCc---------eeEecc-CCCeEeeEEecCCc---eeEeeccCCceEEEeccchhhhhhcccc
Confidence 9999999999999999887 455544 45689999999986 4444555667999999999876655443
Q ss_pred e----------eEEEEEecCCCC
Q 019117 333 C----------FSLHVKYNPQSV 345 (346)
Q Consensus 333 ~----------~~~~~~~spdg~ 345 (346)
. ...+++||+||+
T Consensus 274 ~~g~s~~~~~~~clslaws~dG~ 296 (315)
T KOG0279|consen 274 GIGPSSKAGDPICLSLAWSADGQ 296 (315)
T ss_pred ccccccccCCcEEEEEEEcCCCc
Confidence 2 145699999996
No 7
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-41 Score=257.68 Aligned_cols=278 Identities=19% Similarity=0.319 Sum_probs=244.2
Q ss_pred cccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcC
Q 019117 17 PSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV 95 (346)
Q Consensus 17 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 95 (346)
....++..+.+.+.+|..+|+.+-|+| +..+++++++|. |++||..+++....+++ |...+..++|. .
T Consensus 92 ~~wipRp~l~~~l~g~r~~vt~v~~hp----~~~~v~~as~d~tikv~D~~tg~~e~~LrG-----Ht~sv~di~~~--a 160 (406)
T KOG0295|consen 92 ALWIPRPNLVQKLAGHRSSVTRVIFHP----SEALVVSASEDATIKVFDTETGELERSLRG-----HTDSVFDISFD--A 160 (406)
T ss_pred hhcCCCCCchhhhhccccceeeeeecc----CceEEEEecCCceEEEEEccchhhhhhhhc-----cccceeEEEEe--c
Confidence 344466677888899999999999999 678999999898 99999999999888886 55667777666 7
Q ss_pred CCCcEEEEeecCCeEEEEEccC-cceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC
Q 019117 96 DGIPFLVAGGINGIIRVIDVSN-EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR 174 (346)
Q Consensus 96 ~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 174 (346)
.|+ +|++++.|-.+++||..+ .++++.+.+|.-.|.++.|-| .+.++++++.|.+|+.|++.++.++.++. +|.
T Consensus 161 ~Gk-~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~---~h~ 235 (406)
T KOG0295|consen 161 SGK-YLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFP---GHS 235 (406)
T ss_pred Ccc-EEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEecccceeEEecc---Cch
Confidence 898 999999999999999987 567888899999999999999 78999999999999999999999999999 899
Q ss_pred cceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-----
Q 019117 175 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL----- 249 (346)
Q Consensus 175 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----- 249 (346)
..|+.++.+. ++.++++++.|.++++|-+.+ ..+...+..|+..|-|++|.
T Consensus 236 ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t-----------------------~~~k~~lR~hEh~vEci~wap~~~~ 291 (406)
T KOG0295|consen 236 EWVRMVRVNQ-DGTIIASCSNDQTLRVWVVAT-----------------------KQCKAELREHEHPVECIAWAPESSY 291 (406)
T ss_pred HhEEEEEecC-CeeEEEecCCCceEEEEEecc-----------------------chhhhhhhccccceEEEEecccccC
Confidence 9999999996 999999999999999999988 33455677788888888873
Q ss_pred -------C-----CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEE
Q 019117 250 -------G-----DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV 317 (346)
Q Consensus 250 -------~-----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~i 317 (346)
| +++.+++.|++|++||+.++. ++.++.+|...|..++|+|.| +||+++.+|+++++
T Consensus 292 ~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~---------cL~tL~ghdnwVr~~af~p~G--kyi~ScaDDktlrv 360 (406)
T KOG0295|consen 292 PSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM---------CLFTLVGHDNWVRGVAFSPGG--KYILSCADDKTLRV 360 (406)
T ss_pred cchhhccCCCCCccEEEeecccceEEEEeccCCe---------EEEEEecccceeeeeEEcCCC--eEEEEEecCCcEEE
Confidence 2 599999999999999999987 899999999999999999999 79999999999999
Q ss_pred EEcCCCCcceeee-eeeeEEEEEecCCCC
Q 019117 318 WELQSSPPVLIAR-LICFSLHVKYNPQSV 345 (346)
Q Consensus 318 wd~~~~~~~~~~~-~~~~~~~~~~spdg~ 345 (346)
||+++++...... ++..++++.|..+-.
T Consensus 361 wdl~~~~cmk~~~ah~hfvt~lDfh~~~p 389 (406)
T KOG0295|consen 361 WDLKNLQCMKTLEAHEHFVTSLDFHKTAP 389 (406)
T ss_pred EEeccceeeeccCCCcceeEEEecCCCCc
Confidence 9999988766544 445588888876654
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1e-39 Score=240.37 Aligned_cols=271 Identities=18% Similarity=0.233 Sum_probs=217.3
Q ss_pred ceeeeccccccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceE
Q 019117 9 EPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFY 87 (346)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~ 87 (346)
..-.|.++.....-..+++.|+||...|..++.++ +|++.++++.|+ +++||+.+++....+.+ |...|.
T Consensus 39 ~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~----dg~~alS~swD~~lrlWDl~~g~~t~~f~G-----H~~dVl 109 (315)
T KOG0279|consen 39 TIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS----DGNFALSASWDGTLRLWDLATGESTRRFVG-----HTKDVL 109 (315)
T ss_pred EEEEEEeccCccccCceeeeeeccceEecceEEcc----CCceEEeccccceEEEEEecCCcEEEEEEe-----cCCceE
Confidence 34456666655555677889999999999999999 899999999999 99999999988777765 777887
Q ss_pred EEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeecc--CCCceEEEEEeCCC-CceEEEeeCCCCEEEEecCCCeeE
Q 019117 88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG--HGDSINEIRTQPLK-PSLVVSASKDESVRLWNVQTGICI 164 (346)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~ 164 (346)
+++++ +|++ .+++|+.|.+|++|+.... +..++.. +.+.|.|+.|+|.. ..+|++++.|++|++||+++.+..
T Consensus 110 sva~s--~dn~-qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~ 185 (315)
T KOG0279|consen 110 SVAFS--TDNR-QIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR 185 (315)
T ss_pred EEEec--CCCc-eeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh
Confidence 77766 9998 9999999999999997644 4444433 37899999999943 679999999999999999999988
Q ss_pred EEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE
Q 019117 165 LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD 244 (346)
Q Consensus 165 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (346)
..+. +|.+.++.++++| +|.++++|+.||.+.+||++.. ..++ ...|...|.
T Consensus 186 ~~~~---gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~~-----------------------k~ly-sl~a~~~v~ 237 (315)
T KOG0279|consen 186 TTFI---GHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNEG-----------------------KNLY-SLEAFDIVN 237 (315)
T ss_pred hccc---cccccEEEEEECC-CCCEEecCCCCceEEEEEccCC-----------------------ceeE-eccCCCeEe
Confidence 8888 8999999999999 9999999999999999999983 3333 345788899
Q ss_pred EEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117 245 CNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (346)
Q Consensus 245 ~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~ 322 (346)
+++|+ .++.++...+..|+|||+.+............-.........-.+++|++|| ..|.+|..|+.|++|.+..
T Consensus 238 sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG--~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 238 SLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADG--QTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred eEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCC--cEEEeeecCCcEEEEEeec
Confidence 99999 5577777777889999999886422211100000111223345678999999 6899999999999998753
No 9
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.6e-40 Score=261.13 Aligned_cols=261 Identities=20% Similarity=0.343 Sum_probs=236.9
Q ss_pred CCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 019117 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (346)
Q Consensus 33 ~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 111 (346)
...|++++|+. +|.+||+|+.+| +++|+ ..|..+..+.. |.++|.++.|. ..|. ||++++.|+++.
T Consensus 235 nkdVT~L~Wn~----~G~~LatG~~~G~~riw~-~~G~l~~tl~~-----HkgPI~slKWn--k~G~-yilS~~vD~tti 301 (524)
T KOG0273|consen 235 NKDVTSLDWNN----DGTLLATGSEDGEARIWN-KDGNLISTLGQ-----HKGPIFSLKWN--KKGT-YILSGGVDGTTI 301 (524)
T ss_pred cCCcceEEecC----CCCeEEEeecCcEEEEEe-cCchhhhhhhc-----cCCceEEEEEc--CCCC-EEEeccCCccEE
Confidence 35799999997 899999999999 99999 56666666654 88899999998 8898 999999999999
Q ss_pred EEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEE
Q 019117 112 VIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA 191 (346)
Q Consensus 112 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 191 (346)
+||..+++..+.+.-|..+-.+|.|-. ...|++++.|+.|+|+.+....++.++. +|.++|.++.|+| .+.+|+
T Consensus 302 lwd~~~g~~~q~f~~~s~~~lDVdW~~--~~~F~ts~td~~i~V~kv~~~~P~~t~~---GH~g~V~alk~n~-tg~LLa 375 (524)
T KOG0273|consen 302 LWDAHTGTVKQQFEFHSAPALDVDWQS--NDEFATSSTDGCIHVCKVGEDRPVKTFI---GHHGEVNALKWNP-TGSLLA 375 (524)
T ss_pred EEeccCceEEEeeeeccCCccceEEec--CceEeecCCCceEEEEEecCCCcceeee---cccCceEEEEECC-CCceEE
Confidence 999999999999998998878999984 6789999999999999999999999999 8999999999999 999999
Q ss_pred EEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-----------CCEEEEEeecC
Q 019117 192 SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-----------GDFILSKSVDN 260 (346)
Q Consensus 192 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------~~~l~~~~~d~ 260 (346)
+++.|++++||.+.. ......+..|...|..+.|+ +..+++++.|+
T Consensus 376 S~SdD~TlkiWs~~~-----------------------~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds 432 (524)
T KOG0273|consen 376 SCSDDGTLKIWSMGQ-----------------------SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS 432 (524)
T ss_pred EecCCCeeEeeecCC-----------------------CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC
Confidence 999999999999877 34566788899999999987 34899999999
Q ss_pred eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEe
Q 019117 261 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKY 340 (346)
Q Consensus 261 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 340 (346)
+|++||+..+. ++..+..|..+|.+++|+|++ +++|+|+.||.|.+|++++++....+.-.+.+..++|
T Consensus 433 tV~lwdv~~gv---------~i~~f~kH~~pVysvafS~~g--~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~W 501 (524)
T KOG0273|consen 433 TVKLWDVESGV---------PIHTLMKHQEPVYSVAFSPNG--RYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCW 501 (524)
T ss_pred eEEEEEccCCc---------eeEeeccCCCceEEEEecCCC--cEEEecCCCCeeEeccccchheeEeecCCCeEEEEEE
Confidence 99999999887 788999999999999999999 7999999999999999999999888888888999999
Q ss_pred cCCCCC
Q 019117 341 NPQSVY 346 (346)
Q Consensus 341 spdg~~ 346 (346)
|-+|.+
T Consensus 502 n~~G~k 507 (524)
T KOG0273|consen 502 NAAGDK 507 (524)
T ss_pred cCCCCE
Confidence 998853
No 10
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.3e-40 Score=251.96 Aligned_cols=259 Identities=19% Similarity=0.326 Sum_probs=232.9
Q ss_pred ccccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEc
Q 019117 16 TPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACN 94 (346)
Q Consensus 16 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 94 (346)
.|+...+|++.+.+++|.+.|.|+++.| ..++|++|+.|+ ++|||+.+++....+.+ |-..|..++++
T Consensus 134 rPeWHapwKl~rVi~gHlgWVr~vavdP----~n~wf~tgs~DrtikIwDlatg~LkltltG-----hi~~vr~vavS-- 202 (460)
T KOG0285|consen 134 RPEWHAPWKLYRVISGHLGWVRSVAVDP----GNEWFATGSADRTIKIWDLATGQLKLTLTG-----HIETVRGVAVS-- 202 (460)
T ss_pred CccccCcceehhhhhhccceEEEEeeCC----CceeEEecCCCceeEEEEcccCeEEEeecc-----hhheeeeeeec--
Confidence 3566678999999999999999999999 569999999999 99999999998888775 66677778776
Q ss_pred CCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC
Q 019117 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR 174 (346)
Q Consensus 95 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 174 (346)
+... |+++++.|+.|+.||+...+.++.+.+|-..|.+++.+| .-..|++|+.|.++++||+++...+..+. +|.
T Consensus 203 ~rHp-YlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~---GH~ 277 (460)
T KOG0285|consen 203 KRHP-YLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLS---GHT 277 (460)
T ss_pred ccCc-eEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEec---CCC
Confidence 6676 999999999999999999999999999999999999999 88999999999999999999999999999 899
Q ss_pred cceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCE
Q 019117 175 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDF 252 (346)
Q Consensus 175 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~ 252 (346)
.+|..+.+.| -...+++|+.|++|++||++. +.....+..|...+.+++.+ ...
T Consensus 278 ~~V~~V~~~~-~dpqvit~S~D~tvrlWDl~a-----------------------gkt~~tlt~hkksvral~lhP~e~~ 333 (460)
T KOG0285|consen 278 NPVASVMCQP-TDPQVITGSHDSTVRLWDLRA-----------------------GKTMITLTHHKKSVRALCLHPKENL 333 (460)
T ss_pred CcceeEEeec-CCCceEEecCCceEEEeeecc-----------------------CceeEeeecccceeeEEecCCchhh
Confidence 9999999998 556699999999999999999 55677888999999999998 456
Q ss_pred EEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce
Q 019117 253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL 327 (346)
Q Consensus 253 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 327 (346)
+++++.| .|+-|++..+. .++.+.+|..-|.+++...|+ ++++|+++|.+.+||.+++...+
T Consensus 334 fASas~d-nik~w~~p~g~---------f~~nlsgh~~iintl~~nsD~---v~~~G~dng~~~fwdwksg~nyQ 395 (460)
T KOG0285|consen 334 FASASPD-NIKQWKLPEGE---------FLQNLSGHNAIINTLSVNSDG---VLVSGGDNGSIMFWDWKSGHNYQ 395 (460)
T ss_pred hhccCCc-cceeccCCccc---------hhhccccccceeeeeeeccCc---eEEEcCCceEEEEEecCcCcccc
Confidence 7777776 59999998877 678899999999999999987 89999999999999999986443
No 11
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1e-40 Score=277.73 Aligned_cols=249 Identities=21% Similarity=0.333 Sum_probs=221.1
Q ss_pred ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc--------eeeeE------------------eeeecC
Q 019117 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG--------VIAAL------------------QSYVDE 80 (346)
Q Consensus 28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~--------~~~~~------------------~~~~~~ 80 (346)
++.--...++|..|++ ++.++|.|-.|. |++|.+...+ .+..+ ......
T Consensus 373 T~~nt~~~v~ca~fSd----dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~ 448 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSD----DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY 448 (707)
T ss_pred EEEEcCCcceeEeecC----CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence 3333456799999998 778999999888 9999986311 11111 011123
Q ss_pred CCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC
Q 019117 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160 (346)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 160 (346)
+|.++|+.++|+ |+.+ +|++++.|+++++|.+.+..++-.+++|..+|+++.|+| .+.+|||++.|++-++|....
T Consensus 449 GH~GPVyg~sFs--Pd~r-fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~ 524 (707)
T KOG0263|consen 449 GHSGPVYGCSFS--PDRR-FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDH 524 (707)
T ss_pred cCCCceeeeeec--cccc-ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeeccc
Confidence 588999988887 9998 999999999999999999999999999999999999999 899999999999999999999
Q ss_pred CeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc
Q 019117 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240 (346)
Q Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (346)
.++++.+. +|-+.|.|+.|+| +..++++|+.|.+|++||+.+ +..++.+.+|.
T Consensus 525 ~~PlRifa---ghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~-----------------------G~~VRiF~GH~ 577 (707)
T KOG0263|consen 525 NKPLRIFA---GHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVST-----------------------GNSVRIFTGHK 577 (707)
T ss_pred CCchhhhc---ccccccceEEECC-cccccccCCCCceEEEEEcCC-----------------------CcEEEEecCCC
Confidence 89999988 8999999999999 999999999999999999999 55688899999
Q ss_pred cceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117 241 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (346)
Q Consensus 241 ~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw 318 (346)
.+|.+++|+ |.+|++|+.||.|.+||+.+++ .+..+.+|.+.|.++.||.|| ..||+|+.|++|++|
T Consensus 578 ~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~---------~v~~l~~Ht~ti~SlsFS~dg--~vLasgg~DnsV~lW 646 (707)
T KOG0263|consen 578 GPVTALAFSPCGRYLASGDEDGLIKIWDLANGS---------LVKQLKGHTGTIYSLSFSRDG--NVLASGGADNSVRLW 646 (707)
T ss_pred CceEEEEEcCCCceEeecccCCcEEEEEcCCCc---------chhhhhcccCceeEEEEecCC--CEEEecCCCCeEEEE
Confidence 999999999 9999999999999999999987 788999999999999999999 799999999999999
Q ss_pred EcCC
Q 019117 319 ELQS 322 (346)
Q Consensus 319 d~~~ 322 (346)
|+..
T Consensus 647 D~~~ 650 (707)
T KOG0263|consen 647 DLTK 650 (707)
T ss_pred Echh
Confidence 9875
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.4e-39 Score=235.96 Aligned_cols=267 Identities=14% Similarity=0.254 Sum_probs=225.7
Q ss_pred cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (346)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (346)
...++..+++...+.|+.+...| ++..||+++...|++||+.++... .+..| +.|.+.|.++.|. .+|+ .
T Consensus 28 ~tG~C~rTiqh~dsqVNrLeiTp----dk~~LAaa~~qhvRlyD~~S~np~-Pv~t~--e~h~kNVtaVgF~--~dgr-W 97 (311)
T KOG0315|consen 28 LTGICSRTIQHPDSQVNRLEITP----DKKDLAAAGNQHVRLYDLNSNNPN-PVATF--EGHTKNVTAVGFQ--CDGR-W 97 (311)
T ss_pred hcCeEEEEEecCccceeeEEEcC----CcchhhhccCCeeEEEEccCCCCC-ceeEE--eccCCceEEEEEe--ecCe-E
Confidence 34566777777778899999999 789999999999999999987753 22223 2377888888887 7899 9
Q ss_pred EEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180 (346)
Q Consensus 101 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 180 (346)
+++|++||+++|||++...+.+.++ |..+|+++..+| +...|++|..+|.|++||+....+...+.. .....|.++
T Consensus 98 MyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liP--e~~~~i~sl 173 (311)
T KOG0315|consen 98 MYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIP--EDDTSIQSL 173 (311)
T ss_pred EEecCCCceEEEEeccCcccchhcc-CCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCC--CCCcceeeE
Confidence 9999999999999999977777666 779999999999 889999999999999999998877776653 345789999
Q ss_pred EecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEee
Q 019117 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV 258 (346)
Q Consensus 181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~ 258 (346)
...| ++.+++.+...|...+|++-.... ...-.|+.++..|+..+..+.++ +++|++++.
T Consensus 174 ~v~~-dgsml~a~nnkG~cyvW~l~~~~~-----------------~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss 235 (311)
T KOG0315|consen 174 TVMP-DGSMLAAANNKGNCYVWRLLNHQT-----------------ASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS 235 (311)
T ss_pred EEcC-CCcEEEEecCCccEEEEEccCCCc-----------------cccceEhhheecccceEEEEEECCCCcEEEeecC
Confidence 9999 999999999999999999987221 12245677899999999999999 789999999
Q ss_pred cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee
Q 019117 259 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA 329 (346)
Q Consensus 259 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 329 (346)
|.+++||+.++.- .....+.+|...++.++||.|+ .||++++.|+.+++|++..++.+..+
T Consensus 236 dktv~iwn~~~~~--------kle~~l~gh~rWvWdc~FS~dg--~YlvTassd~~~rlW~~~~~k~v~qy 296 (311)
T KOG0315|consen 236 DKTVKIWNTDDFF--------KLELVLTGHQRWVWDCAFSADG--EYLVTASSDHTARLWDLSAGKEVRQY 296 (311)
T ss_pred CceEEEEecCCce--------eeEEEeecCCceEEeeeeccCc--cEEEecCCCCceeecccccCceeeec
Confidence 9999999998761 2556778899999999999999 79999999999999999999855543
No 13
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.3e-40 Score=267.29 Aligned_cols=269 Identities=22% Similarity=0.369 Sum_probs=233.1
Q ss_pred eeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE
Q 019117 25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (346)
Q Consensus 25 ~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 103 (346)
..+++..|.++|.++.|+|+ ..++.++-.+| |.|||..+...++.+.. ...+|.+..|. +..+ .+++
T Consensus 5 ~krk~~~rSdRVKsVd~HPt----ePw~la~LynG~V~IWnyetqtmVksfeV-----~~~PvRa~kfi--aRkn-Wiv~ 72 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPT----EPWILAALYNGDVQIWNYETQTMVKSFEV-----SEVPVRAAKFI--ARKN-WIVT 72 (794)
T ss_pred hhhHhhccCCceeeeecCCC----CceEEEeeecCeeEEEecccceeeeeeee-----cccchhhheee--eccc-eEEE
Confidence 34566779999999999994 45666666666 99999999888888775 55667777776 4444 9999
Q ss_pred eecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC-eeEEEecccCCCCcceEEEEe
Q 019117 104 GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-ICILIFAGAGGHRNEVLSVDF 182 (346)
Q Consensus 104 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~ 182 (346)
|+.|..|+||+.++++.+..+.+|.+.|.+++.+| ...+++++|+|-+|++||.+.+ .+.+++. +|...|.+++|
T Consensus 73 GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfe---GH~HyVMqv~f 148 (794)
T KOG0276|consen 73 GSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFE---GHEHYVMQVAF 148 (794)
T ss_pred ecCCceEEEEecccceeeEEeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEc---CcceEEEEEEe
Confidence 99999999999999999999999999999999999 7889999999999999999865 5566777 89999999999
Q ss_pred cCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CC---EEEEEee
Q 019117 183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GD---FILSKSV 258 (346)
Q Consensus 183 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~---~l~~~~~ 258 (346)
+|.+.+.+++++.|++|++|.+.+ ..+.+++.+|...|.|+.|- +. +|++|+.
T Consensus 149 nPkD~ntFaS~sLDrTVKVWslgs-----------------------~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD 205 (794)
T KOG0276|consen 149 NPKDPNTFASASLDRTVKVWSLGS-----------------------PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD 205 (794)
T ss_pred cCCCccceeeeeccccEEEEEcCC-----------------------CCCceeeeccccCcceEEeccCCCcceEEecCC
Confidence 999999999999999999999998 66888999999999999998 44 9999999
Q ss_pred cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee-eEEE
Q 019117 259 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC-FSLH 337 (346)
Q Consensus 259 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~ 337 (346)
|.+|+|||..+.. +++++.+|...|..+.|+|.- .++++|++||+++||+..+-+......+.. .+++
T Consensus 206 D~tiKvWDyQtk~---------CV~TLeGHt~Nvs~v~fhp~l--piiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~ 274 (794)
T KOG0276|consen 206 DLTIKVWDYQTKS---------CVQTLEGHTNNVSFVFFHPEL--PIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWC 274 (794)
T ss_pred CceEEEeecchHH---------HHHHhhcccccceEEEecCCC--cEEEEecCCccEEEecCcceehhhhhhcCCceEEE
Confidence 9999999999877 999999999999999999998 799999999999999999877655544432 3566
Q ss_pred EEecCC
Q 019117 338 VKYNPQ 343 (346)
Q Consensus 338 ~~~spd 343 (346)
++-.+.
T Consensus 275 I~~~k~ 280 (794)
T KOG0276|consen 275 IAAHKG 280 (794)
T ss_pred EeecCC
Confidence 654443
No 14
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.2e-40 Score=244.23 Aligned_cols=275 Identities=20% Similarity=0.361 Sum_probs=232.3
Q ss_pred ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccC-ceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG-GVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (346)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (346)
...+...+.+|++.|+.+.|+| +|.+||+|+.|. |.+|+.... +....++ .|.+.|..+.|. +|+.
T Consensus 36 l~ap~m~l~gh~geI~~~~F~P----~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk-----gHsgAVM~l~~~--~d~s- 103 (338)
T KOG0265|consen 36 LQAPIMLLPGHKGEIYTIKFHP----DGSCFASGGSDRAIVLWNVYGDCENFWVLK-----GHSGAVMELHGM--RDGS- 103 (338)
T ss_pred ccchhhhcCCCcceEEEEEECC----CCCeEeecCCcceEEEEeccccccceeeec-----cccceeEeeeec--cCCC-
Confidence 3445667799999999999999 789999999999 999995533 3333343 488899888887 8898
Q ss_pred EEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEE
Q 019117 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS 179 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 179 (346)
.|++++.|.+++.||+++|+.++.+++|.+-|+.+.-+..+..++.+++.|+++++||+++...++++. ...++++
T Consensus 104 ~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~----~kyqltA 179 (338)
T KOG0265|consen 104 HILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE----NKYQLTA 179 (338)
T ss_pred EEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc----cceeEEE
Confidence 999999999999999999999999999999999998666567788999999999999999999999886 6789999
Q ss_pred EEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe
Q 019117 180 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS 257 (346)
Q Consensus 180 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~ 257 (346)
+.|.. .+..+++|+-|+.|++||++. ......+.+|.+.|+.+..+ |.++++-+
T Consensus 180 v~f~d-~s~qv~sggIdn~ikvWd~r~-----------------------~d~~~~lsGh~DtIt~lsls~~gs~llsns 235 (338)
T KOG0265|consen 180 VGFKD-TSDQVISGGIDNDIKVWDLRK-----------------------NDGLYTLSGHADTITGLSLSRYGSFLLSNS 235 (338)
T ss_pred EEecc-cccceeeccccCceeeecccc-----------------------CcceEEeecccCceeeEEeccCCCcccccc
Confidence 99995 889999999999999999998 56788999999999999998 89999999
Q ss_pred ecCeEEEEcCCCCCCCCCCccccccccccCC----CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee
Q 019117 258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVP----ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC 333 (346)
Q Consensus 258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 333 (346)
.|.++++||++..... ..++..+.+| +.....++|+|++ ..+.+|+.|..+++||..... ..+.+++
T Consensus 236 Md~tvrvwd~rp~~p~-----~R~v~if~g~~hnfeknlL~cswsp~~--~~i~ags~dr~vyvwd~~~r~--~lyklpG 306 (338)
T KOG0265|consen 236 MDNTVRVWDVRPFAPS-----QRCVKIFQGHIHNFEKNLLKCSWSPNG--TKITAGSADRFVYVWDTTSRR--ILYKLPG 306 (338)
T ss_pred ccceEEEEEecccCCC-----CceEEEeecchhhhhhhcceeeccCCC--CccccccccceEEEeeccccc--EEEEcCC
Confidence 9999999999876421 1134455543 2345678999999 789999999999999988754 3444444
Q ss_pred ---eEEEEEecCCCC
Q 019117 334 ---FSLHVKYNPQSV 345 (346)
Q Consensus 334 ---~~~~~~~spdg~ 345 (346)
.++++.|.|..+
T Consensus 307 h~gsvn~~~Fhp~e~ 321 (338)
T KOG0265|consen 307 HYGSVNEVDFHPTEP 321 (338)
T ss_pred cceeEEEeeecCCCc
Confidence 589999999765
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.7e-39 Score=232.77 Aligned_cols=255 Identities=16% Similarity=0.278 Sum_probs=212.3
Q ss_pred ccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc--eeeeec
Q 019117 49 FNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFV 125 (346)
Q Consensus 49 ~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~ 125 (346)
.-+||+++.|. |++|...+|.+...++. .+..|..+.+. |+++ .||+++ ...|++||+++++ ++.++.
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh-----~dsqVNrLeiT--pdk~-~LAaa~-~qhvRlyD~~S~np~Pv~t~e 80 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQH-----PDSQVNRLEIT--PDKK-DLAAAG-NQHVRLYDLNSNNPNPVATFE 80 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEec-----CccceeeEEEc--CCcc-hhhhcc-CCeeEEEEccCCCCCceeEEe
Confidence 36899999998 99999999999999984 55678888777 9998 888887 4679999998875 688999
Q ss_pred cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEcc
Q 019117 126 GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 205 (346)
Q Consensus 126 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 205 (346)
+|+..|+.+.|.. ++..+++|++||+++|||++...+.+.++ |..+|+++..+| +...|++|..+|.|++||+.
T Consensus 81 ~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~----~~spVn~vvlhp-nQteLis~dqsg~irvWDl~ 154 (311)
T KOG0315|consen 81 GHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQ----HNSPVNTVVLHP-NQTELISGDQSGNIRVWDLG 154 (311)
T ss_pred ccCCceEEEEEee-cCeEEEecCCCceEEEEeccCcccchhcc----CCCCcceEEecC-CcceEEeecCCCcEEEEEcc
Confidence 9999999999999 99999999999999999999988888886 889999999999 77889999999999999999
Q ss_pred ccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccc
Q 019117 206 EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQ 283 (346)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 283 (346)
...... ..+......|.++... |.+++.+...|..++|++..... .....++.
T Consensus 155 ~~~c~~----------------------~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~---~s~l~P~~ 209 (311)
T KOG0315|consen 155 ENSCTH----------------------ELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT---ASELEPVH 209 (311)
T ss_pred CCcccc----------------------ccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc---cccceEhh
Confidence 832100 0111122334444443 99999999999999999987442 23445788
Q ss_pred cccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeee---EEEEEecCCCCC
Q 019117 284 KYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICF---SLHVKYNPQSVY 346 (346)
Q Consensus 284 ~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~spdg~~ 346 (346)
+++.|.+.+..+.+|||+ ++||++|.|.+++||+.++. ......+.++ ++.++||-||+|
T Consensus 210 k~~ah~~~il~C~lSPd~--k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~Y 272 (311)
T KOG0315|consen 210 KFQAHNGHILRCLLSPDV--KYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEY 272 (311)
T ss_pred heecccceEEEEEECCCC--cEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccE
Confidence 899999999999999999 79999999999999999987 4444455544 889999999987
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.5e-41 Score=259.66 Aligned_cols=264 Identities=19% Similarity=0.287 Sum_probs=228.8
Q ss_pred CCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeE
Q 019117 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII 110 (346)
Q Consensus 32 h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 110 (346)
-+.+|..|.|.| +|+.|++|+..| +.+|+...-.....+ ..|+..|.++.|+ ++|. ++++|+.+|.|
T Consensus 95 vkc~V~~v~WtP----eGRRLltgs~SGEFtLWNg~~fnFEtil-----QaHDs~Vr~m~ws--~~g~-wmiSgD~gG~i 162 (464)
T KOG0284|consen 95 VKCPVNVVRWTP----EGRRLLTGSQSGEFTLWNGTSFNFETIL-----QAHDSPVRTMKWS--HNGT-WMISGDKGGMI 162 (464)
T ss_pred cccceeeEEEcC----CCceeEeecccccEEEecCceeeHHHHh-----hhhcccceeEEEc--cCCC-EEEEcCCCceE
Confidence 356799999999 889999999988 999996332222222 3589999999998 8898 99999999999
Q ss_pred EEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEE
Q 019117 111 RVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI 190 (346)
Q Consensus 111 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 190 (346)
++|+.+-.........|...|++++|+| +...|+++++||+|+|||....+....+. +|.-.|++++|+| ...++
T Consensus 163 KyWqpnmnnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~---GHgwdVksvdWHP-~kgLi 237 (464)
T KOG0284|consen 163 KYWQPNMNNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLR---GHGWDVKSVDWHP-TKGLI 237 (464)
T ss_pred EecccchhhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheec---cCCCCcceeccCC-cccee
Confidence 9999765544333344559999999999 88999999999999999999998888887 8999999999999 88899
Q ss_pred EEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCC
Q 019117 191 ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPK 268 (346)
Q Consensus 191 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~ 268 (346)
++++.|..|++||.++ ..++.++..|...|..+.|+ +++|+++|.|..++++|++
T Consensus 238 asgskDnlVKlWDprS-----------------------g~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR 294 (464)
T KOG0284|consen 238 ASGSKDNLVKLWDPRS-----------------------GSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR 294 (464)
T ss_pred EEccCCceeEeecCCC-----------------------cchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehh
Confidence 9999999999999999 56788999999999999999 8899999999999999999
Q ss_pred CCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee--eeeeeEEEEEecCCCC
Q 019117 269 MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA--RLICFSLHVKYNPQSV 345 (346)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~spdg~ 345 (346)
+.+ .+..+.+|...|+++.|+|-.+ .+|++|+.||.|..|.+...+++... .+.+.+++++|+|=|-
T Consensus 295 ~mk---------El~~~r~Hkkdv~~~~WhP~~~-~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGh 363 (464)
T KOG0284|consen 295 TMK---------ELFTYRGHKKDVTSLTWHPLNE-SLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGH 363 (464)
T ss_pred HhH---------HHHHhhcchhhheeeccccccc-cceeeccCCCceEEEeccccccccCCCcccccceeeeeccccce
Confidence 766 6899999999999999999887 69999999999999999866665543 4556699999999763
No 17
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.1e-38 Score=231.64 Aligned_cols=269 Identities=20% Similarity=0.320 Sum_probs=214.3
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (346)
+...+.+++|.++|..++|+|. .|.+||+|+.|+ |++|+...+.. ..+.......|...|..++|+ |.|+ +|
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~---~g~ilAscg~Dk~vriw~~~~~~s-~~ck~vld~~hkrsVRsvAws--p~g~-~L 76 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPG---KGVILASCGTDKAVRIWSTSSGDS-WTCKTVLDDGHKRSVRSVAWS--PHGR-YL 76 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccC---CceEEEeecCCceEEEEecCCCCc-EEEEEeccccchheeeeeeec--CCCc-EE
Confidence 4556788999999999999991 267999999999 99999875333 344444555799999999998 8899 99
Q ss_pred EEeecCCeEEEEEccCc--ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEE
Q 019117 102 VAGGINGIIRVIDVSNE--KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS 179 (346)
Q Consensus 102 ~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 179 (346)
++|+.|.++.||.-..+ +++.++.+|...|.+++|++ ++++||++++|..|-||.+..+.........+.|...|..
T Consensus 77 a~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~ 155 (312)
T KOG0645|consen 77 ASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKH 155 (312)
T ss_pred EEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccE
Confidence 99999999999986544 57889999999999999999 9999999999999999999855444333333389999999
Q ss_pred EEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe
Q 019117 180 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS 257 (346)
Q Consensus 180 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~ 257 (346)
+.|+| ...+|++++.|.+|++|+-.... .-....++.+|...|.+++|+ |..|++++
T Consensus 156 V~WHP-t~dlL~S~SYDnTIk~~~~~~dd--------------------dW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s 214 (312)
T KOG0645|consen 156 VIWHP-TEDLLFSCSYDNTIKVYRDEDDD--------------------DWECVQTLDGHENTVWSLAFDNIGSRLVSCS 214 (312)
T ss_pred EEEcC-CcceeEEeccCCeEEEEeecCCC--------------------CeeEEEEecCccceEEEEEecCCCceEEEec
Confidence 99999 88999999999999999876311 134567888899999999998 78999999
Q ss_pred ecCeEEEEcCCCCCCC---------------------------------CCCcccccc-ccccCCCcCeeEEEEeecCCc
Q 019117 258 VDNEIVLWEPKMKEQS---------------------------------PGEGTADIL-QKYPVPECDIWFIKFSCDFHY 303 (346)
Q Consensus 258 ~d~~i~iwd~~~~~~~---------------------------------~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~ 303 (346)
.|++++||...+.-.. +..+....+ .....|...|+++.|.|...
T Consensus 215 dD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~- 293 (312)
T KOG0645|consen 215 DDGTVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVS- 293 (312)
T ss_pred CCcceEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCC-
Confidence 9999999984322100 000111111 23345888999999999544
Q ss_pred ceEEEEcCCCcEEEEEcC
Q 019117 304 NAAAIGNREGKIFVWELQ 321 (346)
Q Consensus 304 ~~l~~~~~dg~i~iwd~~ 321 (346)
.+|++|+.||.|++|.+.
T Consensus 294 ~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 294 NRLASGGDDGIVNFWELE 311 (312)
T ss_pred CceeecCCCceEEEEEec
Confidence 699999999999999875
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.8e-39 Score=238.87 Aligned_cols=246 Identities=17% Similarity=0.266 Sum_probs=211.3
Q ss_pred ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCcee---eeEeeeecCCCccceEEEEEEEcCCCCcEEEE
Q 019117 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI---AALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (346)
Q Consensus 28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 103 (346)
.+.-....|..++|+| .|+++|.|+-|+ ..||++.+.... +..+.+ ..|..-+.++.|. +|+ .|++
T Consensus 92 aipl~s~WVMtCA~sP----Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l--~gHtgylScC~f~--dD~--~ilT 161 (343)
T KOG0286|consen 92 AIPLPSSWVMTCAYSP----SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSREL--AGHTGYLSCCRFL--DDN--HILT 161 (343)
T ss_pred EEecCceeEEEEEECC----CCCeEEecCcCceeEEEecccccccccceeeeee--cCccceeEEEEEc--CCC--ceEe
Confidence 3344567899999999 899999999998 999998854211 111111 2377777777775 555 6999
Q ss_pred eecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEec
Q 019117 104 GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 183 (346)
Q Consensus 104 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 183 (346)
++.|.++.+||+++++.+..+.+|.+.|.++.++|.+++.|++|+-|++.++||++.+.+.+.|. +|+..|+++.|.
T Consensus 162 ~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~---ghesDINsv~ff 238 (343)
T KOG0286|consen 162 GSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFE---GHESDINSVRFF 238 (343)
T ss_pred cCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeec---ccccccceEEEc
Confidence 99999999999999999999999999999999999889999999999999999999999999999 899999999999
Q ss_pred CCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCe
Q 019117 184 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNE 261 (346)
Q Consensus 184 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~ 261 (346)
| ++.-+++|+.|++.++||+|..+. ..++.-..-..+|++++|+ |++|.+|..|.+
T Consensus 239 P-~G~afatGSDD~tcRlyDlRaD~~---------------------~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~ 296 (343)
T KOG0286|consen 239 P-SGDAFATGSDDATCRLYDLRADQE---------------------LAVYSHDSIICGITSVAFSKSGRLLFAGYDDFT 296 (343)
T ss_pred c-CCCeeeecCCCceeEEEeecCCcE---------------------EeeeccCcccCCceeEEEcccccEEEeeecCCc
Confidence 9 999999999999999999998332 2223333345679999998 999999999999
Q ss_pred EEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117 262 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (346)
Q Consensus 262 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd 319 (346)
+.+||.-.++ .+..+.+|+..|.++..+||| ..+++|+.|..++||.
T Consensus 297 c~vWDtlk~e---------~vg~L~GHeNRvScl~~s~DG--~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 297 CNVWDTLKGE---------RVGVLAGHENRVSCLGVSPDG--MAVATGSWDSTLRIWA 343 (343)
T ss_pred eeEeeccccc---------eEEEeeccCCeeEEEEECCCC--cEEEecchhHheeecC
Confidence 9999998776 678888999999999999999 7999999999999994
No 19
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=100.00 E-value=2.7e-39 Score=243.36 Aligned_cols=326 Identities=49% Similarity=0.891 Sum_probs=276.3
Q ss_pred cccceeeeeec-ccCCCceEEEEEEeec-CCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCC
Q 019117 19 KKREYRVTNKL-QEGKRPLYAVVFNFID-SRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD 96 (346)
Q Consensus 19 ~~~~~~~~~~~-~~h~~~v~~~~~~p~~-~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 96 (346)
.++.|+....+ ..|+.+|+.++|++.. -.....+|+.+.+.+.+|.......+..++.+..+.+.+..+.++|++...
T Consensus 23 ~k~~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~ 102 (385)
T KOG1034|consen 23 GKRSYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSN 102 (385)
T ss_pred CccceEeeeehhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCC
Confidence 37888888877 5688999999999622 123478999999999999998888888999999988999999999998765
Q ss_pred -CCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCc
Q 019117 97 -GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN 175 (346)
Q Consensus 97 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 175 (346)
+..++|+|+.-|.|+|.|+.+++....+.+|...|+.+.++|...++++++|.|..|++|++++..++..+....+|..
T Consensus 103 ~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd 182 (385)
T KOG1034|consen 103 TGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD 182 (385)
T ss_pred CCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC
Confidence 5669999999999999999999999999999999999999998889999999999999999999999999998889999
Q ss_pred ceEEEEecCCCCcEEEEEecCCeEEEEEcc--ccceeeeeceeecCCCCC--CCCccceeceE-EEeecccceEEEEecC
Q 019117 176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMK--EFWTYVEKSFTWTDLPSK--FPTKYVQFPVF-IASVHSNYVDCNRWLG 250 (346)
Q Consensus 176 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~i~~~~~~~ 250 (346)
.|.++.|++ ++.++++++.|.+|++|++. ......+.++.+...+.. ++......+.+ +...|.+.|.|+.|-|
T Consensus 183 eVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g 261 (385)
T KOG1034|consen 183 EVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG 261 (385)
T ss_pred cEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh
Confidence 999999998 88999999999999999999 566667777666665554 66666666665 6678999999999999
Q ss_pred CEEEEEeecCeEEEEcCCCCCCC-----CCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCc
Q 019117 251 DFILSKSVDNEIVLWEPKMKEQS-----PGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP 325 (346)
Q Consensus 251 ~~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~ 325 (346)
+++++-+-++.|..|..-..+.. +.......+.++..+.+.|+-+.|+-|...++||.|...|.|++||+...++
T Consensus 262 d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 262 DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence 99999999999999998322221 3334445677888888999999999887668999999999999999999887
Q ss_pred ceeeeee-----eeEEEEEecCCCC
Q 019117 326 VLIARLI-----CFSLHVKYNPQSV 345 (346)
Q Consensus 326 ~~~~~~~-----~~~~~~~~spdg~ 345 (346)
.....+. ..+...+||-||+
T Consensus 342 ~~~ttl~~s~~~~tVRQ~sfS~dgs 366 (385)
T KOG1034|consen 342 PKCTTLTHSKSGSTVRQTSFSRDGS 366 (385)
T ss_pred ccCceEEeccccceeeeeeecccCc
Confidence 4332222 2367789998886
No 20
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.2e-40 Score=257.27 Aligned_cols=249 Identities=20% Similarity=0.375 Sum_probs=218.7
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (346)
|.....+++|.++|+++.|++ ++.++++|+.++ |++|+.. .+.++.++.+ |.+.|.+++|+ |+.. .+
T Consensus 128 fnFEtilQaHDs~Vr~m~ws~----~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ah----h~eaIRdlafS--pnDs-kF 195 (464)
T KOG0284|consen 128 FNFETILQAHDSPVRTMKWSH----NGTWMISGDKGGMIKYWQPN-MNNVKIIQAH----HAEAIRDLAFS--PNDS-KF 195 (464)
T ss_pred eeHHHHhhhhcccceeEEEcc----CCCEEEEcCCCceEEecccc-hhhhHHhhHh----hhhhhheeccC--CCCc-ee
Confidence 444445689999999999999 889999999999 9999954 3445555543 66899999888 6555 79
Q ss_pred EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117 102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 181 (346)
Q Consensus 102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 181 (346)
++++.||+|+|||....+....+.+|.-.|.+++|+| ...++++|+.|..|++||.++++++.++. +|...|..+.
T Consensus 196 ~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh---~HKntVl~~~ 271 (464)
T KOG0284|consen 196 LTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLH---GHKNTVLAVK 271 (464)
T ss_pred EEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCCcchhhhhh---hccceEEEEE
Confidence 9999999999999999998889999999999999999 88899999999999999999999999998 8999999999
Q ss_pred ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEee
Q 019117 182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSV 258 (346)
Q Consensus 182 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~ 258 (346)
|+| ++++|++++.|..++++|++. ...++.+.+|...++++.|+ ..+|.+|+.
T Consensus 272 f~~-n~N~Llt~skD~~~kv~DiR~-----------------------mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~ 327 (464)
T KOG0284|consen 272 FNP-NGNWLLTGSKDQSCKVFDIRT-----------------------MKELFTYRGHKKDVTSLTWHPLNESLFTSGGS 327 (464)
T ss_pred EcC-CCCeeEEccCCceEEEEehhH-----------------------hHHHHHhhcchhhheeeccccccccceeeccC
Confidence 999 889999999999999999997 34577889999999999998 789999999
Q ss_pred cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117 259 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (346)
Q Consensus 259 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~ 321 (346)
||.|..|.+...++ ....-.+|...|++++|+|-| .+|++|+.|..+++|.-.
T Consensus 328 Dgsvvh~~v~~~~p--------~~~i~~AHd~~iwsl~~hPlG--hil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 328 DGSVVHWVVGLEEP--------LGEIPPAHDGEIWSLAYHPLG--HILATGSNDRTVRFWTRN 380 (464)
T ss_pred CCceEEEecccccc--------ccCCCcccccceeeeeccccc--eeEeecCCCcceeeeccC
Confidence 99999999985442 233335688999999999999 799999999999999754
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.3e-38 Score=248.99 Aligned_cols=272 Identities=19% Similarity=0.329 Sum_probs=232.4
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc----eeeeEeee-----ecCCCccceEEEEEEEcCCCCc
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG----VIAALQSY-----VDEDKEESFYTVSWACNVDGIP 99 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~----~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~ 99 (346)
..|..+|.+.+|+|. ...++|+++.+- .++|++.... ....++.. ........|++++|+ .+|.
T Consensus 175 l~~~~~V~~~~WnP~---~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn--~~G~- 248 (524)
T KOG0273|consen 175 LRHESEVFICAWNPL---RDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWN--NDGT- 248 (524)
T ss_pred ccCCCceEEEecCch---hhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEec--CCCC-
Confidence 349999999999993 234889988887 9999987511 11111110 111244679999998 8898
Q ss_pred EEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEE
Q 019117 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS 179 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 179 (346)
+||+|+.||.+++|+ ..+..+.++..|.++|.+++|+. .+++|++++.|+++.+||..+++..+.+. -|..+-..
T Consensus 249 ~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~~q~f~---~~s~~~lD 323 (524)
T KOG0273|consen 249 LLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTVKQQFE---FHSAPALD 323 (524)
T ss_pred eEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEeccCceEEEeee---eccCCccc
Confidence 999999999999999 46788889999999999999999 89999999999999999999999998888 57777688
Q ss_pred EEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe
Q 019117 180 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS 257 (346)
Q Consensus 180 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~ 257 (346)
+.|- +...+++++.|+.|+++.+.. ..|+.++.+|.+.|.++.|+ +.+|++++
T Consensus 324 VdW~--~~~~F~ts~td~~i~V~kv~~-----------------------~~P~~t~~GH~g~V~alk~n~tg~LLaS~S 378 (524)
T KOG0273|consen 324 VDWQ--SNDEFATSSTDGCIHVCKVGE-----------------------DRPVKTFIGHHGEVNALKWNPTGSLLASCS 378 (524)
T ss_pred eEEe--cCceEeecCCCceEEEEEecC-----------------------CCcceeeecccCceEEEEECCCCceEEEec
Confidence 8997 566799999999999999988 66888999999999999999 89999999
Q ss_pred ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCC-------cceEEEEcCCCcEEEEEcCCCCcceee-
Q 019117 258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH-------YNAAAIGNREGKIFVWELQSSPPVLIA- 329 (346)
Q Consensus 258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~~~l~~~~~dg~i~iwd~~~~~~~~~~- 329 (346)
.|++++||+..... ....+.+|...|..+.|+|++. ...+++++.|+.|++||+..+.++..+
T Consensus 379 dD~TlkiWs~~~~~---------~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~ 449 (524)
T KOG0273|consen 379 DDGTLKIWSMGQSN---------SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM 449 (524)
T ss_pred CCCeeEeeecCCCc---------chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec
Confidence 99999999987765 6788899999999999999874 258999999999999999999988876
Q ss_pred eeeeeEEEEEecCCCCC
Q 019117 330 RLICFSLHVKYNPQSVY 346 (346)
Q Consensus 330 ~~~~~~~~~~~spdg~~ 346 (346)
++..+|.+++|||+|+|
T Consensus 450 kH~~pVysvafS~~g~y 466 (524)
T KOG0273|consen 450 KHQEPVYSVAFSPNGRY 466 (524)
T ss_pred cCCCceEEEEecCCCcE
Confidence 77788999999999987
No 22
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.8e-38 Score=225.85 Aligned_cols=267 Identities=21% Similarity=0.325 Sum_probs=226.3
Q ss_pred eeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117 24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (346)
Q Consensus 24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 102 (346)
+....+..|+++|.++.|+- +|++.++++.|. |++|+...+..++++.. |+.+|...+.. .|+. .++
T Consensus 8 kr~~~l~~~qgaV~avryN~----dGnY~ltcGsdrtvrLWNp~rg~liktYsg-----hG~EVlD~~~s--~Dns-kf~ 75 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNV----DGNYCLTCGSDRTVRLWNPLRGALIKTYSG-----HGHEVLDAALS--SDNS-KFA 75 (307)
T ss_pred hhceeecccccceEEEEEcc----CCCEEEEcCCCceEEeecccccceeeeecC-----CCceeeecccc--cccc-ccc
Confidence 34556789999999999998 899999999999 99999999999888875 77888877776 5666 899
Q ss_pred EeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC--CeeEEEecccCCCCcceEEE
Q 019117 103 AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT--GICILIFAGAGGHRNEVLSV 180 (346)
Q Consensus 103 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~v~~~ 180 (346)
+|+.|..+.+||+++|+..+.+.+|.+.|+.++|+. +...+++|+.|.++++||.++ .++++.+. .....|.++
T Consensus 76 s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQild---ea~D~V~Si 151 (307)
T KOG0316|consen 76 SCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILD---EAKDGVSSI 151 (307)
T ss_pred cCCCCceEEEEEcccCeeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhh---hhcCceeEE
Confidence 999999999999999999999999999999999999 889999999999999999975 46777777 577889999
Q ss_pred EecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEee
Q 019117 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV 258 (346)
Q Consensus 181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~ 258 (346)
... +..|++|+.||+++.||++.+.. ....-..+|+|+.|+ ++..+.++.
T Consensus 152 ~v~---~heIvaGS~DGtvRtydiR~G~l-------------------------~sDy~g~pit~vs~s~d~nc~La~~l 203 (307)
T KOG0316|consen 152 DVA---EHEIVAGSVDGTVRTYDIRKGTL-------------------------SSDYFGHPITSVSFSKDGNCSLASSL 203 (307)
T ss_pred Eec---ccEEEeeccCCcEEEEEeeccee-------------------------ehhhcCCcceeEEecCCCCEEEEeec
Confidence 885 46799999999999999998432 222345678999998 899999999
Q ss_pred cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeee--EE
Q 019117 259 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICF--SL 336 (346)
Q Consensus 259 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~ 336 (346)
|+++++.|-.+++ ++..+++|...-..+..+-......+++|++||.|++||+.....+......+. +.
T Consensus 204 ~stlrLlDk~tGk---------lL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~ 274 (307)
T KOG0316|consen 204 DSTLRLLDKETGK---------LLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVT 274 (307)
T ss_pred cceeeecccchhH---------HHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEE
Confidence 9999999999988 899999998766555444443336899999999999999999987777666654 46
Q ss_pred EEEecCC
Q 019117 337 HVKYNPQ 343 (346)
Q Consensus 337 ~~~~spd 343 (346)
++.+.|.
T Consensus 275 dl~~hp~ 281 (307)
T KOG0316|consen 275 DLSCHPT 281 (307)
T ss_pred eeecccC
Confidence 6777774
No 23
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=8.6e-40 Score=248.20 Aligned_cols=236 Identities=23% Similarity=0.362 Sum_probs=208.7
Q ss_pred cCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCe
Q 019117 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI 109 (346)
Q Consensus 31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 109 (346)
...+.|+|+.+. ...+++|..|+ |+|||..+..+...+.+ |.+.|.|+.+. .+ .+++|+.|.+
T Consensus 195 e~skgVYClQYD------D~kiVSGlrDnTikiWD~n~~~c~~~L~G-----HtGSVLCLqyd----~r-viisGSSDsT 258 (499)
T KOG0281|consen 195 ENSKGVYCLQYD------DEKIVSGLRDNTIKIWDKNSLECLKILTG-----HTGSVLCLQYD----ER-VIVSGSSDST 258 (499)
T ss_pred ccCCceEEEEec------chhhhcccccCceEEeccccHHHHHhhhc-----CCCcEEeeecc----ce-EEEecCCCce
Confidence 345789999984 47899999998 99999888888887765 77888777664 45 9999999999
Q ss_pred EEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcE
Q 019117 110 IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR 189 (346)
Q Consensus 110 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 189 (346)
|++||+++++++.++-+|...|..+.|+. .++++++.|.++.+||+.....+.......+|...|+.+.|+ .++
T Consensus 259 vrvWDv~tge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~ky 332 (499)
T KOG0281|consen 259 VRVWDVNTGEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKY 332 (499)
T ss_pred EEEEeccCCchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cce
Confidence 99999999999999999999999999975 799999999999999998766444333334899999999996 359
Q ss_pred EEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCC
Q 019117 190 IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKM 269 (346)
Q Consensus 190 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~ 269 (346)
+++++.|.+|++|++.+ ...+.++.+|...|.|+.+.++++++|+.|.+|++||+..
T Consensus 333 IVsASgDRTikvW~~st-----------------------~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~ 389 (499)
T KOG0281|consen 333 IVSASGDRTIKVWSTST-----------------------CEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC 389 (499)
T ss_pred EEEecCCceEEEEeccc-----------------------eeeehhhhcccccceehhccCeEEEecCCCceEEEEeccc
Confidence 99999999999999999 5678899999999999999999999999999999999999
Q ss_pred CCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 270 KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
+. +++.+.+|+.-|.++.|.. +.+++|+.||+|++||+..+.
T Consensus 390 G~---------cLRvLeGHEeLvRciRFd~----krIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 390 GA---------CLRVLEGHEELVRCIRFDN----KRIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred cH---------HHHHHhchHHhhhheeecC----ceeeeccccceEEEEeccccc
Confidence 87 8999999999999999975 469999999999999998865
No 24
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-38 Score=240.94 Aligned_cols=250 Identities=20% Similarity=0.325 Sum_probs=226.4
Q ss_pred cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEecc-CceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE-GGVIAALQSYVDEDKEESFYTVSWACNVDGI 98 (346)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (346)
...++...|+||.+.|.+|+|+. .|+++|+++.|- +.+||..+ -++++.+.+ |...|.+++|. |.|.
T Consensus 138 ~tg~~e~~LrGHt~sv~di~~~a----~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~g-----h~h~vS~V~f~--P~gd 206 (406)
T KOG0295|consen 138 ETGELERSLRGHTDSVFDISFDA----SGKYLATCSSDLSAKLWDFDTFFRCIKSLIG-----HEHGVSSVFFL--PLGD 206 (406)
T ss_pred cchhhhhhhhccccceeEEEEec----CccEEEecCCccchhheeHHHHHHHHHHhcC-----cccceeeEEEE--ecCC
Confidence 34556788899999999999998 789999999998 99999876 344444443 77788888888 7787
Q ss_pred cEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceE
Q 019117 99 PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 178 (346)
Q Consensus 99 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 178 (346)
++++++.|.+|+.|++.++-++.++.+|...|..++.+. ++.++++++.|.+|++|-+.++++...++ .|+-+|.
T Consensus 207 -~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR---~hEh~vE 281 (406)
T KOG0295|consen 207 -HILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELR---EHEHPVE 281 (406)
T ss_pred -eeeecccccceeEEecccceeEEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEeccchhhhhhh---ccccceE
Confidence 999999999999999999999999999999999999999 99999999999999999999999988998 7999999
Q ss_pred EEEecCC--------------CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE
Q 019117 179 SVDFHPS--------------DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD 244 (346)
Q Consensus 179 ~~~~~~~--------------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (346)
+++|.|. ++.++.+++.|++|++||+.. +..+.++.+|.++|.
T Consensus 282 ci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t-----------------------g~cL~tL~ghdnwVr 338 (406)
T KOG0295|consen 282 CIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST-----------------------GMCLFTLVGHDNWVR 338 (406)
T ss_pred EEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC-----------------------CeEEEEEecccceee
Confidence 9999772 235899999999999999999 678999999999999
Q ss_pred EEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117 245 CNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 320 (346)
Q Consensus 245 ~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~ 320 (346)
.++|+ |+||+++..|+++++||+++.+ ++..+..|..-+++++|..+. .++++|+-|..+++|..
T Consensus 339 ~~af~p~Gkyi~ScaDDktlrvwdl~~~~---------cmk~~~ah~hfvt~lDfh~~~--p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 339 GVAFSPGGKYILSCADDKTLRVWDLKNLQ---------CMKTLEAHEHFVTSLDFHKTA--PYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeEEcCCCeEEEEEecCCcEEEEEeccce---------eeeccCCCcceeEEEecCCCC--ceEEeccccceeeeeec
Confidence 99999 9999999999999999999987 788888999999999999998 79999999999999974
No 25
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.5e-39 Score=245.73 Aligned_cols=255 Identities=18% Similarity=0.373 Sum_probs=223.5
Q ss_pred ccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117 20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI 98 (346)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (346)
...+.+...|.||++.|.|+.|.. +++++|+.|. |++||..++++++.+-. |.+.|..+.|+ +|
T Consensus 224 ~n~~~c~~~L~GHtGSVLCLqyd~------rviisGSSDsTvrvWDv~tge~l~tlih-----HceaVLhlrf~---ng- 288 (499)
T KOG0281|consen 224 KNSLECLKILTGHTGSVLCLQYDE------RVIVSGSSDSTVRVWDVNTGEPLNTLIH-----HCEAVLHLRFS---NG- 288 (499)
T ss_pred cccHHHHHhhhcCCCcEEeeeccc------eEEEecCCCceEEEEeccCCchhhHHhh-----hcceeEEEEEe---CC-
Confidence 455778888999999999999964 7999999998 99999999999888764 77888888875 22
Q ss_pred cEEEEeecCCeEEEEEccCcc---eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCc
Q 019117 99 PFLVAGGINGIIRVIDVSNEK---LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN 175 (346)
Q Consensus 99 ~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 175 (346)
++++++.|.++.+||+.... +.+.+.+|...|+.+.|+. +++++++.|.+|++|++.+++.++++. +|..
T Consensus 289 -~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl~---gHkR 361 (499)
T KOG0281|consen 289 -YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTLN---GHKR 361 (499)
T ss_pred -EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhhh---cccc
Confidence 89999999999999998764 4467789999999999964 699999999999999999999999999 8999
Q ss_pred ceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEE
Q 019117 176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILS 255 (346)
Q Consensus 176 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~ 255 (346)
.|-|+.+ .++++++|+.|.+|++||+.. +..+..+++|+.-|.|+.|+.+.+++
T Consensus 362 GIAClQY---r~rlvVSGSSDntIRlwdi~~-----------------------G~cLRvLeGHEeLvRciRFd~krIVS 415 (499)
T KOG0281|consen 362 GIACLQY---RDRLVVSGSSDNTIRLWDIEC-----------------------GACLRVLEGHEELVRCIRFDNKRIVS 415 (499)
T ss_pred cceehhc---cCeEEEecCCCceEEEEeccc-----------------------cHHHHHHhchHHhhhheeecCceeee
Confidence 9999886 578999999999999999998 66788999999999999999999999
Q ss_pred EeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcc
Q 019117 256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV 326 (346)
Q Consensus 256 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 326 (346)
|+.||+|++||+.+..........-++..+..|.+.|..+.|.. ..+++++.|.+|.|||+.++.+-
T Consensus 416 GaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~----fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 416 GAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE----FQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc----eEEEeccCCCeEEEEEcCCCCcc
Confidence 99999999999998875544444446777888999999999864 46899999999999999988654
No 26
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.4e-37 Score=261.41 Aligned_cols=277 Identities=21% Similarity=0.372 Sum_probs=226.6
Q ss_pred ccceeeeeecccC-CCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc--eeeeEeeeecCCCccceEEEEEEEcC
Q 019117 20 KREYRVTNKLQEG-KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG--VIAALQSYVDEDKEESFYTVSWACNV 95 (346)
Q Consensus 20 ~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~ 95 (346)
...+.+...+.+| ...|.++.|+| +|..+++++.++ +++|+..... ....+ ..|...|..++|+ |
T Consensus 145 ~~~~~~~~~~~~~~~~sv~~~~fs~----~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-----~~h~~~v~~~~fs--~ 213 (456)
T KOG0266|consen 145 SRVFSLEQTLAGHECPSVTCVDFSP----DGRALAAASSDGLIRIWKLEGIKSNLLREL-----SGHTRGVSDVAFS--P 213 (456)
T ss_pred cccceeeeeecccccCceEEEEEcC----CCCeEEEccCCCcEEEeecccccchhhccc-----cccccceeeeEEC--C
Confidence 3445555556555 78999999999 789999998888 9999986655 33333 3488889888887 9
Q ss_pred CCCcEEEEeecCCeEEEEEc-cCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC
Q 019117 96 DGIPFLVAGGINGIIRVIDV-SNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR 174 (346)
Q Consensus 96 ~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 174 (346)
+++ ++++++.|++|+|||+ ..+..++++++|...|++++|+| .++++++|+.|++|++||+++++++..+. +|.
T Consensus 214 d~~-~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~---~hs 288 (456)
T KOG0266|consen 214 DGS-YLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLK---GHS 288 (456)
T ss_pred CCc-EEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeee---ccC
Confidence 999 9999999999999999 55689999999999999999999 66999999999999999999999999999 899
Q ss_pred cceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccc--eEEEEec--C
Q 019117 175 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY--VDCNRWL--G 250 (346)
Q Consensus 175 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~--~ 250 (346)
..|++++|++ ++.+|++++.|+.|++||+.+.... ....+..+... ++++.|+ +
T Consensus 289 ~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~---------------------~~~~~~~~~~~~~~~~~~fsp~~ 346 (456)
T KOG0266|consen 289 DGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKL---------------------CLKLLSGAENSAPVTSVQFSPNG 346 (456)
T ss_pred CceEEEEECC-CCCEEEEcCCCccEEEEECCCCcee---------------------eeecccCCCCCCceeEEEECCCC
Confidence 9999999998 9999999999999999999984321 23344444444 8899998 8
Q ss_pred CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcC---eeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce
Q 019117 251 DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD---IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL 327 (346)
Q Consensus 251 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 327 (346)
.+++++..|+.+++||+.... .+..+.+|... +.+..+++.+ .++++|+.|+.|++||+.++..+.
T Consensus 347 ~~ll~~~~d~~~~~w~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~--~~i~sg~~d~~v~~~~~~s~~~~~ 415 (456)
T KOG0266|consen 347 KYLLSASLDRTLKLWDLRSGK---------SVGTYTGHSNLVRCIFSPTLSTGG--KLIYSGSEDGSVYVWDSSSGGILQ 415 (456)
T ss_pred cEEEEecCCCeEEEEEccCCc---------ceeeecccCCcceeEecccccCCC--CeEEEEeCCceEEEEeCCccchhh
Confidence 899999999999999999876 56666666553 3344455666 799999999999999999977665
Q ss_pred eeeee--eeEEEEEecCCCC
Q 019117 328 IARLI--CFSLHVKYNPQSV 345 (346)
Q Consensus 328 ~~~~~--~~~~~~~~spdg~ 345 (346)
..... ..+..+.|+|..+
T Consensus 416 ~l~~h~~~~~~~~~~~~~~~ 435 (456)
T KOG0266|consen 416 RLEGHSKAAVSDLSSHPTEN 435 (456)
T ss_pred hhcCCCCCceeccccCCCcC
Confidence 44433 4456677777654
No 27
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-36 Score=242.51 Aligned_cols=297 Identities=18% Similarity=0.274 Sum_probs=235.1
Q ss_pred ccccCcceeeeccccccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCC
Q 019117 3 RTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDED 81 (346)
Q Consensus 3 ~~a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~ 81 (346)
|.++|+......+.. -++|+...+++.|..-|+|+.|+| ||.+||+++.|+ +.+||=.+++.+..+.. ...
T Consensus 162 Ri~T~sdDn~v~ffe--GPPFKFk~s~r~HskFV~~VRysP----DG~~Fat~gsDgki~iyDGktge~vg~l~~--~~a 233 (603)
T KOG0318|consen 162 RIATGSDDNTVAFFE--GPPFKFKSSFREHSKFVNCVRYSP----DGSRFATAGSDGKIYIYDGKTGEKVGELED--SDA 233 (603)
T ss_pred EEEeccCCCeEEEee--CCCeeeeecccccccceeeEEECC----CCCeEEEecCCccEEEEcCCCccEEEEecC--CCC
Confidence 566777777766664 566777788899999999999999 899999999999 99999999999888875 456
Q ss_pred CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcce-----------------------------------------
Q 019117 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL----------------------------------------- 120 (346)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------------------------------------- 120 (346)
|.+.|++++|+ ||++ .+++++.|.+++|||+.+.++
T Consensus 234 HkGsIfalsWs--PDs~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~ 310 (603)
T KOG0318|consen 234 HKGSIFALSWS--PDST-QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDP 310 (603)
T ss_pred ccccEEEEEEC--CCCc-eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCC
Confidence 99999999998 9999 999999999999999866432
Q ss_pred --eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEe-----------cccC----------------
Q 019117 121 --HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF-----------AGAG---------------- 171 (346)
Q Consensus 121 --~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-----------~~~~---------------- 171 (346)
.+.+.+|...|+++..+| ++.+|++|+.||.|.-|+..++..-+.. ....
T Consensus 311 ~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~ 389 (603)
T KOG0318|consen 311 SVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVI 389 (603)
T ss_pred ChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEE
Confidence 344567999999999999 7899999999999999998765332211 0000
Q ss_pred ---------------------------------------------------CCCcceEEEEecCCCCcEEEEEecCCeEE
Q 019117 172 ---------------------------------------------------GHRNEVLSVDFHPSDIYRIASCGMDNTVK 200 (346)
Q Consensus 172 ---------------------------------------------------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 200 (346)
.-.....+++++| ++..++.|+.|+.|+
T Consensus 390 ~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgkvh 468 (603)
T KOG0318|consen 390 SLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP-DGSEVAVGGQDGKVH 468 (603)
T ss_pred ecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC-CCCEEEEecccceEE
Confidence 1112345677777 777888888888888
Q ss_pred EEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCcc
Q 019117 201 IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGT 278 (346)
Q Consensus 201 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 278 (346)
+|.+.... .........|...|++++|+ +.+|+++...+.+.+||..+.+.
T Consensus 469 vysl~g~~---------------------l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~------ 521 (603)
T KOG0318|consen 469 VYSLSGDE---------------------LKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV------ 521 (603)
T ss_pred EEEecCCc---------------------ccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce------
Confidence 88877622 12334567799999999999 88999999999999999998763
Q ss_pred ccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce--eeeeeeeEEEEEecCC
Q 019117 279 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL--IARLICFSLHVKYNPQ 343 (346)
Q Consensus 279 ~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~spd 343 (346)
....+..|...|.+++|+|+. .++|+|+.|-.|.||+++.-.... .-.+...++.+.|--+
T Consensus 522 --~~~~w~FHtakI~~~aWsP~n--~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde 584 (603)
T KOG0318|consen 522 --KTNRWAFHTAKINCVAWSPNN--KLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDE 584 (603)
T ss_pred --ecceeeeeeeeEEEEEeCCCc--eEEEeccccceEEEEEccChhhheEeccccccCceeEEEecC
Confidence 455666799999999999999 799999999999999998744322 1223344888888543
No 28
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.7e-38 Score=261.93 Aligned_cols=207 Identities=22% Similarity=0.380 Sum_probs=193.2
Q ss_pred eeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE
Q 019117 25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (346)
Q Consensus 25 ~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 103 (346)
...++.||.++|+.+.|+| +.++|+++++|. |++|.+.+...+...++ |..+|+.+.|+ |.|- |+|+
T Consensus 443 ~~~~L~GH~GPVyg~sFsP----d~rfLlScSED~svRLWsl~t~s~~V~y~G-----H~~PVwdV~F~--P~Gy-YFat 510 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSP----DRRFLLSCSEDSSVRLWSLDTWSCLVIYKG-----HLAPVWDVQFA--PRGY-YFAT 510 (707)
T ss_pred eeEEeecCCCceeeeeecc----cccceeeccCCcceeeeecccceeEEEecC-----CCcceeeEEec--CCce-EEEe
Confidence 4455899999999999999 779999999998 99999999888777764 78889999987 8898 9999
Q ss_pred eecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEec
Q 019117 104 GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 183 (346)
Q Consensus 104 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 183 (346)
++.|++-++|......+.+.+.+|.+.|.|+.|+| +..++++||.|.+|++||+.+|..++.|. ||.++|.+++|+
T Consensus 511 as~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~---GH~~~V~al~~S 586 (707)
T KOG0263|consen 511 ASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFT---GHKGPVTALAFS 586 (707)
T ss_pred cCCCceeeeeecccCCchhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEec---CCCCceEEEEEc
Confidence 99999999999999999999999999999999999 99999999999999999999999999998 899999999999
Q ss_pred CCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCe
Q 019117 184 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNE 261 (346)
Q Consensus 184 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~ 261 (346)
| +|.+|++|+.||.|.+||+.. +..+..+.+|.+.|.++.|+ |..|++|+.|++
T Consensus 587 p-~Gr~LaSg~ed~~I~iWDl~~-----------------------~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns 642 (707)
T KOG0263|consen 587 P-CGRYLASGDEDGLIKIWDLAN-----------------------GSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNS 642 (707)
T ss_pred C-CCceEeecccCCcEEEEEcCC-----------------------CcchhhhhcccCceeEEEEecCCCEEEecCCCCe
Confidence 9 999999999999999999999 55677889999999999999 999999999999
Q ss_pred EEEEcCCCCC
Q 019117 262 IVLWEPKMKE 271 (346)
Q Consensus 262 i~iwd~~~~~ 271 (346)
|++||+....
T Consensus 643 V~lWD~~~~~ 652 (707)
T KOG0263|consen 643 VRLWDLTKVI 652 (707)
T ss_pred EEEEEchhhc
Confidence 9999987643
No 29
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.4e-36 Score=275.22 Aligned_cols=277 Identities=22% Similarity=0.326 Sum_probs=222.4
Q ss_pred cccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccC----ceee-eEeeeecCCCccceEEEEEEEcCC-CCcEE
Q 019117 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG----GVIA-ALQSYVDEDKEESFYTVSWACNVD-GIPFL 101 (346)
Q Consensus 29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~----~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l 101 (346)
+..|.+.|.+++|+| ++++||+|+.|+ |+||+.... .... ..... .+...+.+++|. +. +. +|
T Consensus 479 ~~~~~~~V~~i~fs~----dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~---~~~~~v~~l~~~--~~~~~-~l 548 (793)
T PLN00181 479 LLNSSNLVCAIGFDR----DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL---ASRSKLSGICWN--SYIKS-QV 548 (793)
T ss_pred ccCCCCcEEEEEECC----CCCEEEEEeCCCEEEEEECCcccccccccccceEEe---cccCceeeEEec--cCCCC-EE
Confidence 445899999999999 789999999998 999997532 1100 01111 134567777776 43 45 99
Q ss_pred EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117 102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 181 (346)
Q Consensus 102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 181 (346)
++++.||+|++||+.+++.+..+.+|.+.|++++|+|.++.+|++|+.|++|++||++++..+..+. +...+.++.
T Consensus 549 as~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~----~~~~v~~v~ 624 (793)
T PLN00181 549 ASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK----TKANICCVQ 624 (793)
T ss_pred EEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe----cCCCeEEEE
Confidence 9999999999999999999999999999999999997578899999999999999999999888886 446899999
Q ss_pred ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecC
Q 019117 182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDN 260 (346)
Q Consensus 182 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~ 260 (346)
|++.++.++++|+.||.|++||++... .+...+..|...|.++.|. +.+|++++.|+
T Consensus 625 ~~~~~g~~latgs~dg~I~iwD~~~~~----------------------~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~ 682 (793)
T PLN00181 625 FPSESGRSLAFGSADHKVYYYDLRNPK----------------------LPLCTMIGHSKTVSYVRFVDSSTLVSSSTDN 682 (793)
T ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCC----------------------ccceEecCCCCCEEEEEEeCCCEEEEEECCC
Confidence 976578999999999999999998721 2345667899999999997 88999999999
Q ss_pred eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee----------
Q 019117 261 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR---------- 330 (346)
Q Consensus 261 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------- 330 (346)
+|++||+...... .....+..+.+|...+..++|+|++ .+|++|+.|+.|++|+.....+...+.
T Consensus 683 ~ikiWd~~~~~~~---~~~~~l~~~~gh~~~i~~v~~s~~~--~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~ 757 (793)
T PLN00181 683 TLKLWDLSMSISG---INETPLHSFMGHTNVKNFVGLSVSD--GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGL 757 (793)
T ss_pred EEEEEeCCCCccc---cCCcceEEEcCCCCCeeEEEEcCCC--CEEEEEeCCCEEEEEECCCCCceEEEecccCCccccc
Confidence 9999999754210 0122567788899999999999998 799999999999999987665433221
Q ss_pred ----eeeeEEEEEecCCCCC
Q 019117 331 ----LICFSLHVKYNPQSVY 346 (346)
Q Consensus 331 ----~~~~~~~~~~spdg~~ 346 (346)
....+.+++|+|+|.+
T Consensus 758 ~~~~~~~~V~~v~ws~~~~~ 777 (793)
T PLN00181 758 EVDDASQFISSVCWRGQSST 777 (793)
T ss_pred ccCCCCcEEEEEEEcCCCCe
Confidence 1234889999999863
No 30
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-36 Score=251.83 Aligned_cols=277 Identities=16% Similarity=0.253 Sum_probs=233.2
Q ss_pred ccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCC--cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCC
Q 019117 20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGN--RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDG 97 (346)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~--~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 97 (346)
.+.+.+++.+.-...+|..++|+. .|+++|.|+.. .+.||++....-+...++ |-..+.+++++ |||
T Consensus 294 lP~f~lih~LSis~~~I~t~~~N~----tGDWiA~g~~klgQLlVweWqsEsYVlKQQg-----H~~~i~~l~YS--pDg 362 (893)
T KOG0291|consen 294 LPDFNLIHSLSISDQKILTVSFNS----TGDWIAFGCSKLGQLLVWEWQSESYVLKQQG-----HSDRITSLAYS--PDG 362 (893)
T ss_pred cCCceEEEEeecccceeeEEEecc----cCCEEEEcCCccceEEEEEeeccceeeeccc-----cccceeeEEEC--CCC
Confidence 467888888887888999999998 78999999987 499999998877666664 66677777666 999
Q ss_pred CcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcce
Q 019117 98 IPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV 177 (346)
Q Consensus 98 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 177 (346)
+ ++|+|+.||.|+|||..++-+..++..|+..|+.+.|+. .++.+++.+-||+|+.||+...+.-+++.. ..+-..
T Consensus 363 q-~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~--P~p~Qf 438 (893)
T KOG0291|consen 363 Q-LIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTS--PEPIQF 438 (893)
T ss_pred c-EEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecC--CCceee
Confidence 9 999999999999999999999999999999999999999 899999999999999999999999999974 234566
Q ss_pred EEEEecCCCCcEEEEEecCCe-EEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEE
Q 019117 178 LSVDFHPSDIYRIASCGMDNT-VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL 254 (346)
Q Consensus 178 ~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~ 254 (346)
.|++..| .+.+++.|+.|.. |.+|++.+ ++.+-.+.+|+++|.+++|+ ++.|+
T Consensus 439 scvavD~-sGelV~AG~~d~F~IfvWS~qT-----------------------GqllDiLsGHEgPVs~l~f~~~~~~La 494 (893)
T KOG0291|consen 439 SCVAVDP-SGELVCAGAQDSFEIFVWSVQT-----------------------GQLLDILSGHEGPVSGLSFSPDGSLLA 494 (893)
T ss_pred eEEEEcC-CCCEEEeeccceEEEEEEEeec-----------------------CeeeehhcCCCCcceeeEEccccCeEE
Confidence 7899998 8999999998874 99999999 45677899999999999998 89999
Q ss_pred EEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee----
Q 019117 255 SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR---- 330 (346)
Q Consensus 255 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---- 330 (346)
++++|.+||+||+-.... .+.++. +...+..++|.||| +.|++++.||.|.+||.+.+..+..+.
T Consensus 495 S~SWDkTVRiW~if~s~~--------~vEtl~-i~sdvl~vsfrPdG--~elaVaTldgqItf~d~~~~~q~~~IdgrkD 563 (893)
T KOG0291|consen 495 SGSWDKTVRIWDIFSSSG--------TVETLE-IRSDVLAVSFRPDG--KELAVATLDGQITFFDIKEAVQVGSIDGRKD 563 (893)
T ss_pred eccccceEEEEEeeccCc--------eeeeEe-eccceeEEEEcCCC--CeEEEEEecceEEEEEhhhceeeccccchhh
Confidence 999999999999977631 222222 34589999999999 689999999999999998765331111
Q ss_pred e-----------------eeeEEEEEecCCCCC
Q 019117 331 L-----------------ICFSLHVKYNPQSVY 346 (346)
Q Consensus 331 ~-----------------~~~~~~~~~spdg~~ 346 (346)
+ ....+.+++|+||.+
T Consensus 564 ~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~ 596 (893)
T KOG0291|consen 564 LSGGRKETDRITAENSAKGKTFTTICYSADGKC 596 (893)
T ss_pred ccccccccceeehhhcccCCceEEEEEcCCCCE
Confidence 0 112467999999974
No 31
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=9.9e-36 Score=241.84 Aligned_cols=270 Identities=25% Similarity=0.410 Sum_probs=227.0
Q ss_pred eeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117 26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (346)
Q Consensus 26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 104 (346)
..++++|.++|++++|+| ++++|++++.++ +.+|+..++.....+.. +...+..+.|. ++++ +++++
T Consensus 2 ~~~~~~h~~~i~~~~~~~----~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~-----~~~~i~~~~~~--~~~~-~l~~~ 69 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSP----DGKLLATGSGDGTIKVWDLETGELLRTLKG-----HTGPVRDVAAS--ADGT-YLASG 69 (289)
T ss_pred chHhcccCCCEEEEEEcC----CCCEEEEeecCcEEEEEEeeCCCcEEEEec-----CCcceeEEEEC--CCCC-EEEEE
Confidence 356789999999999999 678999999777 99999988775555543 55566566665 8887 99999
Q ss_pred ecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecC
Q 019117 105 GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP 184 (346)
Q Consensus 105 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 184 (346)
+.+|.|++|++.+++.+..+..|...+.++.|++ ++.++++++.|+.|.+||+++++....+. .|...+.+++|+|
T Consensus 70 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~i~~~~~~~ 145 (289)
T cd00200 70 SSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLR---GHTDWVNSVAFSP 145 (289)
T ss_pred cCCCeEEEEEcCcccceEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEec---cCCCcEEEEEEcC
Confidence 9999999999999888888889999999999999 67888888889999999999888888887 6889999999998
Q ss_pred CCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeE
Q 019117 185 SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEI 262 (346)
Q Consensus 185 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i 262 (346)
++.++++++.|+.|++||++. ......+..|...+.++.|+ ++.+++++.|+.|
T Consensus 146 -~~~~l~~~~~~~~i~i~d~~~-----------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 201 (289)
T cd00200 146 -DGTFVASSSQDGTIKLWDLRT-----------------------GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI 201 (289)
T ss_pred -cCCEEEEEcCCCcEEEEEccc-----------------------cccceeEecCccccceEEECCCcCEEEEecCCCcE
Confidence 788888888899999999986 33455666788899999998 5589999999999
Q ss_pred EEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee-eeeeEEEEEec
Q 019117 263 VLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR-LICFSLHVKYN 341 (346)
Q Consensus 263 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~s 341 (346)
++||++..+ .+..+..|...+.+++|+|++ .++++++.||.|++||+.++++..... ....+.+++|+
T Consensus 202 ~i~d~~~~~---------~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~ 270 (289)
T cd00200 202 KLWDLSTGK---------CLGTLRGHENGVNSVAFSPDG--YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS 270 (289)
T ss_pred EEEECCCCc---------eecchhhcCCceEEEEEcCCC--cEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEEC
Confidence 999998765 556666777899999999996 688888889999999999877655443 33458899999
Q ss_pred CCCCC
Q 019117 342 PQSVY 346 (346)
Q Consensus 342 pdg~~ 346 (346)
|++++
T Consensus 271 ~~~~~ 275 (289)
T cd00200 271 PDGKR 275 (289)
T ss_pred CCCCE
Confidence 98763
No 32
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-37 Score=223.90 Aligned_cols=265 Identities=18% Similarity=0.322 Sum_probs=219.7
Q ss_pred eEEEEEEeecCCCccEEEEEc--------CCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117 36 LYAVVFNFIDSRYFNVFATVG--------GNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (346)
Q Consensus 36 v~~~~~~p~~~~~~~~la~~~--------~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 107 (346)
=+++.|||.-. ++||.+. .+.+.|.+....+.+..++.+. ..+.+..++|+.+.+ +.+++++.|
T Consensus 11 GysvqfSPf~~---nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d---~~D~LfdV~Wse~~e--~~~~~a~GD 82 (311)
T KOG0277|consen 11 GYSVQFSPFVE---NRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD---TEDGLFDVAWSENHE--NQVIAASGD 82 (311)
T ss_pred cceeEeccccc---chhheeehhhcccccCceEEEEecCCCCCeEEEEeee---cccceeEeeecCCCc--ceEEEEecC
Confidence 46889999542 3333332 2338999987777777777664 567889999995444 478899999
Q ss_pred CeEEEEEccCc-ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCC
Q 019117 108 GIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD 186 (346)
Q Consensus 108 g~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 186 (346)
|++++||+... .++..++.|...|.++.|++.....+++++.|++|++|+...++.+.++. +|...|...+|+|..
T Consensus 83 GSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~---gh~~~Iy~a~~sp~~ 159 (311)
T KOG0277|consen 83 GSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN---GHNSCIYQAAFSPHI 159 (311)
T ss_pred ceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec---CCccEEEEEecCCCC
Confidence 99999996443 57889999999999999999888899999999999999999999999999 899999999999999
Q ss_pred CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEeecCeEE
Q 019117 187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIV 263 (346)
Q Consensus 187 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~ 263 (346)
.+++++++.|+.+++||++.. .....+..|...|.|+.|+ .+.++||+.|+.|+
T Consensus 160 ~nlfas~Sgd~~l~lwdvr~~-----------------------gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr 216 (311)
T KOG0277|consen 160 PNLFASASGDGTLRLWDVRSP-----------------------GKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVR 216 (311)
T ss_pred CCeEEEccCCceEEEEEecCC-----------------------CceeEEEeccceeEeecccccCCcEEEecCCCceEE
Confidence 999999999999999999982 2233488899999999998 77999999999999
Q ss_pred EEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCc-cee-eeeeeeEEEEEec
Q 019117 264 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP-VLI-ARLICFSLHVKYN 341 (346)
Q Consensus 264 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~-~~~~~~~~~~~~s 341 (346)
.||++..+. ++..+.+|.-.|..++|||... .+|++++.|-+++|||...+.- +.. ..+...+..+.||
T Consensus 217 ~wDir~~r~--------pl~eL~gh~~AVRkvk~Sph~~-~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws 287 (311)
T KOG0277|consen 217 GWDIRNLRT--------PLFELNGHGLAVRKVKFSPHHA-SLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWS 287 (311)
T ss_pred EEehhhccc--------cceeecCCceEEEEEecCcchh-hHhhhccccceEEecccccchhhhhhhhccceEEeccccc
Confidence 999998763 7888899999999999999876 7999999999999999986543 223 3445567778887
Q ss_pred CC
Q 019117 342 PQ 343 (346)
Q Consensus 342 pd 343 (346)
+-
T Consensus 288 ~~ 289 (311)
T KOG0277|consen 288 LF 289 (311)
T ss_pred cc
Confidence 63
No 33
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-37 Score=258.62 Aligned_cols=292 Identities=17% Similarity=0.249 Sum_probs=243.5
Q ss_pred ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec
Q 019117 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI 106 (346)
Q Consensus 28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 106 (346)
.|.....+|..++|+| ...++.++--.+ |.+||..-+..+..+.. |+++|..++|. |.+. ++++|+.
T Consensus 4 kfEskSsRvKglsFHP----~rPwILtslHsG~IQlWDYRM~tli~rFde-----HdGpVRgv~FH--~~qp-lFVSGGD 71 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHP----KRPWILTSLHSGVIQLWDYRMGTLIDRFDE-----HDGPVRGVDFH--PTQP-LFVSGGD 71 (1202)
T ss_pred hhhcccccccceecCC----CCCEEEEeecCceeeeehhhhhhHHhhhhc-----cCCccceeeec--CCCC-eEEecCC
Confidence 3455678899999999 556888887777 99999999888887764 88899888876 8887 9999999
Q ss_pred CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCC
Q 019117 107 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD 186 (346)
Q Consensus 107 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 186 (346)
|-.|++|+..+.+++.++.+|-+.|..+.|++ .-.+++++|+|.+|+||++.+++++..+. +|...|.|..|+| .
T Consensus 72 DykIkVWnYk~rrclftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavlt---GHnHYVMcAqFhp-t 146 (1202)
T KOG0292|consen 72 DYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLT---GHNHYVMCAQFHP-T 146 (1202)
T ss_pred ccEEEEEecccceehhhhccccceeEEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEe---cCceEEEeeccCC-c
Confidence 99999999999999999999999999999999 88999999999999999999999999999 8999999999999 8
Q ss_pred CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCC------CCCccceeceEEEeecccceEEEEecC--CEEEEEee
Q 019117 187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK------FPTKYVQFPVFIASVHSNYVDCNRWLG--DFILSKSV 258 (346)
Q Consensus 187 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~ 258 (346)
..++++++-|.+|++||+...+.....+......... ..........+.+.+|...|.-++|++ -++++|+.
T Consensus 147 EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~D 226 (1202)
T KOG0292|consen 147 EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGAD 226 (1202)
T ss_pred cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCC
Confidence 8999999999999999998855433332221111111 111112233467889999999999996 68999999
Q ss_pred cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee-eeEEE
Q 019117 259 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI-CFSLH 337 (346)
Q Consensus 259 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~ 337 (346)
|..|++|.++..+. -.+.+..+|.+.|.++-|+|.. .++++.|+|++|+|||+...+.++.++.. ..-+.
T Consensus 227 DRqVKlWrmnetKa-------WEvDtcrgH~nnVssvlfhp~q--~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~ 297 (1202)
T KOG0292|consen 227 DRQVKLWRMNETKA-------WEVDTCRGHYNNVSSVLFHPHQ--DLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWI 297 (1202)
T ss_pred cceeeEEEeccccc-------eeehhhhcccCCcceEEecCcc--ceeEecCCCccEEEEecccccceeeeeccCCeEEE
Confidence 99999999987652 2467788999999999999988 79999999999999999998888877543 44677
Q ss_pred EEecCCCC
Q 019117 338 VKYNPQSV 345 (346)
Q Consensus 338 ~~~spdg~ 345 (346)
++-.|...
T Consensus 298 laahP~lN 305 (1202)
T KOG0292|consen 298 LAAHPELN 305 (1202)
T ss_pred EEecCCcc
Confidence 77777654
No 34
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-37 Score=225.36 Aligned_cols=256 Identities=19% Similarity=0.360 Sum_probs=213.5
Q ss_pred cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (346)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (346)
+.......+. -.+.+++|+|++. ..+.++++++|| ++|||+. .....+..+ .+|..+|.++.|. +..+.
T Consensus 49 ~gi~e~~s~d-~~D~LfdV~Wse~---~e~~~~~a~GDGSLrl~d~~--~~s~Pi~~~--kEH~~EV~Svdwn--~~~r~ 118 (311)
T KOG0277|consen 49 KGIQECQSYD-TEDGLFDVAWSEN---HENQVIAASGDGSLRLFDLT--MPSKPIHKF--KEHKREVYSVDWN--TVRRR 118 (311)
T ss_pred CCeEEEEeee-cccceeEeeecCC---CcceEEEEecCceEEEeccC--CCCcchhHH--HhhhhheEEeccc--cccce
Confidence 3344444432 4577999999983 456777777777 9999943 333344333 2488999999998 44444
Q ss_pred EEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEE
Q 019117 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS 179 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 179 (346)
.+++++.|++|++|+...++.+.++.+|..-|...+|+|..++++++++.|+++++||++.......+. .|...+.+
T Consensus 119 ~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~---ah~~Eil~ 195 (311)
T KOG0277|consen 119 IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE---AHNSEILC 195 (311)
T ss_pred eEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE---eccceeEe
Confidence 788889999999999999999999999999999999999999999999999999999998654444466 69999999
Q ss_pred EEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEE
Q 019117 180 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSK 256 (346)
Q Consensus 180 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~ 256 (346)
+.|+..+.+.++||+.|+.|+.||+++. ..|+..+.+|.-.|+.+.|+ ...|+++
T Consensus 196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~----------------------r~pl~eL~gh~~AVRkvk~Sph~~~lLaSa 253 (311)
T KOG0277|consen 196 CDWSKYNHNVLATGGVDNLVRGWDIRNL----------------------RTPLFELNGHGLAVRKVKFSPHHASLLASA 253 (311)
T ss_pred ecccccCCcEEEecCCCceEEEEehhhc----------------------cccceeecCCceEEEEEecCcchhhHhhhc
Confidence 9999988999999999999999999994 45788999999999999999 5689999
Q ss_pred eecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117 257 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 320 (346)
Q Consensus 257 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~ 320 (346)
+.|-+++|||...+. ..+.++..|..-+..+.||+-.. .++|+++.|+.++||+-
T Consensus 254 sYDmT~riw~~~~~d--------s~~e~~~~HtEFv~g~Dws~~~~-~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 254 SYDMTVRIWDPERQD--------SAIETVDHHTEFVCGLDWSLFDP-GQVASTGWDELLYVWNP 308 (311)
T ss_pred cccceEEecccccch--------hhhhhhhccceEEeccccccccC-ceeeecccccceeeecc
Confidence 999999999998654 26777888998999999999754 69999999999999984
No 35
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.3e-35 Score=225.12 Aligned_cols=270 Identities=19% Similarity=0.304 Sum_probs=226.0
Q ss_pred eeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117 24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (346)
Q Consensus 24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 102 (346)
..+.+|+.|+++|++++.+| +.+++|||+.|. -.+|+..++.....+.. |++.|.++.|+ .+|. +||
T Consensus 55 dS~~tF~~H~~svFavsl~P----~~~l~aTGGgDD~AflW~~~~ge~~~eltg-----HKDSVt~~~Fs--hdgt-lLA 122 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHP----NNNLVATGGGDDLAFLWDISTGEFAGELTG-----HKDSVTCCSFS--HDGT-LLA 122 (399)
T ss_pred cceeehhhcCCceEEEEeCC----CCceEEecCCCceEEEEEccCCcceeEecC-----CCCceEEEEEc--cCce-EEE
Confidence 34678899999999999999 678999999888 99999999986666554 88899888877 8899 999
Q ss_pred EeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEe
Q 019117 103 AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 182 (346)
Q Consensus 103 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 182 (346)
+|+.+|.|+||+..++.....+...-..+.-+.|+| ....|++|+.||.+.+|.+.++...+.+. +|..++++=.|
T Consensus 123 TGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~---Gh~~~ct~G~f 198 (399)
T KOG0296|consen 123 TGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMS---GHNSPCTCGEF 198 (399)
T ss_pred ecCCCccEEEEEcccCceEEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEec---CCCCCcccccc
Confidence 999999999999999998888876777899999999 99999999999999999999888888888 89999999999
Q ss_pred cCCCCcEEEEEecCCeEEEEEccccceeeeecee------ecC-------------------------------CC---C
Q 019117 183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFT------WTD-------------------------------LP---S 222 (346)
Q Consensus 183 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------~~~-------------------------------~~---~ 222 (346)
.| +|+.++++..||+|++|++.+.+......-. ... .+ .
T Consensus 199 ~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~ 277 (399)
T KOG0296|consen 199 IP-DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPE 277 (399)
T ss_pred cC-CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcc
Confidence 99 8999999999999999999986543332200 000 00 0
Q ss_pred C-------------------CC-------------CccceeceEEEeecccceEEEEecC-CEEEEEeecCeEEEEcCCC
Q 019117 223 K-------------------FP-------------TKYVQFPVFIASVHSNYVDCNRWLG-DFILSKSVDNEIVLWEPKM 269 (346)
Q Consensus 223 ~-------------------~~-------------~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~d~~i~iwd~~~ 269 (346)
. ++ .......++..-.|+..|..+.|.+ .+|++++.+|.|+.||.++
T Consensus 278 l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRt 357 (399)
T KOG0296|consen 278 LKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDART 357 (399)
T ss_pred ccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccc
Confidence 0 00 0000011334456888999999985 8999999999999999999
Q ss_pred CCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117 270 KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (346)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~ 321 (346)
++ ++..+.+|...|.+++++|+. ++++++|.|+..+||++.
T Consensus 358 G~---------l~~~y~GH~~~Il~f~ls~~~--~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 358 GQ---------LKFTYTGHQMGILDFALSPQK--RLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cc---------eEEEEecCchheeEEEEcCCC--cEEEEecCCCeEEEEecC
Confidence 98 899999999999999999998 799999999999999875
No 36
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-36 Score=239.22 Aligned_cols=265 Identities=19% Similarity=0.335 Sum_probs=228.4
Q ss_pred CCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117 33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (346)
Q Consensus 33 ~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 112 (346)
.++|.+++|+|.+| .-+|++++-++.||+..+....+.+..| ...+++++|. .||+ +|++|...|.|+|
T Consensus 26 ~~~vssl~fsp~~P---~d~aVt~S~rvqly~~~~~~~~k~~srF-----k~~v~s~~fR--~DG~-LlaaGD~sG~V~v 94 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHP---YDFAVTSSVRVQLYSSVTRSVRKTFSRF-----KDVVYSVDFR--SDGR-LLAAGDESGHVKV 94 (487)
T ss_pred cCcceeEecCCCCC---CceEEecccEEEEEecchhhhhhhHHhh-----ccceeEEEee--cCCe-EEEccCCcCcEEE
Confidence 46799999999655 5688888888999999888887777764 4567777777 8999 9999999999999
Q ss_pred EEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEE
Q 019117 113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS 192 (346)
Q Consensus 113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 192 (346)
+|+.+...++.+.+|..+|..+.|+|.++..|++|++|+.+++||+.+......+. +|+..|+|.+|+|.++.+++|
T Consensus 95 fD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~---~htDYVR~g~~~~~~~hivvt 171 (487)
T KOG0310|consen 95 FDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS---GHTDYVRCGDISPANDHIVVT 171 (487)
T ss_pred eccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec---CCcceeEeeccccCCCeEEEe
Confidence 99888778899999999999999999889999999999999999999888755676 899999999999977889999
Q ss_pred EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCC
Q 019117 193 CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMK 270 (346)
Q Consensus 193 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~ 270 (346)
|+.||.|++||++.. .....--.|..+|..+.+- |..+++++. ..|++||+-++
T Consensus 172 GsYDg~vrl~DtR~~-----------------------~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G 227 (487)
T KOG0310|consen 172 GSYDGKVRLWDTRSL-----------------------TSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTG 227 (487)
T ss_pred cCCCceEEEEEeccC-----------------------CceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCC
Confidence 999999999999982 1222333588889888886 577777765 57999999976
Q ss_pred CCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCC
Q 019117 271 EQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSV 345 (346)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~ 345 (346)
.+ .+.....|...|+|+++..++ ..|++++-|+.+++||+.+.+.+....+++++.+++.+||++
T Consensus 228 ~q--------ll~~~~~H~KtVTcL~l~s~~--~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~ 292 (487)
T KOG0310|consen 228 GQ--------LLTSMFNHNKTVTCLRLASDS--TRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQ 292 (487)
T ss_pred ce--------ehhhhhcccceEEEEEeecCC--ceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCc
Confidence 53 555556688999999999998 789999999999999999998889999999999999999875
No 37
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.2e-37 Score=242.66 Aligned_cols=271 Identities=14% Similarity=0.240 Sum_probs=218.3
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEecc-CceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE-GGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (346)
-+....+.||+..|+++.|.| ..+.+|++++.|+ |+||++.. +++++.+.. |..+|..++|+ ++|. .
T Consensus 204 kk~~~~~~gH~kgvsai~~fp---~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g-----H~k~Vrd~~~s--~~g~-~ 272 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFP---KKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG-----HRKPVRDASFN--NCGT-S 272 (503)
T ss_pred HhheeeccCCccccchhhhcc---ceeeEEEecCCCceEEEEEEecCcceehhhhc-----chhhhhhhhcc--ccCC-e
Confidence 356778899999999999999 3578999999999 99999987 667777765 77888888887 8898 9
Q ss_pred EEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180 (346)
Q Consensus 101 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 180 (346)
+++++.|+.|++||+++|+++..+. ....++|+.|+|++.+.|++|+.|+.|+.||+++++.++.+. .|-+.|..+
T Consensus 273 fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd---~hLg~i~~i 348 (503)
T KOG0282|consen 273 FLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD---RHLGAILDI 348 (503)
T ss_pred eeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH---hhhhheeee
Confidence 9999999999999999999999887 456789999999766999999999999999999999999998 699999999
Q ss_pred EecCCCCcEEEEEecCCeEEEEEccccceeeee---------ceeecCCCCCCCCccceec--------------eEEEe
Q 019117 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEK---------SFTWTDLPSKFPTKYVQFP--------------VFIAS 237 (346)
Q Consensus 181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~--------------~~~~~ 237 (346)
.|-+ ++..+++.+.|++++||+.+..-..-.. .+.......-+..+..... ...+.
T Consensus 349 ~F~~-~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~fe 427 (503)
T KOG0282|consen 349 TFVD-EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFE 427 (503)
T ss_pred EEcc-CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhc
Confidence 9998 9999999999999999999873211100 0000000000000111111 11223
Q ss_pred ecc--cceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCC
Q 019117 238 VHS--NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG 313 (346)
Q Consensus 238 ~~~--~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg 313 (346)
+|. +.-..+.|+ |.+|++|+.||.+.+||.++-+ .+..++.|.+++..+.|+|... ..+|+|+.||
T Consensus 428 Gh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k---------l~~~lkah~~~ci~v~wHP~e~-Skvat~~w~G 497 (503)
T KOG0282|consen 428 GHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK---------LVSKLKAHDQPCIGVDWHPVEP-SKVATCGWDG 497 (503)
T ss_pred ceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh---------hhhccccCCcceEEEEecCCCc-ceeEecccCc
Confidence 343 334556777 8899999999999999999887 7889999999999999999876 6899999999
Q ss_pred cEEEEE
Q 019117 314 KIFVWE 319 (346)
Q Consensus 314 ~i~iwd 319 (346)
.|++||
T Consensus 498 ~Ikiwd 503 (503)
T KOG0282|consen 498 LIKIWD 503 (503)
T ss_pred eeEecC
Confidence 999996
No 38
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.6e-36 Score=249.58 Aligned_cols=249 Identities=20% Similarity=0.302 Sum_probs=215.3
Q ss_pred ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec
Q 019117 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI 106 (346)
Q Consensus 28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 106 (346)
.+.||.+.|.++.... +|.+|++|+.|. +++|.+.++.... ...-....|...|.+++++ ..+..+|++++.
T Consensus 360 ii~GH~e~vlSL~~~~----~g~llat~sKD~svilWr~~~~~~~~-~~~a~~~gH~~svgava~~--~~~asffvsvS~ 432 (775)
T KOG0319|consen 360 IIPGHTEAVLSLDVWS----SGDLLATGSKDKSVILWRLNNNCSKS-LCVAQANGHTNSVGAVAGS--KLGASFFVSVSQ 432 (775)
T ss_pred EEeCchhheeeeeecc----cCcEEEEecCCceEEEEEecCCcchh-hhhhhhcccccccceeeec--ccCccEEEEecC
Confidence 5689999999999333 578999999999 9999884433221 1112223588899988885 666669999999
Q ss_pred CCeEEEEEccCcce-----e----eeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcce
Q 019117 107 NGIIRVIDVSNEKL-----H----KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV 177 (346)
Q Consensus 107 dg~i~iwd~~~~~~-----~----~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 177 (346)
|+++++|++...+. + .+...|...|++++++| +..+++|||.|.+.+||+++.......+. +|...|
T Consensus 433 D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLs---GH~RGv 508 (775)
T KOG0319|consen 433 DCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLS---GHTRGV 508 (775)
T ss_pred CceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEee---CCccce
Confidence 99999999876221 1 23357999999999999 89999999999999999999999999999 899999
Q ss_pred EEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEE
Q 019117 178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS 255 (346)
Q Consensus 178 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~ 255 (346)
.++.|+| ....++|++.|++|+||.+.+ ..++.++.+|...|..+.|- +..|++
T Consensus 509 w~V~Fs~-~dq~laT~SgD~TvKIW~is~-----------------------fSClkT~eGH~~aVlra~F~~~~~qliS 564 (775)
T KOG0319|consen 509 WCVSFSK-NDQLLATCSGDKTVKIWSIST-----------------------FSCLKTFEGHTSAVLRASFIRNGKQLIS 564 (775)
T ss_pred EEEEecc-ccceeEeccCCceEEEEEecc-----------------------ceeeeeecCccceeEeeeeeeCCcEEEe
Confidence 9999999 889999999999999999999 45788999999999999997 899999
Q ss_pred EeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117 256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (346)
Q Consensus 256 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~ 322 (346)
++.||-|++|++++++ ++.++..|+..|++++-++.. .++++|+.||.|.+|.=-+
T Consensus 565 ~~adGliKlWnikt~e---------C~~tlD~H~DrvWaL~~~~~~--~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 565 AGADGLIKLWNIKTNE---------CEMTLDAHNDRVWALSVSPLL--DMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred ccCCCcEEEEeccchh---------hhhhhhhccceeEEEeecCcc--ceeEecCCCeEEEEeecCc
Confidence 9999999999999987 899999999999999999999 6899999999999996444
No 39
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9e-35 Score=241.23 Aligned_cols=265 Identities=22% Similarity=0.367 Sum_probs=226.2
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC-
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN- 107 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d- 107 (346)
......|+|.+|++ .-.+||++-..+ ..+|.+..-..++.+.. ...+|..++|. ..|. .||.|+..
T Consensus 262 n~~~~kvtaa~fH~----~t~~lvvgFssG~f~LyelP~f~lih~LSi-----s~~~I~t~~~N--~tGD-WiA~g~~kl 329 (893)
T KOG0291|consen 262 NQNSSKVTAAAFHK----GTNLLVVGFSSGEFGLYELPDFNLIHSLSI-----SDQKILTVSFN--STGD-WIAFGCSKL 329 (893)
T ss_pred cccccceeeeeccC----CceEEEEEecCCeeEEEecCCceEEEEeec-----ccceeeEEEec--ccCC-EEEEcCCcc
Confidence 33447899999999 568999999999 77999888777777764 45677777776 6687 89888765
Q ss_pred CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI 187 (346)
Q Consensus 108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 187 (346)
|.+-||++.+...+...++|...+++++++| +++++++|++||.|+|||..++-+..+|. .|.+.|+.+.|+. .+
T Consensus 330 gQLlVweWqsEsYVlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFt---eHts~Vt~v~f~~-~g 404 (893)
T KOG0291|consen 330 GQLLVWEWQSESYVLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFT---EHTSGVTAVQFTA-RG 404 (893)
T ss_pred ceEEEEEeeccceeeeccccccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEec---cCCCceEEEEEEe-cC
Confidence 8999999999999999999999999999999 99999999999999999999999999999 7999999999997 99
Q ss_pred cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee-cccceEEEEec--CCEEEEEeecC-eEE
Q 019117 188 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-HSNYVDCNRWL--GDFILSKSVDN-EIV 263 (346)
Q Consensus 188 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~--~~~l~~~~~d~-~i~ 263 (346)
+.+++.+.||+|+.||+..... .+++.. .+-...|++.+ |.++.+|+.|. .|.
T Consensus 405 ~~llssSLDGtVRAwDlkRYrN-----------------------fRTft~P~p~QfscvavD~sGelV~AG~~d~F~If 461 (893)
T KOG0291|consen 405 NVLLSSSLDGTVRAWDLKRYRN-----------------------FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIF 461 (893)
T ss_pred CEEEEeecCCeEEeeeecccce-----------------------eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEE
Confidence 9999999999999999988332 222221 22234566666 88888888875 499
Q ss_pred EEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC-CcceeeeeeeeEEEEEecC
Q 019117 264 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS-PPVLIARLICFSLHVKYNP 342 (346)
Q Consensus 264 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~sp 342 (346)
+|++++++ .+..+.+|+++|.+++|+|++ ..|+++|.|.+|++||+-.. ..+....+...+..++|+|
T Consensus 462 vWS~qTGq---------llDiLsGHEgPVs~l~f~~~~--~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrP 530 (893)
T KOG0291|consen 462 VWSVQTGQ---------LLDILSGHEGPVSGLSFSPDG--SLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRP 530 (893)
T ss_pred EEEeecCe---------eeehhcCCCCcceeeEEcccc--CeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcC
Confidence 99999998 899999999999999999999 79999999999999998775 3456777888899999999
Q ss_pred CCC
Q 019117 343 QSV 345 (346)
Q Consensus 343 dg~ 345 (346)
||+
T Consensus 531 dG~ 533 (893)
T KOG0291|consen 531 DGK 533 (893)
T ss_pred CCC
Confidence 996
No 40
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.8e-34 Score=228.35 Aligned_cols=326 Identities=18% Similarity=0.236 Sum_probs=245.9
Q ss_pred ccCcceeeeccccccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc---EEEEEeccCceeeeEeeeecCC
Q 019117 5 AIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR---VTVYQCLEGGVIAALQSYVDED 81 (346)
Q Consensus 5 a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~---v~i~~~~~~~~~~~~~~~~~~~ 81 (346)
|.|+......+-........+..+++.-.++|.+++|++ ++++++..++++ .++|-..+|..+..+.+
T Consensus 75 ASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~----ds~RI~avGEGrerfg~~F~~DSG~SvGei~G----- 145 (603)
T KOG0318|consen 75 ASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDF----DSKRIAAVGEGRERFGHVFLWDSGNSVGEITG----- 145 (603)
T ss_pred eecCCcCcEEEEeccCcceeeeeeeeecccccccceeCC----CCcEEEEEecCccceeEEEEecCCCccceeec-----
Confidence 334444443444444556677777888899999999998 677777777664 44444457777777775
Q ss_pred CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC
Q 019117 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG 161 (346)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 161 (346)
|...+.++.|- |.....+++|+.|++|.+|+-.--+...++..|...|.++.|+| ++.+|++++.||++.+||-.++
T Consensus 146 hSr~ins~~~K--psRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGktg 222 (603)
T KOG0318|consen 146 HSRRINSVDFK--PSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKTG 222 (603)
T ss_pred cceeEeeeecc--CCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCCc
Confidence 77788888877 55555799999999999999777777888899999999999999 8999999999999999999999
Q ss_pred eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeec-----------C----------C
Q 019117 162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT-----------D----------L 220 (346)
Q Consensus 162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----------~----------~ 220 (346)
+.+..+....+|.+.|.+++|+| ++..++|++.|.+++|||+...+......+... . .
T Consensus 223 e~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~ 301 (603)
T KOG0318|consen 223 EKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGT 301 (603)
T ss_pred cEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcE
Confidence 99999987778999999999999 999999999999999999988533222111111 0 0
Q ss_pred CCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCC--ccccc---------------
Q 019117 221 PSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE--GTADI--------------- 281 (346)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~--------------- 281 (346)
.. +.......++..+.+|...|+++..+ +.+|++|+.||.|.-|+..++...+.. .+...
T Consensus 302 in-~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~ 380 (603)
T KOG0318|consen 302 IN-YLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTI 380 (603)
T ss_pred EE-EecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEE
Confidence 00 11122223677889999999999998 789999999999999998776432110 00000
Q ss_pred -----------------------------------------------cccccC--------CCcCeeEEEEeecCCcceE
Q 019117 282 -----------------------------------------------LQKYPV--------PECDIWFIKFSCDFHYNAA 306 (346)
Q Consensus 282 -----------------------------------------------~~~~~~--------~~~~v~~~~~s~~~~~~~l 306 (346)
+.-++. ..-...+++++|++ ..+
T Consensus 381 g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~--~~v 458 (603)
T KOG0318|consen 381 GWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG--SEV 458 (603)
T ss_pred ecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC--CEE
Confidence 000000 11235678899998 789
Q ss_pred EEEcCCCcEEEEEcCCCCcc---eeeeeeeeEEEEEecCCCCC
Q 019117 307 AIGNREGKIFVWELQSSPPV---LIARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 307 ~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~spdg~~ 346 (346)
+.|+.||.|+||.+..++.. ....+.+.++.++|||||.|
T Consensus 459 aVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~y 501 (603)
T KOG0318|consen 459 AVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAY 501 (603)
T ss_pred EEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcE
Confidence 99999999999999987643 34566677999999999986
No 41
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.3e-35 Score=247.53 Aligned_cols=247 Identities=26% Similarity=0.452 Sum_probs=211.7
Q ss_pred eeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEec-cCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117 24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCL-EGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (346)
Q Consensus 24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (346)
.+...+.+|...|++++|+| ++.++++++.|. |+|||+. .+..++.+.. |...|++++|. |+|+ ++
T Consensus 194 ~~~~~l~~h~~~v~~~~fs~----d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g-----H~~~v~~~~f~--p~g~-~i 261 (456)
T KOG0266|consen 194 NLLRELSGHTRGVSDVAFSP----DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG-----HSTYVTSVAFS--PDGN-LL 261 (456)
T ss_pred hhhccccccccceeeeEECC----CCcEEEEecCCceEEEeeccCCCeEEEEecC-----CCCceEEEEec--CCCC-EE
Confidence 46667789999999999999 788999999999 9999994 4466677764 77788777776 9996 99
Q ss_pred EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe--eEEEecccCCCCc--ce
Q 019117 102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI--CILIFAGAGGHRN--EV 177 (346)
Q Consensus 102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~--~v 177 (346)
++|+.|++|+|||+++++++..+.+|.+.|++++|++ ++.+|++++.|+.|++||+.++. ++..+. ++.. ++
T Consensus 262 ~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~---~~~~~~~~ 337 (456)
T KOG0266|consen 262 VSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLS---GAENSAPV 337 (456)
T ss_pred EEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeeccc---CCCCCCce
Confidence 9999999999999999999999999999999999999 89999999999999999999998 456666 3433 59
Q ss_pred EEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEE---Eec--CCE
Q 019117 178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN---RWL--GDF 252 (346)
Q Consensus 178 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~--~~~ 252 (346)
+++.|+| ++.++++++.|+.+++||++. ...+.....|...+.|+ ... +.+
T Consensus 338 ~~~~fsp-~~~~ll~~~~d~~~~~w~l~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (456)
T KOG0266|consen 338 TSVQFSP-NGKYLLSASLDRTLKLWDLRS-----------------------GKSVGTYTGHSNLVRCIFSPTLSTGGKL 393 (456)
T ss_pred eEEEECC-CCcEEEEecCCCeEEEEEccC-----------------------CcceeeecccCCcceeEecccccCCCCe
Confidence 9999999 999999999999999999998 34455666666654333 112 889
Q ss_pred EEEEeecCeEEEEcCCCCCCCCCCccccccccccCC-CcCeeEEEEeecCCcceEEEEc--CCCcEEEEEcC
Q 019117 253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP-ECDIWFIKFSCDFHYNAAAIGN--REGKIFVWELQ 321 (346)
Q Consensus 253 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~~l~~~~--~dg~i~iwd~~ 321 (346)
+++|+.|+.|.+||+.+.. .+..+.+| ...+..+.++|.. .++++++ .|+.+++|...
T Consensus 394 i~sg~~d~~v~~~~~~s~~---------~~~~l~~h~~~~~~~~~~~~~~--~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 394 IYSGSEDGSVYVWDSSSGG---------ILQRLEGHSKAAVSDLSSHPTE--NLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEEEeCCceEEEEeCCccc---------hhhhhcCCCCCceeccccCCCc--CeeeecCcCCCceEEEecCC
Confidence 9999999999999999866 78888888 8889999999998 6888888 78999999754
No 42
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.6e-35 Score=228.61 Aligned_cols=281 Identities=18% Similarity=0.263 Sum_probs=228.7
Q ss_pred eecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceee-eEee------e----ec--CCCccceEEEEEE
Q 019117 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIA-ALQS------Y----VD--EDKEESFYTVSWA 92 (346)
Q Consensus 27 ~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~-~~~~------~----~~--~~~~~~v~~~~~~ 92 (346)
..+..|.-+|.+|+++| +..+..+++.++ |.=|+..++.... .+.. + .. ..|...+.+++.+
T Consensus 136 ~~~~~H~~s~~~vals~----d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS 211 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSP----DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVS 211 (479)
T ss_pred eeeccccCcceEEEeec----cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEc
Confidence 45578999999999999 678999999998 9999988877441 1111 1 01 1355566555555
Q ss_pred EcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCC
Q 019117 93 CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGG 172 (346)
Q Consensus 93 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 172 (346)
+||+ ||++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-. +...+++++.|++|++|+++....+.++- +
T Consensus 212 --~Dgk-ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vetly---G 284 (479)
T KOG0299|consen 212 --SDGK-YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVETLY---G 284 (479)
T ss_pred --CCCc-EEEecCCCceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHHHHHHh---C
Confidence 9999 999999999999999999999999999999999999998 88999999999999999999888888887 8
Q ss_pred CCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CC
Q 019117 173 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GD 251 (346)
Q Consensus 173 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 251 (346)
|+..|.++.... .++.+-+|+.|+++++|++.. .....+.+|...+.|++|- ..
T Consensus 285 Hqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~e------------------------esqlifrg~~~sidcv~~In~~ 339 (479)
T KOG0299|consen 285 HQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPE------------------------ESQLIFRGGEGSIDCVAFINDE 339 (479)
T ss_pred Cccceeeechhc-ccceEEeccccceeEEEeccc------------------------cceeeeeCCCCCeeeEEEeccc
Confidence 999999999885 667666677999999999965 2334567788899999997 88
Q ss_pred EEEEEeecCeEEEEcCCCCCCCCCCccccccccc---cCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC----C
Q 019117 252 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY---PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS----P 324 (346)
Q Consensus 252 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~----~ 324 (346)
.+++|+.+|.|.+|++...++.........+... ..+..+|++++..|.. .++++|+.+|.|++|-+.++ +
T Consensus 340 HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s--dL~asGS~~G~vrLW~i~~g~r~i~ 417 (479)
T KOG0299|consen 340 HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS--DLLASGSWSGCVRLWKIEDGLRAIN 417 (479)
T ss_pred ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccC--ceEEecCCCCceEEEEecCCccccc
Confidence 9999999999999999988754332222222222 1122489999999988 79999999999999999988 3
Q ss_pred cceeeeeeeeEEEEEecCCCC
Q 019117 325 PVLIARLICFSLHVKYNPQSV 345 (346)
Q Consensus 325 ~~~~~~~~~~~~~~~~spdg~ 345 (346)
++....+.+.+++++|+++|+
T Consensus 418 ~l~~ls~~GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 418 LLYSLSLVGFVNSLAFSNSGK 438 (479)
T ss_pred eeeecccccEEEEEEEccCCC
Confidence 455667788999999999997
No 43
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8e-35 Score=240.86 Aligned_cols=279 Identities=15% Similarity=0.214 Sum_probs=231.9
Q ss_pred ccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117 20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI 98 (346)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (346)
..+.++.+.+-|..+.|.+++|-- +..+.||+++... +++|++.+..+. .+ ++|.+.|.++... .+|-
T Consensus 310 ~~~l~i~k~ivG~ndEI~Dm~~lG---~e~~~laVATNs~~lr~y~~~~~~c~-ii-----~GH~e~vlSL~~~--~~g~ 378 (775)
T KOG0319|consen 310 EDELTIVKQIVGYNDEILDMKFLG---PEESHLAVATNSPELRLYTLPTSYCQ-II-----PGHTEAVLSLDVW--SSGD 378 (775)
T ss_pred ccccEEehhhcCCchhheeeeecC---CccceEEEEeCCCceEEEecCCCceE-EE-----eCchhheeeeeec--ccCc
Confidence 466778888999999999999874 1457888887776 999987776654 33 3488999888844 5566
Q ss_pred cEEEEeecCCeEEEEEccCcc----eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEE---Eec---
Q 019117 99 PFLVAGGINGIIRVIDVSNEK----LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL---IFA--- 168 (346)
Q Consensus 99 ~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~--- 168 (346)
+|++|+.|.++++|.++++. ++....+|+..|.+++++.....+|+++|.|+++++|++...+... .+.
T Consensus 379 -llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~ 457 (775)
T KOG0319|consen 379 -LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRY 457 (775)
T ss_pred -EEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhH
Confidence 99999999999999885443 4566678999999999988778899999999999999997622111 110
Q ss_pred ccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEe
Q 019117 169 GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW 248 (346)
Q Consensus 169 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 248 (346)
....|...|++++.+| +..+++||+.|.+.++|++.. ......+.+|...|.|+.|
T Consensus 458 t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~-----------------------~~l~~vLsGH~RGvw~V~F 513 (775)
T KOG0319|consen 458 TERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQ-----------------------LRLLGVLSGHTRGVWCVSF 513 (775)
T ss_pred HHHhhcccccceEecC-CCceEEecccccceeeecccC-----------------------ceEEEEeeCCccceEEEEe
Confidence 1126999999999999 899999999999999999997 3457789999999999999
Q ss_pred c--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcc
Q 019117 249 L--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV 326 (346)
Q Consensus 249 ~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 326 (346)
+ .+.++|+|.|++|+||.+.+.. +++++.+|...|..+.|-.++ ..|++++.||.|++|++++++..
T Consensus 514 s~~dq~laT~SgD~TvKIW~is~fS---------ClkT~eGH~~aVlra~F~~~~--~qliS~~adGliKlWnikt~eC~ 582 (775)
T KOG0319|consen 514 SKNDQLLATCSGDKTVKIWSISTFS---------CLKTFEGHTSAVLRASFIRNG--KQLISAGADGLIKLWNIKTNECE 582 (775)
T ss_pred ccccceeEeccCCceEEEEEeccce---------eeeeecCccceeEeeeeeeCC--cEEEeccCCCcEEEEeccchhhh
Confidence 9 6699999999999999999877 899999999999999999999 78999999999999999999887
Q ss_pred eeee-eeeeEEEEEecCCCC
Q 019117 327 LIAR-LICFSLHVKYNPQSV 345 (346)
Q Consensus 327 ~~~~-~~~~~~~~~~spdg~ 345 (346)
.... +...+++++-+|++.
T Consensus 583 ~tlD~H~DrvWaL~~~~~~~ 602 (775)
T KOG0319|consen 583 MTLDAHNDRVWALSVSPLLD 602 (775)
T ss_pred hhhhhccceeEEEeecCccc
Confidence 7654 445688887777653
No 44
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-33 Score=210.44 Aligned_cols=273 Identities=18% Similarity=0.263 Sum_probs=217.2
Q ss_pred ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (346)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (346)
++++.+.+..-.+.|.++.|++ +|.+|++++.|. ++|||..++.+++.+.. +.-.+..++|. .... .
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~----~G~~litss~dDsl~LYd~~~g~~~~ti~s-----kkyG~~~~~Ft--h~~~-~ 70 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSD----DGLLLITSSEDDSLRLYDSLSGKQVKTINS-----KKYGVDLACFT--HHSN-T 70 (311)
T ss_pred ccccccccccCCCceeEEEecC----CCCEEEEecCCCeEEEEEcCCCceeeEeec-----ccccccEEEEe--cCCc-e
Confidence 4666777777888999999998 889999988775 99999999999998876 34455556776 3333 4
Q ss_pred EEEeec--CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceE
Q 019117 101 LVAGGI--NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 178 (346)
Q Consensus 101 l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 178 (346)
++.++. |.+|+..++.+.+.++.+.||...|++++.+| .+..+++++.|++|++||++..++...+. ...-.
T Consensus 71 ~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~-----~~~~p 144 (311)
T KOG1446|consen 71 VIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLN-----LSGRP 144 (311)
T ss_pred EEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEe-----cCCCc
Confidence 555554 88999999999999999999999999999999 77999999999999999999888877775 23334
Q ss_pred EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe-ecccceEEEEec--CCEEEE
Q 019117 179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS-VHSNYVDCNRWL--GDFILS 255 (346)
Q Consensus 179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~--~~~l~~ 255 (346)
.++|+| .|-+++++.....|++||+|.....+.. ...+. ......+.+.|+ |++++.
T Consensus 145 i~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~-------------------tf~i~~~~~~ew~~l~FS~dGK~iLl 204 (311)
T KOG1446|consen 145 IAAFDP-EGLIFALANGSELIKLYDLRSFDKGPFT-------------------TFSITDNDEAEWTDLEFSPDGKSILL 204 (311)
T ss_pred ceeECC-CCcEEEEecCCCeEEEEEecccCCCCce-------------------eEccCCCCccceeeeEEcCCCCEEEE
Confidence 588999 8888888887779999999996432221 11121 335667888898 999999
Q ss_pred EeecCeEEEEcCCCCCCCCCCccccccccccCCCc---CeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeee-
Q 019117 256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC---DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL- 331 (346)
Q Consensus 256 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~- 331 (346)
+...+.+.+.|.-++. .+..+..+.. --...+|+||+ +++++|+.||.|++|+++++..+....-
T Consensus 205 sT~~s~~~~lDAf~G~---------~~~tfs~~~~~~~~~~~a~ftPds--~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 205 STNASFIYLLDAFDGT---------VKSTFSGYPNAGNLPLSATFTPDS--KFVLSGSDDGTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred EeCCCcEEEEEccCCc---------EeeeEeeccCCCCcceeEEECCCC--cEEEEecCCCcEEEEEcCCCcEeeEecCC
Confidence 9999999999999887 4444444322 22567899999 7999999999999999999987776654
Q ss_pred -eeeEEEEEecCC
Q 019117 332 -ICFSLHVKYNPQ 343 (346)
Q Consensus 332 -~~~~~~~~~spd 343 (346)
.+++.++.|+|.
T Consensus 274 ~~~~~~~~~fnP~ 286 (311)
T KOG1446|consen 274 NGGPVSCVRFNPR 286 (311)
T ss_pred CCCCccccccCCc
Confidence 456788899985
No 45
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-34 Score=242.33 Aligned_cols=261 Identities=16% Similarity=0.283 Sum_probs=205.9
Q ss_pred eeeeeecc-cCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCcee-----------------------e----e
Q 019117 23 YRVTNKLQ-EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI-----------------------A----A 73 (346)
Q Consensus 23 ~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~-----------------------~----~ 73 (346)
....+.+. +|.+.|+++.||+ +|++||+|+.|+ |+||.+...+.. . .
T Consensus 256 l~~~Qe~~~ah~gaIw~mKFS~----DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~ 331 (712)
T KOG0283|consen 256 LTVVQEISNAHKGAIWAMKFSH----DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEK 331 (712)
T ss_pred eEEeeccccccCCcEEEEEeCC----CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccc
Confidence 34455566 8999999999999 899999999999 999998761000 0 0
Q ss_pred ------------------Ee----------eeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeec
Q 019117 74 ------------------LQ----------SYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV 125 (346)
Q Consensus 74 ------------------~~----------~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 125 (346)
+. -....+|...|..++|+ .++ +|++++.|.+|++|++...++++.|.
T Consensus 332 ~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS--Kn~--fLLSSSMDKTVRLWh~~~~~CL~~F~ 407 (712)
T KOG0283|consen 332 ISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS--KNN--FLLSSSMDKTVRLWHPGRKECLKVFS 407 (712)
T ss_pred ccccccccccccCCccccCCCccccccccchhhhhccchhheecccc--cCC--eeEeccccccEEeecCCCcceeeEEe
Confidence 00 00112477788888887 443 89999999999999999999999998
Q ss_pred cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEcc
Q 019117 126 GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 205 (346)
Q Consensus 126 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 205 (346)
|.+.|+||+|+|.+.++|++|+-||.|+||++...+.+.-.. -..-|++++|.| +|+..+.|+.+|.+++|+..
T Consensus 408 -HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D----l~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~ 481 (712)
T KOG0283|consen 408 -HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND----LRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTE 481 (712)
T ss_pred -cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh----hhhhheeEEecc-CCceEEEEEeccEEEEEEcc
Confidence 999999999999999999999999999999998777666554 568999999999 89999999999999999999
Q ss_pred ccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCcccccc
Q 019117 206 EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADIL 282 (346)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 282 (346)
..+......+..... .-..|. .|+.+.|. .+.+++.+.|..|||+|.++.+ ++
T Consensus 482 ~lk~~~~~~I~~~~~--------------Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~---------lv 537 (712)
T KOG0283|consen 482 GLKLVSDFHIRLHNK--------------KKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD---------LV 537 (712)
T ss_pred CCeEEEeeeEeeccC--------------ccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchh---------hh
Confidence 865433332221110 111233 79999998 4468999999999999998766 67
Q ss_pred ccccCCC--cCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117 283 QKYPVPE--CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (346)
Q Consensus 283 ~~~~~~~--~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (346)
..+++.. ..-....|+.|| ++++++++|..|++|++...
T Consensus 538 ~KfKG~~n~~SQ~~Asfs~Dg--k~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 538 HKFKGFRNTSSQISASFSSDG--KHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred hhhcccccCCcceeeeEccCC--CEEEEeecCceEEEEeCCCC
Confidence 7777643 233567899999 79999999999999998543
No 46
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=4.5e-34 Score=208.78 Aligned_cols=269 Identities=16% Similarity=0.162 Sum_probs=233.6
Q ss_pred eecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (346)
Q Consensus 27 ~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 105 (346)
+.+++|...|.+|+|+. +|..||+++.|+ +.+|++........+. ...|...|-.++|. |.....+++++
T Consensus 14 r~~~~~~~~v~Sv~wn~----~g~~lasgs~dktv~v~n~e~~r~~~~~~---~~gh~~svdql~w~--~~~~d~~atas 84 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNC----DGTKLASGSFDKTVSVWNLERDRFRKELV---YRGHTDSVDQLCWD--PKHPDLFATAS 84 (313)
T ss_pred HHhhhhhhcceEEEEcc----cCceeeecccCCceEEEEecchhhhhhhc---ccCCCcchhhheeC--CCCCcceEEec
Confidence 56789999999999998 899999999999 9999998775444333 34577788888887 55555899999
Q ss_pred cCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCC
Q 019117 106 INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS 185 (346)
Q Consensus 106 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 185 (346)
.|.+|++||.+.++++..+....+. .-+.|+| ++.+++.++.|..|.+.|.++.+.+...+ ....+..++|+.
T Consensus 85 ~dk~ir~wd~r~~k~~~~i~~~~en-i~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~----~~~e~ne~~w~~- 157 (313)
T KOG1407|consen 85 GDKTIRIWDIRSGKCTARIETKGEN-INITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQ----FKFEVNEISWNN- 157 (313)
T ss_pred CCceEEEEEeccCcEEEEeeccCcc-eEEEEcC-CCCEEEEecCcccEEEEEecccceeehhc----ccceeeeeeecC-
Confidence 9999999999999999888754444 4678999 89999999999999999999988887775 677888999995
Q ss_pred CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEE
Q 019117 186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIV 263 (346)
Q Consensus 186 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~ 263 (346)
++++++.....|+|.|..... -+++..+..|+....|+.|+ |++||+|+.|..+.
T Consensus 158 ~nd~Fflt~GlG~v~ILsyps-----------------------Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvS 214 (313)
T KOG1407|consen 158 SNDLFFLTNGLGCVEILSYPS-----------------------LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVS 214 (313)
T ss_pred CCCEEEEecCCceEEEEeccc-----------------------cccccccccCCcceEEEEECCCCceEeeccccceee
Confidence 777777777789999988877 45788999999999999999 99999999999999
Q ss_pred EEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCC
Q 019117 264 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQ 343 (346)
Q Consensus 264 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spd 343 (346)
+||++..- +++.+..+.-+|..+.||.|| ++||++|+|..|-|=++++|..+..+...+....++|+|.
T Consensus 215 LWD~~ELi---------C~R~isRldwpVRTlSFS~dg--~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk 283 (313)
T KOG1407|consen 215 LWDVDELI---------CERCISRLDWPVRTLSFSHDG--RMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPK 283 (313)
T ss_pred ccChhHhh---------hheeeccccCceEEEEeccCc--ceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCC
Confidence 99998755 778888888999999999999 7999999999999999999999999999999999999997
Q ss_pred CC
Q 019117 344 SV 345 (346)
Q Consensus 344 g~ 345 (346)
..
T Consensus 284 ~~ 285 (313)
T KOG1407|consen 284 RP 285 (313)
T ss_pred Cc
Confidence 54
No 47
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.9e-34 Score=216.44 Aligned_cols=257 Identities=19% Similarity=0.272 Sum_probs=216.6
Q ss_pred ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (346)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (346)
..++..++.||-..|..+++|+ .-.+|.+++.|+ |+.||+...+.++.+.+ |-..|++++.. |.-. .
T Consensus 182 tg~LkltltGhi~~vr~vavS~----rHpYlFs~gedk~VKCwDLe~nkvIR~YhG-----HlS~V~~L~lh--PTld-v 249 (460)
T KOG0285|consen 182 TGQLKLTLTGHIETVRGVAVSK----RHPYLFSAGEDKQVKCWDLEYNKVIRHYHG-----HLSGVYCLDLH--PTLD-V 249 (460)
T ss_pred cCeEEEeecchhheeeeeeecc----cCceEEEecCCCeeEEEechhhhhHHHhcc-----ccceeEEEecc--ccce-e
Confidence 4567778899999999999998 456999999999 99999999988877765 67788888877 6555 9
Q ss_pred EEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180 (346)
Q Consensus 101 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 180 (346)
|++|+.|.+++|||+++...+..+.+|..+|..+.+.| -...+++|+.|++|++||++.++.+..+. .|...|+++
T Consensus 250 l~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt---~hkksvral 325 (460)
T KOG0285|consen 250 LVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP-TDPQVITGSHDSTVRLWDLRAGKTMITLT---HHKKSVRAL 325 (460)
T ss_pred EEecCCcceEEEeeecccceEEEecCCCCcceeEEeec-CCCceEEecCCceEEEeeeccCceeEeee---cccceeeEE
Confidence 99999999999999999999999999999999999999 67789999999999999999999999988 799999999
Q ss_pred EecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeec
Q 019117 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVD 259 (346)
Q Consensus 181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d 259 (346)
+.+| ....+++++.| .|+-|++.. +..+..+.+|...|.++..+ ..++++|+..
T Consensus 326 ~lhP-~e~~fASas~d-nik~w~~p~-----------------------g~f~~nlsgh~~iintl~~nsD~v~~~G~dn 380 (460)
T KOG0285|consen 326 CLHP-KENLFASASPD-NIKQWKLPE-----------------------GEFLQNLSGHNAIINTLSVNSDGVLVSGGDN 380 (460)
T ss_pred ecCC-chhhhhccCCc-cceeccCCc-----------------------cchhhccccccceeeeeeeccCceEEEcCCc
Confidence 9999 88888888876 799999988 44566688999999999998 7899999999
Q ss_pred CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117 260 NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (346)
Q Consensus 260 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~ 322 (346)
|.+.+||.+++-.............+. .+..|.+.+|...+ ..|++|..|.+|++|.-..
T Consensus 381 g~~~fwdwksg~nyQ~~~t~vqpGSl~-sEagI~as~fDktg--~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 381 GSIMFWDWKSGHNYQRGQTIVQPGSLE-SEAGIFASCFDKTG--SRLITGEADKTIKMYKEDE 440 (460)
T ss_pred eEEEEEecCcCcccccccccccCCccc-cccceeEEeecccC--ceEEeccCCcceEEEeccc
Confidence 999999999875321111000001111 24578889998888 7899999999999997544
No 48
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.8e-33 Score=215.91 Aligned_cols=258 Identities=14% Similarity=0.235 Sum_probs=217.3
Q ss_pred cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (346)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (346)
...+..+++.||.++|.+++|.-.++ ....|++++.|+ +++|....+......... ..+|...|.+++.. ++|.
T Consensus 132 ~~Gk~~~~~~Ght~~ik~v~~v~~n~-~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~-~~GHk~~V~sVsv~--~sgt- 206 (423)
T KOG0313|consen 132 LKGKSIKTIVGHTGPIKSVAWVIKNS-SSCLFVSASMDQTLRLWKWNVGENKVKALKV-CRGHKRSVDSVSVD--SSGT- 206 (423)
T ss_pred cCCceEEEEecCCcceeeeEEEecCC-ccceEEEecCCceEEEEEecCchhhhhHHhH-hcccccceeEEEec--CCCC-
Confidence 34577788899999999888876443 234799999999 999998877654332211 12588899888876 8888
Q ss_pred EEEEeecCCeEEEEEccC-------------------------cceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEE
Q 019117 100 FLVAGGINGIIRVIDVSN-------------------------EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVR 154 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 154 (346)
.+++|+.|..|.||+..+ +.++.++.+|.++|.++.|++ ...+++++.|.+|+
T Consensus 207 r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk 284 (423)
T KOG0313|consen 207 RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIK 284 (423)
T ss_pred eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEE
Confidence 999999999999999321 234667889999999999996 67999999999999
Q ss_pred EEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceE
Q 019117 155 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF 234 (346)
Q Consensus 155 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (346)
.||+.++..+..+. ....++++..+| ...+|++|+.|..|++||.+.... .....
T Consensus 285 ~WDletg~~~~~~~----~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~g--------------------s~v~~ 339 (423)
T KOG0313|consen 285 VWDLETGGLKSTLT----TNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDG--------------------SVVSQ 339 (423)
T ss_pred EEEeecccceeeee----cCcceeEeeccc-ccceeeecCCCCceeecCCCCCCC--------------------ceeEE
Confidence 99999999999887 678899999999 899999999999999999998432 34567
Q ss_pred EEeecccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcC
Q 019117 235 IASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR 311 (346)
Q Consensus 235 ~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~ 311 (346)
++.+|.+.|.++.|+ ..+|++++.|+++++||+++.+ .++..+.+|...|.++.|...+ ++++|+.
T Consensus 340 s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k--------~plydI~~h~DKvl~vdW~~~~---~IvSGGa 408 (423)
T KOG0313|consen 340 SLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK--------APLYDIAGHNDKVLSVDWNEGG---LIVSGGA 408 (423)
T ss_pred eeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC--------CcceeeccCCceEEEEeccCCc---eEEeccC
Confidence 899999999999999 5689999999999999999876 3788999999999999999764 8999999
Q ss_pred CCcEEEEEcC
Q 019117 312 EGKIFVWELQ 321 (346)
Q Consensus 312 dg~i~iwd~~ 321 (346)
|++|+|+.-.
T Consensus 409 D~~l~i~~~~ 418 (423)
T KOG0313|consen 409 DNKLRIFKGS 418 (423)
T ss_pred cceEEEeccc
Confidence 9999998654
No 49
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-33 Score=218.40 Aligned_cols=276 Identities=16% Similarity=0.244 Sum_probs=221.3
Q ss_pred ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (346)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (346)
+.+..+.+..|.+.|+-+.||+ +|++||+++.|. ..+|.......++...... .|..+|..+.|+ ||.+ +
T Consensus 213 p~qt~qil~~htdEVWfl~FS~----nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv--gh~~~V~yi~wS--PDdr-y 283 (519)
T KOG0293|consen 213 PSQTWQILQDHTDEVWFLQFSH----NGKYLASASKDSTAIIWIVVYDVHFKLKKTLV--GHSQPVSYIMWS--PDDR-Y 283 (519)
T ss_pred CchhhhhHhhCCCcEEEEEEcC----CCeeEeeccCCceEEEEEEecCcceeeeeeee--cccCceEEEEEC--CCCC-e
Confidence 3455667899999999999999 899999999999 8899988777655544443 478888888887 9999 9
Q ss_pred EEEeecCCeEEEEEccCcceeeeec-cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEE
Q 019117 101 LVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS 179 (346)
Q Consensus 101 l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 179 (346)
|++++.+..+.+||+.+|.....+. ++...+.+++|.| ++..+++|+.|+++..||+. |+.+...+. .....|.+
T Consensus 284 LlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlD-gn~~~~W~g--vr~~~v~d 359 (519)
T KOG0293|consen 284 LLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLD-GNILGNWEG--VRDPKVHD 359 (519)
T ss_pred EEecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCC-cchhhcccc--cccceeEE
Confidence 9999999999999999999888776 3468899999999 89999999999999999986 666666652 13357999
Q ss_pred EEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe
Q 019117 180 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS 257 (346)
Q Consensus 180 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~ 257 (346)
++..+ ++.++++.+.|..|++++..... .. .+.....+|+++..+ ++++++.-
T Consensus 360 lait~-Dgk~vl~v~~d~~i~l~~~e~~~-----------------------dr-~lise~~~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 360 LAITY-DGKYVLLVTVDKKIRLYNREARV-----------------------DR-GLISEEQPITSFSISKDGKLALVNL 414 (519)
T ss_pred EEEcC-CCcEEEEEecccceeeechhhhh-----------------------hh-ccccccCceeEEEEcCCCcEEEEEc
Confidence 99998 89999999999999999988721 11 123345568888887 78999999
Q ss_pred ecCeEEEEcCCCCCCCCCCccccccccccCCCcC--eeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee-eeeee
Q 019117 258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD--IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA-RLICF 334 (346)
Q Consensus 258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~ 334 (346)
.+..+++||+...+ .+.++.+|... +..-+|.-..+ .++++||+|+.|+||+..+++++... .+...
T Consensus 415 ~~qei~LWDl~e~~---------lv~kY~Ghkq~~fiIrSCFgg~~~-~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~ 484 (519)
T KOG0293|consen 415 QDQEIHLWDLEENK---------LVRKYFGHKQGHFIIRSCFGGGND-KFIASGSEDSKVYIWHRISGKLLAVLSGHSKT 484 (519)
T ss_pred ccCeeEEeecchhh---------HHHHhhcccccceEEEeccCCCCc-ceEEecCCCceEEEEEccCCceeEeecCCcce
Confidence 99999999999766 78888888754 33334544333 69999999999999999999866543 23345
Q ss_pred EEEEEecCCCC
Q 019117 335 SLHVKYNPQSV 345 (346)
Q Consensus 335 ~~~~~~spdg~ 345 (346)
+++++|||..+
T Consensus 485 vNcVswNP~~p 495 (519)
T KOG0293|consen 485 VNCVSWNPADP 495 (519)
T ss_pred eeEEecCCCCH
Confidence 89999999754
No 50
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=3.7e-35 Score=227.36 Aligned_cols=267 Identities=20% Similarity=0.311 Sum_probs=220.1
Q ss_pred eeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc--eeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117 25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG--VIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (346)
Q Consensus 25 ~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (346)
....+..|.+.|..+.|-+ +...|++|+.|. |++|+....+ ....+. +..+.+..+.+. ++++ ++
T Consensus 167 ~~~~ld~h~gev~~v~~l~----~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa-----Gs~g~it~~d~d--~~~~-~~ 234 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLR----NSDTLATGGSDRIIKLWNVLGEKSELISTLA-----GSLGNITSIDFD--SDNK-HV 234 (459)
T ss_pred hhhhhhccccccceeEEcc----Ccchhhhcchhhhhhhhhcccchhhhhhhhh-----ccCCCcceeeec--CCCc-eE
Confidence 3445678999999999998 568999999999 9999976555 233333 255677777766 8898 88
Q ss_pred EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117 102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 181 (346)
Q Consensus 102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 181 (346)
++++.|+.+++|++...+...++.+|++.|+++.|.. ....+++|+.|.+|++||+....+.+++- ..+.+..++
T Consensus 235 iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l----~~S~cnDI~ 309 (459)
T KOG0288|consen 235 IAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVL----PGSQCNDIV 309 (459)
T ss_pred EeecCCCceeeeeccchhhhhhhcccccceeeehhhc-cccceeeccccchhhhhhhhhhheecccc----ccccccceE
Confidence 8999999999999999999999999999999999998 55569999999999999999988888775 567777887
Q ss_pred ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeec
Q 019117 182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD 259 (346)
Q Consensus 182 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d 259 (346)
.. ...+++|..|++|++||.+. ..+......+. .|+++..+ +..+++++.|
T Consensus 310 ~~---~~~~~SgH~DkkvRfwD~Rs-----------------------~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRD 362 (459)
T KOG0288|consen 310 CS---ISDVISGHFDKKVRFWDIRS-----------------------ADKTRSVPLGG-RVTSLDLSMDGLELLSSSRD 362 (459)
T ss_pred ec---ceeeeecccccceEEEeccC-----------------------CceeeEeecCc-ceeeEeeccCCeEEeeecCC
Confidence 75 35689999999999999998 44566666665 79998887 7789999999
Q ss_pred CeEEEEcCCCCCCCCCCccccccccccCC----CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee--
Q 019117 260 NEIVLWEPKMKEQSPGEGTADILQKYPVP----ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC-- 333 (346)
Q Consensus 260 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-- 333 (346)
.++.+.|+++.+ ..+.+... ...++.+.|||++ .|+++||.||.|+||++.+++........+
T Consensus 363 dtl~viDlRt~e---------I~~~~sA~g~k~asDwtrvvfSpd~--~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~ 431 (459)
T KOG0288|consen 363 DTLKVIDLRTKE---------IRQTFSAEGFKCASDWTRVVFSPDG--SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN 431 (459)
T ss_pred Cceeeeeccccc---------EEEEeeccccccccccceeEECCCC--ceeeeccCCCcEEEEEccCceEEEEeccCCCC
Confidence 999999999886 33333331 2458899999999 799999999999999999998776665543
Q ss_pred -eEEEEEecCCCCC
Q 019117 334 -FSLHVKYNPQSVY 346 (346)
Q Consensus 334 -~~~~~~~spdg~~ 346 (346)
.+++++|+|.|.+
T Consensus 432 ~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 432 AAITSLSWNPSGSG 445 (459)
T ss_pred cceEEEEEcCCCch
Confidence 3899999999875
No 51
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.1e-33 Score=208.14 Aligned_cols=268 Identities=16% Similarity=0.235 Sum_probs=215.1
Q ss_pred ccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117 20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI 98 (346)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (346)
...+.+...+..|.++|++|+.+ +.++|+|+.|. |+|||..+...+..+.. |.+.|+++.|.......
T Consensus 30 ~~~l~~lF~~~aH~~sitavAVs------~~~~aSGssDetI~IYDm~k~~qlg~ll~-----HagsitaL~F~~~~S~s 98 (362)
T KOG0294|consen 30 KPTLKPLFAFSAHAGSITALAVS------GPYVASGSSDETIHIYDMRKRKQLGILLS-----HAGSITALKFYPPLSKS 98 (362)
T ss_pred ceeeeccccccccccceeEEEec------ceeEeccCCCCcEEEEeccchhhhcceec-----cccceEEEEecCCcchh
Confidence 45566677789999999999996 58999999988 99999999888887775 78889999887432223
Q ss_pred cEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceE
Q 019117 99 PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 178 (346)
Q Consensus 99 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 178 (346)
.|++|+.||.|.+|+....+++..+++|.+.|+.++.+| .+.+.++.+.|+.+++||+-.|+.-..+. -....+
T Consensus 99 -hLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~----L~~~at 172 (362)
T KOG0294|consen 99 -HLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLN----LKNKAT 172 (362)
T ss_pred -heeeecCCCcEEEEEcCCeEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeec----cCCcce
Confidence 799999999999999999999999999999999999999 88999999999999999999888766665 333445
Q ss_pred EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEe
Q 019117 179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKS 257 (346)
Q Consensus 179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~ 257 (346)
.+.|+| .|.+++.++.+ .|-+|.+.+-. ++.....+..+.|+.|. +..|++|+
T Consensus 173 ~v~w~~-~Gd~F~v~~~~-~i~i~q~d~A~------------------------v~~~i~~~~r~l~~~~l~~~~L~vG~ 226 (362)
T KOG0294|consen 173 LVSWSP-QGDHFVVSGRN-KIDIYQLDNAS------------------------VFREIENPKRILCATFLDGSELLVGG 226 (362)
T ss_pred eeEEcC-CCCEEEEEecc-EEEEEecccHh------------------------HhhhhhccccceeeeecCCceEEEec
Confidence 599999 77777776654 68899888721 12222233557777777 88999999
Q ss_pred ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC-----Ccceeeeee
Q 019117 258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS-----PPVLIARLI 332 (346)
Q Consensus 258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~ 332 (346)
.|+.|++||.++.. ++..+.+|..+|..+.+--+....+|+++|.||.|++||+... +++......
T Consensus 227 d~~~i~~~D~ds~~---------~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~ 297 (362)
T KOG0294|consen 227 DNEWISLKDTDSDT---------PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTN 297 (362)
T ss_pred CCceEEEeccCCCc---------cceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeecC
Confidence 99999999999865 7888999999999998665544479999999999999999886 233344444
Q ss_pred eeEEEEE
Q 019117 333 CFSLHVK 339 (346)
Q Consensus 333 ~~~~~~~ 339 (346)
...+|+.
T Consensus 298 ~RltCl~ 304 (362)
T KOG0294|consen 298 VRLTCLR 304 (362)
T ss_pred Cccceee
Confidence 4455543
No 52
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.5e-34 Score=220.34 Aligned_cols=267 Identities=14% Similarity=0.207 Sum_probs=217.8
Q ss_pred cccCcceeeeccccccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCC
Q 019117 4 TAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDK 82 (346)
Q Consensus 4 ~a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~ 82 (346)
+..++..-+|...+... +++.+++.+|..+|..+.||| |.++|++|+.+. +.+||..+|.....+.. .+
T Consensus 242 aSkD~Taiiw~v~~d~~--~kl~~tlvgh~~~V~yi~wSP----DdryLlaCg~~e~~~lwDv~tgd~~~~y~~----~~ 311 (519)
T KOG0293|consen 242 ASKDSTAIIWIVVYDVH--FKLKKTLVGHSQPVSYIMWSP----DDRYLLACGFDEVLSLWDVDTGDLRHLYPS----GL 311 (519)
T ss_pred ccCCceEEEEEEecCcc--eeeeeeeecccCceEEEEECC----CCCeEEecCchHheeeccCCcchhhhhccc----Cc
Confidence 34455555666555333 899999999999999999999 668888888877 99999999998777663 25
Q ss_pred ccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccC-CCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC
Q 019117 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH-GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG 161 (346)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 161 (346)
+..+.+++|. |||. .+++|+.|+.+..||++. +.....++- ...|.+++..+ ++.++++...|..|++++.++.
T Consensus 312 ~~S~~sc~W~--pDg~-~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~ 386 (519)
T KOG0293|consen 312 GFSVSSCAWC--PDGF-RFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREAR 386 (519)
T ss_pred CCCcceeEEc--cCCc-eeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcC-CCcEEEEEecccceeeechhhh
Confidence 6788889998 9999 999999999999999864 444444432 35699999999 8889998899999999999877
Q ss_pred eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc
Q 019117 162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241 (346)
Q Consensus 162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (346)
.....+. ...+|++++.+. +++++++.-.+..|++||+.. ...+..+.+|..
T Consensus 387 ~dr~lis----e~~~its~~iS~-d~k~~LvnL~~qei~LWDl~e-----------------------~~lv~kY~Ghkq 438 (519)
T KOG0293|consen 387 VDRGLIS----EEQPITSFSISK-DGKLALVNLQDQEIHLWDLEE-----------------------NKLVRKYFGHKQ 438 (519)
T ss_pred hhhcccc----ccCceeEEEEcC-CCcEEEEEcccCeeEEeecch-----------------------hhHHHHhhcccc
Confidence 6665554 667999999997 999999999999999999997 334555666665
Q ss_pred ceE--EEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEE
Q 019117 242 YVD--CNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 316 (346)
Q Consensus 242 ~i~--~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~ 316 (346)
.-. .-+|- ..++++|++|+.|+||+..+++ ++..+.+|...|.+++|+|... .++|++|+||+|+
T Consensus 439 ~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk---------ll~~LsGHs~~vNcVswNP~~p-~m~ASasDDgtIR 508 (519)
T KOG0293|consen 439 GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK---------LLAVLSGHSKTVNCVSWNPADP-EMFASASDDGTIR 508 (519)
T ss_pred cceEEEeccCCCCcceEEecCCCceEEEEEccCCc---------eeEeecCCcceeeEEecCCCCH-HHhhccCCCCeEE
Confidence 422 22333 3699999999999999999988 8999999999999999999876 6999999999999
Q ss_pred EEEcCCC
Q 019117 317 VWELQSS 323 (346)
Q Consensus 317 iwd~~~~ 323 (346)
||.....
T Consensus 509 IWg~~~~ 515 (519)
T KOG0293|consen 509 IWGPSDN 515 (519)
T ss_pred EecCCcc
Confidence 9987653
No 53
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=9.2e-34 Score=222.32 Aligned_cols=256 Identities=19% Similarity=0.317 Sum_probs=212.3
Q ss_pred cCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceee----------eEeeeecCCCccceEEEEEEEcCCCCc
Q 019117 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIA----------ALQSYVDEDKEESFYTVSWACNVDGIP 99 (346)
Q Consensus 31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (346)
-|.+.|+.+.+-|. +..++|+.+.++ |.|||..+-.... .+.+ |...-+.++|.....|
T Consensus 122 ~h~gEVnRaRymPQ---np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~g-----H~~eg~glsWn~~~~g-- 191 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQ---NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKG-----HEKEGYGLSWNRQQEG-- 191 (422)
T ss_pred cCCccchhhhhCCC---CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEe-----ecccccccccccccce--
Confidence 58999999999994 457889888888 9999987533222 3333 4445566888855555
Q ss_pred EEEEeecCCeEEEEEccCcc-------eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC--CeeEEEeccc
Q 019117 100 FLVAGGINGIIRVIDVSNEK-------LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT--GICILIFAGA 170 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~ 170 (346)
.|++++.|+.|++||+.... ....+.+|...|..++|++....+|+++++|+.+.|||+++ .++.....
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~-- 269 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK-- 269 (422)
T ss_pred eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc--
Confidence 69999999999999996542 34567899999999999998899999999999999999994 45555555
Q ss_pred CCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-
Q 019117 171 GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL- 249 (346)
Q Consensus 171 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 249 (346)
+|.+.|.|++|+|.++.+|+||+.|++|.+||+|+. ..++.++..|.+.|.++.|+
T Consensus 270 -ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL----------------------~~~lh~~e~H~dev~~V~WSP 326 (422)
T KOG0264|consen 270 -AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL----------------------NKPLHTFEGHEDEVFQVEWSP 326 (422)
T ss_pred -ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc----------------------ccCceeccCCCcceEEEEeCC
Confidence 899999999999999999999999999999999994 45788999999999999999
Q ss_pred --CCEEEEEeecCeEEEEcCCCCCCC-----CCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117 250 --GDFILSKSVDNEIVLWEPKMKEQS-----PGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (346)
Q Consensus 250 --~~~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~ 322 (346)
...|++++.|+.+.+||+..-... ...+..+++....+|...|..+.|+|... -.+++.++|+.+.||....
T Consensus 327 h~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~eP-W~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 327 HNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEP-WTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCC-eEEEEecCCceEEEeeccc
Confidence 568999999999999999764322 23345566778888999999999999986 5889999999999999874
No 54
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=3.8e-33 Score=236.66 Aligned_cols=249 Identities=22% Similarity=0.388 Sum_probs=218.9
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (346)
+.+...+.||.+.|++++|.. -+.+|++|+.|. +++||..++.+...+.. |...+.++... .. ++
T Consensus 239 ~~i~~~l~GH~g~V~~l~~~~----~~~~lvsgS~D~t~rvWd~~sg~C~~~l~g-----h~stv~~~~~~----~~-~~ 304 (537)
T KOG0274|consen 239 YLILTRLVGHFGGVWGLAFPS----GGDKLVSGSTDKTERVWDCSTGECTHSLQG-----HTSSVRCLTID----PF-LL 304 (537)
T ss_pred eEEEeeccCCCCCceeEEEec----CCCEEEEEecCCcEEeEecCCCcEEEEecC-----CCceEEEEEcc----Cc-eE
Confidence 334444899999999999985 468999999898 99999999999999885 77777777654 23 78
Q ss_pred EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117 102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 181 (346)
Q Consensus 102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 181 (346)
++|+.|.+|++|++.++..+..+.+|.++|.++..+ +.++++|+.|++|++||+.+++++..+. +|..+|+++.
T Consensus 305 ~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~---gH~~~V~sl~ 378 (537)
T KOG0274|consen 305 VSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLS---GHTGRVYSLI 378 (537)
T ss_pred eeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeec---CCcceEEEEE
Confidence 899999999999999999999999999999999995 6899999999999999999999999999 8999999998
Q ss_pred ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCe
Q 019117 182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNE 261 (346)
Q Consensus 182 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~ 261 (346)
+.+ . ..+++|+.|++|++||+++.. .++..+..|...+..+.+.+++|++++.|++
T Consensus 379 ~~~-~-~~~~Sgs~D~~IkvWdl~~~~----------------------~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~ 434 (537)
T KOG0274|consen 379 VDS-E-NRLLSGSLDTTIKVWDLRTKR----------------------KCIHTLQGHTSLVSSLLLRDNFLVSSSADGT 434 (537)
T ss_pred ecC-c-ceEEeeeeccceEeecCCchh----------------------hhhhhhcCCcccccccccccceeEecccccc
Confidence 874 3 889999999999999999921 5788899999999999888999999999999
Q ss_pred EEEEcCCCCCCCCCCccccccccccC-CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCccee
Q 019117 262 IVLWEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI 328 (346)
Q Consensus 262 i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 328 (346)
|++||..+++ +++.+.+ |.+.|..+++. . ..+++++.||.+++||+++++....
T Consensus 435 Ik~WD~~~~~---------~~~~~~~~~~~~v~~l~~~--~--~~il~s~~~~~~~l~dl~~~~~~~~ 489 (537)
T KOG0274|consen 435 IKLWDAEEGE---------CLRTLEGRHVGGVSALALG--K--EEILCSSDDGSVKLWDLRSGTLIRT 489 (537)
T ss_pred EEEeecccCc---------eeeeeccCCcccEEEeecC--c--ceEEEEecCCeeEEEecccCchhhh
Confidence 9999999887 6777777 56788888887 2 4688999999999999999986653
No 55
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-33 Score=226.59 Aligned_cols=258 Identities=19% Similarity=0.289 Sum_probs=221.5
Q ss_pred ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (346)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (346)
...+++.+.--.-||++.+|-+ ..+++++|++|. |+||+..+++.++.+.. |.+-+.+++.. |.-. +
T Consensus 44 tqtmVksfeV~~~PvRa~kfia----RknWiv~GsDD~~IrVfnynt~ekV~~FeA-----H~DyIR~iavH--Pt~P-~ 111 (794)
T KOG0276|consen 44 TQTMVKSFEVSEVPVRAAKFIA----RKNWIVTGSDDMQIRVFNYNTGEKVKTFEA-----HSDYIRSIAVH--PTLP-Y 111 (794)
T ss_pred cceeeeeeeecccchhhheeee----ccceEEEecCCceEEEEecccceeeEEeec-----cccceeeeeec--CCCC-e
Confidence 3455666666778899999998 568999999998 99999999999888875 77778878776 7777 9
Q ss_pred EEEeecCCeEEEEEccCc-ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEE
Q 019117 101 LVAGGINGIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS 179 (346)
Q Consensus 101 l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 179 (346)
+++++.|-+|++||.+.+ .+.+++.+|+..|.+++|+|.+.+.|++++-|++|++|.+.+..+..++. +|...|+|
T Consensus 112 vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~---gHekGVN~ 188 (794)
T KOG0276|consen 112 VLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLE---GHEKGVNC 188 (794)
T ss_pred EEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeee---ccccCcce
Confidence 999999999999999875 57889999999999999999999999999999999999999999999999 89999999
Q ss_pred EEecCCCC--cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCC--EEEE
Q 019117 180 VDFHPSDI--YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD--FILS 255 (346)
Q Consensus 180 ~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~ 255 (346)
+.+.+ ++ .+|++|+.|.+|++||..+ ..++.++.+|...|..+.|++. .+++
T Consensus 189 Vdyy~-~gdkpylIsgaDD~tiKvWDyQt-----------------------k~CV~TLeGHt~Nvs~v~fhp~lpiiis 244 (794)
T KOG0276|consen 189 VDYYT-GGDKPYLISGADDLTIKVWDYQT-----------------------KSCVQTLEGHTNNVSFVFFHPELPIIIS 244 (794)
T ss_pred EEecc-CCCcceEEecCCCceEEEeecch-----------------------HHHHHHhhcccccceEEEecCCCcEEEE
Confidence 99997 43 5899999999999999999 6789999999999999999954 8999
Q ss_pred EeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee
Q 019117 256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR 330 (346)
Q Consensus 256 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (346)
|++||++|||+..+.+ ....+...-.++++++-.+.+ ..++.|.++|.| +..+-.++|.....
T Consensus 245 gsEDGTvriWhs~Ty~---------lE~tLn~gleRvW~I~~~k~~--~~i~vG~Deg~i-~v~lgreeP~vsMd 307 (794)
T KOG0276|consen 245 GSEDGTVRIWNSKTYK---------LEKTLNYGLERVWCIAAHKGD--GKIAVGFDEGSV-TVKLGREEPAVSMD 307 (794)
T ss_pred ecCCccEEEecCccee---------hhhhhhcCCceEEEEeecCCC--CeEEEeccCCcE-EEEccCCCCceeec
Confidence 9999999999999887 455666667799999988887 568888877765 44555555544433
No 56
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.2e-33 Score=229.25 Aligned_cols=269 Identities=16% Similarity=0.247 Sum_probs=226.6
Q ss_pred ecccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (346)
Q Consensus 28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 107 (346)
.+.||+..|.++++|. +..++++|+.+.+++|+..+.++++++.. + +.++..|-|.++ ++++|...
T Consensus 368 ~~~GHR~dVRsl~vS~----d~~~~~Sga~~SikiWn~~t~kciRTi~~-------~--y~l~~~Fvpgd~-~Iv~G~k~ 433 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSS----DSILLASGAGESIKIWNRDTLKCIRTITC-------G--YILASKFVPGDR-YIVLGTKN 433 (888)
T ss_pred eeccchhheeEEEeec----CceeeeecCCCcEEEEEccCcceeEEecc-------c--cEEEEEecCCCc-eEEEeccC
Confidence 4589999999999997 66788888888899999999999888753 2 334445558888 99999999
Q ss_pred CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC-----Ce--eEEEecc--cCCCCcceE
Q 019117 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT-----GI--CILIFAG--AGGHRNEVL 178 (346)
Q Consensus 108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----~~--~~~~~~~--~~~~~~~v~ 178 (346)
|.+.+||+.+...+.++++|.+.|++++.+| ++..+++||.|.+|++||..- +. ....+.. .-.-+..|.
T Consensus 434 Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL 512 (888)
T KOG0306|consen 434 GELQVFDLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVL 512 (888)
T ss_pred CceEEEEeehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEE
Confidence 9999999999999999999999999999999 899999999999999999741 11 1111110 002467899
Q ss_pred EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEE
Q 019117 179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK 256 (346)
Q Consensus 179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~ 256 (346)
|+.++| ++.+|+.+--|.++++|-+.+. .-..++.+|.-+|.|+..+ +++++||
T Consensus 513 ~v~~Sp-dgk~LaVsLLdnTVkVyflDtl-----------------------KFflsLYGHkLPV~smDIS~DSklivTg 568 (888)
T KOG0306|consen 513 CVSVSP-DGKLLAVSLLDNTVKVYFLDTL-----------------------KFFLSLYGHKLPVLSMDISPDSKLIVTG 568 (888)
T ss_pred EEEEcC-CCcEEEEEeccCeEEEEEecce-----------------------eeeeeecccccceeEEeccCCcCeEEec
Confidence 999999 9999999999999999999983 2355788999999999988 8899999
Q ss_pred eecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCccee-eeeeeeE
Q 019117 257 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI-ARLICFS 335 (346)
Q Consensus 257 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~ 335 (346)
+.|..|++|-++-+. +-..+-+|...|.++.|.|.. ..+.++|.|+.|+-||-...+.++. ..+...+
T Consensus 569 SADKnVKiWGLdFGD---------CHKS~fAHdDSvm~V~F~P~~--~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev 637 (888)
T KOG0306|consen 569 SADKNVKIWGLDFGD---------CHKSFFAHDDSVMSVQFLPKT--HLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEV 637 (888)
T ss_pred cCCCceEEeccccch---------hhhhhhcccCceeEEEEcccc--eeEEEecCcceEEeechhhhhhheeeccchhee
Confidence 999999999998766 788899999999999999987 6899999999999999888765443 3344558
Q ss_pred EEEEecCCCCC
Q 019117 336 LHVKYNPQSVY 346 (346)
Q Consensus 336 ~~~~~spdg~~ 346 (346)
++++.+|+|+|
T Consensus 638 ~cLav~~~G~~ 648 (888)
T KOG0306|consen 638 WCLAVSPNGSF 648 (888)
T ss_pred eeeEEcCCCCe
Confidence 99999999975
No 57
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=9.1e-33 Score=212.02 Aligned_cols=264 Identities=19% Similarity=0.277 Sum_probs=213.2
Q ss_pred cCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCe
Q 019117 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI 109 (346)
Q Consensus 31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 109 (346)
.|.+.|.+|...+ +.+++|+.|+ +++|| ..|+....+.+ |.+++..++|....+.+..|++++.|.+
T Consensus 103 ~hdDWVSsv~~~~------~~IltgsYDg~~riWd-~~Gk~~~~~~G-----ht~~ik~v~~v~~n~~~~~fvsas~Dqt 170 (423)
T KOG0313|consen 103 LHDDWVSSVKGAS------KWILTGSYDGTSRIWD-LKGKSIKTIVG-----HTGPIKSVAWVIKNSSSCLFVSASMDQT 170 (423)
T ss_pred cchhhhhhhcccC------ceEEEeecCCeeEEEe-cCCceEEEEec-----CCcceeeeEEEecCCccceEEEecCCce
Confidence 4888888888765 8999999999 99999 56777776664 7888888888765554447999999999
Q ss_pred EEEEEccCcce----eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC-------------------------
Q 019117 110 IRVIDVSNEKL----HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT------------------------- 160 (346)
Q Consensus 110 i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~------------------------- 160 (346)
+++|.++.++. +...++|...|.++...+ ++..+++|+.|.+|++|+..+
T Consensus 171 l~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~ 249 (423)
T KOG0313|consen 171 LRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGT 249 (423)
T ss_pred EEEEEecCchhhhhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccc
Confidence 99999987753 334459999999999999 899999999999999999321
Q ss_pred CeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc
Q 019117 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240 (346)
Q Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (346)
+.++..+. +|..+|.++.|++ ...+++++.|.+|+.||+..... ...+ ...
T Consensus 250 r~P~vtl~---GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~-----------------------~~~~-~~~ 300 (423)
T KOG0313|consen 250 RTPLVTLE---GHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGL-----------------------KSTL-TTN 300 (423)
T ss_pred cCceEEec---ccccceeeEEEcC--CCceEeecccceEEEEEeecccc-----------------------eeee-ecC
Confidence 12334444 8999999999985 67799999999999999998332 2222 235
Q ss_pred cceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117 241 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (346)
Q Consensus 241 ~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw 318 (346)
..+.|+.+. .++|++|+.|..|++||.+++. .....+.+.+|...|.++.|+|... ..|++|+.|+++++|
T Consensus 301 ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~------gs~v~~s~~gH~nwVssvkwsp~~~-~~~~S~S~D~t~klW 373 (423)
T KOG0313|consen 301 KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD------GSVVSQSLIGHKNWVSSVKWSPTNE-FQLVSGSYDNTVKLW 373 (423)
T ss_pred cceeEeecccccceeeecCCCCceeecCCCCCC------CceeEEeeecchhhhhheecCCCCc-eEEEEEecCCeEEEE
Confidence 567777777 6799999999999999999875 2336788999999999999999987 589999999999999
Q ss_pred EcCCCC-cce-eeeeeeeEEEEEecCC
Q 019117 319 ELQSSP-PVL-IARLICFSLHVKYNPQ 343 (346)
Q Consensus 319 d~~~~~-~~~-~~~~~~~~~~~~~spd 343 (346)
|+++.+ ++. +..+...+.++.|+.-
T Consensus 374 DvRS~k~plydI~~h~DKvl~vdW~~~ 400 (423)
T KOG0313|consen 374 DVRSTKAPLYDIAGHNDKVLSVDWNEG 400 (423)
T ss_pred EeccCCCcceeeccCCceEEEEeccCC
Confidence 999866 444 3445566889998753
No 58
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7e-33 Score=206.45 Aligned_cols=246 Identities=17% Similarity=0.236 Sum_probs=209.4
Q ss_pred eeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117 26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (346)
Q Consensus 26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 104 (346)
...+++|.++|..+.|.+ ++..+++++.|+ |+.||.++|+..+..+. |..-|.++. +..-|..++.++
T Consensus 83 ~~~lkgHsgAVM~l~~~~----d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~-----h~~~vNs~~--p~rrg~~lv~Sg 151 (338)
T KOG0265|consen 83 FWVLKGHSGAVMELHGMR----DGSHILSCGTDKTVRGWDAETGKRIRKHKG-----HTSFVNSLD--PSRRGPQLVCSG 151 (338)
T ss_pred eeeeccccceeEeeeecc----CCCEEEEecCCceEEEEecccceeeehhcc-----ccceeeecC--ccccCCeEEEec
Confidence 345679999999999998 789999999999 99999999999888775 566666665 335676689999
Q ss_pred ecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecC
Q 019117 105 GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP 184 (346)
Q Consensus 105 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 184 (346)
+.|+++++||+++...++++. ....++++.|.. .+..+.+|+-|+.|++||++.......+. +|...|+.+..+|
T Consensus 152 sdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~ls---Gh~DtIt~lsls~ 226 (338)
T KOG0265|consen 152 SDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLS---GHADTITGLSLSR 226 (338)
T ss_pred CCCceEEEEeecccchhhccc-cceeEEEEEecc-cccceeeccccCceeeeccccCcceEEee---cccCceeeEEecc
Confidence 999999999999988888876 456799999998 88999999999999999999999999999 8999999999999
Q ss_pred CCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc--cc--eEEEEec--CCEEEEEee
Q 019117 185 SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS--NY--VDCNRWL--GDFILSKSV 258 (346)
Q Consensus 185 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--i~~~~~~--~~~l~~~~~ 258 (346)
++.++.+-+.|.++++||++..-. .+..+..+.+|. -. ...++|+ ++.+.+|+.
T Consensus 227 -~gs~llsnsMd~tvrvwd~rp~~p-------------------~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~ 286 (338)
T KOG0265|consen 227 -YGSFLLSNSMDNTVRVWDVRPFAP-------------------SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSA 286 (338)
T ss_pred -CCCccccccccceEEEEEecccCC-------------------CCceEEEeecchhhhhhhcceeeccCCCCccccccc
Confidence 999999999999999999998322 112234444433 22 3455666 778999999
Q ss_pred cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117 259 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (346)
Q Consensus 259 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw 318 (346)
|..+++||..... .+..+++|.+.|.+++|+|.. .+|.+++.|.+|++=
T Consensus 287 dr~vyvwd~~~r~---------~lyklpGh~gsvn~~~Fhp~e--~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 287 DRFVYVWDTTSRR---------ILYKLPGHYGSVNEVDFHPTE--PIILSCSSDKTIYLG 335 (338)
T ss_pred cceEEEeeccccc---------EEEEcCCcceeEEEeeecCCC--cEEEEeccCceeEee
Confidence 9999999998766 899999999999999999998 799999999999873
No 59
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=3.8e-34 Score=208.09 Aligned_cols=247 Identities=19% Similarity=0.319 Sum_probs=205.4
Q ss_pred eeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE
Q 019117 25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (346)
Q Consensus 25 ~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 103 (346)
-+-+|.||++.|+...++. +..+.|+++.|- -++||..+|..+..+. |..-|..++|. .|.+ +|++
T Consensus 51 wigtfeghkgavw~~~l~~----na~~aasaaadftakvw~a~tgdelhsf~------hkhivk~~af~--~ds~-~llt 117 (334)
T KOG0278|consen 51 WIGTFEGHKGAVWSATLNK----NATRAASAAADFTAKVWDAVTGDELHSFE------HKHIVKAVAFS--QDSN-YLLT 117 (334)
T ss_pred cEEeeeccCcceeeeecCc----hhhhhhhhcccchhhhhhhhhhhhhhhhh------hhheeeeEEec--ccch-hhhc
Confidence 4567899999999999886 667888888887 9999999999888776 77778777776 7777 9999
Q ss_pred eecCCeEEEEEccCcc-eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEe
Q 019117 104 GGINGIIRVIDVSNEK-LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 182 (346)
Q Consensus 104 ~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 182 (346)
|+.+..++|||++..+ +...+.+|++.|..+.|.. ..+.|++.++|++|++||.+++..++.+. ...+|+++.+
T Consensus 118 gg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~----~~s~VtSlEv 192 (334)
T KOG0278|consen 118 GGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLE----FNSPVTSLEV 192 (334)
T ss_pred cchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEe----cCCCCcceee
Confidence 9999999999998765 5678899999999999999 88899999999999999999999999997 7889999999
Q ss_pred cCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecC
Q 019117 183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN 260 (346)
Q Consensus 183 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~ 260 (346)
++ ++++|. ....+.|.+||..++... .... -+..|.+...+ ...+++|+.|.
T Consensus 193 s~-dG~ilT-ia~gssV~Fwdaksf~~l-----------------------Ks~k-~P~nV~SASL~P~k~~fVaGged~ 246 (334)
T KOG0278|consen 193 SQ-DGRILT-IAYGSSVKFWDAKSFGLL-----------------------KSYK-MPCNVESASLHPKKEFFVAGGEDF 246 (334)
T ss_pred cc-CCCEEE-EecCceeEEeccccccce-----------------------eecc-CccccccccccCCCceEEecCcce
Confidence 97 877554 455689999999984321 1111 12223333333 67899999999
Q ss_pred eEEEEcCCCCCCCCCCccccccccc-cCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcc
Q 019117 261 EIVLWEPKMKEQSPGEGTADILQKY-PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV 326 (346)
Q Consensus 261 ~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 326 (346)
.++.||..+++ .+..+ ++|.++|.++.|+||| ...++||+||+|++|.+..++..
T Consensus 247 ~~~kfDy~Tge---------Ei~~~nkgh~gpVhcVrFSPdG--E~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 247 KVYKFDYNTGE---------EIGSYNKGHFGPVHCVRFSPDG--ELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred EEEEEeccCCc---------eeeecccCCCCceEEEEECCCC--ceeeccCCCceEEEEEecCCCch
Confidence 99999999987 34444 8899999999999999 68999999999999998877643
No 60
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=9.7e-32 Score=218.35 Aligned_cols=244 Identities=25% Similarity=0.417 Sum_probs=207.3
Q ss_pred eeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE
Q 019117 25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (346)
Q Consensus 25 ~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 103 (346)
....+.+|...+..+.|+| +++++++++.++ |.+|+..+++....+.. +...+.++.|. ++++ ++++
T Consensus 43 ~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~-----~~~~i~~~~~~--~~~~-~~~~ 110 (289)
T cd00200 43 LLRTLKGHTGPVRDVAASA----DGTYLASGSSDKTIRLWDLETGECVRTLTG-----HTSYVSSVAFS--PDGR-ILSS 110 (289)
T ss_pred cEEEEecCCcceeEEEECC----CCCEEEEEcCCCeEEEEEcCcccceEEEec-----cCCcEEEEEEc--CCCC-EEEE
Confidence 4456678999999999999 667899998777 99999988766665553 55678777776 7776 8888
Q ss_pred eecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEec
Q 019117 104 GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 183 (346)
Q Consensus 104 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 183 (346)
++.++.|.+||+.+++....+..|...+.++.|+| ++.++++++.|+.|++||+++++.+..+. .|...+.+++|+
T Consensus 111 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~ 186 (289)
T cd00200 111 SSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLT---GHTGEVNSVAFS 186 (289)
T ss_pred ecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccccccceeEe---cCccccceEEEC
Confidence 88899999999998888888889999999999999 67888888889999999999888888887 688899999999
Q ss_pred CCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCe
Q 019117 184 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNE 261 (346)
Q Consensus 184 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~ 261 (346)
| ++..+++++.++.|++||++. ...+..+..|...+.++.|+ +.++++++.|+.
T Consensus 187 ~-~~~~l~~~~~~~~i~i~d~~~-----------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 242 (289)
T cd00200 187 P-DGEKLLSSSSDGTIKLWDLST-----------------------GKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT 242 (289)
T ss_pred C-CcCEEEEecCCCcEEEEECCC-----------------------CceecchhhcCCceEEEEEcCCCcEEEEEcCCCc
Confidence 8 777888888899999999987 23344555788899999998 567777777999
Q ss_pred EEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117 262 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (346)
Q Consensus 262 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd 319 (346)
|++||+.+++ .+..+..|...|.+++|++++ .+|++++.||.|++|+
T Consensus 243 i~i~~~~~~~---------~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 243 IRVWDLRTGE---------CVQTLSGHTNSVTSLAWSPDG--KRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEEcCCce---------eEEEccccCCcEEEEEECCCC--CEEEEecCCCeEEecC
Confidence 9999998765 556666788899999999998 6899999999999996
No 61
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.4e-33 Score=234.18 Aligned_cols=252 Identities=23% Similarity=0.357 Sum_probs=212.0
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (346)
..++..|.+|.++|..++|+| .+.+|++|++|. |++|+..+.+++.++.+ |-+-|..+.|. +.-. .+
T Consensus 41 ~tli~rFdeHdGpVRgv~FH~----~qplFVSGGDDykIkVWnYk~rrclftL~G-----HlDYVRt~~FH--heyP-WI 108 (1202)
T KOG0292|consen 41 GTLIDRFDEHDGPVRGVDFHP----TQPLFVSGGDDYKIKVWNYKTRRCLFTLLG-----HLDYVRTVFFH--HEYP-WI 108 (1202)
T ss_pred hhHHhhhhccCCccceeeecC----CCCeEEecCCccEEEEEecccceehhhhcc-----ccceeEEeecc--CCCc-eE
Confidence 346778899999999999999 678999999998 99999999999888876 55556656554 7776 99
Q ss_pred EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee------------------
Q 019117 102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC------------------ 163 (346)
Q Consensus 102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------------------ 163 (346)
+++|.|.+|+||++.+++++..+.+|+-.|.|..|+| ...+++++|-|.+|++||+.--+.
T Consensus 109 lSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~ 187 (1202)
T KOG0292|consen 109 LSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGN 187 (1202)
T ss_pred EEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccc
Confidence 9999999999999999999999999999999999999 889999999999999999862110
Q ss_pred -----------EEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceec
Q 019117 164 -----------ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP 232 (346)
Q Consensus 164 -----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (346)
...+ .+|...|+-++|+| .-.++++|+.|+.|++|.+...+ ...
T Consensus 188 ~dLfg~~DaVVK~VL---EGHDRGVNwaAfhp-TlpliVSG~DDRqVKlWrmnetK---------------------aWE 242 (1202)
T KOG0292|consen 188 SDLFGQTDAVVKHVL---EGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETK---------------------AWE 242 (1202)
T ss_pred hhhcCCcCeeeeeee---cccccccceEEecC-CcceEEecCCcceeeEEEecccc---------------------cee
Confidence 0112 28999999999999 88899999999999999998732 234
Q ss_pred eEEEeecccceEEEEecC--CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc
Q 019117 233 VFIASVHSNYVDCNRWLG--DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN 310 (346)
Q Consensus 233 ~~~~~~~~~~i~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~ 310 (346)
+-+..+|.+.|+++-|++ +++++.|+|++|+|||+...+ .++.+....+..+.++-+|.. +++++|-
T Consensus 243 vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt---------~v~tfrrendRFW~laahP~l--NLfAAgH 311 (1202)
T KOG0292|consen 243 VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT---------SVQTFRRENDRFWILAAHPEL--NLFAAGH 311 (1202)
T ss_pred ehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc---------ceeeeeccCCeEEEEEecCCc--ceeeeec
Confidence 567889999999999995 899999999999999998766 677887777889999999988 5666554
Q ss_pred CCCcEEEEEcCCCC
Q 019117 311 REGKIFVWELQSSP 324 (346)
Q Consensus 311 ~dg~i~iwd~~~~~ 324 (346)
|+-+.+|.++...
T Consensus 312 -DsGm~VFkleREr 324 (1202)
T KOG0292|consen 312 -DSGMIVFKLERER 324 (1202)
T ss_pred -CCceEEEEEcccC
Confidence 4445677776544
No 62
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-32 Score=200.36 Aligned_cols=254 Identities=15% Similarity=0.160 Sum_probs=213.7
Q ss_pred ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec
Q 019117 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI 106 (346)
Q Consensus 28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 106 (346)
.|+||..+++-|.|+. +|.+|.+++.|. ..+|-...|+.+..+.+ |.+.|+++... .+.+ .+++|+.
T Consensus 5 ~l~GHERplTqiKyN~----eGDLlFscaKD~~~~vw~s~nGerlGty~G-----HtGavW~~Did--~~s~-~liTGSA 72 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNR----EGDLLFSCAKDSTPTVWYSLNGERLGTYDG-----HTGAVWCCDID--WDSK-HLITGSA 72 (327)
T ss_pred ccccCccccceEEecC----CCcEEEEecCCCCceEEEecCCceeeeecC-----CCceEEEEEec--CCcc-eeeeccc
Confidence 3689999999999998 899999999999 99999889999888875 88999999887 5666 9999999
Q ss_pred CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeC-----CCCEEEEecC-------CCeeEEEecccCCCC
Q 019117 107 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK-----DESVRLWNVQ-------TGICILIFAGAGGHR 174 (346)
Q Consensus 107 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~-------~~~~~~~~~~~~~~~ 174 (346)
|.++++||+.+|+++..++ ...+|..+.|++ ++++++...+ .+.|.++|++ ..++...+. .+.
T Consensus 73 D~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~---t~~ 147 (327)
T KOG0643|consen 73 DQTAKLWDVETGKQLATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP---TPD 147 (327)
T ss_pred cceeEEEEcCCCcEEEEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec---CCc
Confidence 9999999999999999988 567899999999 7777776654 4679999998 445566666 578
Q ss_pred cceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCE
Q 019117 175 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDF 252 (346)
Q Consensus 175 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~ 252 (346)
+.++.+-|.| -++.|++|..||.|.+||+++++ ..+.+...|...|+.++++ ..+
T Consensus 148 skit~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~----------------------~~v~s~~~h~~~Ind~q~s~d~T~ 204 (327)
T KOG0643|consen 148 SKITSALWGP-LGETIIAGHEDGSISIYDARTGK----------------------ELVDSDEEHSSKINDLQFSRDRTY 204 (327)
T ss_pred cceeeeeecc-cCCEEEEecCCCcEEEEEcccCc----------------------eeeechhhhccccccccccCCcce
Confidence 9999999999 89999999999999999999843 2445667799999999999 779
Q ss_pred EEEEeecCeEEEEcCCCCCCCCCC----------------------------------------------cccccccccc
Q 019117 253 ILSKSVDNEIVLWEPKMKEQSPGE----------------------------------------------GTADILQKYP 286 (346)
Q Consensus 253 l~~~~~d~~i~iwd~~~~~~~~~~----------------------------------------------~~~~~~~~~~ 286 (346)
+++++.|.+-++||..+.+..... ...+.+..++
T Consensus 205 FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvk 284 (327)
T KOG0643|consen 205 FITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVK 284 (327)
T ss_pred EEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccc
Confidence 999999999999998765421100 0112345678
Q ss_pred CCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117 287 VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (346)
Q Consensus 287 ~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (346)
+|-++|++++|+|+| ...++|++||.|++..+...
T Consensus 285 GHFGPINsvAfhPdG--ksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 285 GHFGPINSVAFHPDG--KSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred ccccCcceeEECCCC--cccccCCCCceEEEEEeccc
Confidence 899999999999999 68999999999999877653
No 63
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=1.5e-31 Score=226.69 Aligned_cols=266 Identities=16% Similarity=0.221 Sum_probs=190.7
Q ss_pred CceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEee--------eecCCCccceEEEEEEEcC-CCCcEEEE
Q 019117 34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQS--------YVDEDKEESFYTVSWACNV-DGIPFLVA 103 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~-~~~~~l~~ 103 (346)
..|.....++ ++..+++++.+. ...|+...+..+..+.. .....|.+.|.+++|+ | ++. +|++
T Consensus 21 ~~i~~~~~~~----d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fs--P~d~~-~LaS 93 (493)
T PTZ00421 21 LNVTPSTALW----DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFN--PFDPQ-KLFT 93 (493)
T ss_pred eccccccccC----CCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEc--CCCCC-EEEE
Confidence 4455555555 445566666655 55665433322111110 0012477889888887 7 666 9999
Q ss_pred eecCCeEEEEEccCc-------ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcc
Q 019117 104 GGINGIIRVIDVSNE-------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE 176 (346)
Q Consensus 104 ~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 176 (346)
|+.|++|++||+.++ +.+..+.+|...|.+++|+|...++|++++.|++|++||+++++.+..+. +|...
T Consensus 94 gS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~---~h~~~ 170 (493)
T PTZ00421 94 ASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK---CHSDQ 170 (493)
T ss_pred EeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc---CCCCc
Confidence 999999999999765 34677889999999999999556799999999999999999999888887 79999
Q ss_pred eEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce-EEEEec--CCEE
Q 019117 177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV-DCNRWL--GDFI 253 (346)
Q Consensus 177 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~--~~~l 253 (346)
|.+++|+| ++.+|++++.|+.|++||+++ ...+..+..|...+ ..+.|. +..+
T Consensus 171 V~sla~sp-dG~lLatgs~Dg~IrIwD~rs-----------------------g~~v~tl~~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 171 ITSLEWNL-DGSLLCTTSKDKKLNIIDPRD-----------------------GTIVSSVEAHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred eEEEEEEC-CCCEEEEecCCCEEEEEECCC-----------------------CcEEEEEecCCCCcceEEEEcCCCCeE
Confidence 99999999 899999999999999999998 33455666776543 345565 4566
Q ss_pred EEEe----ecCeEEEEcCCCCCCCCCCccccccccccCC-CcCeeEEEEeecCCcceEEEEc-CCCcEEEEEcCCCCcce
Q 019117 254 LSKS----VDNEIVLWEPKMKEQSPGEGTADILQKYPVP-ECDIWFIKFSCDFHYNAAAIGN-REGKIFVWELQSSPPVL 327 (346)
Q Consensus 254 ~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~ 327 (346)
++++ .|+.|++||++.... ++.....+ ...+....|++++ .+|++++ .|+.|++||+.++++..
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~--------p~~~~~~d~~~~~~~~~~d~d~--~~L~lggkgDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMAS--------PYSTVDLDQSSALFIPFFDEDT--NLLYIGSKGEGNIRCFELMNERLTF 296 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCC--------ceeEeccCCCCceEEEEEcCCC--CEEEEEEeCCCeEEEEEeeCCceEE
Confidence 6654 479999999987542 22222222 2345566788998 5777766 59999999999988655
Q ss_pred eeeee--eeEEEEEecCC
Q 019117 328 IARLI--CFSLHVKYNPQ 343 (346)
Q Consensus 328 ~~~~~--~~~~~~~~spd 343 (346)
..... .....++|.|.
T Consensus 297 ~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 297 CSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EeeccCCCCCcceEeccc
Confidence 44332 22445666663
No 64
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=8e-32 Score=228.67 Aligned_cols=250 Identities=20% Similarity=0.293 Sum_probs=217.7
Q ss_pred CCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeee-EeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCe
Q 019117 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAA-LQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI 109 (346)
Q Consensus 32 h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 109 (346)
|...+.+..|+. ..+.+++.+. |++|+..++..+.. +.+ |.+.|+++++. . +..+|++|+.|.+
T Consensus 207 ~~~~~~~~q~~~------~~~~~~s~~~tl~~~~~~~~~~i~~~l~G-----H~g~V~~l~~~--~-~~~~lvsgS~D~t 272 (537)
T KOG0274|consen 207 DDHVVLCLQLHD------GFFKSGSDDSTLHLWDLNNGYLILTRLVG-----HFGGVWGLAFP--S-GGDKLVSGSTDKT 272 (537)
T ss_pred Ccchhhhheeec------CeEEecCCCceeEEeecccceEEEeeccC-----CCCCceeEEEe--c-CCCEEEEEecCCc
Confidence 566788888875 6888888888 88999998887766 553 88999999985 3 3339999999999
Q ss_pred EEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcE
Q 019117 110 IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR 189 (346)
Q Consensus 110 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 189 (346)
+++||..++++...+.+|.+.|.++...+ ..+++|+.|.+|++|++.++..+..+. +|..+|+++..+ +.+
T Consensus 273 ~rvWd~~sg~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~---~h~~~V~~v~~~---~~~ 343 (537)
T KOG0274|consen 273 ERVWDCSTGECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLR---GHTGPVNCVQLD---EPL 343 (537)
T ss_pred EEeEecCCCcEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEec---cccccEEEEEec---CCE
Confidence 99999999999999999999999998855 788999999999999999999999998 799999999985 678
Q ss_pred EEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecC-CEEEEEeecCeEEEEcCC
Q 019117 190 IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG-DFILSKSVDNEIVLWEPK 268 (346)
Q Consensus 190 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~d~~i~iwd~~ 268 (346)
+++|+.|++|++||+.. ...+..+.+|...|.++.+.+ .++++|+.|++|++||++
T Consensus 344 lvsgs~d~~v~VW~~~~-----------------------~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~ 400 (537)
T KOG0274|consen 344 LVSGSYDGTVKVWDPRT-----------------------GKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLR 400 (537)
T ss_pred EEEEecCceEEEEEhhh-----------------------ceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCC
Confidence 99999999999999998 568899999999999999998 999999999999999999
Q ss_pred CC-CCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee--eeEEEEEe
Q 019117 269 MK-EQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI--CFSLHVKY 340 (346)
Q Consensus 269 ~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~ 340 (346)
+. + ++..+.+|..-+..+.+. + ++|++++.|+.|++||..+++.+...... +.+..+++
T Consensus 401 ~~~~---------c~~tl~~h~~~v~~l~~~--~--~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~ 462 (537)
T KOG0274|consen 401 TKRK---------CIHTLQGHTSLVSSLLLR--D--NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALAL 462 (537)
T ss_pred chhh---------hhhhhcCCcccccccccc--c--ceeEeccccccEEEeecccCceeeeeccCCcccEEEeec
Confidence 88 4 889999998888666554 3 58999999999999999999987766653 44555544
No 65
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-32 Score=216.35 Aligned_cols=244 Identities=21% Similarity=0.280 Sum_probs=205.7
Q ss_pred ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec
Q 019117 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI 106 (346)
Q Consensus 28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 106 (346)
++....+.|+++.|-. ||++||.|...| |+|||..+...+..+.. |..++..+.|+ |.+...+++|+.
T Consensus 63 ~~srFk~~v~s~~fR~----DG~LlaaGD~sG~V~vfD~k~r~iLR~~~a-----h~apv~~~~f~--~~d~t~l~s~sD 131 (487)
T KOG0310|consen 63 TFSRFKDVVYSVDFRS----DGRLLAAGDESGHVKVFDMKSRVILRQLYA-----HQAPVHVTKFS--PQDNTMLVSGSD 131 (487)
T ss_pred hHHhhccceeEEEeec----CCeEEEccCCcCcEEEeccccHHHHHHHhh-----ccCceeEEEec--ccCCeEEEecCC
Confidence 3445667899999997 899999999988 99999666555555654 77778888877 666659999999
Q ss_pred CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC-eeEEEecccCCCCcceEEEEecCC
Q 019117 107 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-ICILIFAGAGGHRNEVLSVDFHPS 185 (346)
Q Consensus 107 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~ 185 (346)
|+.+++||+.+......+.+|++.|.|.+|+|.++..++||+.||.|++||++.. ..+.++. |..+|..+.+-|
T Consensus 132 d~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln----hg~pVe~vl~lp- 206 (487)
T KOG0310|consen 132 DKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN----HGCPVESVLALP- 206 (487)
T ss_pred CceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec----CCCceeeEEEcC-
Confidence 9999999999988777899999999999999977889999999999999999987 7778886 999999999999
Q ss_pred CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEE
Q 019117 186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIV 263 (346)
Q Consensus 186 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~ 263 (346)
++.++++++. ..|++||+..+. +.+.....|...|+|+.+. +..|++++-|+.|+
T Consensus 207 sgs~iasAgG-n~vkVWDl~~G~----------------------qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VK 263 (487)
T KOG0310|consen 207 SGSLIASAGG-NSVKVWDLTTGG----------------------QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVK 263 (487)
T ss_pred CCCEEEEcCC-CeEEEEEecCCc----------------------eehhhhhcccceEEEEEeecCCceEeecccccceE
Confidence 8888998874 589999999632 3344455599999999998 68999999999999
Q ss_pred EEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117 264 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (346)
Q Consensus 264 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~ 322 (346)
+||+.+.+ .+..+.. .++|.+++.+|++ ..++.|..||.+.+=+...
T Consensus 264 Vfd~t~~K---------vv~s~~~-~~pvLsiavs~dd--~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 264 VFDTTNYK---------VVHSWKY-PGPVLSIAVSPDD--QTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred EEEccceE---------EEEeeec-ccceeeEEecCCC--ceEEEecccceeeeehhhc
Confidence 99987766 5666654 3599999999998 6899999999887775444
No 66
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-32 Score=198.18 Aligned_cols=206 Identities=21% Similarity=0.306 Sum_probs=185.6
Q ss_pred CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC
Q 019117 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG 161 (346)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 161 (346)
++++|.++.+. -+|+ |.++++.|.+|++|+...+.+++++.+|...|..++.+. +...|++|+.|..+.+||+.+|
T Consensus 16 ~qgaV~avryN--~dGn-Y~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV~TG 91 (307)
T KOG0316|consen 16 AQGAVRAVRYN--VDGN-YCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVWDVNTG 91 (307)
T ss_pred cccceEEEEEc--cCCC-EEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEEEEEcccC
Confidence 67788777776 8899 999999999999999999999999999999999999998 8889999999999999999999
Q ss_pred eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc
Q 019117 162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241 (346)
Q Consensus 162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (346)
+.++.++ +|.+.|+.+.|+. +...+++|+.|.++++||.++.. ..|++.+....+
T Consensus 92 kv~Rr~r---gH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s---------------------~ePiQildea~D 146 (307)
T KOG0316|consen 92 KVDRRFR---GHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRS---------------------FEPIQILDEAKD 146 (307)
T ss_pred eeeeecc---cccceeeEEEecC-cceEEEeccccceeEEEEcccCC---------------------CCccchhhhhcC
Confidence 9999999 8999999999996 89999999999999999999833 357778888899
Q ss_pred ceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117 242 YVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (346)
Q Consensus 242 ~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~ 321 (346)
.|.++...+..+++|+.||++|.||++.++ ....+- ..+|++++|++|+ +.+++++.|+.+++.|-.
T Consensus 147 ~V~Si~v~~heIvaGS~DGtvRtydiR~G~---------l~sDy~--g~pit~vs~s~d~--nc~La~~l~stlrLlDk~ 213 (307)
T KOG0316|consen 147 GVSSIDVAEHEIVAGSVDGTVRTYDIRKGT---------LSSDYF--GHPITSVSFSKDG--NCSLASSLDSTLRLLDKE 213 (307)
T ss_pred ceeEEEecccEEEeeccCCcEEEEEeecce---------eehhhc--CCcceeEEecCCC--CEEEEeeccceeeecccc
Confidence 999999999999999999999999999887 333333 3489999999999 678899999999999999
Q ss_pred CCCcceee
Q 019117 322 SSPPVLIA 329 (346)
Q Consensus 322 ~~~~~~~~ 329 (346)
+|+++..+
T Consensus 214 tGklL~sY 221 (307)
T KOG0316|consen 214 TGKLLKSY 221 (307)
T ss_pred hhHHHHHh
Confidence 99876543
No 67
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=1.6e-30 Score=221.57 Aligned_cols=239 Identities=13% Similarity=0.162 Sum_probs=175.8
Q ss_pred EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCC-CCcEEEEeecCCeEEEEEccCcc--------eeeeeccCCCc
Q 019117 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEK--------LHKSFVGHGDS 130 (346)
Q Consensus 60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~ 130 (346)
+.+|+......+..+. .|...|.+++|+ |+ +. +|++|+.||+|+|||+.++. .+..+.+|...
T Consensus 56 I~L~~~~r~~~v~~L~-----gH~~~V~~lafs--P~~~~-lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~ 127 (568)
T PTZ00420 56 IRLENQMRKPPVIKLK-----GHTSSILDLQFN--PCFSE-ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK 127 (568)
T ss_pred EEeeecCCCceEEEEc-----CCCCCEEEEEEc--CCCCC-EEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence 8888866554444443 378889888887 75 45 99999999999999997642 34467889999
Q ss_pred eEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEcccccee
Q 019117 131 INEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTY 210 (346)
Q Consensus 131 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 210 (346)
|.+++|+|....+|++++.|++|++||+++++.+..+. |...|.+++|+| ++.+|++++.|+.|++||+++
T Consensus 128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~----~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rs---- 198 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN----MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRK---- 198 (568)
T ss_pred EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe----cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCC----
Confidence 99999999444466899999999999999998877775 667899999999 899999999999999999998
Q ss_pred eeeceeecCCCCCCCCccceeceEEEeecccceEEEE-----ec--CCEEEEEeecC----eEEEEcCCCCCCCCCCccc
Q 019117 211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR-----WL--GDFILSKSVDN----EIVLWEPKMKEQSPGEGTA 279 (346)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~--~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~ 279 (346)
...+..+..|.+.+.+.. |+ ++++++++.|+ .|+|||++....
T Consensus 199 -------------------g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~------- 252 (568)
T PTZ00420 199 -------------------QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS------- 252 (568)
T ss_pred -------------------CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC-------
Confidence 334566777877643322 22 57889888774 799999986431
Q ss_pred ccccccc--CCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCccee--eeeeeeEEEEEecCCC
Q 019117 280 DILQKYP--VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI--ARLICFSLHVKYNPQS 344 (346)
Q Consensus 280 ~~~~~~~--~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~spdg 344 (346)
++..+. .+.+.+...-..+++ .++++|+.|+.|++|++..+..... +....+...++|.|.-
T Consensus 253 -pl~~~~ld~~~~~L~p~~D~~tg--~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 253 -ALVTMSIDNASAPLIPHYDESTG--LIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred -ceEEEEecCCccceEEeeeCCCC--CEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence 333322 222333333333445 6899999999999999987753322 2223345678888864
No 68
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=7.5e-32 Score=214.93 Aligned_cols=282 Identities=15% Similarity=0.204 Sum_probs=212.6
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCce-eeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV-IAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (346)
......|++|+..|.++++.| .|..|++|+.|. |++||+..... .+.++... +.....|.++.|+ +.|. .
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp----~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~-P~E~h~i~sl~ys--~Tg~-~ 228 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDP----SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ-PCETHQINSLQYS--VTGD-Q 228 (641)
T ss_pred ccceEeccCCceEEEEeeecC----CCceeeeccccceEEEEecccccccchhhhccC-cccccccceeeec--CCCC-e
Confidence 345556789999999999999 899999999999 99999875432 22222221 2245677778777 7787 6
Q ss_pred EEEeecCCeEEEEEccCccee------------eeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe-eEEEe
Q 019117 101 LVAGGINGIIRVIDVSNEKLH------------KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-CILIF 167 (346)
Q Consensus 101 l~~~~~dg~i~iwd~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~ 167 (346)
|++.+.....+|+|-+..+.. ..-++|...++|.+|+|.+...|++++.||++++||+...+ .+..+
T Consensus 229 iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi 308 (641)
T KOG0772|consen 229 ILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI 308 (641)
T ss_pred EEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEE
Confidence 666666788999995443322 23367999999999999888999999999999999997543 33444
Q ss_pred cc--cCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc--ce
Q 019117 168 AG--AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN--YV 243 (346)
Q Consensus 168 ~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i 243 (346)
+. ..+..-.++.++|+| ++.+|++|..||.|.+|+.+.... ......-..|.. .|
T Consensus 309 k~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v--------------------~p~~~vk~AH~~g~~I 367 (641)
T KOG0772|consen 309 KTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTV--------------------RPVMKVKDAHLPGQDI 367 (641)
T ss_pred eeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCccc--------------------ccceEeeeccCCCCce
Confidence 32 224456789999999 999999999999999999876221 223344556777 89
Q ss_pred EEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCC--CcCeeEEEEeecCCcceEEEEcC------CC
Q 019117 244 DCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP--ECDIWFIKFSCDFHYNAAAIGNR------EG 313 (346)
Q Consensus 244 ~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~------dg 313 (346)
+||.|+ |++|++-+.|+++++||++..+. ++....+- .-+-+.++|||+. +++++|+. .|
T Consensus 368 tsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk--------pL~~~tgL~t~~~~tdc~FSPd~--kli~TGtS~~~~~~~g 437 (641)
T KOG0772|consen 368 TSISFSYDGNYLLSRGFDDTLKVWDLRQFKK--------PLNVRTGLPTPFPGTDCCFSPDD--KLILTGTSAPNGMTAG 437 (641)
T ss_pred eEEEeccccchhhhccCCCceeeeecccccc--------chhhhcCCCccCCCCccccCCCc--eEEEecccccCCCCCc
Confidence 999999 99999999999999999998763 44433331 1245678999999 68888863 56
Q ss_pred cEEEEEcCCCCcceeeeeee-eEEEEEecCC
Q 019117 314 KIFVWELQSSPPVLIARLIC-FSLHVKYNPQ 343 (346)
Q Consensus 314 ~i~iwd~~~~~~~~~~~~~~-~~~~~~~spd 343 (346)
.+.+||..+.+.+..+.+.. .+..+.|+|-
T Consensus 438 ~L~f~d~~t~d~v~ki~i~~aSvv~~~Whpk 468 (641)
T KOG0772|consen 438 TLFFFDRMTLDTVYKIDISTASVVRCLWHPK 468 (641)
T ss_pred eEEEEeccceeeEEEecCCCceEEEEeecch
Confidence 89999999988777666554 5778899883
No 69
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=9.6e-31 Score=238.70 Aligned_cols=253 Identities=16% Similarity=0.213 Sum_probs=200.1
Q ss_pred CCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcC-CCCcEEEEeecCCe
Q 019117 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV-DGIPFLVAGGINGI 109 (346)
Q Consensus 32 h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~l~~~~~dg~ 109 (346)
+...|.+++|+|. .+.+||+++.|+ |++||+.+++.+..+.. |...|++++|. | ++. +|++|+.||.
T Consensus 531 ~~~~v~~l~~~~~---~~~~las~~~Dg~v~lWd~~~~~~~~~~~~-----H~~~V~~l~~~--p~~~~-~L~Sgs~Dg~ 599 (793)
T PLN00181 531 SRSKLSGICWNSY---IKSQVASSNFEGVVQVWDVARSQLVTEMKE-----HEKRVWSIDYS--SADPT-LLASGSDDGS 599 (793)
T ss_pred ccCceeeEEeccC---CCCEEEEEeCCCeEEEEECCCCeEEEEecC-----CCCCEEEEEEc--CCCCC-EEEEEcCCCE
Confidence 3467999999983 367899999998 99999988877666543 77889888886 5 566 9999999999
Q ss_pred EEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe-eEEEecccCCCCcceEEEEecCCCCc
Q 019117 110 IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-CILIFAGAGGHRNEVLSVDFHPSDIY 188 (346)
Q Consensus 110 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~ 188 (346)
|++||+.+++.+..+..+ ..|.++.|++.++.+|++|+.||.|++||+++.+ .+..+. +|...|.++.|. ++.
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~---~h~~~V~~v~f~--~~~ 673 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI---GHSKTVSYVRFV--DSS 673 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec---CCCCCEEEEEEe--CCC
Confidence 999999999888888754 6799999976578999999999999999998765 455665 799999999997 567
Q ss_pred EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEc
Q 019117 189 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWE 266 (346)
Q Consensus 189 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd 266 (346)
++++++.|++|++||++..... ....++..+.+|...+.++.|+ +.+|++|+.|+.|++|+
T Consensus 674 ~lvs~s~D~~ikiWd~~~~~~~-----------------~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 674 TLVSSSTDNTLKLWDLSMSISG-----------------INETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred EEEEEECCCEEEEEeCCCCccc-----------------cCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 8999999999999999752100 0123566788899999999998 78999999999999999
Q ss_pred CCCCCCCCCC--cccccc--ccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117 267 PKMKEQSPGE--GTADIL--QKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 320 (346)
Q Consensus 267 ~~~~~~~~~~--~~~~~~--~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~ 320 (346)
.......... .....+ .....+...|.+++|+|++ ..|++|+.||.|+||++
T Consensus 737 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~--~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 737 KAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS--STLVAANSTGNIKILEM 792 (793)
T ss_pred CCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC--CeEEEecCCCcEEEEec
Confidence 8755321000 000011 1123345679999999999 78999999999999996
No 70
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-30 Score=191.82 Aligned_cols=206 Identities=23% Similarity=0.428 Sum_probs=176.9
Q ss_pred CCccceEEEEEEEcCC-CCcEEEEeecCCeEEEEEccCc---ceeeee-ccCCCceEEEEEeCCCCceEEEeeCCCCEEE
Q 019117 81 DKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNE---KLHKSF-VGHGDSINEIRTQPLKPSLVVSASKDESVRL 155 (346)
Q Consensus 81 ~~~~~v~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~---~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i 155 (346)
.|.+.+..++|. |- |. .||+++.|..|++|+...+ .+...+ .+|+..|.+++|+| .+++|++++.|.++.|
T Consensus 12 gh~~r~W~~awh--p~~g~-ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 12 GHKDRVWSVAWH--PGKGV-ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASFDATVVI 87 (312)
T ss_pred CCCCcEEEEEec--cCCce-EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC-CCcEEEEeeccceEEE
Confidence 477789999987 66 77 9999999999999998753 233333 36999999999999 8999999999999999
Q ss_pred EecCCC--eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceece
Q 019117 156 WNVQTG--ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 233 (346)
Q Consensus 156 wd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (346)
|.-..+ +++..+. +|+..|.+++|++ ++++|++++.|+.|-||.+..... -...
T Consensus 88 w~k~~~efecv~~lE---GHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddE--------------------fec~ 143 (312)
T KOG0645|consen 88 WKKEDGEFECVATLE---GHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDE--------------------FECI 143 (312)
T ss_pred eecCCCceeEEeeee---ccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCc--------------------EEEE
Confidence 986543 5667777 8999999999998 999999999999999999985221 3456
Q ss_pred EEEeecccceEEEEecC--CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcC
Q 019117 234 FIASVHSNYVDCNRWLG--DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR 311 (346)
Q Consensus 234 ~~~~~~~~~i~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~ 311 (346)
..+..|...|..+.|++ .+|++++.|++|++|+-.... ...+.+++.+|...|++++|++.| ..|++++.
T Consensus 144 aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd------dW~c~~tl~g~~~TVW~~~F~~~G--~rl~s~sd 215 (312)
T KOG0645|consen 144 AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD------DWECVQTLDGHENTVWSLAFDNIG--SRLVSCSD 215 (312)
T ss_pred eeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCC------CeeEEEEecCccceEEEEEecCCC--ceEEEecC
Confidence 78899999999999995 899999999999999877432 455889999999999999999999 68999999
Q ss_pred CCcEEEEEcCC
Q 019117 312 EGKIFVWELQS 322 (346)
Q Consensus 312 dg~i~iwd~~~ 322 (346)
|+.++||...+
T Consensus 216 D~tv~Iw~~~~ 226 (312)
T KOG0645|consen 216 DGTVSIWRLYT 226 (312)
T ss_pred CcceEeeeecc
Confidence 99999999653
No 71
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.6e-32 Score=216.96 Aligned_cols=233 Identities=19% Similarity=0.341 Sum_probs=194.3
Q ss_pred cCCCccceEEEEEEEcC-CCCcEEEEeecCCeEEEEEccC-cceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEE
Q 019117 79 DEDKEESFYTVSWACNV-DGIPFLVAGGINGIIRVIDVSN-EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLW 156 (346)
Q Consensus 79 ~~~~~~~v~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iw 156 (346)
..+|...|.++.|. | .+. +|++++.|+.|+||++.. +++++++.+|..+|.+++|++ .+..|++++.|+.|++|
T Consensus 210 ~~gH~kgvsai~~f--p~~~h-LlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWF--PKKGH-LLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKLW 285 (503)
T ss_pred ccCCccccchhhhc--cceee-EEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeecceeeeee
Confidence 34588999999998 6 555 999999999999999876 889999999999999999999 89999999999999999
Q ss_pred ecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE
Q 019117 157 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 236 (346)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (346)
|+++|+++..+. ....++|+.|+|++.+.+++|+.|+.|+.||+++ +..+..+
T Consensus 286 DtETG~~~~~f~----~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs-----------------------~kvvqeY 338 (503)
T KOG0282|consen 286 DTETGQVLSRFH----LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS-----------------------GKVVQEY 338 (503)
T ss_pred ccccceEEEEEe----cCCCceeeecCCCCCcEEEEecCCCcEEEEeccc-----------------------hHHHHHH
Confidence 999999999997 6778999999996669999999999999999999 4456677
Q ss_pred eecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCC-------------------------------------c
Q 019117 237 SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE-------------------------------------G 277 (346)
Q Consensus 237 ~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~-------------------------------------~ 277 (346)
..|-+.|..+.|- +.++++.+.|++++||+.+..-..... -
T Consensus 339 d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~ 418 (503)
T KOG0282|consen 339 DRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF 418 (503)
T ss_pred HhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc
Confidence 7888999999997 889999999999999998765431110 0
Q ss_pred cccccccccCCC--cCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee-eeEEEEEecCCC
Q 019117 278 TADILQKYPVPE--CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI-CFSLHVKYNPQS 344 (346)
Q Consensus 278 ~~~~~~~~~~~~--~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~spdg 344 (346)
.......+.+|. +--..+.||||| .+|++|..||.+.+||.++-+.+...+.. +.+..+.|.|-.
T Consensus 419 r~nkkK~feGh~vaGys~~v~fSpDG--~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e 486 (503)
T KOG0282|consen 419 RLNKKKRFEGHSVAGYSCQVDFSPDG--RTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE 486 (503)
T ss_pred ccCHhhhhcceeccCceeeEEEcCCC--CeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCC
Confidence 111223344553 345678999999 79999999999999999998766655443 668889999854
No 72
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-31 Score=216.20 Aligned_cols=251 Identities=23% Similarity=0.370 Sum_probs=210.5
Q ss_pred CccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeecc-
Q 019117 48 YFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG- 126 (346)
Q Consensus 48 ~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~- 126 (346)
..+.||+|....|++|+..++........ ..+.|+++.|+ ++|. +|++|..+|.|.|||..+.+.+..+.+
T Consensus 187 s~n~laValg~~vylW~~~s~~v~~l~~~-----~~~~vtSv~ws--~~G~-~LavG~~~g~v~iwD~~~~k~~~~~~~~ 258 (484)
T KOG0305|consen 187 SANVLAVALGQSVYLWSASSGSVTELCSF-----GEELVTSVKWS--PDGS-HLAVGTSDGTVQIWDVKEQKKTRTLRGS 258 (484)
T ss_pred cCCeEEEEecceEEEEecCCCceEEeEec-----CCCceEEEEEC--CCCC-EEEEeecCCeEEEEehhhccccccccCC
Confidence 36799999888899999888775444432 36788888888 9999 999999999999999999999999998
Q ss_pred CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEE-ecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEcc
Q 019117 127 HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI-FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 205 (346)
Q Consensus 127 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 205 (346)
|...|.+++|+ ...+.+|+.|+.|..+|++..+.... +. +|...|..+.|++ ++.++++|+.|+.+.|||..
T Consensus 259 h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~---~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~ 331 (484)
T KOG0305|consen 259 HASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQ---GHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGL 331 (484)
T ss_pred cCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhh---cccceeeeeEECC-CCCeeccCCCccceEeccCC
Confidence 99999999996 47999999999999999998876666 55 7999999999998 99999999999999999996
Q ss_pred ccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEee--cCeEEEEcCCCCCCCCCCcccc
Q 019117 206 EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSV--DNEIVLWEPKMKEQSPGEGTAD 280 (346)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~ 280 (346)
. ..+...+..|...|.+++|+ ..+||+|+. |+.|++||..+++
T Consensus 332 ~-----------------------~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~--------- 379 (484)
T KOG0305|consen 332 S-----------------------PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA--------- 379 (484)
T ss_pred C-----------------------ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc---------
Confidence 6 56788999999999999999 779999865 9999999999887
Q ss_pred ccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce-eeeeeeeEEEEEecCCCCC
Q 019117 281 ILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL-IARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 281 ~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~spdg~~ 346 (346)
.+..... ...|..|.|++..++-....|..++.|.||+..+.+++. ...+...+..+++||||.+
T Consensus 380 ~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~ 445 (484)
T KOG0305|consen 380 RIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGET 445 (484)
T ss_pred Eeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCE
Confidence 4444433 458999999999853233335578899999999966544 3345556899999999863
No 73
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-31 Score=200.29 Aligned_cols=273 Identities=16% Similarity=0.268 Sum_probs=231.2
Q ss_pred cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (346)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (346)
-.+++.+.|.||++.|+.++-.. ...++.+++.|. -+||.++++.++..+.+ |.+.|.++.|. +.+.
T Consensus 136 ~~~~lvre~~GHkDGiW~Vaa~~----tqpi~gtASADhTA~iWs~Esg~CL~~Y~G-----H~GSVNsikfh--~s~~- 203 (481)
T KOG0300|consen 136 VKFRLVRELEGHKDGIWHVAADS----TQPICGTASADHTARIWSLESGACLATYTG-----HTGSVNSIKFH--NSGL- 203 (481)
T ss_pred eeEeehhhhcccccceeeehhhc----CCcceeecccccceeEEeeccccceeeecc-----cccceeeEEec--cccc-
Confidence 46778888999999999999876 456999999998 99999999999888875 78889999887 7787
Q ss_pred EEEEeecCCeEEEEEcc------C----------------------------------cceeeeeccCCCceEEEEEeCC
Q 019117 100 FLVAGGINGIIRVIDVS------N----------------------------------EKLHKSFVGHGDSINEIRTQPL 139 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~------~----------------------------------~~~~~~~~~~~~~v~~~~~~~~ 139 (346)
++++++.|++-.||... . ..++..+.+|.+.|.+..|..
T Consensus 204 L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~- 282 (481)
T KOG0300|consen 204 LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA- 282 (481)
T ss_pred eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-
Confidence 99999999999999721 0 013456778999999999998
Q ss_pred CCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecC
Q 019117 140 KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD 219 (346)
Q Consensus 140 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 219 (346)
+++.+++++.|.+-.+||+++++.+..+. +|....+.++-+| ..+++++++.|.+.++||++..
T Consensus 283 gg~Q~vTaSWDRTAnlwDVEtge~v~~Lt---GHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFRea------------ 346 (481)
T KOG0300|consen 283 GGQQMVTASWDRTANLWDVETGEVVNILT---GHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREA------------ 346 (481)
T ss_pred CcceeeeeeccccceeeeeccCceecccc---CcchhccccccCC-cceEEEEeccCceeEeccchhh------------
Confidence 99999999999999999999999999999 8999999999999 8999999999999999999971
Q ss_pred CCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEe
Q 019117 220 LPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS 298 (346)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 298 (346)
...+..+.+|.+.|+++.|. +..+++|+.|.+|++||+++.+. ++.++.. ..++..++.+
T Consensus 347 ----------I~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRs--------plATIRt-dS~~NRvavs 407 (481)
T KOG0300|consen 347 ----------IQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRS--------PLATIRT-DSPANRVAVS 407 (481)
T ss_pred ----------cceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccC--------cceeeec-CCccceeEee
Confidence 34567889999999999999 99999999999999999998762 5555544 3578889999
Q ss_pred ecCCcceEEEEcCCCcEEEEEcCCCCcceee-----eeeeeEEEEEecCC
Q 019117 299 CDFHYNAAAIGNREGKIFVWELQSSPPVLIA-----RLICFSLHVKYNPQ 343 (346)
Q Consensus 299 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~spd 343 (346)
..+ .+++.--.+..|++||+......... .+...+.|++|.-+
T Consensus 408 ~g~--~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~ee 455 (481)
T KOG0300|consen 408 KGH--PIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEE 455 (481)
T ss_pred cCC--ceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeecccc
Confidence 877 68999999999999999876643322 22334788998754
No 74
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.3e-32 Score=205.54 Aligned_cols=254 Identities=17% Similarity=0.204 Sum_probs=207.7
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeec---CCCccceEEEEEEEcCCCCcEEEEee
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVD---EDKEESFYTVSWACNVDGIPFLVAGG 105 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~l~~~~ 105 (346)
.+.++.+-|..||| ||++|++|+-|+ |.+||..+|+..+.++-... -.++..|.|++|+ .|.. .|++|+
T Consensus 210 Fg~KSh~EcA~FSP----DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FS--RDsE-MlAsGs 282 (508)
T KOG0275|consen 210 FGQKSHVECARFSP----DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFS--RDSE-MLASGS 282 (508)
T ss_pred cccccchhheeeCC----CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeec--ccHH-HhhccC
Confidence 35567788999999 899999999999 99999999887665542211 1256778777665 8888 999999
Q ss_pred cCCeEEEEEccCcceeeeec-cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecC
Q 019117 106 INGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP 184 (346)
Q Consensus 106 ~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 184 (346)
.||.|++|.+.+|.+++.+. +|+..|+++.|+. ++..+++++.|.++++--+.+|++++.++ +|.+.|+...|.+
T Consensus 283 qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfr---GHsSyvn~a~ft~ 358 (508)
T KOG0275|consen 283 QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFR---GHSSYVNEATFTD 358 (508)
T ss_pred cCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhc---CccccccceEEcC
Confidence 99999999999999999987 8999999999999 88899999999999999999999999999 8999999999998
Q ss_pred CCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe--ecccceEEEEec---CCEEEEEeec
Q 019117 185 SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS--VHSNYVDCNRWL---GDFILSKSVD 259 (346)
Q Consensus 185 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~---~~~l~~~~~d 259 (346)
+|..+++++.||+|++|+..+.. ++.++. +....|.++..- +..++++...
T Consensus 359 -dG~~iisaSsDgtvkvW~~Ktte-----------------------C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrs 414 (508)
T KOG0275|consen 359 -DGHHIISASSDGTVKVWHGKTTE-----------------------CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRS 414 (508)
T ss_pred -CCCeEEEecCCccEEEecCcchh-----------------------hhhhccCCCCcccceeEEEcCCCCceEEEEcCC
Confidence 99999999999999999998832 222221 223344444443 6789999999
Q ss_pred CeEEEEcCCCCCCCCCCccccccccccC---CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee
Q 019117 260 NEIVLWEPKMKEQSPGEGTADILQKYPV---PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR 330 (346)
Q Consensus 260 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (346)
++|.|.++... .++.+.. ..+...+.+.||.| .++.+.++|+.++.|.+.+|+......
T Consensus 415 ntv~imn~qGQ----------vVrsfsSGkREgGdFi~~~lSpkG--ewiYcigED~vlYCF~~~sG~LE~tl~ 476 (508)
T KOG0275|consen 415 NTVYIMNMQGQ----------VVRSFSSGKREGGDFINAILSPKG--EWIYCIGEDGVLYCFSVLSGKLERTLP 476 (508)
T ss_pred CeEEEEeccce----------EEeeeccCCccCCceEEEEecCCC--cEEEEEccCcEEEEEEeecCceeeeee
Confidence 99999998753 3444432 24567778899999 799999999999999999998655443
No 75
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-31 Score=215.48 Aligned_cols=242 Identities=17% Similarity=0.276 Sum_probs=207.7
Q ss_pred CCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeE
Q 019117 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII 110 (346)
Q Consensus 32 h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 110 (346)
+.+.|+++.|++ +|.+||+|..++ |.|||..+.+.+..+... |...|.+++|. +. .+.+|+.++.|
T Consensus 216 ~~~~vtSv~ws~----~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~----h~~rvg~laW~----~~-~lssGsr~~~I 282 (484)
T KOG0305|consen 216 GEELVTSVKWSP----DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS----HASRVGSLAWN----SS-VLSSGSRDGKI 282 (484)
T ss_pred CCCceEEEEECC----CCCEEEEeecCCeEEEEehhhccccccccCC----cCceeEEEecc----Cc-eEEEecCCCcE
Confidence 388999999999 899999999999 999999888887777643 78889999996 33 89999999999
Q ss_pred EEEEccCcceeee-eccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcE
Q 019117 111 RVIDVSNEKLHKS-FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR 189 (346)
Q Consensus 111 ~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 189 (346)
..+|++..+.... +.+|...|..++|++ ++.++++|+.|+.+.|||....+++..+. .|..+|.+++|+|....+
T Consensus 283 ~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~---~H~aAVKA~awcP~q~~l 358 (484)
T KOG0305|consen 283 LNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFT---EHTAAVKALAWCPWQSGL 358 (484)
T ss_pred EEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEe---ccceeeeEeeeCCCccCc
Confidence 9999998875544 889999999999999 99999999999999999998888888888 799999999999988899
Q ss_pred EEEEe--cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--C-CEEEEEe-ecCeEE
Q 019117 190 IASCG--MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--G-DFILSKS-VDNEIV 263 (346)
Q Consensus 190 l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~-~d~~i~ 263 (346)
|++|+ .|+.|++||..++ ..+... .....|.+|.|+ . +++.+-+ .++.|.
T Consensus 359 LAsGGGs~D~~i~fwn~~~g-----------------------~~i~~v-dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~ 414 (484)
T KOG0305|consen 359 LATGGGSADRCIKFWNTNTG-----------------------ARIDSV-DTGSQVCSLIWSKKYKELLSTHGYSENQIT 414 (484)
T ss_pred eEEcCCCcccEEEEEEcCCC-----------------------cEeccc-ccCCceeeEEEcCCCCEEEEecCCCCCcEE
Confidence 99975 5899999999983 223333 245679999999 3 3444433 377899
Q ss_pred EEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCc
Q 019117 264 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP 325 (346)
Q Consensus 264 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~ 325 (346)
||+..+.+ .+..+.+|...|..++++||+ ..+++|+.|.++++|++-+..+
T Consensus 415 lw~~ps~~---------~~~~l~gH~~RVl~la~SPdg--~~i~t~a~DETlrfw~~f~~~~ 465 (484)
T KOG0305|consen 415 LWKYPSMK---------LVAELLGHTSRVLYLALSPDG--ETIVTGAADETLRFWNLFDERP 465 (484)
T ss_pred EEeccccc---------eeeeecCCcceeEEEEECCCC--CEEEEecccCcEEeccccCCCC
Confidence 99999866 788999999999999999999 7899999999999999988543
No 76
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=4.9e-32 Score=197.13 Aligned_cols=266 Identities=13% Similarity=0.202 Sum_probs=220.1
Q ss_pred cccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (346)
Q Consensus 29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 107 (346)
-.||..+|-.++|||.-| +|-+|++++.|+ =.+-+-.+|.-+.++.+ |.+.|+..++. .+.. ..++++.|
T Consensus 10 c~ghtrpvvdl~~s~itp-~g~flisa~kd~~pmlr~g~tgdwigtfeg-----hkgavw~~~l~--~na~-~aasaaad 80 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITP-DGYFLISASKDGKPMLRNGDTGDWIGTFEG-----HKGAVWSATLN--KNAT-RAASAAAD 80 (334)
T ss_pred EcCCCcceeEEeccCCCC-CceEEEEeccCCCchhccCCCCCcEEeeec-----cCcceeeeecC--chhh-hhhhhccc
Confidence 479999999999999655 899999999998 55666667887777765 78888887775 5555 78899999
Q ss_pred CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe-eEEEecccCCCCcceEEEEecCCC
Q 019117 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-CILIFAGAGGHRNEVLSVDFHPSD 186 (346)
Q Consensus 108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~ 186 (346)
-+-++||.-+|..+..+. |.-.|..++|+. +.++|++|+.+..++|||++..+ +..++. +|.+.|+.+.|.. .
T Consensus 81 ftakvw~a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~---ghtg~Ir~v~wc~-e 154 (334)
T KOG0278|consen 81 FTAKVWDAVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEIS---GHTGGIRTVLWCH-E 154 (334)
T ss_pred chhhhhhhhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhc---CCCCcceeEEEec-c
Confidence 999999999999999887 889999999999 89999999999999999997654 344555 8999999999997 7
Q ss_pred CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEE
Q 019117 187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLW 265 (346)
Q Consensus 187 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iw 265 (346)
.+.+++++.|++||+||.+++ ..+.++. -+..|+++.++ ...+++-...+.|.+|
T Consensus 155 D~~iLSSadd~tVRLWD~rTg-----------------------t~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fw 210 (334)
T KOG0278|consen 155 DKCILSSADDKTVRLWDHRTG-----------------------TEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFW 210 (334)
T ss_pred CceEEeeccCCceEEEEeccC-----------------------cEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEe
Confidence 888999899999999999993 3344443 34567888887 4455666677889999
Q ss_pred cCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee--eeeeeEEEEEecCC
Q 019117 266 EPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA--RLICFSLHVKYNPQ 343 (346)
Q Consensus 266 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~spd 343 (346)
|.++.. ++..+..+ ..|.+..++|+. ..+++|++|..++.||..+++-+..+ .+.+++.++.|+||
T Consensus 211 daksf~---------~lKs~k~P-~nV~SASL~P~k--~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPd 278 (334)
T KOG0278|consen 211 DAKSFG---------LLKSYKMP-CNVESASLHPKK--EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPD 278 (334)
T ss_pred cccccc---------ceeeccCc-cccccccccCCC--ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCC
Confidence 999876 56666654 478899999998 68999999999999999999866653 45677999999999
Q ss_pred CC
Q 019117 344 SV 345 (346)
Q Consensus 344 g~ 345 (346)
|.
T Consensus 279 GE 280 (334)
T KOG0278|consen 279 GE 280 (334)
T ss_pred Cc
Confidence 95
No 77
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=1.4e-29 Score=214.76 Aligned_cols=249 Identities=14% Similarity=0.139 Sum_probs=181.8
Q ss_pred ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCcee----eeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI----AALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (346)
Q Consensus 28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 102 (346)
.+.+|.+.|++++|+|. ++.+||+++.|+ |++||+.++... ..+..+ ..|...|.+++|. |++.++|+
T Consensus 70 ~l~GH~~~V~~v~fsP~---d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L--~gH~~~V~~l~f~--P~~~~iLa 142 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPF---DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL--QGHTKKVGIVSFH--PSAMNVLA 142 (493)
T ss_pred eEeCCCCCEEEEEEcCC---CCCEEEEEeCCCEEEEEecCCCccccccCcceEEe--cCCCCcEEEEEeC--cCCCCEEE
Confidence 46899999999999983 357999999999 999998765321 112222 2377889888887 76544999
Q ss_pred EeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcc-eEEEE
Q 019117 103 AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE-VLSVD 181 (346)
Q Consensus 103 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-v~~~~ 181 (346)
+++.|++|+|||+.+++.+..+.+|...|.+++|+| ++.+|++++.|++|++||+++++.+..+. +|.+. +..+.
T Consensus 143 Sgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~---~H~~~~~~~~~ 218 (493)
T PTZ00421 143 SAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVE---AHASAKSQRCL 218 (493)
T ss_pred EEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEe---cCCCCcceEEE
Confidence 999999999999999999999999999999999999 89999999999999999999999888887 67654 45677
Q ss_pred ecCCCCcEEEEEe----cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc-cceEEEEec--CCEEE
Q 019117 182 FHPSDIYRIASCG----MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS-NYVDCNRWL--GDFIL 254 (346)
Q Consensus 182 ~~~~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~--~~~l~ 254 (346)
|.+ ++..+++++ .|+.|++||+++... ++.....+. ..+....|+ +++|+
T Consensus 219 w~~-~~~~ivt~G~s~s~Dr~VklWDlr~~~~----------------------p~~~~~~d~~~~~~~~~~d~d~~~L~ 275 (493)
T PTZ00421 219 WAK-RKDLIITLGCSKSQQRQIMLWDTRKMAS----------------------PYSTVDLDQSSALFIPFFDEDTNLLY 275 (493)
T ss_pred EcC-CCCeEEEEecCCCCCCeEEEEeCCCCCC----------------------ceeEeccCCCCceEEEEEcCCCCEEE
Confidence 888 666666654 478999999987321 222222222 234444555 77888
Q ss_pred EEe-ecCeEEEEcCCCCCCCCCCccccccccccC-CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117 255 SKS-VDNEIVLWEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (346)
Q Consensus 255 ~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (346)
+++ .|+.|++||+.+++. +..... ...++..++|.|.. .+-...--..++|.+...
T Consensus 276 lggkgDg~Iriwdl~~~~~---------~~~~~~~s~~~~~g~~~~pk~----~~dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 276 IGSKGEGNIRCFELMNERL---------TFCSSYSSVEPHKGLCMMPKW----SLDTRKCEIARFYALTYH 333 (493)
T ss_pred EEEeCCCeEEEEEeeCCce---------EEEeeccCCCCCcceEecccc----cccccceeeeEEEEecCC
Confidence 887 499999999998762 222222 33467788888854 222222234466766543
No 78
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=4.4e-30 Score=191.76 Aligned_cols=274 Identities=11% Similarity=0.158 Sum_probs=204.2
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccC-ceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG-GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 107 (346)
..-.+.|.+|+|||. ...+++.++-|+ |++|++... ...... ...+.++|.+++|+ .||. .+++|+.|
T Consensus 24 ~pP~DsIS~l~FSP~---~~~~~~A~SWD~tVR~wevq~~g~~~~ka----~~~~~~PvL~v~Ws--ddgs-kVf~g~~D 93 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQ---ADNLLAAGSWDGTVRIWEVQNSGQLVPKA----QQSHDGPVLDVCWS--DDGS-KVFSGGCD 93 (347)
T ss_pred CCcccchheeEeccc---cCceEEecccCCceEEEEEecCCcccchh----hhccCCCeEEEEEc--cCCc-eEEeeccC
Confidence 345788999999992 456777788777 999999874 332211 12378899989888 8887 99999999
Q ss_pred CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCc--eEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCC
Q 019117 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS--LVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS 185 (346)
Q Consensus 108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 185 (346)
+.+++||+.+++ +..+..|.++|..+.|-+ ... .|++||.|.+|+.||.+...++..+. ..+.++++..-
T Consensus 94 k~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~----LPeRvYa~Dv~-- 165 (347)
T KOG0647|consen 94 KQAKLWDLASGQ-VSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ----LPERVYAADVL-- 165 (347)
T ss_pred CceEEEEccCCC-eeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeee----ccceeeehhcc--
Confidence 999999999995 566777999999999988 555 89999999999999999999999987 77888888764
Q ss_pred CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEE
Q 019117 186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIV 263 (346)
Q Consensus 186 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~ 263 (346)
..+++.+..++.|.+|++++........ ...-.-.++|++.. .+..+.|+-+|.+-
T Consensus 166 -~pm~vVata~r~i~vynL~n~~te~k~~---------------------~SpLk~Q~R~va~f~d~~~~alGsiEGrv~ 223 (347)
T KOG0647|consen 166 -YPMAVVATAERHIAVYNLENPPTEFKRI---------------------ESPLKWQTRCVACFQDKDGFALGSIEGRVA 223 (347)
T ss_pred -CceeEEEecCCcEEEEEcCCCcchhhhh---------------------cCcccceeeEEEEEecCCceEeeeecceEE
Confidence 3578888899999999998733211110 00012234555544 56679999999999
Q ss_pred EEcCCCCCCCCCCcccccccc---ccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCccee-eeeeeeEEEEE
Q 019117 264 LWEPKMKEQSPGEGTADILQK---YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI-ARLICFSLHVK 339 (346)
Q Consensus 264 iwd~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~ 339 (346)
|..++...+...... .+-+. ....-..|.+++|+|.. ..|++.+.||.+.+||-.....+.. ..+...+++..
T Consensus 224 iq~id~~~~~~nFtF-kCHR~~~~~~~~VYaVNsi~FhP~h--gtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~ 300 (347)
T KOG0647|consen 224 IQYIDDPNPKDNFTF-KCHRSTNSVNDDVYAVNSIAFHPVH--GTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCS 300 (347)
T ss_pred EEecCCCCccCceeE-EEeccCCCCCCceEEecceEeeccc--ceEEEecCCceEEEecchhhhhhhccCcCCCccceeE
Confidence 999988643111110 01111 01112368889999976 6899999999999999887665554 56677899999
Q ss_pred ecCCCCC
Q 019117 340 YNPQSVY 346 (346)
Q Consensus 340 ~spdg~~ 346 (346)
|+.+|.+
T Consensus 301 fn~~G~i 307 (347)
T KOG0647|consen 301 FNRNGSI 307 (347)
T ss_pred ecCCCCE
Confidence 9999974
No 79
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=1.6e-31 Score=204.22 Aligned_cols=251 Identities=14% Similarity=0.242 Sum_probs=204.7
Q ss_pred eeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117 24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (346)
Q Consensus 24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 102 (346)
..+..|.||.+.|.|++=+|. .-..+|+|+.|| |+|||+....+...+.. |.+.|..+++.. . .++
T Consensus 57 PFv~~L~gHrdGV~~lakhp~---~ls~~aSGs~DG~VkiWnlsqR~~~~~f~A-----H~G~V~Gi~v~~----~-~~~ 123 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPN---KLSTVASGSCDGEVKIWNLSQRECIRTFKA-----HEGLVRGICVTQ----T-SFF 123 (433)
T ss_pred cchhhccccccccchhhcCcc---hhhhhhccccCceEEEEehhhhhhhheeec-----ccCceeeEEecc----c-ceE
Confidence 345677999999999999982 236899999999 99999999888888875 677788888763 2 677
Q ss_pred EeecCCeEEEEEcc--------------------------------------CcceeeeeccCCCceEEEEEeCCCCceE
Q 019117 103 AGGINGIIRVIDVS--------------------------------------NEKLHKSFVGHGDSINEIRTQPLKPSLV 144 (346)
Q Consensus 103 ~~~~dg~i~iwd~~--------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l 144 (346)
+++.|.+|+.|.+. ...+++.+.--.+.|.++.|+|.....|
T Consensus 124 tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsIL 203 (433)
T KOG0268|consen 124 TVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSIL 203 (433)
T ss_pred EecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchhe
Confidence 88888888888632 1123333333446788999999888889
Q ss_pred EEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCC
Q 019117 145 VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF 224 (346)
Q Consensus 145 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 224 (346)
++++.|+.|.+||++++.+++.+. ..-.-+.++|+| +...+++++.|..+..||++..
T Consensus 204 as~~sDrsIvLyD~R~~~Pl~KVi----~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l----------------- 261 (433)
T KOG0268|consen 204 ASCASDRSIVLYDLRQASPLKKVI----LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNL----------------- 261 (433)
T ss_pred eeeccCCceEEEecccCCccceee----eeccccceecCc-cccceeeccccccceehhhhhh-----------------
Confidence 999999999999999999988876 566778999999 8889999999999999999984
Q ss_pred CCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCC
Q 019117 225 PTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH 302 (346)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 302 (346)
..++.....|...|.+++|+ |+-+++||.|.+|+||..+.+.. .+...+- .-..|.++.||.|.
T Consensus 262 -----~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S------RdiYhtk--RMq~V~~Vk~S~Ds- 327 (433)
T KOG0268|consen 262 -----SRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS------RDIYHTK--RMQHVFCVKYSMDS- 327 (433)
T ss_pred -----cccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcc------hhhhhHh--hhheeeEEEEeccc-
Confidence 45777888999999999999 99999999999999999988752 1111111 12478999999999
Q ss_pred cceEEEEcCCCcEEEEEcCCCC
Q 019117 303 YNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 303 ~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
.++++||+|+.|++|.....+
T Consensus 328 -kyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 328 -KYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred -cEEEecCCCcceeeeecchhh
Confidence 799999999999999887654
No 80
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.98 E-value=7.5e-30 Score=187.43 Aligned_cols=228 Identities=14% Similarity=0.185 Sum_probs=201.9
Q ss_pred CCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC
Q 019117 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160 (346)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 160 (346)
.|+.+++.+.+. .+|. +|.+++.|.+..+|-..+|+.+.++.+|++.|+++.... +...+++|+.|.++++||+++
T Consensus 8 GHERplTqiKyN--~eGD-LlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 8 GHERPLTQIKYN--REGD-LLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred cCccccceEEec--CCCc-EEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCC
Confidence 377888888776 8898 999999999999999989999999999999999999998 889999999999999999999
Q ss_pred CeeEEEecccCCCCcceEEEEecCCCCcEEEEEec-----CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEE
Q 019117 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-----DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 235 (346)
Q Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (346)
|+.+..++ ...+|..+.|++ ++++++.+.. .+.|.++|++..... .....|...
T Consensus 84 Gk~la~~k----~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~----------------~~s~ep~~k 142 (327)
T KOG0643|consen 84 GKQLATWK----TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSD----------------IDSEEPYLK 142 (327)
T ss_pred CcEEEEee----cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhh----------------hcccCceEE
Confidence 99999997 788999999998 8887776643 468999999963211 112456778
Q ss_pred EeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCC
Q 019117 236 ASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG 313 (346)
Q Consensus 236 ~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg 313 (346)
+..+...++..-|. +++|++|..||.|.+||+++++. .+.....|...|+.+.+++|. .++++++.|.
T Consensus 143 I~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~--------~v~s~~~h~~~Ind~q~s~d~--T~FiT~s~Dt 212 (327)
T KOG0643|consen 143 IPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE--------LVDSDEEHSSKINDLQFSRDR--TYFITGSKDT 212 (327)
T ss_pred ecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce--------eeechhhhccccccccccCCc--ceEEecccCc
Confidence 88888999999998 89999999999999999999863 666667788899999999999 7999999999
Q ss_pred cEEEEEcCCCCcceeeeeeeeEEEEEecCC
Q 019117 314 KIFVWELQSSPPVLIARLICFSLHVKYNPQ 343 (346)
Q Consensus 314 ~i~iwd~~~~~~~~~~~~~~~~~~~~~spd 343 (346)
+-++||+.+-+.+..+....++++.+++|-
T Consensus 213 takl~D~~tl~v~Kty~te~PvN~aaisP~ 242 (327)
T KOG0643|consen 213 TAKLVDVRTLEVLKTYTTERPVNTAAISPL 242 (327)
T ss_pred cceeeeccceeeEEEeeecccccceecccc
Confidence 999999999999999999999999999994
No 81
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.4e-31 Score=220.58 Aligned_cols=231 Identities=18% Similarity=0.279 Sum_probs=184.0
Q ss_pred CCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccC-------------------------------------------
Q 019117 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN------------------------------------------- 117 (346)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------------------------------------------- 117 (346)
.|.+.|+++.|+ +||+ |||+|+.||.|+||.+..
T Consensus 265 ah~gaIw~mKFS--~DGK-yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 265 AHKGAIWAMKFS--HDGK-YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred ccCCcEEEEEeC--CCCc-eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 588999999887 9999 999999999999998744
Q ss_pred -----------------cceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117 118 -----------------EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180 (346)
Q Consensus 118 -----------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 180 (346)
.++++.+.+|.+.|.++.|+. .++|++++.|.+|++|++...+++..|. |...|+|+
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~----HndfVTcV 415 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFS----HNDFVTCV 415 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEe----cCCeeEEE
Confidence 022456688999999999996 6899999999999999999999999997 99999999
Q ss_pred EecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEee
Q 019117 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV 258 (346)
Q Consensus 181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~ 258 (346)
+|+|.+.+++++|+-|+.|+||++... .+.-...-.+-|++++|. |++.++|+.
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~------------------------~Vv~W~Dl~~lITAvcy~PdGk~avIGt~ 471 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDK------------------------KVVDWNDLRDLITAVCYSPDGKGAVIGTF 471 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcC------------------------eeEeehhhhhhheeEEeccCCceEEEEEe
Confidence 999999999999999999999999872 222333334789999998 999999999
Q ss_pred cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee---eeE
Q 019117 259 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI---CFS 335 (346)
Q Consensus 259 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~ 335 (346)
+|.+++|+....+.......... ..-+.....|+++.|.|... ..+++.+.|..|+|+|..+.+++..++-. ...
T Consensus 472 ~G~C~fY~t~~lk~~~~~~I~~~-~~Kk~~~~rITG~Q~~p~~~-~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ 549 (712)
T KOG0283|consen 472 NGYCRFYDTEGLKLVSDFHIRLH-NKKKKQGKRITGLQFFPGDP-DEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQ 549 (712)
T ss_pred ccEEEEEEccCCeEEEeeeEeec-cCccccCceeeeeEecCCCC-CeEEEecCCCceEEEeccchhhhhhhcccccCCcc
Confidence 99999999988764222111100 11111123899999998765 46778889999999999887766554421 113
Q ss_pred EEEEecCCCCC
Q 019117 336 LHVKYNPQSVY 346 (346)
Q Consensus 336 ~~~~~spdg~~ 346 (346)
....|+.||+|
T Consensus 550 ~~Asfs~Dgk~ 560 (712)
T KOG0283|consen 550 ISASFSSDGKH 560 (712)
T ss_pred eeeeEccCCCE
Confidence 56888899886
No 82
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=9e-30 Score=198.94 Aligned_cols=253 Identities=15% Similarity=0.247 Sum_probs=208.5
Q ss_pred ccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117 20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI 98 (346)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (346)
.+.-+.+..|+||...|+.+.|+| +...+++++.|. |+||............. |.++|+.+... |.|.
T Consensus 248 ~~s~q~l~~~~Gh~kki~~v~~~~----~~~~v~~aSad~~i~vws~~~~s~~~~~~~-----h~~~V~~ls~h--~tge 316 (506)
T KOG0289|consen 248 KPSNQILATLKGHTKKITSVKFHK----DLDTVITASADEIIRVWSVPLSSEPTSSRP-----HEEPVTGLSLH--PTGE 316 (506)
T ss_pred cchhhhhhhccCcceEEEEEEecc----chhheeecCCcceEEeeccccccCcccccc-----ccccceeeeec--cCCc
Confidence 345567788899999999999999 678899999998 99999876665444443 78888888776 8898
Q ss_pred cEEEEeecCCeEEEEEccCcceeeeecc--CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcc
Q 019117 99 PFLVAGGINGIIRVIDVSNEKLHKSFVG--HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE 176 (346)
Q Consensus 99 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 176 (346)
||++++.|++....|+.++..+..... ..-.+++.+|+| ++.+|.+|..|+.|++||+.++..+..|. +|.++
T Consensus 317 -YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fp---ght~~ 391 (506)
T KOG0289|consen 317 -YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFP---GHTGP 391 (506)
T ss_pred -EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCC---CCCCc
Confidence 999999999999999999998776653 234689999999 99999999999999999999999898998 89999
Q ss_pred eEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEE
Q 019117 177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL 254 (346)
Q Consensus 177 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~ 254 (346)
|..++|+. +|.+|+++..|+.|++||+|..+. .+...+. ....+.++.|+ |.+|+
T Consensus 392 vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n---------------------~kt~~l~-~~~~v~s~~fD~SGt~L~ 448 (506)
T KOG0289|consen 392 VKAISFSE-NGYWLATAADDGSVKLWDLRKLKN---------------------FKTIQLD-EKKEVNSLSFDQSGTYLG 448 (506)
T ss_pred eeEEEecc-CceEEEEEecCCeEEEEEehhhcc---------------------cceeecc-ccccceeEEEcCCCCeEE
Confidence 99999996 999999999999999999998431 1111222 12368888887 99999
Q ss_pred EEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117 255 SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 320 (346)
Q Consensus 255 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~ 320 (346)
.++.|=.|++++-.+.. ...+..+..|.+..+.+.|..+. .++++++.|..++++.+
T Consensus 449 ~~g~~l~Vy~~~k~~k~-------W~~~~~~~~~sg~st~v~Fg~~a--q~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 449 IAGSDLQVYICKKKTKS-------WTEIKELADHSGLSTGVRFGEHA--QYLASTSMDAILRLYAL 505 (506)
T ss_pred eecceeEEEEEeccccc-------ceeeehhhhcccccceeeecccc--eEEeeccchhheEEeec
Confidence 99888777777754432 33667777788889999999888 69999999999888764
No 83
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=6.2e-29 Score=211.89 Aligned_cols=235 Identities=13% Similarity=0.154 Sum_probs=174.3
Q ss_pred eeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCce-ee----eEeeeecCCCccceEEEEEEEcCCC
Q 019117 24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV-IA----ALQSYVDEDKEESFYTVSWACNVDG 97 (346)
Q Consensus 24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~-~~----~~~~~~~~~~~~~v~~~~~~~~~~~ 97 (346)
.....+.+|.++|.+++|+|. ++.+||+|+.|+ |+|||+.++.. .. .+..+ ..|...|.+++|. |++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~---~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L--~gH~~~V~sVaf~--P~g 137 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPC---FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL--KGHKKKISIIDWN--PMN 137 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCC---CCCEEEEEeCCCeEEEEECCCCCccccccccceEEe--ecCCCcEEEEEEC--CCC
Confidence 456678999999999999992 268999999999 99999876432 11 11111 2377889888887 877
Q ss_pred CcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcce
Q 019117 98 IPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV 177 (346)
Q Consensus 98 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 177 (346)
..+|++++.|++|+|||+.+++.+..+. |...|.+++|+| ++.+|++++.|+.|+|||+++++.+..+. +|.+.+
T Consensus 138 ~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~---gH~g~~ 212 (568)
T PTZ00420 138 YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFH---IHDGGK 212 (568)
T ss_pred CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEe---cccCCc
Confidence 7467899999999999999998777776 667899999999 89999999999999999999999998887 787765
Q ss_pred EEE-----EecCCCCcEEEEEecCC----eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee--cccceEEE
Q 019117 178 LSV-----DFHPSDIYRIASCGMDN----TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV--HSNYVDCN 246 (346)
Q Consensus 178 ~~~-----~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~ 246 (346)
... .|++ ++.++++++.|+ .|++||++... .++..... +...+...
T Consensus 213 ~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~----------------------~pl~~~~ld~~~~~L~p~ 269 (568)
T PTZ00420 213 NTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTT----------------------SALVTMSIDNASAPLIPH 269 (568)
T ss_pred eeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCC----------------------CceEEEEecCCccceEEe
Confidence 432 3456 777888887764 79999999622 22322222 22222222
Q ss_pred Eec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecC
Q 019117 247 RWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF 301 (346)
Q Consensus 247 ~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 301 (346)
... +.++++|+.|++|++|++..+.. ..+..+. +..+..+++|.|..
T Consensus 270 ~D~~tg~l~lsGkGD~tIr~~e~~~~~~-------~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 270 YDESTGLIYLIGKGDGNCRYYQHSLGSI-------RKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred eeCCCCCEEEEEECCCeEEEEEccCCcE-------Eeecccc-cCCCccceEEcccc
Confidence 112 77899999999999999976531 1233333 45678889999975
No 84
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=4.4e-30 Score=211.63 Aligned_cols=267 Identities=19% Similarity=0.253 Sum_probs=218.1
Q ss_pred cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEE-EEEEEcCCCC
Q 019117 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYT-VSWACNVDGI 98 (346)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~ 98 (346)
..|++.+.+.||...|..+++.+ +..+++++.|+ +++|+-...+.+.... + ..+.+-+.. +++.. .++.
T Consensus 2 ~~Y~ls~~l~gH~~DVr~v~~~~-----~~~i~s~sRd~t~~vw~~~~~~~l~~~~-~--~~~~g~i~~~i~y~e-~~~~ 72 (745)
T KOG0301|consen 2 PQYKLSHELEGHKSDVRAVAVTD-----GVCIISGSRDGTVKVWAKKGKQYLETHA-F--EGPKGFIANSICYAE-SDKG 72 (745)
T ss_pred CcceeEEEeccCccchheeEecC-----CeEEeecCCCCceeeeeccCccccccee-c--ccCcceeeccceecc-ccCc
Confidence 35788999999999999999875 56889999888 9999965444333211 1 224444444 55553 2333
Q ss_pred cEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceE
Q 019117 99 PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 178 (346)
Q Consensus 99 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 178 (346)
.+++|+.|.+|.+|...+..+...+++|...|.++.... ++. +++||.|.++++|.. +++...+. +|+..|.
T Consensus 73 -~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~---gH~asVW 144 (745)
T KOG0301|consen 73 -RLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQ---GHTASVW 144 (745)
T ss_pred -ceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccC---Ccchhee
Confidence 699999999999999999999999999999999999876 444 999999999999976 56666677 8999999
Q ss_pred EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEe
Q 019117 179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKS 257 (346)
Q Consensus 179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~ 257 (346)
+++.-| +. .++||+.|.+|++|.-.. .+.++.+|.+.|+.+++- ...+++++
T Consensus 145 Av~~l~-e~-~~vTgsaDKtIklWk~~~-------------------------~l~tf~gHtD~VRgL~vl~~~~flScs 197 (745)
T KOG0301|consen 145 AVASLP-EN-TYVTGSADKTIKLWKGGT-------------------------LLKTFSGHTDCVRGLAVLDDSHFLSCS 197 (745)
T ss_pred eeeecC-CC-cEEeccCcceeeeccCCc-------------------------hhhhhccchhheeeeEEecCCCeEeec
Confidence 999998 44 899999999999998755 577899999999999998 66999999
Q ss_pred ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee-eEE
Q 019117 258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC-FSL 336 (346)
Q Consensus 258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~ 336 (346)
.||.|++|++. ++ .+.++.+|..-|.+++..+++ ..++++++|++++||+.. +..+.+.+++ .++
T Consensus 198 NDg~Ir~w~~~-ge---------~l~~~~ghtn~vYsis~~~~~--~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiW 263 (745)
T KOG0301|consen 198 NDGSIRLWDLD-GE---------VLLEMHGHTNFVYSISMALSD--GLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIW 263 (745)
T ss_pred CCceEEEEecc-Cc---------eeeeeeccceEEEEEEecCCC--CeEEEecCCceEEEeecC--ceEEEEecCccceE
Confidence 99999999994 44 788999999999999966666 589999999999999987 6677777776 577
Q ss_pred EEEecCCCC
Q 019117 337 HVKYNPQSV 345 (346)
Q Consensus 337 ~~~~spdg~ 345 (346)
++.+-++|.
T Consensus 264 sa~~L~NgD 272 (745)
T KOG0301|consen 264 SAKVLLNGD 272 (745)
T ss_pred EEEEeeCCC
Confidence 777666553
No 85
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=3.5e-29 Score=210.33 Aligned_cols=288 Identities=18% Similarity=0.177 Sum_probs=227.9
Q ss_pred cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (346)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (346)
+.-+.+.+++++.+.|+++.=+| --+.+|.|..+| |.+++++.++.+..++. ..+.|+.++|. .||.+
T Consensus 190 rt~K~v~~f~~~~s~IT~ieqsP----aLDVVaiG~~~G~ViifNlK~dkil~sFk~-----d~g~VtslSFr--tDG~p 258 (910)
T KOG1539|consen 190 RTGKVVYTFQEFFSRITAIEQSP----ALDVVAIGLENGTVIIFNLKFDKILMSFKQ-----DWGRVTSLSFR--TDGNP 258 (910)
T ss_pred ccCcEEEEecccccceeEeccCC----cceEEEEeccCceEEEEEcccCcEEEEEEc-----cccceeEEEec--cCCCe
Confidence 45678889999999999999998 568999999999 99999999999888872 24788888776 89998
Q ss_pred EEEEeecCCeEEEEEccCcceeeeec-cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee-EEEecccCCCC---
Q 019117 100 FLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC-ILIFAGAGGHR--- 174 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~--- 174 (346)
.+++|+..|.+.+||++..+.+..+. .|.+.|....|.| +...+++++.|..+++|=.+++.- -+.++...+|.
T Consensus 259 ~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp 337 (910)
T KOG1539|consen 259 LLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPP 337 (910)
T ss_pred eEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCc
Confidence 99999999999999999888776665 7889999999999 889999999999998885442211 00011111222
Q ss_pred --------------------------------------------------------------------------------
Q 019117 175 -------------------------------------------------------------------------------- 174 (346)
Q Consensus 175 -------------------------------------------------------------------------------- 174 (346)
T Consensus 338 ~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~ 417 (910)
T KOG1539|consen 338 SCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITA 417 (910)
T ss_pred hheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEE
Confidence
Q ss_pred -------------------------------cceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCC
Q 019117 175 -------------------------------NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK 223 (346)
Q Consensus 175 -------------------------------~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 223 (346)
..+++++.++ .|++.+.|...|.|-+|++.++
T Consensus 418 h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSG---------------- 480 (910)
T KOG1539|consen 418 HKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSG---------------- 480 (910)
T ss_pred ecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccC----------------
Confidence 3455666665 6666666666666666666652
Q ss_pred CCCccceeceEEE---eecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCC-----------------------
Q 019117 224 FPTKYVQFPVFIA---SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPG----------------------- 275 (346)
Q Consensus 224 ~~~~~~~~~~~~~---~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~----------------------- 275 (346)
....++ ..|...|+.++.+ ++.+++++.+|-+++||.........
T Consensus 481 -------i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ 553 (910)
T KOG1539|consen 481 -------IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL 553 (910)
T ss_pred -------eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc
Confidence 222233 5799999999998 77899999999999999987652100
Q ss_pred ---------CccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117 276 ---------EGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 276 ---------~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~ 346 (346)
......++.+.+|...|++++||||| ++|++++.|++|++||+.++..+-.+.+......+.|||+|.|
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dg--rWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~ 631 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDG--RWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDF 631 (910)
T ss_pred CceeEEEEEchhhhhhHHhhccccceeeeEeCCCC--cEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCE
Confidence 01223567888999999999999999 8999999999999999999999999999999999999999975
No 86
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=1.5e-30 Score=204.33 Aligned_cols=231 Identities=19% Similarity=0.319 Sum_probs=191.6
Q ss_pred CCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc----------eeeeeccCCCceEEEEEeCCCCceEEEeeCC
Q 019117 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK----------LHKSFVGHGDSINEIRTQPLKPSLVVSASKD 150 (346)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 150 (346)
.|.+.|..+... |....++++.+..+.+.|||..+.. +-..+.+|.+.-.++.|++.....|++++.|
T Consensus 122 ~h~gEVnRaRym--PQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 122 NHDGEVNRARYM--PQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred cCCccchhhhhC--CCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 366677666666 7666689999999999999985432 2237788998889999999888899999999
Q ss_pred CCEEEEecCCCee-------EEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCC
Q 019117 151 ESVRLWNVQTGIC-------ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK 223 (346)
Q Consensus 151 ~~i~iwd~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 223 (346)
++|++||+..... ...+. +|...|..++|++....++.+++.|+.+.|||+|...
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~---~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~--------------- 261 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFS---GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT--------------- 261 (422)
T ss_pred CcEEEEeccccccCCccccceEEee---cCCcceehhhccccchhhheeecCCCeEEEEEcCCCC---------------
Confidence 9999999975432 33444 8999999999999888999999999999999999621
Q ss_pred CCCccceeceEEEeecccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeec
Q 019117 224 FPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD 300 (346)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 300 (346)
..+......|...|.|++|+ +..||+|+.|++|.+||++..+. ++..+.+|...|..+.|||+
T Consensus 262 ------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--------~lh~~e~H~dev~~V~WSPh 327 (422)
T KOG0264|consen 262 ------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--------PLHTFEGHEDEVFQVEWSPH 327 (422)
T ss_pred ------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--------CceeccCCCcceEEEEeCCC
Confidence 34556778899999999998 67999999999999999998763 78999999999999999999
Q ss_pred CCcceEEEEcCCCcEEEEEcCCCC------------cceeeeeeee---EEEEEecCCCCC
Q 019117 301 FHYNAAAIGNREGKIFVWELQSSP------------PVLIARLICF---SLHVKYNPQSVY 346 (346)
Q Consensus 301 ~~~~~l~~~~~dg~i~iwd~~~~~------------~~~~~~~~~~---~~~~~~spdg~~ 346 (346)
.+ ..||+++.|+.+.+||+..-. +...+.+.|| |..+.|+|+.++
T Consensus 328 ~e-tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW 387 (422)
T KOG0264|consen 328 NE-TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW 387 (422)
T ss_pred CC-ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCe
Confidence 87 799999999999999996521 3345666666 677899998653
No 87
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.3e-30 Score=187.71 Aligned_cols=257 Identities=20% Similarity=0.277 Sum_probs=198.8
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 108 (346)
..|.+.|-++...- .|++|||++.|+ |+||....+.....+..+. .|.++|+.++|+--.-|. +||+++.||
T Consensus 8 t~H~D~IHda~lDy----ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~--Gh~GPVwqv~wahPk~G~-iLAScsYDg 80 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDY----YGKRLATCSSDGTVKIFEVRNNGQSKLLAELT--GHSGPVWKVAWAHPKFGT-ILASCSYDG 80 (299)
T ss_pred hhhhhhhhHhhhhh----hcceeeeecCCccEEEEEEcCCCCceeeeEec--CCCCCeeEEeecccccCc-EeeEeecCc
Confidence 67888888877766 789999999999 9999998776644444432 488999999998444677 999999999
Q ss_pred eEEEEEccCcc--eeeeeccCCCceEEEEEeCCC-CceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCC
Q 019117 109 IIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLK-PSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS 185 (346)
Q Consensus 109 ~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 185 (346)
.|.||.-.+++ .......|...|++++|.|.+ +-.|++++.||.|.|.+.+....-..-+....|.-.|++++|.|.
T Consensus 81 kVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa 160 (299)
T KOG1332|consen 81 KVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPA 160 (299)
T ss_pred eEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCc
Confidence 99999988775 344567799999999999943 346888999999999998765211111222279999999999982
Q ss_pred C--C-----------cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecC--
Q 019117 186 D--I-----------YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG-- 250 (346)
Q Consensus 186 ~--~-----------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-- 250 (346)
. + +.|++|+.|..|+||+..+.. -.....+..|.+.|+.++|.+
T Consensus 161 ~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~---------------------w~~e~~l~~H~dwVRDVAwaP~~ 219 (299)
T KOG1332|consen 161 SAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS---------------------WKLERTLEGHKDWVRDVAWAPSV 219 (299)
T ss_pred CCCccccccCcccccceeeccCCccceeeeecCCcc---------------------hhhhhhhhhcchhhhhhhhcccc
Confidence 1 2 569999999999999998831 112234889999999999982
Q ss_pred ----CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117 251 ----DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (346)
Q Consensus 251 ----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~ 322 (346)
.++++++.||++.||..+...... ...++.. ....++.+.||+.| ++|++++.|+.|.+|.-..
T Consensus 220 gl~~s~iAS~SqDg~viIwt~~~e~e~w---k~tll~~---f~~~~w~vSWS~sG--n~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 220 GLPKSTIASCSQDGTVIIWTKDEEYEPW---KKTLLEE---FPDVVWRVSWSLSG--NILAVSGGDNKVTLWKENV 287 (299)
T ss_pred CCCceeeEEecCCCcEEEEEecCccCcc---ccccccc---CCcceEEEEEeccc--cEEEEecCCcEEEEEEeCC
Confidence 389999999999999887331111 1123333 34579999999999 7999999999999997543
No 88
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5.8e-28 Score=173.73 Aligned_cols=278 Identities=17% Similarity=0.257 Sum_probs=210.9
Q ss_pred cccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEec------cCc----eeeeEeeeecCCCccceE
Q 019117 19 KKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCL------EGG----VIAALQSYVDEDKEESFY 87 (346)
Q Consensus 19 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~------~~~----~~~~~~~~~~~~~~~~v~ 87 (346)
.++.|..+..|. ....|.+++|+| .|.+.|+|+... .+|--.. .+. ....+.......|.+.|+
T Consensus 19 ~k~~f~~i~~l~-dsqairav~fhp----~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiy 93 (350)
T KOG0641|consen 19 EKKHFEAINILE-DSQAIRAVAFHP----AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIY 93 (350)
T ss_pred cccceEEEEEec-chhheeeEEecC----CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEE
Confidence 345666666653 456799999999 789999999887 5554321 111 111222223345889999
Q ss_pred EEEEEEcCCCCcEEEEeecCCeEEEEEccCcce-----eeeeccCCCceEEEEEeCC---CCceEEEee-CCCCEEEEec
Q 019117 88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL-----HKSFVGHGDSINEIRTQPL---KPSLVVSAS-KDESVRLWNV 158 (346)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~---~~~~l~s~~-~d~~i~iwd~ 158 (346)
|.+|+ |.|. +|++|++|.+|++..++...+ -..+.-|.+.|..++|..+ ++.+|++++ .|..|++-|.
T Consensus 94 c~~ws--~~ge-liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc 170 (350)
T KOG0641|consen 94 CTAWS--PCGE-LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDC 170 (350)
T ss_pred EEEec--CccC-eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeec
Confidence 99998 9999 999999999999987765432 2356679999999999752 345677665 4677888899
Q ss_pred CCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe-
Q 019117 159 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS- 237 (346)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 237 (346)
..|+....+. +|.+.|.++- +- ++.++++|+.|.+|++||++-.. .+..+.
T Consensus 171 ~~g~~~~a~s---ghtghilaly-sw-n~~m~~sgsqdktirfwdlrv~~-----------------------~v~~l~~ 222 (350)
T KOG0641|consen 171 GRGQGFHALS---GHTGHILALY-SW-NGAMFASGSQDKTIRFWDLRVNS-----------------------CVNTLDN 222 (350)
T ss_pred CCCCcceeec---CCcccEEEEE-Ee-cCcEEEccCCCceEEEEeeeccc-----------------------eeeeccC
Confidence 9999999988 8999998874 33 78899999999999999999722 222221
Q ss_pred ------ecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEE
Q 019117 238 ------VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG 309 (346)
Q Consensus 238 ------~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~ 309 (346)
.....|.+++.+ |++|++|-.|....+||++.++ .++.+..|...|.++.|||.- .+|++|
T Consensus 223 ~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r---------~iq~f~phsadir~vrfsp~a--~yllt~ 291 (350)
T KOG0641|consen 223 DFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR---------MIQRFHPHSADIRCVRFSPGA--HYLLTC 291 (350)
T ss_pred cccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc---------eeeeeCCCccceeEEEeCCCc--eEEEEe
Confidence 123457777776 8999999999999999999987 789999999999999999998 699999
Q ss_pred cCCCcEEEEEcCCCC-----cceeeeeeeeEEEEEecCC
Q 019117 310 NREGKIFVWELQSSP-----PVLIARLICFSLHVKYNPQ 343 (346)
Q Consensus 310 ~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~spd 343 (346)
+.|..|++-|++..- .....+++..+..+.|.|.
T Consensus 292 syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~ 330 (350)
T KOG0641|consen 292 SYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQ 330 (350)
T ss_pred cccceEEEeecccchhhcCceEEEEeccCceEEEEecCc
Confidence 999999999997632 1223344555677888875
No 89
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.4e-29 Score=209.20 Aligned_cols=249 Identities=17% Similarity=0.259 Sum_probs=216.3
Q ss_pred cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (346)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (346)
...++.+++.. +-+.+..|-| .+.++++|...| +.+||+.....+..++. |.+.++.++.. ||++
T Consensus 402 ~t~kciRTi~~--~y~l~~~Fvp----gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~A-----HdgaIWsi~~~--pD~~- 467 (888)
T KOG0306|consen 402 DTLKCIRTITC--GYILASKFVP----GDRYIVLGTKNGELQVFDLASASLVETIRA-----HDGAIWSISLS--PDNK- 467 (888)
T ss_pred cCcceeEEecc--ccEEEEEecC----CCceEEEeccCCceEEEEeehhhhhhhhhc-----cccceeeeeec--CCCC-
Confidence 34666666643 3788999999 568899998888 99999999988887774 88999999888 9998
Q ss_pred EEEEeecCCeEEEEEccC-----cce--e------eeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEE
Q 019117 100 FLVAGGINGIIRVIDVSN-----EKL--H------KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI 166 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~-----~~~--~------~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 166 (346)
.+++|+.|.+|++||..- +.. + +++. -.+.|.|+.++| ++.+|+.+--|.+|+||-+.+.+....
T Consensus 468 g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFfls 545 (888)
T KOG0306|consen 468 GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLS 545 (888)
T ss_pred ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeee
Confidence 999999999999999732 111 1 1222 357899999999 999999999999999999999888888
Q ss_pred ecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEE
Q 019117 167 FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN 246 (346)
Q Consensus 167 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 246 (346)
+- ||.-+|.|+..+| ++.+++||+.|.+|++|-+.- +.+..++-.|.+.|.++
T Consensus 546 LY---GHkLPV~smDIS~-DSklivTgSADKnVKiWGLdF-----------------------GDCHKS~fAHdDSvm~V 598 (888)
T KOG0306|consen 546 LY---GHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDF-----------------------GDCHKSFFAHDDSVMSV 598 (888)
T ss_pred ec---ccccceeEEeccC-CcCeEEeccCCCceEEecccc-----------------------chhhhhhhcccCceeEE
Confidence 87 8999999999999 999999999999999999887 55777889999999999
Q ss_pred Eec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117 247 RWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (346)
Q Consensus 247 ~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (346)
.|. ...+.++|.|+.|+-||-...+ .++.+.+|...|++++.+|+| .+++++|.|.+|++|.-...
T Consensus 599 ~F~P~~~~FFt~gKD~kvKqWDg~kFe---------~iq~L~~H~~ev~cLav~~~G--~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 599 QFLPKTHLFFTCGKDGKVKQWDGEKFE---------EIQKLDGHHSEVWCLAVSPNG--SFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred EEcccceeEEEecCcceEEeechhhhh---------hheeeccchheeeeeEEcCCC--CeEEeccCCceeEeeeccCc
Confidence 998 5689999999999999998766 789999999999999999999 79999999999999997653
No 90
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3e-28 Score=175.20 Aligned_cols=258 Identities=14% Similarity=0.195 Sum_probs=203.9
Q ss_pred eeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCC--CCcEEE
Q 019117 26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD--GIPFLV 102 (346)
Q Consensus 26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~l~ 102 (346)
.+.-+.|++.|+|++|+| +|+++|+|+.|. |++.-+....+...=.......|.+.|..++|.-.|. |. +|+
T Consensus 82 ~kr~khhkgsiyc~~ws~----~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~ 156 (350)
T KOG0641|consen 82 CKRNKHHKGSIYCTAWSP----CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILA 156 (350)
T ss_pred eeeccccCccEEEEEecC----ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEE
Confidence 334477999999999999 899999999998 7776554333222212222234889999999986554 34 666
Q ss_pred Eee-cCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccC----CCCcce
Q 019117 103 AGG-INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG----GHRNEV 177 (346)
Q Consensus 103 ~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~v 177 (346)
+++ .|..|.+-|..+++..+.+.+|++-|.++--- ++-.+++|+.|.+|++||++-..++..+.... -..+.|
T Consensus 157 s~gagdc~iy~tdc~~g~~~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessav 234 (350)
T KOG0641|consen 157 SAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAV 234 (350)
T ss_pred ecCCCcceEEEeecCCCCcceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCccccee
Confidence 654 46788888989999999999999998877432 67899999999999999999888888775321 123689
Q ss_pred EEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEE
Q 019117 178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS 255 (346)
Q Consensus 178 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~ 255 (346)
.+++..| .+++|++|..|....+||++. ..++..+..|...|.|+.|+ ..++++
T Consensus 235 aav~vdp-sgrll~sg~~dssc~lydirg-----------------------~r~iq~f~phsadir~vrfsp~a~yllt 290 (350)
T KOG0641|consen 235 AAVAVDP-SGRLLASGHADSSCMLYDIRG-----------------------GRMIQRFHPHSADIRCVRFSPGAHYLLT 290 (350)
T ss_pred EEEEECC-CcceeeeccCCCceEEEEeeC-----------------------CceeeeeCCCccceeEEEeCCCceEEEE
Confidence 9999999 999999999999999999998 56788899999999999999 569999
Q ss_pred EeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117 256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (346)
Q Consensus 256 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~ 321 (346)
++.|..|++-|+...-. +.-++.....|...+..+.|+|.. .-+++.+.|.++.+|-+.
T Consensus 291 ~syd~~ikltdlqgdla-----~el~~~vv~ehkdk~i~~rwh~~d--~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 291 CSYDMKIKLTDLQGDLA-----HELPIMVVAEHKDKAIQCRWHPQD--FSFISSSADKTATLWALN 349 (350)
T ss_pred ecccceEEEeecccchh-----hcCceEEEEeccCceEEEEecCcc--ceeeeccCcceEEEeccC
Confidence 99999999999976421 111233344577788889999987 678899999999999764
No 91
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=8.9e-29 Score=185.39 Aligned_cols=263 Identities=14% Similarity=0.229 Sum_probs=195.9
Q ss_pred CCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeE
Q 019117 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII 110 (346)
Q Consensus 32 h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 110 (346)
-.+.|..|.|+|. .+.+||+. -|+ +++|+.........+. ++.++.+++|. ++. .+++|+.||.|
T Consensus 12 P~d~IS~v~f~~~---~~~LLvss-WDgslrlYdv~~~~l~~~~~------~~~plL~c~F~--d~~--~~~~G~~dg~v 77 (323)
T KOG1036|consen 12 PEDGISSVKFSPS---SSDLLVSS-WDGSLRLYDVPANSLKLKFK------HGAPLLDCAFA--DES--TIVTGGLDGQV 77 (323)
T ss_pred ChhceeeEEEcCc---CCcEEEEe-ccCcEEEEeccchhhhhhee------cCCceeeeecc--CCc--eEEEeccCceE
Confidence 3678999999972 23455555 555 9999988876555554 78888888886 544 69999999999
Q ss_pred EEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEE
Q 019117 111 RVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI 190 (346)
Q Consensus 111 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 190 (346)
+.+|+.+++... +-.|..+|.+|..++ ....+++|+.|++|++||.+.......+. ....|.++... ++.|
T Consensus 78 r~~Dln~~~~~~-igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d----~~kkVy~~~v~---g~~L 148 (323)
T KOG1036|consen 78 RRYDLNTGNEDQ-IGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFD----QGKKVYCMDVS---GNRL 148 (323)
T ss_pred EEEEecCCccee-eccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccccccc----cCceEEEEecc---CCEE
Confidence 999999887544 455999999999999 88999999999999999999866666665 56689998874 5678
Q ss_pred EEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCC
Q 019117 191 ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPK 268 (346)
Q Consensus 191 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~ 268 (346)
+.|+.|..|.+||+++...... .....+ .-.++|++.- +.-+++++-||.|.+=.++
T Consensus 149 vVg~~~r~v~iyDLRn~~~~~q------------------~reS~l---kyqtR~v~~~pn~eGy~~sSieGRVavE~~d 207 (323)
T KOG1036|consen 149 VVGTSDRKVLIYDLRNLDEPFQ------------------RRESSL---KYQTRCVALVPNGEGYVVSSIEGRVAVEYFD 207 (323)
T ss_pred EEeecCceEEEEEcccccchhh------------------hccccc---eeEEEEEEEecCCCceEEEeecceEEEEccC
Confidence 8999999999999999543110 001112 2234455544 5778899999999987777
Q ss_pred CCCCCCCCccccccccccCC---------CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce-eeeeeeeEEEE
Q 019117 269 MKEQSPGEGTADILQKYPVP---------ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL-IARLICFSLHV 338 (346)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~ 338 (346)
..+... .....++.| --+|.+|+|+|-. ..|+||+.||.|.+||+.+.+.+. ..+.+..+..+
T Consensus 208 ~s~~~~-----skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~--~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~sl 280 (323)
T KOG1036|consen 208 DSEEAQ-----SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH--GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSL 280 (323)
T ss_pred CchHHh-----hhceeEEeeecccCCceEEEEeceeEecccc--ceEEecCCCceEEEccCcchhhhhhccCCCCceEEE
Confidence 652110 112222222 2479999999986 689999999999999999977554 34455668899
Q ss_pred EecCCCC
Q 019117 339 KYNPQSV 345 (346)
Q Consensus 339 ~~spdg~ 345 (346)
+|+-||.
T Consensus 281 sfs~dG~ 287 (323)
T KOG1036|consen 281 SFSMDGS 287 (323)
T ss_pred EeccCCC
Confidence 9999885
No 92
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.7e-29 Score=189.61 Aligned_cols=259 Identities=17% Similarity=0.244 Sum_probs=200.6
Q ss_pred eeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEecc------------Cc---eeeeEeeeecCCCccceEEE
Q 019117 26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE------------GG---VIAALQSYVDEDKEESFYTV 89 (346)
Q Consensus 26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~------------~~---~~~~~~~~~~~~~~~~v~~~ 89 (346)
...+..|+.++.+-+|+| ||.++|+|+.|. |+|+|... +. ....++.+ ..|.+.|.++
T Consensus 105 t~ylt~HK~~cR~aafs~----DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl--YDH~devn~l 178 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSP----DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL--YDHVDEVNDL 178 (430)
T ss_pred eEEEeecccceeeeeeCC----CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh--hhccCcccce
Confidence 445688999999999999 899999999999 99999861 10 00112222 2477888888
Q ss_pred EEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeec--cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEe
Q 019117 90 SWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF 167 (346)
Q Consensus 90 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 167 (346)
.|. |... .|++|+.|++|+++|+......+.++ ....+|.++.|+| .+.+|+.|.+--++++||+++-++...-
T Consensus 179 ~FH--Pre~-ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~Qcfvsa 254 (430)
T KOG0640|consen 179 DFH--PRET-ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSA 254 (430)
T ss_pred eec--chhh-eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeec
Confidence 776 8787 99999999999999997654333222 2567899999999 9999999999999999999999988777
Q ss_pred cccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe-ecc-cceEE
Q 019117 168 AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS-VHS-NYVDC 245 (346)
Q Consensus 168 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~i~~ 245 (346)
....+|.+.|+++.+++ .+++.++++.||.|++||=.+ ..++.++. .|. ..|.+
T Consensus 255 nPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS-----------------------~rCv~t~~~AH~gsevcS 310 (430)
T KOG0640|consen 255 NPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVS-----------------------NRCVRTIGNAHGGSEVCS 310 (430)
T ss_pred CcccccccceeEEEecC-CccEEEEeccCCcEEeecccc-----------------------HHHHHHHHhhcCCceeee
Confidence 66668999999999998 999999999999999999877 22333332 343 45777
Q ss_pred EEec--CCEEEEEeecCeEEEEcCCCCCCCCCCc---------------------------------------ccccc-c
Q 019117 246 NRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEG---------------------------------------TADIL-Q 283 (346)
Q Consensus 246 ~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~---------------------------------------~~~~~-~ 283 (346)
..|. ++++++.+.|..+++|.+.+++...... ....+ .
T Consensus 311 a~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l 390 (430)
T KOG0640|consen 311 AVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL 390 (430)
T ss_pred EEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh
Confidence 8887 8999999999999999998876411100 00000 1
Q ss_pred cccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117 284 KYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 320 (346)
Q Consensus 284 ~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~ 320 (346)
--.+|.+.+..+.-||.+ ..+++|+.|-.+++|--
T Consensus 391 ~slgHn~a~R~i~HSP~~--p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 391 LSLGHNGAVRWIVHSPVE--PAFMTCSDDFRARFWYR 425 (430)
T ss_pred cccCCCCCceEEEeCCCC--Cceeeecccceeeeeee
Confidence 113478888999999988 68999999999999964
No 93
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=2.9e-29 Score=216.78 Aligned_cols=257 Identities=15% Similarity=0.161 Sum_probs=205.9
Q ss_pred eeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccC---------------ceeeeEeeeecCCCccceE
Q 019117 24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG---------------GVIAALQSYVDEDKEESFY 87 (346)
Q Consensus 24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~---------------~~~~~~~~~~~~~~~~~v~ 87 (346)
+++.+...|.+.|+|+.|+| ||++||+|++|+ |.||..... +..+.+..+ ..|...|.
T Consensus 60 k~l~~m~~h~~sv~CVR~S~----dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l--~~H~~DV~ 133 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSP----DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSIL--RGHDSDVL 133 (942)
T ss_pred hhheeeccccCceeEEEECC----CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEE--ecCCCccc
Confidence 45566688999999999999 899999999999 999997730 011222222 23888999
Q ss_pred EEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEe
Q 019117 88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF 167 (346)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 167 (346)
.++|+ |++. +|++++.|++|.||+..+.+.+..+.+|.+.|..+.|.| -+++|++-++|++|++|++.+-...+.+
T Consensus 134 Dv~Ws--p~~~-~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~I 209 (942)
T KOG0973|consen 134 DVNWS--PDDS-LLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSI 209 (942)
T ss_pred eeccC--CCcc-EEEEecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEee
Confidence 99998 8898 999999999999999999999999999999999999999 8999999999999999998776666666
Q ss_pred cccCC---CCcceEEEEecCCCCcEEEEEec----CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc
Q 019117 168 AGAGG---HRNEVLSVDFHPSDIYRIASCGM----DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240 (346)
Q Consensus 168 ~~~~~---~~~~v~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (346)
..... -...++.+.|+| +|.+|++... ..++.|.+-.+ ...-..+-+|.
T Consensus 210 t~pf~~~~~~T~f~RlSWSP-DG~~las~nA~n~~~~~~~IieR~t-----------------------Wk~~~~LvGH~ 265 (942)
T KOG0973|consen 210 TKPFEESPLTTFFLRLSWSP-DGHHLASPNAVNGGKSTIAIIERGT-----------------------WKVDKDLVGHS 265 (942)
T ss_pred ccchhhCCCcceeeecccCC-CcCeecchhhccCCcceeEEEecCC-----------------------ceeeeeeecCC
Confidence 53222 234678899999 9999988743 23566665544 23345788999
Q ss_pred cceEEEEec-------CC------------EEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecC
Q 019117 241 NYVDCNRWL-------GD------------FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF 301 (346)
Q Consensus 241 ~~i~~~~~~-------~~------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 301 (346)
.++.++.|+ .+ .+|+|+.|++|.||.....++ .+-........|..++|+|||
T Consensus 266 ~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP--------l~vi~~lf~~SI~DmsWspdG 337 (942)
T KOG0973|consen 266 APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP--------LFVIHNLFNKSIVDMSWSPDG 337 (942)
T ss_pred CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc--------hhhhhhhhcCceeeeeEcCCC
Confidence 999999997 12 688999999999999976653 222223345689999999999
Q ss_pred CcceEEEEcCCCcEEEEEcCCCC
Q 019117 302 HYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 302 ~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
..|.++|.||+|.+..++..+
T Consensus 338 --~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 338 --FSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred --CeEEEEecCCeEEEEEcchHH
Confidence 789999999999999998754
No 94
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2e-29 Score=197.46 Aligned_cols=255 Identities=16% Similarity=0.237 Sum_probs=200.8
Q ss_pred EEEEEEee---cCCCccEEEEEcCCc-EEEEEeccCceeeeE----------------eeeecCCCccceEEEEEEEcCC
Q 019117 37 YAVVFNFI---DSRYFNVFATVGGNR-VTVYQCLEGGVIAAL----------------QSYVDEDKEESFYTVSWACNVD 96 (346)
Q Consensus 37 ~~~~~~p~---~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~ 96 (346)
.|++|.-. +...|+++|.|..+. |.|||+.-...+... +.+....|...|..++|. ..
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n--~~ 254 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN--RN 254 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc--cc
Confidence 46666542 334578999999998 999998643322111 122233467777777776 44
Q ss_pred CCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe-eEEEecccCCCCc
Q 019117 97 GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-CILIFAGAGGHRN 175 (346)
Q Consensus 97 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~ 175 (346)
-++.||+|+.|.+|++||+.++++..++..|.+.|.++.|+|..+..|++|+.|++|.+.|.+... .-..++ ..+
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk----~~g 330 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK----FDG 330 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE----ecc
Confidence 555999999999999999999999999999999999999999999999999999999999999432 223333 678
Q ss_pred ceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCE
Q 019117 176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDF 252 (346)
Q Consensus 176 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~ 252 (346)
.|-.++|.|.....++++..||+++-+|+|+. +.++.++..|.+.|.+++++ +.+
T Consensus 331 ~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~----------------------~~~vwt~~AHd~~ISgl~~n~~~p~~ 388 (463)
T KOG0270|consen 331 EVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP----------------------GKPVWTLKAHDDEISGLSVNIQTPGL 388 (463)
T ss_pred ceEEEEecCCCceeEEEecCCceEEeeecCCC----------------------CCceeEEEeccCCcceEEecCCCCcc
Confidence 89999999988889999999999999999993 46899999999999999998 779
Q ss_pred EEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce
Q 019117 253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL 327 (346)
Q Consensus 253 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 327 (346)
+++++.|+.|++|++....... +......-+...|.++.|+-. -+++.|+..+.++|||+.+..++.
T Consensus 389 l~t~s~d~~Vklw~~~~~~~~~-------v~~~~~~~~rl~c~~~~~~~a-~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 389 LSTASTDKVVKLWKFDVDSPKS-------VKEHSFKLGRLHCFALDPDVA-FTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred eeeccccceEEEEeecCCCCcc-------cccccccccceeecccCCCcc-eEEEecCccceEEEeecccChhHH
Confidence 9999999999999998665321 111111123466777778765 488889999999999999887643
No 95
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.7e-28 Score=179.71 Aligned_cols=253 Identities=17% Similarity=0.221 Sum_probs=205.1
Q ss_pred cccCcceeeeccccccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCC
Q 019117 4 TAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDK 82 (346)
Q Consensus 4 ~a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~ 82 (346)
.+.+....++++... .+......++|.+.|-.++|+|.. ..+|++++.|. |++||...+++...+.. .
T Consensus 38 gs~dktv~v~n~e~~---r~~~~~~~~gh~~svdql~w~~~~---~d~~atas~dk~ir~wd~r~~k~~~~i~~-----~ 106 (313)
T KOG1407|consen 38 GSFDKTVSVWNLERD---RFRKELVYRGHTDSVDQLCWDPKH---PDLFATASGDKTIRIWDIRSGKCTARIET-----K 106 (313)
T ss_pred cccCCceEEEEecch---hhhhhhcccCCCcchhhheeCCCC---CcceEEecCCceEEEEEeccCcEEEEeec-----c
Confidence 344455556555542 344444568999999999999954 47888888888 99999999998877764 3
Q ss_pred ccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe
Q 019117 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI 162 (346)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 162 (346)
.+.+. +.|+ |+|+ +++.++.|..|...|.++.+.+...+ ....+..+.|+. .+++|+....-|+|.|.....-+
T Consensus 107 ~eni~-i~ws--p~g~-~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~-~nd~Fflt~GlG~v~ILsypsLk 180 (313)
T KOG1407|consen 107 GENIN-ITWS--PDGE-YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNN-SNDLFFLTNGLGCVEILSYPSLK 180 (313)
T ss_pred CcceE-EEEc--CCCC-EEEEecCcccEEEEEecccceeehhc-ccceeeeeeecC-CCCEEEEecCCceEEEEeccccc
Confidence 33443 4555 9999 99999999999999999887776655 456788899986 66666666667999999999999
Q ss_pred eEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccc
Q 019117 163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 242 (346)
Q Consensus 163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (346)
++..++ +|.....|+.|+| +++++++|+.|-.+.+||+.. -.+++.+..+.-+
T Consensus 181 pv~si~---AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~E-----------------------LiC~R~isRldwp 233 (313)
T KOG1407|consen 181 PVQSIK---AHPSNCICIEFDP-DGRYFATGSADALVSLWDVDE-----------------------LICERCISRLDWP 233 (313)
T ss_pred cccccc---cCCcceEEEEECC-CCceEeeccccceeeccChhH-----------------------hhhheeeccccCc
Confidence 999999 8999999999999 999999999999999999998 4567788889999
Q ss_pred eEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC
Q 019117 243 VDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE 312 (346)
Q Consensus 243 i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d 312 (346)
|+.+.|+ |++||++++|..|-|=+..++. .+..++ ++++...++|+|.. .+||-+..|
T Consensus 234 VRTlSFS~dg~~lASaSEDh~IDIA~vetGd---------~~~eI~-~~~~t~tVAWHPk~--~LLAyA~dd 293 (313)
T KOG1407|consen 234 VRTLSFSHDGRMLASASEDHFIDIAEVETGD---------RVWEIP-CEGPTFTVAWHPKR--PLLAYACDD 293 (313)
T ss_pred eEEEEeccCcceeeccCccceEEeEecccCC---------eEEEee-ccCCceeEEecCCC--ceeeEEecC
Confidence 9999998 9999999999999999999987 344443 35688899999988 677776654
No 96
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=4.1e-29 Score=215.88 Aligned_cols=275 Identities=20% Similarity=0.315 Sum_probs=211.8
Q ss_pred CCCceEEEEEEeecCCCccEEEEEc--CCc-EEEEEeccC--------ceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117 32 GKRPLYAVVFNFIDSRYFNVFATVG--GNR-VTVYQCLEG--------GVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (346)
Q Consensus 32 h~~~v~~~~~~p~~~~~~~~la~~~--~~~-v~i~~~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (346)
+...|++++.+| ++..+|||+ .|+ ++||+...- ..+..... .-..|.+.|.|+.|+ +||+ +
T Consensus 12 ~~~~IfSIdv~p----dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~-~m~~h~~sv~CVR~S--~dG~-~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHP----DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLC-TMDDHDGSVNCVRFS--PDGS-Y 83 (942)
T ss_pred CCeeEEEEEecC----CceeEecCCccccccceeeccccccchhhhhhcccchhhe-eeccccCceeEEEEC--CCCC-e
Confidence 356799999999 899999999 666 889986421 10111111 112488899999888 9999 9
Q ss_pred EEEeecCCeEEEEEccC------------------cceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe
Q 019117 101 LVAGGINGIIRVIDVSN------------------EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI 162 (346)
Q Consensus 101 l~~~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 162 (346)
||+|+.|+.|.||+... .+.+..+.+|...|.+++|+| ++.+|++++.|++|.+||.++.+
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~ 162 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFE 162 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccce
Confidence 99999999999999762 135678889999999999999 99999999999999999999999
Q ss_pred eEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccc
Q 019117 163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 242 (346)
Q Consensus 163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (346)
.+..++ +|.+.|..+.|.| -|++|++-+.|++|++|++.+........ .+ +.-..-...
T Consensus 163 ~~~vl~---~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It----------------~p-f~~~~~~T~ 221 (942)
T KOG0973|consen 163 LLKVLR---GHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSIT----------------KP-FEESPLTTF 221 (942)
T ss_pred eeeeee---cccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeec----------------cc-hhhCCCcce
Confidence 999999 8999999999999 99999999999999999977622111000 00 000111234
Q ss_pred eEEEEec--CCEEEEEee----cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeec--------C---C---
Q 019117 243 VDCNRWL--GDFILSKSV----DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD--------F---H--- 302 (346)
Q Consensus 243 i~~~~~~--~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--------~---~--- 302 (346)
...+.|+ |++|++... -.++.|.+-.+.+ .-..+-+|.+++.+++|+|- | +
T Consensus 222 f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk---------~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~ 292 (942)
T KOG0973|consen 222 FLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWK---------VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNC 292 (942)
T ss_pred eeecccCCCcCeecchhhccCCcceeEEEecCCce---------eeeeeecCCCceEEEEeChHHhccccccCCccCCCc
Confidence 5677887 889988743 4567787776655 56778899999999999982 1 1
Q ss_pred -cceEEEEcCCCcEEEEEcCCCCcceeee--eeeeEEEEEecCCCC
Q 019117 303 -YNAAAIGNREGKIFVWELQSSPPVLIAR--LICFSLHVKYNPQSV 345 (346)
Q Consensus 303 -~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~spdg~ 345 (346)
+..+|+|+.|++|.||.....+|+.... ....+.+++|||||.
T Consensus 293 ~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~ 338 (942)
T KOG0973|consen 293 YYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGF 338 (942)
T ss_pred ceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCC
Confidence 1278999999999999998877766443 234589999999994
No 97
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4e-30 Score=210.44 Aligned_cols=251 Identities=18% Similarity=0.299 Sum_probs=204.7
Q ss_pred cCCCceE---EEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEe-eeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117 31 EGKRPLY---AVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQ-SYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (346)
Q Consensus 31 ~h~~~v~---~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 105 (346)
.|...|. .+..++ ..+++|.+|+.|+ |++|+.........-. .-.-+.|.+-|..+..+ .+++ .|++++
T Consensus 19 qn~~~v~~~~~Lq~da---~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~--~~~~-tlIS~S 92 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDA---PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILC--GNGK-TLISAS 92 (735)
T ss_pred hccccccchhhccccC---CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhh--cCCC-ceEEec
Confidence 4555565 444443 3567899999999 9999976543311000 00112366777777777 6677 899999
Q ss_pred cCCeEEEEEccCc--ceeeeeccCCCceEEEEE-eCCCCceEEEeeCCCCEEEEecCCCe--eEEEecc------cCCCC
Q 019117 106 INGIIRVIDVSNE--KLHKSFVGHGDSINEIRT-QPLKPSLVVSASKDESVRLWNVQTGI--CILIFAG------AGGHR 174 (346)
Q Consensus 106 ~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~------~~~~~ 174 (346)
.|-+|++|+...+ -+..++..|.+.|.|++. .+ +..++++|+-|+.|.+||++++. .+..+.. ..++.
T Consensus 93 sDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k 171 (735)
T KOG0308|consen 93 SDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK 171 (735)
T ss_pred CCceEEEeecccCcchhHhhhhcccchheeeeeccc-CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence 9999999999877 577888999999999999 55 88899999999999999999772 3322221 11688
Q ss_pred cceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCE
Q 019117 175 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDF 252 (346)
Q Consensus 175 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~ 252 (346)
..|++++.++ .+..+++|+..+.+++||.++ ...+..+.+|.+.|.++..+ |..
T Consensus 172 ~siYSLA~N~-t~t~ivsGgtek~lr~wDprt-----------------------~~kimkLrGHTdNVr~ll~~dDGt~ 227 (735)
T KOG0308|consen 172 DSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRT-----------------------CKKIMKLRGHTDNVRVLLVNDDGTR 227 (735)
T ss_pred cceeeeecCC-cceEEEecCcccceEEecccc-----------------------ccceeeeeccccceEEEEEcCCCCe
Confidence 8999999998 889999999999999999999 55677888999999999998 999
Q ss_pred EEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117 253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (346)
Q Consensus 253 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (346)
+++++.||+|++||+...+ ++.++..|...|+++..+|+- ..+.+|+.||.|..=|+.+.
T Consensus 228 ~ls~sSDgtIrlWdLgqQr---------Cl~T~~vH~e~VWaL~~~~sf--~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 228 LLSASSDGTIRLWDLGQQR---------CLATYIVHKEGVWALQSSPSF--THVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EeecCCCceEEeeeccccc---------eeeeEEeccCceEEEeeCCCc--ceEEecCCCCcEEecccCCc
Confidence 9999999999999999877 888999999999999999887 79999999999999999983
No 98
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.9e-28 Score=184.57 Aligned_cols=286 Identities=16% Similarity=0.159 Sum_probs=205.7
Q ss_pred eeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCce--eeeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117 26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV--IAALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (346)
Q Consensus 26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 102 (346)
+..|++|.+.|++++|+. +|+.||+++.|+ |++|++.+-.. -+.++.-. .-+..+.+.|+ ||.+.+++
T Consensus 79 ~~~LKgH~~~vt~~~FsS----dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv---e~dhpT~V~Fa--pDc~s~vv 149 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSS----DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV---EYDHPTRVVFA--PDCKSVVV 149 (420)
T ss_pred hhhhhccCCceeeeEEcC----CCceeEEEeCCceEEEEecchhhhhhhhHhhccc---cCCCceEEEEC--CCcceEEE
Confidence 345799999999999998 899999999999 99999875221 11111111 11233445555 99886777
Q ss_pred EeecCCeEEEEEccCcce---e---------eeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEeccc
Q 019117 103 AGGINGIIRVIDVSNEKL---H---------KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA 170 (346)
Q Consensus 103 ~~~~dg~i~iwd~~~~~~---~---------~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 170 (346)
+.-...++++|.+...+. . .--+.|.-.+..+-... ++.+|++++.|..|.+|+++ |+.+..+.
T Consensus 150 ~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~id-- 225 (420)
T KOG2096|consen 150 SVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSID-- 225 (420)
T ss_pred EEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeeeec--
Confidence 777778999998754321 1 01123556677777776 88999999999999999998 99998887
Q ss_pred CCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-
Q 019117 171 GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL- 249 (346)
Q Consensus 171 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 249 (346)
.....-+..+.+| +|+++++++..--|++|.+--.+.... .....++.+.+|...|..++|+
T Consensus 226 -tnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~f---------------qev~rvf~LkGH~saV~~~aFsn 288 (420)
T KOG2096|consen 226 -TNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTF---------------QEVKRVFSLKGHQSAVLAAAFSN 288 (420)
T ss_pred -cccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcch---------------hhhhhhheeccchhheeeeeeCC
Confidence 4566677889999 999999999999999999865322111 1134577899999999999999
Q ss_pred -CCEEEEEeecCeEEEEcCCCCCCCCCCcccccccccc----CCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 250 -GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP----VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 250 -~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
...+++.+.||+++|||++-.-.... ....+.... ...+....+.++|++ ..||.. ....++++..++++
T Consensus 289 ~S~r~vtvSkDG~wriwdtdVrY~~~q--Dpk~Lk~g~~pl~aag~~p~RL~lsP~g--~~lA~s-~gs~l~~~~se~g~ 363 (420)
T KOG2096|consen 289 SSTRAVTVSKDGKWRIWDTDVRYEAGQ--DPKILKEGSAPLHAAGSEPVRLELSPSG--DSLAVS-FGSDLKVFASEDGK 363 (420)
T ss_pred CcceeEEEecCCcEEEeeccceEecCC--CchHhhcCCcchhhcCCCceEEEeCCCC--cEEEee-cCCceEEEEcccCc
Confidence 67999999999999999874321111 111222221 122334589999999 455544 34579999999987
Q ss_pred cceee--eeeeeEEEEEecCCCCC
Q 019117 325 PVLIA--RLICFSLHVKYNPQSVY 346 (346)
Q Consensus 325 ~~~~~--~~~~~~~~~~~spdg~~ 346 (346)
....+ .+.+.+.+++|+|||+|
T Consensus 364 ~~~~~e~~h~~~Is~is~~~~g~~ 387 (420)
T KOG2096|consen 364 DYPELEDIHSTTISSISYSSDGKY 387 (420)
T ss_pred cchhHHHhhcCceeeEEecCCCcE
Confidence 55433 35567899999999987
No 99
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=4.8e-30 Score=193.89 Aligned_cols=264 Identities=19% Similarity=0.252 Sum_probs=218.7
Q ss_pred cceeeeccccccc---cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCc
Q 019117 8 CEPLVGSLTPSKK---REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKE 83 (346)
Q Consensus 8 ~~~~~~~~~~~~~---~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~ 83 (346)
+...+|.+...+. ..|+....|--+.++|.|+.||. |..+||+|+.|+ |++|.+.+|.+++.+.. .|.
T Consensus 235 GFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR----DsEMlAsGsqDGkIKvWri~tG~ClRrFdr----AHt 306 (508)
T KOG0275|consen 235 GFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR----DSEMLASGSQDGKIKVWRIETGQCLRRFDR----AHT 306 (508)
T ss_pred ceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc----cHHHhhccCcCCcEEEEEEecchHHHHhhh----hhc
Confidence 3444555554222 23334444555789999999998 789999999999 99999999999888763 488
Q ss_pred cceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee
Q 019117 84 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC 163 (346)
Q Consensus 84 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 163 (346)
..|+++.|+ .|+. .+++++.|.++++.-+.+|++++.+++|+..|+...|.+ ++..+++++.||+|++|+..+.++
T Consensus 307 kGvt~l~FS--rD~S-qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC 382 (508)
T KOG0275|consen 307 KGVTCLSFS--RDNS-QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTEC 382 (508)
T ss_pred cCeeEEEEc--cCcc-hhhcccccceEEEeccccchhHHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcchhh
Confidence 889888877 8888 899999999999999999999999999999999999999 999999999999999999999999
Q ss_pred EEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee---cc
Q 019117 164 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV---HS 240 (346)
Q Consensus 164 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 240 (346)
+.+++.. +...+|+++-.-|.+...++.|...++|.+-++.. ..+.++.. ..
T Consensus 383 ~~Tfk~~-~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG------------------------QvVrsfsSGkREg 437 (508)
T KOG0275|consen 383 LSTFKPL-GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG------------------------QVVRSFSSGKREG 437 (508)
T ss_pred hhhccCC-CCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc------------------------eEEeeeccCCccC
Confidence 9999854 36678999999998889999999999999988876 12222221 11
Q ss_pred cceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117 241 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (346)
Q Consensus 241 ~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw 318 (346)
+...+...+ |.++.+.+.|+.++.|...+++ ....+..|+..+..++-+|.. +++|+-++||.+++|
T Consensus 438 GdFi~~~lSpkGewiYcigED~vlYCF~~~sG~---------LE~tl~VhEkdvIGl~HHPHq--NllAsYsEDgllKLW 506 (508)
T KOG0275|consen 438 GDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK---------LERTLPVHEKDVIGLTHHPHQ--NLLASYSEDGLLKLW 506 (508)
T ss_pred CceEEEEecCCCcEEEEEccCcEEEEEEeecCc---------eeeeeecccccccccccCccc--chhhhhcccchhhhc
Confidence 222333333 8999999999999999999987 677888899999999999988 799999999999999
Q ss_pred E
Q 019117 319 E 319 (346)
Q Consensus 319 d 319 (346)
.
T Consensus 507 k 507 (508)
T KOG0275|consen 507 K 507 (508)
T ss_pred C
Confidence 5
No 100
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.1e-29 Score=209.04 Aligned_cols=250 Identities=17% Similarity=0.289 Sum_probs=197.0
Q ss_pred ceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCC--CccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117 35 PLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDED--KEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (346)
Q Consensus 35 ~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 112 (346)
...+|..++ +...++.++..-+.||..........+....... ..-....+.|. ..+.+ +||+++..|.|.+
T Consensus 41 ~~nAIs~nr----~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~-~~~~N-lIAT~s~nG~i~v 114 (839)
T KOG0269|consen 41 KANAISVNR----DINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWG-QLYSN-LIATCSTNGVISV 114 (839)
T ss_pred ccceEeecC----CcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccc-cchhh-hheeecCCCcEEE
Confidence 455666666 5677888877778888876544333322211110 11223335666 33444 9999999999999
Q ss_pred EEccC---cceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcE
Q 019117 113 IDVSN---EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR 189 (346)
Q Consensus 113 wd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 189 (346)
||+.. .+.+..+..|...++++.|++...++|++|+.||+|++||++..+...++. +....|+.+.|+|..++.
T Consensus 115 Wdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~---~nSESiRDV~fsp~~~~~ 191 (839)
T KOG0269|consen 115 WDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR---SNSESIRDVKFSPGYGNK 191 (839)
T ss_pred EecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc---ccchhhhceeeccCCCce
Confidence 99987 567778899999999999999999999999999999999999999888888 688899999999978899
Q ss_pred EEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcC
Q 019117 190 IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEP 267 (346)
Q Consensus 190 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~ 267 (346)
++++...|.+++||+|.. ..+...+..|.+.|.|+.|+ +.+||+||.|+.|+|||.
T Consensus 192 F~s~~dsG~lqlWDlRqp----------------------~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~ 249 (839)
T KOG0269|consen 192 FASIHDSGYLQLWDLRQP----------------------DRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDM 249 (839)
T ss_pred EEEecCCceEEEeeccCc----------------------hhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEec
Confidence 999999999999999983 34667888999999999999 679999999999999999
Q ss_pred CCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc--CCCcEEEEEcCCCC
Q 019117 268 KMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN--REGKIFVWELQSSP 324 (346)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~--~dg~i~iwd~~~~~ 324 (346)
.+.+.. .+..+. ...+|.+++|-|+.+ ..|++++ .|-.|+|||+...-
T Consensus 250 t~~~~~-------~~~tIn-Tiapv~rVkWRP~~~-~hLAtcsmv~dtsV~VWDvrRPY 299 (839)
T KOG0269|consen 250 TDSRAK-------PKHTIN-TIAPVGRVKWRPARS-YHLATCSMVVDTSVHVWDVRRPY 299 (839)
T ss_pred cCCCcc-------ceeEEe-ecceeeeeeeccCcc-chhhhhhccccceEEEEeecccc
Confidence 876532 122221 235899999999987 5788877 47799999998743
No 101
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1.1e-27 Score=183.39 Aligned_cols=231 Identities=19% Similarity=0.277 Sum_probs=192.8
Q ss_pred CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC
Q 019117 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG 161 (346)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 161 (346)
|...|.+++.. |+.+ ++++|+.|..-.+|++.++.....+.+|.+.|+++.|+. ++.+|++|+-+|.|+||+..++
T Consensus 63 H~~svFavsl~--P~~~-l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~stg 138 (399)
T KOG0296|consen 63 HTDSVFAVSLH--PNNN-LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKVSTG 138 (399)
T ss_pred cCCceEEEEeC--CCCc-eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEcccC
Confidence 78888888877 7666 999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc
Q 019117 162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241 (346)
Q Consensus 162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (346)
.....+. ..-..+.-+.|+| ....|+.|+.||.+-+|.+.+ +.....+.+|..
T Consensus 139 ~~~~~~~---~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~-----------------------~~~~kv~~Gh~~ 191 (399)
T KOG0296|consen 139 GEQWKLD---QEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPS-----------------------QALCKVMSGHNS 191 (399)
T ss_pred ceEEEee---cccCceEEEEecc-cccEEEeecCCCcEEEEECCC-----------------------cceeeEecCCCC
Confidence 9888886 4667888999999 999999999999999999988 345667888999
Q ss_pred ceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCc------------------------------------------
Q 019117 242 YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEG------------------------------------------ 277 (346)
Q Consensus 242 ~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~------------------------------------------ 277 (346)
.+++=.|. |+.++++..||+|++||+.++++.....
T Consensus 192 ~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~ 271 (399)
T KOG0296|consen 192 PCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCN 271 (399)
T ss_pred CcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEec
Confidence 99998887 8899999999999999998875410000
Q ss_pred --------------------------------------------cccccccccCCCcCeeEEEEeecCCcceEEEEcCCC
Q 019117 278 --------------------------------------------TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG 313 (346)
Q Consensus 278 --------------------------------------------~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg 313 (346)
....++..-.|...|..+.|-+ . .+|++++.||
T Consensus 272 n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t--~~l~t~c~~g 348 (399)
T KOG0296|consen 272 NGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-T--DYLLTACANG 348 (399)
T ss_pred CCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-c--chheeeccCc
Confidence 0001122233667889999998 3 5899999999
Q ss_pred cEEEEEcCCCCcceeee-eeeeEEEEEecCCCCC
Q 019117 314 KIFVWELQSSPPVLIAR-LICFSLHVKYNPQSVY 346 (346)
Q Consensus 314 ~i~iwd~~~~~~~~~~~-~~~~~~~~~~spdg~~ 346 (346)
.|+.||.++|..+..+. +..++.+++.+||+++
T Consensus 349 ~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~ 382 (399)
T KOG0296|consen 349 KVRQWDARTGQLKFTYTGHQMGILDFALSPQKRL 382 (399)
T ss_pred eEEeeeccccceEEEEecCchheeEEEEcCCCcE
Confidence 99999999998665443 3445889999999874
No 102
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=7.7e-28 Score=188.23 Aligned_cols=263 Identities=17% Similarity=0.241 Sum_probs=210.6
Q ss_pred CceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117 34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 112 (346)
..|.++...| ....+++|+.|. +.++|...++.+..+.+ |...|..+.+. ++.. .+++++.|..|+|
T Consensus 220 pgi~ald~~~----s~~~ilTGG~d~~av~~d~~s~q~l~~~~G-----h~kki~~v~~~--~~~~-~v~~aSad~~i~v 287 (506)
T KOG0289|consen 220 PGITALDIIP----SSSKILTGGEDKTAVLFDKPSNQILATLKG-----HTKKITSVKFH--KDLD-TVITASADEIIRV 287 (506)
T ss_pred CCeeEEeecC----CCCcceecCCCCceEEEecchhhhhhhccC-----cceEEEEEEec--cchh-heeecCCcceEEe
Confidence 4577777777 357899999995 99999888888877765 66667666655 7777 8999999999999
Q ss_pred EEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEE
Q 019117 113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS 192 (346)
Q Consensus 113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 192 (346)
|.............|..+|+.+..+| .+.+|++++.|++..+.|++++..+...... ...-.+++.+||| ++.+|.+
T Consensus 288 ws~~~~s~~~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-~s~v~~ts~~fHp-DgLifgt 364 (506)
T KOG0289|consen 288 WSVPLSSEPTSSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDE-TSDVEYTSAAFHP-DGLIFGT 364 (506)
T ss_pred eccccccCccccccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeec-cccceeEEeeEcC-CceEEec
Confidence 99988777788888999999999999 8999999999999999999999988877621 1234689999999 9999999
Q ss_pred EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCC
Q 019117 193 CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMK 270 (346)
Q Consensus 193 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~ 270 (346)
|..|+.|+|||+.+ +..+..+.+|+.+|..++|+ |-+|++++.|+.|++||++..
T Consensus 365 gt~d~~vkiwdlks-----------------------~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 365 GTPDGVVKIWDLKS-----------------------QTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL 421 (506)
T ss_pred cCCCceEEEEEcCC-----------------------ccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh
Confidence 99999999999998 45677888999999999999 779999999999999999987
Q ss_pred CCCCCCccccccccccCCC-cCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee---eeeeeEEEEEecCCCC
Q 019117 271 EQSPGEGTADILQKYPVPE-CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA---RLICFSLHVKYNPQSV 345 (346)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~spdg~ 345 (346)
+ ...++...+ ..+.++.|.+.| .+|+.++.|=.|++++-.+.+-.... .+.+..+.+.|..+-+
T Consensus 422 ~---------n~kt~~l~~~~~v~s~~fD~SG--t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq 489 (506)
T KOG0289|consen 422 K---------NFKTIQLDEKKEVNSLSFDQSG--TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQ 489 (506)
T ss_pred c---------ccceeeccccccceeEEEcCCC--CeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccce
Confidence 6 333333322 368899999999 78999988867777764444332222 2233456666665433
No 103
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=8.1e-27 Score=185.94 Aligned_cols=268 Identities=14% Similarity=0.303 Sum_probs=206.5
Q ss_pred cccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (346)
Q Consensus 29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 108 (346)
.+..++.|...+|+|.+ .+++++++.+.+..|++..+...+....|..... .-|.+++|. ++|. +++|..+|
T Consensus 196 vk~sne~v~~a~FHPtd---~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ek-k~Vl~v~F~--engd--viTgDS~G 267 (626)
T KOG2106|consen 196 VKTSNEVVFLATFHPTD---PNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREK-KFVLCVTFL--ENGD--VITGDSGG 267 (626)
T ss_pred ceeccceEEEEEeccCC---CcEEEEeCCceEEEEEccCCceEEEeeccccccc-eEEEEEEEc--CCCC--EEeecCCc
Confidence 34456778899999965 4899999999999999999888887777765544 666666665 8886 89999999
Q ss_pred eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEeccc------------------
Q 019117 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA------------------ 170 (346)
Q Consensus 109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------------------ 170 (346)
.|.||+..+.+..+....|.+.|.++.... ++ .|++|+.|+.|..||- .-+.++....+
T Consensus 268 ~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr-~G-tllSGgKDRki~~Wd~-~y~k~r~~elPe~~G~iRtv~e~~~di~v 344 (626)
T KOG2106|consen 268 NILIWSKGTNRISKQVHAHDGGVFSLCMLR-DG-TLLSGGKDRKIILWDD-NYRKLRETELPEQFGPIRTVAEGKGDILV 344 (626)
T ss_pred eEEEEeCCCceEEeEeeecCCceEEEEEec-Cc-cEeecCccceEEeccc-cccccccccCchhcCCeeEEecCCCcEEE
Confidence 999999988888877779999999999987 54 5666999999999983 22222211111
Q ss_pred --------------------CCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccce
Q 019117 171 --------------------GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ 230 (346)
Q Consensus 171 --------------------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (346)
.+|......++.+| +.+++++++.|+.+++|+ ..
T Consensus 345 GTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~-~~------------------------ 398 (626)
T KOG2106|consen 345 GTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN-DH------------------------ 398 (626)
T ss_pred eeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc-CC------------------------
Confidence 16778888999999 889999999999999999 22
Q ss_pred eceEEEeecccceEEEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEE
Q 019117 231 FPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG 309 (346)
Q Consensus 231 ~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~ 309 (346)
++..+. .-.++..|+.|+ ...++.|...|...+.|..+.. .+.... ...+++.++|+|+| .+||.|
T Consensus 399 k~~wt~-~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~---------lv~~~~-d~~~ls~v~ysp~G--~~lAvg 465 (626)
T KOG2106|consen 399 KLEWTK-IIEDPAECADFHPSGVVAVGTATGRWFVLDTETQD---------LVTIHT-DNEQLSVVRYSPDG--AFLAVG 465 (626)
T ss_pred ceeEEE-EecCceeEeeccCcceEEEeeccceEEEEecccce---------eEEEEe-cCCceEEEEEcCCC--CEEEEe
Confidence 112221 234567788887 3399999999999999998854 333333 37799999999999 799999
Q ss_pred cCCCcEEEEEcCCCCcceee--ee-eeeEEEEEecCCCCC
Q 019117 310 NREGKIFVWELQSSPPVLIA--RL-ICFSLHVKYNPQSVY 346 (346)
Q Consensus 310 ~~dg~i~iwd~~~~~~~~~~--~~-~~~~~~~~~spdg~~ 346 (346)
+.|+.|+||.+..+...... +. ..+++++.||+|++|
T Consensus 466 s~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~ 505 (626)
T KOG2106|consen 466 SHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQF 505 (626)
T ss_pred cCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCce
Confidence 99999999999876533221 22 256899999999986
No 104
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.2e-29 Score=209.02 Aligned_cols=248 Identities=18% Similarity=0.305 Sum_probs=198.2
Q ss_pred ceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEE
Q 019117 35 PLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVI 113 (346)
Q Consensus 35 ~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw 113 (346)
.+.+|+|+.. +.+++|+++.+| |.+||+......+.+..| ..|...+.++.|. +-..++|++|+.||+|++|
T Consensus 89 S~~DVkW~~~---~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f--~EH~Rs~~~ldfh--~tep~iliSGSQDg~vK~~ 161 (839)
T KOG0269|consen 89 SAADVKWGQL---YSNLIATCSTNGVISVWDLNKSIRNKLLTVF--NEHERSANKLDFH--STEPNILISGSQDGTVKCW 161 (839)
T ss_pred ehhhcccccc---hhhhheeecCCCcEEEEecCccccchhhhHh--hhhccceeeeeec--cCCccEEEecCCCceEEEE
Confidence 3567888852 568999999999 999999873333333333 2388888888887 4444599999999999999
Q ss_pred EccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC-eeEEEecccCCCCcceEEEEecCCCCcEEEE
Q 019117 114 DVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-ICILIFAGAGGHRNEVLSVDFHPSDIYRIAS 192 (346)
Q Consensus 114 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 192 (346)
|++..+...++.+....|.+|+|+|..++.|+++.+.|.+.+||++.. ++...+. +|.++|.|+.|+| ++.+|+|
T Consensus 162 DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~---AH~GpV~c~nwhP-nr~~lAT 237 (839)
T KOG0269|consen 162 DLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLT---AHNGPVLCLNWHP-NREWLAT 237 (839)
T ss_pred eeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhh---cccCceEEEeecC-CCceeee
Confidence 999999999999999999999999988899999999999999999854 3445555 8999999999999 9999999
Q ss_pred EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEee--cCeEEEEcC
Q 019117 193 CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSV--DNEIVLWEP 267 (346)
Q Consensus 193 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~--d~~i~iwd~ 267 (346)
||.|+.|+|||+...+. .++.++ ....+|.++.|. ..+|++++. |-.|+|||+
T Consensus 238 GGRDK~vkiWd~t~~~~---------------------~~~~tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDv 295 (839)
T KOG0269|consen 238 GGRDKMVKIWDMTDSRA---------------------KPKHTI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDV 295 (839)
T ss_pred cCCCccEEEEeccCCCc---------------------cceeEE-eecceeeeeeeccCccchhhhhhccccceEEEEee
Confidence 99999999999987321 222222 234578899998 457888765 889999999
Q ss_pred CCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 268 KMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
+..-. +...+..|...++.++|-.... ..|.+++.||.|..-.+++..
T Consensus 296 rRPYI--------P~~t~~eH~~~vt~i~W~~~d~-~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 296 RRPYI--------PYATFLEHTDSVTGIAWDSGDR-INLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred ccccc--------cceeeeccCccccceeccCCCc-eeeEeecCccHHHHhhhhccc
Confidence 86542 6677888999999999987333 689999999998776666543
No 105
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=6.5e-28 Score=189.89 Aligned_cols=255 Identities=16% Similarity=0.238 Sum_probs=198.5
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 108 (346)
++|...|.+++.+| ++++||+|+.|. |.||+..+.+.++.+.. |.+.|.+++|- .|.+.|++++.|+
T Consensus 199 ~~h~keil~~avS~----Dgkylatgg~d~~v~Iw~~~t~ehv~~~~g-----hr~~V~~L~fr---~gt~~lys~s~Dr 266 (479)
T KOG0299|consen 199 KGHVKEILTLAVSS----DGKYLATGGRDRHVQIWDCDTLEHVKVFKG-----HRGAVSSLAFR---KGTSELYSASADR 266 (479)
T ss_pred ccccceeEEEEEcC----CCcEEEecCCCceEEEecCcccchhhcccc-----cccceeeeeee---cCccceeeeecCC
Confidence 48999999999999 899999999999 88999999998888664 88889999885 4444899999999
Q ss_pred eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCc
Q 019117 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY 188 (346)
Q Consensus 109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 188 (346)
.|++|+++....+.++.+|.+.|..|.... .+..+.+|+.|+++++|++..... ..+. ++.+.+-|++|- +..
T Consensus 267 svkvw~~~~~s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~eesq-lifr---g~~~sidcv~~I--n~~ 339 (479)
T KOG0299|consen 267 SVKVWSIDQLSYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEESQ-LIFR---GGEGSIDCVAFI--NDE 339 (479)
T ss_pred ceEEEehhHhHHHHHHhCCccceeeechhc-ccceEEeccccceeEEEeccccce-eeee---CCCCCeeeEEEe--ccc
Confidence 999999999999999999999999999987 677777788999999999954433 3444 688999999998 567
Q ss_pred EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEc
Q 019117 189 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWE 266 (346)
Q Consensus 189 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd 266 (346)
.+++|+.+|.|.+|++...+............+ ......++.+|++++.. .+++++|+.+|.|++|.
T Consensus 340 HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~-----------~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~ 408 (479)
T KOG0299|consen 340 HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIP-----------ELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWK 408 (479)
T ss_pred ceeeccCCceEEEeeecccCceeEeeccccccC-----------CccccccccceeeeEecccCceEEecCCCCceEEEE
Confidence 899999999999999988443222211100000 00011223588888887 78999999999999999
Q ss_pred CCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117 267 PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (346)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~ 321 (346)
+..+-. ...++..++ -.+-|++++|+++|+ .+++..+....+--|-..
T Consensus 409 i~~g~r-----~i~~l~~ls-~~GfVNsl~f~~sgk-~ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 409 IEDGLR-----AINLLYSLS-LVGFVNSLAFSNSGK-RIVAGIGKEHRLGRWWCL 456 (479)
T ss_pred ecCCcc-----ccceeeecc-cccEEEEEEEccCCC-EEEEecccccccceeeEe
Confidence 988732 223555555 457899999999995 366666666666556443
No 106
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=8.3e-28 Score=198.32 Aligned_cols=242 Identities=20% Similarity=0.390 Sum_probs=203.9
Q ss_pred cceeeeeecccCCCceEE-EEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117 21 REYRVTNKLQEGKRPLYA-VVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI 98 (346)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~-~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (346)
..+-....+.+|.+-|.+ ++|-+ .++.++++|+.|. |.+|......+...+.+ |...|.+++.. .++
T Consensus 45 ~~~l~~~~~~~~~g~i~~~i~y~e---~~~~~l~~g~~D~~i~v~~~~~~~P~~~Lkg-----H~snVC~ls~~--~~~- 113 (745)
T KOG0301|consen 45 KQYLETHAFEGPKGFIANSICYAE---SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKG-----HKSNVCSLSIG--EDG- 113 (745)
T ss_pred cccccceecccCcceeeccceecc---ccCcceEeecccceEEEEecCCCCchhhhhc-----cccceeeeecC--CcC-
Confidence 444445567888888877 88876 2556789999998 99999988888888876 67777666654 555
Q ss_pred cEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceE
Q 019117 99 PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 178 (346)
Q Consensus 99 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 178 (346)
.+++|+.|.++++|.. +++...+++|+..|++++.-| +. .++||+.|.+|++|.- ++.+++|. +|...|+
T Consensus 114 -~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~--~~~l~tf~---gHtD~VR 183 (745)
T KOG0301|consen 114 -TLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLP-EN-TYVTGSADKTIKLWKG--GTLLKTFS---GHTDCVR 183 (745)
T ss_pred -ceEecccccceEEecc--hhhhcccCCcchheeeeeecC-CC-cEEeccCcceeeeccC--Cchhhhhc---cchhhee
Confidence 4899999999999975 566677999999999999998 44 9999999999999975 78889998 8999999
Q ss_pred EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEE
Q 019117 179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK 256 (346)
Q Consensus 179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~ 256 (346)
++++-+ + ..+++++.||.|+.|++.. ..+..+.+|+..|.++... ++.++++
T Consensus 184 gL~vl~-~-~~flScsNDg~Ir~w~~~g------------------------e~l~~~~ghtn~vYsis~~~~~~~Ivs~ 237 (745)
T KOG0301|consen 184 GLAVLD-D-SHFLSCSNDGSIRLWDLDG------------------------EVLLEMHGHTNFVYSISMALSDGLIVST 237 (745)
T ss_pred eeEEec-C-CCeEeecCCceEEEEeccC------------------------ceeeeeeccceEEEEEEecCCCCeEEEe
Confidence 999996 4 4589999999999999954 5678899999999999954 7899999
Q ss_pred eecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117 257 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (346)
Q Consensus 257 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (346)
++|++++||+... +.+.+..+...|+++++-++|. +++|+.||.|+||.....
T Consensus 238 gEDrtlriW~~~e-----------~~q~I~lPttsiWsa~~L~NgD---Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 238 GEDRTLRIWKKDE-----------CVQVITLPTTSIWSAKVLLNGD---IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred cCCceEEEeecCc-----------eEEEEecCccceEEEEEeeCCC---EEEeccCceEEEEEeccc
Confidence 9999999999872 6777777888999999999984 888999999999988743
No 107
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=8.3e-28 Score=181.31 Aligned_cols=259 Identities=16% Similarity=0.246 Sum_probs=201.9
Q ss_pred ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccC----c---------------------------
Q 019117 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG----G--------------------------- 69 (346)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~----~--------------------------- 69 (346)
..+++.++.||.+.|++++|++ .+.+++++++|+ -.||...-. +
T Consensus 179 sg~CL~~Y~GH~GSVNsikfh~----s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~ 254 (481)
T KOG0300|consen 179 SGACLATYTGHTGSVNSIKFHN----SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSE 254 (481)
T ss_pred cccceeeecccccceeeEEecc----ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccccccc
Confidence 4678889999999999999999 789999999998 888862100 0
Q ss_pred -----ee-eeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCce
Q 019117 70 -----VI-AALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSL 143 (346)
Q Consensus 70 -----~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 143 (346)
.+ ..+.. ...|...|.+..|. ..|+ .+++++.|.+-.+||+++++.+..+.+|....+-++-+| ...+
T Consensus 255 ~sD~~tiRvPl~~--ltgH~~vV~a~dWL--~gg~-Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrL 328 (481)
T KOG0300|consen 255 KSDGHTIRVPLMR--LTGHRAVVSACDWL--AGGQ-QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRL 328 (481)
T ss_pred ccCCceeeeeeee--eeccccceEehhhh--cCcc-eeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceE
Confidence 00 00111 12355666666665 5576 999999999999999999999999999999999999999 8899
Q ss_pred EEEeeCCCCEEEEecCCC-eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCC
Q 019117 144 VVSASKDESVRLWNVQTG-ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPS 222 (346)
Q Consensus 144 l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 222 (346)
+++.+.|.+.++||++.. ..+..|+ +|...|+++.|.- +..+++|+.|.+|++||++++.
T Consensus 329 VvTsSrDtTFRLWDFReaI~sV~VFQ---GHtdtVTS~vF~~--dd~vVSgSDDrTvKvWdLrNMR-------------- 389 (481)
T KOG0300|consen 329 VVTSSRDTTFRLWDFREAIQSVAVFQ---GHTDTVTSVVFNT--DDRVVSGSDDRTVKVWDLRNMR-------------- 389 (481)
T ss_pred EEEeccCceeEeccchhhcceeeeec---ccccceeEEEEec--CCceeecCCCceEEEeeecccc--------------
Confidence 999999999999999832 3344555 9999999999984 5679999999999999999943
Q ss_pred CCCCccceeceEEEeecccceEEEEec-CC-EEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeec
Q 019117 223 KFPTKYVQFPVFIASVHSNYVDCNRWL-GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD 300 (346)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 300 (346)
.++.++.. ...+..++.+ |. .++.--.+..|++||++..+.... +...-.+|...|.|++|..+
T Consensus 390 --------splATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRl-----PrtsRqgHrRMV~c~AW~ee 455 (481)
T KOG0300|consen 390 --------SPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARL-----PRTSRQGHRRMVTCCAWLEE 455 (481)
T ss_pred --------Ccceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccccC-----Ccccccccceeeeeeecccc
Confidence 34444443 4557777777 55 666666778899999998763221 22244578889999999988
Q ss_pred CCcceEEEEcCCCcEEEEEcCCC
Q 019117 301 FHYNAAAIGNREGKIFVWELQSS 323 (346)
Q Consensus 301 ~~~~~l~~~~~dg~i~iwd~~~~ 323 (346)
..-.-|.+++.|..+.-|++...
T Consensus 456 hp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 456 HPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred CcccccccccccceeeeeEeccc
Confidence 75456889999999999998754
No 108
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=3.4e-28 Score=182.62 Aligned_cols=213 Identities=16% Similarity=0.318 Sum_probs=173.5
Q ss_pred CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccC------------c------ceeeeeccCCCceEEEEEeCCCCce
Q 019117 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN------------E------KLHKSFVGHGDSINEIRTQPLKPSL 143 (346)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~~~ 143 (346)
|...+.+-+|+ +||. ++++|+.|..|+|.|+.. + -.++++-.|.++|+++.|+| ....
T Consensus 111 HK~~cR~aafs--~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-re~I 186 (430)
T KOG0640|consen 111 HKSPCRAAAFS--PDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-RETI 186 (430)
T ss_pred cccceeeeeeC--CCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-hhhe
Confidence 66666655555 9999 999999999999999851 1 24677788999999999999 8999
Q ss_pred EEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCC
Q 019117 144 VVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK 223 (346)
Q Consensus 144 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 223 (346)
|++|+.|++|+++|+......+.++.. ....+|+++.|+| .|.+++.|..-.++++||+.+.+....
T Consensus 187 LiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~Qcfvs----------- 253 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVS----------- 253 (430)
T ss_pred EEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeee-----------
Confidence 999999999999999754333333221 2567999999999 999999999999999999998543221
Q ss_pred CCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccC-C-CcCeeEEEEee
Q 019117 224 FPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-P-ECDIWFIKFSC 299 (346)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~-~~~v~~~~~s~ 299 (346)
...-..|.+.|+++.++ +++.++++.||.|++||--+++ ++.++.. | ...|.+..|..
T Consensus 254 ---------anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r---------Cv~t~~~AH~gsevcSa~Ftk 315 (430)
T KOG0640|consen 254 ---------ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR---------CVRTIGNAHGGSEVCSAVFTK 315 (430)
T ss_pred ---------cCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHH---------HHHHHHhhcCCceeeeEEEcc
Confidence 11334689999999999 8899999999999999998877 5655543 3 35699999999
Q ss_pred cCCcceEEEEcCCCcEEEEEcCCCCcceeeee
Q 019117 300 DFHYNAAAIGNREGKIFVWELQSSPPVLIARL 331 (346)
Q Consensus 300 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 331 (346)
++ +++++.+.|..+++|.+.++..+..+.-
T Consensus 316 n~--kyiLsSG~DS~vkLWEi~t~R~l~~YtG 345 (430)
T KOG0640|consen 316 NG--KYILSSGKDSTVKLWEISTGRMLKEYTG 345 (430)
T ss_pred CC--eEEeecCCcceeeeeeecCCceEEEEec
Confidence 99 7999999999999999999987766543
No 109
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.3e-27 Score=188.56 Aligned_cols=254 Identities=17% Similarity=0.204 Sum_probs=202.1
Q ss_pred cEEEEEcCCc--EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccC
Q 019117 50 NVFATVGGNR--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH 127 (346)
Q Consensus 50 ~~la~~~~~~--v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 127 (346)
.+++++...+ +.+|.+.+..... +. ....+.+.+++-. |+|. +|+.|...|.|++|.+.+|+.+..+.+|
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~--q~---~v~Pg~v~al~s~--n~G~-~l~ag~i~g~lYlWelssG~LL~v~~aH 122 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVV--QY---IVLPGPVHALASS--NLGY-FLLAGTISGNLYLWELSSGILLNVLSAH 122 (476)
T ss_pred hheeeecccCccccccccCchhhhh--hh---cccccceeeeecC--CCce-EEEeecccCcEEEEEeccccHHHHHHhh
Confidence 5677776665 9999987655544 11 1245667666655 8898 8888889999999999999999999999
Q ss_pred CCceEEEEEeCCCCceEEEeeCCCCEEEEecC---------CCeeEEEecccCCCCcceEEEEecCCC--CcEEEEEecC
Q 019117 128 GDSINEIRTQPLKPSLVVSASKDESVRLWNVQ---------TGICILIFAGAGGHRNEVLSVDFHPSD--IYRIASCGMD 196 (346)
Q Consensus 128 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d 196 (346)
-..|+++.|+. ++.+|++|+.||.|.+|.+. +-+++..+. .|.-+|+.+...+ + ..+++|++.|
T Consensus 123 YQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~---~HtlsITDl~ig~-Gg~~~rl~TaS~D 197 (476)
T KOG0646|consen 123 YQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS---DHTLSITDLQIGS-GGTNARLYTASED 197 (476)
T ss_pred ccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeec---cCcceeEEEEecC-CCccceEEEecCC
Confidence 99999999998 99999999999999999874 345666776 7999999999886 4 4689999999
Q ss_pred CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCC-
Q 019117 197 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQS- 273 (346)
Q Consensus 197 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~- 273 (346)
.++++||+..+. .+.++ ..+..+.+++.+ +..+.+|+.+|.|.+.++......
T Consensus 198 ~t~k~wdlS~g~-----------------------LLlti-~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~ 253 (476)
T KOG0646|consen 198 RTIKLWDLSLGV-----------------------LLLTI-TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQS 253 (476)
T ss_pred ceEEEEEeccce-----------------------eeEEE-ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccc
Confidence 999999999832 22222 346678888888 789999999999999988765411
Q ss_pred ------CCCccccccccccCCCc--CeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee-eeeeEEEEEecC
Q 019117 274 ------PGEGTADILQKYPVPEC--DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR-LICFSLHVKYNP 342 (346)
Q Consensus 274 ------~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~sp 342 (346)
...........+.+|.+ .|+|++.+-|+ .+|++|+.||.+.|||+.+.+.+.... ..+.|+-+.++|
T Consensus 254 ~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg--tlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 254 AGVNQKGRHEENTQINVLVGHENESAITCLAISTDG--TLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred ccccccccccccceeeeeccccCCcceeEEEEecCc--cEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeec
Confidence 11223445667788887 99999999999 899999999999999999988776655 677777776644
No 110
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.9e-26 Score=172.89 Aligned_cols=284 Identities=14% Similarity=0.231 Sum_probs=204.2
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 108 (346)
.+|.+-|.|+.|.+ .|+.+|+|+.|+ |+|||..++.....+...- ..|.+.|..+.|+...-|+ .+|+++.|+
T Consensus 10 s~h~DlihdVs~D~----~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W-rah~~Si~rV~WAhPEfGq-vvA~cS~Dr 83 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDF----YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW-RAHDGSIWRVVWAHPEFGQ-VVATCSYDR 83 (361)
T ss_pred cCCcceeeeeeecc----cCceeeeccCCCcEEEEeccCCCCceEEeeeE-EecCCcEEEEEecCccccc-eEEEEecCC
Confidence 68999999999999 899999999999 9999975544322222111 2388999999999655677 999999999
Q ss_pred eEEEEEccCc---------ceeeeeccCCCceEEEEEeCC-CCceEEEeeCCCCEEEEecCCCeeEE------Eec----
Q 019117 109 IIRVIDVSNE---------KLHKSFVGHGDSINEIRTQPL-KPSLVVSASKDESVRLWNVQTGICIL------IFA---- 168 (346)
Q Consensus 109 ~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~------~~~---- 168 (346)
++.||+-... ....++......|++|.|.|. -+-.+++++.||.++||+....-.+. +++
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence 9999985211 134456667789999999993 24578999999999999875432222 221
Q ss_pred ccCCCCcceEEEEecCC--CCcEEEEEecC-----CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc
Q 019117 169 GAGGHRNEVLSVDFHPS--DIYRIASCGMD-----NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241 (346)
Q Consensus 169 ~~~~~~~~v~~~~~~~~--~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (346)
.+..+..+..|+.|+|. ...+|+.|+.+ +.+.||....... .-..+..+..|++
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r-------------------Kw~kva~L~d~~d 224 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR-------------------KWLKVAELPDHTD 224 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc-------------------eeeeehhcCCCCC
Confidence 12246677889999972 24567777655 4788887766221 0224556779999
Q ss_pred ceEEEEec---C---CEEEEEeecCeEEEEcCCCCCC-----------CCCCccccccccccCCCcCeeEEEEeecCCcc
Q 019117 242 YVDCNRWL---G---DFILSKSVDNEIVLWEPKMKEQ-----------SPGEGTADILQKYPVPECDIWFIKFSCDFHYN 304 (346)
Q Consensus 242 ~i~~~~~~---~---~~l~~~~~d~~i~iwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 304 (346)
+|+.++|. | .+|++++.|| |+||.+..... ....-....+..+..|.+.|+.+.|.-.| .
T Consensus 225 pI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG--t 301 (361)
T KOG2445|consen 225 PIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG--T 301 (361)
T ss_pred cceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee--e
Confidence 99999998 3 3799999999 99999985321 11112334566788899999999999999 8
Q ss_pred eEEEEcCCCcEEEEEcCCCC---cceeeeeeeeEEEEEec
Q 019117 305 AAAIGNREGKIFVWELQSSP---PVLIARLICFSLHVKYN 341 (346)
Q Consensus 305 ~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~s 341 (346)
.|++.+.||.|++|...-.. ....++..+++....|+
T Consensus 302 iLsStGdDG~VRLWkany~n~~kC~sv~~~e~~~~~~~~~ 341 (361)
T KOG2445|consen 302 ILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVTKPDFS 341 (361)
T ss_pred EEeecCCCceeeehhhhhhhhheeeeEEeccCCCCCcccc
Confidence 99999999999999764432 33344555555444443
No 111
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=3.4e-28 Score=188.96 Aligned_cols=246 Identities=13% Similarity=0.190 Sum_probs=197.1
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (346)
..+..+|.|..++|++++|.+ ++..+++++.|+ +++|+....+....+.+ |.+.|+++.|. .... .+
T Consensus 209 ~~~~~tLaGs~g~it~~d~d~----~~~~~iAas~d~~~r~Wnvd~~r~~~TLsG-----HtdkVt~ak~~--~~~~-~v 276 (459)
T KOG0288|consen 209 SELISTLAGSLGNITSIDFDS----DNKHVIAASNDKNLRLWNVDSLRLRHTLSG-----HTDKVTAAKFK--LSHS-RV 276 (459)
T ss_pred hhhhhhhhccCCCcceeeecC----CCceEEeecCCCceeeeeccchhhhhhhcc-----cccceeeehhh--cccc-ce
Confidence 667788899999999999998 667777777777 99999999888888875 78888888876 3343 59
Q ss_pred EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117 102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 181 (346)
Q Consensus 102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 181 (346)
++|+.|.+|++||+....+.+++. ....+.+|..+ ...+++|..|++|++||.++..+..... -.+.|+++.
T Consensus 277 Vsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~----~gg~vtSl~ 348 (459)
T KOG0288|consen 277 VSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVP----LGGRVTSLD 348 (459)
T ss_pred eeccccchhhhhhhhhhheecccc-ccccccceEec---ceeeeecccccceEEEeccCCceeeEee----cCcceeeEe
Confidence 999999999999999988887765 34556777775 4789999999999999999999999887 456999999
Q ss_pred ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeec
Q 019117 182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD 259 (346)
Q Consensus 182 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d 259 (346)
.++ ++..+++++.|.++.+.|+++........ -..+. .....+.+.|+ +.|+++|+.|
T Consensus 349 ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~s------------------A~g~k-~asDwtrvvfSpd~~YvaAGS~d 408 (459)
T KOG0288|consen 349 LSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFS------------------AEGFK-CASDWTRVVFSPDGSYVAAGSAD 408 (459)
T ss_pred ecc-CCeEEeeecCCCceeeeecccccEEEEee------------------ccccc-cccccceeEECCCCceeeeccCC
Confidence 998 88889999999999999999843211100 00011 11226777887 7899999999
Q ss_pred CeEEEEcCCCCCCCCCCccccccccccCCCc--CeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117 260 NEIVLWEPKMKEQSPGEGTADILQKYPVPEC--DIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (346)
Q Consensus 260 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~~l~~~~~dg~i~iwd 319 (346)
|.|+||++.+++ +...+..... .|++++|+|.| ..|++++.++.+.+|.
T Consensus 409 gsv~iW~v~tgK---------lE~~l~~s~s~~aI~s~~W~~sG--~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 409 GSVYIWSVFTGK---------LEKVLSLSTSNAAITSLSWNPSG--SGLLSADKQKAVTLWT 459 (459)
T ss_pred CcEEEEEccCce---------EEEEeccCCCCcceEEEEEcCCC--chhhcccCCcceEecC
Confidence 999999999987 4444444333 59999999999 6899999999999993
No 112
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=6.5e-28 Score=192.22 Aligned_cols=269 Identities=14% Similarity=0.223 Sum_probs=214.3
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCe
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI 109 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 109 (346)
-.|.+-|.++.+|. ..+.+.||+.++|+|||+........+..+.-...+.-+..+.+. |||+ .|++|+.-.+
T Consensus 416 L~HGEvVcAvtIS~----~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~--pdgr-tLivGGeast 488 (705)
T KOG0639|consen 416 LAHGEVVCAVTISN----PTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLL--PDGR-TLIVGGEAST 488 (705)
T ss_pred hccCcEEEEEEecC----CcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEec--CCCc-eEEeccccce
Confidence 35888899999986 568999999999999998754332222222111244455555555 9999 8999999999
Q ss_pred EEEEEccCccee--eeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117 110 IRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI 187 (346)
Q Consensus 110 i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 187 (346)
+.|||+...... ..+....-....++.+| +.+..+++..||.|.|||+++...++.|+ +|...+.|+..++ ++
T Consensus 489 lsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~Vrqfq---GhtDGascIdis~-dG 563 (705)
T KOG0639|consen 489 LSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQ---GHTDGASCIDISK-DG 563 (705)
T ss_pred eeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeeccc---CCCCCceeEEecC-CC
Confidence 999999876543 33333345678899999 88999999999999999999999999999 8999999999998 99
Q ss_pred cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEE
Q 019117 188 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLW 265 (346)
Q Consensus 188 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iw 265 (346)
..|-||+-|.+|+.||++....... . .....|.++.++ +++++.|-..+.+.+-
T Consensus 564 tklWTGGlDntvRcWDlregrqlqq-----------------------h-dF~SQIfSLg~cP~~dWlavGMens~vevl 619 (705)
T KOG0639|consen 564 TKLWTGGLDNTVRCWDLREGRQLQQ-----------------------H-DFSSQIFSLGYCPTGDWLAVGMENSNVEVL 619 (705)
T ss_pred ceeecCCCccceeehhhhhhhhhhh-----------------------h-hhhhhheecccCCCccceeeecccCcEEEE
Confidence 9999999999999999998432111 1 123456677666 8899999999988888
Q ss_pred cCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCC
Q 019117 266 EPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSV 345 (346)
Q Consensus 266 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~ 345 (346)
.....+ ...+..|+..|.++.|++.| +++++.+.|+.+..|...-|..+...+....|.++..|-|.+
T Consensus 620 h~skp~----------kyqlhlheScVLSlKFa~cG--kwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddk 687 (705)
T KOG0639|consen 620 HTSKPE----------KYQLHLHESCVLSLKFAYCG--KWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDK 687 (705)
T ss_pred ecCCcc----------ceeecccccEEEEEEecccC--ceeeecCchhhhhhccCccccceeeccccCcceeeeeccCce
Confidence 776543 34566688999999999999 799999999999999999998877777777889888888876
Q ss_pred C
Q 019117 346 Y 346 (346)
Q Consensus 346 ~ 346 (346)
|
T Consensus 688 y 688 (705)
T KOG0639|consen 688 Y 688 (705)
T ss_pred E
Confidence 5
No 113
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.96 E-value=1.7e-27 Score=183.16 Aligned_cols=213 Identities=17% Similarity=0.295 Sum_probs=173.7
Q ss_pred CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccC----------------cceeeeeccCCCceEEEEEeCCCCceEE
Q 019117 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN----------------EKLHKSFVGHGDSINEIRTQPLKPSLVV 145 (346)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 145 (346)
|.+.+..+....-++.. +.++-+..|.|+||++.. .+++.++.+|...-+.++|+|.....|+
T Consensus 150 h~g~~NRvr~~~~~~~~-~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEV-LCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred cccccceeeecccCCcc-eeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 34444444444223444 777788899999999843 2467888899999999999997667799
Q ss_pred EeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCC
Q 019117 146 SASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP 225 (346)
Q Consensus 146 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 225 (346)
+|..-+.|++|...++.-..--....+|...|-.++|+|.....|++|+.||+|+|||+|...
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~----------------- 291 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP----------------- 291 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCC-----------------
Confidence 999889999999988765444444447999999999999888999999999999999999943
Q ss_pred CccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCc
Q 019117 226 TKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY 303 (346)
Q Consensus 226 ~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 303 (346)
..+......|...|.-|.|+ -.+|++|+.||+++|||++..+ ...++..++.|..+|+++.|+|...
T Consensus 292 ----~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~------~~~pVA~fk~Hk~pItsieW~p~e~- 360 (440)
T KOG0302|consen 292 ----KKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFK------SGQPVATFKYHKAPITSIEWHPHED- 360 (440)
T ss_pred ----ccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhcc------CCCcceeEEeccCCeeEEEeccccC-
Confidence 22334458899999999999 3389999999999999999877 3358889999999999999999876
Q ss_pred ceEEEEcCCCcEEEEEcCCC
Q 019117 304 NAAAIGNREGKIFVWELQSS 323 (346)
Q Consensus 304 ~~l~~~~~dg~i~iwd~~~~ 323 (346)
..+++++.|..|.+||+.-.
T Consensus 361 s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 361 SVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred ceEEeccCCCcEEEEEeecc
Confidence 68999999999999999654
No 114
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=2.5e-29 Score=208.15 Aligned_cols=222 Identities=19% Similarity=0.324 Sum_probs=195.6
Q ss_pred CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC
Q 019117 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG 161 (346)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 161 (346)
|...+.++..- ..++ .+++|+.|..+-+|.+.....+..+.+|..+|.++.|++ ...+|++|+.+|+|++||+...
T Consensus 27 hsaav~~lk~~--~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeA 102 (825)
T KOG0267|consen 27 HSAAVGCLKIR--KSSR-SLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEA 102 (825)
T ss_pred hhhhhceeeee--ccce-eeccCCCceeeccccccCCchhheeeccCCcceeeecCc-chhhhcccccCCceeeeehhhh
Confidence 44555556553 4566 899999999999999988888888999999999999999 8899999999999999999999
Q ss_pred eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc
Q 019117 162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241 (346)
Q Consensus 162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (346)
+.++++. +|...+..+.|+| -+.+.++|+.|+.+++||++. ..+.+.+.+|..
T Consensus 103 k~vrtLt---gh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk-----------------------~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 103 KIVRTLT---GHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRK-----------------------KGCSHTYKSHTR 155 (825)
T ss_pred hhhhhhh---ccccCcceeeecc-ceEEeccccccccceehhhhc-----------------------cCceeeecCCcc
Confidence 9999888 8999999999999 888899999999999999997 457788888999
Q ss_pred ceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117 242 YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (346)
Q Consensus 242 ~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd 319 (346)
.+.++.|. |.++++++.|.+++|||+..++ .+..|..|++.+.++.|+|.. -++++|+.|+.+++||
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk---------~~~ef~~~e~~v~sle~hp~e--~Lla~Gs~d~tv~f~d 224 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK---------LSKEFKSHEGKVQSLEFHPLE--VLLAPGSSDRTVRFWD 224 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeecccccc---------cccccccccccccccccCchh--hhhccCCCCceeeeec
Confidence 99999999 7899999999999999999887 788999999999999999988 6899999999999999
Q ss_pred cCCCCcceeeee-eeeEEEEEecCCCC
Q 019117 320 LQSSPPVLIARL-ICFSLHVKYNPQSV 345 (346)
Q Consensus 320 ~~~~~~~~~~~~-~~~~~~~~~spdg~ 345 (346)
+++.+.+..... ...+.+.+|+|+|+
T Consensus 225 letfe~I~s~~~~~~~v~~~~fn~~~~ 251 (825)
T KOG0267|consen 225 LETFEVISSGKPETDGVRSLAFNPDGK 251 (825)
T ss_pred cceeEEeeccCCccCCceeeeecCCce
Confidence 998765443222 34588999999985
No 115
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=5.7e-26 Score=169.58 Aligned_cols=226 Identities=15% Similarity=0.293 Sum_probs=175.5
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCcee----------eeEeeeecCCCccceEEEEEEEcCCCC
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI----------AALQSYVDEDKEESFYTVSWACNVDGI 98 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (346)
+.|.+.|+++...+. .|+++++|+.|+ |.+||++..... ..+.......|.-.|..+.|-+...|
T Consensus 40 r~HgGsvNsL~id~t---egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG- 115 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLT---EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG- 115 (397)
T ss_pred ccCCCccceeeeccc---cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc-
Confidence 679999999999874 589999999999 999999754311 11122223356778888888854444
Q ss_pred cEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCC--CceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcc
Q 019117 99 PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLK--PSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE 176 (346)
Q Consensus 99 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 176 (346)
.+.+++.|.++++||.++.+....++ -.+.|.+-+++|.. ..++++|.+|-.|++.|+.+|.....+. +|...
T Consensus 116 -mFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls---GHr~~ 190 (397)
T KOG4283|consen 116 -MFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS---GHRDG 190 (397)
T ss_pred -eeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec---cccCc
Confidence 79999999999999999988877776 56788888888842 3578889999999999999999999999 89999
Q ss_pred eEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEE
Q 019117 177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL 254 (346)
Q Consensus 177 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~ 254 (346)
|.++.|+|.....|++|+.||.|++||++....-. ...+.... +. ...+..-..|.+.+..++|. +.+++
T Consensus 191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf----~~lD~hn~---k~-~p~~~~n~ah~gkvngla~tSd~~~l~ 262 (397)
T KOG4283|consen 191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCF----RVLDQHNT---KR-PPILKTNTAHYGKVNGLAWTSDARYLA 262 (397)
T ss_pred eEEEEeccCceeEEEecCCCceEEEEEeeccccee----EEeecccC---cc-Cccccccccccceeeeeeecccchhhh
Confidence 99999999778889999999999999999832110 00000000 00 11122456788999999998 88999
Q ss_pred EEeecCeEEEEcCCCCCC
Q 019117 255 SKSVDNEIVLWEPKMKEQ 272 (346)
Q Consensus 255 ~~~~d~~i~iwd~~~~~~ 272 (346)
+++.|..+++|+...++.
T Consensus 263 ~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 263 SCGTDDRIRVWNMESGRN 280 (397)
T ss_pred hccCccceEEeecccCcc
Confidence 999999999999998864
No 116
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.96 E-value=4.1e-27 Score=181.07 Aligned_cols=263 Identities=19% Similarity=0.292 Sum_probs=194.1
Q ss_pred eecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccC-------ce----eeeEeeeecCCCccceEEEEEEEc
Q 019117 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG-------GV----IAALQSYVDEDKEESFYTVSWACN 94 (346)
Q Consensus 27 ~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~-------~~----~~~~~~~~~~~~~~~v~~~~~~~~ 94 (346)
.....|.+.++.+.-++.. +..+.|+-+..| |.||++... +. ...-..|....|...-+.++|++.
T Consensus 145 ~~~i~h~g~~NRvr~~~~~--~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~ 222 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLG--NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPI 222 (440)
T ss_pred ccccccccccceeeecccC--CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccc
Confidence 3446788889988888743 446777777777 999997521 00 001112233447777888999865
Q ss_pred CCCCcEEEEeecCCeEEEEEccCcce---eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccC
Q 019117 95 VDGIPFLVAGGINGIIRVIDVSNEKL---HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG 171 (346)
Q Consensus 95 ~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 171 (346)
..|. |++|.--+.|++|...++.- ...+.+|+..|..++|+|.....|++||.||+|+|||++.+.....+.. .
T Consensus 223 ~~g~--LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-k 299 (440)
T KOG0302|consen 223 KTGR--LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-K 299 (440)
T ss_pred cccc--cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-e
Confidence 5664 88998889999999988752 2346679999999999998889999999999999999998832222211 1
Q ss_pred CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--
Q 019117 172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-- 249 (346)
Q Consensus 172 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 249 (346)
.|.+.|+-+.|+. ...+|++|+.||+++|||+|..+. ..++..+..|..+|+++.|+
T Consensus 300 Ah~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~--------------------~~pVA~fk~Hk~pItsieW~p~ 358 (440)
T KOG0302|consen 300 AHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKS--------------------GQPVATFKYHKAPITSIEWHPH 358 (440)
T ss_pred ccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccC--------------------CCcceeEEeccCCeeEEEeccc
Confidence 6999999999997 666999999999999999999553 46888999999999999999
Q ss_pred -CCEEEEEeecCeEEEEcCCCCCCCCC------C----ccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117 250 -GDFILSKSVDNEIVLWEPKMKEQSPG------E----GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (346)
Q Consensus 250 -~~~l~~~~~d~~i~iwd~~~~~~~~~------~----~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw 318 (346)
...|++++.|..|.+||+........ . ...+++.... ....+..+.|++.-. .+|++.+.|| +.||
T Consensus 359 e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiP-G~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 359 EDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIP-GLLVSTAIDG-FNVF 435 (440)
T ss_pred cCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCC-CeEEEecccc-eeEE
Confidence 56899999999999999975432100 0 0111111111 234677888998776 4888888888 4444
No 117
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=7.1e-27 Score=184.40 Aligned_cols=256 Identities=13% Similarity=0.187 Sum_probs=201.1
Q ss_pred CCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 019117 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (346)
Q Consensus 33 ~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 111 (346)
.++|.|++-+| .|.+|+.|.-.+ +++|.+.+|..+..+.. |=..|+++.|+ .||. +|++|+.||.|.
T Consensus 81 Pg~v~al~s~n----~G~~l~ag~i~g~lYlWelssG~LL~v~~a-----HYQ~ITcL~fs--~dgs-~iiTgskDg~V~ 148 (476)
T KOG0646|consen 81 PGPVHALASSN----LGYFLLAGTISGNLYLWELSSGILLNVLSA-----HYQSITCLKFS--DDGS-HIITGSKDGAVL 148 (476)
T ss_pred ccceeeeecCC----CceEEEeecccCcEEEEEeccccHHHHHHh-----hccceeEEEEe--CCCc-EEEecCCCccEE
Confidence 57799999988 788888885555 99999999998887754 77789888887 8898 999999999999
Q ss_pred EEEcc---------CcceeeeeccCCCceEEEEEeCC-CCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117 112 VIDVS---------NEKLHKSFVGHGDSINEIRTQPL-KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 181 (346)
Q Consensus 112 iwd~~---------~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 181 (346)
+|.+. +-++.+.+..|+-+|+++...+. ....++|+|.|.++++||+..+..+..+. .+..+.+++
T Consensus 149 vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~----fp~si~av~ 224 (476)
T KOG0646|consen 149 VWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT----FPSSIKAVA 224 (476)
T ss_pred EEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe----cCCcceeEE
Confidence 99873 23577888999999999999872 24589999999999999999999999986 889999999
Q ss_pred ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc--ceEEEEec--CCEEEEEe
Q 019117 182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN--YVDCNRWL--GDFILSKS 257 (346)
Q Consensus 182 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~--~~~l~~~~ 257 (346)
.+| .+..++.|+.+|.|.+.++........ +.. ..........+..+.+|.+ .|+|++.+ |.+|++|+
T Consensus 225 lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~------~v~-~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd 296 (476)
T KOG0646|consen 225 LDP-AERVVYIGTEEGKIFQNLLFKLSGQSA------GVN-QKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD 296 (476)
T ss_pred Ecc-cccEEEecCCcceEEeeehhcCCcccc------ccc-ccccccccceeeeeccccCCcceeEEEEecCccEEEeeC
Confidence 999 899999999999999998877332111 000 0111122345667788888 99999998 99999999
Q ss_pred ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117 258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (346)
Q Consensus 258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~ 322 (346)
.||.|.|||+.+.+ +++++....++|+.+.+.|-.+ ..+..-...-.+-.|++..
T Consensus 297 ~dg~VcvWdi~S~Q---------~iRtl~~~kgpVtnL~i~~~~~-~~~l~~~~~ps~~~~~lkr 351 (476)
T KOG0646|consen 297 EDGKVCVWDIYSKQ---------CIRTLQTSKGPVTNLQINPLER-GIILFEHKQPSLPNPHLKR 351 (476)
T ss_pred CCCCEEEEecchHH---------HHHHHhhhccccceeEeecccc-ceecccccCccCCchHhhc
Confidence 99999999999877 6777766678899998866543 1233233334455555543
No 118
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.5e-27 Score=172.10 Aligned_cols=220 Identities=21% Similarity=0.380 Sum_probs=174.1
Q ss_pred cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (346)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (346)
.+.+++.+|+||.+||+.++|.. |..|.+||+++.|+ |.||....+ .......+ ..|...|++++|+++.-|-
T Consensus 44 ~~s~ll~~L~Gh~GPVwqv~wah--Pk~G~iLAScsYDgkVIiWke~~g-~w~k~~e~--~~h~~SVNsV~wapheygl- 117 (299)
T KOG1332|consen 44 GQSKLLAELTGHSGPVWKVAWAH--PKFGTILASCSYDGKVIIWKEENG-RWTKAYEH--AAHSASVNSVAWAPHEYGL- 117 (299)
T ss_pred CCceeeeEecCCCCCeeEEeecc--cccCcEeeEeecCceEEEEecCCC-chhhhhhh--hhhcccceeecccccccce-
Confidence 33578899999999999999974 56899999999999 999996665 33333323 4589999999999887787
Q ss_pred EEEEeecCCeEEEEEccCc---ceeeeeccCCCceEEEEEeCCC--C-----------ceEEEeeCCCCEEEEecCCCee
Q 019117 100 FLVAGGINGIIRVIDVSNE---KLHKSFVGHGDSINEIRTQPLK--P-----------SLVVSASKDESVRLWNVQTGIC 163 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~--~-----------~~l~s~~~d~~i~iwd~~~~~~ 163 (346)
.|++++.||.|.|.+.++. ...+....|.-.|+++.|.|.. + ..|++|+.|..|+||+..+++-
T Consensus 118 ~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w 197 (299)
T KOG1332|consen 118 LLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW 197 (299)
T ss_pred EEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcch
Confidence 9999999999999998765 2334556799999999999931 2 5699999999999999987632
Q ss_pred --EEEecccCCCCcceEEEEecCCC---CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee
Q 019117 164 --ILIFAGAGGHRNEVLSVDFHPSD---IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 238 (346)
Q Consensus 164 --~~~~~~~~~~~~~v~~~~~~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (346)
...+. +|...|+.++|.|.. ...|+++++||++.||..+.... ......+..
T Consensus 198 ~~e~~l~---~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e--------------------~wk~tll~~ 254 (299)
T KOG1332|consen 198 KLERTLE---GHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE--------------------PWKKTLLEE 254 (299)
T ss_pred hhhhhhh---hcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC--------------------ccccccccc
Confidence 23344 899999999999943 36899999999999998874111 112223334
Q ss_pred cccceEEEEec--CCEEEEEeecCeEEEEcCCC
Q 019117 239 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKM 269 (346)
Q Consensus 239 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~ 269 (346)
.+..+..+.|+ |+.|++++.|+.|.+|.-+.
T Consensus 255 f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 255 FPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred CCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 56778999998 99999999999999997654
No 119
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5e-26 Score=193.51 Aligned_cols=267 Identities=14% Similarity=0.184 Sum_probs=207.3
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccC-ceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG-GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 107 (346)
.+|...-+.|+|.| +|+++.+++.|+ |++|+.... +....+.. ++..+.+++. .+. +|++|+.+
T Consensus 10 yaht~G~t~i~~d~----~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~-----~g~~v~~ia~----~s~-~f~~~s~~ 75 (933)
T KOG1274|consen 10 YAHTGGLTLICYDP----DGEFICTCGSDGDIRKWKTNSDEEEPETIDI-----SGELVSSIAC----YSN-HFLTGSEQ 75 (933)
T ss_pred hhccCceEEEEEcC----CCCEEEEecCCCceEEeecCCcccCCchhhc-----cCceeEEEee----ccc-ceEEeecc
Confidence 46888899999999 789999999999 999997665 33333321 4555655554 344 89999999
Q ss_pred CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI 187 (346)
Q Consensus 108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 187 (346)
++|.+|.+.+++.-..+..-+-++.+++|+- ++.+++.||+|-.|++-++.+......++ +|.++|.++.|+| .+
T Consensus 76 ~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lr---gh~apVl~l~~~p-~~ 150 (933)
T KOG1274|consen 76 NTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLR---GHDAPVLQLSYDP-KG 150 (933)
T ss_pred ceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeec---ccCCceeeeeEcC-CC
Confidence 9999999998876655655677899999998 89999999999999999999999999998 8999999999999 99
Q ss_pred cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeec-ccceEEEEec--CCEEEEEeecCeEEE
Q 019117 188 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH-SNYVDCNRWL--GDFILSKSVDNEIVL 264 (346)
Q Consensus 188 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~--~~~l~~~~~d~~i~i 264 (346)
++|++.+.||.|++||+.++....... ... ...... ...+..++|+ +..++..+.|+.|++
T Consensus 151 ~fLAvss~dG~v~iw~~~~~~~~~tl~----~v~------------k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkv 214 (933)
T KOG1274|consen 151 NFLAVSSCDGKVQIWDLQDGILSKTLT----GVD------------KDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKV 214 (933)
T ss_pred CEEEEEecCceEEEEEcccchhhhhcc----cCC------------ccccccccceeeeeeecCCCCeEEeeccCCeEEE
Confidence 999999999999999999833211000 000 000111 3445567777 678888999999999
Q ss_pred EcCCCCCCCCCCccccccccccC--CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecC
Q 019117 265 WEPKMKEQSPGEGTADILQKYPV--PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNP 342 (346)
Q Consensus 265 wd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~sp 342 (346)
|+..+... ...+.. +...+..+.|+|.| .|||+++.||.|.|||+++-+ .......|.+++|-|
T Consensus 215 y~r~~we~---------~f~Lr~~~~ss~~~~~~wsPnG--~YiAAs~~~g~I~vWnv~t~~---~~~~~~~Vc~~aw~p 280 (933)
T KOG1274|consen 215 YSRKGWEL---------QFKLRDKLSSSKFSDLQWSPNG--KYIAASTLDGQILVWNVDTHE---RHEFKRAVCCEAWKP 280 (933)
T ss_pred EccCCcee---------heeecccccccceEEEEEcCCC--cEEeeeccCCcEEEEecccch---hccccceeEEEecCC
Confidence 99998873 333322 34458999999999 799999999999999999832 233444588899998
Q ss_pred CCC
Q 019117 343 QSV 345 (346)
Q Consensus 343 dg~ 345 (346)
++.
T Consensus 281 ~~n 283 (933)
T KOG1274|consen 281 NAN 283 (933)
T ss_pred CCC
Confidence 864
No 120
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.4e-27 Score=194.28 Aligned_cols=264 Identities=15% Similarity=0.220 Sum_probs=207.8
Q ss_pred ceeeeccccccc-cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc--eeeeEeeeecCCCcc
Q 019117 9 EPLVGSLTPSKK-REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG--VIAALQSYVDEDKEE 84 (346)
Q Consensus 9 ~~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~--~~~~~~~~~~~~~~~ 84 (346)
....|+...... ++-.....++.|.+.|++++..- +++.|++++.|. |++|+...+. ++..+.. |.+
T Consensus 48 ~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~----~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~-----H~D 118 (735)
T KOG0308|consen 48 IIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG----NGKTLISASSDTTVKVWNAHKDNTFCMSTIRT-----HKD 118 (735)
T ss_pred eEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc----CCCceEEecCCceEEEeecccCcchhHhhhhc-----ccc
Confidence 344455443222 22334677899999999999987 778999999998 9999988774 5555554 777
Q ss_pred ceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc--ee--------eeec-cCCCceEEEEEeCCCCceEEEeeCCCCE
Q 019117 85 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LH--------KSFV-GHGDSINEIRTQPLKPSLVVSASKDESV 153 (346)
Q Consensus 85 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~--------~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i 153 (346)
-|.|++.. -++.. ++|+|+-|+.|.+||++++. .+ ..+. ++...|++++.++ .+..|++|+..+.+
T Consensus 119 YVkcla~~-ak~~~-lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~l 195 (735)
T KOG0308|consen 119 YVKCLAYI-AKNNE-LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDL 195 (735)
T ss_pred hheeeeec-ccCce-eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccce
Confidence 88888883 15555 99999999999999999772 22 2233 7888999999999 88999999999999
Q ss_pred EEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceece
Q 019117 154 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 233 (346)
Q Consensus 154 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (346)
++||.++++.+..++ +|...|+.+..++ +|..+++++.||+|++||+.. +.++
T Consensus 196 r~wDprt~~kimkLr---GHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgq-----------------------QrCl 248 (735)
T KOG0308|consen 196 RLWDPRTCKKIMKLR---GHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQ-----------------------QRCL 248 (735)
T ss_pred EEeccccccceeeee---ccccceEEEEEcC-CCCeEeecCCCceEEeeeccc-----------------------ccee
Confidence 999999999999999 8999999999997 999999999999999999998 7788
Q ss_pred EEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcC
Q 019117 234 FIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR 311 (346)
Q Consensus 234 ~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~ 311 (346)
.++..|.+.|.++..+ =..+.+|+.||.|..=|+++... ...+-....+|..+..+.+.+ -+-+++.
T Consensus 249 ~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~---------~tlick~daPv~~l~~~~~~~--~~WvtTt 317 (735)
T KOG0308|consen 249 ATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK---------STLICKEDAPVLKLHLHEHDN--SVWVTTT 317 (735)
T ss_pred eeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchh---------heEeecCCCchhhhhhccccC--Cceeeec
Confidence 9999999999999988 46899999999999999998542 111122234555555554332 2356667
Q ss_pred CCcEEEEEcCC
Q 019117 312 EGKIFVWELQS 322 (346)
Q Consensus 312 dg~i~iwd~~~ 322 (346)
|+.|+-|..+-
T Consensus 318 ds~I~rW~~~~ 328 (735)
T KOG0308|consen 318 DSSIKRWKLEP 328 (735)
T ss_pred cccceecCCcc
Confidence 78888887654
No 121
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.2e-25 Score=168.00 Aligned_cols=225 Identities=15% Similarity=0.232 Sum_probs=179.2
Q ss_pred CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeC--CCCEEEEecC
Q 019117 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK--DESVRLWNVQ 159 (346)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--d~~i~iwd~~ 159 (346)
....+.++.|+ ++|. ++++++.|.++++||..+++.++++..+.-.+..++|.. ....++.++. |.+|+..++.
T Consensus 13 ~~~~i~sl~fs--~~G~-~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 13 TNGKINSLDFS--DDGL-LLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIRYLSLH 88 (311)
T ss_pred CCCceeEEEec--CCCC-EEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceEEEEee
Confidence 35567666665 9999 999999999999999999999999998888899999987 5666666665 8899999999
Q ss_pred CCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeec
Q 019117 160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 239 (346)
Q Consensus 160 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (346)
+.+.++.|. ||...|.+++.+| .++.+++++.|++|++||++.. .+...+...
T Consensus 89 dNkylRYF~---GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~-----------------------~cqg~l~~~ 141 (311)
T KOG1446|consen 89 DNKYLRYFP---GHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVK-----------------------KCQGLLNLS 141 (311)
T ss_pred cCceEEEcC---CCCceEEEEEecC-CCCeEEecccCCeEEeeEecCC-----------------------CCceEEecC
Confidence 999999999 8999999999999 7799999999999999999972 222333333
Q ss_pred ccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCcccccccccc---CCCcCeeEEEEeecCCcceEEEEcCCCcEE
Q 019117 240 SNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP---VPECDIWFIKFSCDFHYNAAAIGNREGKIF 316 (346)
Q Consensus 240 ~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~ 316 (346)
..+|.+..-.|-++|++.....|++||++.....+ ...+. ......+.+.||||| ++++.+...+.++
T Consensus 142 ~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgP-------F~tf~i~~~~~~ew~~l~FS~dG--K~iLlsT~~s~~~ 212 (311)
T KOG1446|consen 142 GRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGP-------FTTFSITDNDEAEWTDLEFSPDG--KSILLSTNASFIY 212 (311)
T ss_pred CCcceeECCCCcEEEEecCCCeEEEEEecccCCCC-------ceeEccCCCCccceeeeEEcCCC--CEEEEEeCCCcEE
Confidence 33343333337788888888899999999875322 22222 335688999999999 6888889999999
Q ss_pred EEEcCCCCcceeeeeeee----EEEEEecCCCCC
Q 019117 317 VWELQSSPPVLIARLICF----SLHVKYNPQSVY 346 (346)
Q Consensus 317 iwd~~~~~~~~~~~~~~~----~~~~~~spdg~~ 346 (346)
+.|.-+|.....+..... .....|+|||+|
T Consensus 213 ~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~F 246 (311)
T KOG1446|consen 213 LLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKF 246 (311)
T ss_pred EEEccCCcEeeeEeeccCCCCcceeEEECCCCcE
Confidence 999999986665554332 357899999975
No 122
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=5.1e-27 Score=187.18 Aligned_cols=237 Identities=15% Similarity=0.193 Sum_probs=198.5
Q ss_pred CCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeE
Q 019117 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII 110 (346)
Q Consensus 32 h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 110 (346)
..+-|+++.+.| +|+-|++|+.-. +.|||+......-... -......|.+++.+||.+ ..+++..||.|
T Consensus 464 rdnyiRSckL~p----dgrtLivGGeastlsiWDLAapTprikae-----ltssapaCyALa~spDak-vcFsccsdGnI 533 (705)
T KOG0639|consen 464 RDNYIRSCKLLP----DGRTLIVGGEASTLSIWDLAAPTPRIKAE-----LTSSAPACYALAISPDAK-VCFSCCSDGNI 533 (705)
T ss_pred cccceeeeEecC----CCceEEeccccceeeeeeccCCCcchhhh-----cCCcchhhhhhhcCCccc-eeeeeccCCcE
Confidence 456789999999 789999998866 9999998655422211 122334455666679999 99999999999
Q ss_pred EEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEE
Q 019117 111 RVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI 190 (346)
Q Consensus 111 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 190 (346)
.|||+.+...++.+++|++.+.||.+++ ++..|.+|+-|.+|+.||+++++.+.... ..+.|.++.++| .+.++
T Consensus 534 ~vwDLhnq~~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhd----F~SQIfSLg~cP-~~dWl 607 (705)
T KOG0639|consen 534 AVWDLHNQTLVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHD----FSSQIFSLGYCP-TGDWL 607 (705)
T ss_pred EEEEcccceeeecccCCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhh----hhhhheecccCC-Cccce
Confidence 9999999999999999999999999999 89999999999999999999998887765 788999999999 99999
Q ss_pred EEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCC
Q 019117 191 ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPK 268 (346)
Q Consensus 191 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~ 268 (346)
+.|-.++.+.+..... ...+.+..|+..|.++.|. |+++++.+.|+.+..|...
T Consensus 608 avGMens~vevlh~sk------------------------p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtP 663 (705)
T KOG0639|consen 608 AVGMENSNVEVLHTSK------------------------PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 663 (705)
T ss_pred eeecccCcEEEEecCC------------------------ccceeecccccEEEEEEecccCceeeecCchhhhhhccCc
Confidence 9999999998887766 2345677899999999998 9999999999999999988
Q ss_pred CCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117 269 MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 320 (346)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~ 320 (346)
.+. .+...+ ....|.++.+|.|. +++++|+.|....+|.+
T Consensus 664 yGa---------siFqsk-E~SsVlsCDIS~dd--kyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 664 YGA---------SIFQSK-ESSSVLSCDISFDD--KYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccc---------ceeecc-ccCcceeeeeccCc--eEEEecCCCcceEEEEE
Confidence 765 222222 24589999999999 79999999999888875
No 123
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.95 E-value=1.5e-26 Score=189.70 Aligned_cols=145 Identities=18% Similarity=0.208 Sum_probs=117.6
Q ss_pred CcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---C
Q 019117 174 RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---G 250 (346)
Q Consensus 174 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~ 250 (346)
...|+.+.|.|.+...|+.++.||.|++|.+...... +....+...+..|...|+++.|+ .
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~----------------e~~~tPe~~lt~h~eKI~slRfHPLAa 690 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP----------------ENEMTPEKILTIHGEKITSLRFHPLAA 690 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCC----------------cccCCcceeeecccceEEEEEecchhh
Confidence 3568889999988899999999999999999873221 11234566788999999999999 7
Q ss_pred CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee
Q 019117 251 DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR 330 (346)
Q Consensus 251 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (346)
+.|++++.|-+|++||+.+.+ ....+.+|.+.|..++||||| +.+|+.+.||+|++|+-.+++. .+++
T Consensus 691 dvLa~asyd~Ti~lWDl~~~~---------~~~~l~gHtdqIf~~AWSpdG--r~~AtVcKDg~~rVy~Prs~e~-pv~E 758 (1012)
T KOG1445|consen 691 DVLAVASYDSTIELWDLANAK---------LYSRLVGHTDQIFGIAWSPDG--RRIATVCKDGTLRVYEPRSREQ-PVYE 758 (1012)
T ss_pred hHhhhhhccceeeeeehhhhh---------hhheeccCcCceeEEEECCCC--cceeeeecCceEEEeCCCCCCC-cccc
Confidence 899999999999999999887 677889999999999999999 7999999999999999988653 2222
Q ss_pred eee----eEEEEEecCCCCC
Q 019117 331 LIC----FSLHVKYNPQSVY 346 (346)
Q Consensus 331 ~~~----~~~~~~~spdg~~ 346 (346)
-++ .--++.|--||+|
T Consensus 759 g~gpvgtRgARi~wacdgr~ 778 (1012)
T KOG1445|consen 759 GKGPVGTRGARILWACDGRI 778 (1012)
T ss_pred CCCCccCcceeEEEEecCcE
Confidence 222 2345777777664
No 124
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=6.9e-28 Score=199.72 Aligned_cols=236 Identities=19% Similarity=0.305 Sum_probs=202.9
Q ss_pred eecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (346)
Q Consensus 27 ~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 105 (346)
+.+..|...|.++..-. .++.+++|+.+. +-+|.+.+-..+..+. .|...|.++.|. ++.. +|++|+
T Consensus 22 ~~~~~hsaav~~lk~~~----s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~-----~hespIeSl~f~--~~E~-Llaags 89 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRK----SSRSLVTGGEDEKVNLWAIGKPNAITSLT-----GHESPIESLTFD--TSER-LLAAGS 89 (825)
T ss_pred hhhhhhhhhhceeeeec----cceeeccCCCceeeccccccCCchhheee-----ccCCcceeeecC--cchh-hhcccc
Confidence 55678899999998744 678999999998 7799987766655544 388889988887 6666 999999
Q ss_pred cCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCC
Q 019117 106 INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS 185 (346)
Q Consensus 106 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 185 (346)
.+|+|++||+..++.++++.+|...+.++.|+| -+.++++|+.|+.+++||.+...+...+. +|...|..+.|+|
T Consensus 90 asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~---s~~~vv~~l~lsP- 164 (825)
T KOG0267|consen 90 ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYK---SHTRVVDVLRLSP- 164 (825)
T ss_pred cCCceeeeehhhhhhhhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCceeeec---CCcceeEEEeecC-
Confidence 999999999999999999999999999999999 88999999999999999999888999998 7999999999999
Q ss_pred CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEE
Q 019117 186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIV 263 (346)
Q Consensus 186 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~ 263 (346)
+|.++++++.|.++++||+.. +..+..+..|+..+.++.|+ .-++++|+.|++++
T Consensus 165 ~Gr~v~~g~ed~tvki~d~~a-----------------------gk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~ 221 (825)
T KOG0267|consen 165 DGRWVASGGEDNTVKIWDLTA-----------------------GKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVR 221 (825)
T ss_pred CCceeeccCCcceeeeecccc-----------------------cccccccccccccccccccCchhhhhccCCCCceee
Confidence 999999999999999999987 44566778899999999988 45788999999999
Q ss_pred EEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCC
Q 019117 264 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG 313 (346)
Q Consensus 264 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg 313 (346)
+||+++.+ .+.........|.+.+|+|++ ..+++|..+.
T Consensus 222 f~dletfe---------~I~s~~~~~~~v~~~~fn~~~--~~~~~G~q~s 260 (825)
T KOG0267|consen 222 FWDLETFE---------VISSGKPETDGVRSLAFNPDG--KIVLSGEQIS 260 (825)
T ss_pred eeccceeE---------EeeccCCccCCceeeeecCCc--eeeecCchhh
Confidence 99999765 455555556789999999999 5677766543
No 125
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=2.4e-26 Score=183.80 Aligned_cols=249 Identities=13% Similarity=0.238 Sum_probs=180.9
Q ss_pred CCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEee-------eecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117 32 GKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQS-------YVDEDKEESFYTVSWACNVDGIPFLVAG 104 (346)
Q Consensus 32 h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 104 (346)
....|+++.|+|+. +.+|+..+....+|+|...-......++ ....+|...+++-+|. |..+..++++
T Consensus 213 E~h~i~sl~ys~Tg---~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~wh--P~~k~~FlT~ 287 (641)
T KOG0772|consen 213 ETHQINSLQYSVTG---DQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWH--PDNKEEFLTC 287 (641)
T ss_pred cccccceeeecCCC---CeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccc--cCcccceEEe
Confidence 34569999999932 3455555555599999543333332221 2234577788888887 8777789999
Q ss_pred ecCCeEEEEEccCcc-eeeeec-----cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe--eEEEecccCCCCc-
Q 019117 105 GINGIIRVIDVSNEK-LHKSFV-----GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI--CILIFAGAGGHRN- 175 (346)
Q Consensus 105 ~~dg~i~iwd~~~~~-~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~- 175 (346)
+.||+++|||++..+ .++.++ +-.-+++.++|++ ++.+||+|..||.|.+|+..... +...++ .+|..
T Consensus 288 s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk--~AH~~g 364 (641)
T KOG0772|consen 288 SYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVK--DAHLPG 364 (641)
T ss_pred cCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEee--eccCCC
Confidence 999999999997654 333333 2234789999999 89999999999999999975432 222333 26766
Q ss_pred -ceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee--cccceEEEEec--C
Q 019117 176 -EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV--HSNYVDCNRWL--G 250 (346)
Q Consensus 176 -~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~--~ 250 (346)
.|+|+.|++ ++++|++-+.|+++++||+++++.. +....+ ....-+.++|+ .
T Consensus 365 ~~Itsi~FS~-dg~~LlSRg~D~tLKvWDLrq~kkp----------------------L~~~tgL~t~~~~tdc~FSPd~ 421 (641)
T KOG0772|consen 365 QDITSISFSY-DGNYLLSRGFDDTLKVWDLRQFKKP----------------------LNVRTGLPTPFPGTDCCFSPDD 421 (641)
T ss_pred CceeEEEecc-ccchhhhccCCCceeeeeccccccc----------------------hhhhcCCCccCCCCccccCCCc
Confidence 999999998 9999999999999999999995532 221111 22234556777 5
Q ss_pred CEEEEEee------cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117 251 DFILSKSV------DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (346)
Q Consensus 251 ~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~ 322 (346)
+++++|.. .|++.+||..+.+ .++++......|..+.|+|-- +.+.+|+.||.+++|--.+
T Consensus 422 kli~TGtS~~~~~~~g~L~f~d~~t~d---------~v~ki~i~~aSvv~~~WhpkL--NQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 422 KLILTGTSAPNGMTAGTLFFFDRMTLD---------TVYKIDISTASVVRCLWHPKL--NQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred eEEEecccccCCCCCceEEEEecccee---------eEEEecCCCceEEEEeecchh--hheeeecCCCceEEEECcc
Confidence 57777753 5789999998876 677777778889999999987 6788889999999975444
No 126
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=2.7e-24 Score=176.14 Aligned_cols=268 Identities=16% Similarity=0.174 Sum_probs=182.7
Q ss_pred eeeeecccCCCceEEEEEEeecCCCccEE-EEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117 24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVF-ATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (346)
Q Consensus 24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~l-a~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (346)
+....+.++. .+.+++|+| ++..+ ++++.++ |++||..+++....+.. ...+..+ .++|+++ .+
T Consensus 22 ~~~~~~~~~~-~~~~l~~~~----dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~------~~~~~~~--~~~~~g~-~l 87 (300)
T TIGR03866 22 EVTRTFPVGQ-RPRGITLSK----DGKLLYVCASDSDTIQVIDLATGEVIGTLPS------GPDPELF--ALHPNGK-IL 87 (300)
T ss_pred ceEEEEECCC-CCCceEECC----CCCEEEEEECCCCeEEEEECCCCcEEEeccC------CCCccEE--EECCCCC-EE
Confidence 3455555554 367899998 56655 5666665 99999888776554432 1223334 4458888 55
Q ss_pred -EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCC-CEEEEecCCCeeEEEecccCCCCcceEE
Q 019117 102 -VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE-SVRLWNVQTGICILIFAGAGGHRNEVLS 179 (346)
Q Consensus 102 -~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 179 (346)
++++.++.|++||+.+.+.+..+.. ...+.+++|+| ++.++++++.++ .+.+||.++++....+. ....+.+
T Consensus 88 ~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~----~~~~~~~ 161 (300)
T TIGR03866 88 YIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL----VDQRPRF 161 (300)
T ss_pred EEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE----cCCCccE
Confidence 4556689999999998887777653 33468899999 888888887765 46778998887766554 3345678
Q ss_pred EEecCCCCcEE-EEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc--ceEEEEec--CCEEE
Q 019117 180 VDFHPSDIYRI-ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN--YVDCNRWL--GDFIL 254 (346)
Q Consensus 180 ~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~--~~~l~ 254 (346)
++|+| ++.++ +++..++.|++||+.+.+........ ....+.. ....+.|+ +++++
T Consensus 162 ~~~s~-dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~------------------~~~~~~~~~~~~~i~~s~dg~~~~ 222 (300)
T TIGR03866 162 AEFTA-DGKELWVSSEIGGTVSVIDVATRKVIKKITFE------------------IPGVHPEAVQPVGIKLTKDGKTAF 222 (300)
T ss_pred EEECC-CCCEEEEEcCCCCEEEEEEcCcceeeeeeeec------------------ccccccccCCccceEECCCCCEEE
Confidence 99998 66666 45556899999999874321110000 0000111 12345566 66644
Q ss_pred E-EeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEE-cCCCcEEEEEcCCCCcceeeeee
Q 019117 255 S-KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG-NREGKIFVWELQSSPPVLIARLI 332 (346)
Q Consensus 255 ~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~ 332 (346)
+ .+.++.+.+||+++++ .+..+. +...+.+++|+|++ .+|+++ +.+|.|.+||+.+++.+..+.+.
T Consensus 223 ~~~~~~~~i~v~d~~~~~---------~~~~~~-~~~~~~~~~~~~~g--~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 223 VALGPANRVAVVDAKTYE---------VLDYLL-VGQRVWQLAFTPDE--KYLLTTNGVSNDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred EEcCCCCeEEEEECCCCc---------EEEEEE-eCCCcceEEECCCC--CEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence 4 4557789999998765 222222 23468899999999 566665 57999999999999988888888
Q ss_pred eeEEEEEecC
Q 019117 333 CFSLHVKYNP 342 (346)
Q Consensus 333 ~~~~~~~~sp 342 (346)
..++.++++|
T Consensus 291 ~~~~~~~~~~ 300 (300)
T TIGR03866 291 RLPWGVVVRP 300 (300)
T ss_pred cccceeEeCC
Confidence 8889999987
No 127
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.95 E-value=8.8e-26 Score=184.84 Aligned_cols=277 Identities=18% Similarity=0.240 Sum_probs=193.9
Q ss_pred EEEEEEeecCCCccEEEEEcCCc-EEEEEeccCcee-eeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEE
Q 019117 37 YAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI-AALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVID 114 (346)
Q Consensus 37 ~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd 114 (346)
.+..|++ -++...+||.+.+++ |.++|...-... +..+-.....|...|..+.|. | |+..|++++.|.++++||
T Consensus 53 f~~sFs~-~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wa--p-ge~~lVsasGDsT~r~Wd 128 (720)
T KOG0321|consen 53 FADSFSA-APNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWA--P-GESLLVSASGDSTIRPWD 128 (720)
T ss_pred ccccccC-CCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccC--C-CceeEEEccCCceeeeee
Confidence 3477877 344678999999998 999997643322 111112223588999999998 6 555999999999999999
Q ss_pred ccCcceeee--eccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe--------------------eEEEe----c
Q 019117 115 VSNEKLHKS--FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI--------------------CILIF----A 168 (346)
Q Consensus 115 ~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--------------------~~~~~----~ 168 (346)
+++.+++.. +.+|.+.|.+++|.|.+...|++|+.||.|.|||++... +...+ .
T Consensus 129 vk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~ 208 (720)
T KOG0321|consen 129 VKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR 208 (720)
T ss_pred eccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence 999998876 899999999999999999999999999999999997432 00000 0
Q ss_pred ccCCCCcc----eEEEEecCCCCcEEEEEec-CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeec---c
Q 019117 169 GAGGHRNE----VLSVDFHPSDIYRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH---S 240 (346)
Q Consensus 169 ~~~~~~~~----v~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 240 (346)
...++... |+.+.|- |...|++++. |+.|++||++......... ......+..| .
T Consensus 209 k~kA~s~ti~ssvTvv~fk--De~tlaSaga~D~~iKVWDLRk~~~~~r~e---------------p~~~~~~~t~skrs 271 (720)
T KOG0321|consen 209 KWKAASNTIFSSVTVVLFK--DESTLASAGAADSTIKVWDLRKNYTAYRQE---------------PRGSDKYPTHSKRS 271 (720)
T ss_pred ccccccCceeeeeEEEEEe--ccceeeeccCCCcceEEEeecccccccccC---------------CCcccCccCcccce
Confidence 00123333 4445553 7888998888 9999999999844322111 1112222223 3
Q ss_pred cceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcC--eeEEEEeecCCcceEEEEcCCCcEE
Q 019117 241 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD--IWFIKFSCDFHYNAAAIGNREGKIF 316 (346)
Q Consensus 241 ~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~~~l~~~~~dg~i~ 316 (346)
..+.++..+ |.+|.+.+.|+.|.+|++.+.... ++..+.++... -..-..+||+ .++++|+.|...+
T Consensus 272 ~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s-------P~~~~sg~~~~sf~vks~lSpd~--~~l~SgSsd~~ay 342 (720)
T KOG0321|consen 272 VGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS-------PVAEFSGKLNSSFYVKSELSPDD--CSLLSGSSDEQAY 342 (720)
T ss_pred eeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC-------chhhccCcccceeeeeeecCCCC--ceEeccCCCccee
Confidence 456667666 888888888999999999887532 33344433211 1122478888 7999999999999
Q ss_pred EEEcCCCCcc--eeeeeeeeEEEEEecCC
Q 019117 317 VWELQSSPPV--LIARLICFSLHVKYNPQ 343 (346)
Q Consensus 317 iwd~~~~~~~--~~~~~~~~~~~~~~spd 343 (346)
+|.+.+-+.- ...-+.-.+++++|.|.
T Consensus 343 iw~vs~~e~~~~~l~Ght~eVt~V~w~pS 371 (720)
T KOG0321|consen 343 IWVVSSPEAPPALLLGHTREVTTVRWLPS 371 (720)
T ss_pred eeeecCccCChhhhhCcceEEEEEeeccc
Confidence 9999886532 23334455888999874
No 128
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.9e-24 Score=175.82 Aligned_cols=254 Identities=15% Similarity=0.247 Sum_probs=201.6
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 108 (346)
.-...+|.++||+. ..+.||.+-.++ |.+|++..+-.....-. ......|..++|+ +.+ .|.+.+.+|
T Consensus 22 d~~Ps~I~slA~s~----kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~---g~~drsIE~L~W~--e~~--RLFS~g~sg 90 (691)
T KOG2048|consen 22 DYKPSEIVSLAYSH----KSNQLAVSRTDGNIEIWNLSNNWFLEPVIH---GPEDRSIESLAWA--EGG--RLFSSGLSG 90 (691)
T ss_pred eeeccceEEEEEec----cCCceeeeccCCcEEEEccCCCceeeEEEe---cCCCCceeeEEEc--cCC--eEEeecCCc
Confidence 44578899999998 556788888888 99999887554333221 2467889999998 555 588999999
Q ss_pred eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCc
Q 019117 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY 188 (346)
Q Consensus 109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 188 (346)
.|.-||+.++++...+....+.|++++.+| .+..++.|++||.+..++...++...... .....+.|.+++|+| ++.
T Consensus 91 ~i~EwDl~~lk~~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~-l~rq~sRvLslsw~~-~~~ 167 (691)
T KOG2048|consen 91 SITEWDLHTLKQKYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRS-LMRQKSRVLSLSWNP-TGT 167 (691)
T ss_pred eEEEEecccCceeEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEee-cccccceEEEEEecC-Ccc
Confidence 999999999999999999999999999999 88999999999988888887666544322 113568999999999 888
Q ss_pred EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee-cccceEEEEec-CCEEEEEeecCeEEEEc
Q 019117 189 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-HSNYVDCNRWL-GDFILSKSVDNEIVLWE 266 (346)
Q Consensus 189 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~-~~~l~~~~~d~~i~iwd 266 (346)
.+++|+.||.|++||............ .+..+.. .+--|.++.|- ...|++|...|+|.+||
T Consensus 168 ~i~~Gs~Dg~Iriwd~~~~~t~~~~~~----------------~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd 231 (691)
T KOG2048|consen 168 KIAGGSIDGVIRIWDVKSGQTLHIITM----------------QLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWD 231 (691)
T ss_pred EEEecccCceEEEEEcCCCceEEEeee----------------cccccccCCceEEEEEEEeecCcEEEecCCceEEEEc
Confidence 899999999999999998443221000 0111111 22335556554 78999999999999999
Q ss_pred CCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 267 PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
...+. +++.+..|.+.|.+++..+++ .++.+++.|+.|..+...++.
T Consensus 232 ~~~gT---------LiqS~~~h~adVl~Lav~~~~--d~vfsaGvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 232 SIFGT---------LIQSHSCHDADVLALAVADNE--DRVFSAGVDPKIIQYSLTTNK 278 (691)
T ss_pred ccCcc---------hhhhhhhhhcceeEEEEcCCC--CeEEEccCCCceEEEEecCCc
Confidence 99876 889999999999999999998 789999999999999888764
No 129
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=6.2e-24 Score=173.99 Aligned_cols=247 Identities=12% Similarity=0.126 Sum_probs=173.1
Q ss_pred cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE-EEeecCCeEEEEEccCcceeeeeccC
Q 019117 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL-VAGGINGIIRVIDVSNEKLHKSFVGH 127 (346)
Q Consensus 50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~ 127 (346)
.++++++.++ +.+||..+++....+.. ...+..++|. |+++ .+ ++++.++.|++||..+++.+..+..+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~------~~~~~~l~~~--~dg~-~l~~~~~~~~~v~~~d~~~~~~~~~~~~~ 72 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPV------GQRPRGITLS--KDGK-LLYVCASDSDTIQVIDLATGEVIGTLPSG 72 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEEC------CCCCCceEEC--CCCC-EEEEEECCCCeEEEEECCCCcEEEeccCC
Confidence 5788888888 99999988877666652 2234445554 8888 55 67778899999999998887777655
Q ss_pred CCceEEEEEeCCCCceE-EEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCC-eEEEEEcc
Q 019117 128 GDSINEIRTQPLKPSLV-VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-TVKIWSMK 205 (346)
Q Consensus 128 ~~~v~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-~i~iwd~~ 205 (346)
.. +..++|+| +++.+ ++++.|+.|++||+++.+.+..+. +...+.+++|+| ++.+++++..++ .+.+||..
T Consensus 73 ~~-~~~~~~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~----~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~ 145 (300)
T TIGR03866 73 PD-PELFALHP-NGKILYIANEDDNLVTVIDIETRKVLAEIP----VGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTK 145 (300)
T ss_pred CC-ccEEEECC-CCCEEEEEcCCCCeEEEEECCCCeEEeEee----CCCCcceEEECC-CCCEEEEEecCCCeEEEEeCC
Confidence 44 56889999 66655 455678999999999888877775 344578899999 888888887765 46778887
Q ss_pred ccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEE-EeecCeEEEEcCCCCCCCCCCcccccc
Q 019117 206 EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS-KSVDNEIVLWEPKMKEQSPGEGTADIL 282 (346)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~ 282 (346)
+... ..... ......++.|+ ++++++ +..++.|++||+.+++. +
T Consensus 146 ~~~~-----------------------~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~---------~ 192 (300)
T TIGR03866 146 TYEI-----------------------VDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV---------I 192 (300)
T ss_pred CCeE-----------------------EEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee---------e
Confidence 6221 11111 12234566776 677754 45699999999998752 2
Q ss_pred ccccC-----C--CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117 283 QKYPV-----P--ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 283 ~~~~~-----~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~ 346 (346)
..+.. + ......++|+|+++ ..+++.+.++.+.+||+.+++..........+.+++|+|+|++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~i~~s~dg~-~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~ 262 (300)
T TIGR03866 193 KKITFEIPGVHPEAVQPVGIKLTKDGK-TAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKY 262 (300)
T ss_pred eeeeecccccccccCCccceEECCCCC-EEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCE
Confidence 21111 1 11234688999994 2344455677899999998876655545556889999999974
No 130
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=2e-24 Score=162.14 Aligned_cols=241 Identities=14% Similarity=0.143 Sum_probs=178.9
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 108 (346)
-.|..++.+++|.+ ....++|+-|+ |+.+|+.++.....-. |.+.+.++... +... .+++|+.|+
T Consensus 51 ~~~~~plL~c~F~d-----~~~~~~G~~dg~vr~~Dln~~~~~~igt------h~~~i~ci~~~--~~~~-~vIsgsWD~ 116 (323)
T KOG1036|consen 51 FKHGAPLLDCAFAD-----ESTIVTGGLDGQVRRYDLNTGNEDQIGT------HDEGIRCIEYS--YEVG-CVISGSWDK 116 (323)
T ss_pred eecCCceeeeeccC-----CceEEEeccCceEEEEEecCCcceeecc------CCCceEEEEee--ccCC-eEEEcccCc
Confidence 35899999999986 45677777777 9999998877654433 88999999887 4444 799999999
Q ss_pred eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCc
Q 019117 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY 188 (346)
Q Consensus 109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 188 (346)
+|++||.+.......+. ....|.++... ++.|+.|..|..+.+||+++.......+ .......++|+++.| ++.
T Consensus 117 ~ik~wD~R~~~~~~~~d-~~kkVy~~~v~---g~~LvVg~~~r~v~iyDLRn~~~~~q~r-eS~lkyqtR~v~~~p-n~e 190 (323)
T KOG1036|consen 117 TIKFWDPRNKVVVGTFD-QGKKVYCMDVS---GNRLVVGTSDRKVLIYDLRNLDEPFQRR-ESSLKYQTRCVALVP-NGE 190 (323)
T ss_pred cEEEEeccccccccccc-cCceEEEEecc---CCEEEEeecCceEEEEEcccccchhhhc-cccceeEEEEEEEec-CCC
Confidence 99999998766665555 34478888874 5789999999999999999765544222 113567899999999 777
Q ss_pred EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEc
Q 019117 189 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWE 266 (346)
Q Consensus 189 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd 266 (346)
-++.++-||.|.+=.+...+....+.+.+.-+........... +|.+++|+ .+.|+||+.||.|.+||
T Consensus 191 Gy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y----------PVNai~Fhp~~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 191 GYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY----------PVNAIAFHPIHGTFATGGSDGIVNIWD 260 (323)
T ss_pred ceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE----------EeceeEeccccceEEecCCCceEEEcc
Confidence 7888899999888655553333333333333322222222222 46677776 67899999999999999
Q ss_pred CCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcC
Q 019117 267 PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR 311 (346)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~ 311 (346)
+.+.+ .+..+......|.+++|+.+| ..||+++.
T Consensus 261 ~~~rK---------rl~q~~~~~~SI~slsfs~dG--~~LAia~s 294 (323)
T KOG1036|consen 261 LFNRK---------RLKQLAKYETSISSLSFSMDG--SLLAIASS 294 (323)
T ss_pred Ccchh---------hhhhccCCCCceEEEEeccCC--CeEEEEec
Confidence 99887 566666667789999999999 67888763
No 131
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.94 E-value=3.5e-25 Score=181.36 Aligned_cols=276 Identities=13% Similarity=0.141 Sum_probs=193.6
Q ss_pred Ccceeeeccccccccceee----eeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCC
Q 019117 7 GCEPLVGSLTPSKKREYRV----TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDED 81 (346)
Q Consensus 7 g~~~~~~~~~~~~~~~~~~----~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~ 81 (346)
+.++.-..+.+.....+++ +.....|...|.+++|-| ....|+++++|. +++||+...+....-. + .+
T Consensus 70 adE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap----ge~~lVsasGDsT~r~Wdvk~s~l~G~~~-~--~G 142 (720)
T KOG0321|consen 70 ADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP----GESLLVSASGDSTIRPWDVKTSRLVGGRL-N--LG 142 (720)
T ss_pred ecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC----CceeEEEccCCceeeeeeeccceeeccee-e--cc
Confidence 4444445555555555552 233478999999999999 457889998888 9999999887765521 1 24
Q ss_pred CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc---------------------------eeeeeccCCCceEE-
Q 019117 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK---------------------------LHKSFVGHGDSINE- 133 (346)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------------------------~~~~~~~~~~~v~~- 133 (346)
|...|.++||. +.+...|++|+.||.|.|||++-.. .+..-+.+...|.+
T Consensus 143 H~~SvkS~cf~--~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ss 220 (720)
T KOG0321|consen 143 HTGSVKSECFM--PTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSS 220 (720)
T ss_pred cccccchhhhc--cCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeee
Confidence 88888888888 7666699999999999999985321 01112234444444
Q ss_pred --EEEeCCCCceEEEeeC-CCCEEEEecCCCeeEEEecccC-----CC---CcceEEEEecCCCCcEEEEEecCCeEEEE
Q 019117 134 --IRTQPLKPSLVVSASK-DESVRLWNVQTGICILIFAGAG-----GH---RNEVLSVDFHPSDIYRIASCGMDNTVKIW 202 (346)
Q Consensus 134 --~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~-----~~---~~~v~~~~~~~~~~~~l~s~~~d~~i~iw 202 (346)
+.+.. +...|++++. |+.|+|||++............ .| .-.+.++.... .|.+|++...|+.|.+|
T Consensus 221 vTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sIy~y 298 (720)
T KOG0321|consen 221 VTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSIYFY 298 (720)
T ss_pred eEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcEEEE
Confidence 44445 7788998887 9999999999765443332211 12 33567777775 55556555569999999
Q ss_pred EccccceeeeeceeecCCCCCCCCccceeceEEEeecccc----eEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCcc
Q 019117 203 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY----VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGT 278 (346)
Q Consensus 203 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 278 (346)
++..... .++..+.++... -.++.+++.++++|+.|....+|.+.+.+.
T Consensus 299 nm~s~s~---------------------sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~------ 351 (720)
T KOG0321|consen 299 NMRSLSI---------------------SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA------ 351 (720)
T ss_pred eccccCc---------------------CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC------
Confidence 9998432 122222222211 123455589999999999999999998763
Q ss_pred ccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117 279 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (346)
Q Consensus 279 ~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (346)
....+.+|.-.|++++|.|..- .-++++++|..+++|++..+
T Consensus 352 --~~~~l~Ght~eVt~V~w~pS~~-t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 352 --PPALLLGHTREVTTVRWLPSAT-TPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred --ChhhhhCcceEEEEEeeccccC-CCceeeccCcceEEEeccCc
Confidence 5667788999999999999765 35677799999999999665
No 132
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=4.3e-24 Score=170.56 Aligned_cols=279 Identities=14% Similarity=0.158 Sum_probs=204.4
Q ss_pred eeecccCCCceEEEEEEeecCCCccEEEEEcCCc---------EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCC
Q 019117 26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR---------VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD 96 (346)
Q Consensus 26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~---------v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 96 (346)
.+.+.+|...|.|++.+| +.-++|+|...+ +++||..+...+..+.. ....|.+++|+....
T Consensus 97 Qr~y~GH~ddikc~~vHP----dri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~-----f~~GV~~vaFsk~~~ 167 (626)
T KOG2106|consen 97 QRHYLGHNDDIKCMAVHP----DRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGF-----FDRGVTCVAFSKING 167 (626)
T ss_pred cccccCCCCceEEEeecC----CceeeccCcccccCCCcCCCeeeecccccceeeeeecc-----ccccceeeeecccCC
Confidence 345579999999999999 556667554322 89999877776666652 566789999997767
Q ss_pred CCcEEEEe--ecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCC-
Q 019117 97 GIPFLVAG--GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGH- 173 (346)
Q Consensus 97 ~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~- 173 (346)
|. +|+.- +.+..+.+||...+......+..+..|....|+|.+.+++++.+. +.+.+|+++.+...+.....+.+
T Consensus 168 G~-~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~e 245 (626)
T KOG2106|consen 168 GS-LLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKRE 245 (626)
T ss_pred Cc-eEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeecccccc
Confidence 76 66554 345679999999988888888888899999999988888888875 88999999988666554332232
Q ss_pred CcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCE
Q 019117 174 RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDF 252 (346)
Q Consensus 174 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 252 (346)
...|.|++|.+ ++. +++|..+|.|.||+... .........|++.|.++..- ...
T Consensus 246 kk~Vl~v~F~e-ngd-viTgDS~G~i~Iw~~~~-----------------------~~~~k~~~aH~ggv~~L~~lr~Gt 300 (626)
T KOG2106|consen 246 KKFVLCVTFLE-NGD-VITGDSGGNILIWSKGT-----------------------NRISKQVHAHDGGVFSLCMLRDGT 300 (626)
T ss_pred ceEEEEEEEcC-CCC-EEeecCCceEEEEeCCC-----------------------ceEEeEeeecCCceEEEEEecCcc
Confidence 36899999997 766 88999999999999977 22333444899999999987 556
Q ss_pred EEEEeecCeEEEEcCCCCCCCCCC-----c--------cc------------------cccccccCCCcCeeEEEEeecC
Q 019117 253 ILSKSVDNEIVLWEPKMKEQSPGE-----G--------TA------------------DILQKYPVPECDIWFIKFSCDF 301 (346)
Q Consensus 253 l~~~~~d~~i~iwd~~~~~~~~~~-----~--------~~------------------~~~~~~~~~~~~v~~~~~s~~~ 301 (346)
|++|+.|..|..||-+-.+....+ + .. ..-....+|....+.++.+|+.
T Consensus 301 llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~ 380 (626)
T KOG2106|consen 301 LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK 380 (626)
T ss_pred EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh
Confidence 777999999999994433221110 0 00 0011223466788889999988
Q ss_pred CcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCC
Q 019117 302 HYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQS 344 (346)
Q Consensus 302 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg 344 (346)
..+++++.|+.+++|+ ..++...........++.|.|.|
T Consensus 381 --~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg 419 (626)
T KOG2106|consen 381 --NQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG 419 (626)
T ss_pred --hheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc
Confidence 6899999999999999 44445555555555556666654
No 133
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.3e-26 Score=200.10 Aligned_cols=253 Identities=15% Similarity=0.244 Sum_probs=205.3
Q ss_pred CCceEEEEEEeecCCCccEEEEEcCCc-EEEEEecc---CceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE---GGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (346)
Q Consensus 33 ~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 108 (346)
..+-+.++|.+..+....++|.|.+|| |.+||... +.....+..+ ..|.+.|..+.|. +...++||+|+.||
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~--~~h~G~V~gLDfN--~~q~nlLASGa~~g 139 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATK--SKHTGPVLGLDFN--PFQGNLLASGADDG 139 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhh--cccCCceeeeecc--ccCCceeeccCCCC
Confidence 456789999995433334699999999 99999875 3433333333 2488889887776 66656999999999
Q ss_pred eEEEEEccCcceeeee--ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC--cceEEEEecC
Q 019117 109 IIRVIDVSNEKLHKSF--VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR--NEVLSVDFHP 184 (346)
Q Consensus 109 ~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~ 184 (346)
.|.|||+++.+.-... ....+.|.+++|+......|++++.+|.+.|||++..+.+..+.. +. ..+..++|+|
T Consensus 140 eI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~---~~~~~~~S~l~WhP 216 (1049)
T KOG0307|consen 140 EILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSD---TPGRMHCSVLAWHP 216 (1049)
T ss_pred cEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccccc---CCCccceeeeeeCC
Confidence 9999999876544333 224678999999987778899999999999999999888888763 33 3578999999
Q ss_pred CCCcEEEEEecCC---eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEee
Q 019117 185 SDIYRIASCGMDN---TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSV 258 (346)
Q Consensus 185 ~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~ 258 (346)
++...+++++.|. .|.+||+|.. ..++..+..|...|.++.|+ .++|++++.
T Consensus 217 ~~aTql~~As~dd~~PviqlWDlR~a----------------------ssP~k~~~~H~~GilslsWc~~D~~lllSsgk 274 (1049)
T KOG0307|consen 217 DHATQLLVASGDDSAPVIQLWDLRFA----------------------SSPLKILEGHQRGILSLSWCPQDPRLLLSSGK 274 (1049)
T ss_pred CCceeeeeecCCCCCceeEeeccccc----------------------CCchhhhcccccceeeeccCCCCchhhhcccC
Confidence 7778888887764 6999999982 34677889999999999999 479999999
Q ss_pred cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 259 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 259 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
|+.|.+|+.++++ .+..+.....++..+.|+|... .++++.+-||.|.|+.+.+..
T Consensus 275 D~~ii~wN~~tgE---------vl~~~p~~~nW~fdv~w~pr~P-~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 275 DNRIICWNPNTGE---------VLGELPAQGNWCFDVQWCPRNP-SVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCeeEecCCCce---------EeeecCCCCcceeeeeecCCCc-chhhhheeccceeeeeeecCC
Confidence 9999999999987 7888888888999999999875 589999999999999998865
No 134
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.2e-24 Score=160.45 Aligned_cols=228 Identities=16% Similarity=0.247 Sum_probs=175.0
Q ss_pred EEEEcCCc-EEEEEeccCc-------eeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeee
Q 019117 52 FATVGGNR-VTVYQCLEGG-------VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS 123 (346)
Q Consensus 52 la~~~~~~-v~i~~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 123 (346)
+++|+... |.-+++.... .....+.|..+.|..++++++++ +. ++|+|+.|-+|+|||+.+...+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs----~~-~~aSGssDetI~IYDm~k~~qlg~ 78 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS----GP-YVASGSSDETIHIYDMRKRKQLGI 78 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec----ce-eEeccCCCCcEEEEeccchhhhcc
Confidence 44555554 4444443221 22333455666799999988875 66 999999999999999999999999
Q ss_pred eccCCCceEEEEEeCCCCc--eEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEE
Q 019117 124 FVGHGDSINEIRTQPLKPS--LVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI 201 (346)
Q Consensus 124 ~~~~~~~v~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i 201 (346)
+..|.+.|+++.|.+ ... .|++|++||.|.+|+...-+++..++ +|.+.|+.++.+| .+++.++.+.|+.++.
T Consensus 79 ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~W~~~~slK---~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~ 153 (362)
T KOG0294|consen 79 LLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGSWELLKSLK---AHKGQVTDLSIHP-SGKLALSVGGDQVLRT 153 (362)
T ss_pred eeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCCeEEeeeec---ccccccceeEecC-CCceEEEEcCCceeee
Confidence 999999999999998 443 89999999999999999999999999 8999999999999 9999999999999999
Q ss_pred EEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccc
Q 019117 202 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTA 279 (346)
Q Consensus 202 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 279 (346)
||+..++.... ... ...-+.+.|+ |.+++.++.+ .|-+|.+.+..
T Consensus 154 WNLV~Gr~a~v-----------------------~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~-------- 200 (362)
T KOG0294|consen 154 WNLVRGRVAFV-----------------------LNL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNAS-------- 200 (362)
T ss_pred ehhhcCcccee-----------------------ecc-CCcceeeEEcCCCCEEEEEecc-EEEEEecccHh--------
Confidence 99998543221 111 1122337777 8888888776 58999998765
Q ss_pred cccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce
Q 019117 280 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL 327 (346)
Q Consensus 280 ~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 327 (346)
....+..+ ..+.++.|-.. ..|++|++|+.|.+||..+..+..
T Consensus 201 -v~~~i~~~-~r~l~~~~l~~---~~L~vG~d~~~i~~~D~ds~~~~~ 243 (362)
T KOG0294|consen 201 -VFREIENP-KRILCATFLDG---SELLVGGDNEWISLKDTDSDTPLT 243 (362)
T ss_pred -Hhhhhhcc-ccceeeeecCC---ceEEEecCCceEEEeccCCCccce
Confidence 33333322 35666666654 489999999999999999866544
No 135
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=9.7e-25 Score=171.43 Aligned_cols=195 Identities=16% Similarity=0.233 Sum_probs=162.4
Q ss_pred CCcEEEEeecCCeEEEEEccCcce---------------------eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEE
Q 019117 97 GIPFLVAGGINGIIRVIDVSNEKL---------------------HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL 155 (346)
Q Consensus 97 ~~~~l~~~~~dg~i~iwd~~~~~~---------------------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i 155 (346)
|+ |+|.|..|..|.|||+.-... -..-.+|++.|..+.|+..-.+.|++||.|.+|++
T Consensus 192 gN-yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 192 GN-YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred cc-eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 44 999999999999999853110 01123699999999999877889999999999999
Q ss_pred EecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEE
Q 019117 156 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 235 (346)
Q Consensus 156 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (346)
||+.++++...+. .|.+.|.++.|+|.....|++|+.|++|.+.|.|.... ...
T Consensus 271 WD~~~g~p~~s~~---~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~-----------------------s~~ 324 (463)
T KOG0270|consen 271 WDVDTGKPKSSIT---HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN-----------------------SGK 324 (463)
T ss_pred EEcCCCCcceehh---hcCCceeEEEecCCCceEEEeccccceEEeeeccCccc-----------------------cCc
Confidence 9999999999998 69999999999998899999999999999999996211 111
Q ss_pred EeecccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC
Q 019117 236 ASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE 312 (346)
Q Consensus 236 ~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d 312 (346)
.-.-.+.|-.+.|+ ...++++..||+|+-+|++... +++.++..|.+.|.++++++.-. .+|++++.|
T Consensus 325 ~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~--------~~vwt~~AHd~~ISgl~~n~~~p-~~l~t~s~d 395 (463)
T KOG0270|consen 325 EWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG--------KPVWTLKAHDDEISGLSVNIQTP-GLLSTASTD 395 (463)
T ss_pred eEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCC--------CceeEEEeccCCcceEEecCCCC-cceeecccc
Confidence 11234567778887 6789999999999999999864 38999999999999999999876 589999999
Q ss_pred CcEEEEEcCCCCcce
Q 019117 313 GKIFVWELQSSPPVL 327 (346)
Q Consensus 313 g~i~iwd~~~~~~~~ 327 (346)
+.|++|++....+..
T Consensus 396 ~~Vklw~~~~~~~~~ 410 (463)
T KOG0270|consen 396 KVVKLWKFDVDSPKS 410 (463)
T ss_pred ceEEEEeecCCCCcc
Confidence 999999998876543
No 136
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=8.9e-24 Score=158.29 Aligned_cols=233 Identities=12% Similarity=0.139 Sum_probs=180.8
Q ss_pred ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec
Q 019117 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI 106 (346)
Q Consensus 28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 106 (346)
....|.++|.+++|+. +|..+++|+.|+ +++||+.+++....-. |..+|..+.|...+.-. .|++|+.
T Consensus 67 a~~~~~~PvL~v~Wsd----dgskVf~g~~Dk~~k~wDL~S~Q~~~v~~------Hd~pvkt~~wv~~~~~~-cl~TGSW 135 (347)
T KOG0647|consen 67 AQQSHDGPVLDVCWSD----DGSKVFSGGCDKQAKLWDLASGQVSQVAA------HDAPVKTCHWVPGMNYQ-CLVTGSW 135 (347)
T ss_pred hhhccCCCeEEEEEcc----CCceEEeeccCCceEEEEccCCCeeeeee------cccceeEEEEecCCCcc-eeEeccc
Confidence 3467999999999997 788899988888 9999999986544332 88999999998555544 9999999
Q ss_pred CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCC
Q 019117 107 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD 186 (346)
Q Consensus 107 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 186 (346)
|.+|+.||++...++.++. -.+.+.++..- ...++.+..++.|.+|+++.+......... ...-.++|++..+ +
T Consensus 136 DKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~~S-pLk~Q~R~va~f~-d 209 (347)
T KOG0647|consen 136 DKTLKFWDTRSSNPVATLQ-LPERVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRIES-PLKWQTRCVACFQ-D 209 (347)
T ss_pred ccceeecccCCCCeeeeee-ccceeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhhcC-cccceeeEEEEEe-c
Confidence 9999999999998888877 45677777764 368888888999999999866443322110 2345789999997 7
Q ss_pred CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc---------cceEEEEec--CCEEEE
Q 019117 187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS---------NYVDCNRWL--GDFILS 255 (346)
Q Consensus 187 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~~--~~~l~~ 255 (346)
....+.|+-+|.+.+..+..... ..-+.+..|. -.|.+|+|+ -..|++
T Consensus 210 ~~~~alGsiEGrv~iq~id~~~~---------------------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvT 268 (347)
T KOG0647|consen 210 KDGFALGSIEGRVAIQYIDDPNP---------------------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVT 268 (347)
T ss_pred CCceEeeeecceEEEEecCCCCc---------------------cCceeEEEeccCCCCCCceEEecceEeecccceEEE
Confidence 77779999999999998887321 1223344443 246778888 668999
Q ss_pred EeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEE
Q 019117 256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG 309 (346)
Q Consensus 256 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~ 309 (346)
++.||+..+||-+... .+.....+..+|++.+|+.+| .++|.+
T Consensus 269 aGsDGtf~FWDkdar~---------kLk~s~~~~qpItcc~fn~~G--~ifaYA 311 (347)
T KOG0647|consen 269 AGSDGTFSFWDKDART---------KLKTSETHPQPITCCSFNRNG--SIFAYA 311 (347)
T ss_pred ecCCceEEEecchhhh---------hhhccCcCCCccceeEecCCC--CEEEEE
Confidence 9999999999988765 677778889999999999999 455443
No 137
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=5.3e-24 Score=160.55 Aligned_cols=268 Identities=16% Similarity=0.142 Sum_probs=191.5
Q ss_pred eEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEE
Q 019117 36 LYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVID 114 (346)
Q Consensus 36 v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd 114 (346)
-.|+.|++ .|.+||+|..+| |.|||+.+-..-+.+.. |..+|.+++|+ ++|+ .|++++.|..|.+||
T Consensus 26 a~~~~Fs~----~G~~lAvGc~nG~vvI~D~~T~~iar~lsa-----H~~pi~sl~WS--~dgr-~LltsS~D~si~lwD 93 (405)
T KOG1273|consen 26 AECCQFSR----WGDYLAVGCANGRVVIYDFDTFRIARMLSA-----HVRPITSLCWS--RDGR-KLLTSSRDWSIKLWD 93 (405)
T ss_pred cceEEecc----CcceeeeeccCCcEEEEEccccchhhhhhc-----cccceeEEEec--CCCC-EeeeecCCceeEEEe
Confidence 67999999 899999999999 99999998886666654 78889999998 9999 999999999999999
Q ss_pred ccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCC-CCcceEEEEecCCCCcEEEEE
Q 019117 115 VSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGG-HRNEVLSVDFHPSDIYRIASC 193 (346)
Q Consensus 115 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~ 193 (346)
+..|.+++.+. ...+|+.+.|+|.+.+.+++.-.+..-.+-++..++....-....+ ......+..|++ .++++++|
T Consensus 94 l~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr-~g~yIitG 171 (405)
T KOG1273|consen 94 LLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR-RGKYIITG 171 (405)
T ss_pred ccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC-CCCEEEEe
Confidence 99999988887 6789999999997666666665555566666655332221111111 112223446787 89999999
Q ss_pred ecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc-cceEEEEec--CCEEEEEeecCeEEEEcCCCC
Q 019117 194 GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS-NYVDCNRWL--GDFILSKSVDNEIVLWEPKMK 270 (346)
Q Consensus 194 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~ 270 (346)
...|.+.++|..+. ..+..+.-.. ..|..+.++ |+.|+.-+.|..||.|++..-
T Consensus 172 tsKGkllv~~a~t~-----------------------e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di 228 (405)
T KOG1273|consen 172 TSKGKLLVYDAETL-----------------------ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDI 228 (405)
T ss_pred cCcceEEEEecchh-----------------------eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhh
Confidence 99999999999983 2333333333 567777777 999999999999999998743
Q ss_pred CCCCCCccccccccccC--CCcCeeEEEEeecCCcceEEEEc-CCCcEEEEEcCCCCcceeeeeee--eEEEEEecC
Q 019117 271 EQSPGEGTADILQKYPV--PECDIWFIKFSCDFHYNAAAIGN-REGKIFVWELQSSPPVLIARLIC--FSLHVKYNP 342 (346)
Q Consensus 271 ~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~sp 342 (346)
...-.....++.+++.. ....-.+++||.+| .|+++++ ....++||.-..|.++.+..-.. ....+.|.|
T Consensus 229 ~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg--eYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp 303 (405)
T KOG1273|consen 229 DDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG--EYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP 303 (405)
T ss_pred cccCccCCcChhHHHHHHHhhhhhhheeecCCc--cEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccc
Confidence 21111111122222221 23355678999999 5666555 56689999999998776654322 134455555
No 138
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=5.7e-26 Score=173.99 Aligned_cols=224 Identities=14% Similarity=0.250 Sum_probs=176.8
Q ss_pred CCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC
Q 019117 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160 (346)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 160 (346)
+|.+.|.+++=. |..-..+++|+.||.|+|||+.+.++..+++.|.+.|..|++.. ..++++++|.+|+.|-+.-
T Consensus 64 gHrdGV~~lakh--p~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~ 138 (433)
T KOG0268|consen 64 GHRDGVSCLAKH--PNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDG 138 (433)
T ss_pred ccccccchhhcC--cchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceeeeeccC
Confidence 477888777655 65533799999999999999999999999999999999999975 6788889999988887431
Q ss_pred ---------------------------C-----------eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEE
Q 019117 161 ---------------------------G-----------ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW 202 (346)
Q Consensus 161 ---------------------------~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iw 202 (346)
| .++..+. --...|.++.|+|-....|++|+.|+.|.+|
T Consensus 139 ~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~sms---wG~Dti~svkfNpvETsILas~~sDrsIvLy 215 (433)
T KOG0268|consen 139 PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMS---WGADSISSVKFNPVETSILASCASDRSIVLY 215 (433)
T ss_pred CcceeeeccccccccccccccccccccCceeeecccccCCccceee---cCCCceeEEecCCCcchheeeeccCCceEEE
Confidence 1 1122222 1234577888999777889999999999999
Q ss_pred EccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCcccc
Q 019117 203 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTAD 280 (346)
Q Consensus 203 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 280 (346)
|++.. .|+..... ...-..|+|+ +-.++++++|..++.||++..+.
T Consensus 216 D~R~~-----------------------~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~-------- 263 (433)
T KOG0268|consen 216 DLRQA-----------------------SPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSR-------- 263 (433)
T ss_pred ecccC-----------------------Cccceeee-eccccceecCccccceeeccccccceehhhhhhcc--------
Confidence 99983 23332221 1223467888 55789999999999999998763
Q ss_pred ccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee--eeEEEEEecCCCCC
Q 019117 281 ILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI--CFSLHVKYNPQSVY 346 (346)
Q Consensus 281 ~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~spdg~~ 346 (346)
++..+.+|...|.+++|||.| .-+++||.|.+|+||.+..+....++... .++.++.||-|.+|
T Consensus 264 p~~v~~dhvsAV~dVdfsptG--~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsky 329 (433)
T KOG0268|consen 264 PLNVHKDHVSAVMDVDFSPTG--QEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKY 329 (433)
T ss_pred cchhhcccceeEEEeccCCCc--chhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccE
Confidence 788899999999999999999 57999999999999999998765555433 36899999999886
No 139
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=1.8e-24 Score=170.62 Aligned_cols=287 Identities=15% Similarity=0.178 Sum_probs=204.4
Q ss_pred ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCcee-eeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI-AALQSYVDEDKEESFYTVSWACNVDGIP 99 (346)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (346)
.+......+-+.++|++++|+|.. ..+++|+|...| |-+||+.+.+.. ..+. ....|..+|.++.|+ |.+..
T Consensus 175 ~~~~~~v~kv~~~Rit~l~fHPt~--~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~--~f~~hs~~Vs~l~F~--P~n~s 248 (498)
T KOG4328|consen 175 DYRILNVAKVTDRRITSLAFHPTE--NRKLVAVGDKGGQVGLWNFGTQEKDKDGVY--LFTPHSGPVSGLKFS--PANTS 248 (498)
T ss_pred cceecceeEecccceEEEEecccC--cceEEEEccCCCcEEEEecCCCCCccCceE--EeccCCccccceEec--CCChh
Confidence 344555667789999999999954 347889998888 999999532221 1122 223478889989888 65555
Q ss_pred EEEEeecCCeEEEEEccCcce--eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee-EEEecccCCCCcc
Q 019117 100 FLVAGGINGIIRVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC-ILIFAGAGGHRNE 176 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~ 176 (346)
.+++.+.||+|++-|+++... +.........+.++.|+. +...++.+..=|...+||++++.. ...+. -|...
T Consensus 249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~---lh~kK 324 (498)
T KOG4328|consen 249 QIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLR---LHKKK 324 (498)
T ss_pred heeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhh---hhhcc
Confidence 799999999999999987753 333333556778889988 666677777767999999998765 44444 58889
Q ss_pred eEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEE
Q 019117 177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL 254 (346)
Q Consensus 177 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~ 254 (346)
|++++++|....+++|++.|++.+|||++..... ..|......|...|.+..|+ +..|+
T Consensus 325 I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K-------------------~sp~lst~~HrrsV~sAyFSPs~gtl~ 385 (498)
T KOG4328|consen 325 ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGK-------------------ASPFLSTLPHRRSVNSAYFSPSGGTLL 385 (498)
T ss_pred cceeecCCCCchheeecccCcceeeeehhhhcCC-------------------CCcceecccccceeeeeEEcCCCCceE
Confidence 9999999988899999999999999999984321 11355667799999999999 45599
Q ss_pred EEeecCeEEEEcCCCCCCCCCCccccccccccC-----CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee
Q 019117 255 SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA 329 (346)
Q Consensus 255 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 329 (346)
+.+.|..|+|||..--.. ...++..+.. .--......|.|+. .++++|-.-..|-|+|-..++.+..+
T Consensus 386 TT~~D~~IRv~dss~~sa-----~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~--~li~vg~~~r~IDv~~~~~~q~v~el 458 (498)
T KOG4328|consen 386 TTCQDNEIRVFDSSCISA-----KDEPLGTIPHNNRTGRWLTPFKAAWDPDY--NLIVVGRYPRPIDVFDGNGGQMVCEL 458 (498)
T ss_pred eeccCCceEEeecccccc-----cCCccceeeccCcccccccchhheeCCCc--cEEEEeccCcceeEEcCCCCEEeeec
Confidence 999999999999841100 0001111111 11123446799977 79999999999999998888644433
Q ss_pred eeee--eE-EEEEecCCC
Q 019117 330 RLIC--FS-LHVKYNPQS 344 (346)
Q Consensus 330 ~~~~--~~-~~~~~spdg 344 (346)
..+. .+ .-..|+|-+
T Consensus 459 ~~P~~~tI~~vn~~HP~~ 476 (498)
T KOG4328|consen 459 HDPESSTIPSVNEFHPMR 476 (498)
T ss_pred cCccccccccceeecccc
Confidence 2221 12 225677643
No 140
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=7.6e-24 Score=167.29 Aligned_cols=286 Identities=15% Similarity=0.180 Sum_probs=209.1
Q ss_pred cccccceeeeeec-ccC--CCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEE
Q 019117 17 PSKKREYRVTNKL-QEG--KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWA 92 (346)
Q Consensus 17 ~~~~~~~~~~~~~-~~h--~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 92 (346)
|...-.++.++.. .+| .+.|++|.|+| ...+|.+++.|+ ++||.+. |+.-..++.... ..-++.+.+|+
T Consensus 194 p~~tl~~krlkDaNa~~ps~~~I~sv~FHp----~~plllvaG~d~~lrifqvD-Gk~N~~lqS~~l--~~fPi~~a~f~ 266 (514)
T KOG2055|consen 194 PPGTLNIKRLKDANAAHPSHGGITSVQFHP----TAPLLLVAGLDGTLRIFQVD-GKVNPKLQSIHL--EKFPIQKAEFA 266 (514)
T ss_pred CCceeeeEeecccccCCcCcCCceEEEecC----CCceEEEecCCCcEEEEEec-CccChhheeeee--ccCccceeeec
Confidence 3344445544444 233 47899999999 678999999998 9999865 333223332211 34556666666
Q ss_pred EcCCCCcEEEEeecCCeEEEEEccCcceee--eeccCC-CceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecc
Q 019117 93 CNVDGIPFLVAGGINGIIRVIDVSNEKLHK--SFVGHG-DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG 169 (346)
Q Consensus 93 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 169 (346)
|+|...+++++....++.||+.+.+..+ ...++. ..+.....++ ++++|+..+..|.|.+....+++.+..++
T Consensus 267 --p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~K- 342 (514)
T KOG2055|consen 267 --PNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFK- 342 (514)
T ss_pred --CCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhheee-
Confidence 8898789999999999999998877443 333333 4677888899 88899999999999999999999999997
Q ss_pred cCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce--EEEE
Q 019117 170 AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV--DCNR 247 (346)
Q Consensus 170 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~ 247 (346)
-.+.|..++|+. ++..|+.++.+|.|.+||++.. ..+..+. ..+.| ++++
T Consensus 343 ---ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~-----------------------~~~~rf~-D~G~v~gts~~ 394 (514)
T KOG2055|consen 343 ---IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQN-----------------------SCLHRFV-DDGSVHGTSLC 394 (514)
T ss_pred ---eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCc-----------------------ceEEEEe-ecCccceeeee
Confidence 789999999996 8888888889999999999983 2222222 22223 3334
Q ss_pred --ecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc--CCCcEEEEEcCCC
Q 019117 248 --WLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN--REGKIFVWELQSS 323 (346)
Q Consensus 248 --~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~--~dg~i~iwd~~~~ 323 (346)
.++.+||+|+..|.|.|||.++.... ..+.++..+..-...|+++.|++|. .+||.+| .+..+++-.+.+.
T Consensus 395 ~S~ng~ylA~GS~~GiVNIYd~~s~~~s---~~PkPik~~dNLtt~Itsl~Fn~d~--qiLAiaS~~~knalrLVHvPS~ 469 (514)
T KOG2055|consen 395 ISLNGSYLATGSDSGIVNIYDGNSCFAS---TNPKPIKTVDNLTTAITSLQFNHDA--QILAIASRVKKNALRLVHVPSC 469 (514)
T ss_pred ecCCCceEEeccCcceEEEeccchhhcc---CCCCchhhhhhhheeeeeeeeCcch--hhhhhhhhccccceEEEeccce
Confidence 33899999999999999997764321 1233566666667789999999999 5676666 5778999998886
Q ss_pred Ccceee----eeeeeEEEEEecCCCCC
Q 019117 324 PPVLIA----RLICFSLHVKYNPQSVY 346 (346)
Q Consensus 324 ~~~~~~----~~~~~~~~~~~spdg~~ 346 (346)
....-+ .--++++|++|||.|.|
T Consensus 470 TVFsNfP~~n~~vg~vtc~aFSP~sG~ 496 (514)
T KOG2055|consen 470 TVFSNFPTSNTKVGHVTCMAFSPNSGY 496 (514)
T ss_pred eeeccCCCCCCcccceEEEEecCCCce
Confidence 533322 22356899999998865
No 141
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=2e-24 Score=161.44 Aligned_cols=260 Identities=17% Similarity=0.308 Sum_probs=192.2
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 108 (346)
.+|+-.|..+.|-|.| ..+|.+++-|. +++||..+.+....+. -++.|+..++++-.-...++|+|..+-
T Consensus 98 ~~Hky~iss~~WyP~D---tGmFtssSFDhtlKVWDtnTlQ~a~~F~------me~~VYshamSp~a~sHcLiA~gtr~~ 168 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPID---TGMFTSSSFDHTLKVWDTNTLQEAVDFK------MEGKVYSHAMSPMAMSHCLIAAGTRDV 168 (397)
T ss_pred ccceeeeeeeEEeeec---CceeecccccceEEEeecccceeeEEee------cCceeehhhcChhhhcceEEEEecCCC
Confidence 5688899999999954 46888888888 9999988877666555 567788888874433333888899999
Q ss_pred eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC-eeEEEe-----------cccCCCCcc
Q 019117 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-ICILIF-----------AGAGGHRNE 176 (346)
Q Consensus 109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~-----------~~~~~~~~~ 176 (346)
.|++.|+.+|....++.+|.+.|.++.|+|...-.|++|+.||.|++||++.. .+...+ +....|.+.
T Consensus 169 ~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gk 248 (397)
T KOG4283|consen 169 QVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGK 248 (397)
T ss_pred cEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccce
Confidence 99999999999999999999999999999977778999999999999999843 222222 222368899
Q ss_pred eEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEE
Q 019117 177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSK 256 (346)
Q Consensus 177 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~ 256 (346)
|.+++|.. ++.++++++.|..+++|+..++...+....... ......+..| +.+. +...++--
T Consensus 249 vngla~tS-d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~-----------~n~~~~~~~~---~~~~--~s~vfv~~ 311 (397)
T KOG4283|consen 249 VNGLAWTS-DARYLASCGTDDRIRVWNMESGRNTLREFGPII-----------HNQTTSFAVH---IQSM--DSDVFVLF 311 (397)
T ss_pred eeeeeecc-cchhhhhccCccceEEeecccCccccccccccc-----------ccccccceEE---Eeec--ccceEEEE
Confidence 99999997 999999999999999999998654322111000 0000011111 1111 12333333
Q ss_pred eecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcc
Q 019117 257 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV 326 (346)
Q Consensus 257 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 326 (346)
-.++.+.++++-.+. .+..+..|-..|.+..+-|+- ....+|..|+.|..|-..-..+.
T Consensus 312 p~~~~lall~~~sgs---------~ir~l~~h~k~i~c~~~~~~f--q~~~tg~~d~ni~~w~p~l~~pt 370 (397)
T KOG4283|consen 312 PNDGSLALLNLLEGS---------FVRRLSTHLKRINCAAYRPDF--EQCFTGDMNGNIYMWSPALKSPT 370 (397)
T ss_pred ecCCeEEEEEccCce---------EEEeeecccceeeEEeecCch--hhhhccccCCccccccccccCCc
Confidence 445778888877765 567777777788999999988 57889999999999987544443
No 142
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=1.5e-23 Score=173.46 Aligned_cols=325 Identities=16% Similarity=0.184 Sum_probs=228.3
Q ss_pred ccCcceeeeccccccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceee-----------
Q 019117 5 AIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIA----------- 72 (346)
Q Consensus 5 a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~----------- 72 (346)
|.|......-+......+|+....+.||.+.|.+++|..... +.-+||+++.|. |+||.+..+....
T Consensus 163 a~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~-~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~ 241 (764)
T KOG1063|consen 163 ACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG-DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTL 241 (764)
T ss_pred EecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC-CcEEEEecCCceEEEEEEEEecCCccccccccccccc
Confidence 445555555555555678999999999999999999998442 457899999999 9999986443111
Q ss_pred ----------eEee-----eecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcce-------eeeeccCCCc
Q 019117 73 ----------ALQS-----YVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL-------HKSFVGHGDS 130 (346)
Q Consensus 73 ----------~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~ 130 (346)
.++- -...+|.+=|+++.|. |++. .|++++.|.++.+|...+..- +..+.+....
T Consensus 242 ~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~--p~~~-~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~G 318 (764)
T KOG1063|consen 242 SNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWH--PEGL-DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGG 318 (764)
T ss_pred cCCceeeeeeeEEEEEehhhhhcCcccceEEEEEc--cchh-hheecccCcceEEEecCCccceEEEEEEeecccccccc
Confidence 1110 0012578889889888 8887 899999999999998766521 1222334556
Q ss_pred eEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccc----
Q 019117 131 INEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE---- 206 (346)
Q Consensus 131 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---- 206 (346)
.....|+| +++.+++-+..|..++|...+...-.......+|...|+.++|+| .+.+|++.+.|.+-|+|-.-.
T Consensus 319 F~g~lw~~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~ 396 (764)
T KOG1063|consen 319 FWGGLWSP-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQE 396 (764)
T ss_pred eeeEEEcC-CCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccc
Confidence 88999999 889999999999999998443333223333348999999999999 899999999998888764330
Q ss_pred ------ccee---------eeeceeecC--------------------------------------------C--CCCCC
Q 019117 207 ------FWTY---------VEKSFTWTD--------------------------------------------L--PSKFP 225 (346)
Q Consensus 207 ------~~~~---------~~~~~~~~~--------------------------------------------~--~~~~~ 225 (346)
++.+ +.....+.. + ...++
T Consensus 397 wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~ 476 (764)
T KOG1063|consen 397 WHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFP 476 (764)
T ss_pred eeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcc
Confidence 0000 000000000 0 00000
Q ss_pred --C---cc----c-------------------------eeceEEEeecccceEEEEec--CCEEEEEeec-----CeEEE
Q 019117 226 --T---KY----V-------------------------QFPVFIASVHSNYVDCNRWL--GDFILSKSVD-----NEIVL 264 (346)
Q Consensus 226 --~---~~----~-------------------------~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d-----~~i~i 264 (346)
. .. . -..+.++.+|...|.+++.+ ++++++++.. ..|++
T Consensus 477 ~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~l 556 (764)
T KOG1063|consen 477 GETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRL 556 (764)
T ss_pred cccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEE
Confidence 0 00 0 00134566788899999999 8999999764 45999
Q ss_pred EcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce-----eeeeeeeEEEEE
Q 019117 265 WEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL-----IARLICFSLHVK 339 (346)
Q Consensus 265 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~ 339 (346)
|+..+.. ..+.+.+|.-.|+.++||||+ ++|++.+.|..+.+|......... ...+..-++++.
T Consensus 557 w~t~~W~---------~~~~L~~HsLTVT~l~FSpdg--~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcs 625 (764)
T KOG1063|consen 557 WNTANWL---------QVQELEGHSLTVTRLAFSPDG--RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCS 625 (764)
T ss_pred Eeccchh---------hhheecccceEEEEEEECCCC--cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcc
Confidence 9998876 567889999999999999999 799999999999999986643211 222334478999
Q ss_pred ecCCCCC
Q 019117 340 YNPQSVY 346 (346)
Q Consensus 340 ~spdg~~ 346 (346)
|+||+.|
T Consensus 626 W~pde~~ 632 (764)
T KOG1063|consen 626 WSPDEKY 632 (764)
T ss_pred cCcccce
Confidence 9999875
No 143
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.9e-24 Score=175.93 Aligned_cols=256 Identities=12% Similarity=0.089 Sum_probs=185.3
Q ss_pred ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (346)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (346)
+-.+...++||++.|.+|...| .|.+||+|+.|| |+||.+.++.++..++ ..+.|.+++|++.++-. .
T Consensus 389 Pt~~~lvyrGHtg~Vr~iSvdp----~G~wlasGsdDGtvriWEi~TgRcvr~~~------~d~~I~~vaw~P~~~~~-v 457 (733)
T KOG0650|consen 389 PTRCALVYRGHTGLVRSISVDP----SGEWLASGSDDGTVRIWEIATGRCVRTVQ------FDSEIRSVAWNPLSDLC-V 457 (733)
T ss_pred cceeeeeEeccCCeEEEEEecC----CcceeeecCCCCcEEEEEeecceEEEEEe------ecceeEEEEecCCCCce-e
Confidence 3345556699999999999998 799999999999 9999999999999887 56789999999655554 5
Q ss_pred EEEeecCCeEEEEEccCc-------------------------------------ceeeeeccCCCceEEEEEeCCCCce
Q 019117 101 LVAGGINGIIRVIDVSNE-------------------------------------KLHKSFVGHGDSINEIRTQPLKPSL 143 (346)
Q Consensus 101 l~~~~~dg~i~iwd~~~~-------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~ 143 (346)
||++-... +.|.+..-| .-++..-.|...|..+.|+. .+.+
T Consensus 458 LAvA~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDY 535 (733)
T KOG0650|consen 458 LAVAVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDY 535 (733)
T ss_pred EEEEecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCce
Confidence 55554333 444432111 00112223556666666666 5666
Q ss_pred EEEeeCC---CCEEEE-----------------------------------------ecCCCeeEEEecccCCCCcceEE
Q 019117 144 VVSASKD---ESVRLW-----------------------------------------NVQTGICILIFAGAGGHRNEVLS 179 (346)
Q Consensus 144 l~s~~~d---~~i~iw-----------------------------------------d~~~~~~~~~~~~~~~~~~~v~~ 179 (346)
|++..-+ ..|.|. |+...+.++.+. .....|..
T Consensus 536 latV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~---tg~kwiS~ 612 (733)
T KOG0650|consen 536 LATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLL---TGSKWISS 612 (733)
T ss_pred EEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHh---cCCeeeee
Confidence 6654332 234444 444433333333 34567888
Q ss_pred EEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecC--CEEEEEe
Q 019117 180 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG--DFILSKS 257 (346)
Q Consensus 180 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~ 257 (346)
++.+| +|..|+.++.|+.+..||+.-. ..+...+..|...+++++|++ .++++|+
T Consensus 613 msihp-~GDnli~gs~d~k~~WfDldls----------------------skPyk~lr~H~~avr~Va~H~ryPLfas~s 669 (733)
T KOG0650|consen 613 MSIHP-NGDNLILGSYDKKMCWFDLDLS----------------------SKPYKTLRLHEKAVRSVAFHKRYPLFASGS 669 (733)
T ss_pred eeecC-CCCeEEEecCCCeeEEEEcccC----------------------cchhHHhhhhhhhhhhhhhccccceeeeec
Confidence 99998 8888999999999999999872 346778889999999999995 4799999
Q ss_pred ecCeEEEEcCCCCCCCCCCccccccccccCCCcC----eeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117 258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD----IWFIKFSCDFHYNAAAIGNREGKIFVW 318 (346)
Q Consensus 258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~~~l~~~~~dg~i~iw 318 (346)
.||++.||.-.-..........-++..+.+|... |..+.|+|.. .+|.+++.||.|++|
T Consensus 670 dDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~q--pWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 670 DDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQ--PWLFSAGADGTIRLF 732 (733)
T ss_pred CCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCC--ceEEecCCCceEEee
Confidence 9999999975544332222334467777887655 8889999988 799999999999998
No 144
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.93 E-value=2.6e-24 Score=160.31 Aligned_cols=262 Identities=18% Similarity=0.220 Sum_probs=198.8
Q ss_pred eecccCCCceEEEEEEeecCCCccEEEEEcCC--------cEEEEEeccCcee------eeEeeeecCCCccceEEEEEE
Q 019117 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGN--------RVTVYQCLEGGVI------AALQSYVDEDKEESFYTVSWA 92 (346)
Q Consensus 27 ~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~--------~v~i~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~ 92 (346)
+.|..|.+.|+.++-+|. +..+|+++..+ +..||.+.+.... ..+..+. ..+-+.+.|+.|.
T Consensus 57 kvf~h~agEvw~las~P~---d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ld-teavg~i~cvew~ 132 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPF---DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLD-TEAVGKINCVEWE 132 (370)
T ss_pred hhhhcCCcceehhhcCCC---CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCC-HHHhCceeeEEEc
Confidence 445678899999999994 45788887653 2789987643322 1222221 1234588889888
Q ss_pred EcCCCCcEEEEeecCCeEEEEEccCcce-eeeec-----cCCCceEEEEEeC-CCCceEEEeeCCCCEEEEecCCCeeEE
Q 019117 93 CNVDGIPFLVAGGINGIIRVIDVSNEKL-HKSFV-----GHGDSINEIRTQP-LKPSLVVSASKDESVRLWNVQTGICIL 165 (346)
Q Consensus 93 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~-----~~~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~ 165 (346)
|++. .+++-. |..|.+|++..+.. +..+. ++....++-+|+| .+++.+++.+ |+++..||+++.++..
T Consensus 133 --Pns~-klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~ 207 (370)
T KOG1007|consen 133 --PNSD-KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNN 207 (370)
T ss_pred --CCCC-eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhc
Confidence 7777 666665 88999999987765 33332 2556788899999 4566666654 7999999999988887
Q ss_pred EecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEE
Q 019117 166 IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC 245 (346)
Q Consensus 166 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 245 (346)
.+.. +|...|+.+.|+|+...+|++|+.||.|++||.|.. ..++..+..|...|.+
T Consensus 208 sI~d--AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t----------------------k~pv~el~~HsHWvW~ 263 (370)
T KOG1007|consen 208 SIED--AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT----------------------KFPVQELPGHSHWVWA 263 (370)
T ss_pred chhh--hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC----------------------CccccccCCCceEEEE
Confidence 7765 789999999999977788999999999999999983 4688899999999999
Q ss_pred EEec---CCEEEEEeecCeEEEEcCCCCCCC--------------------CCCccccccccccCCCcCeeEEEEeecCC
Q 019117 246 NRWL---GDFILSKSVDNEIVLWEPKMKEQS--------------------PGEGTADILQKYPVPECDIWFIKFSCDFH 302 (346)
Q Consensus 246 ~~~~---~~~l~~~~~d~~i~iwd~~~~~~~--------------------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 302 (346)
+.|+ .+++++++.|..|.+|...+-... ........+.++..|+..|.+++||.-..
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP 343 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP 343 (370)
T ss_pred EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence 9998 779999999999999976543210 00012234567888999999999998764
Q ss_pred cceEEEEcCCCcEEEEEcCC
Q 019117 303 YNAAAIGNREGKIFVWELQS 322 (346)
Q Consensus 303 ~~~l~~~~~dg~i~iwd~~~ 322 (346)
=++|+-+.||.+.|=.+..
T Consensus 344 -WiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 344 -WIFASLSYDGRVIISSVPR 362 (370)
T ss_pred -eeEEEeccCceEEeecCCh
Confidence 3788999999998877654
No 145
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.93 E-value=1.1e-23 Score=159.42 Aligned_cols=270 Identities=16% Similarity=0.239 Sum_probs=198.7
Q ss_pred eEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc--------eeeeEeeeecCCCccceEEEEEEE-----cCCCCcEE
Q 019117 36 LYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG--------VIAALQSYVDEDKEESFYTVSWAC-----NVDGIPFL 101 (346)
Q Consensus 36 v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~l 101 (346)
...+.|+| ||..+++-+.|. +.+|++-... .......-.....++.|+..+|-. .|+.. ++
T Consensus 52 ~kgckWSP----DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~-l~ 126 (406)
T KOG2919|consen 52 LKGCKWSP----DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN-LF 126 (406)
T ss_pred hccceeCC----CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccc-ee
Confidence 44678999 788888888777 9999874211 101111111112567788888752 25555 99
Q ss_pred EEeecCCeEEEEEccCcceeeeecc--CCC---ceEEEEEeCCCCceEEEeeCCCCEEEEec-CCCeeEEEecc----cC
Q 019117 102 VAGGINGIIRVIDVSNEKLHKSFVG--HGD---SINEIRTQPLKPSLVVSASKDESVRLWNV-QTGICILIFAG----AG 171 (346)
Q Consensus 102 ~~~~~dg~i~iwd~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~~----~~ 171 (346)
++.+.+.-|++||.-+|+....+.+ |.+ ...+++|+| ++..|++|. ..+|+++|+ +.|.....+.. ..
T Consensus 127 a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred eeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccc
Confidence 9999999999999999998877764 322 456999999 888888765 589999999 54433222111 12
Q ss_pred CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--
Q 019117 172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-- 249 (346)
Q Consensus 172 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 249 (346)
+..+-+.+++|+|.+...++.++....+-||.-.. +.++..+.+|.+.|+.+.|.
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-----------------------~~pl~llggh~gGvThL~~~ed 261 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-----------------------RRPLQLLGGHGGGVTHLQWCED 261 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEecCC-----------------------CCceeeecccCCCeeeEEeccC
Confidence 34678999999998888999999888888877666 56788899999999999999
Q ss_pred CCEEEEEee-cCeEEEEcCCCCCCCCCCccccccccccCCCc-CeeEEEEeecCCcceEEEEcCCCcEEEEEcCC-CCcc
Q 019117 250 GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYPVPEC-DIWFIKFSCDFHYNAAAIGNREGKIFVWELQS-SPPV 326 (346)
Q Consensus 250 ~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~-~~~~ 326 (346)
|+.|.+|.. |..|..||++..+. ++..+..|.+ .-..|-|.-+..+++|++|+.||.|++||+++ +..+
T Consensus 262 Gn~lfsGaRk~dkIl~WDiR~~~~--------pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~ 333 (406)
T KOG2919|consen 262 GNKLFSGARKDDKILCWDIRYSRD--------PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEV 333 (406)
T ss_pred cCeecccccCCCeEEEEeehhccc--------hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcc
Confidence 889988876 78899999998663 6667766665 45566676655558999999999999999998 6644
Q ss_pred eee-eeeeeEEEEEecCC
Q 019117 327 LIA-RLICFSLHVKYNPQ 343 (346)
Q Consensus 327 ~~~-~~~~~~~~~~~spd 343 (346)
... ....-++.++++|-
T Consensus 334 sv~~~~sd~vNgvslnP~ 351 (406)
T KOG2919|consen 334 SVTGNYSDTVNGVSLNPI 351 (406)
T ss_pred cccccccccccceecCcc
Confidence 433 34445777888874
No 146
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.1e-23 Score=155.81 Aligned_cols=261 Identities=19% Similarity=0.240 Sum_probs=186.3
Q ss_pred CcccccCcceeeeccccccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccC------ceeee
Q 019117 1 MARTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG------GVIAA 73 (346)
Q Consensus 1 ~~~~a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~------~~~~~ 73 (346)
||..+.+....++.+ ......|.+....+.|.+.|..|.|.+ |+.|+.+|+++.|+ +.||.-... .....
T Consensus 28 mAtCSsDq~vkI~d~-~~~s~~W~~Ts~Wrah~~Si~rV~WAh--PEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~ 104 (361)
T KOG2445|consen 28 MATCSSDQTVKIWDS-TSDSGTWSCTSSWRAHDGSIWRVVWAH--PEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVR 104 (361)
T ss_pred eeeccCCCcEEEEec-cCCCCceEEeeeEEecCCcEEEEEecC--ccccceEEEEecCCceeeeeecccccccccceeEE
Confidence 344444444555554 335678899999999999999999986 45999999999999 999986311 11122
Q ss_pred EeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCc------ceeeeec-------cCCCceEEEEEeCC-
Q 019117 74 LQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE------KLHKSFV-------GHGDSINEIRTQPL- 139 (346)
Q Consensus 74 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~-------~~~~~v~~~~~~~~- 139 (346)
.... ......|+.++|++..-|- .||+++.||.++||+.-.. .+...++ .+..+..|+.|+|.
T Consensus 105 ~ttl--~DsrssV~DV~FaP~hlGL-klA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr 181 (361)
T KOG2445|consen 105 RTTL--VDSRSSVTDVKFAPKHLGL-KLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSR 181 (361)
T ss_pred EEEe--ecCCcceeEEEecchhcce-EEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeecccc
Confidence 2222 2366789999999888888 9999999999999986442 2222222 36677889999983
Q ss_pred -CCceEEEeeCC-----CCEEEEecCCCe-eEEEecccCCCCcceEEEEecCCCC---cEEEEEecCCeEEEEEccccce
Q 019117 140 -KPSLVVSASKD-----ESVRLWNVQTGI-CILIFAGAGGHRNEVLSVDFHPSDI---YRIASCGMDNTVKIWSMKEFWT 209 (346)
Q Consensus 140 -~~~~l~s~~~d-----~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~ 209 (346)
...+|+.|+.+ +.++||....+. .........+|..+|+.++|.|+-+ .+|++++.|| |+||.++....
T Consensus 182 ~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s 260 (361)
T KOG2445|consen 182 MHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARS 260 (361)
T ss_pred ccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccc
Confidence 34578888766 478999775433 4444444448999999999999433 6889999999 99999987433
Q ss_pred eeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCC
Q 019117 210 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKE 271 (346)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~ 271 (346)
..... .........+.....+..+..|...|..+.|+ |..|++.|.||.||+|...-..
T Consensus 261 ~i~~e---e~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 261 AIEEE---EVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNN 321 (361)
T ss_pred hhhhh---cccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhh
Confidence 22111 11112222233344566788999999999999 9999999999999999876543
No 147
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=2e-24 Score=179.50 Aligned_cols=251 Identities=15% Similarity=0.153 Sum_probs=196.6
Q ss_pred CCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeE
Q 019117 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII 110 (346)
Q Consensus 32 h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 110 (346)
..-.+.+++.+| +|+.||+|...| ++||++...+....+.. |+.+|.|+.+++-.-+..+||+++.|..|
T Consensus 458 ~r~G~R~~~vSp----~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eA-----HesEilcLeyS~p~~~~kLLASasrdRlI 528 (1080)
T KOG1408|consen 458 SRFGFRALAVSP----DGQHLASGDRGGNLRVYDLQELEYTCFMEA-----HESEILCLEYSFPVLTNKLLASASRDRLI 528 (1080)
T ss_pred cccceEEEEECC----CcceecccCccCceEEEEehhhhhhhheec-----ccceeEEEeecCchhhhHhhhhccCCceE
Confidence 345699999999 899999999888 99999988777666653 88899999988644444599999999999
Q ss_pred EEEEccCc-ceeeeeccCCCceEEEEEeCCCC-ceEEEeeCCCCEEEEecCCCeeEEEecc--cCCCCcceEEEEecCCC
Q 019117 111 RVIDVSNE-KLHKSFVGHGDSINEIRTQPLKP-SLVVSASKDESVRLWNVQTGICILIFAG--AGGHRNEVLSVDFHPSD 186 (346)
Q Consensus 111 ~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~ 186 (346)
+|||+... .+++++.+|...|+++.|...+. ..+++++.|..|.+--.+...-...+.. ..-....++.++..| .
T Consensus 529 HV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~ 607 (1080)
T KOG1408|consen 529 HVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-T 607 (1080)
T ss_pred EEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-C
Confidence 99998654 57789999999999999988332 5788999998876432221111122221 001235788999999 8
Q ss_pred CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEE
Q 019117 187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVL 264 (346)
Q Consensus 187 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~i 264 (346)
..++++++.|+.|+|||+.+++. .+....-..|++...-+..+ |.|+++...|.++.+
T Consensus 608 ~k~v~t~cQDrnirif~i~sgKq--------------------~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~ 667 (1080)
T KOG1408|consen 608 SKLVVTVCQDRNIRIFDIESGKQ--------------------VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCF 667 (1080)
T ss_pred cceEEEEecccceEEEeccccce--------------------eeeecccccCCCceEEEEECCCccEEEEeecCCceEE
Confidence 89999999999999999998442 11111222355555555555 889999999999999
Q ss_pred EcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117 265 WEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (346)
Q Consensus 265 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (346)
+|..+++ ++.+..+|..-|+.+.|++|- +.|++.+.||.|.||.+...
T Consensus 668 ~Df~sgE---------cvA~m~GHsE~VTG~kF~nDC--kHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 668 VDFVSGE---------CVAQMTGHSEAVTGVKFLNDC--KHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred EEeccch---------hhhhhcCcchheeeeeecccc--hhheeecCCceEEEEECchh
Confidence 9999988 899999999999999999998 78999999999999999764
No 148
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=5.4e-24 Score=176.99 Aligned_cols=286 Identities=13% Similarity=0.144 Sum_probs=196.5
Q ss_pred EEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEE----------cCCCCcEEEEee
Q 019117 37 YAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWAC----------NVDGIPFLVAGG 105 (346)
Q Consensus 37 ~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------~~~~~~~l~~~~ 105 (346)
.++.|.| ....|...-.|. ++|||+.+-..+.....+.. |...|+.+...+ -|.+ .+++++
T Consensus 328 IA~~Fde----t~~klscVYndhSlYvWDvrD~~kvgk~~s~ly--HS~ciW~Ve~~p~nv~~~~~aclp~~--cF~TCS 399 (1080)
T KOG1408|consen 328 IACQFDE----TTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLY--HSACIWDVENLPCNVHSPTAACLPRG--CFTTCS 399 (1080)
T ss_pred eEEEecC----CCceEEEEEcCceEEEEeccccccccceeeeee--ccceeeeeccccccccCcccccCCcc--ceeEec
Confidence 3567877 345666665666 99999987665554443332 555565554331 1444 589999
Q ss_pred cCCeEEEEEccCcceeee-------------------------------------eccCCCceEEEEEeCCCCceEEEee
Q 019117 106 INGIIRVIDVSNEKLHKS-------------------------------------FVGHGDSINEIRTQPLKPSLVVSAS 148 (346)
Q Consensus 106 ~dg~i~iwd~~~~~~~~~-------------------------------------~~~~~~~v~~~~~~~~~~~~l~s~~ 148 (346)
.|++|++|++..+..-.. .......+.+++.+| ++++|++|.
T Consensus 400 sD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGD 478 (1080)
T KOG1408|consen 400 SDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP-DGQHLASGD 478 (1080)
T ss_pred CCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECC-CcceecccC
Confidence 999999999865211000 001234689999999 999999999
Q ss_pred CCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCC--CCcEEEEEecCCeEEEEEccccceee---------eeceee
Q 019117 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS--DIYRIASCGMDNTVKIWSMKEFWTYV---------EKSFTW 217 (346)
Q Consensus 149 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~---------~~~~~~ 217 (346)
.-|+++||++...+.+..+. +|+..|.|+.|+.. ..++|++++.|+-|++||+...-... ..++.+
T Consensus 479 r~GnlrVy~Lq~l~~~~~~e---AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKF 555 (1080)
T KOG1408|consen 479 RGGNLRVYDLQELEYTCFME---AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKF 555 (1080)
T ss_pred ccCceEEEEehhhhhhhhee---cccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEE
Confidence 99999999999888887777 89999999999841 34789999999999999997621111 001111
Q ss_pred cCCC--CC-----------CCCcc-----ceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCc
Q 019117 218 TDLP--SK-----------FPTKY-----VQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEG 277 (346)
Q Consensus 218 ~~~~--~~-----------~~~~~-----~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 277 (346)
.... .. +.... ...+..+.......+..++.. .+++++++.|..|+|||+.+++
T Consensus 556 a~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK------ 629 (1080)
T KOG1408|consen 556 ACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK------ 629 (1080)
T ss_pred eecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccc------
Confidence 1100 00 00000 000001111112235555555 6799999999999999999998
Q ss_pred cccccccccC---CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce-eeeeeeeEEEEEecCCCC
Q 019117 278 TADILQKYPV---PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL-IARLICFSLHVKYNPQSV 345 (346)
Q Consensus 278 ~~~~~~~~~~---~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~spdg~ 345 (346)
..+.|++ |++....+...|.+ .|+++...|.++.++|+.+++.+. .+.+...++.+.|.||-+
T Consensus 630 ---q~k~FKgs~~~eG~lIKv~lDPSg--iY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCk 696 (1080)
T KOG1408|consen 630 ---QVKSFKGSRDHEGDLIKVILDPSG--IYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCK 696 (1080)
T ss_pred ---eeeeecccccCCCceEEEEECCCc--cEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccch
Confidence 4444544 66778888888888 899999999999999999999765 455666689999999875
No 149
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.93 E-value=4.9e-24 Score=161.49 Aligned_cols=271 Identities=14% Similarity=0.188 Sum_probs=199.7
Q ss_pred eeeeec--ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117 24 RVTNKL--QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (346)
Q Consensus 24 ~~~~~~--~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (346)
++++.+ ..|.+.-+.++|+-+-.....++|.++.-| |+|.|+.+++..+.+.. |+..|..+.+. |+..++
T Consensus 78 r~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~g-----hG~sINeik~~--p~~~ql 150 (385)
T KOG1034|consen 78 RLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRG-----HGGSINEIKFH--PDRPQL 150 (385)
T ss_pred eeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceec-----cCccchhhhcC--CCCCcE
Confidence 444444 347888999999973321245788888777 99999999998888875 88899999888 777669
Q ss_pred EEEeecCCeEEEEEccCcceeeee---ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEE------------
Q 019117 101 LVAGGINGIIRVIDVSNEKLHKSF---VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL------------ 165 (346)
Q Consensus 101 l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~------------ 165 (346)
+++++.|..|++|++++..++..+ .+|.+.|.++.|++ ++.+|++++.|.+|++|++...+...
T Consensus 151 vls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~ 229 (385)
T KOG1034|consen 151 VLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNK 229 (385)
T ss_pred EEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCC
Confidence 999999999999999999988876 56999999999999 88899999999999999998332111
Q ss_pred -------------EecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceec
Q 019117 166 -------------IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP 232 (346)
Q Consensus 166 -------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (346)
.+....-|...|-|+.|- ++++++-+.++.|..|.......... ...+.+.....
T Consensus 230 t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~---------~vkp~es~~Ti 297 (385)
T KOG1034|consen 230 TTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIH---------NVKPPESATTI 297 (385)
T ss_pred ccCcCCccccccccccccccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhh---------ccCCCccceee
Confidence 111122467777778775 47899999999999998854222100 00111112223
Q ss_pred eEEEeecccceEEEEec----CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEE
Q 019117 233 VFIASVHSNYVDCNRWL----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI 308 (346)
Q Consensus 233 ~~~~~~~~~~i~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~ 308 (346)
+..+......|.-+.|. ++.|+.|...|.|.+||++..++.. . ...........|...+||.|+ .+|+.
T Consensus 298 ~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~---~--ttl~~s~~~~tVRQ~sfS~dg--s~lv~ 370 (385)
T KOG1034|consen 298 LGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPK---C--TTLTHSKSGSTVRQTSFSRDG--SILVL 370 (385)
T ss_pred eeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCcc---C--ceEEeccccceeeeeeecccC--cEEEE
Confidence 44555556667777776 7899999999999999999876421 0 111112234578999999999 78999
Q ss_pred EcCCCcEEEEEcC
Q 019117 309 GNREGKIFVWELQ 321 (346)
Q Consensus 309 ~~~dg~i~iwd~~ 321 (346)
..+|+.|.-||.-
T Consensus 371 vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 371 VCDDGTVWRWDRV 383 (385)
T ss_pred EeCCCcEEEEEee
Confidence 9999999999853
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.93 E-value=6.8e-24 Score=169.22 Aligned_cols=260 Identities=13% Similarity=0.253 Sum_probs=194.6
Q ss_pred eEEEEEEeecCCCccEEEEEcC--Cc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117 36 LYAVVFNFIDSRYFNVFATVGG--NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (346)
Q Consensus 36 v~~~~~~p~~~~~~~~la~~~~--~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 112 (346)
+..+.|+. ...|++++. |. |++|. +.++ ...++..... .++.-.|++.. .... |+++|+..+.|+|
T Consensus 37 ~~s~~w~~-----~n~lvvas~~gdk~~~~~~-K~g~-~~~Vp~~~k~-~gd~~~Cv~~~--s~S~-y~~sgG~~~~Vki 105 (673)
T KOG4378|consen 37 DFSFNWQR-----RNFLVVASMAGDKVMRIKE-KDGK-TPEVPRVRKL-TGDNAFCVACA--SQSL-YEISGGQSGCVKI 105 (673)
T ss_pred ceeeeccc-----cceEEEeecCCceeEEEec-ccCC-CCccceeecc-ccchHHHHhhh--hcce-eeeccCcCceeee
Confidence 88999986 234555554 44 67776 4443 2222221111 22223333332 3345 9999999999999
Q ss_pred EEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEE
Q 019117 113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS 192 (346)
Q Consensus 113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 192 (346)
||++...+.+.+++|...|+++.++. ...+|++++..|.|.|..+.++.....|.. +....|+-+.|+|....+|.+
T Consensus 106 wdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~--~sgqsvRll~ys~skr~lL~~ 182 (673)
T KOG4378|consen 106 WDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTI--DSGQSVRLLRYSPSKRFLLSI 182 (673)
T ss_pred hhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceec--CCCCeEEEeecccccceeeEe
Confidence 99997778889999999999999998 889999999999999999999988888873 234567799999966778888
Q ss_pred EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEeecCeEEEEcCCC
Q 019117 193 CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKM 269 (346)
Q Consensus 193 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~ 269 (346)
++.+|.|.+||+..... ...-...|..+...++|+ ..+|++.+.|..|.+||+..
T Consensus 183 asd~G~VtlwDv~g~sp----------------------~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s 240 (673)
T KOG4378|consen 183 ASDKGAVTLWDVQGMSP----------------------IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS 240 (673)
T ss_pred eccCCeEEEEeccCCCc----------------------ccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc
Confidence 99999999999988321 122345688888899998 56899999999999999997
Q ss_pred CCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC-cceee-eeeeeEEEEEecCC
Q 019117 270 KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP-PVLIA-RLICFSLHVKYNPQ 343 (346)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~-~~~~~~~~~~~spd 343 (346)
.+ ....+. -..+...++|+++| .+|++|...|.|..||++..+ |+... .+...|++++|-|.
T Consensus 241 ~~---------s~~~l~-y~~Plstvaf~~~G--~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 241 QA---------STDRLT-YSHPLSTVAFSECG--TYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred cc---------ccceee-ecCCcceeeecCCc--eEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence 65 222222 24578899999999 799999999999999998854 44333 34455899998764
No 151
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=7.2e-23 Score=169.45 Aligned_cols=276 Identities=20% Similarity=0.262 Sum_probs=205.0
Q ss_pred ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCC--CccceEEEEEEEcCCCCcEEEEe
Q 019117 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDED--KEESFYTVSWACNVDGIPFLVAG 104 (346)
Q Consensus 28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~ 104 (346)
.+.||.+.|+++.|+| .+..|++++.|. +.+|...+..-+..-..-..+. .....+..-|+ |++. .+++-
T Consensus 262 ll~GHeDWV~sv~W~p----~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~--~n~~-~ii~~ 334 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHP----EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWS--PNSN-VIIAH 334 (764)
T ss_pred hhcCcccceEEEEEcc----chhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEc--CCCC-EEEEe
Confidence 3469999999999999 677888888888 9999876653333222222222 23346666665 8887 88899
Q ss_pred ecCCeEEEEEccCc---ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecC-CC----------------eeE
Q 019117 105 GINGIIRVIDVSNE---KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-TG----------------ICI 164 (346)
Q Consensus 105 ~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~----------------~~~ 164 (346)
+..|..++|..... .+...+.+|.+.|.+++|.| .+.+|++.+.|.+-+++-.- .. +++
T Consensus 335 g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~ 413 (764)
T KOG1063|consen 335 GRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCL 413 (764)
T ss_pred cccCcEEEEeccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccccccceee
Confidence 99999999983322 24456679999999999999 88999999999998887532 00 111
Q ss_pred E------------------EecccC-------------------------------------------------------
Q 019117 165 L------------------IFAGAG------------------------------------------------------- 171 (346)
Q Consensus 165 ~------------------~~~~~~------------------------------------------------------- 171 (346)
. .|..+.
T Consensus 414 ~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~ 493 (764)
T KOG1063|consen 414 SFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPL 493 (764)
T ss_pred ehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccc
Confidence 1 111000
Q ss_pred -----------------------------CCCcceEEEEecCCCCcEEEEEecC-----CeEEEEEccccceeeeeceee
Q 019117 172 -----------------------------GHRNEVLSVDFHPSDIYRIASCGMD-----NTVKIWSMKEFWTYVEKSFTW 217 (346)
Q Consensus 172 -----------------------------~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~ 217 (346)
+|...|++++.+| ++++++++... ..|++|+..+
T Consensus 494 ~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~----------- 561 (764)
T KOG1063|consen 494 AAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTAN----------- 561 (764)
T ss_pred ccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccc-----------
Confidence 8999999999998 99999998654 3689999887
Q ss_pred cCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEE
Q 019117 218 TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI 295 (346)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 295 (346)
-.....+.+|.-.|+.+.|+ +++|++.+.|.++.+|......... ......+.|.--|+++
T Consensus 562 ------------W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e-----~~fa~~k~HtRIIWdc 624 (764)
T KOG1063|consen 562 ------------WLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE-----FRFACLKAHTRIIWDC 624 (764)
T ss_pred ------------hhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchh-----hhhccccccceEEEEc
Confidence 34455789999999999999 8999999999999999985543211 0133367788889999
Q ss_pred EEeecCCcceEEEEcCCCcEEEEEcCCC--Ccce---eeeeeeeEEEEEecC
Q 019117 296 KFSCDFHYNAAAIGNREGKIFVWELQSS--PPVL---IARLICFSLHVKYNP 342 (346)
Q Consensus 296 ~~s~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~---~~~~~~~~~~~~~sp 342 (346)
.|+|++ .+++|+|.|.+|++|..... +.+. ..++...++.++|-|
T Consensus 625 sW~pde--~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~ 674 (764)
T KOG1063|consen 625 SWSPDE--KYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLP 674 (764)
T ss_pred ccCccc--ceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeec
Confidence 999999 67999999999999999887 3222 234455677777765
No 152
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.93 E-value=5.8e-24 Score=158.42 Aligned_cols=239 Identities=19% Similarity=0.261 Sum_probs=181.4
Q ss_pred cceeeeeecc-cCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCce-eeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117 21 REYRVTNKLQ-EGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGV-IAALQSYVDEDKEESFYTVSWACNVDGI 98 (346)
Q Consensus 21 ~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (346)
..++++..|. .+-+.|.||.|.| ++..+++-.++.|.+|++..+.. ...+.......+....++-+|+++.+|.
T Consensus 110 ~tlE~v~~Ldteavg~i~cvew~P----ns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn 185 (370)
T KOG1007|consen 110 STLECVASLDTEAVGKINCVEWEP----NSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN 185 (370)
T ss_pred chhhHhhcCCHHHhCceeeEEEcC----CCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccc
Confidence 3467777774 6667999999999 67889988878899999988776 4444443333456677888899888998
Q ss_pred cEEEEeecCCeEEEEEccCcceeeee-ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC-eeEEEecccCCCCcc
Q 019117 99 PFLVAGGINGIIRVIDVSNEKLHKSF-VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-ICILIFAGAGGHRNE 176 (346)
Q Consensus 99 ~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~ 176 (346)
.+++.+ |+++..||+++.+....+ .+|...|..+.|+|....+|++|++||.|++||.+.. .++..+. +|.-.
T Consensus 186 -qv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~---~HsHW 260 (370)
T KOG1007|consen 186 -QVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP---GHSHW 260 (370)
T ss_pred -eEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC---CCceE
Confidence 776665 899999999988776665 4688899999999977778999999999999999854 4666776 89999
Q ss_pred eEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCC-----CCCc-cceeceEEEeecccceEEEEec-
Q 019117 177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK-----FPTK-YVQFPVFIASVHSNYVDCNRWL- 249 (346)
Q Consensus 177 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~i~~~~~~- 249 (346)
|.++.|+|....++++++.|..|.+|............+........ ...+ .....+.++..|++.|.+++|+
T Consensus 261 vW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSs 340 (370)
T KOG1007|consen 261 VWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSS 340 (370)
T ss_pred EEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeecc
Confidence 99999999778899999999999999887743222111111110000 0001 1122355788999999999999
Q ss_pred --CCEEEEEeecCeEEEEcCC
Q 019117 250 --GDFILSKSVDNEIVLWEPK 268 (346)
Q Consensus 250 --~~~l~~~~~d~~i~iwd~~ 268 (346)
+=.+++-+.||++.|=.+.
T Consensus 341 adPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 341 ADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred CCCeeEEEeccCceEEeecCC
Confidence 5589999999999887664
No 153
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5e-25 Score=191.85 Aligned_cols=228 Identities=14% Similarity=0.261 Sum_probs=180.9
Q ss_pred CccceEEEEEEEcCCCCc---EEEEeecCCeEEEEEccCc------ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCC
Q 019117 82 KEESFYTVSWACNVDGIP---FLVAGGINGIIRVIDVSNE------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDES 152 (346)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 152 (346)
...+.+.++|. +.|.. +|+.|..||.|.+||...- ..+.+...|++.|..+.|++..+++|++|+.||.
T Consensus 63 s~~rF~kL~W~--~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~ge 140 (1049)
T KOG0307|consen 63 SSNRFNKLAWG--SYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGE 140 (1049)
T ss_pred ccccceeeeec--ccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCc
Confidence 45678889998 43432 5999999999999998652 3456777899999999999977789999999999
Q ss_pred EEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceec
Q 019117 153 VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP 232 (346)
Q Consensus 153 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (346)
|.|||+...+.-.... .....+.|.+++|+......|++++.+|.+.|||++. ..+
T Consensus 141 I~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~-----------------------~~p 196 (1049)
T KOG0307|consen 141 ILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK-----------------------KKP 196 (1049)
T ss_pred EEEeccCCcCCCCCCC-CCCCcccceEeccchhhhHHhhccCCCCCceeccccC-----------------------CCc
Confidence 9999998754443332 1135688999999986778899999999999999998 344
Q ss_pred eEEEeeccc--ceEEEEec---CCEEEEEeecC---eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcc
Q 019117 233 VFIASVHSN--YVDCNRWL---GDFILSKSVDN---EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN 304 (346)
Q Consensus 233 ~~~~~~~~~--~i~~~~~~---~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 304 (346)
+..+..+.. .+..+.|+ ...+++++.|. .|.+||++... .+++.+.+|...|.++.|++.+. .
T Consensus 197 ii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--------sP~k~~~~H~~GilslsWc~~D~-~ 267 (1049)
T KOG0307|consen 197 IIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--------SPLKILEGHQRGILSLSWCPQDP-R 267 (1049)
T ss_pred ccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--------CchhhhcccccceeeeccCCCCc-h
Confidence 555555554 36678888 34667766653 59999998754 37888899999999999999876 6
Q ss_pred eEEEEcCCCcEEEEEcCCCCcceeeeeeee-EEEEEecCCC
Q 019117 305 AAAIGNREGKIFVWELQSSPPVLIARLICF-SLHVKYNPQS 344 (346)
Q Consensus 305 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~spdg 344 (346)
+|++++.|+.|.+|+.++++.+..+...+. +..+.|.|..
T Consensus 268 lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~ 308 (1049)
T KOG0307|consen 268 LLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRN 308 (1049)
T ss_pred hhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCC
Confidence 999999999999999999997776665443 6679998854
No 154
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.92 E-value=6.4e-23 Score=153.04 Aligned_cols=282 Identities=16% Similarity=0.288 Sum_probs=202.2
Q ss_pred ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcC-----CcEEEEEecc--CceeeeEeeeecCCCccceEEEEEEEc
Q 019117 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGG-----NRVTVYQCLE--GGVIAALQSYVDEDKEESFYTVSWACN 94 (346)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~-----~~v~i~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~ 94 (346)
..+....+.. .-+++++.|+.. +....+||.|+- +.|.|..+.. ++.+..- ...|.-+++.+.|.++
T Consensus 34 r~~eiy~Y~a-p~~lya~~Ws~~-~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a----~fd~~YP~tK~~wiPd 107 (364)
T KOG0290|consen 34 RRKEIYTYNA-PWPLYAMNWSVR-PDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDA----NFDHPYPVTKLMWIPD 107 (364)
T ss_pred ccceEEEecC-CCceeeeccccC-CCcceeEEEeeeccccCCeeEEEEEccCCCceeccC----CCCCCCCccceEecCC
Confidence 3333444433 346899999963 335678888874 2366665543 2222221 1347778888888866
Q ss_pred CCCC--cEEEEeecCCeEEEEEccCcc--e--eee-----eccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee
Q 019117 95 VDGI--PFLVAGGINGIIRVIDVSNEK--L--HKS-----FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC 163 (346)
Q Consensus 95 ~~~~--~~l~~~~~dg~i~iwd~~~~~--~--~~~-----~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 163 (346)
+.|. .+||+.+ ..+++|.+...+ . ... -..+..++++..|+..+.+++.+++-|-+..|||++++..
T Consensus 108 ~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~ 185 (364)
T KOG0290|consen 108 SKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS 185 (364)
T ss_pred ccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc
Confidence 5432 2566554 479999987422 1 111 1236679999999998999999999999999999998732
Q ss_pred ---EEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc
Q 019117 164 ---ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240 (346)
Q Consensus 164 ---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (346)
...+- +|..+|..++|...+...+++.+.||.+++||+|..... ..++.-....
T Consensus 186 ~~vkTQLI---AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS--------------------TIIYE~p~~~ 242 (364)
T KOG0290|consen 186 GTVKTQLI---AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS--------------------TIIYEDPSPS 242 (364)
T ss_pred cceeeEEE---ecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc--------------------eEEecCCCCC
Confidence 23333 699999999999755688999999999999999983320 0111111114
Q ss_pred cceEEEEec---CCEEEEEeec-CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEE
Q 019117 241 NYVDCNRWL---GDFILSKSVD-NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 316 (346)
Q Consensus 241 ~~i~~~~~~---~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~ 316 (346)
.+...++|+ .+++++-..| ..|.|-|++... .++.++.+|.+.|..++|.|... ..+++++.|..+.
T Consensus 243 ~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~--------tpva~L~~H~a~VNgIaWaPhS~-~hictaGDD~qal 313 (364)
T KOG0290|consen 243 TPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC--------TPVARLRNHQASVNGIAWAPHSS-SHICTAGDDCQAL 313 (364)
T ss_pred CcceeeccCcCCchHHhhhhcCCceEEEEEecCCC--------cceehhhcCcccccceEecCCCC-ceeeecCCcceEE
Confidence 456777887 6688887665 569999999865 37889999999999999999887 6999999999999
Q ss_pred EEEcCCCC------cceeeeeeeeEEEEEecCC
Q 019117 317 VWELQSSP------PVLIARLICFSLHVKYNPQ 343 (346)
Q Consensus 317 iwd~~~~~------~~~~~~~~~~~~~~~~spd 343 (346)
+||+.... ++..+...+.++.+.|+|.
T Consensus 314 iWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~ 346 (364)
T KOG0290|consen 314 IWDLQQMPRENGEDPILAYTAGGEVNQIQWSSS 346 (364)
T ss_pred EEecccccccCCCCchhhhhccceeeeeeeccc
Confidence 99997632 4556677778999999974
No 155
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=1.4e-23 Score=158.76 Aligned_cols=238 Identities=16% Similarity=0.233 Sum_probs=185.6
Q ss_pred CCceEEEEEEe----ecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccce-EEEEEEEcCCCCcEEEEeec
Q 019117 33 KRPLYAVVFNF----IDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESF-YTVSWACNVDGIPFLVAGGI 106 (346)
Q Consensus 33 ~~~v~~~~~~p----~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~l~~~~~ 106 (346)
...|+.-+|-+ .+| +..++|+.+.+. |++||..+|+....+..+. |.+.+ .+.++.|+|||. +|++|.
T Consensus 104 g~tvydy~wYs~M~s~qP-~t~l~a~ssr~~PIh~wdaftG~lraSy~~yd---h~de~taAhsL~Fs~DGe-qlfaGy- 177 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQP-STNLFAVSSRDQPIHLWDAFTGKLRASYRAYD---HQDEYTAAHSLQFSPDGE-QLFAGY- 177 (406)
T ss_pred CCEEEEEEeeeccccCCC-ccceeeeccccCceeeeeccccccccchhhhh---hHHhhhhheeEEecCCCC-eEeecc-
Confidence 45688888875 233 557888888888 9999999999887776653 33333 335667779999 887776
Q ss_pred CCeEEEEEc-cCcce--eeee-----ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceE
Q 019117 107 NGIIRVIDV-SNEKL--HKSF-----VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 178 (346)
Q Consensus 107 dg~i~iwd~-~~~~~--~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 178 (346)
...|+++|+ +.|+. +... .+..+.+.+++|+|.+...++.|+...++-|+.-..+.++..+. +|.+.|+
T Consensus 178 krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg---gh~gGvT 254 (406)
T KOG2919|consen 178 KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG---GHGGGVT 254 (406)
T ss_pred cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec---ccCCCee
Confidence 678999998 45542 1111 23467899999999888899999999999999988899999888 8999999
Q ss_pred EEEecCCCCcEEEEEec-CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc-ceEEEEec----CCE
Q 019117 179 SVDFHPSDIYRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN-YVDCNRWL----GDF 252 (346)
Q Consensus 179 ~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~----~~~ 252 (346)
.+.|.+ +++.|++|.. |..|..||+|.. ..++..+..|.. .-..|.|+ +++
T Consensus 255 hL~~~e-dGn~lfsGaRk~dkIl~WDiR~~----------------------~~pv~~L~rhv~~TNQRI~FDld~~~~~ 311 (406)
T KOG2919|consen 255 HLQWCE-DGNKLFSGARKDDKILCWDIRYS----------------------RDPVYALERHVGDTNQRILFDLDPKGEI 311 (406)
T ss_pred eEEecc-CcCeecccccCCCeEEEEeehhc----------------------cchhhhhhhhccCccceEEEecCCCCce
Confidence 999998 8888888876 678999999983 446666766665 44556665 889
Q ss_pred EEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC
Q 019117 253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE 312 (346)
Q Consensus 253 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d 312 (346)
|++|+.||.|++||++..- ..+..+..+...+..++++|-- .++|+++..
T Consensus 312 LasG~tdG~V~vwdlk~~g--------n~~sv~~~~sd~vNgvslnP~m--pilatssGq 361 (406)
T KOG2919|consen 312 LASGDTDGSVRVWDLKDLG--------NEVSVTGNYSDTVNGVSLNPIM--PILATSSGQ 361 (406)
T ss_pred eeccCCCccEEEEecCCCC--------CcccccccccccccceecCccc--ceeeeccCc
Confidence 9999999999999999843 1455666677889999999986 678887754
No 156
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.3e-23 Score=164.62 Aligned_cols=252 Identities=17% Similarity=0.254 Sum_probs=192.2
Q ss_pred eeecccCCCceEEEEEEeecCCCcc-EEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE
Q 019117 26 TNKLQEGKRPLYAVVFNFIDSRYFN-VFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (346)
Q Consensus 26 ~~~~~~h~~~v~~~~~~p~~~~~~~-~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 103 (346)
++.+.-...+|.+.+|.| +|. .+++++... ++.||+.+.+..+.-+.... ....+. .|..+++++ +|+.
T Consensus 250 lqS~~l~~fPi~~a~f~p----~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~--e~~~~e--~FeVShd~~-fia~ 320 (514)
T KOG2055|consen 250 LQSIHLEKFPIQKAEFAP----NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGV--EEKSME--RFEVSHDSN-FIAI 320 (514)
T ss_pred heeeeeccCccceeeecC----CCceEEEecccceEEEEeeccccccccccCCCCc--ccchhh--eeEecCCCC-eEEE
Confidence 334444567899999999 666 777777777 99999987765433222111 122332 355569999 9999
Q ss_pred eecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcce--EEEE
Q 019117 104 GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV--LSVD 181 (346)
Q Consensus 104 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v--~~~~ 181 (346)
.+..|.|.+....+++.+..++ -.+.|..++|+. ++..|++++.+|.|.+||++...++..+. ..+.| ++++
T Consensus 321 ~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~----D~G~v~gts~~ 394 (514)
T KOG2055|consen 321 AGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFV----DDGSVHGTSLC 394 (514)
T ss_pred cccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEe----ecCccceeeee
Confidence 9999999999999999998888 568899999998 77888888889999999999999999997 44444 4666
Q ss_pred ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEee-
Q 019117 182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV- 258 (346)
Q Consensus 182 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~- 258 (346)
.++ ++.+|++|+..|.|.|||..+.. ....+.|+..+..-...|+++.|+ .++|+.++.
T Consensus 395 ~S~-ng~ylA~GS~~GiVNIYd~~s~~-----------------~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~ 456 (514)
T KOG2055|consen 395 ISL-NGSYLATGSDSGIVNIYDGNSCF-----------------ASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRV 456 (514)
T ss_pred ecC-CCceEEeccCcceEEEeccchhh-----------------ccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhc
Confidence 677 88899999999999999987621 111245666666667789999998 677777765
Q ss_pred -cCeEEEEcCCCCCCCCCCccccccccccC---CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117 259 -DNEIVLWEPKMKEQSPGEGTADILQKYPV---PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (346)
Q Consensus 259 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~ 321 (346)
+..+|+-.+.+.. ....++. .-+.|+|++|||.+ .+||.|..+|.+.+|.+.
T Consensus 457 ~knalrLVHvPS~T---------VFsNfP~~n~~vg~vtc~aFSP~s--G~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 457 KKNALRLVHVPSCT---------VFSNFPTSNTKVGHVTCMAFSPNS--GYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cccceEEEecccee---------eeccCCCCCCcccceEEEEecCCC--ceEEeecCCCceeeEeec
Confidence 6789998887654 2223322 34679999999988 699999999999999875
No 157
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=2.7e-23 Score=164.00 Aligned_cols=232 Identities=11% Similarity=0.119 Sum_probs=177.9
Q ss_pred CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc----eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEe
Q 019117 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK----LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 157 (346)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 157 (346)
+.+.|.+++|.+..+-+ ++++|...|.|-+||+.+.+ -+..+..|..+|.++.|+|.+...+++.|.||+|++-|
T Consensus 185 ~~~Rit~l~fHPt~~~~-lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D 263 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRK-LVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD 263 (498)
T ss_pred cccceEEEEecccCcce-EEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeee
Confidence 67789999988554445 99999999999999996332 35567789999999999999899999999999999999
Q ss_pred cCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe
Q 019117 158 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 237 (346)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (346)
++.......+.. ......+..+.|+. +...++.++.=|...+||++... .....+.
T Consensus 264 ~~~~i~e~v~s~-~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~----------------------s~~~~~~ 319 (498)
T KOG4328|consen 264 FEGNISEEVLSL-DTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDG----------------------SEYENLR 319 (498)
T ss_pred ecchhhHHHhhc-CccceeeeeccccC-CCccEEEeecccceEEEEeecCC----------------------ccchhhh
Confidence 986644333321 02456778888987 66666667666799999999833 2345667
Q ss_pred ecccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCc
Q 019117 238 VHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK 314 (346)
Q Consensus 238 ~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~ 314 (346)
.|...|.+++++ ..+|++++.|++.+|||++....... ++-..-.|...|.++.|||++ -.|++.+.|..
T Consensus 320 lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-----p~lst~~HrrsV~sAyFSPs~--gtl~TT~~D~~ 392 (498)
T KOG4328|consen 320 LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-----PFLSTLPHRRSVNSAYFSPSG--GTLLTTCQDNE 392 (498)
T ss_pred hhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC-----cceecccccceeeeeEEcCCC--CceEeeccCCc
Confidence 788899999998 67999999999999999997653221 223334578899999999999 45999999999
Q ss_pred EEEEEc----CCCCcceeeeeeee------EEEEEecCCCC
Q 019117 315 IFVWEL----QSSPPVLIARLICF------SLHVKYNPQSV 345 (346)
Q Consensus 315 i~iwd~----~~~~~~~~~~~~~~------~~~~~~spdg~ 345 (346)
|+|||. ...++...+.+... .....|.||-.
T Consensus 393 IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~ 433 (498)
T KOG4328|consen 393 IRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYN 433 (498)
T ss_pred eEEeecccccccCCccceeeccCcccccccchhheeCCCcc
Confidence 999999 45555556555433 23477888754
No 158
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.7e-23 Score=156.05 Aligned_cols=223 Identities=13% Similarity=0.180 Sum_probs=168.3
Q ss_pred EEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEe
Q 019117 88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF 167 (346)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 167 (346)
+.++.|++.|. +||+|..||.|.|||+.+...-+.+.+|..+|.+++|++ ++..|+++|.|..|.+||+..|.+++.+
T Consensus 26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcc-eeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEE
Confidence 35556669999 999999999999999999998899999999999999999 9999999999999999999999999999
Q ss_pred cccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEE
Q 019117 168 AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR 247 (346)
Q Consensus 168 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 247 (346)
+ ..++|..+.|+|.+.+..+..-.+..-.+-++........ +.. . ...+... -.+..
T Consensus 104 r----f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~L-p~d-----------~-d~dln~s------as~~~ 160 (405)
T KOG1273|consen 104 R----FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVL-PKD-----------D-DGDLNSS------ASHGV 160 (405)
T ss_pred E----ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeec-cCC-----------C-ccccccc------ccccc
Confidence 8 8999999999996667666666665555555554111000 000 0 0000000 11123
Q ss_pred ec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCC-cCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC--
Q 019117 248 WL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE-CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS-- 322 (346)
Q Consensus 248 ~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~-- 322 (346)
|+ |+++++|...|.+.++|..+.+ ++..++... ..|..+.++..| ++|+.-+.|..|+.|+++.
T Consensus 161 fdr~g~yIitGtsKGkllv~~a~t~e---------~vas~rits~~~IK~I~~s~~g--~~liiNtsDRvIR~ye~~di~ 229 (405)
T KOG1273|consen 161 FDRRGKYIITGTSKGKLLVYDAETLE---------CVASFRITSVQAIKQIIVSRKG--RFLIINTSDRVIRTYEISDID 229 (405)
T ss_pred ccCCCCEEEEecCcceEEEEecchhe---------eeeeeeechheeeeEEEEeccC--cEEEEecCCceEEEEehhhhc
Confidence 43 9999999999999999999876 555555444 678899999999 7899999999999999873
Q ss_pred -----CCcceeeeeeee-----EEEEEecCCCCC
Q 019117 323 -----SPPVLIARLICF-----SLHVKYNPQSVY 346 (346)
Q Consensus 323 -----~~~~~~~~~~~~-----~~~~~~spdg~~ 346 (346)
+++....++..- ..+++||.||.|
T Consensus 230 ~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY 263 (405)
T KOG1273|consen 230 DEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY 263 (405)
T ss_pred ccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence 223223333322 346888988876
No 159
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.91 E-value=2.5e-24 Score=181.64 Aligned_cols=268 Identities=13% Similarity=0.229 Sum_probs=211.1
Q ss_pred cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (346)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (346)
+..+....|.||.++|+|+.|.. .|.++.+|++|. |+||...++.++..+.+ |.+.++.++.. .++.
T Consensus 178 qkmk~ikrLlgH~naVyca~fDr----tg~~Iitgsdd~lvKiwS~et~~~lAs~rG-----hs~ditdlavs--~~n~- 245 (1113)
T KOG0644|consen 178 QKMKNIKRLLGHRNAVYCAIFDR----TGRYIITGSDDRLVKIWSMETARCLASCRG-----HSGDITDLAVS--SNNT- 245 (1113)
T ss_pred HHHHHHHHHHhhhhheeeeeecc----ccceEeecCccceeeeeeccchhhhccCCC-----Cccccchhccc--hhhh-
Confidence 45667778899999999999987 889999999999 99999999988888876 77778888876 4555
Q ss_pred EEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccC-CCCcceE
Q 019117 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG-GHRNEVL 178 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~ 178 (346)
++++++.|..|++|.+.++.++..+.+|++.|++++|+| -. +.+.||++++||.+-.-.+..-.... .....+.
T Consensus 246 ~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP-~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~ 320 (1113)
T KOG0644|consen 246 MIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSP-RA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVD 320 (1113)
T ss_pred hhhhcccCceEEEEecCCCchHHHHhccccceeeeccCc-cc----cCCCCCceEeccccccccccCCCCCCccccccee
Confidence 899999999999999999999999999999999999999 32 77899999999988221111111100 1234566
Q ss_pred EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEE
Q 019117 179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILS 255 (346)
Q Consensus 179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~ 255 (346)
++.|.. .+.-++|++.|+.-..|.+.. +..+...+.-+.++ ..+.++
T Consensus 321 s~~~~~-~~~~f~Tgs~d~ea~n~e~~~-----------------------------l~~~~~~lif~t~ssd~~~~~~~ 370 (1113)
T KOG0644|consen 321 SILFEN-NGDRFLTGSRDGEARNHEFEQ-----------------------------LAWRSNLLIFVTRSSDLSSIVVT 370 (1113)
T ss_pred eeeccc-cccccccccCCcccccchhhH-----------------------------hhhhccceEEEecccccccccee
Confidence 677765 788899999999998887765 12222222222222 356777
Q ss_pred EeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee-ee
Q 019117 256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI-CF 334 (346)
Q Consensus 256 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~ 334 (346)
+-.+..+.+|++.++. .++.+.+|...+..+.++|-.. +...+++.||+..|||+..|.+...+... +.
T Consensus 371 ar~~~~~~vwnl~~g~---------l~H~l~ghsd~~yvLd~Hpfn~-ri~msag~dgst~iwdi~eg~pik~y~~gh~k 440 (1113)
T KOG0644|consen 371 ARNDHRLCVWNLYTGQ---------LLHNLMGHSDEVYVLDVHPFNP-RIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGK 440 (1113)
T ss_pred eeeeeEeeeeecccch---------hhhhhcccccceeeeeecCCCc-HhhhhccCCCceEeeecccCCcceeeecccce
Confidence 7788899999999887 6788889999999999999775 67888999999999999999988877643 23
Q ss_pred EEEEEecCCCC
Q 019117 335 SLHVKYNPQSV 345 (346)
Q Consensus 335 ~~~~~~spdg~ 345 (346)
....+||+||.
T Consensus 441 l~d~kFSqdgt 451 (1113)
T KOG0644|consen 441 LVDGKFSQDGT 451 (1113)
T ss_pred eeccccCCCCc
Confidence 66789999985
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=6.3e-23 Score=163.78 Aligned_cols=253 Identities=14% Similarity=0.181 Sum_probs=186.1
Q ss_pred cEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe--ecCCeEEEEEccCc--ceeeeec
Q 019117 50 NVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG--GINGIIRVIDVSNE--KLHKSFV 125 (346)
Q Consensus 50 ~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~--~~~~~~~ 125 (346)
++.+..++|.+++||.........+..+.. ...+..++|. ..+ +|+++ +.|..+++|.-... +....-+
T Consensus 4 Nl~~aS~gd~~kl~D~s~~~~~~~~~~~t~---~pg~~s~~w~--~~n--~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k 76 (673)
T KOG4378|consen 4 NLHVASTGDKTKLSDFSDLETKSEYVHQTA---EPGDFSFNWQ--RRN--FLVVASMAGDKVMRIKEKDGKTPEVPRVRK 76 (673)
T ss_pred ceeeeccCCceEEeecccccCccccccCCC---CCcceeeecc--ccc--eEEEeecCCceeEEEecccCCCCccceeec
Confidence 466666677899999987766555554432 2337777776 333 34444 56778999974322 1212112
Q ss_pred cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEcc
Q 019117 126 GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 205 (346)
Q Consensus 126 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 205 (346)
...+.-.|++... ...++++|+..+.|+|||++...+.+.++ +|...|+++.++. ...+|++++..|-|.+..+.
T Consensus 77 ~~gd~~~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~~kl~hr~lk---dh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~ 151 (673)
T KOG4378|consen 77 LTGDNAFCVACAS-QSLYEISGGQSGCVKIWDLRAKLIHRFLK---DHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTK 151 (673)
T ss_pred cccchHHHHhhhh-cceeeeccCcCceeeehhhHHHHHhhhcc---CCcceeEEEEecC-CcceeEEeccCCcEEEEecc
Confidence 2223445666555 55799999999999999999766666777 8999999999996 78899999999999999998
Q ss_pred ccceeeeeceeecCCCCCCCCccceeceEEEeec-ccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCccccc
Q 019117 206 EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH-SNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADI 281 (346)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 281 (346)
+... ...+... ...|+-+.|+ ..+|.+++.+|.|.+||.....+ .
T Consensus 152 t~~~-----------------------tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp--------~ 200 (673)
T KOG4378|consen 152 TKQK-----------------------TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP--------I 200 (673)
T ss_pred cCcc-----------------------ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc--------c
Confidence 8332 1122222 2335567776 45788899999999999987653 3
Q ss_pred cccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117 282 LQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 282 ~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~ 346 (346)
..-...|..+...++|+|..+ .+|++.+.|..|.+||..............+...++|+|+|-|
T Consensus 201 ~~~~~~HsAP~~gicfspsne-~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~ 264 (673)
T KOG4378|consen 201 FHASEAHSAPCRGICFSPSNE-ALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTY 264 (673)
T ss_pred cchhhhccCCcCcceecCCcc-ceEEEecccceEEEeecccccccceeeecCCcceeeecCCceE
Confidence 444566888999999999887 7999999999999999998877777777778889999999965
No 161
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.90 E-value=3e-22 Score=149.52 Aligned_cols=257 Identities=15% Similarity=0.209 Sum_probs=190.6
Q ss_pred ccCCCceEEEEEEeecC-CCccEEEEEcCCcEEEEEeccCcee----eeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117 30 QEGKRPLYAVVFNFIDS-RYFNVFATVGGNRVTVYQCLEGGVI----AALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~-~~~~~la~~~~~~v~i~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 104 (346)
..|.-+++.+-|.|+.. ..-++||++ +|.+++|.+...+.. ..+.......+..++++..|. .-..+++.+.
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs-~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWn--e~dp~~igtS 169 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATS-SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWN--EVDPNLIGTS 169 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcc-cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccc--cCCcceeEee
Confidence 35888999999999431 122455555 678999998743221 122222333455677777776 3333399999
Q ss_pred ecCCeEEEEEccCcce---eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117 105 GINGIIRVIDVSNEKL---HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 181 (346)
Q Consensus 105 ~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 181 (346)
+-|-+..|||++++.. ...+-+|..+|.+|+|...+.+.|++.+.||.|++||++..+.-..+-.......+...++
T Consensus 170 SiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLs 249 (364)
T KOG0290|consen 170 SIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLS 249 (364)
T ss_pred cccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeec
Confidence 9999999999998733 4456679999999999986678999999999999999998766555543323356888999
Q ss_pred ecCCCCcEEEEEecCC-eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEe
Q 019117 182 FHPSDIYRIASCGMDN-TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKS 257 (346)
Q Consensus 182 ~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~ 257 (346)
|++++.+++++-..|. .|.+.|+|.. ..++..+..|...|..++|. ...|++++
T Consensus 250 wnkqDpnymATf~~dS~~V~iLDiR~P----------------------~tpva~L~~H~a~VNgIaWaPhS~~hictaG 307 (364)
T KOG0290|consen 250 WNKQDPNYMATFAMDSNKVVILDIRVP----------------------CTPVARLRNHQASVNGIAWAPHSSSHICTAG 307 (364)
T ss_pred cCcCCchHHhhhhcCCceEEEEEecCC----------------------CcceehhhcCcccccceEecCCCCceeeecC
Confidence 9998889999887765 5999999983 35788899999999999998 67999999
Q ss_pred ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEE
Q 019117 258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV 317 (346)
Q Consensus 258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~i 317 (346)
.|..+.+||+...-.. ....++..+. -.+.|..+.|++... .+++.+... ++.+
T Consensus 308 DD~qaliWDl~q~~~~---~~~dPilay~-a~~EVNqi~Ws~~~~-Dwiai~~~k-klei 361 (364)
T KOG0290|consen 308 DDCQALIWDLQQMPRE---NGEDPILAYT-AGGEVNQIQWSSSQP-DWIAICFGK-KLEI 361 (364)
T ss_pred CcceEEEEeccccccc---CCCCchhhhh-ccceeeeeeecccCC-CEEEEEecC-eeeE
Confidence 9999999999875431 1222344444 456899999997654 688877643 4443
No 162
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.2e-21 Score=167.29 Aligned_cols=228 Identities=14% Similarity=0.150 Sum_probs=180.4
Q ss_pred CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCc-ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC
Q 019117 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160 (346)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 160 (346)
|....+.++|. |+|+ +|++++.||.|++|+.... +.-..+..+...|.+++.. .++|++|+.+++|.+|.+..
T Consensus 12 ht~G~t~i~~d--~~ge-fi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~---s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 12 HTGGLTLICYD--PDGE-FICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY---SNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred ccCceEEEEEc--CCCC-EEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec---ccceEEeeccceEEEeeCCC
Confidence 55566667766 9999 9999999999999997665 4444555578888888875 46999999999999999998
Q ss_pred CeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc
Q 019117 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240 (346)
Q Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (346)
++.-..+. ...-++++++|+. +|.+++.|+.|-.|++-++.. ......+.+|.
T Consensus 86 ~~~~~iL~---Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D-----------------------~s~~~~lrgh~ 138 (933)
T KOG1274|consen 86 GEEDTILA---RFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDD-----------------------SSQEKVLRGHD 138 (933)
T ss_pred CCccceee---eeeccceEEEEec-CCcEEEeecCceeEEEEeccc-----------------------cchheeecccC
Confidence 87665555 3667899999997 999999999999999999988 34567889999
Q ss_pred cceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCC-CcCeeEEEEeecCCcceEEEEcCCCcEEE
Q 019117 241 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP-ECDIWFIKFSCDFHYNAAAIGNREGKIFV 317 (346)
Q Consensus 241 ~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~~l~~~~~dg~i~i 317 (346)
.+|.++.|+ +++||+.+.||.|++||+.++.......... ...... ...+..++|+|++ ..++..+.|+.|++
T Consensus 139 apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~--k~n~~~~s~i~~~~aW~Pk~--g~la~~~~d~~Vkv 214 (933)
T KOG1274|consen 139 APVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVD--KDNEFILSRICTRLAWHPKG--GTLAVPPVDNTVKV 214 (933)
T ss_pred CceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCC--ccccccccceeeeeeecCCC--CeEEeeccCCeEEE
Confidence 999999999 8899999999999999999876322211111 111111 3456778999998 56888888999999
Q ss_pred EEcCCCCcceeeeeee---eEEEEEecCCCCC
Q 019117 318 WELQSSPPVLIARLIC---FSLHVKYNPQSVY 346 (346)
Q Consensus 318 wd~~~~~~~~~~~~~~---~~~~~~~spdg~~ 346 (346)
|+..+.+......... ....++|||+|+|
T Consensus 215 y~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 215 YSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred EccCCceeheeecccccccceEEEEEcCCCcE
Confidence 9999998766554432 2678999999987
No 163
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.90 E-value=2.5e-21 Score=163.81 Aligned_cols=255 Identities=18% Similarity=0.198 Sum_probs=191.9
Q ss_pred CCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCce--eeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV--IAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (346)
Q Consensus 32 h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 108 (346)
-...|+|++|+|.+ ..++|.|..+| |.+||+..+.. ...+. .....|...+..+.|..++.+. -+++++.||
T Consensus 241 ~~s~v~~~~f~p~~---p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls-~~~~sh~~~v~~vvW~~~~~~~-~f~s~ssDG 315 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFD---PNLLAGGCYNGQVVLWDLRKGSDTPPSGLS-ALEVSHSEPVTAVVWLQNEHNT-EFFSLSSDG 315 (555)
T ss_pred cCCceeEEEeccCC---cceEEeeccCceEEEEEccCCCCCCCcccc-cccccCCcCeEEEEEeccCCCC-ceEEEecCC
Confidence 45789999999954 58999999998 99999987765 33333 3334588999999999777664 788999999
Q ss_pred eEEEEEccCcce-e-----eeec------cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEE----E-ecccC
Q 019117 109 IIRVIDVSNEKL-H-----KSFV------GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL----I-FAGAG 171 (346)
Q Consensus 109 ~i~iwd~~~~~~-~-----~~~~------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~----~-~~~~~ 171 (346)
.|..|+++.-.. . .... .-...+++++|.+.+...|+.|+++|.|.--+....+.-. + .....
T Consensus 316 ~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~ 395 (555)
T KOG1587|consen 316 SICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFI 395 (555)
T ss_pred cEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccccc
Confidence 999998764321 1 1111 1234689999999899999999999998773332221111 1 11122
Q ss_pred CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--
Q 019117 172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-- 249 (346)
Q Consensus 172 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 249 (346)
.|.++|+++.++|.....+++++ |.++++|.... ...|+..+..+.+.|++++|+
T Consensus 396 ~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~----------------------~~~Pl~~~~~~~~~v~~vaWSpt 452 (555)
T KOG1587|consen 396 THIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDV----------------------IASPLLSLDSSPDYVTDVAWSPT 452 (555)
T ss_pred ccCcceEeeecCCCccceeeeec-cceeEeccccC----------------------CCCcchhhhhccceeeeeEEcCc
Confidence 68899999999996666666666 99999999873 145777888888899999999
Q ss_pred -CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117 250 -GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (346)
Q Consensus 250 -~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (346)
+..|+++..||.+.+||+...... ++.+..........+.|++.+ ++|++|...|.+++|++...
T Consensus 453 rpavF~~~d~~G~l~iWDLl~~~~~-------Pv~s~~~~~~~l~~~~~s~~g--~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 453 RPAVFATVDGDGNLDIWDLLQDDEE-------PVLSQKVCSPALTRVRWSPNG--KLLAVGDANGTTHILKLSES 518 (555)
T ss_pred CceEEEEEcCCCceehhhhhccccC-------CcccccccccccceeecCCCC--cEEEEecCCCcEEEEEcCch
Confidence 668999999999999999876532 334444445566778888888 79999999999999999653
No 164
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.2e-20 Score=156.16 Aligned_cols=253 Identities=16% Similarity=0.195 Sum_probs=191.2
Q ss_pred ceeeeeecccC-CCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117 22 EYRVTNKLQEG-KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (346)
Q Consensus 22 ~~~~~~~~~~h-~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (346)
.|-+...+.++ ...|-+++|++ .+++|-++..+.|.-||+.++++...+.. ..+.+++++.+ |.+. .
T Consensus 57 ~w~~~~vi~g~~drsIE~L~W~e----~~RLFS~g~sg~i~EwDl~~lk~~~~~d~-----~gg~IWsiai~--p~~~-~ 124 (691)
T KOG2048|consen 57 NWFLEPVIHGPEDRSIESLAWAE----GGRLFSSGLSGSITEWDLHTLKQKYNIDS-----NGGAIWSIAIN--PENT-I 124 (691)
T ss_pred CceeeEEEecCCCCceeeEEEcc----CCeEEeecCCceEEEEecccCceeEEecC-----CCcceeEEEeC--Cccc-e
Confidence 45556666666 46799999996 44555555444499999999998877764 67889999887 7777 9
Q ss_pred EEEeecCCeEEEEEccCccee--eeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecc-----cCCC
Q 019117 101 LVAGGINGIIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG-----AGGH 173 (346)
Q Consensus 101 l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~~ 173 (346)
++.|+.||.+..++...++.. ..+...++.|.+++|+| ++..+++|+.||.|++||...+..+..... ....
T Consensus 125 l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~ 203 (691)
T KOG2048|consen 125 LAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKRE 203 (691)
T ss_pred EEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEEecccCceEEEEEcCCCceEEEeeecccccccCC
Confidence 999999998888887777644 34445678999999999 888999999999999999999887762221 1113
Q ss_pred CcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CC
Q 019117 174 RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD 251 (346)
Q Consensus 174 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~ 251 (346)
..-|.++.|- ....|++|...|+|.+||... ...+.....|...|.+++.. ++
T Consensus 204 ~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~-----------------------gTLiqS~~~h~adVl~Lav~~~~d 258 (691)
T KOG2048|consen 204 PTIVWSVLFL--RDSTIASGDSAGTVTFWDSIF-----------------------GTLIQSHSCHDADVLALAVADNED 258 (691)
T ss_pred ceEEEEEEEe--ecCcEEEecCCceEEEEcccC-----------------------cchhhhhhhhhcceeEEEEcCCCC
Confidence 3457788877 345799999999999999988 44566788899999999998 68
Q ss_pred EEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117 252 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (346)
Q Consensus 252 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~ 321 (346)
++.+++.|+.|.-+...+.+.. .........|...|.+++..++ .+++|+.|..+.+--..
T Consensus 259 ~vfsaGvd~~ii~~~~~~~~~~-----wv~~~~r~~h~hdvrs~av~~~----~l~sgG~d~~l~i~~s~ 319 (691)
T KOG2048|consen 259 RVFSAGVDPKIIQYSLTTNKSE-----WVINSRRDLHAHDVRSMAVIEN----ALISGGRDFTLAICSSR 319 (691)
T ss_pred eEEEccCCCceEEEEecCCccc-----eeeeccccCCcccceeeeeecc----eEEecceeeEEEEcccc
Confidence 9999999999999998877531 1123334456667888877764 46677777666655443
No 165
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=8.8e-22 Score=150.11 Aligned_cols=193 Identities=17% Similarity=0.270 Sum_probs=144.1
Q ss_pred cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeee--ecc
Q 019117 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS--FVG 126 (346)
Q Consensus 50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~ 126 (346)
..+|++-+++ |++||..+++.+..++.+ ...+..+.|.-. ++.+.+.+++.||+|++||++....... +..
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~-----~~~~N~vrf~~~-ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~ 114 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGP-----PATTNGVRFISC-DSPHGVISCSSDGTVRLWDIRSQAESARISWTQ 114 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCC-----CCcccceEEecC-CCCCeeEEeccCCeEEEEEeecchhhhheeccC
Confidence 3455555555 999999999988888764 444555666532 2333799999999999999988764433 344
Q ss_pred CC-CceEEEEEeCCCCceEEEeeC----CCCEEEEecCCCee-EEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEE
Q 019117 127 HG-DSINEIRTQPLKPSLVVSASK----DESVRLWNVQTGIC-ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVK 200 (346)
Q Consensus 127 ~~-~~v~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 200 (346)
+. .+..+++.+. +.+.+++|.. +..|.+||++..+. +..+.. .|...|+++.|+|++.++|++|+.||.|.
T Consensus 115 ~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e--SH~DDVT~lrFHP~~pnlLlSGSvDGLvn 191 (376)
T KOG1188|consen 115 QSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE--SHNDDVTQLRFHPSDPNLLLSGSVDGLVN 191 (376)
T ss_pred CCCCcceEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhh--hccCcceeEEecCCCCCeEEeecccceEE
Confidence 44 5677888776 6778888753 67899999998766 666554 69999999999999999999999999999
Q ss_pred EEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecC---CEEEEEeecCeEEEEcCCCCC
Q 019117 201 IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG---DFILSKSVDNEIVLWEPKMKE 271 (346)
Q Consensus 201 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~d~~i~iwd~~~~~ 271 (346)
+||+..... ...+...-.|...|.++.|.+ +.+.+-+...+..+|+++.+.
T Consensus 192 lfD~~~d~E--------------------eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 192 LFDTKKDNE--------------------EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred eeecCCCcc--------------------hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 999987311 123334445667788888872 268888888889999887664
No 166
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=2.7e-21 Score=163.40 Aligned_cols=245 Identities=17% Similarity=0.245 Sum_probs=189.9
Q ss_pred CceEEEEEEeecCC-CccEEEEEcCCc-EEEEEeccCce-eeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeE
Q 019117 34 RPLYAVVFNFIDSR-YFNVFATVGGNR-VTVYQCLEGGV-IAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII 110 (346)
Q Consensus 34 ~~v~~~~~~p~~~~-~~~~la~~~~~~-v~i~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 110 (346)
.+|..++|.-.-.. ..+.++..-++. .+.|+..+... ...+..-.. ....+.+.+++.++-|+ +.+.|+..|.|
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~--~~~~~~~~av~vs~CGN-F~~IG~S~G~I 472 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRF--KKDDINATAVCVSFCGN-FVFIGYSKGTI 472 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccc--cccCcceEEEEEeccCc-eEEEeccCCeE
Confidence 45666666531100 113344433333 99999876543 223321111 12334445555557788 99999999999
Q ss_pred EEEEccCcceeeee---ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117 111 RVIDVSNEKLHKSF---VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI 187 (346)
Q Consensus 111 ~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 187 (346)
-+|++++|-....+ +.|.++|+.++... -++.+++++.+|.+++||......+..++ -...+.++..+. ..
T Consensus 473 d~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~----l~~~~~~iv~hr-~s 546 (910)
T KOG1539|consen 473 DRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLR----LGSSITGIVYHR-VS 546 (910)
T ss_pred EEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeec----cCCCcceeeeee-hh
Confidence 99999999988888 58999999999988 77899999999999999999888888886 667888888886 77
Q ss_pred cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEE
Q 019117 188 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLW 265 (346)
Q Consensus 188 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iw 265 (346)
.+++.+..|-.|+++|+.+ ...++.+.+|.+.|+.++|+ |++|++++.|++|++|
T Consensus 547 ~l~a~~~ddf~I~vvD~~t-----------------------~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~w 603 (910)
T KOG1539|consen 547 DLLAIALDDFSIRVVDVVT-----------------------RKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTW 603 (910)
T ss_pred hhhhhhcCceeEEEEEchh-----------------------hhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEE
Confidence 8889999999999999998 55677899999999999999 8999999999999999
Q ss_pred cCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC-CcEEEEEcCC
Q 019117 266 EPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE-GKIFVWELQS 322 (346)
Q Consensus 266 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d-g~i~iwd~~~ 322 (346)
|+.++. ++..+.. ..+..++.|||+| .+||+...| .-|++|.-.+
T Consensus 604 Dlpt~~---------lID~~~v-d~~~~sls~SPng--D~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 604 DLPTGT---------LIDGLLV-DSPCTSLSFSPNG--DFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred eccCcc---------eeeeEec-CCcceeeEECCCC--CEEEEEEecCceEEEEEchh
Confidence 999987 4444433 3578899999999 799999988 6799997544
No 167
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.89 E-value=6e-22 Score=145.91 Aligned_cols=250 Identities=15% Similarity=0.184 Sum_probs=177.6
Q ss_pred eecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (346)
Q Consensus 27 ~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 105 (346)
..|++|.+.|+++.|-. ..+|.+|..-| |.+|++.+......+..+ +...|+.+... |++ .+.+-+
T Consensus 8 fvLRp~~~~v~s~~fqa-----~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~----g~~~it~lq~~--p~d--~l~tqg 74 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQA-----NERLMSGLSVGIVKMWVLQTERDLPLIRLF----GRLFITNLQSI--PND--SLDTQG 74 (323)
T ss_pred eEeccccchheehhhcc-----chhhhcccccceEEEEEeecCccchhhhhh----ccceeeceeec--CCc--chhhcC
Confidence 34669999999999986 34588888777 999999988877666643 45556555554 554 588999
Q ss_pred cCCeEEEEEccCccee---------------------------eeec--------------------------cCCCceE
Q 019117 106 INGIIRVIDVSNEKLH---------------------------KSFV--------------------------GHGDSIN 132 (346)
Q Consensus 106 ~dg~i~iwd~~~~~~~---------------------------~~~~--------------------------~~~~~v~ 132 (346)
.|+.+.+|++.-+..+ ..+. +..+.+.
T Consensus 75 Rd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvm 154 (323)
T KOG0322|consen 75 RDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVM 154 (323)
T ss_pred CCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCcee
Confidence 9999999998542110 0000 0123445
Q ss_pred EEEEeCCCC--ceEEEeeCCCCEEEEecCCCeeEEEecc-------cCCCCcceEEEEecCCCCcEEEEEecCCeEEEEE
Q 019117 133 EIRTQPLKP--SLVVSASKDESVRLWNVQTGICILIFAG-------AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 203 (346)
Q Consensus 133 ~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 203 (346)
+..+.-..+ -++++|.++|.+.+||+.++..+..+.. ...|..+|.++.+.+ ....=++|+.+..+..|+
T Consensus 155 c~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~~S 233 (323)
T KOG0322|consen 155 CQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVMYS 233 (323)
T ss_pred eeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCccccceeee
Confidence 554332222 2567888999999999998743333221 115889999999987 555567888888999998
Q ss_pred ccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccc
Q 019117 204 MKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADI 281 (346)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 281 (346)
+......+ +.+. ........|..+... ++.++++++|++||||+.++.+ +
T Consensus 234 l~~s~gsl------------------q~~~-e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~---------p 285 (323)
T KOG0322|consen 234 LNHSTGSL------------------QIRK-EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN---------P 285 (323)
T ss_pred eccccCcc------------------cccc-eEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC---------c
Confidence 87621100 1111 112222335545444 8899999999999999999987 7
Q ss_pred cccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117 282 LQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 320 (346)
Q Consensus 282 ~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~ 320 (346)
+..++.|.+.|.+++|+|+. .++|+++.|+.|.+|++
T Consensus 286 LAVLkyHsagvn~vAfspd~--~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 286 LAVLKYHSAGVNAVAFSPDC--ELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhhhhcceeEEEeCCCC--chhhhccCCceEEeeec
Confidence 88889999999999999997 69999999999999987
No 168
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=1.6e-20 Score=146.38 Aligned_cols=289 Identities=21% Similarity=0.317 Sum_probs=191.0
Q ss_pred CCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCce------eeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV------IAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (346)
Q Consensus 32 h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 104 (346)
...+|+.+.|.++ ....+|||+.|. |++|.+..+.. +..+..+ ..|...|+++.|+ |+|. +|++|
T Consensus 12 ~~~pv~s~dfq~n---~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~L--s~H~~aVN~vRf~--p~ge-lLASg 83 (434)
T KOG1009|consen 12 DHEPVYSVDFQKN---SLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSL--SRHTRAVNVVRFS--PDGE-LLASG 83 (434)
T ss_pred CCCceEEEEeccC---cccceecccCccceeeeeeeecCCCCCceeEEEeecc--cCCcceeEEEEEc--CCcC-eeeec
Confidence 3568999999983 234999999998 99999875432 2222222 3488899999887 9999 99999
Q ss_pred ecCCeEEEEEcc--------C--------cceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEec
Q 019117 105 GINGIIRVIDVS--------N--------EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA 168 (346)
Q Consensus 105 ~~dg~i~iwd~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 168 (346)
+.+|.|.+|-.. + ....+.+.+|...|..++|+| ++.++++++-|..+++||+..|+.+..+.
T Consensus 84 ~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~ 162 (434)
T KOG1009|consen 84 GDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILD 162 (434)
T ss_pred CCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeecc
Confidence 999999999865 2 123456678999999999999 99999999999999999999999999988
Q ss_pred ccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccc----eE
Q 019117 169 GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY----VD 244 (346)
Q Consensus 169 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~ 244 (346)
.|...+..++|.| -..++++-+.|...+.+.+...+....-. ....+.......... ... -.|.+. ..
T Consensus 163 ---dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~--~~~m~~~~~~~~e~~-s~r-LfhDeTlksFFr 234 (434)
T KOG1009|consen 163 ---DHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHG--LDIMPAKAFNEREGK-STR-LFHDETLKSFFR 234 (434)
T ss_pred ---ccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeee--eeEeeecccCCCCcc-eee-eeecCchhhhhh
Confidence 7999999999999 88889999999877777665522111100 000000000000000 001 122222 23
Q ss_pred EEEec--CCEEEEEee----c-----CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecC------------
Q 019117 245 CNRWL--GDFILSKSV----D-----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF------------ 301 (346)
Q Consensus 245 ~~~~~--~~~l~~~~~----d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------------ 301 (346)
.++|. |.++++... . ++.++|+-...+ .+...+.........+.|+|--
T Consensus 235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~--------rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~ 306 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK--------RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFL 306 (434)
T ss_pred hcccCCCCcEEEcccceeeeCCceeeceeEeecccccc--------CceeecCCCCcceEEEEeeeeEEEeccccccccc
Confidence 34454 556665432 1 233444443322 1444555555566666666521
Q ss_pred ---Cc-ceEEEEcCCCcEEEEEcCCCCcceeee--eeeeEEEEEecCCCCC
Q 019117 302 ---HY-NAAAIGNREGKIFVWELQSSPPVLIAR--LICFSLHVKYNPQSVY 346 (346)
Q Consensus 302 ---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~spdg~~ 346 (346)
.+ ..+|.++ .+.|++||.++-.|..... +-..++.++||+||.+
T Consensus 307 ~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~ 356 (434)
T KOG1009|consen 307 FVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSV 356 (434)
T ss_pred cccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcE
Confidence 01 2445555 4589999999987765432 2234789999999863
No 169
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.3e-20 Score=142.69 Aligned_cols=282 Identities=13% Similarity=0.138 Sum_probs=178.4
Q ss_pred ccccCcceeeeccccccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCC-cEEEEEeccCc---eeeeE---e
Q 019117 3 RTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGN-RVTVYQCLEGG---VIAAL---Q 75 (346)
Q Consensus 3 ~~a~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~-~v~i~~~~~~~---~~~~~---~ 75 (346)
.++.+.....|.+.+-..++.+..+.- -.-+.-+.++|+|+ ...+++++-.+ .+++|...+.+ ..... .
T Consensus 103 t~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapD---c~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D 178 (420)
T KOG2096|consen 103 TISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPD---CKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHID 178 (420)
T ss_pred EEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCC---cceEEEEEccCCEEEEEEeeecccCCCCccccccc
Confidence 344455566666665444444433321 11234678999992 22344444433 39999875322 11111 1
Q ss_pred eeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEE
Q 019117 76 SYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL 155 (346)
Q Consensus 76 ~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i 155 (346)
.+. ......+..+.+-...+++ +|++++.|..|.+|+++ |+.+..+......-+..+.+| ++.++++++.---|++
T Consensus 179 ~~~-f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkV 254 (420)
T KOG2096|consen 179 NLE-FERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKV 254 (420)
T ss_pred ccc-cchhcccceEEEeecCCce-EEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceE
Confidence 000 0112233334444336677 99999999999999998 999998887777788999999 9999999999899999
Q ss_pred EecC---CC-----eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCc
Q 019117 156 WNVQ---TG-----ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK 227 (346)
Q Consensus 156 wd~~---~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 227 (346)
|.+- .| ..+..++ +|...|..++|+| +...+++.+.||++++||+.-.-.....+....
T Consensus 255 wE~~f~kdG~fqev~rvf~Lk---GH~saV~~~aFsn-~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk--------- 321 (420)
T KOG2096|consen 255 WEPIFTKDGTFQEVKRVFSLK---GHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILK--------- 321 (420)
T ss_pred EEEEeccCcchhhhhhhheec---cchhheeeeeeCC-CcceeEEEecCCcEEEeeccceEecCCCchHhh---------
Confidence 9873 22 2334455 8999999999998 899999999999999999876211100000000
Q ss_pred cceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcce
Q 019117 228 YVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNA 305 (346)
Q Consensus 228 ~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 305 (346)
....+ +......-..+..+ |+.|+. +....++++..++++. .-.-...|...|.+++|+++| ++
T Consensus 322 ~g~~p---l~aag~~p~RL~lsP~g~~lA~-s~gs~l~~~~se~g~~--------~~~~e~~h~~~Is~is~~~~g--~~ 387 (420)
T KOG2096|consen 322 EGSAP---LHAAGSEPVRLELSPSGDSLAV-SFGSDLKVFASEDGKD--------YPELEDIHSTTISSISYSSDG--KY 387 (420)
T ss_pred cCCcc---hhhcCCCceEEEeCCCCcEEEe-ecCCceEEEEcccCcc--------chhHHHhhcCceeeEEecCCC--cE
Confidence 00000 00011111134444 555554 4456799999998763 112224578899999999999 78
Q ss_pred EEEEcCCCcEEEEEc
Q 019117 306 AAIGNREGKIFVWEL 320 (346)
Q Consensus 306 l~~~~~dg~i~iwd~ 320 (346)
+++++ |..++++.-
T Consensus 388 ~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 388 IATCG-DRYVRVIRN 401 (420)
T ss_pred Eeeec-ceeeeeecC
Confidence 99887 567888763
No 170
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3.6e-21 Score=149.74 Aligned_cols=286 Identities=12% Similarity=0.130 Sum_probs=199.3
Q ss_pred eeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc---eeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117 25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG---VIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (346)
Q Consensus 25 ~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (346)
+.+.+.+|.+.|+++.|+. ++++||+|++|. +++|+....- ..+.+.. ....|...|.+++|. ..++ +
T Consensus 48 ~qKD~~~H~GCiNAlqFS~----N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~-~~~~H~SNIF~L~F~--~~N~-~ 119 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSH----NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGV-MEHPHRSNIFSLEFD--LENR-F 119 (609)
T ss_pred hhhhhhhhccccceeeecc----CCeEEeecCCcceeeeechHHHHhhcCCCCcee-ccCccccceEEEEEc--cCCe-e
Confidence 3445689999999999998 689999999998 9999976321 1122221 223366788888775 6666 9
Q ss_pred EEEeecCCeEEEEEccCcceeeeecc--CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe-eEEEecccCCCCcce
Q 019117 101 LVAGGINGIIRVIDVSNEKLHKSFVG--HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-CILIFAGAGGHRNEV 177 (346)
Q Consensus 101 l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v 177 (346)
+++|..+++|...|+.+.+.+..+.. ..+.|..+..+| ..+.|++.+.++.|.+||.+... .+..+- ........
T Consensus 120 ~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~-~AN~~~~F 197 (609)
T KOG4227|consen 120 LYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVL-PANSGKNF 197 (609)
T ss_pred EecCCCcceeEeeecccceeeeeecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceee-ecCCCccc
Confidence 99999999999999999888776652 234899999999 68899999999999999998765 332222 11356778
Q ss_pred EEEEecCCCCcEEEEEecCCeEEEEEccccceeeee---------------ceeecCCCCCCCCcccee-----------
Q 019117 178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEK---------------SFTWTDLPSKFPTKYVQF----------- 231 (346)
Q Consensus 178 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~----------- 231 (346)
..+.|+|....+|++.+..+-+.+||.+.....+.. ...|......+.......
T Consensus 198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R 277 (609)
T KOG4227|consen 198 YTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR 277 (609)
T ss_pred eeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc
Confidence 899999977899999999999999999984332211 111221111111111111
Q ss_pred -ceEEEee------cccceEEEEecC-CEEEEEeecCeEEEEcCCCCCCCCC--------------CccccccccccCCC
Q 019117 232 -PVFIASV------HSNYVDCNRWLG-DFILSKSVDNEIVLWEPKMKEQSPG--------------EGTADILQKYPVPE 289 (346)
Q Consensus 232 -~~~~~~~------~~~~i~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~--------------~~~~~~~~~~~~~~ 289 (346)
++..... ....+.+++|.+ .-+++|+.+-.|.+|.+........ .-....+..+++|.
T Consensus 278 ~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHR 357 (609)
T KOG4227|consen 278 CFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHR 357 (609)
T ss_pred ceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccc
Confidence 1111111 112356677774 4588999999999999864332111 01122355678899
Q ss_pred cCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117 290 CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (346)
Q Consensus 290 ~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~ 322 (346)
.-+..+.|+|.. .+|++.+-.+.++||.-..
T Consensus 358 Sv~NQVRF~~H~--~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 358 SVPNQVRFSQHN--NLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred ccccceeecCCc--ceEeccchhhheecccccc
Confidence 999999999998 6888999999999997554
No 171
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.88 E-value=1.1e-20 Score=146.88 Aligned_cols=207 Identities=19% Similarity=0.342 Sum_probs=157.7
Q ss_pred CCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCc-------ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCE
Q 019117 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESV 153 (346)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 153 (346)
+|...|..+.|++. +.+.||+|+.|.+|.||.+-.+ +++..+.+|...|.-++|+|.-.+.|++++.|.+|
T Consensus 79 GHt~~vLDi~w~Pf--nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPF--NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred CccccccccccCcc--CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 48889999999954 4448999999999999998543 45678889999999999999888999999999999
Q ss_pred EEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceece
Q 019117 154 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 233 (346)
Q Consensus 154 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (346)
.+||+.+++.+..+. |...|.++.|+. +|.++++.+.|..|+|||.+.. ..+
T Consensus 157 ~iWnv~tgeali~l~----hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~-----------------------~~v 208 (472)
T KOG0303|consen 157 SIWNVGTGEALITLD----HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRG-----------------------TVV 208 (472)
T ss_pred EEEeccCCceeeecC----CCCeEEEEEecc-CCceeeeecccceeEEEcCCCC-----------------------cEe
Confidence 999999999999886 999999999997 9999999999999999999983 334
Q ss_pred EEEeecccc--eEEEEec-CCEEEEEe----ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceE
Q 019117 234 FIASVHSNY--VDCNRWL-GDFILSKS----VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAA 306 (346)
Q Consensus 234 ~~~~~~~~~--i~~~~~~-~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l 306 (346)
.....|.+. ...+-.. +. +++.+ .+..+-+||....+. .-.+..+.... .|.-=-|.+|.. -+.
T Consensus 209 ~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~e------P~~~~elDtSn-Gvl~PFyD~dt~-ivY 279 (472)
T KOG0303|consen 209 SEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEE------PIALQELDTSN-GVLLPFYDPDTS-IVY 279 (472)
T ss_pred eecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccC------cceeEEeccCC-ceEEeeecCCCC-EEE
Confidence 444455543 2333333 55 44443 367899999887652 11333443333 333333566663 355
Q ss_pred EEEcCCCcEEEEEcCCCCcc
Q 019117 307 AIGNREGKIFVWELQSSPPV 326 (346)
Q Consensus 307 ~~~~~dg~i~iwd~~~~~~~ 326 (346)
++|-.|+.|+.|.+....+.
T Consensus 280 l~GKGD~~IRYyEit~d~P~ 299 (472)
T KOG0303|consen 280 LCGKGDSSIRYFEITNEPPF 299 (472)
T ss_pred EEecCCcceEEEEecCCCce
Confidence 66778999999999887653
No 172
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=1e-20 Score=156.72 Aligned_cols=257 Identities=14% Similarity=0.214 Sum_probs=195.6
Q ss_pred ceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEE
Q 019117 35 PLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVID 114 (346)
Q Consensus 35 ~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd 114 (346)
.|+.++|.| ||..|+.+.++.+.+||..+|..+.+++. |.+.|++++|+ .||+ .+++|+.|..|.+|.
T Consensus 14 ci~d~afkP----DGsqL~lAAg~rlliyD~ndG~llqtLKg-----HKDtVycVAys--~dGk-rFASG~aDK~VI~W~ 81 (1081)
T KOG1538|consen 14 CINDIAFKP----DGTQLILAAGSRLLVYDTSDGTLLQPLKG-----HKDTVYCVAYA--KDGK-RFASGSADKSVIIWT 81 (1081)
T ss_pred chheeEECC----CCceEEEecCCEEEEEeCCCccccccccc-----ccceEEEEEEc--cCCc-eeccCCCceeEEEec
Confidence 799999999 78888888899999999999999999886 88899999998 8999 999999999999998
Q ss_pred ccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe
Q 019117 115 VSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 194 (346)
Q Consensus 115 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 194 (346)
..-.- +..+ .|++.|.|+.|+| -...|++++-. ..-+|..... .+...+ ....+.+++|.. +|.+++.|-
T Consensus 82 ~klEG-~LkY-SH~D~IQCMsFNP-~~h~LasCsLs-dFglWS~~qK-~V~K~k----ss~R~~~CsWtn-DGqylalG~ 151 (1081)
T KOG1538|consen 82 SKLEG-ILKY-SHNDAIQCMSFNP-ITHQLASCSLS-DFGLWSPEQK-SVSKHK----SSSRIICCSWTN-DGQYLALGM 151 (1081)
T ss_pred ccccc-eeee-ccCCeeeEeecCc-hHHHhhhcchh-hccccChhhh-hHHhhh----hheeEEEeeecC-CCcEEEEec
Confidence 54322 2233 3999999999999 78889988763 4678887543 333333 456888999996 999999999
Q ss_pred cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-------CCEEEEEeecCeEEEEcC
Q 019117 195 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-------GDFILSKSVDNEIVLWEP 267 (346)
Q Consensus 195 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~l~~~~~d~~i~iwd~ 267 (346)
.+|+|.+=+-.... ...+....+...+|.+++|+ .+.+++..+..++.++.+
T Consensus 152 ~nGTIsiRNk~gEe---------------------k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L 210 (1081)
T KOG1538|consen 152 FNGTISIRNKNGEE---------------------KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL 210 (1081)
T ss_pred cCceEEeecCCCCc---------------------ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe
Confidence 99999886433210 11222334467789999997 248999999999999998
Q ss_pred CCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117 268 KMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~ 346 (346)
.... +..-..-.-...++.+.++| .+++.|+.|+.+++|.-+.-..-........++.++..|+|++
T Consensus 211 sG~~----------Igk~r~L~FdP~CisYf~NG--Ey~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~ 277 (1081)
T KOG1538|consen 211 SGKQ----------IGKDRALNFDPCCISYFTNG--EYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQY 277 (1081)
T ss_pred ccee----------ecccccCCCCchhheeccCC--cEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCce
Confidence 7543 22122222345678899999 6899999999999997544322223345566889999999875
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.87 E-value=1.8e-20 Score=145.73 Aligned_cols=212 Identities=16% Similarity=0.154 Sum_probs=157.2
Q ss_pred ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEe--eeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQ--SYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (346)
Q Consensus 28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 104 (346)
.+.||+++|.+++|+|. +...+|+|++|. |.||.+-.+.....+. ......|...|..+.|. |...+.|+++
T Consensus 76 ~v~GHt~~vLDi~w~Pf---nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wH--PtA~NVLlsa 150 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPF---NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWH--PTAPNVLLSA 150 (472)
T ss_pred CccCccccccccccCcc---CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeec--ccchhhHhhc
Confidence 35899999999999994 468999999999 9999987665443332 11123488899999998 6555689999
Q ss_pred ecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCc-ceEEEEec
Q 019117 105 GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN-EVLSVDFH 183 (346)
Q Consensus 105 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~ 183 (346)
+.|.+|.+|++.+++.+.++. |.+.|.++.|+- ++.+|++.+.|..|+|||.++++.+..-. +|.+ .-..+.|-
T Consensus 151 g~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~---~heG~k~~Raifl 225 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGV---AHEGAKPARAIFL 225 (472)
T ss_pred cCCceEEEEeccCCceeeecC-CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecc---cccCCCcceeEEe
Confidence 999999999999999888888 999999999999 99999999999999999999999998876 5654 23344455
Q ss_pred CCCCcEEEEE---ecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CC-EEEEEe
Q 019117 184 PSDIYRIASC---GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD-FILSKS 257 (346)
Q Consensus 184 ~~~~~~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~ 257 (346)
. ++.++-|| ..+..+-+||..+.... .....+. ..+.|.-=-|+ .. ..++|-
T Consensus 226 ~-~g~i~tTGfsr~seRq~aLwdp~nl~eP--------------------~~~~elD-tSnGvl~PFyD~dt~ivYl~GK 283 (472)
T KOG0303|consen 226 A-SGKIFTTGFSRMSERQIALWDPNNLEEP--------------------IALQELD-TSNGVLLPFYDPDTSIVYLCGK 283 (472)
T ss_pred c-cCceeeeccccccccceeccCcccccCc--------------------ceeEEec-cCCceEEeeecCCCCEEEEEec
Confidence 4 66644444 23678999999884321 1111222 12233333333 23 445666
Q ss_pred ecCeEEEEcCCCCC
Q 019117 258 VDNEIVLWEPKMKE 271 (346)
Q Consensus 258 ~d~~i~iwd~~~~~ 271 (346)
.|+.||.|.+....
T Consensus 284 GD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 284 GDSSIRYFEITNEP 297 (472)
T ss_pred CCcceEEEEecCCC
Confidence 79999999987654
No 174
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=3e-21 Score=156.42 Aligned_cols=267 Identities=16% Similarity=0.201 Sum_probs=185.3
Q ss_pred cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEecc-----CceeeeEeeeecCCCccceEEEEEEEc
Q 019117 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE-----GGVIAALQSYVDEDKEESFYTVSWACN 94 (346)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~ 94 (346)
+.|.+..++..|.+.|++++|+| ....|++++.++ +.+|++.+ ...+..+..| ..|.++|.|+++.
T Consensus 282 k~w~ik~tl~s~~d~ir~l~~~~----sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tf--raH~gPVl~v~v~-- 353 (577)
T KOG0642|consen 282 KKWNIKFTLRSHDDCIRALAFHP----SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTF--RAHEGPVLCVVVP-- 353 (577)
T ss_pred eecceeeeeecchhhhhhhhcCC----CCCeEEEeccccchhhhhhcccCCccccceeeeEEE--ecccCceEEEEec--
Confidence 34666668889999999999999 567999999999 99999932 2223333333 3588999888776
Q ss_pred CCCCcEEEEeecCCeEEEEEccCc----------ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeE
Q 019117 95 VDGIPFLVAGGINGIIRVIDVSNE----------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI 164 (346)
Q Consensus 95 ~~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 164 (346)
.++. .+++|+.||+|+.|++... .....+.||.+.|+.+++++ ....|++++.||++++|+.....+
T Consensus 354 ~n~~-~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~- 430 (577)
T KOG0642|consen 354 SNGE-HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESP- 430 (577)
T ss_pred CCce-EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCc-
Confidence 7787 9999999999999965311 23456789999999999999 788899999999999999876655
Q ss_pred EEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE
Q 019117 165 LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD 244 (346)
Q Consensus 165 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (346)
.++... ...+...++.+-.......++...-+.-.++++...+.......... ........+.
T Consensus 431 ~~f~~~-~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~----------------~~~~~~~~in 493 (577)
T KOG0642|consen 431 CTFGEP-KEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSAS----------------PGPRRYPQIN 493 (577)
T ss_pred cccCCc-cccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCC----------------CcccccCccc
Confidence 444422 12344566766531212233332223333333333111111000000 0000011122
Q ss_pred EEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117 245 CNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (346)
Q Consensus 245 ~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~ 322 (346)
-+.++ ..+.+++..|+.|+++|..+++ ++.....|...++++++.|+| .+|++++.|+.+++|.+..
T Consensus 494 ~vVs~~~~~~~~~~hed~~Ir~~dn~~~~---------~l~s~~a~~~svtslai~~ng--~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 494 KVVSHPTADITFTAHEDRSIRFFDNKTGK---------ILHSMVAHKDSVTSLAIDPNG--PYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred eEEecCCCCeeEecccCCceecccccccc---------cchheeeccceecceeecCCC--ceEEeecCCceeehhhccc
Confidence 33333 6789999999999999999987 788888899999999999999 7999999999999999876
Q ss_pred CCcc
Q 019117 323 SPPV 326 (346)
Q Consensus 323 ~~~~ 326 (346)
...+
T Consensus 563 k~~~ 566 (577)
T KOG0642|consen 563 KTCV 566 (577)
T ss_pred hhee
Confidence 5443
No 175
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.87 E-value=6.4e-21 Score=153.91 Aligned_cols=253 Identities=12% Similarity=0.196 Sum_probs=178.9
Q ss_pred cCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEe---eeecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQ---SYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (346)
Q Consensus 31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 107 (346)
.|...|.|+.|+. +...+.+++++.+.+|+-........+. .+.+.. ..+...+-.- ..+...|+.++.|
T Consensus 12 r~~e~vc~v~w~~----~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~--~h~~~rs~~~-g~~~d~~~i~s~D 84 (737)
T KOG1524|consen 12 RNSEKVCCVDWSS----NEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTD--MHLGGRSSGG-GKGSDTLLICSND 84 (737)
T ss_pred ccceeEEeecccc----cceEEEeccCceEEEeecccchhhhhhhCCcccCCcc--ccccccccCC-CCCcceEEEEcCC
Confidence 4667778999987 5677777777776666655443333222 111110 0000011000 1122378888999
Q ss_pred CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI 187 (346)
Q Consensus 108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 187 (346)
|.+.+.+ +.++..+.+..|.+.+.+-.|+| ++.-|+++++||.|++|. ++|-...++. ....+|+|++|.|+..
T Consensus 85 Gkf~il~-k~~rVE~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWS-rsGMLRStl~---Q~~~~v~c~~W~p~S~ 158 (737)
T KOG1524|consen 85 GRFVILN-KSARVERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWS-RSGMLRSTVV---QNEESIRCARWAPNSN 158 (737)
T ss_pred ceEEEec-ccchhhhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEe-ccchHHHHHh---hcCceeEEEEECCCCC
Confidence 9999988 67888888999999999999999 899999999999999998 4565555555 4678999999999556
Q ss_pred cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEE
Q 019117 188 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLW 265 (346)
Q Consensus 188 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iw 265 (346)
+.+++.+ +.+.|=.+.. +..+.....|.+-|.++.|+ .+++++|++|-..++|
T Consensus 159 ~vl~c~g--~h~~IKpL~~-----------------------n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvW 213 (737)
T KOG1524|consen 159 SIVFCQG--GHISIKPLAA-----------------------NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIW 213 (737)
T ss_pred ceEEecC--CeEEEeeccc-----------------------ccceeEEeccCcEEEEeecCccccceeecCCceeEEee
Confidence 6666554 4555544443 33566788899999999999 8899999999999999
Q ss_pred cCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCC
Q 019117 266 EPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSV 345 (346)
Q Consensus 266 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~ 345 (346)
|.... .+..-..|+.+|++++|.|+. .++.++. +.+++ ...-.+.+..++|||||.
T Consensus 214 D~~G~----------~Lf~S~~~ey~ITSva~npd~---~~~v~S~-nt~R~----------~~p~~GSifnlsWS~DGT 269 (737)
T KOG1524|consen 214 DAQGA----------NLFTSAAEEYAITSVAFNPEK---DYLLWSY-NTARF----------SSPRVGSIFNLSWSADGT 269 (737)
T ss_pred cccCc----------ccccCChhccceeeeeecccc---ceeeeee-eeeee----------cCCCccceEEEEEcCCCc
Confidence 98653 566677788999999999994 4555554 24441 112235578899999984
No 176
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=4.3e-19 Score=129.56 Aligned_cols=244 Identities=14% Similarity=0.192 Sum_probs=166.3
Q ss_pred eeecccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCce---eeeEeeeecC-----CCccceEEEEEEEcCCC
Q 019117 26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGV---IAALQSYVDE-----DKEESFYTVSWACNVDG 97 (346)
Q Consensus 26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~---~~~~~~~~~~-----~~~~~v~~~~~~~~~~~ 97 (346)
....++|.++|+.++|.- .+|++|+++.|+-|...+... .+.+-....+ ..-..|.++.+. |..
T Consensus 55 iv~eqahdgpiy~~~f~d------~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ld--P~e 126 (325)
T KOG0649|consen 55 IVPEQAHDGPIYYLAFHD------DFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLD--PSE 126 (325)
T ss_pred eeeccccCCCeeeeeeeh------hheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEec--cCC
Confidence 334589999999999984 788888886699988764332 1111111111 122345556555 555
Q ss_pred CcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccC------
Q 019117 98 IPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG------ 171 (346)
Q Consensus 98 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------ 171 (346)
+ .++.++.|+.++-||+++|+..+++++|++.|.++.--. ....+++|++||++++||.++++.+..+....
T Consensus 127 n-Si~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lR 204 (325)
T KOG0649|consen 127 N-SILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLR 204 (325)
T ss_pred C-cEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEeccccChhhcC
Confidence 5 455555799999999999999999999999999999865 66789999999999999999999988776421
Q ss_pred C-CCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecC
Q 019117 172 G-HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG 250 (346)
Q Consensus 172 ~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 250 (346)
. -...|.+++. +..++++|+ ...+.+|.++.... ..++. -+..+..+.|..
T Consensus 205 p~~g~wigala~---~edWlvCGg-Gp~lslwhLrsse~---------------------t~vfp---ipa~v~~v~F~~ 256 (325)
T KOG0649|consen 205 PDWGKWIGALAV---NEDWLVCGG-GPKLSLWHLRSSES---------------------TCVFP---IPARVHLVDFVD 256 (325)
T ss_pred cccCceeEEEec---cCceEEecC-CCceeEEeccCCCc---------------------eEEEe---cccceeEeeeec
Confidence 1 2345777775 456777665 46899999998321 12222 355677788888
Q ss_pred CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117 251 DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (346)
Q Consensus 251 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw 318 (346)
+.+++++..+.|.-|.+..-- -...+......++..|+...- +++..++..+.+.|+
T Consensus 257 d~vl~~G~g~~v~~~~l~Gvl----------~a~ip~~s~~c~s~s~~~~p~-k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 257 DCVLIGGEGNHVQSYTLNGVL----------QANIPVESTACYSASWQTSPI-KFISIAGFSNKLHIL 313 (325)
T ss_pred ceEEEeccccceeeeeeccEE----------EEeccCCccceeeecccCCce-EEEEecccceeeeee
Confidence 999999999999999886521 111222222333444443332 466666777777765
No 177
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.87 E-value=8.3e-19 Score=135.44 Aligned_cols=238 Identities=12% Similarity=0.160 Sum_probs=181.8
Q ss_pred CCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC--CeE
Q 019117 33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN--GII 110 (346)
Q Consensus 33 ~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d--g~i 110 (346)
...+..+.|+. +...|..|+.+|-++|+...-... + ....+.+..+...|+.. ++|..+.+ ..+
T Consensus 5 ~~ti~~~~~Nq----d~~~lsvGs~~Gyk~~~~~~~~k~-----~--~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~L 70 (391)
T KOG2110|consen 5 KPTINFIGFNQ----DSTLLSVGSKDGYKIFSCSPFEKC-----F--SKDTEGVSIVEMLFSSS---LVAIVSIKQPRKL 70 (391)
T ss_pred Ccceeeeeecc----ceeEEEccCCCceeEEecCchHHh-----h--cccCCCeEEEEeecccc---eeEEEecCCCceE
Confidence 34566777887 778999999999999997654441 1 11334555566666533 66666554 459
Q ss_pred EEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEE
Q 019117 111 RVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI 190 (346)
Q Consensus 111 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 190 (346)
++++++.+..+..+. ...+|.+|.++. +.|+++-++ .|.|||+++.+.+.++.....+...+.++++++ ++.++
T Consensus 71 kv~~~Kk~~~ICe~~-fpt~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~yl 144 (391)
T KOG2110|consen 71 KVVHFKKKTTICEIF-FPTSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYL 144 (391)
T ss_pred EEEEcccCceEEEEe-cCCceEEEEEcc---ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCC-CCceE
Confidence 999999888887776 567899999975 566666654 499999999999999986545666677777775 55566
Q ss_pred EEE--ecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCe-EEEE
Q 019117 191 ASC--GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNE-IVLW 265 (346)
Q Consensus 191 ~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~-i~iw 265 (346)
+-- ...|.|.+||+.+ -.++..+..|.+.+.+++|+ |.+||+++..|+ |||+
T Consensus 145 Ayp~s~t~GdV~l~d~~n-----------------------l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf 201 (391)
T KOG2110|consen 145 AYPGSTTSGDVVLFDTIN-----------------------LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVF 201 (391)
T ss_pred EecCCCCCceEEEEEccc-----------------------ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEE
Confidence 543 3368899999998 45678889999999999999 999999999887 7999
Q ss_pred cCCCCCCCCCCccccccccccCC--CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 266 EPKMKEQSPGEGTADILQKYPVP--ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 266 d~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
.+.+++ .+.++... ...|.+++|+||+ .+|++.|..++|++|.++.-.
T Consensus 202 ~v~~G~---------kl~eFRRG~~~~~IySL~Fs~ds--~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 202 SVPEGQ---------KLYEFRRGTYPVSIYSLSFSPDS--QFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EcCCcc---------EeeeeeCCceeeEEEEEEECCCC--CeEEEecCCCeEEEEEecccc
Confidence 998887 44444432 3578999999999 699999999999999997643
No 178
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.7e-20 Score=143.12 Aligned_cols=199 Identities=20% Similarity=0.254 Sum_probs=157.4
Q ss_pred EEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCC-CCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceE
Q 019117 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL-KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 178 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 178 (346)
.+|++..+|.|++||..+++.+..++++...++.++|... .+..+.+++.||+|++||++.......+...+....+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 7888889999999999999999999999999999999874 567899999999999999998776665553222235677
Q ss_pred EEEecCCCCcEEEEEec----CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CC
Q 019117 179 SVDFHPSDIYRIASCGM----DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GD 251 (346)
Q Consensus 179 ~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~ 251 (346)
+++..- .+..+++|+. +-.|.+||+|..+.. .-.-...|.+.|+++.|+ ++
T Consensus 122 ~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~---------------------l~~~~eSH~DDVT~lrFHP~~pn 179 (376)
T KOG1188|consen 122 CLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQL---------------------LRQLNESHNDDVTQLRFHPSDPN 179 (376)
T ss_pred EeeccC-cCCeEEeccccccCceEEEEEEeccccch---------------------hhhhhhhccCcceeEEecCCCCC
Confidence 777764 6677777743 568999999983310 112345799999999998 78
Q ss_pred EEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce
Q 019117 252 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL 327 (346)
Q Consensus 252 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 327 (346)
+|++|+.||.|.+||++... ....+...-.+...|..+.|..++. +.+.+-+..+...+|+++.+....
T Consensus 180 lLlSGSvDGLvnlfD~~~d~------EeDaL~~viN~~sSI~~igw~~~~y-krI~clTH~Etf~~~ele~~~~~~ 248 (376)
T KOG1188|consen 180 LLLSGSVDGLVNLFDTKKDN------EEDALLHVINHGSSIHLIGWLSKKY-KRIMCLTHMETFAIYELEDGSEET 248 (376)
T ss_pred eEEeecccceEEeeecCCCc------chhhHHHhhcccceeeeeeeecCCc-ceEEEEEccCceeEEEccCCChhh
Confidence 99999999999999998763 2224444445677899999998875 568888889999999999987443
No 179
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.8e-19 Score=131.59 Aligned_cols=219 Identities=15% Similarity=0.093 Sum_probs=159.0
Q ss_pred EEEEEcCCCCcEEEEeecCCeEEEEEccCc----------ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEec
Q 019117 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNE----------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158 (346)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~ 158 (346)
-+++ |.++ +|++|+.+|.|.+..+++. ..+...++|.++|+.++|.. .+|++|+. |.|+-|..
T Consensus 16 qa~s--p~~~-~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~gd-G~V~gw~W 88 (325)
T KOG0649|consen 16 QAIS--PSKQ-YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGGD-GLVYGWEW 88 (325)
T ss_pred HhhC--Ccce-EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeeccC-ceEEEeee
Confidence 4455 8888 9999999999999988541 23455688999999999974 67888774 99999987
Q ss_pred CCCee------EEEecccC----CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCcc
Q 019117 159 QTGIC------ILIFAGAG----GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY 228 (346)
Q Consensus 159 ~~~~~------~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (346)
+.... +...+.+. ..-..|+++...| ..+-++.++.|+.++.||+++
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~AgGD~~~y~~dlE~---------------------- 145 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFAGGDGVIYQVDLED---------------------- 145 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEecCCeEEEEEEecC----------------------
Confidence 64322 11211110 1224689999999 445566666899999999999
Q ss_pred ceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCC-cCeeEEEEeecCCcce
Q 019117 229 VQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE-CDIWFIKFSCDFHYNA 305 (346)
Q Consensus 229 ~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~ 305 (346)
+...+.+.+|++.|.++.-. ...+++|++||++|+||.++.+.....+..+....+..|. ..|.+++-+. .+
T Consensus 146 -G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e----dW 220 (325)
T KOG0649|consen 146 -GRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE----DW 220 (325)
T ss_pred -CEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC----ce
Confidence 44567899999999999884 6689999999999999999998543333222222222222 3455555443 46
Q ss_pred EEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCC
Q 019117 306 AAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQ 343 (346)
Q Consensus 306 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spd 343 (346)
|++|+. ..+.+|++...++..++.+++++..+.|--|
T Consensus 221 lvCGgG-p~lslwhLrsse~t~vfpipa~v~~v~F~~d 257 (325)
T KOG0649|consen 221 LVCGGG-PKLSLWHLRSSESTCVFPIPARVHLVDFVDD 257 (325)
T ss_pred EEecCC-CceeEEeccCCCceEEEecccceeEeeeecc
Confidence 877664 5799999999999999999998887777544
No 180
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1.7e-19 Score=156.63 Aligned_cols=273 Identities=14% Similarity=0.158 Sum_probs=190.2
Q ss_pred cCCCceEEEEEEeecCCCccEEEEEc-CCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCe
Q 019117 31 EGKRPLYAVVFNFIDSRYFNVFATVG-GNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI 109 (346)
Q Consensus 31 ~h~~~v~~~~~~p~~~~~~~~la~~~-~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 109 (346)
+...+-..+.|+| ....++++. .+.|.+||...++.+..+.... .....|..+.+.-..|.. ++++|+.||.
T Consensus 1062 ~n~~~pk~~~~hp----f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~--~~~t~Vs~l~liNe~D~a-LlLtas~dGv 1134 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHP----FEPQIAAADDRERIRVWDWEKGRLLNGFDNGA--FPDTRVSDLELINEQDDA-LLLTASSDGV 1134 (1387)
T ss_pred cCCCCCceeeecC----CCceeEEcCCcceEEEEecccCceeccccCCC--CCCCccceeeeecccchh-heeeeccCce
Confidence 3334566788998 556777776 4449999999988866655432 255778888887555666 9999999999
Q ss_pred EEEEEcc-----Ccceeeeecc-------CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcce
Q 019117 110 IRVIDVS-----NEKLHKSFVG-------HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV 177 (346)
Q Consensus 110 i~iwd~~-----~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 177 (346)
|+||+-- +.+.+....+ ..+.-.-+.|.. ...+|+++++-..|+|||....+.+..+.. +....|
T Consensus 1135 IRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ-~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~--~s~t~v 1211 (1387)
T KOG1517|consen 1135 IRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQ-QSGHLLVTGDVRSIRIWDAHKEQVVADIPY--GSSTLV 1211 (1387)
T ss_pred EEEecccccccCCceeEEeeccccccCccCCCCCeeeehhh-hCCeEEecCCeeEEEEEecccceeEeeccc--CCCccc
Confidence 9999742 2233322221 122224567877 445566666678999999998877777653 456678
Q ss_pred EEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccc--eEEEEec--CC-E
Q 019117 178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY--VDCNRWL--GD-F 252 (346)
Q Consensus 178 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~--~~-~ 252 (346)
+++.-+-..++.++.|..||.|++||.+.... ...+.....|++. |..+.+. |- .
T Consensus 1212 TaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~--------------------ds~v~~~R~h~~~~~Iv~~slq~~G~~e 1271 (1387)
T KOG1517|consen 1212 TALSADLVHGNIIAAGFADGSVRVYDRRMAPP--------------------DSLVCVYREHNDVEPIVHLSLQRQGLGE 1271 (1387)
T ss_pred eeecccccCCceEEEeecCCceEEeecccCCc--------------------cccceeecccCCcccceeEEeecCCCcc
Confidence 88877655689999999999999999998321 2345566778777 8888887 32 5
Q ss_pred EEEEeecCeEEEEcCCCCCCCCCCccccccccccCCC--c-CeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee
Q 019117 253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE--C-DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA 329 (346)
Q Consensus 253 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~-~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 329 (346)
|++|+.||.|++||++..... .......|. + ..+++..+++. .++|+|+. +.|+||++.....-...
T Consensus 1272 lvSgs~~G~I~~~DlR~~~~e-------~~~~iv~~~~yGs~lTal~VH~ha--piiAsGs~-q~ikIy~~~G~~l~~~k 1341 (1387)
T KOG1517|consen 1272 LVSGSQDGDIQLLDLRMSSKE-------TFLTIVAHWEYGSALTALTVHEHA--PIIASGSA-QLIKIYSLSGEQLNIIK 1341 (1387)
T ss_pred eeeeccCCeEEEEecccCccc-------ccceeeeccccCccceeeeeccCC--CeeeecCc-ceEEEEecChhhhcccc
Confidence 999999999999999984210 111111121 3 58999999988 78999998 99999999765432222
Q ss_pred e-------eeeeEEEEEecCC
Q 019117 330 R-------LICFSLHVKYNPQ 343 (346)
Q Consensus 330 ~-------~~~~~~~~~~spd 343 (346)
. -.+.+.+++|+|-
T Consensus 1342 ~n~~F~~q~~gs~scL~FHP~ 1362 (1387)
T KOG1517|consen 1342 YNPGFMGQRIGSVSCLAFHPH 1362 (1387)
T ss_pred cCcccccCcCCCcceeeecch
Confidence 1 2234678999884
No 181
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.86 E-value=4.6e-18 Score=146.38 Aligned_cols=265 Identities=23% Similarity=0.406 Sum_probs=199.9
Q ss_pred ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc-eeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe-
Q 019117 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG-VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG- 104 (346)
Q Consensus 28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~- 104 (346)
.+..|...+.++.|.+ .+..++.++.++ +.+|+..... ....+... +...+..+.+. .+++..+++..
T Consensus 60 ~~~~~~~~i~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~ 130 (466)
T COG2319 60 LLRGHEDSITSIAFSP----DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGL----HDSSVSKLALS-SPDGNSILLASS 130 (466)
T ss_pred eeeeccceEEEEEECC----CCcEEEEecCCCcEEEEEcCCCceeEEEEecc----CCCceeeEEEE-CCCcceEEeccC
Confidence 4578999999999998 678888888666 9999988776 44444432 11356666665 67776344443
Q ss_pred ecCCeEEEEEccC-cceeeeeccCCCceEEEEEeCCCCceEEEeeC-CCCEEEEecCCCeeEEEecccCCCCcceEEEEe
Q 019117 105 GINGIIRVIDVSN-EKLHKSFVGHGDSINEIRTQPLKPSLVVSASK-DESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 182 (346)
Q Consensus 105 ~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 182 (346)
..|+.+.+|+... ......+..|...|..++|+| ++..+++++. |+.+++|++..+..+..+. +|...|.+++|
T Consensus 131 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~ 206 (466)
T COG2319 131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKPLSTLA---GHTDPVSSLAF 206 (466)
T ss_pred CCCccEEEEEecCCCeEEEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCceEEeec---cCCCceEEEEE
Confidence 4499999999988 778888899999999999999 7778888885 9999999999888888888 69999999999
Q ss_pred cCCCCc-EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceE-EEeecccceEEEEec--CCEEEEEee
Q 019117 183 HPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF-IASVHSNYVDCNRWL--GDFILSKSV 258 (346)
Q Consensus 183 ~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~--~~~l~~~~~ 258 (346)
+| ++. .+++++.|+.|++||.... .... .+..|.... ...|+ +.++++++.
T Consensus 207 ~~-~~~~~~~~~~~d~~i~~wd~~~~-----------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 261 (466)
T COG2319 207 SP-DGGLLIASGSSDGTIRLWDLSTG-----------------------KLLRSTLSGHSDSV-VSSFSPDGSLLASGSS 261 (466)
T ss_pred cC-CcceEEEEecCCCcEEEEECCCC-----------------------cEEeeecCCCCcce-eEeECCCCCEEEEecC
Confidence 98 665 5666699999999977741 2222 455666653 22455 668889999
Q ss_pred cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee---eeeeE
Q 019117 259 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR---LICFS 335 (346)
Q Consensus 259 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~ 335 (346)
|+.+++|+...... .+..+..|...+.++.|.|++ ..+++++.|+.+.+|++.+........ ....+
T Consensus 262 d~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (466)
T COG2319 262 DGTIRLWDLRSSSS--------LLRTLSGHSSSVLSVAFSPDG--KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPV 331 (466)
T ss_pred CCcEEEeeecCCCc--------EEEEEecCCccEEEEEECCCC--CEEEEeeCCCcEEEEEcCCCceEEEeeecccCCce
Confidence 99999999987652 122225667899999999977 567778888999999988876544433 22235
Q ss_pred EEEEe
Q 019117 336 LHVKY 340 (346)
Q Consensus 336 ~~~~~ 340 (346)
..+.|
T Consensus 332 ~~~~~ 336 (466)
T COG2319 332 SSLSF 336 (466)
T ss_pred EEEEE
Confidence 66777
No 182
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.3e-20 Score=152.50 Aligned_cols=178 Identities=17% Similarity=0.302 Sum_probs=145.4
Q ss_pred ccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117 20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI 98 (346)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (346)
.+.+.+.+.|.||++.|+|++|+. +|.+|++|++|. +.|||...-+.+..+.. .|...|.++.|.+..+++
T Consensus 37 lrrL~lE~eL~GH~GCVN~LeWn~----dG~lL~SGSDD~r~ivWd~~~~KllhsI~T----gHtaNIFsvKFvP~tnnr 108 (758)
T KOG1310|consen 37 LRRLDLEAELTGHTGCVNCLEWNA----DGELLASGSDDTRLIVWDPFEYKLLHSIST----GHTANIFSVKFVPYTNNR 108 (758)
T ss_pred HhhcchhhhhccccceecceeecC----CCCEEeecCCcceEEeecchhcceeeeeec----ccccceeEEeeeccCCCe
Confidence 355677788999999999999998 899999999998 99999987777777664 588999999999766677
Q ss_pred cEEEEeecCCeEEEEEccC----------cceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee-----
Q 019117 99 PFLVAGGINGIIRVIDVSN----------EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC----- 163 (346)
Q Consensus 99 ~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----- 163 (346)
++++|..|..|+++|+.. .+....+..|...|..++-.|.+++.+.++++||+|+-+|++....
T Consensus 109 -iv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~ 187 (758)
T KOG1310|consen 109 -IVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDE 187 (758)
T ss_pred -EEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccc
Confidence 999999999999999974 2345566779999999999997779999999999999999985321
Q ss_pred --EEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117 164 --ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (346)
Q Consensus 164 --~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 206 (346)
...+......--...++..+|.+..+|+.|+.|-..++||.+.
T Consensus 188 ~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr 232 (758)
T KOG1310|consen 188 DCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRR 232 (758)
T ss_pred cccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence 1111110012245679999998899999999999999999766
No 183
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=4e-19 Score=138.71 Aligned_cols=260 Identities=16% Similarity=0.168 Sum_probs=180.4
Q ss_pred ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEec--------c-----CceeeeEeeeecCCCccceE
Q 019117 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCL--------E-----GGVIAALQSYVDEDKEESFY 87 (346)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~--------~-----~~~~~~~~~~~~~~~~~~v~ 87 (346)
..+.+..|..|...|+++.|+| +|++||+|++++ |.+|-.. + .+....... ...|.+.++
T Consensus 54 ~V~y~s~Ls~H~~aVN~vRf~p----~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~--lr~h~~diy 127 (434)
T KOG1009|consen 54 KVEYLSSLSRHTRAVNVVRFSP----DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKV--LRGHRDDIY 127 (434)
T ss_pred eEEEeecccCCcceeEEEEEcC----CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEE--ecccccchh
Confidence 5677788899999999999999 899999999999 9999765 1 111111111 123788999
Q ss_pred EEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEe
Q 019117 88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF 167 (346)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 167 (346)
.++|+ |++. ++++++.|..+++||+..|+....+..|...|..++|.| -.+++++-+.|...+.+.+...+.+...
T Consensus 128 dL~Ws--~d~~-~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~ 203 (434)
T KOG1009|consen 128 DLAWS--PDSN-FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRH 203 (434)
T ss_pred hhhcc--CCCc-eeeeeeccceEEEEEeccceeEeeccccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeee
Confidence 99998 8898 999999999999999999999999999999999999999 8899999999988777777644433322
Q ss_pred cc-----cCC-----------C----CcceEEEEecCCCCcEEEEEec----CCeE-----EEEEccccceeeeeceeec
Q 019117 168 AG-----AGG-----------H----RNEVLSVDFHPSDIYRIASCGM----DNTV-----KIWSMKEFWTYVEKSFTWT 218 (346)
Q Consensus 168 ~~-----~~~-----------~----~~~v~~~~~~~~~~~~l~s~~~----d~~i-----~iwd~~~~~~~~~~~~~~~ 218 (346)
.. ... | ..-.+.++|+| ++.++++... ++.+ ++|+-..
T Consensus 204 ~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTP-dG~llvtPag~~~~g~~~~~n~tYvfsrk~------------ 270 (434)
T KOG1009|consen 204 GLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTP-DGSLLVTPAGLFKVGGGVFRNTSYVFSRKD------------ 270 (434)
T ss_pred eeeEeeecccCCCCcceeeeeecCchhhhhhhcccCC-CCcEEEcccceeeeCCceeeceeEeecccc------------
Confidence 20 000 1 12245678898 8888887642 1222 2222111
Q ss_pred CCCCCCCCccceeceEEEeecccceEEEEe-----------------c---CCEEEEEeecCeEEEEcCCCCCCCCCCcc
Q 019117 219 DLPSKFPTKYVQFPVFIASVHSNYVDCNRW-----------------L---GDFILSKSVDNEIVLWEPKMKEQSPGEGT 278 (346)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----------------~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 278 (346)
...|...+..-......+.+ . +..++.++. +.|.+||.++..+
T Consensus 271 ----------l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P------ 333 (434)
T KOG1009|consen 271 ----------LKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEP------ 333 (434)
T ss_pred ----------ccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEeccccccc------
Confidence 11222222222222222211 1 334555554 5799999988662
Q ss_pred ccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCc
Q 019117 279 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP 325 (346)
Q Consensus 279 ~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~ 325 (346)
....-..|-..|+.++|++|| .+|+..|.||...+-.++..++
T Consensus 334 --~~~v~nihy~~iTDiaws~dg--~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 334 --LAVVDNIHYSAITDIAWSDDG--SVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred --eEEEeeeeeeeecceeecCCC--cEEEEeccCCceEEEEEcchhc
Confidence 122223367799999999999 7999999999998888887664
No 184
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=9.3e-20 Score=151.12 Aligned_cols=248 Identities=14% Similarity=0.170 Sum_probs=185.3
Q ss_pred cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (346)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (346)
....+.++|++|++.|+|++|+. +|++||+|+.|. |.+|+..-...+ + ..|++.|.|+.|. |-..
T Consensus 41 ndG~llqtLKgHKDtVycVAys~----dGkrFASG~aDK~VI~W~~klEG~L---k----YSH~D~IQCMsFN--P~~h- 106 (1081)
T KOG1538|consen 41 SDGTLLQPLKGHKDTVYCVAYAK----DGKRFASGSADKSVIIWTSKLEGIL---K----YSHNDAIQCMSFN--PITH- 106 (1081)
T ss_pred CCcccccccccccceEEEEEEcc----CCceeccCCCceeEEEeccccccee---e----eccCCeeeEeecC--chHH-
Confidence 34567788999999999999998 899999999999 888985433322 2 2388999888776 7666
Q ss_pred EEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEE
Q 019117 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS 179 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 179 (346)
.|++++-+ ..-+|..+... +...+ ....+.+++|.. ++++|+.|-.+|+|.+-+- +++....+..+++..++|.+
T Consensus 107 ~LasCsLs-dFglWS~~qK~-V~K~k-ss~R~~~CsWtn-DGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiws 181 (1081)
T KOG1538|consen 107 QLASCSLS-DFGLWSPEQKS-VSKHK-SSSRIICCSWTN-DGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWS 181 (1081)
T ss_pred Hhhhcchh-hccccChhhhh-HHhhh-hheeEEEeeecC-CCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceE
Confidence 88888754 46788865433 22222 345788999998 9999999999999999864 56666677767788999999
Q ss_pred EEecCCCC----cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEE
Q 019117 180 VDFHPSDI----YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI 253 (346)
Q Consensus 180 ~~~~~~~~----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l 253 (346)
++|+|..+ ..++......++.+|.+....... ...+ .-.-.|+.+. |.++
T Consensus 182 i~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk---------------------~r~L---~FdP~CisYf~NGEy~ 237 (1081)
T KOG1538|consen 182 ICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGK---------------------DRAL---NFDPCCISYFTNGEYI 237 (1081)
T ss_pred EEecCCCCCCccceEEEEeccceeEEEEecceeecc---------------------cccC---CCCchhheeccCCcEE
Confidence 99999433 567777777788888776511100 0111 1122355554 9999
Q ss_pred EEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117 254 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (346)
Q Consensus 254 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (346)
+.|+.|+.+++|--+.- .+.+......+|+.++..|++ ..++.|+.||+|..|++...
T Consensus 238 LiGGsdk~L~~fTR~Gv----------rLGTvg~~D~WIWtV~~~PNs--Q~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 238 LLGGSDKQLSLFTRDGV----------RLGTVGEQDSWIWTVQAKPNS--QYVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred EEccCCCceEEEeecCe----------EEeeccccceeEEEEEEccCC--ceEEEEEccCeeehhhhHHh
Confidence 99999999999975532 345555567799999999999 68999999999999998654
No 185
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.84 E-value=9e-19 Score=148.48 Aligned_cols=252 Identities=15% Similarity=0.130 Sum_probs=177.1
Q ss_pred EEEEEeccCcee-eeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcce--ee----eeccCCCceE
Q 019117 60 VTVYQCLEGGVI-AALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL--HK----SFVGHGDSIN 132 (346)
Q Consensus 60 v~i~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~----~~~~~~~~v~ 132 (346)
+.+|++...... ..+. ....|.++.|+ |...++++.|..+|.|.+||+..+.. .. ....|..+++
T Consensus 224 ~~vW~~~~p~~Pe~~~~------~~s~v~~~~f~--p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~ 295 (555)
T KOG1587|consen 224 LLVWSLKNPNTPELVLE------SPSEVTCLKFC--PFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVT 295 (555)
T ss_pred EEEEecCCCCCceEEEe------cCCceeEEEec--cCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeE
Confidence 889998765222 2222 45677777777 66665999999999999999987654 22 2245899999
Q ss_pred EEEEeCCCCce--EEEeeCCCCEEEEecCCCeeEE---Eeccc------CCCCcceEEEEecCCCCcEEEEEecCCeEEE
Q 019117 133 EIRTQPLKPSL--VVSASKDESVRLWNVQTGICIL---IFAGA------GGHRNEVLSVDFHPSDIYRIASCGMDNTVKI 201 (346)
Q Consensus 133 ~~~~~~~~~~~--l~s~~~d~~i~iwd~~~~~~~~---~~~~~------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i 201 (346)
.+.|.. +..- |++++.||.|+.|+++.-.... ..... ......+++++|.+.+...++.|+.+|.|.-
T Consensus 296 ~vvW~~-~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~ 374 (555)
T KOG1587|consen 296 AVVWLQ-NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYK 374 (555)
T ss_pred EEEEec-cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEE
Confidence 999987 4444 9999999999999887432211 11100 0123468899999988899999999999887
Q ss_pred EEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCcc
Q 019117 202 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGT 278 (346)
Q Consensus 202 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 278 (346)
-+-........ ...........|.+.|.++.++ ...+++++ |.+++||......
T Consensus 375 ~~r~g~~~~~~---------------~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~------- 431 (555)
T KOG1587|consen 375 GCRKGYTPAPE---------------VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIA------- 431 (555)
T ss_pred EeccCCccccc---------------ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCC-------
Confidence 44433221111 1122344667799999999998 45566666 9999999988332
Q ss_pred ccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCc--ceeeeeee-eEEEEEecCCCC
Q 019117 279 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP--VLIARLIC-FSLHVKYNPQSV 345 (346)
Q Consensus 279 ~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~-~~~~~~~spdg~ 345 (346)
.++..+..+...+++++|||-.. .+++++..||.|.+||+..... +....... ..+.+.|+++|+
T Consensus 432 -~Pl~~~~~~~~~v~~vaWSptrp-avF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~ 499 (555)
T KOG1587|consen 432 -SPLLSLDSSPDYVTDVAWSPTRP-AVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGK 499 (555)
T ss_pred -CcchhhhhccceeeeeEEcCcCc-eEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCc
Confidence 15666666677799999999876 6999999999999999987553 33333333 245688888876
No 186
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.9e-20 Score=148.35 Aligned_cols=284 Identities=15% Similarity=0.244 Sum_probs=212.3
Q ss_pred cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (346)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (346)
+.+.+...|..|.+.|..|.|+. .|..|+++++|. |.+||+..+.....+.. .|...|..-.|.+..+..
T Consensus 130 qr~~l~~kL~~H~GcVntV~FN~----~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S----GH~~NvfQaKFiP~s~d~- 200 (559)
T KOG1334|consen 130 QRLRLQKKLNKHKGCVNTVHFNQ----RGDVLASGSDDLQVVVWDWVSGSPKLSFES----GHCNNVFQAKFIPFSGDR- 200 (559)
T ss_pred HHhhhhhcccCCCCccceeeecc----cCceeeccCccceEEeehhhccCccccccc----ccccchhhhhccCCCCCc-
Confidence 46677888999999999999998 899999999999 99999998887665553 477777777777554555
Q ss_pred EEEEeecCCeEEEEEccCcc-e--eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCc-
Q 019117 100 FLVAGGINGIIRVIDVSNEK-L--HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN- 175 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~-~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~- 175 (346)
-+++++.||.+++=.+.... + ...+..|.++|..++.-|....-|.+++.|+.+.-+|++.+.+...+.....+..
T Consensus 201 ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~ 280 (559)
T KOG1334|consen 201 TIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKE 280 (559)
T ss_pred CceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcc
Confidence 79999999999988764332 2 3455669999999999998889999999999999999998766555543333444
Q ss_pred --ceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeec--------------------eeecCCCCC----------
Q 019117 176 --EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKS--------------------FTWTDLPSK---------- 223 (346)
Q Consensus 176 --~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------------------~~~~~~~~~---------- 223 (346)
....++.+|.+.+.+++++.|..+++||.+......... ..+...++.
T Consensus 281 ~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~I 360 (559)
T KOG1334|consen 281 RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDI 360 (559)
T ss_pred ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccce
Confidence 568899999778899999999999999998844431110 000000000
Q ss_pred -------------CCCccc-eeceEEEeeccc--ceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCcccccccc
Q 019117 224 -------------FPTKYV-QFPVFIASVHSN--YVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQK 284 (346)
Q Consensus 224 -------------~~~~~~-~~~~~~~~~~~~--~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 284 (346)
.+.... +.....+++|.+ .|..+.|- .+++++|+.-|.|.||+-.+++ .++-
T Consensus 361 YLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e---------ii~~ 431 (559)
T KOG1334|consen 361 YLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE---------IIRF 431 (559)
T ss_pred EEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhH---------HHHH
Confidence 000000 011112555654 47777777 4799999999999999999887 6777
Q ss_pred ccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 285 YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 285 ~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
+.+...-|.||.-+|.- .+||+++-|..|+||.-.+.+
T Consensus 432 MegDr~VVNCLEpHP~~--PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 432 MEGDRHVVNCLEPHPHL--PVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred hhcccceEeccCCCCCC--chhhccCCccceeeecCCccc
Confidence 77777789999988887 799999999999999875544
No 187
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.83 E-value=2e-20 Score=148.33 Aligned_cols=249 Identities=14% Similarity=0.173 Sum_probs=197.3
Q ss_pred eEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEE
Q 019117 36 LYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVID 114 (346)
Q Consensus 36 v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd 114 (346)
-+.+.++. +|..++.|+..| +-.+|..+......+. -.+.|..+.|. .+.. ++|++- ...+.|||
T Consensus 132 PY~~~ytr----nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~------v~Etv~Dv~~L--Hneq-~~AVAQ-K~y~yvYD 197 (545)
T KOG1272|consen 132 PYHLDYTR----NGRHLLLGGRKGHLAAFDWVTKKLHFEIN------VMETVRDVTFL--HNEQ-FFAVAQ-KKYVYVYD 197 (545)
T ss_pred CeeeeecC----CccEEEecCCccceeeeecccceeeeeee------hhhhhhhhhhh--cchH-HHHhhh-hceEEEec
Confidence 45677776 788888888877 9999999998877776 45678888887 4454 676665 67899999
Q ss_pred ccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe
Q 019117 115 VSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 194 (346)
Q Consensus 115 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 194 (346)
..|..+.-++.| ..|..+.|.| ..-+|++++..|.++.-|+.+|+.+..+. .-.+.+..++-+| -...+-+|.
T Consensus 198 -~~GtElHClk~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~---t~~G~~~vm~qNP-~NaVih~Gh 270 (545)
T KOG1272|consen 198 -NNGTELHCLKRH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIR---TGAGRTDVMKQNP-YNAVIHLGH 270 (545)
T ss_pred -CCCcEEeehhhc-Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHH---ccCCccchhhcCC-ccceEEEcC
Confidence 667777777755 5689999999 88899999999999999999999999998 4678888999999 777899999
Q ss_pred cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCC
Q 019117 195 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQ 272 (346)
Q Consensus 195 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~ 272 (346)
..|+|.+|.... ..++..+..|.+.|.+++++ |+|++|.+.|..++|||++...
T Consensus 271 snGtVSlWSP~s-----------------------kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~- 326 (545)
T KOG1272|consen 271 SNGTVSLWSPNS-----------------------KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY- 326 (545)
T ss_pred CCceEEecCCCC-----------------------cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc-
Confidence 999999999988 66888899999999999998 9999999999999999999865
Q ss_pred CCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE-cCCCC-----cceeeeeeeeEEEEEecC
Q 019117 273 SPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE-LQSSP-----PVLIARLICFSLHVKYNP 342 (346)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd-~~~~~-----~~~~~~~~~~~~~~~~sp 342 (346)
.+.++.. ..+...++||.-| +++.+....+.||. .-.+. +.....+.+.|..+.|-|
T Consensus 327 --------ql~t~~t-p~~a~~ls~Sqkg----lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP 389 (545)
T KOG1272|consen 327 --------QLHTYRT-PHPASNLSLSQKG----LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCP 389 (545)
T ss_pred --------ccceeec-CCCcccccccccc----ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceecc
Confidence 2333333 2356678888776 44445556799994 33322 333445556677777776
No 188
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=9.7e-19 Score=143.11 Aligned_cols=249 Identities=17% Similarity=0.210 Sum_probs=167.0
Q ss_pred cCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEec
Q 019117 79 DEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158 (346)
Q Consensus 79 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~ 158 (346)
...|.+.|.+++.. |.|. +|++|+.||+|+||.+.++++++++. -.+.|.||+|+|.....+++......+.|-+.
T Consensus 396 yrGHtg~Vr~iSvd--p~G~-wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 396 YRGHTGLVRSISVD--PSGE-WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred EeccCCeEEEEEec--CCcc-eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 34588888888777 7788 99999999999999999999999887 56789999999954444444444444555443
Q ss_pred CCCee--------------------------------------EEEecccCCCCcceEEEEecCCCCcEEEEEecC---C
Q 019117 159 QTGIC--------------------------------------ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD---N 197 (346)
Q Consensus 159 ~~~~~--------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~ 197 (346)
.-|.. ...+ .|...|+.+.||. .|.+|++...+ .
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I----~~~k~i~~vtWHr-kGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI----KHPKSIRQVTWHR-KGDYLATVMPDSGNK 546 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE----ecCCccceeeeec-CCceEEEeccCCCcc
Confidence 32200 0112 3788899999997 88999887554 4
Q ss_pred eEEEEEccccceeeeece--e----ecCCCCC--CCCcc-c---------eeceEEEeecccceEEEEec--CCEEEEEe
Q 019117 198 TVKIWSMKEFWTYVEKSF--T----WTDLPSK--FPTKY-V---------QFPVFIASVHSNYVDCNRWL--GDFILSKS 257 (346)
Q Consensus 198 ~i~iwd~~~~~~~~~~~~--~----~~~~~~~--~~~~~-~---------~~~~~~~~~~~~~i~~~~~~--~~~l~~~~ 257 (346)
.|.|+++........... . ..-++.. +.... . +..+..+......|.+++.+ |+.|+.++
T Consensus 547 ~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 547 SVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS 626 (733)
T ss_pred eEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec
Confidence 788998876433211100 0 0000000 00000 0 00011112233456777777 89999999
Q ss_pred ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC------CC-cceeee
Q 019117 258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS------SP-PVLIAR 330 (346)
Q Consensus 258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~------~~-~~~~~~ 330 (346)
.|+.+..+|+.-.. .+.+++..|...+++++|++.- .++++|+.||.+.|+.-.- +. .+....
T Consensus 627 ~d~k~~WfDldlss--------kPyk~lr~H~~avr~Va~H~ry--PLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~ 696 (733)
T KOG0650|consen 627 YDKKMCWFDLDLSS--------KPYKTLRLHEKAVRSVAFHKRY--PLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKR 696 (733)
T ss_pred CCCeeEEEEcccCc--------chhHHhhhhhhhhhhhhhcccc--ceeeeecCCCcEEEEeeeeehhhhcCCceEeeee
Confidence 99999999998764 2788888999999999999877 7999999999999985321 11 233444
Q ss_pred eeee-------EEEEEecCCCCC
Q 019117 331 LICF-------SLHVKYNPQSVY 346 (346)
Q Consensus 331 ~~~~-------~~~~~~spdg~~ 346 (346)
+.+| +.++.|+|..++
T Consensus 697 L~gH~~~~~~gVLd~~wHP~qpW 719 (733)
T KOG0650|consen 697 LRGHEKTNDLGVLDTIWHPRQPW 719 (733)
T ss_pred ccCceeecccceEeecccCCCce
Confidence 5544 566789997653
No 189
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=3.8e-18 Score=148.38 Aligned_cols=256 Identities=10% Similarity=0.134 Sum_probs=176.8
Q ss_pred CCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccC--ceeeeEeeee---c---CCCccceEEEEEEEcCCCCcEEEE
Q 019117 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG--GVIAALQSYV---D---EDKEESFYTVSWACNVDGIPFLVA 103 (346)
Q Consensus 33 ~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~--~~~~~~~~~~---~---~~~~~~v~~~~~~~~~~~~~~l~~ 103 (346)
...|+.+.+-... |..++.+|+.|| |+||+-... +..+.+..+. . ...+.. ..+.|. .... +|++
T Consensus 1109 ~t~Vs~l~liNe~--D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~-~v~dWq--Q~~G-~Ll~ 1182 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQ--DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTG-LVVDWQ--QQSG-HLLV 1182 (1387)
T ss_pred CCccceeeeeccc--chhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCC-eeeehh--hhCC-eEEe
Confidence 3568888887533 668999999999 999985433 2222222221 1 111112 335554 5444 5666
Q ss_pred eecCCeEEEEEccCcceeeeecc-CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee---EEEecccCCCCcc--e
Q 019117 104 GGINGIIRVIDVSNEKLHKSFVG-HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC---ILIFAGAGGHRNE--V 177 (346)
Q Consensus 104 ~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~--v 177 (346)
++.-..|+|||....+.+..+.. ...-|+++.-+-..++.+++|..||.|++||.+.... +...+ .|... |
T Consensus 1183 tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R---~h~~~~~I 1259 (1387)
T KOG1517|consen 1183 TGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR---EHNDVEPI 1259 (1387)
T ss_pred cCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec---ccCCcccc
Confidence 66688999999998888877764 3456777777665789999999999999999986543 44455 57766 9
Q ss_pred EEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc--c-ceEEEEec--CCE
Q 019117 178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS--N-YVDCNRWL--GDF 252 (346)
Q Consensus 178 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~i~~~~~~--~~~ 252 (346)
..+.+.+.+-..|++|+.||.|++||++.... ........|- + .++++..+ ...
T Consensus 1260 v~~slq~~G~~elvSgs~~G~I~~~DlR~~~~---------------------e~~~~iv~~~~yGs~lTal~VH~hapi 1318 (1387)
T KOG1517|consen 1260 VHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK---------------------ETFLTIVAHWEYGSALTALTVHEHAPI 1318 (1387)
T ss_pred eeEEeecCCCcceeeeccCCeEEEEecccCcc---------------------cccceeeeccccCccceeeeeccCCCe
Confidence 99999984445699999999999999998211 1111222222 2 37777777 668
Q ss_pred EEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 253 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
+|+|+. +.|+||++...+.......... +....+.+.+++|+|.. .++|+|+.|..|.||......
T Consensus 1319 iAsGs~-q~ikIy~~~G~~l~~~k~n~~F---~~q~~gs~scL~FHP~~--~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1319 IASGSA-QLIKIYSLSGEQLNIIKYNPGF---MGQRIGSVSCLAFHPHR--LLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred eeecCc-ceEEEEecChhhhcccccCccc---ccCcCCCcceeeecchh--HhhhhccCCceEEEeecCCcC
Confidence 888888 9999999987654322211111 11234677999999988 789999999999999987654
No 190
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=1.3e-16 Score=137.42 Aligned_cols=271 Identities=22% Similarity=0.385 Sum_probs=200.0
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEcC-Cc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGG-NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~-~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (346)
......+..|...|.+++|+| ++..+++++. ++ +++|+...+.....+.. |...+.++++. |++..+
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~--~~~~~~ 213 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSP----DGKLLASGSSLDGTIKLWDLRTGKPLSTLAG-----HTDPVSSLAFS--PDGGLL 213 (466)
T ss_pred CeEEEEEecCcccEEEEEECC----CCCEEEecCCCCCceEEEEcCCCceEEeecc-----CCCceEEEEEc--CCcceE
Confidence 466677789999999999999 6668888874 66 99999888666666654 67788888887 777624
Q ss_pred EEEeecCCeEEEEEccCcceee-eeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee-EEEecccCCCCcceE
Q 019117 101 LVAGGINGIIRVIDVSNEKLHK-SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC-ILIFAGAGGHRNEVL 178 (346)
Q Consensus 101 l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~ 178 (346)
+++++.|+.|++||...+.... .+..|.... ...|+| ++..+++++.|+.+++|++..... +..+. .|...+.
T Consensus 214 ~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~~~~~v~ 288 (466)
T COG2319 214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLS---GHSSSVL 288 (466)
T ss_pred EEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEEEEe---cCCccEE
Confidence 4444899999999988777777 688888875 448999 668888999999999999986665 44443 6899999
Q ss_pred EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEE--EeecccceEEEEec--CCEEE
Q 019117 179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI--ASVHSNYVDCNRWL--GDFIL 254 (346)
Q Consensus 179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~--~~~l~ 254 (346)
++.|.| ++..+++++.|+.+.+||+..... ... ...|...+..+.+. +..++
T Consensus 289 ~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (466)
T COG2319 289 SVAFSP-DGKLLASGSSDGTVRLWDLETGKL-----------------------LSSLTLKGHEGPVSSLSFSPDGSLLV 344 (466)
T ss_pred EEEECC-CCCEEEEeeCCCcEEEEEcCCCce-----------------------EEEeeecccCCceEEEEECCCCCEEE
Confidence 999999 777788798898899998877321 112 23566667777773 14555
Q ss_pred EE-eecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee-
Q 019117 255 SK-SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI- 332 (346)
Q Consensus 255 ~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~- 332 (346)
.+ ..|+.+.+|+..... ......... .+..+.+++ . ......+..++.+.+|+.............
T Consensus 345 ~~~~~d~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (466)
T COG2319 345 SGGSDDGTIRLWDLRTGK---------PLKTLEGHS-NVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT 412 (466)
T ss_pred EeecCCCcEEeeecCCCc---------eeEEecCCc-eEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCC
Confidence 55 678899999998764 111111111 278888888 6 345555899999999999988755544443
Q ss_pred eeEEEEEecCCCC
Q 019117 333 CFSLHVKYNPQSV 345 (346)
Q Consensus 333 ~~~~~~~~spdg~ 345 (346)
..+....+++++.
T Consensus 413 ~~~~~~~~~~~~~ 425 (466)
T COG2319 413 SRVTSLDFSPDGK 425 (466)
T ss_pred CcEEEEEECCCCc
Confidence 5566677777664
No 191
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.82 E-value=1.4e-17 Score=126.49 Aligned_cols=253 Identities=13% Similarity=0.119 Sum_probs=183.6
Q ss_pred CCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeE
Q 019117 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII 110 (346)
Q Consensus 32 h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 110 (346)
-.++|+|.+|++ ++..+|.+-.+. |.||.....+..+....+ ..|...|+.++|+ |..+ .|++++.|..-
T Consensus 9 ~~~pitchAwn~----drt~iAv~~~~~evhiy~~~~~~~w~~~htl--s~Hd~~vtgvdWa--p~sn-rIvtcs~drna 79 (361)
T KOG1523|consen 9 LLEPITCHAWNS----DRTQIAVSPNNHEVHIYSMLGADLWEPAHTL--SEHDKIVTGVDWA--PKSN-RIVTCSHDRNA 79 (361)
T ss_pred ccCceeeeeecC----CCceEEeccCCceEEEEEecCCCCceeceeh--hhhCcceeEEeec--CCCC-ceeEccCCCCc
Confidence 457899999998 789999998886 999998777655555444 3488999999998 7776 89999999999
Q ss_pred EEEEc-cCc--ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecc-cCCCCcceEEEEecCCC
Q 019117 111 RVIDV-SNE--KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG-AGGHRNEVLSVDFHPSD 186 (346)
Q Consensus 111 ~iwd~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~ 186 (346)
++|.. ..+ ++...+..++..++++.|+| .++.|++|+.-..|.||-++..+--..-+. ...+.+.|++++|+| +
T Consensus 80 yVw~~~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-n 157 (361)
T KOG1523|consen 80 YVWTQPSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-N 157 (361)
T ss_pred cccccCCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-C
Confidence 99998 333 35566677999999999999 999999999999999998875544322221 013678899999999 8
Q ss_pred CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCC-CccceeceEEEeecccceEEEEec--CCEEEEEeecCeEE
Q 019117 187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP-TKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIV 263 (346)
Q Consensus 187 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~ 263 (346)
.-+++.|+.|+..++|..--. .+.....+.... ....+..+.......+.+..+.|+ |+.|+-.+.|.++.
T Consensus 158 nVLlaaGs~D~k~rVfSayIK------~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~ 231 (361)
T KOG1523|consen 158 NVLLAAGSTDGKCRVFSAYIK------GVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVS 231 (361)
T ss_pred cceecccccCcceeEEEEeee------ccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceE
Confidence 899999999999999976431 111111111111 111223344444667889999998 99999999999999
Q ss_pred EEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC
Q 019117 264 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE 312 (346)
Q Consensus 264 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d 312 (346)
+-|.....+ .+.......-+..++.|-.+. .++.++.|
T Consensus 232 ~~da~~p~~--------~v~~~~~~~lP~ls~~~ise~---~vv~ag~~ 269 (361)
T KOG1523|consen 232 FVDAAGPSE--------RVQSVATAQLPLLSVSWISEN---SVVAAGYD 269 (361)
T ss_pred EeecCCCch--------hccchhhccCCceeeEeecCC---ceeecCCC
Confidence 999877642 222333333466667776654 35555555
No 192
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=3.1e-17 Score=140.11 Aligned_cols=275 Identities=15% Similarity=0.167 Sum_probs=189.9
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEecc--Cc--eeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE--GG--VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~--~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 104 (346)
..|.-.++|.++|| +++++|++..+| |.+|.-.. +. ....+.- |...|.+++|+ ++|. +|++|
T Consensus 202 ~~Htf~~t~~~~sp----n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW-----H~~~V~~L~fS--~~G~-~LlSG 269 (792)
T KOG1963|consen 202 VHHTFNITCVALSP----NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW-----HHDEVNSLSFS--SDGA-YLLSG 269 (792)
T ss_pred hhhcccceeEEecc----ccceEEEeccCCcEEEEeccccccccccceEEEe-----cccccceeEEe--cCCc-eEeec
Confidence 45777799999999 789999999998 99997543 11 1222322 66788888887 9999 99999
Q ss_pred ecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCC--------CCcc
Q 019117 105 GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGG--------HRNE 176 (346)
Q Consensus 105 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--------~~~~ 176 (346)
+..|.+.+|.+.+++ .+-++.-.++|..+.++| ++.+.+....|..|.+....+......+..... ..+-
T Consensus 270 G~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l 347 (792)
T KOG1963|consen 270 GREGVLVLWQLETGK-KQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSL 347 (792)
T ss_pred ccceEEEEEeecCCC-cccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccccc
Confidence 999999999999988 556677789999999999 888888888899999998866555444442211 2455
Q ss_pred eEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCC----------------------------CCcc
Q 019117 177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF----------------------------PTKY 228 (346)
Q Consensus 177 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~ 228 (346)
.+.++++| ..+.++-.+..|.|.+||+.+.....+............ ....
T Consensus 348 ~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~ 426 (792)
T KOG1963|consen 348 TTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFF 426 (792)
T ss_pred ceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhcc
Confidence 67899999 777788888999999999987433222111111100000 0000
Q ss_pred ---c------------ee--ceEEEeecccceEEEEec----CCEEEEEeecCeEEEEcCCCCCCCCCCc-ccccccccc
Q 019117 229 ---V------------QF--PVFIASVHSNYVDCNRWL----GDFILSKSVDNEIVLWEPKMKEQSPGEG-TADILQKYP 286 (346)
Q Consensus 229 ---~------------~~--~~~~~~~~~~~i~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~ 286 (346)
. .. .-.....|...+....+. ...+++++.||.++||-+...+...... ...+...-.
T Consensus 427 ~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~s 506 (792)
T KOG1963|consen 427 DGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGS 506 (792)
T ss_pred CceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeec
Confidence 0 00 011222455555555554 3489999999999999996655432222 122222222
Q ss_pred CCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117 287 VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (346)
Q Consensus 287 ~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~ 322 (346)
.|..++.+++|+.|| -+++.+.|+.|.+||..+
T Consensus 507 y~k~~i~a~~fs~dG---slla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 507 YHKTPITALCFSQDG---SLLAVSFDDTITIWDYDT 539 (792)
T ss_pred cccCcccchhhcCCC---cEEEEecCCEEEEecCCC
Confidence 377899999999999 356667788999999988
No 193
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.81 E-value=1.7e-17 Score=128.37 Aligned_cols=160 Identities=17% Similarity=0.288 Sum_probs=133.6
Q ss_pred CCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee--cCCeE
Q 019117 33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG--INGII 110 (346)
Q Consensus 33 ~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~--~dg~i 110 (346)
..+|.+|.++. ++|+++-.+.|+|||+.+.+.++.+..... +...+ +++++++++. +++.=+ ..|.|
T Consensus 87 pt~IL~VrmNr------~RLvV~Lee~IyIydI~~MklLhTI~t~~~--n~~gl--~AlS~n~~n~-ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 87 PTSILAVRMNR------KRLVVCLEESIYIYDIKDMKLLHTIETTPP--NPKGL--CALSPNNANC-YLAYPGSTTSGDV 155 (391)
T ss_pred CCceEEEEEcc------ceEEEEEcccEEEEecccceeehhhhccCC--Cccce--EeeccCCCCc-eEEecCCCCCceE
Confidence 46788888864 788888888899999999888888775421 22333 6666667776 777543 46899
Q ss_pred EEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCC-EEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcE
Q 019117 111 RVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDES-VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR 189 (346)
Q Consensus 111 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 189 (346)
.+||+.+-+.+..+..|.+.+.+++|++ ++.+||++++.|+ |+|+.+.+|+.+.+|+... ....|.+++|+| ++.+
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~-~~~~IySL~Fs~-ds~~ 232 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT-YPVSIYSLSFSP-DSQF 232 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCc-eeeEEEEEEECC-CCCe
Confidence 9999999999999999999999999999 9999999999997 6899999999999998532 256789999999 8999
Q ss_pred EEEEecCCeEEEEEccc
Q 019117 190 IASCGMDNTVKIWSMKE 206 (346)
Q Consensus 190 l~s~~~d~~i~iwd~~~ 206 (346)
|.+.+..++|++|.+..
T Consensus 233 L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEecCCCeEEEEEecc
Confidence 99999999999999987
No 194
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=2e-18 Score=139.67 Aligned_cols=208 Identities=20% Similarity=0.282 Sum_probs=159.3
Q ss_pred cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCC
Q 019117 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG 128 (346)
Q Consensus 50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 128 (346)
+.|+.++.|| +.+.+ +.++..+.+.. |.+.+.+-.|+ |||. -|++++.||.|++|. ++|....++....
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~A-----H~~A~~~gRW~--~dGt-gLlt~GEDG~iKiWS-rsGMLRStl~Q~~ 145 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISA-----HAAAISSGRWS--PDGA-GLLTAGEDGVIKIWS-RSGMLRSTVVQNE 145 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhh-----hhhhhhhcccC--CCCc-eeeeecCCceEEEEe-ccchHHHHHhhcC
Confidence 4666666666 77776 45555555543 77788777887 9998 899999999999999 6777666676678
Q ss_pred CceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccc
Q 019117 129 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208 (346)
Q Consensus 129 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 208 (346)
.+|.|++|.|+..+.+++.+ +.+.|=.+.....+...+ +|.+-|.++.|++ ..+++++|+.|-..++||-..
T Consensus 146 ~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~Wk---AHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G-- 217 (737)
T KOG1524|consen 146 ESIRCARWAPNSNSIVFCQG--GHISIKPLAANSKIIRWR---AHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQG-- 217 (737)
T ss_pred ceeEEEEECCCCCceEEecC--CeEEEeecccccceeEEe---ccCcEEEEeecCc-cccceeecCCceeEEeecccC--
Confidence 89999999995555555544 566666776666666777 7999999999998 889999999999999999875
Q ss_pred eeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCC-EEEEEeecCeEEEEcCCCCCCCCCCccccccccccC
Q 019117 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV 287 (346)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 287 (346)
.+++....|+.+|++++|+++ .++.++. ++.|+=.+
T Consensus 218 ----------------------~~Lf~S~~~ey~ITSva~npd~~~~v~S~-nt~R~~~p-------------------- 254 (737)
T KOG1524|consen 218 ----------------------ANLFTSAAEEYAITSVAFNPEKDYLLWSY-NTARFSSP-------------------- 254 (737)
T ss_pred ----------------------cccccCChhccceeeeeeccccceeeeee-eeeeecCC--------------------
Confidence 567778889999999999954 4444443 45552222
Q ss_pred CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117 288 PECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 320 (346)
Q Consensus 288 ~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~ 320 (346)
..+.|..++||+|| ..+++|...|.+.+=.+
T Consensus 255 ~~GSifnlsWS~DG--TQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 255 RVGSIFNLSWSADG--TQATCGTSTGQLIVAYA 285 (737)
T ss_pred CccceEEEEEcCCC--ceeeccccCceEEEeee
Confidence 24689999999999 78999988887765433
No 195
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.80 E-value=2.3e-18 Score=142.13 Aligned_cols=230 Identities=17% Similarity=0.307 Sum_probs=160.3
Q ss_pred CCcEEEEEeccCceee--eEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCc-------ceeeeeccC
Q 019117 57 GNRVTVYQCLEGGVIA--ALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-------KLHKSFVGH 127 (346)
Q Consensus 57 ~~~v~i~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~ 127 (346)
.+.|-||++.....+. .+... ..+..|+.+.|. |-....|++++.||.|++|.+..+ ++...+..|
T Consensus 602 gG~iai~el~~PGrLPDgv~p~l---~Ngt~vtDl~Wd--PFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h 676 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGVMPGL---FNGTLVTDLHWD--PFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIH 676 (1012)
T ss_pred CceEEEEEcCCCCCCCccccccc---ccCceeeecccC--CCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecc
Confidence 3349999987654322 12221 145677778777 533337999999999999998654 345677889
Q ss_pred CCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEcccc
Q 019117 128 GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF 207 (346)
Q Consensus 128 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 207 (346)
...|+++.|+|-..+.|++++.|.+|++||+.+++....+. +|.+.|.+++|+| +|+.+++.+.||+|++|+.++.
T Consensus 677 ~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~---gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~ 752 (1012)
T KOG1445|consen 677 GEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV---GHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSR 752 (1012)
T ss_pred cceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec---cCcCceeEEEECC-CCcceeeeecCceEEEeCCCCC
Confidence 99999999999888999999999999999999999888888 8999999999999 9999999999999999999884
Q ss_pred ceeeeeceeecCCCCCCCCccceeceEEEeecc-cceEEEEec--CCEEEEEeec----CeEEEEcCCCCCCCCCCcccc
Q 019117 208 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS-NYVDCNRWL--GDFILSKSVD----NEIVLWEPKMKEQSPGEGTAD 280 (346)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~--~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~ 280 (346)
.. +++.-.+-. ..-..+.|. |+++++.+.| ..|.+||..+-...
T Consensus 753 e~----------------------pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~------- 803 (1012)
T KOG1445|consen 753 EQ----------------------PVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLR------- 803 (1012)
T ss_pred CC----------------------ccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCC-------
Confidence 32 111111100 111223343 7888877765 44778877654311
Q ss_pred ccccccCCCc-CeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCc
Q 019117 281 ILQKYPVPEC-DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP 325 (346)
Q Consensus 281 ~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~ 325 (346)
.+........ .+.--.+.+|.. .++++|-.|..|++|.+-..++
T Consensus 804 pl~t~~lDvaps~LvP~YD~Ds~-~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 804 PLYTQVLDVAPSPLVPHYDYDSN-VLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred cceeeeecccCccccccccCCCc-eEEEecCCCceEEEEEecCCCc
Confidence 1111111100 011112334443 5888999999999999977664
No 196
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=2.6e-17 Score=128.17 Aligned_cols=272 Identities=11% Similarity=0.138 Sum_probs=199.7
Q ss_pred cCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeee-cCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYV-DEDKEESFYTVSWACNVDGIPFLVAGGING 108 (346)
Q Consensus 31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 108 (346)
.....|..++|.- ++ ..+.|...+.+. +..+..........+.... .......|-.+.. .+| .|++|-.+|
T Consensus 53 ~~~~ris~l~~~~-d~-~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~---~dg--~Litc~~sG 125 (412)
T KOG3881|consen 53 DELDRISSLLFGV-DG-ETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL---ADG--TLITCVSSG 125 (412)
T ss_pred chhhhhhhheeec-CC-ceeEeeccccCcccccccccCCccccccccccccccccccccchhh---cCC--EEEEEecCC
Confidence 4456788888884 32 445666664444 7666666555444331100 0012234444443 345 588888999
Q ss_pred eEEEEEccCcc----eeeeeccCCCceEEEEEeCCCCceEEEeeCC--CCEEEEecCCCeeEEEecccCC------CCcc
Q 019117 109 IIRVIDVSNEK----LHKSFVGHGDSINEIRTQPLKPSLVVSASKD--ESVRLWNVQTGICILIFAGAGG------HRNE 176 (346)
Q Consensus 109 ~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~------~~~~ 176 (346)
.+.+|....+. .+..+..+ ..+..+.-++.....+++|+.. ..+++||+...+.+..-+.... -+-+
T Consensus 126 ~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW 204 (412)
T KOG3881|consen 126 NLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVW 204 (412)
T ss_pred cEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeee
Confidence 99999987443 23334433 4567777788677788889998 8999999998877665543211 2345
Q ss_pred eEEEEecCCC--CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCE
Q 019117 177 VLSVDFHPSD--IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDF 252 (346)
Q Consensus 177 v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~ 252 (346)
++++.|-+ + ...|++++.-+.+++||.+.. ..|+..+...+..|+++... +++
T Consensus 205 ~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~q----------------------RRPV~~fd~~E~~is~~~l~p~gn~ 261 (412)
T KOG3881|consen 205 ITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQ----------------------RRPVAQFDFLENPISSTGLTPSGNF 261 (412)
T ss_pred eccceecC-CCCCceEEEEecceeEEEecCccc----------------------CcceeEeccccCcceeeeecCCCcE
Confidence 78899987 6 789999999999999999973 45777788788888888776 899
Q ss_pred EEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee
Q 019117 253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI 332 (346)
Q Consensus 253 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 332 (346)
+++|..-+.+..||++.++. ....+.+..+.|+++..+|.. .+|++++-|..|+|+|+++.+++...-+.
T Consensus 262 Iy~gn~~g~l~~FD~r~~kl--------~g~~~kg~tGsirsih~hp~~--~~las~GLDRyvRIhD~ktrkll~kvYvK 331 (412)
T KOG3881|consen 262 IYTGNTKGQLAKFDLRGGKL--------LGCGLKGITGSIRSIHCHPTH--PVLASCGLDRYVRIHDIKTRKLLHKVYVK 331 (412)
T ss_pred EEEecccchhheecccCcee--------eccccCCccCCcceEEEcCCC--ceEEeeccceeEEEeecccchhhhhhhhh
Confidence 99999999999999999873 344478888999999999998 79999999999999999998877777778
Q ss_pred eeEEEEEecCC
Q 019117 333 CFSLHVKYNPQ 343 (346)
Q Consensus 333 ~~~~~~~~spd 343 (346)
.+.+++.+.++
T Consensus 332 s~lt~il~~~~ 342 (412)
T KOG3881|consen 332 SRLTFILLRDD 342 (412)
T ss_pred ccccEEEecCC
Confidence 88888877654
No 197
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=2.8e-18 Score=134.76 Aligned_cols=202 Identities=18% Similarity=0.177 Sum_probs=153.2
Q ss_pred EEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEec
Q 019117 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA 168 (346)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 168 (346)
..++++.+|. .|++|+.||++|||++.+...+.....|...|.++.|+| ++.+|++-+.| ..+||+.+++..+....
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 3455668988 999999999999999888888888888999999999999 99999999999 89999999997776665
Q ss_pred ccCCCCcceEEEEecCCCC---c-EEEE-EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce
Q 019117 169 GAGGHRNEVLSVDFHPSDI---Y-RIAS-CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV 243 (346)
Q Consensus 169 ~~~~~~~~v~~~~~~~~~~---~-~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 243 (346)
.. ........+.|+. +. . ++++ -..-+.|+.||+...... .-.+..+.....+.|
T Consensus 225 ~~-~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~------------------~~l~~~~~~~~~~si 284 (398)
T KOG0771|consen 225 PF-SKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGS------------------NFLRLRKKIKRFKSI 284 (398)
T ss_pred Cc-ccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccc------------------cccchhhhhhccCcc
Confidence 21 2345566777875 44 2 2333 333456777777652110 001122233344578
Q ss_pred EEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117 244 DCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (346)
Q Consensus 244 ~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~ 321 (346)
++++.+ |++++.|+.||.|.|++..+.+. ....-..|..-|+.+.|+||. +++++.+.|..+.+..+.
T Consensus 285 Ssl~VS~dGkf~AlGT~dGsVai~~~~~lq~--------~~~vk~aH~~~VT~ltF~Pds--r~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 285 SSLAVSDDGKFLALGTMDGSVAIYDAKSLQR--------LQYVKEAHLGFVTGLTFSPDS--RYLASVSSDNEAAVTKLA 354 (398)
T ss_pred eeEEEcCCCcEEEEeccCCcEEEEEeceeee--------eEeehhhheeeeeeEEEcCCc--CcccccccCCceeEEEEe
Confidence 899888 99999999999999999988762 333445688899999999999 789999999999998886
Q ss_pred CC
Q 019117 322 SS 323 (346)
Q Consensus 322 ~~ 323 (346)
-.
T Consensus 355 vd 356 (398)
T KOG0771|consen 355 VD 356 (398)
T ss_pred ec
Confidence 63
No 198
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=3.8e-16 Score=129.28 Aligned_cols=258 Identities=12% Similarity=0.102 Sum_probs=150.7
Q ss_pred EEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe-ecCCeEEEEEcc-Ccce--eeeecc
Q 019117 52 FATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG-GINGIIRVIDVS-NEKL--HKSFVG 126 (346)
Q Consensus 52 la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~-~~~~--~~~~~~ 126 (346)
+++...++ |.+|++.+...+..++... .......+++ +|+++ +|+++ ..++.|.+|+++ +++. +....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~---~~~~~~~l~~--spd~~-~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~- 77 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD---VPGQVQPMVI--SPDKR-HLYVGVRPEFRVLSYRIADDGALTFAAESP- 77 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe---cCCCCccEEE--CCCCC-EEEEEECCCCcEEEEEECCCCceEEeeeec-
Confidence 33334444 9999996544444444332 2223334544 49998 66555 457899999986 3332 22222
Q ss_pred CCCceEEEEEeCCCCceEEEee-CCCCEEEEecCCC-e---eEEEecccCCCCcceEEEEecCCCCcEE-EEEecCCeEE
Q 019117 127 HGDSINEIRTQPLKPSLVVSAS-KDESVRLWNVQTG-I---CILIFAGAGGHRNEVLSVDFHPSDIYRI-ASCGMDNTVK 200 (346)
Q Consensus 127 ~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~-~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~~i~ 200 (346)
..+....++++| +++++++++ .++.|.+|++.+. . .+..+. +...+.+++++| +++++ ++...++.|.
T Consensus 78 ~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~----~~~~~~~~~~~p-~g~~l~v~~~~~~~v~ 151 (330)
T PRK11028 78 LPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE----GLEGCHSANIDP-DNRTLWVPCLKEDRIR 151 (330)
T ss_pred CCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc----CCCcccEeEeCC-CCCEEEEeeCCCCEEE
Confidence 334567899999 777776665 4889999999642 2 222222 334567788999 66656 5555679999
Q ss_pred EEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEee-cCeEEEEcCCCCCCCCCCc
Q 019117 201 IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-DNEIVLWEPKMKEQSPGEG 277 (346)
Q Consensus 201 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-d~~i~iwd~~~~~~~~~~~ 277 (346)
+||+.......... . ...... .......+.|+ +++++++.. +++|.+|+++....
T Consensus 152 v~d~~~~g~l~~~~---------------~-~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~----- 209 (330)
T PRK11028 152 LFTLSDDGHLVAQE---------------P-AEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG----- 209 (330)
T ss_pred EEEECCCCcccccC---------------C-CceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC-----
Confidence 99997621100000 0 000000 01223456666 778877776 89999999974211
Q ss_pred cccccccccC------CCcCeeEEEEeecCCcceEEEE-cCCCcEEEEEcCCCCc-ce---eeeeeeeEEEEEecCCCCC
Q 019117 278 TADILQKYPV------PECDIWFIKFSCDFHYNAAAIG-NREGKIFVWELQSSPP-VL---IARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 278 ~~~~~~~~~~------~~~~v~~~~~s~~~~~~~l~~~-~~dg~i~iwd~~~~~~-~~---~~~~~~~~~~~~~spdg~~ 346 (346)
....+..+.. +......+.|+|++ ++|+++ ..++.|.+|++..... .. .......+..+.|+|||++
T Consensus 210 ~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg--~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~ 287 (330)
T PRK11028 210 EIECVQTLDMMPADFSDTRWAADIHITPDG--RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKY 287 (330)
T ss_pred CEEEEEEEecCCCcCCCCccceeEEECCCC--CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCE
Confidence 0011221111 11123468899999 566666 4578999999965432 11 1112223567999999975
No 199
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.78 E-value=4.1e-16 Score=118.47 Aligned_cols=238 Identities=16% Similarity=0.217 Sum_probs=164.7
Q ss_pred eEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE-EeecC------C
Q 019117 36 LYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV-AGGIN------G 108 (346)
Q Consensus 36 v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~-~~~~d------g 108 (346)
...++|+. |...++.|.+.|.+||++..-+....-+. ..+.+..+.+.+- .+ +|+ +|+.+ .
T Consensus 8 ~lsvs~NQ----D~ScFava~~~Gfriyn~~P~ke~~~r~~-----~~~G~~~veMLfR--~N-~laLVGGg~~pky~pN 75 (346)
T KOG2111|consen 8 TLSVSFNQ----DHSCFAVATDTGFRIYNCDPFKESASRQF-----IDGGFKIVEMLFR--SN-YLALVGGGSRPKYPPN 75 (346)
T ss_pred eeEEEEcc----CCceEEEEecCceEEEecCchhhhhhhcc-----ccCchhhhhHhhh--hc-eEEEecCCCCCCCCCc
Confidence 34489998 67899999999999999875222111111 1122222333322 12 333 33333 5
Q ss_pred eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecC-CCeeEEEecccCCCCcceEEEEecCCCC
Q 019117 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-TGICILIFAGAGGHRNEVLSVDFHPSDI 187 (346)
Q Consensus 109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 187 (346)
.|.|||=...+++.++. -..+|.+|.+.+ ..+++.- .+.|.||... +.+.+..+.... .+..+.+++-+. +.
T Consensus 76 kviIWDD~k~~~i~el~-f~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~-NPkGlC~~~~~~-~k 148 (346)
T KOG2111|consen 76 KVIIWDDLKERCIIELS-FNSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRS-NPKGLCSLCPTS-NK 148 (346)
T ss_pred eEEEEecccCcEEEEEE-eccceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeeccc-CCCceEeecCCC-Cc
Confidence 79999966666777766 678899999986 4555554 4789999987 566677666432 233344444332 33
Q ss_pred cEEEE-EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCe-EE
Q 019117 188 YRIAS-CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNE-IV 263 (346)
Q Consensus 188 ~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~-i~ 263 (346)
.+|+. |-.-|.|++-|+..... .+...+..|...|.|++.+ |.++|++|..|+ ||
T Consensus 149 ~~LafPg~k~GqvQi~dL~~~~~---------------------~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIR 207 (346)
T KOG2111|consen 149 SLLAFPGFKTGQVQIVDLASTKP---------------------NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIR 207 (346)
T ss_pred eEEEcCCCccceEEEEEhhhcCc---------------------CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEE
Confidence 44443 44568999999987221 1346788999999999999 999999999988 89
Q ss_pred EEcCCCCCCCCCCccccccccccC--CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 264 LWEPKMKEQSPGEGTADILQKYPV--PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 264 iwd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
|||..++. .+.++.. ....|.+++|||+. .+||+.|+.|+|+||.++...
T Consensus 208 IFdt~~g~---------~l~E~RRG~d~A~iy~iaFSp~~--s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 208 IFDTEDGT---------LLQELRRGVDRADIYCIAFSPNS--SWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EEEcCCCc---------EeeeeecCCchheEEEEEeCCCc--cEEEEEcCCCeEEEEEeecCC
Confidence 99999987 4555543 34679999999999 799999999999999998744
No 200
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=1.6e-15 Score=125.56 Aligned_cols=283 Identities=11% Similarity=0.086 Sum_probs=162.2
Q ss_pred cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcC-Cc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGG-NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI 98 (346)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~-~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (346)
..+++...+. +.+....++++| ++++|++++. ++ |.+|++.....+....... .......+ .++|+++
T Consensus 23 g~l~~~~~~~-~~~~~~~l~~sp----d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~---~~~~p~~i--~~~~~g~ 92 (330)
T PRK11028 23 GALTLLQVVD-VPGQVQPMVISP----DKRHLYVGVRPEFRVLSYRIADDGALTFAAESP---LPGSPTHI--STDHQGR 92 (330)
T ss_pred CceeeeeEEe-cCCCCccEEECC----CCCEEEEEECCCCcEEEEEECCCCceEEeeeec---CCCCceEE--EECCCCC
Confidence 3445555554 335567889999 6787766543 33 9999987433333333221 11223334 4559998
Q ss_pred cEEEEee-cCCeEEEEEccCc-c---eeeeeccCCCceEEEEEeCCCCceE-EEeeCCCCEEEEecCCCeeEEE-----e
Q 019117 99 PFLVAGG-INGIIRVIDVSNE-K---LHKSFVGHGDSINEIRTQPLKPSLV-VSASKDESVRLWNVQTGICILI-----F 167 (346)
Q Consensus 99 ~~l~~~~-~dg~i~iwd~~~~-~---~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~-----~ 167 (346)
+|++++ .++.|.+|++++. . .+..+. +......++++| +++++ ++...++.|.+||+.+...+.. .
T Consensus 93 -~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~ 169 (330)
T PRK11028 93 -FLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEV 169 (330)
T ss_pred -EEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccccCCCce
Confidence 666665 4889999999642 2 222232 234467889999 66665 5556679999999976433221 1
Q ss_pred cccCCCCcceEEEEecCCCCcEEEEEec-CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEE
Q 019117 168 AGAGGHRNEVLSVDFHPSDIYRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN 246 (346)
Q Consensus 168 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 246 (346)
.. ........++|+| ++++++++.. ++.|.+|++................+.. ..+......+
T Consensus 170 ~~--~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~-------------~~~~~~~~~i 233 (330)
T PRK11028 170 TT--VEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD-------------FSDTRWAADI 233 (330)
T ss_pred ec--CCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc-------------CCCCccceeE
Confidence 11 1234567899999 8787777765 8999999997421111000000000000 0011122345
Q ss_pred Eec--CCEEEEEee-cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc-CCCcEEEEEcC-
Q 019117 247 RWL--GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-REGKIFVWELQ- 321 (346)
Q Consensus 247 ~~~--~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~iwd~~- 321 (346)
.++ +++++++.. ++.|.+|++..... ....+...... .....+.|+||+ ++|+++. .++.|.+|++.
T Consensus 234 ~~~pdg~~lyv~~~~~~~I~v~~i~~~~~-----~~~~~~~~~~~-~~p~~~~~~~dg--~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 234 HITPDGRHLYACDRTASLISVFSVSEDGS-----VLSFEGHQPTE-TQPRGFNIDHSG--KYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EECCCCCEEEEecCCCCeEEEEEEeCCCC-----eEEEeEEEecc-ccCCceEECCCC--CEEEEEEccCCcEEEEEEcC
Confidence 555 778888754 78999999965421 01122222211 245678999999 4555544 58999999875
Q ss_pred -CCCcce--eeeeeeeEEEEEe
Q 019117 322 -SSPPVL--IARLICFSLHVKY 340 (346)
Q Consensus 322 -~~~~~~--~~~~~~~~~~~~~ 340 (346)
++.... .+.....+.+++|
T Consensus 306 ~~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 306 ETGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred CCCcEEEccccccCCCceEEEE
Confidence 344322 2223334556554
No 201
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.6e-17 Score=130.54 Aligned_cols=182 Identities=20% Similarity=0.261 Sum_probs=129.0
Q ss_pred EEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceee
Q 019117 132 NEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYV 211 (346)
Q Consensus 132 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 211 (346)
..++|+. ++..+++|+.||++++|++.+...+.... .|...|.++.|+| ++.+|++-+.| ..+||+.+++....
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~---~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a 221 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEI---AHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALA 221 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhH---hhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhh
Confidence 6899999 88999999999999999987777777666 6999999999999 99999999999 99999999842110
Q ss_pred eeceeecCCCCCCCCccceeceEEEeecccceEEEEec--C---C-EEEE-EeecCeEEEEcCCCCCCCCCCcccccccc
Q 019117 212 EKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--G---D-FILS-KSVDNEIVLWEPKMKEQSPGEGTADILQK 284 (346)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~---~-~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 284 (346)
.+. -..-+.....+.|. + . ++++ ...-+.|+.|++...+... .. ...+
T Consensus 222 ~~t---------------------~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~---~l-~~~~ 276 (398)
T KOG0771|consen 222 RKT---------------------PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN---FL-RLRK 276 (398)
T ss_pred hcC---------------------CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc---cc-chhh
Confidence 000 01111223334444 2 1 2222 2334566676665543210 00 1222
Q ss_pred ccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee--eeeeeEEEEEecCCCCC
Q 019117 285 YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA--RLICFSLHVKYNPQSVY 346 (346)
Q Consensus 285 ~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~spdg~~ 346 (346)
.......|++++.++|| ++++.|+.||.|.|++..+.+.++.. .+.+.++.+.|+||.+|
T Consensus 277 ~~~~~~siSsl~VS~dG--kf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~ 338 (398)
T KOG0771|consen 277 KIKRFKSISSLAVSDDG--KFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRY 338 (398)
T ss_pred hhhccCcceeEEEcCCC--cEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCc
Confidence 22234589999999999 79999999999999999988765543 34557999999999886
No 202
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.77 E-value=2.2e-16 Score=139.57 Aligned_cols=273 Identities=11% Similarity=0.108 Sum_probs=178.2
Q ss_pred ccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc----eeeeEeeeecCCCccceEEEEEE
Q 019117 18 SKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG----VIAALQSYVDEDKEESFYTVSWA 92 (346)
Q Consensus 18 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~ 92 (346)
..+....++.+|..|...|..++.++ +.+.+|++|+.|| |++|++.+-. ..+.-..+. ..+..+.++.++
T Consensus 1033 gW~p~G~lVAhL~Ehs~~v~k~a~s~---~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys--~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1033 GWNPRGILVAHLHEHSSAVIKLAVSS---EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYS--PEGSRVEKVTMC 1107 (1431)
T ss_pred CCCccceEeehhhhccccccceeecC---CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEe--ccCCceEEEEec
Confidence 34667788899999999999999987 2458999999999 9999987532 222222332 256778888887
Q ss_pred EcCCCCcEEEEeecCCeEEEEEccCc--c-----eeeeecc--CCCceEEEEEeCCCCc-eEEEeeCCCCEEEEecCCCe
Q 019117 93 CNVDGIPFLVAGGINGIIRVIDVSNE--K-----LHKSFVG--HGDSINEIRTQPLKPS-LVVSASKDESVRLWNVQTGI 162 (346)
Q Consensus 93 ~~~~~~~~l~~~~~dg~i~iwd~~~~--~-----~~~~~~~--~~~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~ 162 (346)
+.+. .+|.++.||.|++.+++.. + +.+.... ....|..-+|...... .++.+..-+.|..||++...
T Consensus 1108 --~~~~-~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1108 --GNGD-QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred --cCCC-eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence 6677 8999999999999998762 1 1111111 2223444445443344 77788888999999999887
Q ss_pred eEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe-eccc
Q 019117 163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS-VHSN 241 (346)
Q Consensus 163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 241 (346)
....++.. ...+.|++++.+| .+.++++|+..|.+.+||+|-. .++.... .+..
T Consensus 1185 ~~w~lk~~-~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~-----------------------~~i~sw~~P~~~ 1239 (1431)
T KOG1240|consen 1185 DAWRLKNQ-LRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFR-----------------------VPILSWEHPARA 1239 (1431)
T ss_pred hHHhhhcC-ccccceeEEEecC-CceEEEEecCCceEEEEEeecC-----------------------ceeecccCcccC
Confidence 77766633 2357899999999 8899999999999999999982 2222211 1224
Q ss_pred ceEEEEec---C--CEEEEEe--ecCeEEEEcCCCCCCCCCCccc--cccccccCC------CcCe--eEEEEeecCCcc
Q 019117 242 YVDCNRWL---G--DFILSKS--VDNEIVLWEPKMKEQSPGEGTA--DILQKYPVP------ECDI--WFIKFSCDFHYN 304 (346)
Q Consensus 242 ~i~~~~~~---~--~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~------~~~v--~~~~~s~~~~~~ 304 (346)
+|+.+..+ + ...++++ ..+.|.+|++.++......... .+......+ ...+ ...++. ++. .
T Consensus 1240 ~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~-~~~-~ 1317 (1431)
T KOG1240|consen 1240 PIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVC-EKN-G 1317 (1431)
T ss_pred CcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecc-cCC-c
Confidence 45554444 3 4455444 4788999999887532111000 000000000 1111 112222 222 5
Q ss_pred eEEEEcCCCcEEEEEcCCCCc
Q 019117 305 AAAIGNREGKIFVWELQSSPP 325 (346)
Q Consensus 305 ~l~~~~~dg~i~iwd~~~~~~ 325 (346)
++.+|+.|..|+.||...-+.
T Consensus 1318 ~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1318 FLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred eeeecCCccceeeccCCCccc
Confidence 899999999999999987653
No 203
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.77 E-value=8.8e-17 Score=122.13 Aligned_cols=214 Identities=12% Similarity=0.156 Sum_probs=164.4
Q ss_pred CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc---eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEec
Q 019117 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK---LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158 (346)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~ 158 (346)
..++|++.+|. +|+. .+|.+-.+..|.||.....+ ...++..|...|+.|.|+| ..+.|++++.|..-++|..
T Consensus 9 ~~~pitchAwn--~drt-~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 9 LLEPITCHAWN--SDRT-QIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred ccCceeeeeec--CCCc-eEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCcccccc
Confidence 34678888887 8888 99999999999999987654 6778899999999999999 8999999999999999998
Q ss_pred CCC-e--eEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEE
Q 019117 159 QTG-I--CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 235 (346)
Q Consensus 159 ~~~-~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (346)
..+ + +...+. .+....+++.|+| .++.|++|+....|.+|-+.....-. .....
T Consensus 85 ~~~~~WkptlvLl---RiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWW-------------------VsKhi 141 (361)
T KOG1523|consen 85 PSGGTWKPTLVLL---RINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWW-------------------VSKHI 141 (361)
T ss_pred CCCCeeccceeEE---EeccceeeEeecC-cCceEEeccCccEEEEEEEeccccee-------------------hhhhh
Confidence 433 2 222333 3889999999999 99999999999999999887621100 00112
Q ss_pred EeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCC---------CCCCccccccccccCCCcCeeEEEEeecCCcc
Q 019117 236 ASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQ---------SPGEGTADILQKYPVPECDIWFIKFSCDFHYN 304 (346)
Q Consensus 236 ~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 304 (346)
-..+...|++++|+ +-+|++|+.|+..|+|..--... ....+...++.++....+.+..+.|+|+| .
T Consensus 142 kkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG--~ 219 (361)
T KOG1523|consen 142 KKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG--N 219 (361)
T ss_pred CCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC--C
Confidence 22355678899998 45888899999999997532211 11223444556665667899999999999 7
Q ss_pred eEEEEcCCCcEEEEEcCCCC
Q 019117 305 AAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 305 ~l~~~~~dg~i~iwd~~~~~ 324 (346)
.|+-.+.|+.+.+=|.....
T Consensus 220 ~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 220 RLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred EeeEecCCCceEEeecCCCc
Confidence 89999999999999987654
No 204
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.77 E-value=1.3e-18 Score=138.26 Aligned_cols=240 Identities=19% Similarity=0.254 Sum_probs=181.6
Q ss_pred CceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEE
Q 019117 34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVI 113 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw 113 (346)
..|.++.|-. +.+++|++....+.||| ..|..++.+.. ...|..+.|. |..- +|++++..|.++--
T Consensus 171 Etv~Dv~~LH----neq~~AVAQK~y~yvYD-~~GtElHClk~------~~~v~rLeFL--PyHf-LL~~~~~~G~L~Y~ 236 (545)
T KOG1272|consen 171 ETVRDVTFLH----NEQFFAVAQKKYVYVYD-NNGTELHCLKR------HIRVARLEFL--PYHF-LLVAASEAGFLKYQ 236 (545)
T ss_pred hhhhhhhhhc----chHHHHhhhhceEEEec-CCCcEEeehhh------cCchhhhccc--chhh-eeeecccCCceEEE
Confidence 4577777776 56899999888899999 66777777763 3455557776 7666 89999999999999
Q ss_pred EccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEE
Q 019117 114 DVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC 193 (346)
Q Consensus 114 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 193 (346)
|+.+|+.+..+..-.+.+..++-+| -...+-+|...|+|.+|.....+++..+. .|.++|.++++.+ +|.+++|.
T Consensus 237 DVS~GklVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~skePLvKiL---cH~g~V~siAv~~-~G~YMaTt 311 (545)
T KOG1272|consen 237 DVSTGKLVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNSKEPLVKIL---CHRGPVSSIAVDR-GGRYMATT 311 (545)
T ss_pred eechhhhhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecCCCCcchHHHHH---hcCCCcceEEECC-CCcEEeec
Confidence 9999999999998889999999999 77789999999999999999999888887 7999999999998 99999999
Q ss_pred ecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCC
Q 019117 194 GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQS 273 (346)
Q Consensus 194 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 273 (346)
+.|..++|||+++.. .+.++.. +-....++++..-+++.+....|.||.=......
T Consensus 312 G~Dr~~kIWDlR~~~-----------------------ql~t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~ 367 (545)
T KOG1272|consen 312 GLDRKVKIWDLRNFY-----------------------QLHTYRT-PHPASNLSLSQKGLLALSYGDHVQIWKDALKGSG 367 (545)
T ss_pred ccccceeEeeecccc-----------------------ccceeec-CCCccccccccccceeeecCCeeeeehhhhcCCC
Confidence 999999999999943 2222322 4456778888666666777778999953221100
Q ss_pred CCCccccccccccCC--CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 274 PGEGTADILQKYPVP--ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 274 ~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
. ....+-.| .+.|..+.|.|-. .+|-.|...|.-.+.=--.|+
T Consensus 368 ----~--~~~pYm~H~~~~~V~~l~FcP~E--DvLGIGH~~G~tsilVPGsGe 412 (545)
T KOG1272|consen 368 ----H--GETPYMNHRCGGPVEDLRFCPYE--DVLGIGHAGGITSILVPGSGE 412 (545)
T ss_pred ----C--CCcchhhhccCcccccceeccHH--HeeeccccCCceeEeccCCCC
Confidence 0 11111111 3489999999977 577776666644444333343
No 205
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=4.1e-16 Score=133.36 Aligned_cols=269 Identities=19% Similarity=0.228 Sum_probs=181.8
Q ss_pred EEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCc
Q 019117 39 VVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE 118 (346)
Q Consensus 39 ~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 118 (346)
-.|++ |++.+.....+.|.||...++.++..+.. |..++..+.+..++....++.+++.+|.|++||...+
T Consensus 22 avfSn----D~k~l~~~~~~~V~VyS~~Tg~~i~~l~~-----~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~ 92 (792)
T KOG1963|consen 22 AVFSN----DAKFLFLCTGNFVKVYSTATGECITSLED-----HTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDG 92 (792)
T ss_pred ccccc----CCcEEEEeeCCEEEEEecchHhhhhhccc-----ccCccceeeecCCCccceEEEEEecCccEEEecCCCc
Confidence 45777 78899999889999999999999886664 6677777888766555348889999999999999999
Q ss_pred ceeeeeccCCCceEEEEEeCC--CCceEE-EeeCCCCEEE-EecCCCeeEEE-----ecc-----cCCCCcceEEEEecC
Q 019117 119 KLHKSFVGHGDSINEIRTQPL--KPSLVV-SASKDESVRL-WNVQTGICILI-----FAG-----AGGHRNEVLSVDFHP 184 (346)
Q Consensus 119 ~~~~~~~~~~~~v~~~~~~~~--~~~~l~-s~~~d~~i~i-wd~~~~~~~~~-----~~~-----~~~~~~~v~~~~~~~ 184 (346)
..++++..+ .++..+.+.|. +...++ .+..|..+.. ......+.... +.. ...+.. ..++.+++
T Consensus 93 ~Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~ 170 (792)
T KOG1963|consen 93 ELLKTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNN 170 (792)
T ss_pred EEEEEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcC
Confidence 988888743 33444444331 111122 2222211110 11111111111 110 001222 46777876
Q ss_pred CCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeE
Q 019117 185 SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEI 262 (346)
Q Consensus 185 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i 262 (346)
.+.+.... .+..+.+|+........ .....-..|...+++.+++ +++++++..||.|
T Consensus 171 -~ge~~~i~-~~~~~~~~~v~~~~~~~-------------------~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI 229 (792)
T KOG1963|consen 171 -SGEFKGIV-HMCKIHIYFVPKHTKHT-------------------SSRDITVHHTFNITCVALSPNERYLAAGDSDGRI 229 (792)
T ss_pred -CceEEEEE-EeeeEEEEEecccceee-------------------ccchhhhhhcccceeEEeccccceEEEeccCCcE
Confidence 66655544 45678888887622100 0111222355557888887 8899999999999
Q ss_pred EEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecC
Q 019117 263 VLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNP 342 (346)
Q Consensus 263 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~sp 342 (346)
.+|.-...+. .......+..|...|.+++|+++| .+|++|+.+|.+.+|.+.++++....++.+.+.++.+||
T Consensus 230 ~vw~d~~~~~-----~~~t~t~lHWH~~~V~~L~fS~~G--~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ 302 (792)
T KOG1963|consen 230 LVWRDFGSSD-----DSETCTLLHWHHDEVNSLSFSSDG--AYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSP 302 (792)
T ss_pred EEEecccccc-----ccccceEEEecccccceeEEecCC--ceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcC
Confidence 9997544211 112445677788899999999999 799999999999999999999888899999999999999
Q ss_pred CCCC
Q 019117 343 QSVY 346 (346)
Q Consensus 343 dg~~ 346 (346)
|+.+
T Consensus 303 ds~~ 306 (792)
T KOG1963|consen 303 DSDL 306 (792)
T ss_pred CCCe
Confidence 9864
No 206
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.9e-16 Score=122.01 Aligned_cols=165 Identities=15% Similarity=0.183 Sum_probs=129.3
Q ss_pred CCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccC------cceeeeec-cCCCceEEEEEeCCCCceEEEeeCCCCE
Q 019117 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN------EKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESV 153 (346)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i 153 (346)
.|.+.|.++.|+ .+++ +|++|+.|..+++|.+.. .+++.... .|...|.|++|.. +...+++|+.+++|
T Consensus 54 ~H~GCiNAlqFS--~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 54 EHTGCINALQFS--HNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGTV 129 (609)
T ss_pred hhccccceeeec--cCCe-EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCccee
Confidence 377788888877 7788 999999999999999854 34454443 3568999999998 88999999999999
Q ss_pred EEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceece
Q 019117 154 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 233 (346)
Q Consensus 154 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (346)
..-|+++.+.+..+... ...+.|+.+..+| -.+.+++.+.++.|.+||.+..+.. ...
T Consensus 130 I~HDiEt~qsi~V~~~~-~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~--------------------~~~ 187 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANEN-NNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNP--------------------ISL 187 (609)
T ss_pred Eeeecccceeeeeeccc-CcccceeecccCC-CCceEEEEecCceEEEEeccCCCCC--------------------Cce
Confidence 99999999999888621 1345999999999 6888999999999999999983321 112
Q ss_pred EEEeecccceEEEEec---CCEEEEEeecCeEEEEcCCCCC
Q 019117 234 FIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKE 271 (346)
Q Consensus 234 ~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~ 271 (346)
...........++.|+ +.+|++.+..+-+.+||.+...
T Consensus 188 ~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~ 228 (609)
T KOG4227|consen 188 VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQA 228 (609)
T ss_pred eeecCCCccceeeeecCCCceeEEeccccCCCCceeecccc
Confidence 2233334445566666 7799999999999999988654
No 207
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=1.1e-16 Score=130.32 Aligned_cols=227 Identities=13% Similarity=0.151 Sum_probs=164.2
Q ss_pred eecc---ccccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEec------cCceeeeEeeeecCC
Q 019117 12 VGSL---TPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCL------EGGVIAALQSYVDED 81 (346)
Q Consensus 12 ~~~~---~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~------~~~~~~~~~~~~~~~ 81 (346)
.|.| .+.....++++.+|++|.++|.|++..+ ++..+.+|+-|+ |+.|++- +......+... ..+
T Consensus 320 ~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~----n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~-l~G 394 (577)
T KOG0642|consen 320 LWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS----NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGT-LLG 394 (577)
T ss_pred hhhhcccCCccccceeeeEEEecccCceEEEEecC----CceEEEeeccCceeeeeccCCCCCcccccCcchhccc-eec
Confidence 4666 5666788999999999999999999998 789999999999 9999654 21211122211 124
Q ss_pred CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeecc--CCCceEEEEEeCCCCceEEEeeCCCCEEEEecC
Q 019117 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG--HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159 (346)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 159 (346)
|.+.++.++++ .... .|++++.||+++.|+...... .++.. ..+.-.++.+-.......++...-+.-.+.++.
T Consensus 395 htdavw~l~~s--~~~~-~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~e 470 (577)
T KOG0642|consen 395 HTDAVWLLALS--STKD-RLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDME 470 (577)
T ss_pred cccceeeeeec--cccc-ceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhh
Confidence 88889888887 4444 799999999999999876655 33322 223445666655332344444434444445555
Q ss_pred CCeeEEEecccC----CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEE
Q 019117 160 TGICILIFAGAG----GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 235 (346)
Q Consensus 160 ~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (346)
....+..+.... .....+.-+.++| +..+.+++..|+.|+++|..+ ..++..
T Consensus 471 v~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~-----------------------~~~l~s 526 (577)
T KOG0642|consen 471 VVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKT-----------------------GKILHS 526 (577)
T ss_pred hhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccc-----------------------cccchh
Confidence 555555444211 0123567788898 789999999999999999998 567888
Q ss_pred EeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCC
Q 019117 236 ASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKE 271 (346)
Q Consensus 236 ~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~ 271 (346)
...|...++++++. |-+|++++.|+.+++|.+....
T Consensus 527 ~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 527 MVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred eeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 88999999999998 7899999999999999997654
No 208
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.73 E-value=4.3e-16 Score=126.34 Aligned_cols=169 Identities=17% Similarity=0.188 Sum_probs=126.9
Q ss_pred EEEEEcC-CcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccC------------
Q 019117 51 VFATVGG-NRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN------------ 117 (346)
Q Consensus 51 ~la~~~~-~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------------ 117 (346)
-|..|-. +.|.+.|....+..+.+. .........++++.|. |.+...++++-.+|.+.+||..-
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfn-e~r~i~ktsvT~ikWv--pg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~ 263 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFN-EERLINKSSVTCIKWV--PGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQAL 263 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhh-hcccccccceEEEEEE--eCCCceEEEEEecCceEEeeccccccCCCCccccc
Confidence 3444443 448887766532222222 1222245789999999 44444677888899999997521
Q ss_pred --c--------------ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117 118 --E--------------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 181 (346)
Q Consensus 118 --~--------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 181 (346)
+ .++..+.--.+.|+.++|+| ++.+||+.+.||.++|+|..+.+++..++ ..-+...|++
T Consensus 264 k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mk---SYFGGLLCvc 339 (636)
T KOG2394|consen 264 KDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMK---SYFGGLLCVC 339 (636)
T ss_pred CCCCeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHH---hhccceEEEE
Confidence 0 11112222345789999999 99999999999999999999988888877 5678999999
Q ss_pred ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecC
Q 019117 182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG 250 (346)
Q Consensus 182 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 250 (346)
|+| |+++|++|++|.-|.||.+.. ...+..-.+|..+|..++|++
T Consensus 340 WSP-DGKyIvtGGEDDLVtVwSf~e-----------------------rRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 340 WSP-DGKYIVTGGEDDLVTVWSFEE-----------------------RRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EcC-CccEEEecCCcceEEEEEecc-----------------------ceEEEeccccccceeeEeecc
Confidence 999 999999999999999999988 556778889999999999985
No 209
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.72 E-value=3.5e-16 Score=115.86 Aligned_cols=238 Identities=14% Similarity=0.141 Sum_probs=168.3
Q ss_pred CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeec-cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC
Q 019117 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160 (346)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 160 (346)
|...++++.|. .++ +|.+|...|.|++|++.+.+....++ .+...|+.+..-| + ..+.+-+.|..+.+|++.-
T Consensus 13 ~~~~v~s~~fq--a~~--rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p-~-d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 13 HSSSVTSVLFQ--ANE--RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP-N-DSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred ccchheehhhc--cch--hhhcccccceEEEEEeecCccchhhhhhccceeeceeecC-C-cchhhcCCCceEEEEEccC
Confidence 66677777775 444 69999999999999999999888888 5788999999998 4 6788899999999999864
Q ss_pred CeeEEEec---------------------------cc-----------------------CCCCcceEEEEecCCCC--c
Q 019117 161 GICILIFA---------------------------GA-----------------------GGHRNEVLSVDFHPSDI--Y 188 (346)
Q Consensus 161 ~~~~~~~~---------------------------~~-----------------------~~~~~~v~~~~~~~~~~--~ 188 (346)
+..+..-. .. .+..+.+++..+....+ -
T Consensus 87 s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~ 166 (323)
T KOG0322|consen 87 SAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTF 166 (323)
T ss_pred cceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceE
Confidence 21111000 00 02234455655433222 3
Q ss_pred EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEc
Q 019117 189 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWE 266 (346)
Q Consensus 189 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd 266 (346)
+++.|-++|.+.+||+........... ..........|..+|.++.|. -+.=++|+.+..+..|+
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~-------------~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~S 233 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQ-------------SSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYS 233 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeecccc-------------ccccccchhhccCcceeeeechhhcCCcCCCccccceeee
Confidence 566788899999999998432221111 112344566799999999997 44567788888899999
Q ss_pred CCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee-eeeeEEEEEecCCCC
Q 019117 267 PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR-LICFSLHVKYNPQSV 345 (346)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~spdg~ 345 (346)
++..... .............|..+.+-||+ +++|+++.|+.|+||+.++..++.+.+ +.+.+++++|+||..
T Consensus 234 l~~s~gs-----lq~~~e~~lknpGv~gvrIRpD~--KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~ 306 (323)
T KOG0322|consen 234 LNHSTGS-----LQIRKEITLKNPGVSGVRIRPDG--KILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE 306 (323)
T ss_pred eccccCc-----ccccceEEecCCCccceEEccCC--cEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc
Confidence 8765211 11112222234578889999999 799999999999999999999877654 446699999999953
No 210
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=4.4e-17 Score=132.44 Aligned_cols=184 Identities=18% Similarity=0.192 Sum_probs=144.4
Q ss_pred eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCC-CCcEEEEEecCCe
Q 019117 120 LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS-DIYRIASCGMDNT 198 (346)
Q Consensus 120 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~ 198 (346)
+.+.+.+|++-|+++.|+. ++.+|++|++|-.+.|||.-..+++..+.. +|...|.++.|-|. +..++++|..|..
T Consensus 42 lE~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~T--gHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSIST--GHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hhhhhccccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeec--ccccceeEEeeeccCCCeEEEeccCcce
Confidence 3457789999999999999 999999999999999999998888888876 89999999999993 4578899999999
Q ss_pred EEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCC-C
Q 019117 199 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQS-P 274 (346)
Q Consensus 199 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~-~ 274 (346)
|++||+...+.... ......+......|.+.|..++.. ++.+.++++||+|+-+|++....- +
T Consensus 119 i~lfdl~~~~~~~~-------------d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p 185 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGM-------------DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP 185 (758)
T ss_pred EEEEeccccccccc-------------ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc
Confidence 99999987332111 011234556677888888888876 589999999999999999975321 1
Q ss_pred CCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117 275 GEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 320 (346)
Q Consensus 275 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~ 320 (346)
.......+..+...--...++.++|... .+|++|+.|-..++||.
T Consensus 186 ~~~~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 186 DEDCPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDR 230 (758)
T ss_pred cccccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhh
Confidence 1112223334443445678899999876 69999999999999994
No 211
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.72 E-value=5.2e-16 Score=118.61 Aligned_cols=284 Identities=14% Similarity=0.173 Sum_probs=181.5
Q ss_pred EEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCc
Q 019117 39 VVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE 118 (346)
Q Consensus 39 ~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 118 (346)
.+||| +|+++|+++.-++.|-|..+-+..+.+.. -+.|.-+.|. .|....|.....++.|.+|++...
T Consensus 14 c~fSp----~g~yiAs~~~yrlviRd~~tlq~~qlf~c------ldki~yieW~--ads~~ilC~~yk~~~vqvwsl~Qp 81 (447)
T KOG4497|consen 14 CSFSP----CGNYIASLSRYRLVIRDSETLQLHQLFLC------LDKIVYIEWK--ADSCHILCVAYKDPKVQVWSLVQP 81 (447)
T ss_pred eeECC----CCCeeeeeeeeEEEEeccchhhHHHHHHH------HHHhhheeee--ccceeeeeeeeccceEEEEEeecc
Confidence 57999 89999999988888888777665544432 2345557787 666646777788999999999999
Q ss_pred ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCe
Q 019117 119 KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT 198 (346)
Q Consensus 119 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 198 (346)
+-...+......+..+.|+|++..+|.+...|-.|.+|.+.+.+....-. ....+..++|+| ++++.+.++.-..
T Consensus 82 ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~----pK~~~kg~~f~~-dg~f~ai~sRrDC 156 (447)
T KOG4497|consen 82 EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH----PKTNVKGYAFHP-DGQFCAILSRRDC 156 (447)
T ss_pred eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc----cccCceeEEECC-CCceeeeeecccH
Confidence 98888988889999999999444677788889999999998766544322 344568899998 8887776654321
Q ss_pred ---EEEE-----------EccccceeeeeceeecCCCCCCCCccceeceEEEeec-ccceEEEEec--CCEEEEEeecCe
Q 019117 199 ---VKIW-----------SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH-SNYVDCNRWL--GDFILSKSVDNE 261 (346)
Q Consensus 199 ---i~iw-----------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~--~~~l~~~~~d~~ 261 (346)
+.+. ++.+ .....+.|.........-........+..| .-.+..+.|+ +++|++|+.|+.
T Consensus 157 kdyv~i~~c~~W~ll~~f~~dT---~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~ 233 (447)
T KOG4497|consen 157 KDYVQISSCKAWILLKEFKLDT---IDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQM 233 (447)
T ss_pred HHHHHHHhhHHHHHHHhcCCCc---ccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchh
Confidence 1111 1111 001111111111110000000011111222 3568888998 789999999999
Q ss_pred EEEEcCCCCCCCCCC---------------------------------------------------------cccccccc
Q 019117 262 IVLWEPKMKEQSPGE---------------------------------------------------------GTADILQK 284 (346)
Q Consensus 262 i~iwd~~~~~~~~~~---------------------------------------------------------~~~~~~~~ 284 (346)
+|+-+--+.+...+. ....+...
T Consensus 234 lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD 313 (447)
T KOG4497|consen 234 LRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTD 313 (447)
T ss_pred hhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCC
Confidence 998765443320000 00001112
Q ss_pred ccCCCcCeeEEEEeecCCcceEEEEcC--CCcEEEEEcCCCCcceeeeeeeeEEEEEecCCC
Q 019117 285 YPVPECDIWFIKFSCDFHYNAAAIGNR--EGKIFVWELQSSPPVLIARLICFSLHVKYNPQS 344 (346)
Q Consensus 285 ~~~~~~~v~~~~~s~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg 344 (346)
+..+...+.-++|++|. .++++-.+ -+.+-+||++..+.-.+.....++....|.|..
T Consensus 314 ~pnPk~g~g~lafs~Ds--~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~ 373 (447)
T KOG4497|consen 314 FPNPKCGAGKLAFSCDS--TYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGR 373 (447)
T ss_pred CCCcccccceeeecCCc--eEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCC
Confidence 22344567889999998 57776543 457999999988765555555667777777753
No 212
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1.8e-15 Score=129.05 Aligned_cols=227 Identities=15% Similarity=0.062 Sum_probs=142.5
Q ss_pred EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC---CeEEEEEccCcce--eeeeccCCCceEEE
Q 019117 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN---GIIRVIDVSNEKL--HKSFVGHGDSINEI 134 (346)
Q Consensus 60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~--~~~~~~~~~~v~~~ 134 (346)
|.+||..... ...+.. +...+...+|+ |+|+ .|+..+.+ ..|.+||+.+++. +..+.+| ...+
T Consensus 186 i~i~d~dg~~-~~~lt~-----~~~~v~~p~wS--PDG~-~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~ 253 (429)
T PRK01742 186 VRVADYDGFN-QFIVNR-----SSQPLMSPAWS--PDGS-KLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAP 253 (429)
T ss_pred EEEECCCCCC-ceEecc-----CCCccccceEc--CCCC-EEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCce
Confidence 8888865443 333332 44556666666 9998 77776543 4799999988754 3333333 3468
Q ss_pred EEeCCCCceEEEe-eCCCCEEEE--ecCCCeeEEEecccCCCCcceEEEEecCCCCcEEE-EEecCCeEEEEEcccccee
Q 019117 135 RTQPLKPSLVVSA-SKDESVRLW--NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA-SCGMDNTVKIWSMKEFWTY 210 (346)
Q Consensus 135 ~~~~~~~~~l~s~-~~d~~i~iw--d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~ 210 (346)
+|+| +++.|+.+ +.+|.+.|| |+.+++. ..+. .+...+....|+| ++..|+ ++..++...+|++.....
T Consensus 254 ~wSP-DG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt---~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~- 326 (429)
T PRK01742 254 AFSP-DGSRLAFASSKDGVLNIYVMGANGGTP-SQLT---SGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGG- 326 (429)
T ss_pred eECC-CCCEEEEEEecCCcEEEEEEECCCCCe-Eeec---cCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCC-
Confidence 9999 77776665 468876655 6655553 4444 4666788999999 666554 555678899998765211
Q ss_pred eeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCC
Q 019117 211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP 288 (346)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 288 (346)
....+ .+.. .+..|+ |++++..+.++ +.+||+.+++.. .+. ...
T Consensus 327 ---------------------~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~-------~lt--~~~ 372 (429)
T PRK01742 327 ---------------------GASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTE-------VLS--STF 372 (429)
T ss_pred ---------------------CeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE-------Eec--CCC
Confidence 00111 1222 234565 78888877765 556999876521 110 111
Q ss_pred CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC--CCCcceeee-eeeeEEEEEecCC
Q 019117 289 ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ--SSPPVLIAR-LICFSLHVKYNPQ 343 (346)
Q Consensus 289 ~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~-~~~~~~~~~~spd 343 (346)
......|+||+ ++|+.++.++.+.+|++. ++....... ..+.+...+|||-
T Consensus 373 --~~~~~~~sPdG--~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 373 --LDESPSISPNG--IMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred --CCCCceECCCC--CEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 22457899999 688888888988888764 354433332 3455778999985
No 213
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.71 E-value=2e-14 Score=118.86 Aligned_cols=284 Identities=15% Similarity=0.108 Sum_probs=165.2
Q ss_pred ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (346)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (346)
..+....+......-..++|+| +|+++.+++.|+ |.++|+.+.+.+..++. +.....+++ ++||+ +
T Consensus 25 t~~~~~~i~~~~~~h~~~~~s~----Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~------G~~~~~i~~--s~DG~-~ 91 (369)
T PF02239_consen 25 TNKVVARIPTGGAPHAGLKFSP----DGRYLYVANRDGTVSVIDLATGKVVATIKV------GGNPRGIAV--SPDGK-Y 91 (369)
T ss_dssp T-SEEEEEE-STTEEEEEE-TT-----SSEEEEEETTSEEEEEETTSSSEEEEEE-------SSEEEEEEE----TTT-E
T ss_pred CCeEEEEEcCCCCceeEEEecC----CCCEEEEEcCCCeEEEEECCcccEEEEEec------CCCcceEEE--cCCCC-E
Confidence 3555666655444444577888 788888888777 99999999998888873 333444554 49999 6
Q ss_pred EEEe-ecCCeEEEEEccCcceeeeeccC-------CCceEEEEEeCCCCc-eEEEeeCCCCEEEEecCCCeeEE--Eecc
Q 019117 101 LVAG-GINGIIRVIDVSNEKLHKSFVGH-------GDSINEIRTQPLKPS-LVVSASKDESVRLWNVQTGICIL--IFAG 169 (346)
Q Consensus 101 l~~~-~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~--~~~~ 169 (346)
++++ ...+.+.++|.++.+.++.+... ...+..+..+| ... ++++.-+.+.|.+-|....+.+. .+.
T Consensus 92 ~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~- 169 (369)
T PF02239_consen 92 VYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK- 169 (369)
T ss_dssp EEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-
T ss_pred EEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccccceeeec-
Confidence 6655 56899999999999988887643 34677888888 555 55555555888888877654432 332
Q ss_pred cCCCCcceEEEEecCCCCcEEEE-EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccc--eEEE
Q 019117 170 AGGHRNEVLSVDFHPSDIYRIAS-CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY--VDCN 246 (346)
Q Consensus 170 ~~~~~~~v~~~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~ 246 (346)
.........|+| ++++++. ......|-++|..+.+......... .....+...+ .|... +...
T Consensus 170 ---~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~---------~p~~~~~~~~-php~~g~vw~~ 235 (369)
T PF02239_consen 170 ---VGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGK---------KPHPGPGANF-PHPGFGPVWAT 235 (369)
T ss_dssp -----TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SS---------SBEETTEEEE-EETTTEEEEEE
T ss_pred ---ccccccccccCc-ccceeeecccccceeEEEeeccceEEEEeeccc---------cccccccccc-cCCCcceEEee
Confidence 456677899999 7666554 5667789999988743321111000 0000111111 23322 2222
Q ss_pred EecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEE----cCCCcEEEEEcCC
Q 019117 247 RWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG----NREGKIFVWELQS 322 (346)
Q Consensus 247 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~----~~dg~i~iwd~~~ 322 (346)
.-.+...++.-....+.+||..+.+ .++++.....+ ..+..+|++ +++.+. ...+.|.++|.++
T Consensus 236 ~~~~~~~~~~ig~~~v~v~d~~~wk---------vv~~I~~~G~g-lFi~thP~s--~~vwvd~~~~~~~~~v~viD~~t 303 (369)
T PF02239_consen 236 SGLGYFAIPLIGTDPVSVHDDYAWK---------VVKTIPTQGGG-LFIKTHPDS--RYVWVDTFLNPDADTVQVIDKKT 303 (369)
T ss_dssp EBSSSSEEEEEE--TTT-STTTBTS---------EEEEEE-SSSS---EE--TT---SEEEEE-TT-SSHT-EEEEECCG
T ss_pred ccccceecccccCCccccchhhcCe---------EEEEEECCCCc-ceeecCCCC--ccEEeeccCCCCCceEEEEECcC
Confidence 2123333333344466678888776 67777776666 778889999 677776 5668999999999
Q ss_pred CCcceeeeeeee--EEEEEecCCCCC
Q 019117 323 SPPVLIARLICF--SLHVKYNPQSVY 346 (346)
Q Consensus 323 ~~~~~~~~~~~~--~~~~~~spdg~~ 346 (346)
.+....+..... +.++.|+|||++
T Consensus 304 l~~~~~i~~~~~~~~~h~ef~~dG~~ 329 (369)
T PF02239_consen 304 LKVVKTITPGPGKRVVHMEFNPDGKE 329 (369)
T ss_dssp TEEEE-HHHHHT--EEEEEE-TTSSE
T ss_pred cceeEEEeccCCCcEeccEECCCCCE
Confidence 865554443333 889999999974
No 214
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.70 E-value=5.1e-17 Score=138.17 Aligned_cols=198 Identities=21% Similarity=0.413 Sum_probs=151.0
Q ss_pred CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC
Q 019117 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG 161 (346)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 161 (346)
|...|+|..|. ..|. ++++|+.|..++||.+.++.++...++|.+.|+.++.+. +...+++++.|..|++|.+.++
T Consensus 189 H~naVyca~fD--rtg~-~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 189 HRNAVYCAIFD--RTGR-YIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWRLPDG 264 (1113)
T ss_pred hhhheeeeeec--cccc-eEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEecCCC
Confidence 67788887776 7898 999999999999999999999999999999999999998 8889999999999999999999
Q ss_pred eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccc-cceeeeeceeecCCCCCCCCccceeceEEEeecc
Q 019117 162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE-FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240 (346)
Q Consensus 162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (346)
.++..+. +|++.|++++|+| ..+.+.||++++||.+- ... ....+..+. ..
T Consensus 265 ~pvsvLr---ghtgavtaiafsP-----~~sss~dgt~~~wd~r~~~~~-------y~prp~~~~-------------~~ 316 (1113)
T KOG0644|consen 265 APVSVLR---GHTGAVTAIAFSP-----RASSSDDGTCRIWDARLEPRI-------YVPRPLKFT-------------EK 316 (1113)
T ss_pred chHHHHh---ccccceeeeccCc-----cccCCCCCceEeccccccccc-------cCCCCCCcc-------------cc
Confidence 9999999 8999999999999 33778899999999982 111 011111111 11
Q ss_pred cceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117 241 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (346)
Q Consensus 241 ~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw 318 (346)
+.+.++.|. +..+++++.|+.-..|.+.... .+...+.-+.++.|.. .+.++.-.+-.+.+|
T Consensus 317 ~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~---------------~~~~~lif~t~ssd~~-~~~~~ar~~~~~~vw 380 (1113)
T KOG0644|consen 317 DLVDSILFENNGDRFLTGSRDGEARNHEFEQLA---------------WRSNLLIFVTRSSDLS-SIVVTARNDHRLCVW 380 (1113)
T ss_pred cceeeeeccccccccccccCCcccccchhhHhh---------------hhccceEEEecccccc-ccceeeeeeeEeeee
Confidence 334455554 7789999999998888765322 1122222233333332 466777778889999
Q ss_pred EcCCCCcce
Q 019117 319 ELQSSPPVL 327 (346)
Q Consensus 319 d~~~~~~~~ 327 (346)
++.+|....
T Consensus 381 nl~~g~l~H 389 (1113)
T KOG0644|consen 381 NLYTGQLLH 389 (1113)
T ss_pred ecccchhhh
Confidence 999986543
No 215
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.69 E-value=2.2e-15 Score=115.74 Aligned_cols=213 Identities=18% Similarity=0.259 Sum_probs=157.6
Q ss_pred cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEec-cCceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCL-EGGVIAALQSYVDEDKEESFYTVSWACNVDGI 98 (346)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (346)
.+..+...++||.+.|++...-| ...-+.+.+.|. ++||--. .++....+..+ -..++. +.++.++..
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~----~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~----mP~~~~--~~~y~~e~~ 81 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIP----KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY----MPSPCS--AMEYVSESR 81 (404)
T ss_pred cchhhhhhhcCchhhhhhheecc----CCCCeEEccccceeeeEEeccccccCchhhhh----CCCCce--Eeeeeccce
Confidence 45567778899999999988888 446788888888 9999644 34444444422 223344 444447777
Q ss_pred cEEEEeecCCeEEEEEcc----CcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC--------------
Q 019117 99 PFLVAGGINGIIRVIDVS----NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT-------------- 160 (346)
Q Consensus 99 ~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-------------- 160 (346)
.|+.|-.+|++.-+.+. .....+.+..|...+..+-|+. ...++++.+.|..+.---.+.
T Consensus 82 -~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t 159 (404)
T KOG1409|consen 82 -RLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPAS 159 (404)
T ss_pred -EEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCC
Confidence 89999999999888653 3345667778999999999987 677888877776543111111
Q ss_pred ---------------------------CeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeee
Q 019117 161 ---------------------------GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEK 213 (346)
Q Consensus 161 ---------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 213 (346)
-.++..+. +|.+.+++++|.| ...++++|..|..+.+||+...
T Consensus 160 ~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~---~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~------ 229 (404)
T KOG1409|consen 160 ALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFN---GHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGR------ 229 (404)
T ss_pred CCceeeEEEEecccccceEEEEEeecCCceEEEEc---CcccceEEEEEcC-CCcEEEeccccCceEEEeccCC------
Confidence 12233444 7999999999998 8899999999999999999873
Q ss_pred ceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCC
Q 019117 214 SFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKE 271 (346)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~ 271 (346)
......+.+|.+.|..+.+. -+.+.+++.||.|.+|+.+...
T Consensus 230 ----------------~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 230 ----------------KGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred ----------------cceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 23455778899989888876 6789999999999999987543
No 216
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=3.6e-14 Score=110.01 Aligned_cols=248 Identities=17% Similarity=0.216 Sum_probs=158.3
Q ss_pred CCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 019117 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (346)
Q Consensus 33 ~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 111 (346)
...+..++|++ .-..||++..|. |++|+-.. .....++. ..+..|.+++|- |.+...|+.|...| |.
T Consensus 98 ~~dlr~~aWhq----H~~~fava~nddvVriy~kss-t~pt~Lks----~sQrnvtclawR--PlsaselavgCr~g-Ic 165 (445)
T KOG2139|consen 98 EIDLRGVAWHQ----HIIAFAVATNDDVVRIYDKSS-TCPTKLKS----VSQRNVTCLAWR--PLSASELAVGCRAG-IC 165 (445)
T ss_pred hcceeeEeech----hhhhhhhhccCcEEEEeccCC-CCCceecc----hhhcceeEEEec--cCCcceeeeeecce-eE
Confidence 34578899998 334566665555 99999555 44444443 366789999998 66655788888655 89
Q ss_pred EEEccCc----c----------eeeeeccCCCceEEEEEeCCCCceEEEee-CCCCEEEEecCCCeeEEEecccCCCCcc
Q 019117 112 VIDVSNE----K----------LHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDESVRLWNVQTGICILIFAGAGGHRNE 176 (346)
Q Consensus 112 iwd~~~~----~----------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 176 (346)
+|..... + .+...++| .+|+++.|++ ++..+++++ .|..|.|||..++..+.... .-.+.
T Consensus 166 iW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~---~glgg 240 (445)
T KOG2139|consen 166 IWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIP---KGLGG 240 (445)
T ss_pred EEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccc---cCCCc
Confidence 9986431 1 12223445 6899999999 777777776 46789999999988776553 25677
Q ss_pred eEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEE
Q 019117 177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL 254 (346)
Q Consensus 177 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~ 254 (346)
+.-+.|+| ++.+|+.+.-|+..++|....... ......-++.|..-.|+ |.+|+
T Consensus 241 ~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt-----------------------~erw~lgsgrvqtacWspcGsfLL 296 (445)
T KOG2139|consen 241 FSLLKWSP-DGDVLFAATCDAVFRLWQENQSWT-----------------------KERWILGSGRVQTACWSPCGSFLL 296 (445)
T ss_pred eeeEEEcC-CCCEEEEecccceeeeehhcccce-----------------------ecceeccCCceeeeeecCCCCEEE
Confidence 88999999 999999999999999996655221 11122234477777887 55443
Q ss_pred -EEeecCeEEEEcCCCCCCCCCCc------------cccccccccC---CCcCeeEEEEeecCCcceEEEEcCCC-----
Q 019117 255 -SKSVDNEIVLWEPKMKEQSPGEG------------TADILQKYPV---PECDIWFIKFSCDFHYNAAAIGNREG----- 313 (346)
Q Consensus 255 -~~~~d~~i~iwd~~~~~~~~~~~------------~~~~~~~~~~---~~~~v~~~~~s~~~~~~~l~~~~~dg----- 313 (346)
+.+.. -++|.+.-........ ....+....+ -.+.+.+++|.|.| .+||+.-..+
T Consensus 297 f~~sgs--p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG--eyLav~fKg~~~v~~ 372 (445)
T KOG2139|consen 297 FACSGS--PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG--EYLAVIFKGQSFVLL 372 (445)
T ss_pred EEEcCC--ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCC--CEEEEEEcCCchhhh
Confidence 33333 2344332221110000 0000011111 24678999999999 6788765433
Q ss_pred ---cEEEEEcCCCCc
Q 019117 314 ---KIFVWELQSSPP 325 (346)
Q Consensus 314 ---~i~iwd~~~~~~ 325 (346)
.|.+||.....+
T Consensus 373 ~k~~i~~fdtr~sp~ 387 (445)
T KOG2139|consen 373 CKLHISRFDTRKSPP 387 (445)
T ss_pred hhhhhhhhcccccCc
Confidence 366777765543
No 217
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=6.1e-15 Score=125.84 Aligned_cols=219 Identities=13% Similarity=0.101 Sum_probs=139.9
Q ss_pred eecccCCCceEEEEEEeecCCCccEEEEEcCC----cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGN----RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (346)
Q Consensus 27 ~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~----~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 102 (346)
+.+..|...+...+|+| +|+.||.++.+ .|.+||+.++.... +..+. ......+| +|||+ .|+
T Consensus 197 ~~lt~~~~~v~~p~wSP----DG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~-----g~~~~~~w--SPDG~-~La 263 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSP----DGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFR-----GHNGAPAF--SPDGS-RLA 263 (429)
T ss_pred eEeccCCCccccceEcC----CCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCC-----CccCceeE--CCCCC-EEE
Confidence 34567888899999999 78888877543 29999987765422 22211 11223445 59998 666
Q ss_pred Ee-ecCCeEEEE--EccCcceeeeeccCCCceEEEEEeCCCCceEE-EeeCCCCEEEEecCCC-eeEEEecccCCCCcce
Q 019117 103 AG-GINGIIRVI--DVSNEKLHKSFVGHGDSINEIRTQPLKPSLVV-SASKDESVRLWNVQTG-ICILIFAGAGGHRNEV 177 (346)
Q Consensus 103 ~~-~~dg~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v 177 (346)
.+ +.+|.+.|| |+.+++. ..+..+...+....|+| ++..|+ ++..++...||++... .....+. +..
T Consensus 264 ~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~----~~~-- 335 (429)
T PRK01742 264 FASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLVG----GRG-- 335 (429)
T ss_pred EEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEec----CCC--
Confidence 65 467876665 5555553 44555777788999999 666655 4456788888887532 2222222 333
Q ss_pred EEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEE
Q 019117 178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS 255 (346)
Q Consensus 178 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~ 255 (346)
....|+| +++.++..+.++ +.+||+.+.... .+... ....+..|+ |++|+.
T Consensus 336 ~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g~~~------------------------~lt~~-~~~~~~~~sPdG~~i~~ 388 (429)
T PRK01742 336 YSAQISA-DGKTLVMINGDN-VVKQDLTSGSTE------------------------VLSST-FLDESPSISPNGIMIIY 388 (429)
T ss_pred CCccCCC-CCCEEEEEcCCC-EEEEECCCCCeE------------------------EecCC-CCCCCceECCCCCEEEE
Confidence 4578999 888887777655 556898773211 00000 011234565 889999
Q ss_pred EeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeec
Q 019117 256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD 300 (346)
Q Consensus 256 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 300 (346)
++.++.+.+|++.... ......+..|.+.+...+|+|-
T Consensus 389 ~s~~g~~~~l~~~~~~-------G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 389 SSTQGLGKVLQLVSAD-------GRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEcCCCceEEEEEECC-------CCceEEccCCCCCCCCcccCCC
Confidence 9999988888764311 1156666777778888899874
No 218
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.66 E-value=3.2e-14 Score=107.21 Aligned_cols=259 Identities=14% Similarity=0.150 Sum_probs=170.6
Q ss_pred CCceEEEEEEeecCCCcc-EEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeE
Q 019117 33 KRPLYAVVFNFIDSRYFN-VFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII 110 (346)
Q Consensus 33 ~~~v~~~~~~p~~~~~~~-~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 110 (346)
.+.++.+.|.-. +.+|. .++-+...+ |.+|..........+...... .-..+.+++..+++.+. .++++..+|.+
T Consensus 69 ts~~~dm~w~~~-~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~-ki~~~~~lslD~~~~~~-~i~vs~s~G~~ 145 (339)
T KOG0280|consen 69 TSTEFDMLWRIR-ETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSK-KISVVEALSLDISTSGT-KIFVSDSRGSI 145 (339)
T ss_pred ccccceeeeeec-cCCccceeeeccccceEEEEeeccceeeeeecccchh-hhhheeeeEEEeeccCc-eEEEEcCCCcE
Confidence 455777788752 23455 455555555 888887665555555443221 11222356666668888 78899889999
Q ss_pred EEEEccCcce--eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC-CeeEEEecccCCCCcceEEEEecCCCC
Q 019117 111 RVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT-GICILIFAGAGGHRNEVLSVDFHPSDI 187 (346)
Q Consensus 111 ~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~ 187 (346)
.+-+...... ++..+.|.-++...+|+..+++++.+|++|+.+..||++. ++.+.. ...-|...|.++.-+|..+
T Consensus 146 ~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~--n~kvH~~GV~SI~ss~~~~ 223 (339)
T KOG0280|consen 146 SGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH--NSKVHTSGVVSIYSSPPKP 223 (339)
T ss_pred EEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee--cceeeecceEEEecCCCCC
Confidence 9666555543 4478899999999999988889999999999999999993 333332 2225889999999998788
Q ss_pred cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEeecCeEEE
Q 019117 188 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVL 264 (346)
Q Consensus 188 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~i 264 (346)
.++++|+.|-.|++||.|+... |++... -.+.|..+.++ ...++.++.-+-.+|
T Consensus 224 ~~I~TGsYDe~i~~~DtRnm~k----------------------Pl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki 280 (339)
T KOG0280|consen 224 TYIATGSYDECIRVLDTRNMGK----------------------PLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKI 280 (339)
T ss_pred ceEEEeccccceeeeehhcccC----------------------ccccCc-cccceEEEEecchhhhHHHHHHHhcCceE
Confidence 9999999999999999997432 222222 12567777766 223344444444677
Q ss_pred EcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc-CCCcEE-EEEcCCCCc
Q 019117 265 WEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-REGKIF-VWELQSSPP 325 (346)
Q Consensus 265 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~-iwd~~~~~~ 325 (346)
-+....... ....+...+.|.+-...-.|..-. .+|++|+ .|..++ +|-.-++++
T Consensus 281 ~~~~~~~~e----~~~~~~s~~~hdSl~YG~DWd~~~--~~lATCsFYDk~~~~~Wl~~t~~~ 337 (339)
T KOG0280|consen 281 LDSSDKVLE----FQIVLPSDKIHDSLCYGGDWDSKD--SFLATCSFYDKKIRQLWLHITGEP 337 (339)
T ss_pred EEecccccc----hheeeeccccccceeecccccccc--ceeeeeeccccceeeeeeeccCCc
Confidence 776655321 111344555666655556663222 4688876 577755 786666553
No 219
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=9.2e-14 Score=118.37 Aligned_cols=231 Identities=10% Similarity=0.020 Sum_probs=138.7
Q ss_pred EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee---cCCeEEEEEccCcceeeeeccCCCceEEEEE
Q 019117 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG---INGIIRVIDVSNEKLHKSFVGHGDSINEIRT 136 (346)
Q Consensus 60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 136 (346)
|.++|...... +.+.. ....+...+|+ |||+ .|+..+ .+..|.+|++.+++.... ....+.+....|
T Consensus 181 l~~~d~dg~~~-~~lt~-----~~~~~~~p~wS--PDG~-~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~ 250 (429)
T PRK03629 181 LRVSDYDGYNQ-FVVHR-----SPQPLMSPAWS--PDGS-KLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAF 250 (429)
T ss_pred EEEEcCCCCCC-EEeec-----CCCceeeeEEc--CCCC-EEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEE
Confidence 77888654433 22321 33455556666 9998 666543 245799999988764332 222333457899
Q ss_pred eCCCCceEEE-eeCCC--CEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEec-CCeEEEEE--cccccee
Q 019117 137 QPLKPSLVVS-ASKDE--SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-DNTVKIWS--MKEFWTY 210 (346)
Q Consensus 137 ~~~~~~~l~s-~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~iwd--~~~~~~~ 210 (346)
+| +++.|+. .+.+| .|.+||+.+++...... +...+....|+| +++.|+..+. ++...+|. +....
T Consensus 251 SP-DG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~----~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~-- 322 (429)
T PRK03629 251 SP-DGSKLAFALSKTGSLNLYVMDLASGQIRQVTD----GRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGA-- 322 (429)
T ss_pred CC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEccC----CCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCC--
Confidence 99 6766654 44455 48899998876554433 445678899999 7776655544 45556664 43311
Q ss_pred eeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeec---CeEEEEcCCCCCCCCCCccccccccc
Q 019117 211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD---NEIVLWEPKMKEQSPGEGTADILQKY 285 (346)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~ 285 (346)
...+..+........|+ |++++..+.+ ..|.+||+.+++. ..+
T Consensus 323 ----------------------~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~----------~~L 370 (429)
T PRK03629 323 ----------------------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV----------QVL 370 (429)
T ss_pred ----------------------eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe----------EEe
Confidence 11222233334456666 7777766543 3588899887652 111
Q ss_pred cCCCcCeeEEEEeecCCcceEEEEcCCCc---EEEEEcCCCCcceeeeeeeeEEEEEecCC
Q 019117 286 PVPECDIWFIKFSCDFHYNAAAIGNREGK---IFVWELQSSPPVLIARLICFSLHVKYNPQ 343 (346)
Q Consensus 286 ~~~~~~v~~~~~s~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~spd 343 (346)
... .......|+||| ++|+..+.++. +.++++..+.........+.+...+|+|-
T Consensus 371 t~~-~~~~~p~~SpDG--~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 371 TDT-FLDETPSIAPNG--TMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CCC-CCCCCceECCCC--CEEEEEEcCCCceEEEEEECCCCCeEECccCCCCcCCcccCCC
Confidence 111 122356899999 56777776654 77888855544333344566778999983
No 220
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=2.1e-13 Score=103.97 Aligned_cols=169 Identities=17% Similarity=0.281 Sum_probs=128.5
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEec-cCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCL-EGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (346)
.+++.++ ....+|.+|.+.+ ..+++.-.+.|.||... ..+.+..+..... .... ++.+...+.. +|
T Consensus 85 ~~~i~el-~f~~~I~~V~l~r------~riVvvl~~~I~VytF~~n~k~l~~~et~~N---PkGl--C~~~~~~~k~-~L 151 (346)
T KOG2111|consen 85 ERCIIEL-SFNSEIKAVKLRR------DRIVVVLENKIYVYTFPDNPKLLHVIETRSN---PKGL--CSLCPTSNKS-LL 151 (346)
T ss_pred CcEEEEE-EeccceeeEEEcC------CeEEEEecCeEEEEEcCCChhheeeeecccC---CCce--EeecCCCCce-EE
Confidence 3444443 2567899999986 78888888999999987 3445555544321 1222 3333223333 44
Q ss_pred EE-eecCCeEEEEEccCcce--eeeeccCCCceEEEEEeCCCCceEEEeeCCCC-EEEEecCCCeeEEEecccCCCCcce
Q 019117 102 VA-GGINGIIRVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSASKDES-VRLWNVQTGICILIFAGAGGHRNEV 177 (346)
Q Consensus 102 ~~-~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~v 177 (346)
|. |-.-|.|+|-|+...+. ...+.+|...|.|++.+. .+..+||+|..|+ |+|||..+|+.+.+++.. .....|
T Consensus 152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG-~d~A~i 229 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRG-VDRADI 229 (346)
T ss_pred EcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecC-CchheE
Confidence 44 44569999999977665 477889999999999999 8999999999997 699999999999999853 245689
Q ss_pred EEEEecCCCCcEEEEEecCCeEEEEEcccc
Q 019117 178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEF 207 (346)
Q Consensus 178 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 207 (346)
.+++|+| +..+|++++..|+++||.++..
T Consensus 230 y~iaFSp-~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 230 YCIAFSP-NSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEeCC-CccEEEEEcCCCeEEEEEeecC
Confidence 9999999 9999999999999999999873
No 221
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.66 E-value=1.2e-14 Score=111.86 Aligned_cols=267 Identities=18% Similarity=0.222 Sum_probs=169.1
Q ss_pred CCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCce-----eeeEeeeecC-------CCccceEEEEEEEcCCCCc
Q 019117 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV-----IAALQSYVDE-------DKEESFYTVSWACNVDGIP 99 (346)
Q Consensus 33 ~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~-----~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~ 99 (346)
.+-|.+|.|.. +|.+||+|..+| |.+|.-..... ...++.+..+ .-.+.|..+.|....+..
T Consensus 25 adiis~vef~~----~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a- 99 (433)
T KOG1354|consen 25 ADIISAVEFDH----YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA- 99 (433)
T ss_pred hcceeeEEeec----ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc-
Confidence 45688999998 899999999998 88887543321 1222222111 124678888898544445
Q ss_pred EEEEeecCCeEEEEEccCcce-----------------------------------eeee-ccCCCceEEEEEeCCCCce
Q 019117 100 FLVAGGINGIIRVIDVSNEKL-----------------------------------HKSF-VGHGDSINEIRTQPLKPSL 143 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~~-----------------------------------~~~~-~~~~~~v~~~~~~~~~~~~ 143 (346)
.++....|.+|++|.+..... .+.+ .+|+--|+++.++. +...
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et 178 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKET 178 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccce
Confidence 666777899999998743211 1111 24777899999998 7777
Q ss_pred EEEeeCCCCEEEEecCCCeeEEEecccCCC-----CcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeec
Q 019117 144 VVSASKDESVRLWNVQTGICILIFAGAGGH-----RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT 218 (346)
Q Consensus 144 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 218 (346)
++++. |=.|.+|+++-......+.....+ ..-|++..|+|...++++-.+..|+|++.|++....-......+.
T Consensus 179 ~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 179 FLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred Eeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence 77754 688999998743322222111122 356889999997788888889999999999996211100000000
Q ss_pred CCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCC-------
Q 019117 219 DLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE------- 289 (346)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------- 289 (346)
. ...+....-+..--..|..+.|+ |+++++-.. -+|++||++.... ++..++.|.
T Consensus 258 e-------pedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~--------pv~t~~vh~~lr~kLc 321 (433)
T KOG1354|consen 258 E-------PEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAK--------PVETYPVHEYLRSKLC 321 (433)
T ss_pred c-------ccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCC--------cceEEeehHhHHHHHH
Confidence 0 00000111122223457778888 788887554 5899999965442 333333332
Q ss_pred -----c---CeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 290 -----C---DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 290 -----~---~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
. .-..++|+-++ .++++|+..+.++++++..|.
T Consensus 322 ~lYEnD~IfdKFec~~sg~~--~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 322 SLYENDAIFDKFECSWSGND--SYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred HHhhccchhheeEEEEcCCc--ceEecccccceEEEecCCCCc
Confidence 1 12456788777 799999999999999977665
No 222
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=3.3e-13 Score=104.77 Aligned_cols=269 Identities=13% Similarity=0.123 Sum_probs=158.2
Q ss_pred CCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceee---------eEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117 32 GKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIA---------ALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (346)
Q Consensus 32 h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 102 (346)
.+..|+|++|-|. .+.-|+.|...+|.+|......... ..+.+..+.| ..|+.+.|. +||. .++
T Consensus 139 sQrnvtclawRPl---saselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn--~dgt-~l~ 211 (445)
T KOG2139|consen 139 SQRNVTCLAWRPL---SASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWN--EDGT-ILV 211 (445)
T ss_pred hhcceeEEEeccC---CcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEc--CCCC-EEe
Confidence 3567999999994 4579999999999999865322111 1222233333 677888887 8898 777
Q ss_pred Eeec-CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117 103 AGGI-NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 181 (346)
Q Consensus 103 ~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 181 (346)
+++. |..|.|||.+++..+.......+.+.-+.|+| ++.+|+++.-|+..++|+........... --.+.|...+
T Consensus 212 tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~---lgsgrvqtac 287 (445)
T KOG2139|consen 212 TASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWI---LGSGRVQTAC 287 (445)
T ss_pred ecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceeccee---ccCCceeeee
Confidence 7764 67899999999987766655667899999999 88999999999999999654332222222 2445999999
Q ss_pred ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEE---EeecccceEEEEec--CCEEEEE
Q 019117 182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI---ASVHSNYVDCNRWL--GDFILSK 256 (346)
Q Consensus 182 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~--~~~l~~~ 256 (346)
|+|.+..+|++++. .-++|.+........... .............+. +.. ...--+.+.+++|+ |.+|++.
T Consensus 288 WspcGsfLLf~~sg--sp~lysl~f~~~~~~~~~-~~~~k~~lliaDL~e-~ti~ag~~l~cgeaq~lawDpsGeyLav~ 363 (445)
T KOG2139|consen 288 WSPCGSFLLFACSG--SPRLYSLTFDGEDSVFLR-PQSIKRVLLIADLQE-VTICAGQRLCCGEAQCLAWDPSGEYLAVI 363 (445)
T ss_pred ecCCCCEEEEEEcC--CceEEEEeecCCCccccC-cccceeeeeeccchh-hhhhcCcccccCccceeeECCCCCEEEEE
Confidence 99955556666664 445555543211111000 000000000000000 000 01123567889998 8898887
Q ss_pred eecC--------eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecC-CcceEEEEcCCCcEEEEEcC
Q 019117 257 SVDN--------EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF-HYNAAAIGNREGKIFVWELQ 321 (346)
Q Consensus 257 ~~d~--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~~~l~~~~~dg~i~iwd~~ 321 (346)
-..+ .|.+||.+..-..... ...+.+. .....++|+|.. ++.+|..+=..|.+.-|++.
T Consensus 364 fKg~~~v~~~k~~i~~fdtr~sp~vels-----~cg~i~g-e~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 364 FKGQSFVLLCKLHISRFDTRKSPPVELS-----YCGMIGG-EYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EcCCchhhhhhhhhhhhcccccCceEEE-----ecccccC-CCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 5433 3666776643210000 0011111 124556777643 22466666566777766653
No 223
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=4.7e-14 Score=115.65 Aligned_cols=269 Identities=12% Similarity=0.042 Sum_probs=178.0
Q ss_pred cCCCceEEEEEEeecCCCccEEEEEcC-Cc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117 31 EGKRPLYAVVFNFIDSRYFNVFATVGG-NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (346)
Q Consensus 31 ~h~~~v~~~~~~p~~~~~~~~la~~~~-~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 108 (346)
+|...-+.|..+| ||+++.+.+. .- |++||+..... .+..+. ..+.|...-++ .|-. .++.-..|.
T Consensus 49 e~p~ast~ik~s~----DGqY~lAtG~YKP~ikvydlanLSL--KFERhl---Dae~V~feiLs--DD~S-K~v~L~~DR 116 (703)
T KOG2321|consen 49 EMPTASTRIKVSP----DGQYLLATGTYKPQIKVYDLANLSL--KFERHL---DAEVVDFEILS--DDYS-KSVFLQNDR 116 (703)
T ss_pred CCccccceeEecC----CCcEEEEecccCCceEEEEccccee--eeeecc---cccceeEEEec--cchh-hheEeecCc
Confidence 5777888999999 7777655544 43 99999875433 222221 11222222222 2333 455556677
Q ss_pred eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCc
Q 019117 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY 188 (346)
Q Consensus 109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 188 (346)
.|.+... -|... .++ -...-.+++++.....+++.|+ ...|+-++++.|+.+..+. ...+.++++..++ ...
T Consensus 117 ~IefHak-~G~hy-~~R-IP~~GRDm~y~~~scDly~~gs-g~evYRlNLEqGrfL~P~~---~~~~~lN~v~in~-~hg 188 (703)
T KOG2321|consen 117 TIEFHAK-YGRHY-RTR-IPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQGRFLNPFE---TDSGELNVVSINE-EHG 188 (703)
T ss_pred eeeehhh-cCeee-eee-cCcCCccccccCCCccEEEeec-CcceEEEEccccccccccc---cccccceeeeecC-ccc
Confidence 7776542 23221 111 1223456666653444554444 4578889999999999998 4668999999998 888
Q ss_pred EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc-----ceEEEEec--CCEEEEEeecCe
Q 019117 189 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN-----YVDCNRWL--GDFILSKSVDNE 261 (346)
Q Consensus 189 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~--~~~l~~~~~d~~ 261 (346)
+|++|+.+|.|.+||.+........ ........|+. .|+++.|+ |-.+++|..+|.
T Consensus 189 Lla~Gt~~g~VEfwDpR~ksrv~~l-----------------~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~ 251 (703)
T KOG2321|consen 189 LLACGTEDGVVEFWDPRDKSRVGTL-----------------DAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS 251 (703)
T ss_pred eEEecccCceEEEecchhhhhheee-----------------ecccccCCCccccccCcceEEEecCCceeEEeeccCCc
Confidence 9999999999999999983211000 00111222333 39999998 668999999999
Q ss_pred EEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEec
Q 019117 262 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYN 341 (346)
Q Consensus 262 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s 341 (346)
|.|||+++.++ .+..-.+..-+|..+.|-+.++...+++. ....++|||-.+|++.........++.+++-
T Consensus 252 v~iyDLRa~~p--------l~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~ 322 (703)
T KOG2321|consen 252 VLIYDLRASKP--------LLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFV 322 (703)
T ss_pred EEEEEcccCCc--------eeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccCCcCceeee
Confidence 99999999874 33333344568888999877543556654 4568999999999987777776667888887
Q ss_pred CCCC
Q 019117 342 PQSV 345 (346)
Q Consensus 342 pdg~ 345 (346)
|++.
T Consensus 323 p~sG 326 (703)
T KOG2321|consen 323 PGSG 326 (703)
T ss_pred cCCc
Confidence 7753
No 224
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=5.6e-14 Score=109.87 Aligned_cols=202 Identities=13% Similarity=0.096 Sum_probs=147.7
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCc----eeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGG----VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 105 (346)
.....+|..++.. ++.+++..+++.+.+|....+. .+..+. ....+..+.-. +....++++|+
T Consensus 102 ~l~~~~I~gl~~~-----dg~Litc~~sG~l~~~~~k~~d~hss~l~~la------~g~g~~~~r~~--~~~p~Iva~GG 168 (412)
T KOG3881|consen 102 SLGTKSIKGLKLA-----DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLA------TGPGLYDVRQT--DTDPYIVATGG 168 (412)
T ss_pred ccccccccchhhc-----CCEEEEEecCCcEEEEeccCCccccccceeee------cCCceeeeccC--CCCCceEecCc
Confidence 4455667777765 4555555555559999987443 222222 22334434433 44554777799
Q ss_pred cC--CeEEEEEccCcceeeeeccC---------CCceEEEEEeCCC--CceEEEeeCCCCEEEEecCCC-eeEEEecccC
Q 019117 106 IN--GIIRVIDVSNEKLHKSFVGH---------GDSINEIRTQPLK--PSLVVSASKDESVRLWNVQTG-ICILIFAGAG 171 (346)
Q Consensus 106 ~d--g~i~iwd~~~~~~~~~~~~~---------~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~ 171 (346)
.. ..+.|||+.+.+.+..-+.- .-.++++.|-+ + ...|++++.-+.|++||.+.+ +++..+.
T Consensus 169 ke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd--- 244 (412)
T KOG3881|consen 169 KENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFD--- 244 (412)
T ss_pred hhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCcccCcceeEec---
Confidence 88 89999999988665543321 12567899988 6 789999999999999999865 5677776
Q ss_pred CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--
Q 019117 172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-- 249 (346)
Q Consensus 172 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 249 (346)
-.+.+++++...| +++++++|..-+.+..||++.... ....+.+-.+.|+++..+
T Consensus 245 ~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl----------------------~g~~~kg~tGsirsih~hp~ 301 (412)
T KOG3881|consen 245 FLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKL----------------------LGCGLKGITGSIRSIHCHPT 301 (412)
T ss_pred cccCcceeeeecC-CCcEEEEecccchhheecccCcee----------------------eccccCCccCCcceEEEcCC
Confidence 4678999999999 999999999999999999998322 222356667788888887
Q ss_pred CCEEEEEeecCeEEEEcCCCCC
Q 019117 250 GDFILSKSVDNEIVLWEPKMKE 271 (346)
Q Consensus 250 ~~~l~~~~~d~~i~iwd~~~~~ 271 (346)
..+++++|-|..|||+|+.+.+
T Consensus 302 ~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 302 HPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred CceEEeeccceeEEEeecccch
Confidence 4599999999999999999865
No 225
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.65 E-value=1.4e-13 Score=122.37 Aligned_cols=285 Identities=16% Similarity=0.068 Sum_probs=177.2
Q ss_pred ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEecc--CceeeeEeeeecCCCc-c-ceEEEEEEEcCC
Q 019117 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE--GGVIAALQSYVDEDKE-E-SFYTVSWACNVD 96 (346)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~--~~~~~~~~~~~~~~~~-~-~v~~~~~~~~~~ 96 (346)
.++...++..-..++.++...+ .++.+|.++.|| |.+.++.. .......+......+. + .|...++.....
T Consensus 1087 s~rS~ltys~~~sr~~~vt~~~----~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~ 1162 (1431)
T KOG1240|consen 1087 SARSELTYSPEGSRVEKVTMCG----NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQ 1162 (1431)
T ss_pred eeeeeEEEeccCCceEEEEecc----CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeeccccccc
Confidence 4444455544567888888888 778999999999 88888765 2222222222212122 2 223333332222
Q ss_pred CCcEEEEeecCCeEEEEEccCcceeeeec--cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC
Q 019117 97 GIPFLVAGGINGIIRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR 174 (346)
Q Consensus 97 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 174 (346)
. ..|+.+...+.|..||+........++ ...+.|++++.+| .+++++.|...|.+.+||++-+.++..+.. ++.
T Consensus 1163 S-~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~--P~~ 1238 (1431)
T KOG1240|consen 1163 S-HVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEH--PAR 1238 (1431)
T ss_pred c-eeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccC--ccc
Confidence 2 378888889999999998876555443 2457899999999 888999999999999999999988888764 456
Q ss_pred cceEEEEecCCCC--cEEEEEe--cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-
Q 019117 175 NEVLSVDFHPSDI--YRIASCG--MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL- 249 (346)
Q Consensus 175 ~~v~~~~~~~~~~--~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 249 (346)
.+++.+..+|... ...++++ ..+.|.+|++.++......-.. .....+....... .....+.-......+.
T Consensus 1239 ~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s--~~~p~ls~~~Ps~--~~~kp~~~~~~~~~~~~ 1314 (1431)
T KOG1240|consen 1239 APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS--DGAPILSYALPSN--DARKPDSLAGISCGVCE 1314 (1431)
T ss_pred CCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcC--CCCcchhhhcccc--cCCCCCcccceeeeccc
Confidence 7888888876332 4455544 4678999999985432221111 0000000000000 0000111111222222
Q ss_pred -CCEEEEEeecCeEEEEcCCCCCCCCC--------------------Cc----------------c------cccc----
Q 019117 250 -GDFILSKSVDNEIVLWEPKMKEQSPG--------------------EG----------------T------ADIL---- 282 (346)
Q Consensus 250 -~~~l~~~~~d~~i~iwd~~~~~~~~~--------------------~~----------------~------~~~~---- 282 (346)
+..+++|+.|..|+.||....+.... .. . ...+
T Consensus 1315 ~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~ 1394 (1431)
T KOG1240|consen 1315 KNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGP 1394 (1431)
T ss_pred CCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCC
Confidence 67999999999999999876543200 00 0 0000
Q ss_pred -ccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117 283 -QKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (346)
Q Consensus 283 -~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd 319 (346)
..-..|...|+++++....+ .+|++++.||.|+||.
T Consensus 1395 ~~ps~~H~d~Itdma~~~~~q-~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1395 SDPSTYHHDPITDMATLKSEQ-PLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred CCCcccccchhhhhhhhccCc-cEEEEecCCCeeeecC
Confidence 01122667899998888775 6999999999999994
No 226
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.64 E-value=1.7e-14 Score=117.27 Aligned_cols=240 Identities=16% Similarity=0.207 Sum_probs=170.5
Q ss_pred CccEEEEEcCCcEEEEEeccCceee-eEeeeecCCCccceEEEEEE---EcCCCCcEEEEeecCCeEEEEEccCcceeee
Q 019117 48 YFNVFATVGGNRVTVYQCLEGGVIA-ALQSYVDEDKEESFYTVSWA---CNVDGIPFLVAGGINGIIRVIDVSNEKLHKS 123 (346)
Q Consensus 48 ~~~~la~~~~~~v~i~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~---~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 123 (346)
.|+.|+-.-.+.+.+|+...+..+. .+..... ......+-.|. -.+.+- -++.|-..|.|.+.|....+..+.
T Consensus 134 ~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y--~gt~P~cHdfn~~~a~~~g~-dllIGf~tGqvq~idp~~~~~skl 210 (636)
T KOG2394|consen 134 KGDRLCFNVGRELYVYSYRGAADLSKPIDKREY--KGTSPTCHDFNSFTATPKGL-DLLIGFTTGQVQLIDPINFEVSKL 210 (636)
T ss_pred CCCEEEEecCCeEEEEEccCcchhccchhhhcc--cCCCCceecccccccCCCCc-ceEEeeccCceEEecchhhHHHHh
Confidence 6778888877789999877432221 1111111 12222333332 124555 677888889999999766433222
Q ss_pred ec----cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC--------------C--------------eeEEEecccC
Q 019117 124 FV----GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT--------------G--------------ICILIFAGAG 171 (346)
Q Consensus 124 ~~----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--------------~--------------~~~~~~~~~~ 171 (346)
+. -....|+++.|-|.+...|+.+..+|.+.++|... + .++..+.
T Consensus 211 fne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~--- 287 (636)
T KOG2394|consen 211 FNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWH--- 287 (636)
T ss_pred hhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeE---
Confidence 21 13478999999997778888999999999997641 1 1111111
Q ss_pred CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--
Q 019117 172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-- 249 (346)
Q Consensus 172 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 249 (346)
--.+.|..++|+| ++.+|++.+.||.++|||..+ +..+-.+...-+...|++|+
T Consensus 288 ~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt-----------------------~eLlg~mkSYFGGLLCvcWSPD 343 (636)
T KOG2394|consen 288 IGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDT-----------------------QELLGVMKSYFGGLLCVCWSPD 343 (636)
T ss_pred eccccccceeEcC-CCceEEEEecCceEEEeeccH-----------------------HHHHHHHHhhccceEEEEEcCC
Confidence 1235788999999 999999999999999999998 23333455566789999999
Q ss_pred CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeec-----------------------------
Q 019117 250 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD----------------------------- 300 (346)
Q Consensus 250 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----------------------------- 300 (346)
|+++++|++|.-|.||.+...+ .+..-.+|..+|..++|.|-
T Consensus 344 GKyIvtGGEDDLVtVwSf~erR---------VVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~ 414 (636)
T KOG2394|consen 344 GKYIVTGGEDDLVTVWSFEERR---------VVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRAN 414 (636)
T ss_pred ccEEEecCCcceEEEEEeccce---------EEEeccccccceeeEeecccccccccccccccccccccchhcccccccC
Confidence 8999999999999999999877 78888899999999999831
Q ss_pred --CC---------------cceEEEEcCCCcEEEEEcCCCCcc
Q 019117 301 --FH---------------YNAAAIGNREGKIFVWELQSSPPV 326 (346)
Q Consensus 301 --~~---------------~~~l~~~~~dg~i~iwd~~~~~~~ 326 (346)
+. .-.+.+.+.|-.+.+||+....+.
T Consensus 415 ~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~ 457 (636)
T KOG2394|consen 415 GTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLV 457 (636)
T ss_pred CCCCcCCCcccccccccceEEEeecccccceEEEEecchhhcc
Confidence 00 015778889999999999876543
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.5e-13 Score=117.63 Aligned_cols=230 Identities=11% Similarity=0.012 Sum_probs=137.7
Q ss_pred EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec---CCeEEEEEccCcceeeeeccCCCceEEEEE
Q 019117 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI---NGIIRVIDVSNEKLHKSFVGHGDSINEIRT 136 (346)
Q Consensus 60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 136 (346)
|.+||... ...+.+.. +...+...+|+ |||+ .|+..+. +..|.+||+.+++... +....+.....+|
T Consensus 186 l~i~D~~g-~~~~~lt~-----~~~~v~~p~wS--pDg~-~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~ 255 (433)
T PRK04922 186 LQVADSDG-YNPQTILR-----SAEPILSPAWS--PDGK-KLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSF 255 (433)
T ss_pred EEEECCCC-CCceEeec-----CCCccccccCC--CCCC-EEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceE
Confidence 88888643 33333332 34456556665 9998 7777653 3469999998876533 3334445568899
Q ss_pred eCCCCceE-EEeeCCC--CEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe-cCCe--EEEEEcccccee
Q 019117 137 QPLKPSLV-VSASKDE--SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNT--VKIWSMKEFWTY 210 (346)
Q Consensus 137 ~~~~~~~l-~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~--i~iwd~~~~~~~ 210 (346)
+| +++.+ ++.+.+| .|.+||+.+++.. .+. .+.......+|+| +++.|+..+ .+|. |.++|+...+
T Consensus 256 Sp-DG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt---~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~-- 327 (433)
T PRK04922 256 SP-DGRRLALTLSRDGNPEIYVMDLGSRQLT-RLT---NHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGS-- 327 (433)
T ss_pred CC-CCCEEEEEEeCCCCceEEEEECCCCCeE-ECc---cCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCC--
Confidence 99 66655 4556655 5999999887654 343 3555556789999 676665544 4555 4455554421
Q ss_pred eeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecC---eEEEEcCCCCCCCCCCccccccccc
Q 019117 211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN---EIVLWEPKMKEQSPGEGTADILQKY 285 (346)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~ 285 (346)
...+..+........|+ |++++..+.++ .|.+||+.+++.. .+
T Consensus 328 ----------------------~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~----------~L 375 (433)
T PRK04922 328 ----------------------AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR----------TL 375 (433)
T ss_pred ----------------------eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE----------EC
Confidence 11122222333456676 77777665433 6999999876521 11
Q ss_pred cCCCcCeeEEEEeecCCcceEEEEcC---CCcEEEEEcCCCCcceeeeeeeeEEEEEecC
Q 019117 286 PVPECDIWFIKFSCDFHYNAAAIGNR---EGKIFVWELQSSPPVLIARLICFSLHVKYNP 342 (346)
Q Consensus 286 ~~~~~~v~~~~~s~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~sp 342 (346)
.. ........|+||+ ++++..+. .+.|.++++..+.........+.+...+|+|
T Consensus 376 t~-~~~~~~p~~spdG--~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 376 TP-GSLDESPSFAPNG--SMVLYATREGGRGVLAAVSTDGRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CC-CCCCCCceECCCC--CEEEEEEecCCceEEEEEECCCCceEEcccCCCCCCCCccCC
Confidence 11 1123456899999 55555443 3468888886544322322345567788987
No 228
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.62 E-value=7.6e-14 Score=121.91 Aligned_cols=188 Identities=16% Similarity=0.210 Sum_probs=148.4
Q ss_pred CCCcEEEEeecCCeEEEEEccCcceeeeeccCCC----ceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccC
Q 019117 96 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD----SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG 171 (346)
Q Consensus 96 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 171 (346)
+.+ .++.+..+..+.+||...+.....+..... ...-+-+++ +.-++++|+--+.|.+|+....+.-..+.
T Consensus 98 e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~dn~p~~l~--- 172 (967)
T KOG0974|consen 98 ENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHEDNKPIRLK--- 172 (967)
T ss_pred hcc-eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccC-cEEEEEeccccccEEEEeccccCCcceec---
Confidence 344 688888889999999988877666653221 222344455 67789999999999999987333333455
Q ss_pred CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCC
Q 019117 172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD 251 (346)
Q Consensus 172 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 251 (346)
+|.+.|..+.++. ++.++++.+.|.++++|++.+.+. .....-+|+..|..+.|..+
T Consensus 173 GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~----------------------~~~~~fgHsaRvw~~~~~~n 229 (967)
T KOG0974|consen 173 GHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREV----------------------LGCTGFGHSARVWACCFLPN 229 (967)
T ss_pred ccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccc----------------------cCcccccccceeEEEEeccc
Confidence 8999999999997 999999999999999999998321 12356689999999999988
Q ss_pred EEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCC-cCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117 252 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE-CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (346)
Q Consensus 252 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (346)
.+++++.|.+.++|+.+..+ +..+..|. ..|+.++..++. ..+++++.|+.+++|++...
T Consensus 230 ~i~t~gedctcrvW~~~~~~----------l~~y~~h~g~~iw~~~~~~~~--~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 230 RIITVGEDCTCRVWGVNGTQ----------LEVYDEHSGKGIWKIAVPIGV--IIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eeEEeccceEEEEEecccce----------ehhhhhhhhcceeEEEEcCCc--eEEEeeccCcchhhhhhhcc
Confidence 99999999999999766543 44666664 568999999888 78999999999999998764
No 229
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=5.3e-13 Score=114.41 Aligned_cols=230 Identities=10% Similarity=0.037 Sum_probs=142.2
Q ss_pred EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec---CCeEEEEEccCcceeeeeccCCCceEEEEE
Q 019117 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI---NGIIRVIDVSNEKLHKSFVGHGDSINEIRT 136 (346)
Q Consensus 60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 136 (346)
|.++|.. +...+.+.. +...+...+|+ |||+ .|+..+. +..|.+||+.+++.. .+..+.+.+...+|
T Consensus 184 l~~~d~d-g~~~~~lt~-----~~~~v~~p~wS--pDG~-~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~ 253 (435)
T PRK05137 184 LAIMDQD-GANVRYLTD-----GSSLVLTPRFS--PNRQ-EITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRF 253 (435)
T ss_pred EEEECCC-CCCcEEEec-----CCCCeEeeEEC--CCCC-EEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEE
Confidence 7777764 333333332 44566666666 9998 7776653 468999999887653 34446667788999
Q ss_pred eCCCCceE-EEeeCCCC--EEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe-cCC--eEEEEEcccccee
Q 019117 137 QPLKPSLV-VSASKDES--VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDN--TVKIWSMKEFWTY 210 (346)
Q Consensus 137 ~~~~~~~l-~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~--~i~iwd~~~~~~~ 210 (346)
+| +++.| ++.+.++. |.+||+.+++.. .+. .+........|+| +++.++..+ .+| .|.++|+....
T Consensus 254 SP-DG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt---~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~-- 325 (435)
T PRK05137 254 SP-DGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLT---DSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSN-- 325 (435)
T ss_pred CC-CCCEEEEEEecCCCceEEEEECCCCceE-Ecc---CCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCC--
Confidence 99 66655 56666665 777788877654 344 3555677899999 776666554 344 57777765521
Q ss_pred eeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeec---CeEEEEcCCCCCCCCCCccccccccc
Q 019117 211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD---NEIVLWEPKMKEQSPGEGTADILQKY 285 (346)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~ 285 (346)
...+..+...+....|+ |+.|+..+.+ ..|.+||+.++.. ..+
T Consensus 326 ----------------------~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~----------~~l 373 (435)
T PRK05137 326 ----------------------PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE----------RIL 373 (435)
T ss_pred ----------------------eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce----------Eec
Confidence 12222234445556676 7777766543 3688888765431 111
Q ss_pred cCCCcCeeEEEEeecCCcceEEEEcC-C-----CcEEEEEcCCCCcceeeeeeeeEEEEEecCC
Q 019117 286 PVPECDIWFIKFSCDFHYNAAAIGNR-E-----GKIFVWELQSSPPVLIARLICFSLHVKYNPQ 343 (346)
Q Consensus 286 ~~~~~~v~~~~~s~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~spd 343 (346)
.. ...+....|+||++ .|+..+. . ..|+++|+.++... .....+.+...+|+|-
T Consensus 374 t~-~~~~~~p~~spDG~--~i~~~~~~~~~~~~~~L~~~dl~g~~~~-~l~~~~~~~~p~Wsp~ 433 (435)
T PRK05137 374 TS-GFLVEGPTWAPNGR--VIMFFRQTPGSGGAPKLYTVDLTGRNER-EVPTPGDASDPAWSPL 433 (435)
T ss_pred cC-CCCCCCCeECCCCC--EEEEEEccCCCCCcceEEEEECCCCceE-EccCCCCccCcccCCC
Confidence 11 12456789999994 5544332 2 36888898776543 3333455667888874
No 230
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.9e-14 Score=115.55 Aligned_cols=167 Identities=16% Similarity=0.141 Sum_probs=126.8
Q ss_pred CCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeee-ccCCCceEEEEEeCC-CCceEEEeeCCCCEEEEec
Q 019117 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF-VGHGDSINEIRTQPL-KPSLVVSASKDESVRLWNV 158 (346)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~ 158 (346)
.|.+.|..+.|. ..|. .|++|+.|..|.+||+..++....+ .+|...|....|.|. +..-+++++.||.+++=.+
T Consensus 140 ~H~GcVntV~FN--~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 140 KHKGCVNTVHFN--QRGD-VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred CCCCccceeeec--ccCc-eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 477778777766 8898 9999999999999999998877666 479999999999885 3457899999999999877
Q ss_pred CCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee
Q 019117 159 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 238 (346)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (346)
.....+...+....|.++|.-++.-|.....|.+++.|+.+.-+|++....... +.....
T Consensus 217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~--------------------~~cr~~ 276 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK--------------------FVCREA 276 (559)
T ss_pred ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccce--------------------eeeecc
Confidence 644433333333369999999999997788999999999999999988332111 111222
Q ss_pred ccc---ceEEEEec---CCEEEEEeecCeEEEEcCCCC
Q 019117 239 HSN---YVDCNRWL---GDFILSKSVDNEIVLWEPKMK 270 (346)
Q Consensus 239 ~~~---~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~ 270 (346)
+.. ....++.+ ...+++++.|..+++||.+..
T Consensus 277 ~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~ 314 (559)
T KOG1334|consen 277 DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRI 314 (559)
T ss_pred CCccceeeeeEecCCCCccccccCChhhhhhhhcccch
Confidence 222 34455555 558999999999999998754
No 231
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1e-12 Score=112.13 Aligned_cols=232 Identities=12% Similarity=0.061 Sum_probs=134.4
Q ss_pred EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC---CeEEEEEccCcceeeeeccCCCceEEEEE
Q 019117 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN---GIIRVIDVSNEKLHKSFVGHGDSINEIRT 136 (346)
Q Consensus 60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 136 (346)
+.++|. ++.....+.. +...+...+|+ |||+ .|+..+.+ ..|.+||+.+++... +....+.+...+|
T Consensus 178 L~~~D~-dG~~~~~l~~-----~~~~v~~p~wS--PDG~-~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~ 247 (427)
T PRK02889 178 LQISDA-DGQNAQSALS-----SPEPIISPAWS--PDGT-KLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAW 247 (427)
T ss_pred EEEECC-CCCCceEecc-----CCCCcccceEc--CCCC-EEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEE
Confidence 666664 3333333322 34556666666 9998 77766532 469999998887543 3333455678999
Q ss_pred eCCCCceEE-EeeCCCCEEEEec--CCCeeEEEecccCCCCcceEEEEecCCCCcEEEEE-ecCCeEEEEEccccceeee
Q 019117 137 QPLKPSLVV-SASKDESVRLWNV--QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC-GMDNTVKIWSMKEFWTYVE 212 (346)
Q Consensus 137 ~~~~~~~l~-s~~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~ 212 (346)
+| +++.|+ +.+.++...+|.+ ..+. ...+. .+........|+| +++.|+.. ..++...+|.+.....
T Consensus 248 SP-DG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt---~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g--- 318 (427)
T PRK02889 248 SP-DGRTLAVALSRDGNSQIYTVNADGSG-LRRLT---QSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGG--- 318 (427)
T ss_pred CC-CCCEEEEEEccCCCceEEEEECCCCC-cEECC---CCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCC---
Confidence 99 666554 6677887666654 4343 44444 3455566788999 77666544 4456777776643110
Q ss_pred eceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecC---eEEEEcCCCCCCCCCCccccccccccC
Q 019117 213 KSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN---EIVLWEPKMKEQSPGEGTADILQKYPV 287 (346)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~ 287 (346)
....+..+........|+ |++++..+.++ .|.+||+.+++.. .+..
T Consensus 319 -------------------~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~----------~lt~ 369 (427)
T PRK02889 319 -------------------AAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT----------ALTD 369 (427)
T ss_pred -------------------ceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE----------EccC
Confidence 011111122223345565 88888766554 6999999876521 1111
Q ss_pred CCcCeeEEEEeecCCcceEEEEcC-CC--cEEEEEcCCCCcceeee-eeeeEEEEEecCC
Q 019117 288 PECDIWFIKFSCDFHYNAAAIGNR-EG--KIFVWELQSSPPVLIAR-LICFSLHVKYNPQ 343 (346)
Q Consensus 288 ~~~~v~~~~~s~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~-~~~~~~~~~~spd 343 (346)
........|+||++ .|+..+. .| .+++.++. +....... ..+.+...+|+|-
T Consensus 370 -~~~~~~p~~spdg~--~l~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 370 -TTRDESPSFAPNGR--YILYATQQGGRSVLAAVSSD-GRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred -CCCccCceECCCCC--EEEEEEecCCCEEEEEEECC-CCceEEeecCCCCCCCCccCCC
Confidence 11235678999994 5555443 33 35566663 44333333 3355677899884
No 232
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.59 E-value=2.4e-12 Score=106.20 Aligned_cols=190 Identities=16% Similarity=0.260 Sum_probs=152.7
Q ss_pred CccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcC-----------------CCCcEEEEeecCCe
Q 019117 48 YFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV-----------------DGIPFLVAGGINGI 109 (346)
Q Consensus 48 ~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------~~~~~l~~~~~dg~ 109 (346)
...+||....|+ +++|+..+++....+..... -.+...++.|.... .+...++-|...|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~--~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIAS--LSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchh--ccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 468999999888 99999998887666653221 22333444444221 12337888899999
Q ss_pred EEEEEccCcceeeeec--cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117 110 IRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI 187 (346)
Q Consensus 110 i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 187 (346)
|.+|++..++....+. .|.+.|.++.++. +-..|.+++.|+.+..|+....+.+..++ .....+.+++.+| ++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~---~~~~~~~sl~is~-D~ 156 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWK---EQKPLVSSLCISP-DG 156 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeec---cCCCccceEEEcC-CC
Confidence 9999999999888775 6999999999998 88899999999999999999999999998 6788899999999 78
Q ss_pred cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-------CCEEEEE-eec
Q 019117 188 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-------GDFILSK-SVD 259 (346)
Q Consensus 188 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~l~~~-~~d 259 (346)
..+++++ +.|++||+.+ ...+..+.+|...|+++.|- |.+++++ ..+
T Consensus 157 ~~l~~as--~~ik~~~~~~-----------------------kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~ 211 (541)
T KOG4547|consen 157 KILLTAS--RQIKVLDIET-----------------------KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAE 211 (541)
T ss_pred CEEEecc--ceEEEEEccC-----------------------ceEEEEecCCCcceEEEEEEEeccccccceeeeccccc
Confidence 8898887 6899999999 56788999999999999995 4565554 456
Q ss_pred CeEEEEcCCC
Q 019117 260 NEIVLWEPKM 269 (346)
Q Consensus 260 ~~i~iwd~~~ 269 (346)
..+.+|-...
T Consensus 212 r~i~~w~v~~ 221 (541)
T KOG4547|consen 212 RGITVWVVEK 221 (541)
T ss_pred cceeEEEEEc
Confidence 6788887765
No 233
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=6.5e-13 Score=113.84 Aligned_cols=195 Identities=12% Similarity=0.044 Sum_probs=126.3
Q ss_pred CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeC---CCCEEEEecCCCeeEEEecccCCCCcceEEEEecC
Q 019117 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK---DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP 184 (346)
Q Consensus 108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 184 (346)
..|.++|.+. ...+.+..|...+...+|+| +++.|+..+. +..|.+||+.+++... +. .+.+.+...+|+|
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~---~~~g~~~~~~~SP 255 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQREL-VG---NFPGMTFAPRFSP 255 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEEE-ee---cCCCcccCcEECC
Confidence 4788888754 44455666788999999999 7777776653 4689999998876543 33 3566778899999
Q ss_pred CCCcEE-EEEecCCe--EEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEee-
Q 019117 185 SDIYRI-ASCGMDNT--VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV- 258 (346)
Q Consensus 185 ~~~~~l-~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~- 258 (346)
+++.| ++.+.++. |.+||+.... ...+..+........|+ |+.++..+.
T Consensus 256 -DG~~la~~~~~~g~~~Iy~~d~~~~~------------------------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~ 310 (435)
T PRK05137 256 -DGRKVVMSLSQGGNTDIYTMDLRSGT------------------------TTRLTDSPAIDTSPSYSPDGSQIVFESDR 310 (435)
T ss_pred -CCCEEEEEEecCCCceEEEEECCCCc------------------------eEEccCCCCccCceeEcCCCCEEEEEECC
Confidence 66544 56666665 6666776521 22333344445566777 777776653
Q ss_pred cC--eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC---CcEEEEEcCCCCcceeeeeee
Q 019117 259 DN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE---GKIFVWELQSSPPVLIARLIC 333 (346)
Q Consensus 259 d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~ 333 (346)
++ .|.++|+.+++ ...+......+....|+||+ +.|+..+.+ ..|.+||+.++.. .......
T Consensus 311 ~g~~~Iy~~d~~g~~----------~~~lt~~~~~~~~~~~SpdG--~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~ 377 (435)
T PRK05137 311 SGSPQLYVMNADGSN----------PRRISFGGGRYSTPVWSPRG--DLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGF 377 (435)
T ss_pred CCCCeEEEEECCCCC----------eEEeecCCCcccCeEECCCC--CEEEEEEcCCCceEEEEEECCCCce-EeccCCC
Confidence 33 57888876654 12222223455667899999 566655432 3688899866543 2222223
Q ss_pred eEEEEEecCCCCC
Q 019117 334 FSLHVKYNPQSVY 346 (346)
Q Consensus 334 ~~~~~~~spdg~~ 346 (346)
......|+|||++
T Consensus 378 ~~~~p~~spDG~~ 390 (435)
T PRK05137 378 LVEGPTWAPNGRV 390 (435)
T ss_pred CCCCCeECCCCCE
Confidence 4567899999974
No 234
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.57 E-value=6.6e-12 Score=103.99 Aligned_cols=260 Identities=15% Similarity=0.079 Sum_probs=150.7
Q ss_pred ccEEEEEc-CCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeecc
Q 019117 49 FNVFATVG-GNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG 126 (346)
Q Consensus 49 ~~~la~~~-~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 126 (346)
++++++.. +++ |.+.|..+.+.+..+... ..+ .....++|||+ ++++++.||.|.++|+.+.+.+.+++.
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~------~~~-h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~~~v~~i~~ 76 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTG------GAP-HAGLKFSPDGR-YLYVANRDGTVSVIDLATGKVVATIKV 76 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-S------TTE-EEEEE-TT-SS-EEEEEETTSEEEEEETTSSSEEEEEE-
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCC------CCc-eeEEEecCCCC-EEEEEcCCCeEEEEECCcccEEEEEec
Confidence 45554433 334 999998888888877642 222 23344669999 888889999999999999999999885
Q ss_pred CCCceEEEEEeCCCCceEEEe-eCCCCEEEEecCCCeeEEEecccC----CCCcceEEEEecCCCCc-EEEEEecCCeEE
Q 019117 127 HGDSINEIRTQPLKPSLVVSA-SKDESVRLWNVQTGICILIFAGAG----GHRNEVLSVDFHPSDIY-RIASCGMDNTVK 200 (346)
Q Consensus 127 ~~~~v~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~ 200 (346)
. .....+++++ ++++++++ ..++.+.++|.++.+.++.+.... .....+.++..+| ... ++++--..+.|.
T Consensus 77 G-~~~~~i~~s~-DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~ 153 (369)
T PF02239_consen 77 G-GNPRGIAVSP-DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIW 153 (369)
T ss_dssp S-SEEEEEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEE
T ss_pred C-CCcceEEEcC-CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEE
Confidence 4 4568899999 77777655 578999999999999998876321 1235677888887 555 555555558888
Q ss_pred EEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEE-eecCeEEEEcCCCCCCCCCCc
Q 019117 201 IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK-SVDNEIVLWEPKMKEQSPGEG 277 (346)
Q Consensus 201 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~-~~d~~i~iwd~~~~~~~~~~~ 277 (346)
+-|...... ................|+ +++++++ ..++.|-++|..+++......
T Consensus 154 vVdy~d~~~----------------------~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 154 VVDYSDPKN----------------------LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp EEETTTSSC----------------------EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred EEEeccccc----------------------cceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence 888776321 111122223345556666 6776554 557899999998875321110
Q ss_pred cccccccccCCCcCee-------EEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117 278 TADILQKYPVPECDIW-------FIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 278 ~~~~~~~~~~~~~~v~-------~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~ 346 (346)
... ..|..++. ...|...+.....++.-....+.+||..+.+.+......+...-+.-+||++|
T Consensus 212 ~g~-----~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~ 282 (369)
T PF02239_consen 212 TGK-----KPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRY 282 (369)
T ss_dssp -SS-----SBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SE
T ss_pred ccc-----cccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCcc
Confidence 000 00111111 12243333222332333334677899999998888888777777888999875
No 235
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.3e-12 Score=111.34 Aligned_cols=216 Identities=12% Similarity=0.092 Sum_probs=131.8
Q ss_pred cccCCCceEEEEEEeecCCCccEEEEEcC---C-cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE-
Q 019117 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGG---N-RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA- 103 (346)
Q Consensus 29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~---~-~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~- 103 (346)
+..+...+...+||| +|+.||..+. + .+.+|++.+++... +..+ ........| +|||+ .|+.
T Consensus 194 lt~~~~~~~~p~wSP----DG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~-----~~~~~~~~~--SPDG~-~La~~ 260 (429)
T PRK03629 194 VHRSPQPLMSPAWSP----DGSKLAYVTFESGRSALVIQTLANGAVRQ-VASF-----PRHNGAPAF--SPDGS-KLAFA 260 (429)
T ss_pred eecCCCceeeeEEcC----CCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCC-----CCCcCCeEE--CCCCC-EEEEE
Confidence 344567889999999 7888876542 2 29999987765432 2221 111223444 59998 5554
Q ss_pred eecCC--eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeC-CCCEEE--EecCCCeeEEEecccCCCCcceE
Q 019117 104 GGING--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK-DESVRL--WNVQTGICILIFAGAGGHRNEVL 178 (346)
Q Consensus 104 ~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~i--wd~~~~~~~~~~~~~~~~~~~v~ 178 (346)
.+.+| .|.+||+++++..+... +...+....|+| +++.|+..+. ++...+ +|+..++.. .+. .......
T Consensus 261 ~~~~g~~~I~~~d~~tg~~~~lt~-~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt---~~~~~~~ 334 (429)
T PRK03629 261 LSKTGSLNLYVMDLASGQIRQVTD-GRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQ-RIT---WEGSQNQ 334 (429)
T ss_pred EcCCCCcEEEEEECCCCCEEEccC-CCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeE-Eee---cCCCCcc
Confidence 44455 58889998877654433 445678899999 7777766554 444444 466665443 333 2344556
Q ss_pred EEEecCCCCcEEEEEecC---CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEE
Q 019117 179 SVDFHPSDIYRIASCGMD---NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI 253 (346)
Q Consensus 179 ~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l 253 (346)
...|+| ++++++..+.+ ..|.+||+.+... ..+.. ........|+ |++|
T Consensus 335 ~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g~~------------------------~~Lt~-~~~~~~p~~SpDG~~i 388 (429)
T PRK03629 335 DADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGV------------------------QVLTD-TFLDETPSIAPNGTMV 388 (429)
T ss_pred CEEECC-CCCEEEEEEccCCCceEEEEECCCCCe------------------------EEeCC-CCCCCCceECCCCCEE
Confidence 788999 77777665443 3578888876321 11111 1111234455 8888
Q ss_pred EEEeecCe---EEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEee
Q 019117 254 LSKSVDNE---IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC 299 (346)
Q Consensus 254 ~~~~~d~~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 299 (346)
+.++.++. +.++++... ....+..+.+.+...+|+|
T Consensus 389 ~~~s~~~~~~~l~~~~~~G~----------~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 389 IYSSSQGMGSVLNLVSTDGR----------FKARLPATDGQVKFPAWSP 427 (429)
T ss_pred EEEEcCCCceEEEEEECCCC----------CeEECccCCCCcCCcccCC
Confidence 88887764 677777543 2344555666777788886
No 236
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.57 E-value=1e-12 Score=98.93 Aligned_cols=148 Identities=22% Similarity=0.324 Sum_probs=104.3
Q ss_pred EEEEEeecCCCccEEEEEcC-C----------cEEEEEecc-CceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE--
Q 019117 38 AVVFNFIDSRYFNVFATVGG-N----------RVTVYQCLE-GGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA-- 103 (346)
Q Consensus 38 ~~~~~p~~~~~~~~la~~~~-~----------~v~i~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~-- 103 (346)
.+.|+| .|+.|+.-.. + ...+|.+.. +.....+.. ...+.|..++|+ |+|+ .|++
T Consensus 10 ~~~W~~----~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l----~~~~~I~~~~Ws--P~g~-~favi~ 78 (194)
T PF08662_consen 10 KLHWQP----SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL----KKEGPIHDVAWS--PNGN-EFAVIY 78 (194)
T ss_pred EEEecc----cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec----cCCCceEEEEEC--cCCC-EEEEEE
Confidence 477887 5655544332 1 145555532 233333332 133468888887 8888 5433
Q ss_pred eecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCC---CCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117 104 GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD---ESVRLWNVQTGICILIFAGAGGHRNEVLSV 180 (346)
Q Consensus 104 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 180 (346)
|..++.|.+||++ ++.+..+. ...++.+.|+| ++++|++++.+ |.|.+||.++.+.+.... |. .++.+
T Consensus 79 g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~-~~t~~ 149 (194)
T PF08662_consen 79 GSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HS-DATDV 149 (194)
T ss_pred ccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCEEeeccc----cC-cEEEE
Confidence 4467799999996 66666664 56778999999 88899888743 669999999888888775 44 47899
Q ss_pred EecCCCCcEEEEEec------CCeEEEEEccc
Q 019117 181 DFHPSDIYRIASCGM------DNTVKIWSMKE 206 (346)
Q Consensus 181 ~~~~~~~~~l~s~~~------d~~i~iwd~~~ 206 (346)
+|+| +|++++++.. |..++||+...
T Consensus 150 ~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 150 EWSP-DGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEcC-CCCEEEEEEeccceeccccEEEEEecC
Confidence 9999 8898988864 78899999865
No 237
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=3.6e-13 Score=114.88 Aligned_cols=197 Identities=14% Similarity=0.092 Sum_probs=122.6
Q ss_pred CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCC---CCEEEEecCCCeeEEEecccCCCCcceEEEEecC
Q 019117 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD---ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP 184 (346)
Q Consensus 108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 184 (346)
..|.++|.. +...+.+..+...+.+.+|+| +++.|+..+.+ ..|.+||+.+++.... . ...+.+...+|+|
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~---~~~g~~~~~~~SP 249 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVV-A---NFKGSNSAPAWSP 249 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEe-e---cCCCCccceEECC
Confidence 467777764 444445556778899999999 77777766543 3599999998876443 2 2445567899999
Q ss_pred CCCcEE-EEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEee-cC
Q 019117 185 SDIYRI-ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-DN 260 (346)
Q Consensus 185 ~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-d~ 260 (346)
++..| ++.+.++...+|.+.... .....+..+........|+ |+.|+..+. ++
T Consensus 250 -DG~~la~~~~~~g~~~Iy~~d~~~----------------------~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g 306 (427)
T PRK02889 250 -DGRTLAVALSRDGNSQIYTVNADG----------------------SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGG 306 (427)
T ss_pred -CCCEEEEEEccCCCceEEEEECCC----------------------CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCC
Confidence 66555 567778887777664310 0122233334344556777 777765554 46
Q ss_pred eEEEEcCC--CCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCC---cEEEEEcCCCCcceeeeeeeeE
Q 019117 261 EIVLWEPK--MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG---KIFVWELQSSPPVLIARLICFS 335 (346)
Q Consensus 261 ~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~ 335 (346)
...+|.+. +++ ...+...........||||| ++|+..+.++ .|.+||+.+++...... ....
T Consensus 307 ~~~Iy~~~~~~g~----------~~~lt~~g~~~~~~~~SpDG--~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~~~~ 373 (427)
T PRK02889 307 APQIYRMPASGGA----------AQRVTFTGSYNTSPRISPDG--KLLAYISRVGGAFKLYVQDLATGQVTALTD-TTRD 373 (427)
T ss_pred CcEEEEEECCCCc----------eEEEecCCCCcCceEECCCC--CEEEEEEccCCcEEEEEEECCCCCeEEccC-CCCc
Confidence 66677654 322 11111112233457899999 5676665443 69999999887543322 2234
Q ss_pred EEEEecCCCCC
Q 019117 336 LHVKYNPQSVY 346 (346)
Q Consensus 336 ~~~~~spdg~~ 346 (346)
....|+|||++
T Consensus 374 ~~p~~spdg~~ 384 (427)
T PRK02889 374 ESPSFAPNGRY 384 (427)
T ss_pred cCceECCCCCE
Confidence 56899999974
No 238
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.56 E-value=2.2e-12 Score=97.50 Aligned_cols=230 Identities=13% Similarity=0.121 Sum_probs=159.6
Q ss_pred cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc-EEEEeecCCeEEEEEccCcceeeeeccC------CCce
Q 019117 59 RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP-FLVAGGINGIIRVIDVSNEKLHKSFVGH------GDSI 131 (346)
Q Consensus 59 ~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~v 131 (346)
++.+|++.+.+... +...... ....+..+.|..-+.+.. .++-+..+|.|.++..........+.+- ....
T Consensus 47 kl~Lys~~d~~~~~-l~~~q~~-dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 47 KLHLYSLEDMKLSP-LDTLQCT-DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ceEEEeecccccCc-cceeeee-cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 38888887665544 2221111 334556677776555443 5667778899999987655443333321 1135
Q ss_pred EEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEE--EecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccce
Q 019117 132 NEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL--IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT 209 (346)
Q Consensus 132 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 209 (346)
.++.|++ .+..++++..+|.+.+-+........ .++ .|+.++....|+..+.+++++|+.|+.+..||+|.+..
T Consensus 125 lslD~~~-~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk---~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~ 200 (339)
T KOG0280|consen 125 LSLDIST-SGTKIFVSDSRGSISGVYETEMVLEKVQTWK---VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT 200 (339)
T ss_pred eEEEeec-cCceEEEEcCCCcEEEEecceeeeeeccccc---ccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc
Confidence 6888998 77888888889999866655443333 555 79999999999977789999999999999999995221
Q ss_pred eeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCcccccccccc
Q 019117 210 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP 286 (346)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 286 (346)
........|...|.++.-+ +.++++|+.|..|++||.++..+ ++..-.
T Consensus 201 ---------------------~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k--------Pl~~~~ 251 (339)
T KOG0280|consen 201 ---------------------FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK--------PLFKAK 251 (339)
T ss_pred ---------------------eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC--------ccccCc
Confidence 1122356688899999887 56999999999999999996542 333322
Q ss_pred CCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCc
Q 019117 287 VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP 325 (346)
Q Consensus 287 ~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~ 325 (346)
. .+.|+.+..+|.-+..+|+++-.+| .+|-+.+.+..
T Consensus 252 v-~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~ 288 (339)
T KOG0280|consen 252 V-GGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVL 288 (339)
T ss_pred c-ccceEEEEecchhhhHHHHHHHhcC-ceEEEeccccc
Confidence 2 3789999999987645566665555 67777776543
No 239
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.55 E-value=2.8e-13 Score=118.47 Aligned_cols=187 Identities=20% Similarity=0.300 Sum_probs=139.0
Q ss_pred cEEEE-EcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCC
Q 019117 50 NVFAT-VGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG 128 (346)
Q Consensus 50 ~~la~-~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 128 (346)
..++. .+.+.+.+||...+.....++.- ...--..++-+..+++.- ++++|+.-+.|.+|++...+.-..+.+|.
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~~---er~~l~~~~~~g~s~~~~-~i~~gsv~~~iivW~~~~dn~p~~l~GHe 175 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLSKIQSD---ERCTLYSSLIIGDSAEEL-YIASGSVFGEIIVWKPHEDNKPIRLKGHE 175 (967)
T ss_pred ceEEEEEcCceEEEEecccCceehhcCCC---ceEEEEeEEEEeccCcEE-EEEeccccccEEEEeccccCCcceecccC
Confidence 44444 44455999998877665555421 111112223344455555 99999999999999987444334688999
Q ss_pred CceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEE-EecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEcccc
Q 019117 129 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL-IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF 207 (346)
Q Consensus 129 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 207 (346)
+.|..+.++. ++.++++.|+|+++++|++.+.+... ..- +|...|..+.|+| + .++|++.|.+.++|+....
T Consensus 176 G~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~f---gHsaRvw~~~~~~-n--~i~t~gedctcrvW~~~~~ 248 (967)
T KOG0974|consen 176 GSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGF---GHSARVWACCFLP-N--RIITVGEDCTCRVWGVNGT 248 (967)
T ss_pred CceEEEEEcc-CCcEEEEEecCcceeeeecccccccCcccc---cccceeEEEEecc-c--eeEEeccceEEEEEecccc
Confidence 9999999999 99999999999999999999887766 222 7999999999998 5 8999999999999976651
Q ss_pred ceeeeeceeecCCCCCCCCccceeceEEEeecc-cceEEEEec--CCEEEEEeecCeEEEEcCCCCC
Q 019117 208 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS-NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKE 271 (346)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~ 271 (346)
.+..+..|. +.|..+... ...+++++.|+.+++|++....
T Consensus 249 ------------------------~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 249 ------------------------QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred ------------------------eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 222444454 346777776 4578999999999999987643
No 240
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.53 E-value=8.4e-12 Score=95.97 Aligned_cols=283 Identities=12% Similarity=0.174 Sum_probs=169.6
Q ss_pred CceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117 34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 112 (346)
+.|.-+.|.. + ....|.....++ |.+|++...+-...+.. ....+..++|+ |+|+.+|.+...+-.|.+
T Consensus 49 dki~yieW~a-d--s~~ilC~~yk~~~vqvwsl~Qpew~ckIde-----g~agls~~~WS--PdgrhiL~tseF~lriTV 118 (447)
T KOG4497|consen 49 DKIVYIEWKA-D--SCHILCVAYKDPKVQVWSLVQPEWYCKIDE-----GQAGLSSISWS--PDGRHILLTSEFDLRITV 118 (447)
T ss_pred HHhhheeeec-c--ceeeeeeeeccceEEEEEeecceeEEEecc-----CCCcceeeeEC--CCcceEeeeecceeEEEE
Confidence 5577788987 1 234555566665 99999887666555553 45667778887 999878888888999999
Q ss_pred EEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCC------------------------------------CCEEEE
Q 019117 113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD------------------------------------ESVRLW 156 (346)
Q Consensus 113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------------------------------------~~i~iw 156 (346)
|.+.+.+... ++-....+..++|+| ++++.+.+++- ..+.+|
T Consensus 119 WSL~t~~~~~-~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVw 196 (447)
T KOG4497|consen 119 WSLNTQKGYL-LPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVW 196 (447)
T ss_pred EEeccceeEE-ecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEe
Confidence 9998866433 222334557888888 67666554431 123444
Q ss_pred ecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeee------------------------
Q 019117 157 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVE------------------------ 212 (346)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~------------------------ 212 (346)
|---.-.+..+. -.-.+..++|+| .+++++.|+.|+.+++.+--+-+...+
T Consensus 197 d~~Leykv~aYe----~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~q 271 (447)
T KOG4497|consen 197 DNVLEYKVYAYE----RGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQ 271 (447)
T ss_pred cchhhheeeeee----eccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhh
Confidence 432222222221 235688999999 999999999999998855433110000
Q ss_pred -----eceeecCC-C-------CCCCCccceeceEEEe------ecccceEEEEec--CCEEEEEee--cCeEEEEcCCC
Q 019117 213 -----KSFTWTDL-P-------SKFPTKYVQFPVFIAS------VHSNYVDCNRWL--GDFILSKSV--DNEIVLWEPKM 269 (346)
Q Consensus 213 -----~~~~~~~~-~-------~~~~~~~~~~~~~~~~------~~~~~i~~~~~~--~~~l~~~~~--d~~i~iwd~~~ 269 (346)
.++..... . ..+........+..+. .-...+--++|+ ..++++-.. -+.+-+||++.
T Consensus 272 l~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~ 351 (447)
T KOG4497|consen 272 LLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN 351 (447)
T ss_pred hcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh
Confidence 00000000 0 0000000011111111 112346678888 445555433 36799999987
Q ss_pred CCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCC
Q 019117 270 KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSV 345 (346)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~ 345 (346)
.+ +...-....+|....|.|.. ..|+.+.....+++|.......+....-.-.+..++|.-+|.
T Consensus 352 l~----------l~avLiQk~piraf~WdP~~--prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~ 415 (447)
T KOG4497|consen 352 LK----------LHAVLIQKHPIRAFEWDPGR--PRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGE 415 (447)
T ss_pred hh----------hhhhhhhccceeEEEeCCCC--ceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCc
Confidence 65 22333345689999999987 567777767789999987643333333333477888887774
No 241
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=3e-12 Score=109.68 Aligned_cols=218 Identities=13% Similarity=0.082 Sum_probs=130.5
Q ss_pred ecccCCCceEEEEEEeecCCCccEEEEEcCC----cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE
Q 019117 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGN----RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (346)
Q Consensus 28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~----~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 103 (346)
.+..|...+.+.+|+| +++.|+..+.. .|.+|++.++.... +..+ ........ ++|+|+.++++
T Consensus 198 ~lt~~~~~v~~p~wSp----Dg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~-----~g~~~~~~--~SpDG~~l~~~ 265 (433)
T PRK04922 198 TILRSAEPILSPAWSP----DGKKLAYVSFERGRSAIYVQDLATGQREL-VASF-----RGINGAPS--FSPDGRRLALT 265 (433)
T ss_pred EeecCCCccccccCCC----CCCEEEEEecCCCCcEEEEEECCCCCEEE-eccC-----CCCccCce--ECCCCCEEEEE
Confidence 3556677899999999 78888876632 29999987765432 2221 12222344 45999834455
Q ss_pred eecCC--eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEee-CCCC--EEEEecCCCeeEEEecccCCCCcceE
Q 019117 104 GGING--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDES--VRLWNVQTGICILIFAGAGGHRNEVL 178 (346)
Q Consensus 104 ~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~--i~iwd~~~~~~~~~~~~~~~~~~~v~ 178 (346)
.+.+| .|.+||+.+++.. .+..+.......+|+| +++.|+.++ .+|. |.++|+.+++...... +.....
T Consensus 266 ~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~----~g~~~~ 339 (433)
T PRK04922 266 LSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTF----QGNYNA 339 (433)
T ss_pred EeCCCCceEEEEECCCCCeE-ECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeec----CCCCcc
Confidence 55555 5999999887754 3444555567889999 777766655 4454 6666776665433222 233445
Q ss_pred EEEecCCCCcEEEEEecCC---eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEE
Q 019117 179 SVDFHPSDIYRIASCGMDN---TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI 253 (346)
Q Consensus 179 ~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l 253 (346)
..+|+| +++.++..+.++ .|.+||+.+... ..+. +........|+ |+++
T Consensus 340 ~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~g~~------------------------~~Lt-~~~~~~~p~~spdG~~i 393 (433)
T PRK04922 340 RASVSP-DGKKIAMVHGSGGQYRIAVMDLSTGSV------------------------RTLT-PGSLDESPSFAPNGSMV 393 (433)
T ss_pred CEEECC-CCCEEEEEECCCCceeEEEEECCCCCe------------------------EECC-CCCCCCCceECCCCCEE
Confidence 789999 777776654332 589999876321 1111 11122234565 7776
Q ss_pred EEEeec---CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEee
Q 019117 254 LSKSVD---NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC 299 (346)
Q Consensus 254 ~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 299 (346)
+..+.+ +.|.++++.... ...+..+.+.+...+|+|
T Consensus 394 ~~~s~~~g~~~L~~~~~~g~~----------~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 394 LYATREGGRGVLAAVSTDGRV----------RQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEEEecCCceEEEEEECCCCc----------eEEcccCCCCCCCCccCC
Confidence 666553 457777775432 233333444556666765
No 242
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.53 E-value=5.1e-12 Score=95.13 Aligned_cols=149 Identities=15% Similarity=0.271 Sum_probs=99.9
Q ss_pred EEEEEcCCCCcEEEEeec---------CCeEEEEEccCc-ceeeeecc-CCCceEEEEEeCCCCceEEE--eeCCCCEEE
Q 019117 89 VSWACNVDGIPFLVAGGI---------NGIIRVIDVSNE-KLHKSFVG-HGDSINEIRTQPLKPSLVVS--ASKDESVRL 155 (346)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~l~s--~~~d~~i~i 155 (346)
+.+..+++|..+++.... -+...+|.++.. .....+.- ..++|.+++|+| +++.|++ |..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEE
Confidence 334444777733333331 134556665332 33444432 345799999999 6666544 446789999
Q ss_pred EecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEec---CCeEEEEEccccceeeeeceeecCCCCCCCCccceec
Q 019117 156 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM---DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP 232 (346)
Q Consensus 156 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (346)
||++ ++.+..+. ...++.+.|+| +|+++++++. .|.|.+||+++. ..
T Consensus 88 yd~~-~~~i~~~~-----~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~-----------------------~~ 137 (194)
T PF08662_consen 88 YDVK-GKKIFSFG-----TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKK-----------------------KK 137 (194)
T ss_pred EcCc-ccEeEeec-----CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCC-----------------------EE
Confidence 9997 66676663 45778999999 8888888865 367999999972 22
Q ss_pred eEEEeecccceEEEEec--CCEEEEEee------cCeEEEEcCCCC
Q 019117 233 VFIASVHSNYVDCNRWL--GDFILSKSV------DNEIVLWEPKMK 270 (346)
Q Consensus 233 ~~~~~~~~~~i~~~~~~--~~~l~~~~~------d~~i~iwd~~~~ 270 (346)
+... +...++.+.|+ |++|+++.. |+.++||+....
T Consensus 138 i~~~--~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 138 ISTF--EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred eecc--ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 3222 23347899998 889998864 788999998643
No 243
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=3.3e-12 Score=105.05 Aligned_cols=224 Identities=16% Similarity=0.166 Sum_probs=145.0
Q ss_pred cceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCC-CceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe
Q 019117 84 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG-DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI 162 (346)
Q Consensus 84 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 162 (346)
..-+.+.+ +|||+.++++|...-.|++||+.+-.+ .+..|. ..+..+....++-..++---.|.+|-+-.. -|.
T Consensus 52 ~ast~ik~--s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G~ 126 (703)
T KOG2321|consen 52 TASTRIKV--SPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YGR 126 (703)
T ss_pred cccceeEe--cCCCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEeccchhhheEeecCceeeehhh-cCe
Confidence 33444444 599997788888899999999976543 333342 233333333325555565666777765432 232
Q ss_pred eEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccc
Q 019117 163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 242 (346)
Q Consensus 163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (346)
.- .++ -+..-+.++++..+..+++ ++....|.-+++..+ .-+..+......
T Consensus 127 hy-~~R----IP~~GRDm~y~~~scDly~-~gsg~evYRlNLEqG-----------------------rfL~P~~~~~~~ 177 (703)
T KOG2321|consen 127 HY-RTR----IPKFGRDMKYHKPSCDLYL-VGSGSEVYRLNLEQG-----------------------RFLNPFETDSGE 177 (703)
T ss_pred ee-eee----cCcCCccccccCCCccEEE-eecCcceEEEEcccc-----------------------cccccccccccc
Confidence 21 222 2334456777653455444 444567888888873 334455556678
Q ss_pred eEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccC--CCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117 243 VDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV--PECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (346)
Q Consensus 243 i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw 318 (346)
+.++..+ ..+|++|+.+|.|.+||.++............+....+ ....|+++.|+.+| ..+++|+.+|.+.||
T Consensus 178 lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g--L~~aVGts~G~v~iy 255 (703)
T KOG2321|consen 178 LNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG--LHVAVGTSTGSVLIY 255 (703)
T ss_pred ceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCc--eeEEeeccCCcEEEE
Confidence 8888888 67899999999999999998764222211111111111 12359999999998 889999999999999
Q ss_pred EcCCCCcceeeeeee--eEEEEEecCC
Q 019117 319 ELQSSPPVLIARLIC--FSLHVKYNPQ 343 (346)
Q Consensus 319 d~~~~~~~~~~~~~~--~~~~~~~spd 343 (346)
|+.+.+++....+.. ++..+.|.+.
T Consensus 256 DLRa~~pl~~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 256 DLRASKPLLVKDHGYELPIKKLDWQDT 282 (703)
T ss_pred EcccCCceeecccCCccceeeeccccc
Confidence 999999888776654 4677888654
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.50 E-value=1.7e-11 Score=105.14 Aligned_cols=210 Identities=14% Similarity=0.090 Sum_probs=124.7
Q ss_pred EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC---CeEEEEEccCcceeeeeccCCCceEEEEE
Q 019117 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN---GIIRVIDVSNEKLHKSFVGHGDSINEIRT 136 (346)
Q Consensus 60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 136 (346)
|.++|..... .+.+.. +...+...+|+ |+|+ +|+.+..+ ..|.+||+.+++... +..+.+.+.+++|
T Consensus 172 l~~~d~~g~~-~~~l~~-----~~~~~~~p~~S--pdg~-~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~ 241 (417)
T TIGR02800 172 LQVADYDGAN-PQTITR-----SREPILSPAWS--PDGQ-KLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAF 241 (417)
T ss_pred EEEEcCCCCC-CEEeec-----CCCceecccCC--CCCC-EEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEE
Confidence 7777754333 333322 33345555555 9999 77766543 479999998876543 3335566778999
Q ss_pred eCCCCceE-EEeeCCC--CEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe-cCC--eEEEEEcccccee
Q 019117 137 QPLKPSLV-VSASKDE--SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDN--TVKIWSMKEFWTY 210 (346)
Q Consensus 137 ~~~~~~~l-~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~--~i~iwd~~~~~~~ 210 (346)
+| +++.| ++.+.++ .|.+||+.+++... +. .+........|+| +++.|+..+ .++ .|.++|+...+
T Consensus 242 sp-Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~---~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~-- 313 (417)
T TIGR02800 242 SP-DGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LT---NGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGE-- 313 (417)
T ss_pred CC-CCCEEEEEECCCCCccEEEEECCCCCEEE-CC---CCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCC--
Confidence 99 66655 4555444 58889988765433 33 2444455678999 776665444 344 46666665421
Q ss_pred eeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecC---eEEEEcCCCCCCCCCCccccccccc
Q 019117 211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN---EIVLWEPKMKEQSPGEGTADILQKY 285 (346)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~ 285 (346)
...+..+...+....|+ +++++.++.++ .|.+||+.++.. ..+
T Consensus 314 ----------------------~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~----------~~l 361 (417)
T TIGR02800 314 ----------------------VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE----------RVL 361 (417)
T ss_pred ----------------------EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe----------EEc
Confidence 12233334455566776 77888877765 788999887531 111
Q ss_pred cCCCcCeeEEEEeecCCcceEEEEcCCC---cEEEEEcCC
Q 019117 286 PVPECDIWFIKFSCDFHYNAAAIGNREG---KIFVWELQS 322 (346)
Q Consensus 286 ~~~~~~v~~~~~s~~~~~~~l~~~~~dg---~i~iwd~~~ 322 (346)
... .......|+||+ ..|+..+.++ .+++.+...
T Consensus 362 ~~~-~~~~~p~~spdg--~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 362 TDT-GLDESPSFAPNG--RMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred cCC-CCCCCceECCCC--CEEEEEEeCCCcEEEEEEECCC
Confidence 111 123345799999 4555555443 455556443
No 245
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.50 E-value=3.4e-09 Score=88.04 Aligned_cols=287 Identities=15% Similarity=0.136 Sum_probs=162.7
Q ss_pred ccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCC-----cEEEEEeccC-ceeeeEeeeecCCCccceEEEEEEE
Q 019117 20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGN-----RVTVYQCLEG-GVIAALQSYVDEDKEESFYTVSWAC 93 (346)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~-----~v~i~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~ 93 (346)
...+.....+. -.....-++++| ++++|.+.... +|..|.+... ..+..+..... ...... .++.
T Consensus 24 ~g~l~~~~~~~-~~~~Ps~l~~~~----~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~--~g~~p~--~i~~ 94 (345)
T PF10282_consen 24 TGTLTLVQTVA-EGENPSWLAVSP----DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS--GGSSPC--HIAV 94 (345)
T ss_dssp TTEEEEEEEEE-ESSSECCEEE-T----TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE--SSSCEE--EEEE
T ss_pred CCCceEeeeec-CCCCCceEEEEe----CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc--CCCCcE--EEEE
Confidence 34455444432 233445688888 56777766552 3999998876 55555554322 222333 3445
Q ss_pred cCCCCcEEEEee-cCCeEEEEEccC-cceeee---ec----------cCCCceEEEEEeCCCCceEEEee-CCCCEEEEe
Q 019117 94 NVDGIPFLVAGG-INGIIRVIDVSN-EKLHKS---FV----------GHGDSINEIRTQPLKPSLVVSAS-KDESVRLWN 157 (346)
Q Consensus 94 ~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd 157 (346)
+|+++ +|+++. .+|.|.++++.. +..... +. .......++.++| +++++++.. ....|.+|+
T Consensus 95 ~~~g~-~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~ 172 (345)
T PF10282_consen 95 DPDGR-FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYD 172 (345)
T ss_dssp CTTSS-EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEE
T ss_pred ecCCC-EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEE
Confidence 59999 666665 589999999976 433222 21 1234578999999 777666653 345799999
Q ss_pred cCCCe--eE--EEecccCCCCcceEEEEecCCCCcEE-EEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceec
Q 019117 158 VQTGI--CI--LIFAGAGGHRNEVLSVDFHPSDIYRI-ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP 232 (346)
Q Consensus 158 ~~~~~--~~--~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (346)
+.... .. ..+.. ......+.++|+| +++++ ++.-.++.|.++++................+...
T Consensus 173 ~~~~~~~l~~~~~~~~--~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~-------- 241 (345)
T PF10282_consen 173 IDDDTGKLTPVDSIKV--PPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF-------- 241 (345)
T ss_dssp E-TTS-TEEEEEEEEC--STTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS--------
T ss_pred EeCCCceEEEeecccc--ccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc--------
Confidence 97654 22 22221 3567789999999 65555 5556678899999983111111100000000000
Q ss_pred eEEEeecccceEEEEec--CCEEEEEe-ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEE-E
Q 019117 233 VFIASVHSNYVDCNRWL--GDFILSKS-VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA-I 308 (346)
Q Consensus 233 ~~~~~~~~~~i~~~~~~--~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~-~ 308 (346)
........+.++ |++|.++. ..++|.+|+++...- ....+..+.........++++|++ ++|+ +
T Consensus 242 -----~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g-----~l~~~~~~~~~G~~Pr~~~~s~~g--~~l~Va 309 (345)
T PF10282_consen 242 -----TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG-----TLTLVQTVPTGGKFPRHFAFSPDG--RYLYVA 309 (345)
T ss_dssp -----CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT-----TEEEEEEEEESSSSEEEEEE-TTS--SEEEEE
T ss_pred -----cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC-----ceEEEEEEeCCCCCccEEEEeCCC--CEEEEE
Confidence 001245566666 77766655 478899999953210 122344444444457899999999 4555 4
Q ss_pred EcCCCcEEEEEcC--CCCcceeee-e-eeeEEEEEe
Q 019117 309 GNREGKIFVWELQ--SSPPVLIAR-L-ICFSLHVKY 340 (346)
Q Consensus 309 ~~~dg~i~iwd~~--~~~~~~~~~-~-~~~~~~~~~ 340 (346)
...++.|.+|++. +|.+..... . -..+.||.|
T Consensus 310 ~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 310 NQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp ETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred ecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 4577899999774 555443332 1 223677776
No 246
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.47 E-value=1.9e-11 Score=101.03 Aligned_cols=186 Identities=19% Similarity=0.220 Sum_probs=147.4
Q ss_pred EEEEeecCCeEEEEEccCcceeeeecc---CCCceEEEEEe------C-------------CCCceEEEeeCCCCEEEEe
Q 019117 100 FLVAGGINGIIRVIDVSNEKLHKSFVG---HGDSINEIRTQ------P-------------LKPSLVVSASKDESVRLWN 157 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~------~-------------~~~~~l~s~~~d~~i~iwd 157 (346)
++|....||.+++|+..+++....+.. -++..++..|. | .+...++-|...|.|.+|+
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys 86 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYS 86 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEE
Confidence 999999999999999999887766642 23444555552 1 1345678888899999999
Q ss_pred cCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe
Q 019117 158 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 237 (346)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (346)
+..++....+... .|.+.|.++.++. +-..|.+++.|+.+..|+... ...+....
T Consensus 87 ~~~g~it~~~st~-~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~-----------------------~~~~~~~~ 141 (541)
T KOG4547|consen 87 VAGGEITAKLSTD-KHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKE-----------------------KVIIRIWK 141 (541)
T ss_pred ecCCeEEEEEecC-CCCCcceeeeccc-ccCceEecCCceeEEEEeccc-----------------------ceeeeeec
Confidence 9999888777632 6999999999996 888899999999999999988 33455666
Q ss_pred ecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeec-----CCcceEEEEc
Q 019117 238 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD-----FHYNAAAIGN 310 (346)
Q Consensus 238 ~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~~~l~~~~ 310 (346)
..+..+.+++++ +..+++++. .|++||+++.+ .+..|.+|.++|.++.|.-+ |. .+|.+..
T Consensus 142 ~~~~~~~sl~is~D~~~l~~as~--~ik~~~~~~ke---------vv~~ftgh~s~v~t~~f~~~~~g~~G~-~vLssa~ 209 (541)
T KOG4547|consen 142 EQKPLVSSLCISPDGKILLTASR--QIKVLDIETKE---------VVITFTGHGSPVRTLSFTTLIDGIIGK-YVLSSAA 209 (541)
T ss_pred cCCCccceEEEcCCCCEEEeccc--eEEEEEccCce---------EEEEecCCCcceEEEEEEEeccccccc-eeeeccc
Confidence 677778888888 558887764 79999999988 89999999999999999987 43 3555555
Q ss_pred CCCcEEEEEcCC
Q 019117 311 REGKIFVWELQS 322 (346)
Q Consensus 311 ~dg~i~iwd~~~ 322 (346)
.+.-+.+|-+..
T Consensus 210 ~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 210 AERGITVWVVEK 221 (541)
T ss_pred cccceeEEEEEc
Confidence 667788887765
No 247
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.46 E-value=1.9e-11 Score=104.84 Aligned_cols=195 Identities=14% Similarity=0.108 Sum_probs=121.9
Q ss_pred CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCC---CCEEEEecCCCeeEEEecccCCCCcceEEEEecC
Q 019117 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD---ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP 184 (346)
Q Consensus 108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 184 (346)
..|.++|..... .+.+..+...+...+|+| +++.|+.+..+ ..|++||+.+++...... +.+.+.+++|+|
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~----~~~~~~~~~~sp 243 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKVAS----FPGMNGAPAFSP 243 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEeec----CCCCccceEECC
Confidence 368888875443 344555667789999999 78877776543 479999998876544332 555677799999
Q ss_pred CCCcEE-EEEecCC--eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEee-
Q 019117 185 SDIYRI-ASCGMDN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV- 258 (346)
Q Consensus 185 ~~~~~l-~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~- 258 (346)
+++.| ++.+.++ .|.+||+.+... ..+..+........|+ ++.|+..+.
T Consensus 244 -Dg~~l~~~~~~~~~~~i~~~d~~~~~~------------------------~~l~~~~~~~~~~~~s~dg~~l~~~s~~ 298 (417)
T TIGR02800 244 -DGSKLAVSLSKDGNPDIYVMDLDGKQL------------------------TRLTNGPGIDTEPSWSPDGKSIAFTSDR 298 (417)
T ss_pred -CCCEEEEEECCCCCccEEEEECCCCCE------------------------EECCCCCCCCCCEEECCCCCEEEEEECC
Confidence 66544 4555554 488888876221 1122222223344555 677766554
Q ss_pred cC--eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCC---cEEEEEcCCCCcceeeeeee
Q 019117 259 DN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG---KIFVWELQSSPPVLIARLIC 333 (346)
Q Consensus 259 d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~ 333 (346)
++ .|.++|+.+++ ...+..+...+....|+|++ ++++.++.++ .|.+||+.++...... ...
T Consensus 299 ~g~~~iy~~d~~~~~----------~~~l~~~~~~~~~~~~spdg--~~i~~~~~~~~~~~i~~~d~~~~~~~~l~-~~~ 365 (417)
T TIGR02800 299 GGSPQIYMMDADGGE----------VRRLTFRGGYNASPSWSPDG--DLIAFVHREGGGFNIAVMDLDGGGERVLT-DTG 365 (417)
T ss_pred CCCceEEEEECCCCC----------EEEeecCCCCccCeEECCCC--CEEEEEEccCCceEEEEEeCCCCCeEEcc-CCC
Confidence 33 57777876554 12222233456678999999 5677766665 7899999886543222 122
Q ss_pred eEEEEEecCCCCC
Q 019117 334 FSLHVKYNPQSVY 346 (346)
Q Consensus 334 ~~~~~~~spdg~~ 346 (346)
......|+|||++
T Consensus 366 ~~~~p~~spdg~~ 378 (417)
T TIGR02800 366 LDESPSFAPNGRM 378 (417)
T ss_pred CCCCceECCCCCE
Confidence 3345689999863
No 248
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.46 E-value=1.1e-12 Score=120.92 Aligned_cols=193 Identities=12% Similarity=0.156 Sum_probs=148.2
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 108 (346)
+.|-..|.++.=+| ...+.+||+.|+ |++|....++.+..++.. ....|+.+.|+ .+|+ .+..+..||
T Consensus 2205 k~~v~~v~r~~sHp----~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~----g~s~vtr~~f~--~qGn-k~~i~d~dg 2273 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHP----SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA----GNSRVTRSRFN--HQGN-KFGIVDGDG 2273 (2439)
T ss_pred ecccCceeeecCCC----CCceEEecCCCceEEEEeccCCCeEEEeecc----Ccchhhhhhhc--ccCC-ceeeeccCC
Confidence 44556688888888 446889999998 999999988887777643 22566666666 7787 788888899
Q ss_pred eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEee---CCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCC
Q 019117 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS---KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS 185 (346)
Q Consensus 109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 185 (346)
.+.+|... .++....+.|+....++.|-. ..+++++ +++.+.+||..-......+. ..|.+.++++++.|
T Consensus 2274 ~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P- 2346 (2439)
T KOG1064|consen 2274 DLSLWQAS-PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAP- 2346 (2439)
T ss_pred ceeecccC-CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcC-
Confidence 99999976 677778888999999999974 5667654 57899999975332222222 27999999999999
Q ss_pred CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEE
Q 019117 186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLW 265 (346)
Q Consensus 186 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iw 265 (346)
...+|++|+.+|.|++||++..+. +..+.. +. ...++++++..|.++||
T Consensus 2347 ~~qllisggr~G~v~l~D~rqrql-----------------------~h~~~~-------~~-~~~~f~~~ss~g~ikIw 2395 (2439)
T KOG1064|consen 2347 KHQLLISGGRKGEVCLFDIRQRQL-----------------------RHTFQA-------LD-TREYFVTGSSEGNIKIW 2395 (2439)
T ss_pred cceEEEecCCcCcEEEeehHHHHH-----------------------HHHhhh-------hh-hhheeeccCcccceEEE
Confidence 999999999999999999998321 111111 11 16799999999999999
Q ss_pred cCCCCC
Q 019117 266 EPKMKE 271 (346)
Q Consensus 266 d~~~~~ 271 (346)
++....
T Consensus 2396 ~~s~~~ 2401 (2439)
T KOG1064|consen 2396 RLSEFG 2401 (2439)
T ss_pred Eccccc
Confidence 998765
No 249
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=1.3e-10 Score=99.59 Aligned_cols=214 Identities=13% Similarity=0.025 Sum_probs=117.4
Q ss_pred ccceEEEEEEEcCCCCcEEEEeec-CC--eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEE-EeeCCCC--EEEE
Q 019117 83 EESFYTVSWACNVDGIPFLVAGGI-NG--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVV-SASKDES--VRLW 156 (346)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~--i~iw 156 (346)
...+....|+ |||+ .|+..+. ++ .|.+||+.+++... +....+.....+|+| +++.|+ +.+.++. |.++
T Consensus 217 ~~~~~~p~wS--PDG~-~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 217 PEPLMSPAWS--PDGR-KLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSP-DGKKLALVLSKDGQPEIYVV 291 (448)
T ss_pred CCcccCceEC--CCCC-EEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECC-CCCEEEEEEeCCCCeEEEEE
Confidence 3445555665 9998 6665543 33 68888988876432 222233345789999 666554 5666675 7777
Q ss_pred ecCCCeeEEEecccCCCCcceEEEEecCCCCcEEE-EEecCCe--EEEEEccccceeeeeceeecCCCCCCCCccceece
Q 019117 157 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA-SCGMDNT--VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 233 (346)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (346)
|+.+++.. .+. .+.......+|+| +++.++ +...++. |.++|+...+ .
T Consensus 292 dl~tg~~~-~lt---~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~------------------------~ 342 (448)
T PRK04792 292 DIATKALT-RIT---RHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGK------------------------V 342 (448)
T ss_pred ECCCCCeE-ECc---cCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCC------------------------E
Confidence 88876643 333 3445667789999 666554 4444454 5555555421 1
Q ss_pred EEEeecccceEEEEec--CCEEEEEee-cC--eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEE
Q 019117 234 FIASVHSNYVDCNRWL--GDFILSKSV-DN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI 308 (346)
Q Consensus 234 ~~~~~~~~~i~~~~~~--~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~ 308 (346)
..+...........|+ |++++..+. ++ .|.++|+.+++.. .+ ... .......|+||++ .++.+
T Consensus 343 ~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-------~l---t~~-~~d~~ps~spdG~-~I~~~ 410 (448)
T PRK04792 343 SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-------VL---TST-RLDESPSVAPNGT-MVIYS 410 (448)
T ss_pred EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-------Ec---cCC-CCCCCceECCCCC-EEEEE
Confidence 1111111222334555 677766554 33 4555677765421 11 111 0112347999995 23444
Q ss_pred EcCCC--cEEEEEcCCCCcceeeee-eeeEEEEEecCC
Q 019117 309 GNREG--KIFVWELQSSPPVLIARL-ICFSLHVKYNPQ 343 (346)
Q Consensus 309 ~~~dg--~i~iwd~~~~~~~~~~~~-~~~~~~~~~spd 343 (346)
...++ .+++++... ........ .+.+...+|||-
T Consensus 411 ~~~~g~~~l~~~~~~G-~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 411 TTYQGKQVLAAVSIDG-RFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred EecCCceEEEEEECCC-CceEECcCCCCCcCCCccCCC
Confidence 44444 377778744 33333332 345667889883
No 250
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=1.5e-10 Score=98.50 Aligned_cols=218 Identities=14% Similarity=0.094 Sum_probs=125.7
Q ss_pred EEEEEEEcCCCCc--EEEEeecCC--eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEee-CCC----CEEEEe
Q 019117 87 YTVSWACNVDGIP--FLVAGGING--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDE----SVRLWN 157 (346)
Q Consensus 87 ~~~~~~~~~~~~~--~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~----~i~iwd 157 (346)
..-.|+ |||+. ++++...+| .|.+.++.+++..+.. ...+.....+|+| +++.|+..+ .+| .+..|+
T Consensus 188 ~sP~wS--PDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSP-DG~~Laf~s~~~g~~di~~~~~~ 263 (428)
T PRK01029 188 ITPTWM--HIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSP-RKKLLAFISDRYGNPDLFIQSFS 263 (428)
T ss_pred ccceEc--cCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECC-CCCEEEEEECCCCCcceeEEEee
Confidence 334555 99873 222444443 5777788877643332 2344456789999 776666544 223 344467
Q ss_pred cCCC---eeEEEecccCCCCcceEEEEecCCCCcEEE-EEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceece
Q 019117 158 VQTG---ICILIFAGAGGHRNEVLSVDFHPSDIYRIA-SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 233 (346)
Q Consensus 158 ~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (346)
+..+ +...... .........+|+| +++.|+ +...+|...+|.+..... ....
T Consensus 264 ~~~g~~g~~~~lt~---~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~--------------------g~~~ 319 (428)
T PRK01029 264 LETGAIGKPRRLLN---EAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPE--------------------GQSP 319 (428)
T ss_pred cccCCCCcceEeec---CCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECccc--------------------ccce
Confidence 6643 3332332 2223446789999 766555 444567666665432000 0012
Q ss_pred EEEeecccceEEEEec--CCEEEEEeec---CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEE-
Q 019117 234 FIASVHSNYVDCNRWL--GDFILSKSVD---NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA- 307 (346)
Q Consensus 234 ~~~~~~~~~i~~~~~~--~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~- 307 (346)
..+..+...+....|+ |+.|+..+.+ ..|.+||+.+++. ..+......+....|+||++ .|+
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----------~~Lt~~~~~~~~p~wSpDG~--~L~f 387 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----------YQLTTSPENKESPSWAIDSL--HLVY 387 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----------EEccCCCCCccceEECCCCC--EEEE
Confidence 2233334455667777 7777766543 4699999988752 12222223456789999994 444
Q ss_pred EEcC--CCcEEEEEcCCCCcceeeeeeeeEEEEEecCCC
Q 019117 308 IGNR--EGKIFVWELQSSPPVLIARLICFSLHVKYNPQS 344 (346)
Q Consensus 308 ~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg 344 (346)
+... ...|++||+.+++........+.....+|+|-.
T Consensus 388 ~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 388 SAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence 3332 457899999988766655555566778999864
No 251
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=3.4e-10 Score=93.24 Aligned_cols=277 Identities=14% Similarity=0.164 Sum_probs=169.0
Q ss_pred CceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee--------
Q 019117 34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG-------- 105 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~-------- 105 (346)
.+++..++++ +|+++|.+..+.+.|++...+..+.... . ..++++.|+ |-|. +|.+--
T Consensus 35 ~~~~v~~~S~----~G~lfA~~~~~~v~i~~~~~~~~~lt~~------~-~~~~~L~fS--P~g~-yL~T~e~~~i~~~~ 100 (566)
T KOG2315|consen 35 RPCNVFAYSN----NGRLFAYSDNQVVKVFEIATLKVVLCVE------L-KKTYDLLFS--PKGN-YLLTWEPWAIYGPK 100 (566)
T ss_pred CcceeEEEcC----CCcEEEEEcCCeEEEEEccCCcEEEEec------c-ceeeeeeec--cccc-ccccccccccccCC
Confidence 3466778888 7899999988889999988776322222 1 144445554 8887 776631
Q ss_pred --cCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEec
Q 019117 106 --INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 183 (346)
Q Consensus 106 --~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 183 (346)
..-.+.+|++.++.....+......-++..|++ +..+.+ ---.+.+.+|++...+.+..- -|...|+.+.++
T Consensus 101 ~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~-dEsl~a-rlv~nev~f~~~~~f~~~~~k----l~~~~i~~f~lS 174 (566)
T KOG2315|consen 101 NASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSI-DESLAA-RLVSNEVQFYDLGSFKTIQHK----LSVSGITMLSLS 174 (566)
T ss_pred CCCCCceeeeeeccceehhheehhhhcCccccccc-chhhhh-hhhcceEEEEecCCccceeee----eeccceeeEEec
Confidence 124578999998665555543333336888998 544333 222467999999875443332 267889999999
Q ss_pred CCC-C-cEEEE-----EecCCeEEEEEccccc-----------eeeeeceeecCCCCC----------------CCCccc
Q 019117 184 PSD-I-YRIAS-----CGMDNTVKIWSMKEFW-----------TYVEKSFTWTDLPSK----------------FPTKYV 229 (346)
Q Consensus 184 ~~~-~-~~l~s-----~~~d~~i~iwd~~~~~-----------~~~~~~~~~~~~~~~----------------~~~~~~ 229 (346)
| + . ..+++ .|.-+.+++|...... ....-.+.|...... +....+
T Consensus 175 p-gp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~L 253 (566)
T KOG2315|consen 175 P-GPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTL 253 (566)
T ss_pred C-CCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceE
Confidence 8 5 2 33332 2455689999877310 111112222211110 000000
Q ss_pred ------eeceEEEeecccceEEEEec--CCEEEE--EeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEee
Q 019117 230 ------QFPVFIASVHSNYVDCNRWL--GDFILS--KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC 299 (346)
Q Consensus 230 ------~~~~~~~~~~~~~i~~~~~~--~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 299 (346)
+.....--.-.++|.++.|+ +.-+++ |-.-..+.|||++.. ++ +...+++-.++-|+|
T Consensus 254 yll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~----------~v--~df~egpRN~~~fnp 321 (566)
T KOG2315|consen 254 YLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK----------PV--FDFPEGPRNTAFFNP 321 (566)
T ss_pred EEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC----------Ee--EeCCCCCccceEECC
Confidence 00011111235789999998 543433 344678999999854 23 333466778899999
Q ss_pred cCCcceEEEEcC---CCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117 300 DFHYNAAAIGNR---EGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 300 ~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~ 346 (346)
.| ++++.++- -|.|.|||+.+.+.+....... .+-+.|+|||+|
T Consensus 322 ~g--~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-tt~~eW~PdGe~ 368 (566)
T KOG2315|consen 322 HG--NIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN-TTVFEWSPDGEY 368 (566)
T ss_pred CC--CEEEEeecCCCCCceEEEeccchhhccccccCC-ceEEEEcCCCcE
Confidence 99 66766663 5789999999976555544443 355899999986
No 252
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.42 E-value=1.5e-12 Score=110.17 Aligned_cols=257 Identities=13% Similarity=0.172 Sum_probs=184.2
Q ss_pred CCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117 33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (346)
Q Consensus 33 ~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 112 (346)
..++.++..+| .|+-+|.++.-++.+.|+...-.......+. ..-.|..+.|+.+|.-. +-++......-.+
T Consensus 24 ~~~~~a~si~p----~grdi~lAsr~gl~i~dld~p~~ppr~l~h~---tpw~vad~qws~h~a~~-~wiVsts~qkaii 95 (1081)
T KOG0309|consen 24 DGGFNAVSINP----SGRDIVLASRQGLYIIDLDDPFTPPRWLHHI---TPWQVADVQWSPHPAKP-YWIVSTSNQKAII 95 (1081)
T ss_pred cCcccceeecc----ccchhhhhhhcCeEEEeccCCCCCceeeecc---CcchhcceecccCCCCc-eeEEecCcchhhh
Confidence 45678889998 7888999999999999987544333333222 23345567888777666 4444444566678
Q ss_pred EEccCc---ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe-eEEEecccCCCCcceEEEEecCCCCc
Q 019117 113 IDVSNE---KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-CILIFAGAGGHRNEVLSVDFHPSDIY 188 (346)
Q Consensus 113 wd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~ 188 (346)
|++... ..-..+.+|+..|+.+.|+|.....+++++-|-.+..||+++.. ++..+. .-......+.|+-.++.
T Consensus 96 wnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~---~w~s~asqVkwnyk~p~ 172 (1081)
T KOG0309|consen 96 WNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS---SWRSAASQVKWNYKDPN 172 (1081)
T ss_pred hhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee---cccccCceeeecccCcc
Confidence 998543 34456778999999999999999999999999999999998754 344443 23455677889875666
Q ss_pred EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEeecCeEEEE
Q 019117 189 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLW 265 (346)
Q Consensus 189 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iw 265 (346)
.+++ +..+.|.+||++.+ ..++..+.+|...|..+.|. ...+++.+.|++|++|
T Consensus 173 vlas-shg~~i~vwd~r~g----------------------s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw 229 (1081)
T KOG0309|consen 173 VLAS-SHGNDIFVWDLRKG----------------------STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFW 229 (1081)
T ss_pred hhhh-ccCCceEEEeccCC----------------------CcceEEecccceeeehHHHhhhhhhhhcccCCCCceeee
Confidence 5554 55678999999984 34677888899999999987 5689999999999999
Q ss_pred cCCCCCCCCC----------------------------------------------CccccccccccCCCcCeeEEEEee
Q 019117 266 EPKMKEQSPG----------------------------------------------EGTADILQKYPVPECDIWFIKFSC 299 (346)
Q Consensus 266 d~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~~v~~~~~s~ 299 (346)
|......... .....+++.+.+|...|...-|-.
T Consensus 230 ~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~ 309 (1081)
T KOG0309|consen 230 DYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRK 309 (1081)
T ss_pred cccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhh
Confidence 9865432110 112345667777777665544432
Q ss_pred --------cCCcceEEEEcCCCcEEEEEcCCC
Q 019117 300 --------DFHYNAAAIGNREGKIFVWELQSS 323 (346)
Q Consensus 300 --------~~~~~~l~~~~~dg~i~iwd~~~~ 323 (346)
|.+.-.|++=+.|..+++|-+.+.
T Consensus 310 r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 310 RKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred cccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 222247999999999999998653
No 253
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.42 E-value=1.5e-11 Score=95.10 Aligned_cols=226 Identities=15% Similarity=0.191 Sum_probs=141.5
Q ss_pred cceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc-----eeeeeccCC------------CceEEEEEeCC-CCceEE
Q 019117 84 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-----LHKSFVGHG------------DSINEIRTQPL-KPSLVV 145 (346)
Q Consensus 84 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~-~~~~l~ 145 (346)
+-+.++.|. ..|. +|++|..+|.|.++.-.... ....++.|. ..|..+.|.+. +...++
T Consensus 26 diis~vef~--~~Ge-~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 26 DIISAVEFD--HYGE-RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred cceeeEEee--cccc-eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 345555555 8898 99999999999999743322 223344443 46888999873 234677
Q ss_pred EeeCCCCEEEEecCCCeeEE---------------Eecc------------------cCCCCcceEEEEecCCCCcEEEE
Q 019117 146 SASKDESVRLWNVQTGICIL---------------IFAG------------------AGGHRNEVLSVDFHPSDIYRIAS 192 (346)
Q Consensus 146 s~~~d~~i~iwd~~~~~~~~---------------~~~~------------------~~~~~~~v~~~~~~~~~~~~l~s 192 (346)
....|.+|++|.++...... .++. ..+|..-|+++.++. +...+++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lS 181 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLS 181 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEee
Confidence 77889999999886322111 0000 016888899999996 7777777
Q ss_pred EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEeecCeEEEEcCCC
Q 019117 193 CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKM 269 (346)
Q Consensus 193 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~ 269 (346)
+ .|=.|.+|++.-... ++...+ .....+..-...|++..|+ .+.++-.+..|+|++.|++.
T Consensus 182 A-DdLRINLWnlei~d~----sFnIVD-----------IKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 182 A-DDLRINLWNLEIIDQ----SFNIVD-----------IKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred c-cceeeeeccccccCC----ceeEEE-----------ccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence 6 477899999876221 111000 0011122223457777777 56888889999999999985
Q ss_pred CCC-------CCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC-CCCcceeeeee
Q 019117 270 KEQ-------SPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ-SSPPVLIARLI 332 (346)
Q Consensus 270 ~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~ 332 (346)
... ..+...+....-+..--..|..+.|+++| +++++-.. -+|++||+. ..+++..+.+.
T Consensus 246 ~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG--ryilsRDy-ltvk~wD~nme~~pv~t~~vh 313 (433)
T KOG1354|consen 246 SALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG--RYILSRDY-LTVKLWDLNMEAKPVETYPVH 313 (433)
T ss_pred hhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC--cEEEEecc-ceeEEEeccccCCcceEEeeh
Confidence 421 00000111111222233578899999999 78887654 589999994 45566555543
No 254
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.42 E-value=7.6e-10 Score=84.09 Aligned_cols=237 Identities=15% Similarity=0.119 Sum_probs=141.8
Q ss_pred CccEEEEEcCCcEEEEEeccCc--eeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeec
Q 019117 48 YFNVFATVGGNRVTVYQCLEGG--VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV 125 (346)
Q Consensus 48 ~~~~la~~~~~~v~i~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 125 (346)
+|++||...+..|.|-..+++- .+...+. .......-.-++|+ ||+. +||.+...|+|+++|+...+ +..+.
T Consensus 8 ~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqV--pkD~~PQWRkl~WS--pD~t-lLa~a~S~G~i~vfdl~g~~-lf~I~ 81 (282)
T PF15492_consen 8 DGKLLAILQDQCIEIRSAKDDFSSIIGKCQV--PKDPNPQWRKLAWS--PDCT-LLAYAESTGTIRVFDLMGSE-LFVIP 81 (282)
T ss_pred CCcEEEEEeccEEEEEeccCCchheeEEEec--CCCCCchheEEEEC--CCCc-EEEEEcCCCeEEEEecccce-eEEcC
Confidence 7899999977777777655432 2333332 22334455567776 9999 99999999999999986533 33332
Q ss_pred c-------CCCceEEEEEeCCC-----CceEEEeeCCCCEEEEecCC-----CeeEEEecccCCCCcceEEEEecCCCCc
Q 019117 126 G-------HGDSINEIRTQPLK-----PSLVVSASKDESVRLWNVQT-----GICILIFAGAGGHRNEVLSVDFHPSDIY 188 (346)
Q Consensus 126 ~-------~~~~v~~~~~~~~~-----~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 188 (346)
. -...|..+.|.+.. ...|++-..+|.++-|-+.. .+....+.-...+...|.++.++| ..+
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~ 160 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHR 160 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CCC
Confidence 2 23567777776522 23566667788887776532 233444443334578999999999 777
Q ss_pred EEEEEecCCe-----------EEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEE-EE
Q 019117 189 RIASCGMDNT-----------VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFIL-SK 256 (346)
Q Consensus 189 ~l~s~~~d~~-----------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~-~~ 256 (346)
+|+.||.... +..|.+-+.. +.+.. +.
T Consensus 161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~-----------------------------------------Pyyk~v~~ 199 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDS-----------------------------------------PYYKQVTS 199 (282)
T ss_pred EEEEeccCCCCCccccccccCceEEEEcCCC-----------------------------------------CcEEEccc
Confidence 7777764322 2223222210 11111 11
Q ss_pred eecCe------EEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee
Q 019117 257 SVDNE------IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR 330 (346)
Q Consensus 257 ~~d~~------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (346)
..|+. -.+|.+-+.+ ...........|..|..|||+ ..||+...+|.|.+|++.+-.+.....
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~---------~fs~~~~~~d~i~kmSlSPdg--~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 200 SEDDITASSKRRGLLRIPSFK---------FFSRQGQEQDGIFKMSLSPDG--SLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred cCccccccccccceeecccee---------eeeccccCCCceEEEEECCCC--CEEEEEEcCCeEEEEecCcchhhcccc
Confidence 11111 1222222111 011112234579999999999 799999999999999999987766665
Q ss_pred eeeeEEEEEecCC
Q 019117 331 LICFSLHVKYNPQ 343 (346)
Q Consensus 331 ~~~~~~~~~~spd 343 (346)
....+-.=.++|+
T Consensus 269 ~~eqPg~~e~np~ 281 (282)
T PF15492_consen 269 QDEQPGYNEINPD 281 (282)
T ss_pred hhhCCCCccCCCC
Confidence 5544433444443
No 255
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1.1e-10 Score=96.04 Aligned_cols=250 Identities=17% Similarity=0.224 Sum_probs=156.8
Q ss_pred EEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE-----eecCCeEE
Q 019117 37 YAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA-----GGINGIIR 111 (346)
Q Consensus 37 ~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~-----~~~dg~i~ 111 (346)
++..|++ |..+.|--..+.+.+|+...-+... . .-+...+....+++.|... .+|+ .+.-..|+
T Consensus 129 W~~qfs~----dEsl~arlv~nev~f~~~~~f~~~~--~----kl~~~~i~~f~lSpgp~~~-~vAvyvPe~kGaPa~vr 197 (566)
T KOG2315|consen 129 WVPQFSI----DESLAARLVSNEVQFYDLGSFKTIQ--H----KLSVSGITMLSLSPGPEPP-FVAVYVPEKKGAPASVR 197 (566)
T ss_pred ccccccc----chhhhhhhhcceEEEEecCCcccee--e----eeeccceeeEEecCCCCCc-eEEEEccCCCCCCcEEE
Confidence 5788887 4566666666669999977633221 1 1255667777777554444 5554 34556899
Q ss_pred EEEccCcceeeeecc---CCCceEEEEEeCCCCceEEEeeC--C---------CCEEEEecCCCeeEEEecccCCCCcce
Q 019117 112 VIDVSNEKLHKSFVG---HGDSINEIRTQPLKPSLVVSASK--D---------ESVRLWNVQTGICILIFAGAGGHRNEV 177 (346)
Q Consensus 112 iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~--d---------~~i~iwd~~~~~~~~~~~~~~~~~~~v 177 (346)
||....+.....+.. -...=..+.|++-+..+|+.++. | .++++.+++.......+. ..++|
T Consensus 198 i~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~----k~GPV 273 (566)
T KOG2315|consen 198 IYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL----KEGPV 273 (566)
T ss_pred EeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC----CCCCc
Confidence 998763322111110 11122367788733334443332 2 468888887445555554 68999
Q ss_pred EEEEecCCCCcEEEE--EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEE
Q 019117 178 LSVDFHPSDIYRIAS--CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI 253 (346)
Q Consensus 178 ~~~~~~~~~~~~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l 253 (346)
.++.|+| ++..++. |-+-..+.|||++. .+++.+ -+++=.++-|+ |+++
T Consensus 274 hdv~W~~-s~~EF~VvyGfMPAkvtifnlr~------------------------~~v~df--~egpRN~~~fnp~g~ii 326 (566)
T KOG2315|consen 274 HDVTWSP-SGREFAVVYGFMPAKVTIFNLRG------------------------KPVFDF--PEGPRNTAFFNPHGNII 326 (566)
T ss_pred eEEEECC-CCCEEEEEEecccceEEEEcCCC------------------------CEeEeC--CCCCccceEECCCCCEE
Confidence 9999999 6644443 44567899999987 233333 34555677777 8898
Q ss_pred EEEeec---CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc------CCCcEEEEEcCCCC
Q 019117 254 LSKSVD---NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN------REGKIFVWELQSSP 324 (346)
Q Consensus 254 ~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~------~dg~i~iwd~~~~~ 324 (346)
+.+|.+ |.|-|||..+.+ .+..+... .-+-+.|+||| .++++++ -|+.++||+.. |.
T Consensus 327 ~lAGFGNL~G~mEvwDv~n~K---------~i~~~~a~--~tt~~eW~PdG--e~flTATTaPRlrvdNg~Kiwhyt-G~ 392 (566)
T KOG2315|consen 327 LLAGFGNLPGDMEVWDVPNRK---------LIAKFKAA--NTTVFEWSPDG--EYFLTATTAPRLRVDNGIKIWHYT-GS 392 (566)
T ss_pred EEeecCCCCCceEEEeccchh---------hccccccC--CceEEEEcCCC--cEEEEEeccccEEecCCeEEEEec-Cc
Confidence 888874 789999999866 55555543 34568999999 5666665 38899999985 55
Q ss_pred cceeeeeeeeEEEEEecC
Q 019117 325 PVLIARLICFSLHVKYNP 342 (346)
Q Consensus 325 ~~~~~~~~~~~~~~~~sp 342 (346)
++.....+.....+.|-|
T Consensus 393 ~l~~~~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 393 LLHEKMFKSELLQVEWRP 410 (566)
T ss_pred eeehhhhhHhHhheeeee
Confidence 444444443345566654
No 256
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.40 E-value=9.4e-09 Score=85.45 Aligned_cols=255 Identities=16% Similarity=0.147 Sum_probs=147.7
Q ss_pred cEEEEEec-cCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec----CCeEEEEEccCc--c--eeeeeccCCC
Q 019117 59 RVTVYQCL-EGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI----NGIIRVIDVSNE--K--LHKSFVGHGD 129 (346)
Q Consensus 59 ~v~i~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~--~--~~~~~~~~~~ 129 (346)
+|.+|++. +...+..+.... ......-+++ +|+++ +|.+... ++.|..|++... + .+........
T Consensus 14 gI~~~~~d~~~g~l~~~~~~~---~~~~Ps~l~~--~~~~~-~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~ 87 (345)
T PF10282_consen 14 GIYVFRFDEETGTLTLVQTVA---EGENPSWLAV--SPDGR-RLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS 87 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEEE---ESSSECCEEE---TTSS-EEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred cEEEEEEcCCCCCceEeeeec---CCCCCceEEE--EeCCC-EEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC
Confidence 59999883 333444444322 1222233454 48888 7777765 579999998764 3 3334443445
Q ss_pred ceEEEEEeCCCCceEEEee-CCCCEEEEecCC-CeeEEE---ecc-------cCCCCcceEEEEecCCCCcEEEEEe-cC
Q 019117 130 SINEIRTQPLKPSLVVSAS-KDESVRLWNVQT-GICILI---FAG-------AGGHRNEVLSVDFHPSDIYRIASCG-MD 196 (346)
Q Consensus 130 ~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~-~~~~~~---~~~-------~~~~~~~v~~~~~~~~~~~~l~s~~-~d 196 (346)
....++++| ++.+|+++. .+|.|.++++.. +..... +.. .........++.++| +++++++.. ..
T Consensus 88 ~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~ 165 (345)
T PF10282_consen 88 SPCHIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGA 165 (345)
T ss_dssp CEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTT
T ss_pred CcEEEEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCC
Confidence 567899999 666666665 589999999986 433322 210 001235578899999 777666653 34
Q ss_pred CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe-ecccceEEEEec--CCEEEEEe-ecCeEEEEcCCCCCC
Q 019117 197 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS-VHSNYVDCNRWL--GDFILSKS-VDNEIVLWEPKMKEQ 272 (346)
Q Consensus 197 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~--~~~l~~~~-~d~~i~iwd~~~~~~ 272 (346)
..|.+|++......+.. ...+. .....-+.+.|+ ++++.+.. .+++|.++++....-
T Consensus 166 D~v~~~~~~~~~~~l~~-------------------~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g 226 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTP-------------------VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG 226 (345)
T ss_dssp TEEEEEEE-TTS-TEEE-------------------EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred CEEEEEEEeCCCceEEE-------------------eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC
Confidence 58999999873311110 11111 223445667776 66665554 488899999882211
Q ss_pred CCCCccccccccccC------CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC--CCCcceeeeee--e-eEEEEEec
Q 019117 273 SPGEGTADILQKYPV------PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ--SSPPVLIARLI--C-FSLHVKYN 341 (346)
Q Consensus 273 ~~~~~~~~~~~~~~~------~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~--~-~~~~~~~s 341 (346)
....++.... .......++++||++ .+.++....+.|.+|++. ++++....... + .+..++++
T Consensus 227 -----~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~-~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s 300 (345)
T PF10282_consen 227 -----SLTEIQTISTLPEGFTGENAPAEIAISPDGR-FLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFS 300 (345)
T ss_dssp -----EEEEEEEEESCETTSCSSSSEEEEEE-TTSS-EEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-
T ss_pred -----ceeEEEEeeeccccccccCCceeEEEecCCC-EEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEe
Confidence 0111111111 112578899999995 345556678899999993 35544433332 2 37899999
Q ss_pred CCCCC
Q 019117 342 PQSVY 346 (346)
Q Consensus 342 pdg~~ 346 (346)
|||+|
T Consensus 301 ~~g~~ 305 (345)
T PF10282_consen 301 PDGRY 305 (345)
T ss_dssp TTSSE
T ss_pred CCCCE
Confidence 99985
No 257
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.40 E-value=4e-09 Score=85.73 Aligned_cols=269 Identities=11% Similarity=-0.041 Sum_probs=149.7
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEcC-----------CcEEEEEeccCceeeeEeeeecCCCccceEEEEE
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGG-----------NRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSW 91 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~-----------~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 91 (346)
.+.+.++..-..+- .+ ++| +++.|+++.. |.|.+||..+.+.+..+..-..+.-........+
T Consensus 37 ~~v~g~i~~G~~P~-~~-~sp----Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~ 110 (352)
T TIGR02658 37 GRVLGMTDGGFLPN-PV-VAS----DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMT 110 (352)
T ss_pred CEEEEEEEccCCCc-ee-ECC----CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceE
Confidence 44555554333332 24 888 6777766665 3499999999998887764211100012222356
Q ss_pred EEcCCCCcEEEEee-c-CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEe--
Q 019117 92 ACNVDGIPFLVAGG-I-NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF-- 167 (346)
Q Consensus 92 ~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-- 167 (346)
.++|||+ +|+... . +..|.+.|+.+++.+..+.-.. ...-...++ ...+ +-+.||......+.+......-
T Consensus 111 ~ls~dgk-~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e--~~~~-~~~~Dg~~~~v~~d~~g~~~~~~~ 185 (352)
T TIGR02658 111 SLTPDNK-TLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN--DTFF-MHCRDGSLAKVGYGTKGNPKIKPT 185 (352)
T ss_pred EECCCCC-EEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC--CccE-EEeecCceEEEEecCCCceEEeee
Confidence 6679999 777665 3 7899999999999988887422 222222222 1222 2234555544433321111110
Q ss_pred cccCC-----CCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccc
Q 019117 168 AGAGG-----HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 242 (346)
Q Consensus 168 ~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (346)
..... ...+ .|.+.++.+++.... |+|.+.|+................ ....-...+..
T Consensus 186 ~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~-----------~~~~~~wrP~g 249 (352)
T TIGR02658 186 EVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTE-----------AEKADGWRPGG 249 (352)
T ss_pred eeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccc-----------cccccccCCCc
Confidence 00000 0111 334435666666655 999999976522211111100000 00000123333
Q ss_pred eEEEEec--CCEEEEEe----------ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc
Q 019117 243 VDCNRWL--GDFILSKS----------VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN 310 (346)
Q Consensus 243 i~~~~~~--~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~ 310 (346)
+.-++++ ++.+.+.. ..+.|.++|..+.+ .+..+.. ...+..++++||++. +|++..
T Consensus 250 ~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k---------vi~~i~v-G~~~~~iavS~Dgkp-~lyvtn 318 (352)
T TIGR02658 250 WQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK---------RLRKIEL-GHEIDSINVSQDAKP-LLYALS 318 (352)
T ss_pred ceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe---------EEEEEeC-CCceeeEEECCCCCe-EEEEeC
Confidence 3446665 66666532 22579999999887 5555544 347899999999942 555444
Q ss_pred -CCCcEEEEEcCCCCcceee
Q 019117 311 -REGKIFVWELQSSPPVLIA 329 (346)
Q Consensus 311 -~dg~i~iwd~~~~~~~~~~ 329 (346)
.++.|.++|..+++.+...
T Consensus 319 ~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 319 TGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCCcEEEEECcCCeEEeee
Confidence 6888999999999877665
No 258
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.40 E-value=3.8e-10 Score=84.64 Aligned_cols=202 Identities=13% Similarity=0.070 Sum_probs=139.4
Q ss_pred EEEEeecCCeEEEEEccCcce-eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCc--c
Q 019117 100 FLVAGGINGIIRVIDVSNEKL-HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN--E 176 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~ 176 (346)
+|+.|+..|...+|...+.+. .+....|...|+-+.-..+...-+..++.|.++++.++.-+...... |.. .
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~-----h~~~~~ 160 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV-----HNQNLT 160 (344)
T ss_pred EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee-----eccccc
Confidence 899999999999999986653 33444455544433322223345667788999999988644332222 322 3
Q ss_pred eEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEE
Q 019117 177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL 254 (346)
Q Consensus 177 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~ 254 (346)
+.++++++ ++.++++.+....|..|.+........+ ......++.-.+..|+ ...+|
T Consensus 161 ~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~--------------------~~~a~t~D~gF~~S~s~~~~~FA 219 (344)
T KOG4532|consen 161 QNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIEN--------------------IYEAPTSDHGFYNSFSENDLQFA 219 (344)
T ss_pred eeeeEEcC-CCceEEEecCCCcceEEEeCCccceeee--------------------eEecccCCCceeeeeccCcceEE
Confidence 78999998 9999999999999999999873221111 1223344445667777 66899
Q ss_pred EEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeee
Q 019117 255 SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL 331 (346)
Q Consensus 255 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 331 (346)
++..||++.|||++...... .....+-+.|.+.+..+.|++-|.-.+|...-.-+.+.+-|++++...+.+..
T Consensus 220 v~~Qdg~~~I~DVR~~~tpm----~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i 292 (344)
T KOG4532|consen 220 VVFQDGTCAIYDVRNMATPM----AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI 292 (344)
T ss_pred EEecCCcEEEEEecccccch----hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEec
Confidence 99999999999999765311 11222334588999999999877656777777778999999999875554443
No 259
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.39 E-value=8.1e-12 Score=92.90 Aligned_cols=225 Identities=15% Similarity=0.159 Sum_probs=128.8
Q ss_pred ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee-
Q 019117 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG- 105 (346)
Q Consensus 28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~- 105 (346)
.+..|.++-.+-+.+. .++.++++..|+ +.+++.+.... +.......+-+ -.+.+.. ..++ ++.++.
T Consensus 84 ~~a~~sep~p~~~~s~----~~t~V~~~~~dg~~~v~s~~~~~~---~~~~i~~~~~~-~as~~~~--~~~~-~i~s~~~ 152 (319)
T KOG4714|consen 84 VLAKNSEIDPNDACTM----TDNRVCIGYADGSLAVFSTDKDLA---LMSRIPSIHSG-SASRKIC--RHGN-SILSGGC 152 (319)
T ss_pred eeeccCCCCCcccccc----cCCceEecCCCceEEEEechHHHh---hhhhccccccc-cccccee--eccc-EEecCCc
Confidence 3334444433333333 457899999998 88888654211 11100000111 1112222 3343 444432
Q ss_pred ----cCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEE-EecccCCCCcceEEE
Q 019117 106 ----INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL-IFAGAGGHRNEVLSV 180 (346)
Q Consensus 106 ----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~ 180 (346)
.-+..++|+++..+....-......|.+++-+|...+++++|+.||.+-+||.+...... .++ .|+.++..+
T Consensus 153 g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~---ahk~~i~eV 229 (319)
T KOG4714|consen 153 GNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLK---AHKAEIWEV 229 (319)
T ss_pred ceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHH---Hhhhhhhhe
Confidence 123455666554332222222334599999999777788899999999999999774333 344 799999999
Q ss_pred EecCCCCcEEEEEecCCeEEEEEccccceeee-eceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeec
Q 019117 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVE-KSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVD 259 (346)
Q Consensus 181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d 259 (346)
-|+|.++..|++++.||.+-.||....-.... .........+..+.+.....-..+......|.++...|..|++|+.-
T Consensus 230 ~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~ 309 (319)
T KOG4714|consen 230 HFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDA 309 (319)
T ss_pred eccCCCchheeEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEecccc
Confidence 99999999999999999999999885111100 00000000011111111111112222334466666669999999998
Q ss_pred CeEEEEc
Q 019117 260 NEIVLWE 266 (346)
Q Consensus 260 ~~i~iwd 266 (346)
+.|++++
T Consensus 310 eaIyl~~ 316 (319)
T KOG4714|consen 310 EAIYLTR 316 (319)
T ss_pred ceEEEec
Confidence 9888875
No 260
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=2.6e-10 Score=98.09 Aligned_cols=231 Identities=10% Similarity=0.026 Sum_probs=128.8
Q ss_pred EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC---CeEEEEEccCcceeeeeccCCCceEEEEE
Q 019117 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN---GIIRVIDVSNEKLHKSFVGHGDSINEIRT 136 (346)
Q Consensus 60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 136 (346)
|.++|..... .+.+.. +...+....|+ |||+ .|+..+.+ ..|.+||+.+++... +....+.+....|
T Consensus 181 l~~~d~~g~~-~~~l~~-----~~~~~~~p~wS--pDG~-~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~ 250 (430)
T PRK00178 181 LQRSDYDGAR-AVTLLQ-----SREPILSPRWS--PDGK-RIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAW 250 (430)
T ss_pred EEEECCCCCC-ceEEec-----CCCceeeeeEC--CCCC-EEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEE
Confidence 6666755433 233322 34455555665 9998 77665433 368999998876543 2223344567899
Q ss_pred eCCCCceEE-EeeCCC--CEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEE-EEEecCC--eEEEEEcccccee
Q 019117 137 QPLKPSLVV-SASKDE--SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI-ASCGMDN--TVKIWSMKEFWTY 210 (346)
Q Consensus 137 ~~~~~~~l~-s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~--~i~iwd~~~~~~~ 210 (346)
+| +++.|+ +.+.++ .|.+||+.+++.. .+. .+........|+| +++.+ ++...++ .|.++|+...+.
T Consensus 251 Sp-DG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt---~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~- 323 (430)
T PRK00178 251 SP-DGSKLAFVLSKDGNPEIYVMDLASRQLS-RVT---NHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRA- 323 (430)
T ss_pred CC-CCCEEEEEEccCCCceEEEEECCCCCeE-Ecc---cCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCE-
Confidence 99 666655 555555 5888899877654 343 3455566788999 66555 4444444 466666655221
Q ss_pred eeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeec-C--eEEEEcCCCCCCCCCCccccccccc
Q 019117 211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD-N--EIVLWEPKMKEQSPGEGTADILQKY 285 (346)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~ 285 (346)
..+...........|+ |+.++..+.+ + .|.++|+.+++.. .+..
T Consensus 324 -----------------------~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-------~lt~- 372 (430)
T PRK00178 324 -----------------------ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-------ILTD- 372 (430)
T ss_pred -----------------------EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-------EccC-
Confidence 0111111112234455 6777666543 2 5888898876521 1111
Q ss_pred cCCCcCeeEEEEeecCCcceEEEEc-CC--CcEEEEEcCCCCcceeeeeeeeEEEEEecCC
Q 019117 286 PVPECDIWFIKFSCDFHYNAAAIGN-RE--GKIFVWELQSSPPVLIARLICFSLHVKYNPQ 343 (346)
Q Consensus 286 ~~~~~~v~~~~~s~~~~~~~l~~~~-~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~spd 343 (346)
. .......|+||++ .++..+ .+ ..|.++++..+.........+.+...+|+|-
T Consensus 373 ~---~~~~~p~~spdg~--~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 373 T---SLDESPSVAPNGT--MLIYATRQQGRGVLMLVSINGRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred C---CCCCCceECCCCC--EEEEEEecCCceEEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence 1 1112457999994 454443 33 3577778755433222222345666788874
No 261
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.38 E-value=2.5e-11 Score=92.80 Aligned_cols=266 Identities=17% Similarity=0.219 Sum_probs=162.9
Q ss_pred CCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc-----eeeeEeeeecC-------CCccceEEEEEEEcCCCC
Q 019117 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG-----VIAALQSYVDE-------DKEESFYTVSWACNVDGI 98 (346)
Q Consensus 32 h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~-----~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~ 98 (346)
..+.|++|.|.. .|.+||+|..+| |.+|...... -...++.|..+ .-.+.|..+.|. .+.++
T Consensus 25 ead~ItaVefd~----tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~-~~t~r 99 (460)
T COG5170 25 EADKITAVEFDE----TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWF-DDTGR 99 (460)
T ss_pred ccceeeEEEecc----ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeee-cCCCc
Confidence 356799999987 789999999888 9888755432 11223333211 124577888886 34555
Q ss_pred cEEEEeecCCeEEEEEccCcc-------------------------------------ee-----eee-ccCCCceEEEE
Q 019117 99 PFLVAGGINGIIRVIDVSNEK-------------------------------------LH-----KSF-VGHGDSINEIR 135 (346)
Q Consensus 99 ~~l~~~~~dg~i~iwd~~~~~-------------------------------------~~-----~~~-~~~~~~v~~~~ 135 (346)
..++..+.|.+|++|.+.... .+ +.+ ..|.--++++.
T Consensus 100 ~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS 179 (460)
T COG5170 100 NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSIS 179 (460)
T ss_pred ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeee
Confidence 577777789999999874320 00 111 34677788999
Q ss_pred EeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCC-----CcceEEEEecCCCCcEEEEEecCCeEEEEEcccccee
Q 019117 136 TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGH-----RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTY 210 (346)
Q Consensus 136 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 210 (346)
|+. +...++++ +|=.|.+|++.-......+.....| ..-|++..|+|.....+.-.+..|.|++-|++....-
T Consensus 180 ~Ns-D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 180 FNS-DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred ecC-chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence 998 66666665 4678999998743222222111123 2468899999977788888888999999999962211
Q ss_pred eeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCC
Q 019117 211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP 288 (346)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 288 (346)
......+. ....+....-+..-...|..+.|+ |+++++-+. -+|+|||.+..+. ++.+.+.|
T Consensus 258 dn~~klfe-------~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~--------pikTi~~h 321 (460)
T COG5170 258 DNSKKLFE-------LTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN--------PIKTIPMH 321 (460)
T ss_pred cCchhhhh-------hccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC--------CceeechH
Confidence 10000000 000001111122233557778888 667776554 5899999998763 33333222
Q ss_pred ------------CcCe---eEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117 289 ------------ECDI---WFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (346)
Q Consensus 289 ------------~~~v---~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~ 322 (346)
...| ..+.||-|. ..+++|+..+..-++-+.+
T Consensus 322 ~~l~~~l~d~YEnDaifdkFeisfSgd~--~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 322 CDLMDELNDVYENDAIFDKFEISFSGDD--KHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred HHHHHHHHhhhhccceeeeEEEEecCCc--ccccccccccceeeecccc
Confidence 1122 346677776 6788888888777776443
No 262
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=2.2e-10 Score=97.98 Aligned_cols=132 Identities=11% Similarity=0.102 Sum_probs=96.3
Q ss_pred ccceeeeeecccCCCceEEEEEEeecC-------C-CccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEE
Q 019117 20 KREYRVTNKLQEGKRPLYAVVFNFIDS-------R-YFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVS 90 (346)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~~~~~p~~~-------~-~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 90 (346)
...+++++.+..|+..|+.+.|.|.+. . ..-++|++.-.| |.+||...+..+..++. +..++..++
T Consensus 42 s~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~-----~~~~~qdl~ 116 (1062)
T KOG1912|consen 42 SRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSH-----SNDSVQDLC 116 (1062)
T ss_pred hhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcC-----CCcchhhee
Confidence 356788888999999999999998321 1 234677777666 99999998887777764 667778899
Q ss_pred EEEcCCCC-cEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEE
Q 019117 91 WACNVDGI-PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLW 156 (346)
Q Consensus 91 ~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iw 156 (346)
|....+.. .+|++-.....+.+|+..+|+....+........|+.+.|.+...+..-+..|.+.+-
T Consensus 117 W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~ 183 (1062)
T KOG1912|consen 117 WVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSC 183 (1062)
T ss_pred eeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEE
Confidence 98765443 5777777788999999999998887776566666777777655555544444444333
No 263
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.36 E-value=1.3e-08 Score=82.89 Aligned_cols=252 Identities=9% Similarity=-0.045 Sum_probs=146.0
Q ss_pred CcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee---------cCCeEEEEEccCcceeeeeccCC
Q 019117 58 NRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG---------INGIIRVIDVSNEKLHKSFVGHG 128 (346)
Q Consensus 58 ~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~ 128 (346)
+.|.+.|..+++.+..+..-. .-..+ .+|||+.+.++.+ .+..|.+||..+.+.+..+....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~------~P~~~---~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~ 97 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGF------LPNPV---VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE 97 (352)
T ss_pred ceEEEEECCCCEEEEEEEccC------CCcee---ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC
Confidence 459999999988877776421 11112 4599994444444 57899999999999998887422
Q ss_pred C-------ceEEEEEeCCCCceEEEee-C-CCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeE
Q 019117 129 D-------SINEIRTQPLKPSLVVSAS-K-DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTV 199 (346)
Q Consensus 129 ~-------~v~~~~~~~~~~~~l~s~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 199 (346)
. ....++++| ++++++... . +..|.+.|+.+++.+.++.. .+...-...++ +..+ .-+.||..
T Consensus 98 ~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v----p~~~~vy~t~e-~~~~--~~~~Dg~~ 169 (352)
T TIGR02658 98 GPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV----PDCYHIFPTAN-DTFF--MHCRDGSL 169 (352)
T ss_pred CchhhccCccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeC----CCCcEEEEecC-CccE--EEeecCce
Confidence 2 334889999 777777655 3 78999999999999998873 22222222221 2222 22234544
Q ss_pred EEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEe-cCCEEEEEeecCeEEEEcCCCCCCCCCCcc
Q 019117 200 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW-LGDFILSKSVDNEIVLWEPKMKEQSPGEGT 278 (346)
Q Consensus 200 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 278 (346)
....+............... . ...++. .++ .... .+.++.+... |+|.+.|+...+..... .
T Consensus 170 ~~v~~d~~g~~~~~~~~vf~------~--~~~~v~---~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~-~ 232 (352)
T TIGR02658 170 AKVGYGTKGNPKIKPTEVFH------P--EDEYLI---NHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLP-A 232 (352)
T ss_pred EEEEecCCCceEEeeeeeec------C--Cccccc---cCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecc-e
Confidence 44333331110000000000 0 000000 111 0111 2666666555 99999997654321111 0
Q ss_pred ccccccc----cCCCcCeeEEEEeecCCcceEEEE----------cCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCC
Q 019117 279 ADILQKY----PVPECDIWFIKFSCDFHYNAAAIG----------NREGKIFVWELQSSPPVLIARLICFSLHVKYNPQS 344 (346)
Q Consensus 279 ~~~~~~~----~~~~~~v~~~~~s~~~~~~~l~~~----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg 344 (346)
...+..- ....+.+.-++++++++ .+.+. ...+.|.++|..+++.+..+.....+..++++|||
T Consensus 233 ~~~~~~~~~~~~wrP~g~q~ia~~~dg~--~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dg 310 (352)
T TIGR02658 233 IEAFTEAEKADGWRPGGWQQVAYHRARD--RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDA 310 (352)
T ss_pred eeeccccccccccCCCcceeEEEcCCCC--EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCC
Confidence 0000000 11233445599999995 34432 12257999999999988888888889999999999
Q ss_pred C
Q 019117 345 V 345 (346)
Q Consensus 345 ~ 345 (346)
+
T Consensus 311 k 311 (352)
T TIGR02658 311 K 311 (352)
T ss_pred C
Confidence 8
No 264
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.35 E-value=3.7e-11 Score=94.84 Aligned_cols=150 Identities=15% Similarity=0.255 Sum_probs=105.5
Q ss_pred CccEEEEEcCCc-EEEEEeccCce-eeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe---ecCCeEEEEEccCcceee
Q 019117 48 YFNVFATVGGNR-VTVYQCLEGGV-IAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG---GINGIIRVIDVSNEKLHK 122 (346)
Q Consensus 48 ~~~~la~~~~~~-v~i~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~ 122 (346)
.+++||.+..+. ..++++..... .+.+..+... ..-..+.+. .+.. ....+ +....+.+|....+. ..
T Consensus 73 ~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~---~~~~ai~~~--~~~~-sv~v~dkagD~~~~di~s~~~~~-~~ 145 (390)
T KOG3914|consen 73 SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP---KRPTAISFI--REDT-SVLVADKAGDVYSFDILSADSGR-CE 145 (390)
T ss_pred CceEEEEEeCCCceEEEEEecCCCcceeeeEeecc---cCcceeeee--eccc-eEEEEeecCCceeeeeecccccC-cc
Confidence 788999888777 66777765544 3334333222 222233333 3333 33333 334455566555433 34
Q ss_pred eeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEE
Q 019117 123 SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW 202 (346)
Q Consensus 123 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iw 202 (346)
.+-+|-..+++|+|+| ++++++++..|..|++-....--.+..+-. ||...|..++.-+ ++.|++++.|+++++|
T Consensus 146 ~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~Iesfcl--GH~eFVS~isl~~--~~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCL--GHKEFVSTISLTD--NYLLLSGSGDKTLRLW 220 (390)
T ss_pred hhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhcc--ccHhheeeeeecc--CceeeecCCCCcEEEE
Confidence 5567999999999999 889999999999999988876666665543 7999999999984 5669999999999999
Q ss_pred Eccccce
Q 019117 203 SMKEFWT 209 (346)
Q Consensus 203 d~~~~~~ 209 (346)
|+++++.
T Consensus 221 d~~sgk~ 227 (390)
T KOG3914|consen 221 DITSGKL 227 (390)
T ss_pred ecccCCc
Confidence 9999654
No 265
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=2.2e-10 Score=97.99 Aligned_cols=264 Identities=14% Similarity=0.155 Sum_probs=180.9
Q ss_pred ceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcC--------C-CCcEEEEee
Q 019117 35 PLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV--------D-GIPFLVAGG 105 (346)
Q Consensus 35 ~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~-~~~~l~~~~ 105 (346)
.-.++.|+| +.++|.|+..-|.+.|..+-+.+..+.. |...|..+.|++-| . ..-+||++.
T Consensus 17 N~~A~Dw~~-----~GLiAygshslV~VVDs~s~q~iqsie~-----h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD 86 (1062)
T KOG1912|consen 17 NRNAADWSP-----SGLIAYGSHSLVSVVDSRSLQLIQSIEL-----HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD 86 (1062)
T ss_pred cccccccCc-----cceEEEecCceEEEEehhhhhhhhcccc-----CccceeEEEeccCCCchhccCccccceeEEecc
Confidence 356788887 6799999988899999888887777764 67889999998432 1 223678888
Q ss_pred cCCeEEEEEccCcceeeeeccCCCceEEEEEeCC--CC-ceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEe
Q 019117 106 INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL--KP-SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 182 (346)
Q Consensus 106 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 182 (346)
..|.|.+||...+..+..+..|.+++.++.|-+. +. ..|++-....++.+|+..+|+...+.. .......|+.+
T Consensus 87 ~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~---ys~~iLs~f~~ 163 (1062)
T KOG1912|consen 87 ISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD---YSHEILSCFRV 163 (1062)
T ss_pred ccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc---cCCcceeeeee
Confidence 8999999999999989999999999999999873 22 467777777899999999999998887 45566778999
Q ss_pred cCCCCcEEEEEecCCeEEEEEccccceee--eeceeecCCCCCCCCccceeceEEEeecccc------e-EE--EEec--
Q 019117 183 HPSDIYRIASCGMDNTVKIWSMKEFWTYV--EKSFTWTDLPSKFPTKYVQFPVFIASVHSNY------V-DC--NRWL-- 249 (346)
Q Consensus 183 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------i-~~--~~~~-- 249 (346)
.|.+.+.+..-+..|.+.+-+.-...+.. .+.+......+.... .......-..++.. + .| ++|+
T Consensus 164 DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~--lere~at~ns~ts~~~sa~fity~a~faf~p~ 241 (1062)
T KOG1912|consen 164 DPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAH--LERETATGNSTTSTPASAYFITYCAQFAFSPH 241 (1062)
T ss_pred CCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhh--hhhhhhccccccCCCcchhHHHHHHhhhcChh
Confidence 99888888877888888887765422110 011111100000000 00000000000000 0 11 2233
Q ss_pred CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117 250 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (346)
Q Consensus 250 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~ 322 (346)
-+.++-......+.++|++-.. ++.......+.+.-+.+-|+++...|.+.-.||.+.+|--+.
T Consensus 242 ~rn~lfi~~prellv~dle~~~---------~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 242 WRNILFITFPRELLVFDLEYEC---------CLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hhceEEEEeccceEEEcchhhc---------eeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 1223333455679999998665 566666667777888999999878999999999999997665
No 266
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.32 E-value=1.7e-08 Score=94.82 Aligned_cols=273 Identities=14% Similarity=0.154 Sum_probs=153.1
Q ss_pred EEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecC---------CCccceEEEEEEEcCCCCcEEEEe-e
Q 019117 37 YAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDE---------DKEESFYTVSWACNVDGIPFLVAG-G 105 (346)
Q Consensus 37 ~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~l~~~-~ 105 (346)
..+++++. ++.++++-..++ |+++|.. +..+..+...... ..-.....+++. +++. .|+++ .
T Consensus 571 ~gvavd~~---~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd--~~gn-~LYVaDt 643 (1057)
T PLN02919 571 GKLAIDLL---NNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYN--AKKN-LLYVADT 643 (1057)
T ss_pred ceEEEECC---CCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEe--CCCC-EEEEEeC
Confidence 35777762 356666665555 9999964 4443333221000 001123445554 7766 55554 4
Q ss_pred cCCeEEEEEccCcceeeeeccC-----------------CCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEec
Q 019117 106 INGIIRVIDVSNEKLHKSFVGH-----------------GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA 168 (346)
Q Consensus 106 ~dg~i~iwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 168 (346)
.++.|+++|+.++. +.++.+- -.....++++|.++.++++.+.++.|++||..++... .+.
T Consensus 644 ~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~ 721 (1057)
T PLN02919 644 ENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFS 721 (1057)
T ss_pred CCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEe
Confidence 56789999987754 3333210 1134689999966677778788899999999876543 221
Q ss_pred cc------CC------CCcceEEEEecCCCCc-EEEEEecCCeEEEEEccccceeeeecee--ecCCCCCCCCccceece
Q 019117 169 GA------GG------HRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFT--WTDLPSKFPTKYVQFPV 233 (346)
Q Consensus 169 ~~------~~------~~~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 233 (346)
.. .+ .-.....++++| ++. ++++-+.++.|++||+.+.......... .......+.... ....
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d-G~g~ 799 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD-GVGS 799 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC-Cchh
Confidence 00 00 113456799999 555 6666677899999999864321100000 000000000000 0000
Q ss_pred EEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCcccccc----ccccCCCcCeeEEEEeecCCcceEE
Q 019117 234 FIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADIL----QKYPVPECDIWFIKFSCDFHYNAAA 307 (346)
Q Consensus 234 ~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~s~~~~~~~l~ 307 (346)
.....| -..++++ |+++++-..+++|++||..++......+....- ......-.....++++++| ++++
T Consensus 800 ~~~l~~---P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG--~lyV 874 (1057)
T PLN02919 800 EVLLQH---PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG--RLFV 874 (1057)
T ss_pred hhhccC---CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCC--CEEE
Confidence 001112 2355665 778888888999999999876521111100000 0011122356789999999 6888
Q ss_pred EEcCCCcEEEEEcCCCCc
Q 019117 308 IGNREGKIFVWELQSSPP 325 (346)
Q Consensus 308 ~~~~dg~i~iwd~~~~~~ 325 (346)
+-+.++.|++||+.+++.
T Consensus 875 aDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 875 ADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EECCCCEEEEEECCCCcc
Confidence 889999999999998764
No 267
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=1.2e-09 Score=94.03 Aligned_cols=159 Identities=17% Similarity=0.121 Sum_probs=98.9
Q ss_pred ecccCCCceEEEEEEeecCCCccEEEEEcCC----cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE-
Q 019117 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGN----RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV- 102 (346)
Q Consensus 28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~----~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~- 102 (346)
.+..+...+...+|+| +|+.|+..+.+ .|.+|++.++.... +..+ .+......| +|+|+ .|+
T Consensus 193 ~l~~~~~~~~~p~wSp----DG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~-----~g~~~~~~~--SpDG~-~la~ 259 (430)
T PRK00178 193 TLLQSREPILSPRWSP----DGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNF-----EGLNGAPAW--SPDGS-KLAF 259 (430)
T ss_pred EEecCCCceeeeeECC----CCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCC-----CCCcCCeEE--CCCCC-EEEE
Confidence 3445677889999999 77887765533 28899987775433 2211 112223444 59998 555
Q ss_pred EeecCC--eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEee-CCC--CEEEEecCCCeeEEEecccCCCCcce
Q 019117 103 AGGING--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDE--SVRLWNVQTGICILIFAGAGGHRNEV 177 (346)
Q Consensus 103 ~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v 177 (346)
+...+| .|.+||+.+++... +..+........|+| +++.++..+ .++ .|.++|+.+++...... .....
T Consensus 260 ~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~----~~~~~ 333 (430)
T PRK00178 260 VLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF----VGNYN 333 (430)
T ss_pred EEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeec----CCCCc
Confidence 555555 68888988876543 444555667789999 666655444 343 57777887776433222 12233
Q ss_pred EEEEecCCCCcEEEEEec-CC--eEEEEEccc
Q 019117 178 LSVDFHPSDIYRIASCGM-DN--TVKIWSMKE 206 (346)
Q Consensus 178 ~~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~ 206 (346)
....|+| +++.++..+. ++ .|.+||+.+
T Consensus 334 ~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~t 364 (430)
T PRK00178 334 ARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQR 364 (430)
T ss_pred cceEECC-CCCEEEEEEccCCceEEEEEECCC
Confidence 4578999 6666665543 33 477888876
No 268
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.30 E-value=2.9e-10 Score=88.11 Aligned_cols=165 Identities=18% Similarity=0.418 Sum_probs=117.0
Q ss_pred ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEecc-CceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLE-GGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (346)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (346)
.....+....|..+|..+-|+- ..+.+++++.|.-..|-..+ +..+....- ... -.++.+. -. +
T Consensus 103 km~~~r~~~~h~~~v~~~if~~----~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~-----~t~~~~d----~~-~ 167 (404)
T KOG1409|consen 103 KMTFLKDYLAHQARVSAIVFSL----THEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETP-----ASALQFD----AL-Y 167 (404)
T ss_pred hcchhhhhhhhhcceeeEEecC----CceeEEEeccccceEEEeeccCCcccceEe-ecc-----CCCCcee----eE-E
Confidence 3445556678999999999987 45889999988866666543 322222111 000 0001111 11 4
Q ss_pred EEEeecCCeEEEEEc--cCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee-EEEecccCCCCcce
Q 019117 101 LVAGGINGIIRVIDV--SNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC-ILIFAGAGGHRNEV 177 (346)
Q Consensus 101 l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~v 177 (346)
...|...|.|.+-.+ +....+.++.+|.+.+.+++|.| ....|.+|..|..+.+||+--.+- ...+. +|...|
T Consensus 168 ~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~---gh~~kV 243 (404)
T KOG1409|consen 168 AFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQ---GHNDKV 243 (404)
T ss_pred EEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeec---cchhhh
Confidence 455656666666554 44567888999999999999999 889999999999999999964332 22333 699999
Q ss_pred EEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117 178 LSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (346)
Q Consensus 178 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 206 (346)
..+...+ -...+++++.||.|.+|++..
T Consensus 244 ~~l~~~~-~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 244 QALSYAQ-HTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhhh-hheeeeeccCCCeEEEEeccc
Confidence 9998886 778899999999999999986
No 269
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.29 E-value=2.3e-11 Score=112.49 Aligned_cols=185 Identities=13% Similarity=0.249 Sum_probs=143.0
Q ss_pred EEEcCCCCcEEEEeecCCeEEEEEccCcceeeeecc-CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecc
Q 019117 91 WACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG-HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG 169 (346)
Q Consensus 91 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 169 (346)
+.-+|... +.++|+.||.+++|....++.+..++. ....|+.+.|+. .++.+..+..||.+.+|... .++....+
T Consensus 2214 ~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~-pk~~~s~q- 2289 (2439)
T KOG1064|consen 2214 MTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQAS-PKPYTSWQ- 2289 (2439)
T ss_pred ecCCCCCc-eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccC-Ccceeccc-
Confidence 33445555 889999999999999998887766642 347899999999 88899999999999999987 55555555
Q ss_pred cCCCCcceEEEEecCCCCcEEEEEe---cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEE
Q 019117 170 AGGHRNEVLSVDFHPSDIYRIASCG---MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN 246 (346)
Q Consensus 170 ~~~~~~~v~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 246 (346)
.|......+.|-. ..+++++ .++.+.+||.-... .....-..|...++++
T Consensus 2290 --chnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~----------------------~~s~v~~~H~~gaT~l 2342 (2439)
T KOG1064|consen 2290 --CHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPP----------------------MNSLVHTCHDGGATVL 2342 (2439)
T ss_pred --cCCccccceeeee---hhhhccccCCCCCcccchhcccCc----------------------ccceeeeecCCCceEE
Confidence 6888888898873 5666664 46789999976521 1111227899999999
Q ss_pred Eec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 247 RWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 247 ~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
++. .++|++||.+|.|++||++..+ ..+.++. +. .. .++++|+..|.|+||++..-.
T Consensus 2343 ~~~P~~qllisggr~G~v~l~D~rqrq---------l~h~~~~---------~~-~~--~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2343 AYAPKHQLLISGGRKGEVCLFDIRQRQ---------LRHTFQA---------LD-TR--EYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred EEcCcceEEEecCCcCcEEEeehHHHH---------HHHHhhh---------hh-hh--heeeccCcccceEEEEccccc
Confidence 998 5689999999999999999765 4555543 22 22 689999999999999998765
Q ss_pred cce
Q 019117 325 PVL 327 (346)
Q Consensus 325 ~~~ 327 (346)
.+.
T Consensus 2402 ll~ 2404 (2439)
T KOG1064|consen 2402 LLH 2404 (2439)
T ss_pred hhh
Confidence 443
No 270
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.29 E-value=1.5e-09 Score=88.55 Aligned_cols=263 Identities=11% Similarity=0.077 Sum_probs=161.7
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC-
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING- 108 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg- 108 (346)
..-.-++..+.||| .|.+|++....+|.+|.-.....+..+. ...|..+.|+ |+++ ||.+-+..+
T Consensus 29 ~~~~~p~~~~~~SP----~G~~l~~~~~~~V~~~~g~~~~~l~~~~-------~~~V~~~~fS--P~~k-YL~tw~~~pi 94 (561)
T COG5354 29 ESENWPVAYVSESP----LGTYLFSEHAAGVECWGGPSKAKLVRFR-------HPDVKYLDFS--PNEK-YLVTWSREPI 94 (561)
T ss_pred cccCcchhheeecC----cchheehhhccceEEccccchhheeeee-------cCCceecccC--cccc-eeeeeccCCc
Confidence 33566788999999 8899999999999999965544333332 2345556555 9998 999865443
Q ss_pred --------------eEEEEEccCcceeeeeccCCCc--eE-EEEEeCCCCceEEEeeCCCCEEEEecCCCeeE-EEeccc
Q 019117 109 --------------IIRVIDVSNEKLHKSFVGHGDS--IN-EIRTQPLKPSLVVSASKDESVRLWNVQTGICI-LIFAGA 170 (346)
Q Consensus 109 --------------~i~iwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~ 170 (346)
.+.+||..++..+..+.....+ .. -+.|+. +..+++-.. ...+.|+++ ++... ..+..
T Consensus 95 ~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ARvv-~~sl~i~e~-t~n~~~~p~~~- 170 (561)
T COG5354 95 IEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI-DDKYVARVV-GSSLYIHEI-TDNIEEHPFKN- 170 (561)
T ss_pred cChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeee-cchhhhhhc-cCeEEEEec-CCccccCchhh-
Confidence 4999999999999988876655 44 677887 556555432 346999997 33322 12221
Q ss_pred CCCCcceEEEEecCC-CCcEEEE-----EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE
Q 019117 171 GGHRNEVLSVDFHPS-DIYRIAS-----CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD 244 (346)
Q Consensus 171 ~~~~~~v~~~~~~~~-~~~~l~s-----~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (346)
-....|....|+|. ++..|+. .+.++.+++|.+..... +.+...-...-.
T Consensus 171 -lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~-----------------------l~tk~lfk~~~~ 226 (561)
T COG5354 171 -LRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV-----------------------LVTKNLFKVSGV 226 (561)
T ss_pred -ccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe-----------------------eeeeeeEeeccc
Confidence 12356888889983 2333332 35677888888875222 111111111112
Q ss_pred EEEec--CCEEEEEe-----------ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcC
Q 019117 245 CNRWL--GDFILSKS-----------VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR 311 (346)
Q Consensus 245 ~~~~~--~~~l~~~~-----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~ 311 (346)
.+.|. |++|+.-- .+..+.|+++.... +.....-.++|...+|.|.+..--+++|-.
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~----------i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~ 296 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS----------IPVEKDLKDPVHDFTWEPLSSRFAVISGYM 296 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc----------cceeccccccceeeeecccCCceeEEeccc
Confidence 33443 55443321 13457778777432 111113467899999999996334455568
Q ss_pred CCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117 312 EGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 312 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~ 346 (346)
+-.+.++|+... +.....+..-+.+.|||.++|
T Consensus 297 pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~ 329 (561)
T COG5354 297 PASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERY 329 (561)
T ss_pred ccceeecccccc--eEEecCCcccccccccCcccE
Confidence 889999999876 222222333455667776664
No 271
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=3e-09 Score=87.81 Aligned_cols=263 Identities=12% Similarity=0.107 Sum_probs=161.2
Q ss_pred eEEEEEEeecCCCccEEEEEcC------------CcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE
Q 019117 36 LYAVVFNFIDSRYFNVFATVGG------------NRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (346)
Q Consensus 36 v~~~~~~p~~~~~~~~la~~~~------------~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 103 (346)
|.-+.||| ..++|+|-+. +.+.|||+.+|...+.+..+... -..-....|+ .|++ |+|-
T Consensus 252 Vq~idfSP----~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~--~~~WP~frWS--~DdK-y~Ar 322 (698)
T KOG2314|consen 252 VQFIDFSP----NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSP--YLKWPIFRWS--HDDK-YFAR 322 (698)
T ss_pred ceeeecCC----ccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCC--ccccceEEec--cCCc-eeEE
Confidence 77899999 7799999764 12999999999998888765221 1122224565 7888 8887
Q ss_pred eecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeC-----CCCEEEEecCCCeeEEEecccCCCCcceE
Q 019117 104 GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK-----DESVRLWNVQTGICILIFAGAGGHRNEVL 178 (346)
Q Consensus 104 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 178 (346)
-.. ..|.||+..+-.++..-.-.-..|....|+| .+++||-=.. -..+.+-.+.+++.+++-. -+.-.=.
T Consensus 323 m~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n---lfnVsDc 397 (698)
T KOG2314|consen 323 MTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN---LFNVSDC 397 (698)
T ss_pred ecc-ceEEEEecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeecc---ceeeecc
Confidence 765 5699999766444332222346788999999 7777764322 1346666666666665544 2322223
Q ss_pred EEEecCCCCcEEEEE----------ecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEe
Q 019117 179 SVDFHPSDIYRIASC----------GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW 248 (346)
Q Consensus 179 ~~~~~~~~~~~l~s~----------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 248 (346)
.|.|-. +|.+|+.- +.-..+.|+.++.. ..++.... -...|...+|
T Consensus 398 kLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireK----------------------dIpve~ve-lke~vi~FaW 453 (698)
T KOG2314|consen 398 KLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREK----------------------DIPVEVVE-LKESVIAFAW 453 (698)
T ss_pred EEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeecc----------------------CCCceeee-cchheeeeee
Confidence 455654 66666532 11224555655551 12222222 2455667777
Q ss_pred c--CCEEEEEee---cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEE---cCCCcEEEEEc
Q 019117 249 L--GDFILSKSV---DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG---NREGKIFVWEL 320 (346)
Q Consensus 249 ~--~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~---~~dg~i~iwd~ 320 (346)
. |+.+++-+. ..++.+|.+.+... ...++..+.. ...+.+-|+|.| ++++.+ |..|.+.++|+
T Consensus 454 EP~gdkF~vi~g~~~k~tvsfY~~e~~~~-----~~~lVk~~dk--~~~N~vfwsPkG--~fvvva~l~s~~g~l~F~D~ 524 (698)
T KOG2314|consen 454 EPHGDKFAVISGNTVKNTVSFYAVETNIK-----KPSLVKELDK--KFANTVFWSPKG--RFVVVAALVSRRGDLEFYDT 524 (698)
T ss_pred ccCCCeEEEEEccccccceeEEEeecCCC-----chhhhhhhcc--cccceEEEcCCC--cEEEEEEecccccceEEEec
Confidence 6 666655443 46789998885321 2234444443 456778999999 555554 45789999998
Q ss_pred CCCCcceeeeeeee--EEEEEecCCCCC
Q 019117 321 QSSPPVLIARLICF--SLHVKYNPQSVY 346 (346)
Q Consensus 321 ~~~~~~~~~~~~~~--~~~~~~spdg~~ 346 (346)
.-..... .....| .+.+.|.|.|||
T Consensus 525 ~~a~~k~-~~~~eh~~at~veWDPtGRY 551 (698)
T KOG2314|consen 525 DYADLKD-TASPEHFAATEVEWDPTGRY 551 (698)
T ss_pred chhhhhh-ccCccccccccceECCCCCE
Confidence 7533222 222222 467999999998
No 272
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.28 E-value=1.3e-10 Score=91.86 Aligned_cols=151 Identities=17% Similarity=0.170 Sum_probs=105.1
Q ss_pred EcCCCCcEEEEeecCCeEEEEEccCcce----eeeeccCCCceEEEEEeCCC--CceEEEeeCCCCEEEEecCCCeeEEE
Q 019117 93 CNVDGIPFLVAGGINGIIRVIDVSNEKL----HKSFVGHGDSINEIRTQPLK--PSLVVSASKDESVRLWNVQTGICILI 166 (346)
Q Consensus 93 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~ 166 (346)
.++.++ ++|.+..+....++++..... ..... -...-+.+.|...+ .......++...+.+|....+.+...
T Consensus 70 ~s~~~~-llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~ 147 (390)
T KOG3914|consen 70 TSDSGR-LVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPI 147 (390)
T ss_pred cCCCce-EEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchh
Confidence 346677 999988888877777754432 22222 12223344444412 22223345556677777665555555
Q ss_pred ecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE-eecccceEE
Q 019117 167 FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SVHSNYVDC 245 (346)
Q Consensus 167 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 245 (346)
+ +|-+.++.++|+| +++.++++..|..|++-.... ...+..+ .+|...|..
T Consensus 148 l----GhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa-----------------------~f~IesfclGH~eFVS~ 199 (390)
T KOG3914|consen 148 L----GHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPA-----------------------TFVIESFCLGHKEFVST 199 (390)
T ss_pred h----hhhhhhheeeecC-CCCEEEEecCCceEEEEecCc-----------------------ccchhhhccccHhheee
Confidence 5 6999999999999 889999999999999976665 2223333 359999999
Q ss_pred EEec-CCEEEEEeecCeEEEEcCCCCCCC
Q 019117 246 NRWL-GDFILSKSVDNEIVLWEPKMKEQS 273 (346)
Q Consensus 246 ~~~~-~~~l~~~~~d~~i~iwd~~~~~~~ 273 (346)
++.- +..|+++|.|+++++||+.+++..
T Consensus 200 isl~~~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 200 ISLTDNYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred eeeccCceeeecCCCCcEEEEecccCCcc
Confidence 9988 677899999999999999999854
No 273
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=1.7e-09 Score=92.87 Aligned_cols=158 Identities=14% Similarity=0.117 Sum_probs=93.5
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCC----cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGN----RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~----~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 105 (346)
..+...+.+..|+| +|+.|+..+.+ .|.+||+.+++... +..+ ........| +|||+.++++.+
T Consensus 214 ~~~~~~~~~p~wSP----DG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~-----~g~~~~~~w--SPDG~~La~~~~ 281 (448)
T PRK04792 214 LRSPEPLMSPAWSP----DGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSF-----PGINGAPRF--SPDGKKLALVLS 281 (448)
T ss_pred ecCCCcccCceECC----CCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCC-----CCCcCCeeE--CCCCCEEEEEEe
Confidence 34456778899999 78877765432 28888987765422 2211 111223444 599993444556
Q ss_pred cCCe--EEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEee-CCC--CEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117 106 INGI--IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDE--SVRLWNVQTGICILIFAGAGGHRNEVLSV 180 (346)
Q Consensus 106 ~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 180 (346)
.+|. |.++|+.+++.. .+..+........|+| +++.++..+ .++ .|.++|+.+++...... ........
T Consensus 282 ~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~----~g~~~~~~ 355 (448)
T PRK04792 282 KDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTF----EGEQNLGG 355 (448)
T ss_pred CCCCeEEEEEECCCCCeE-ECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEec----CCCCCcCe
Confidence 6664 777788777643 3444555667889999 666665444 344 46666777666433221 22223456
Q ss_pred EecCCCCcEEEEEec-CCe--EEEEEccc
Q 019117 181 DFHPSDIYRIASCGM-DNT--VKIWSMKE 206 (346)
Q Consensus 181 ~~~~~~~~~l~s~~~-d~~--i~iwd~~~ 206 (346)
+|+| ++++++..+. ++. |.++|+.+
T Consensus 356 ~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~ 383 (448)
T PRK04792 356 SITP-DGRSMIMVNRTNGKFNIARQDLET 383 (448)
T ss_pred eECC-CCCEEEEEEecCCceEEEEEECCC
Confidence 8999 6666655443 444 44456655
No 274
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=8.1e-09 Score=88.02 Aligned_cols=201 Identities=11% Similarity=0.103 Sum_probs=111.2
Q ss_pred cccCCCceEEEEEEeecCCCccE--E-EEEcCCc---EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117 29 LQEGKRPLYAVVFNFIDSRYFNV--F-ATVGGNR---VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (346)
Q Consensus 29 ~~~h~~~v~~~~~~p~~~~~~~~--l-a~~~~~~---v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 102 (346)
|......+..-+|+| ||+. + .+...++ |.+.++..++...... + .......+| +|||+ .|+
T Consensus 180 lt~~~~~~~sP~wSP----DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~-----~g~~~~p~w--SPDG~-~La 246 (428)
T PRK01029 180 LTQEHSLSITPTWMH----IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-L-----QGNQLMPTF--SPRKK-LLA 246 (428)
T ss_pred cccCCCCcccceEcc----CCCceEEEEEEccCCCceEEEEECCCCCceEeec-C-----CCCccceEE--CCCCC-EEE
Confidence 333445566779999 5553 2 2333332 8888887765433322 2 112222444 59998 555
Q ss_pred Eee-cCC----eEEEEEccCc---ceeeeeccCCCceEEEEEeCCCCceEEEee-CCCCEEEEe--cCC-CeeEEEeccc
Q 019117 103 AGG-ING----IIRVIDVSNE---KLHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDESVRLWN--VQT-GICILIFAGA 170 (346)
Q Consensus 103 ~~~-~dg----~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd--~~~-~~~~~~~~~~ 170 (346)
..+ .+| .+.+|++..+ +..+....+.......+|+| +++.|+..+ .+|...+|. +.. +.....+.
T Consensus 247 f~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt-- 323 (428)
T PRK01029 247 FISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT-- 323 (428)
T ss_pred EEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECcccccceEEec--
Confidence 443 223 3444676653 33333333333456789999 777666544 567555554 432 22333443
Q ss_pred CCCCcceEEEEecCCCCcEEEEEec-C--CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEE
Q 019117 171 GGHRNEVLSVDFHPSDIYRIASCGM-D--NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR 247 (346)
Q Consensus 171 ~~~~~~v~~~~~~~~~~~~l~s~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 247 (346)
.+...+....|+| +++.|+..+. + ..|.+||+...+. ..+......+....
T Consensus 324 -~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~g~~------------------------~~Lt~~~~~~~~p~ 377 (428)
T PRK01029 324 -KKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLATGRD------------------------YQLTTSPENKESPS 377 (428)
T ss_pred -cCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCCCCe------------------------EEccCCCCCccceE
Confidence 2445667889999 7776665543 2 3688999877321 11221222345566
Q ss_pred ec--CCEEEEEee---cCeEEEEcCCCCC
Q 019117 248 WL--GDFILSKSV---DNEIVLWEPKMKE 271 (346)
Q Consensus 248 ~~--~~~l~~~~~---d~~i~iwd~~~~~ 271 (346)
|+ |+.|+.... ...|.++|+.+++
T Consensus 378 wSpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 378 WAIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 76 666654332 3568888887765
No 275
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=6e-09 Score=86.07 Aligned_cols=257 Identities=11% Similarity=0.142 Sum_probs=152.8
Q ss_pred EEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec----------
Q 019117 37 YAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI---------- 106 (346)
Q Consensus 37 ~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~---------- 106 (346)
+-+.||| .|.+|+|--..||.+|- |.....++.|. |. .|.-+.|+ |..+ ||++-+.
T Consensus 214 tyv~wSP----~GTYL~t~Hk~GI~lWG---G~~f~r~~RF~---Hp-~Vq~idfS--P~Ek-YLVT~s~~p~~~~~~d~ 279 (698)
T KOG2314|consen 214 TYVRWSP----KGTYLVTFHKQGIALWG---GESFDRIQRFY---HP-GVQFIDFS--PNEK-YLVTYSPEPIIVEEDDN 279 (698)
T ss_pred eeEEecC----CceEEEEEeccceeeec---CccHHHHHhcc---CC-CceeeecC--Cccc-eEEEecCCccccCcccC
Confidence 4689999 78999999999999998 44444444442 22 24445555 8888 9998653
Q ss_pred -CCeEEEEEccCcceeeeeccCCC---ceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEe
Q 019117 107 -NGIIRVIDVSNEKLHKSFVGHGD---SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 182 (346)
Q Consensus 107 -dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 182 (346)
...++|||+.+|...+.+....+ .-.-+.||. ++.++|--.. ..|.|++..+..++..-. -.-..|....|
T Consensus 280 e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~lld~Ks---lki~gIr~Fsw 354 (698)
T KOG2314|consen 280 EGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFMLLDKKS---LKISGIRDFSW 354 (698)
T ss_pred CCceEEEEEccccchhcceeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCceeeecccc---cCCccccCccc
Confidence 25799999999998888765222 223578888 7888887665 569999977643332221 24567899999
Q ss_pred cCCCCcEEEEEec-----CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEE
Q 019117 183 HPSDIYRIASCGM-----DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS 255 (346)
Q Consensus 183 ~~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~ 255 (346)
+| .+.+|+-=.. -..+.+-.+.+. ..+++...+.-.=..+.|. |++|+.
T Consensus 355 sP-~~~llAYwtpe~~~~parvtL~evPs~-----------------------~~iRt~nlfnVsDckLhWQk~gdyLcv 410 (698)
T KOG2314|consen 355 SP-TSNLLAYWTPETNNIPARVTLMEVPSK-----------------------REIRTKNLFNVSDCKLHWQKSGDYLCV 410 (698)
T ss_pred CC-CcceEEEEcccccCCcceEEEEecCcc-----------------------ceeeeccceeeeccEEEeccCCcEEEE
Confidence 99 6555543211 112222222221 1122222222111223332 566554
Q ss_pred E----------eecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcC--CCcEEEEEcCC-
Q 019117 256 K----------SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR--EGKIFVWELQS- 322 (346)
Q Consensus 256 ~----------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~--dg~i~iwd~~~- 322 (346)
- +.-..+.|+.++.... ++..... ...|...+|-|.|. ++.+..+. -.++.+|.+++
T Consensus 411 kvdR~tK~~~~g~f~n~eIfrireKdI--------pve~vel-ke~vi~FaWEP~gd-kF~vi~g~~~k~tvsfY~~e~~ 480 (698)
T KOG2314|consen 411 KVDRHTKSKVKGQFSNLEIFRIREKDI--------PVEVVEL-KESVIAFAWEPHGD-KFAVISGNTVKNTVSFYAVETN 480 (698)
T ss_pred EEEeeccccccceEeeEEEEEeeccCC--------Cceeeec-chheeeeeeccCCC-eEEEEEccccccceeEEEeecC
Confidence 3 2223466676665542 2222222 34788889999995 33333332 34788998884
Q ss_pred -CCcceeeeee-eeEEEEEecCCCCC
Q 019117 323 -SPPVLIARLI-CFSLHVKYNPQSVY 346 (346)
Q Consensus 323 -~~~~~~~~~~-~~~~~~~~spdg~~ 346 (346)
.++..+..+. .+.+.+.|+|.|++
T Consensus 481 ~~~~~lVk~~dk~~~N~vfwsPkG~f 506 (698)
T KOG2314|consen 481 IKKPSLVKELDKKFANTVFWSPKGRF 506 (698)
T ss_pred CCchhhhhhhcccccceEEEcCCCcE
Confidence 2233333333 34688999999985
No 276
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=4.7e-11 Score=92.49 Aligned_cols=154 Identities=14% Similarity=0.227 Sum_probs=118.9
Q ss_pred EEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC-----ee
Q 019117 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-----IC 163 (346)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-----~~ 163 (346)
++|+.+--|- . ++.+.+-.+-+-++.++-. +.+. ..+.|.++.|.. .++++..|...|.|...|++.+ .+
T Consensus 217 CawSlni~gy-h-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~ 291 (425)
T KOG2695|consen 217 CAWSLNIMGY-H-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWC 291 (425)
T ss_pred hhhhhcccee-e-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcc
Confidence 4666555554 3 5555677788889887653 3333 567899999998 7899999999999999999854 45
Q ss_pred EEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce
Q 019117 164 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV 243 (346)
Q Consensus 164 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 243 (346)
...+- |.+.|+++..-..++.+|++.+.+|+|++||++..+. +..+.++.+|.+.-
T Consensus 292 a~rly----h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~--------------------~~~V~qYeGHvN~~ 347 (425)
T KOG2695|consen 292 AQRLY----HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC--------------------KKSVMQYEGHVNLS 347 (425)
T ss_pred eEEEE----cCcchhhhhhhccccceEeeccCcCceeEeeehhhhc--------------------ccceeeeecccccc
Confidence 56665 9999999987754678899999999999999998332 23477788887765
Q ss_pred EEEEec----CCEEEEEeecCeEEEEcCCCCC
Q 019117 244 DCNRWL----GDFILSKSVDNEIVLWEPKMKE 271 (346)
Q Consensus 244 ~~~~~~----~~~l~~~~~d~~i~iwd~~~~~ 271 (346)
.-+-+. ...+++++.|...|||.++.+.
T Consensus 348 a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 348 AYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred cccccccccccceEEEccCeeEEEEEecccCc
Confidence 555554 5688889999999999999887
No 277
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.20 E-value=6.3e-09 Score=84.43 Aligned_cols=208 Identities=13% Similarity=0.080 Sum_probs=144.6
Q ss_pred CCCCcEEEEeecCCeEEEEEccCcceeeeecc------C--C---CceEEEE-EeCCCCceEEEeeCCCCEEEEecCCCe
Q 019117 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG------H--G---DSINEIR-TQPLKPSLVVSASKDESVRLWNVQTGI 162 (346)
Q Consensus 95 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~--~---~~v~~~~-~~~~~~~~l~s~~~d~~i~iwd~~~~~ 162 (346)
.||+ .++- +..|.|.+||..+.+..+.--+ . . .+..-+. |++.++.+++..|. |...+.+...+-
T Consensus 276 sDGk-rIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~ 352 (668)
T COG4946 276 SDGK-RIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY 352 (668)
T ss_pred CCCc-EEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCe
Confidence 5777 3332 3458899999877653221100 0 0 0111111 44556888888886 778888876555
Q ss_pred eEEEecccCCCCcceEEEEecCCCCcEEEEEecCC-eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc
Q 019117 163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241 (346)
Q Consensus 163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (346)
.++. ++.+.|+-..+.- +++-++.|..|| .+-++|.+..+ +..+...-+
T Consensus 353 ~iqv-----~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e------------------------~kr~e~~lg 402 (668)
T COG4946 353 SIQV-----GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGE------------------------VKRIEKDLG 402 (668)
T ss_pred eEEc-----CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCce------------------------EEEeeCCcc
Confidence 4433 4777898888876 666888999999 89999999832 334445556
Q ss_pred ceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCC----cE
Q 019117 242 YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG----KI 315 (346)
Q Consensus 242 ~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg----~i 315 (346)
.|.++..+ |++++.+.....+-+.|+.+++. ...-+...+-|+.++|+|++ +++|-+--+| .|
T Consensus 403 ~I~av~vs~dGK~~vvaNdr~el~vididngnv---------~~idkS~~~lItdf~~~~ns--r~iAYafP~gy~tq~I 471 (668)
T COG4946 403 NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV---------RLIDKSEYGLITDFDWHPNS--RWIAYAFPEGYYTQSI 471 (668)
T ss_pred ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe---------eEecccccceeEEEEEcCCc--eeEEEecCcceeeeeE
Confidence 67777777 78899999999999999999862 11222345679999999999 7899877655 79
Q ss_pred EEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117 316 FVWELQSSPPVLIARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 316 ~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~ 346 (346)
+++|+.+++........++-.+-+|.|||+|
T Consensus 472 klydm~~~Kiy~vTT~ta~DfsPaFD~d~ry 502 (668)
T COG4946 472 KLYDMDGGKIYDVTTPTAYDFSPAFDPDGRY 502 (668)
T ss_pred EEEecCCCeEEEecCCcccccCcccCCCCcE
Confidence 9999999876555554555566788999986
No 278
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.19 E-value=7.5e-07 Score=70.27 Aligned_cols=281 Identities=16% Similarity=0.154 Sum_probs=165.4
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCC----cEEEEEeccC-ceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGN----RVTVYQCLEG-GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~----~v~i~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 104 (346)
-.+.+.++-|+|+| +++.|.++..+ +|..|.+... ..+..+...... +.....++ .+++|+ +++++
T Consensus 36 v~~~~nptyl~~~~----~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~--g~~p~yvs--vd~~g~-~vf~A 106 (346)
T COG2706 36 VAELGNPTYLAVNP----DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLP--GSPPCYVS--VDEDGR-FVFVA 106 (346)
T ss_pred ccccCCCceEEECC----CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccC--CCCCeEEE--ECCCCC-EEEEE
Confidence 34566788899999 66777777655 2888887753 344444433221 22223344 459998 77776
Q ss_pred e-cCCeEEEEEccC-cceee--eeccCCCc----------eEEEEEeCCCCceEEEeeC-CCCEEEEecCCCeeEEEecc
Q 019117 105 G-INGIIRVIDVSN-EKLHK--SFVGHGDS----------INEIRTQPLKPSLVVSASK-DESVRLWNVQTGICILIFAG 169 (346)
Q Consensus 105 ~-~dg~i~iwd~~~-~~~~~--~~~~~~~~----------v~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~ 169 (346)
. ..|.|.++-++. |.+.. .+..|.+. +....+.| ++++|++..- --.|.+|++..++....-..
T Consensus 107 nY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~ 185 (346)
T COG2706 107 NYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPA 185 (346)
T ss_pred EccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCcccccccc
Confidence 5 468999999865 43221 12235555 88999999 8888887643 23589999997765433221
Q ss_pred cCCCCcceEEEEecCCCCcEEEEEe-cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEe
Q 019117 170 AGGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW 248 (346)
Q Consensus 170 ~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 248 (346)
.-......+.|.|+| ++++..... .+++|.+|...........--.....+..+ .-..+...|..
T Consensus 186 ~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF-------------~g~~~~aaIhi 251 (346)
T COG2706 186 EVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDF-------------TGTNWAAAIHI 251 (346)
T ss_pred ccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcccc-------------CCCCceeEEEE
Confidence 113566789999999 777665554 589999999988321111110000111110 11223444555
Q ss_pred c--CCEEEEEee-cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcC-CCcEEEEEcCC--
Q 019117 249 L--GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR-EGKIFVWELQS-- 322 (346)
Q Consensus 249 ~--~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~-dg~i~iwd~~~-- 322 (346)
+ |++|.++.. ...|.+|.+..... ....+.....+........|++++ ++|+++.+ ...|.+|....
T Consensus 252 s~dGrFLYasNRg~dsI~~f~V~~~~g-----~L~~~~~~~teg~~PR~F~i~~~g--~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 252 SPDGRFLYASNRGHDSIAVFSVDPDGG-----KLELVGITPTEGQFPRDFNINPSG--RFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred CCCCCEEEEecCCCCeEEEEEEcCCCC-----EEEEEEEeccCCcCCccceeCCCC--CEEEEEccCCCcEEEEEEcCCC
Confidence 4 788877754 34788887765421 122333333344446788899999 66766664 44688887655
Q ss_pred CCcceeee--eeeeEEEEEec
Q 019117 323 SPPVLIAR--LICFSLHVKYN 341 (346)
Q Consensus 323 ~~~~~~~~--~~~~~~~~~~s 341 (346)
|++..... ....+.|+.|.
T Consensus 325 G~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 325 GRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred ceEEecccccCCCCcEEEEEc
Confidence 43322222 22335677764
No 279
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=1.5e-10 Score=95.45 Aligned_cols=174 Identities=10% Similarity=0.113 Sum_probs=124.6
Q ss_pred eeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc-eee-eEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117 25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG-VIA-ALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (346)
Q Consensus 25 ~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~-~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (346)
.++.+.||+..|..++--. +.+-|++++.|+ |++|.++... .+. ..-.+....|..+|..+.|. .+.+ ++
T Consensus 727 rL~nf~GH~~~iRai~Aid----NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL--~~lr-~i 799 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAID----NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFL--ADLR-SI 799 (1034)
T ss_pred eeecccCcHHHhHHHHhcc----cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeee--eccc-ee
Confidence 3456799999999887554 567899999998 9999987432 221 22335556688999999887 5555 66
Q ss_pred EEeecCCeEEEEEccCcceeeeecc--CCCceEEEEEeCC-CCceEEEe-eCCCCEEEEecCCCeeEEEeccc--CCCCc
Q 019117 102 VAGGINGIIRVIDVSNEKLHKSFVG--HGDSINEIRTQPL-KPSLVVSA-SKDESVRLWNVQTGICILIFAGA--GGHRN 175 (346)
Q Consensus 102 ~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~-~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~--~~~~~ 175 (346)
+++ ||.|++||.--++.+..+.. ..+.+..+..-++ +..++..| +...+|+++|.+..+....++.. .+...
T Consensus 800 ~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna 877 (1034)
T KOG4190|consen 800 ASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNA 877 (1034)
T ss_pred eec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCch
Confidence 655 78999999988876653321 2233444444442 33444444 78899999999988777666543 24556
Q ss_pred ceEEEEecCCCCcEEEEEecCCeEEEEEccccc
Q 019117 176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208 (346)
Q Consensus 176 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 208 (346)
-+++++..+ .|++++.+-..|.|.+.|.+++.
T Consensus 878 ~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 878 LTRAIAVAD-KGNKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred heeEEEecc-CcchhhHHhcCCcEEEEecCCCc
Confidence 789999998 89999999999999999999843
No 280
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.17 E-value=1.1e-08 Score=76.94 Aligned_cols=253 Identities=12% Similarity=0.049 Sum_probs=151.3
Q ss_pred EEEEEeecC-CCccEEEEEcCCc-EEEEEeccCcee-eeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEE
Q 019117 38 AVVFNFIDS-RYFNVFATVGGNR-VTVYQCLEGGVI-AALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVID 114 (346)
Q Consensus 38 ~~~~~p~~~-~~~~~la~~~~~~-v~i~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd 114 (346)
.+.|-|..- ....+||.|+..+ ..+|.+.+.+.. ..... +...|.-+.-.+ +.+.-+..++.|.++++.+
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~-----snn~v~~~~r~c--d~~~~~~i~sndht~k~~~ 144 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDV-----SNNDVTLVKRYC--DLKFPLNIASNDHTGKTMV 144 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecc-----cccchhhhhhhc--ccccceeeccCCcceeEEE
Confidence 466666110 0124677776666 999998865432 22222 222222221111 1122467788899999988
Q ss_pred ccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC-eeEEEecccCCCCcceEEEEecCCCCcEEEEE
Q 019117 115 VSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-ICILIFAGAGGHRNEVLSVDFHPSDIYRIASC 193 (346)
Q Consensus 115 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 193 (346)
+.-+.....+.-..-.+.++++++ ++.++++.++...|..|.+... +.+..+... .....=.+..|+. ....++++
T Consensus 145 ~~~~s~~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a-~t~D~gF~~S~s~-~~~~FAv~ 221 (344)
T KOG4532|consen 145 VSGDSNKFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEA-PTSDHGFYNSFSE-NDLQFAVV 221 (344)
T ss_pred EecCcccceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEec-ccCCCceeeeecc-CcceEEEE
Confidence 765443222221112378999999 8999999999999999988643 333222211 2334456788986 88899999
Q ss_pred ecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-C---CEEEEEeecCeEEEEcCCC
Q 019117 194 GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-G---DFILSKSVDNEIVLWEPKM 269 (346)
Q Consensus 194 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~---~~l~~~~~d~~i~iwd~~~ 269 (346)
..||++.|||++.....+. ....+-..|.+.++.+.|+ + ++|...-.-+.+.+.|+++
T Consensus 222 ~Qdg~~~I~DVR~~~tpm~------------------~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 222 FQDGTCAIYDVRNMATPMA------------------EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred ecCCcEEEEEecccccchh------------------hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence 9999999999998432111 1122334588899999998 2 3555555567899999999
Q ss_pred CCCCCCCccccccccccCC-CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117 270 KEQSPGEGTADILQKYPVP-ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (346)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (346)
.+......... ..+..| ...|....|+.+++ -+.+.+++ .+.=|++.+.
T Consensus 284 ~~~~q~I~i~~--d~~~~~~tq~ifgt~f~~~n~--s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 284 YVNHQVIVIPD--DVERKHNTQHIFGTNFNNENE--SNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred CceeeEEecCc--cccccccccccccccccCCCc--ccccccch-hhheeecccc
Confidence 87422111110 111122 23477888888874 33333333 3555666554
No 281
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=8e-10 Score=93.95 Aligned_cols=231 Identities=13% Similarity=0.211 Sum_probs=155.5
Q ss_pred ccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc---------------eeeeeccCCCceEEEEEeCCCCceEEEe
Q 019117 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK---------------LHKSFVGHGDSINEIRTQPLKPSLVVSA 147 (346)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 147 (346)
.....+++|. .+.. +++.|+.||.+++..+.+.. .-+++.+|+..|.-+.|+. ..+.|-+.
T Consensus 14 nvkL~c~~WN--ke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtS 89 (1189)
T KOG2041|consen 14 NVKLHCAEWN--KESG-YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTS 89 (1189)
T ss_pred CceEEEEEEc--ccCC-eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-cccccccc
Confidence 3456677776 5555 99999999999999876532 2356789999999999998 88899999
Q ss_pred eCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCc
Q 019117 148 SKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK 227 (346)
Q Consensus 148 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 227 (346)
..+|.|.+|-+-.+.-...+... ...+.|.+++|.. +|..++..-.||.|.+=.+...+.
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiNn-RnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNRI------------------ 149 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMINN-RNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNRI------------------ 149 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhhC-cCccEEEEEEEcC-CCcEEEEEEccCCEEEEeecccee------------------
Confidence 99999999999887655544321 2567899999997 899999999999998876665211
Q ss_pred cceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCC--ccccccccccCCCcCeeEEEEe-----
Q 019117 228 YVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE--GTADILQKYPVPECDIWFIKFS----- 298 (346)
Q Consensus 228 ~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s----- 298 (346)
..-.........+.|+ .+.++.+-..|.+.++|....-..... ........+......|..+.|.
T Consensus 150 ------wgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~ 223 (1189)
T KOG2041|consen 150 ------WGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQ 223 (1189)
T ss_pred ------cchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccc
Confidence 1000111112345565 345566666788999987654211000 0000001111111234444443
Q ss_pred ---ecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCC
Q 019117 299 ---CDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSV 345 (346)
Q Consensus 299 ---~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~ 345 (346)
||. ..|+++-.+|.+.|-.-.+......+.....+....|||+|.
T Consensus 224 ~v~pdr--P~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~ 271 (1189)
T KOG2041|consen 224 PVPPDR--PRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGA 271 (1189)
T ss_pred cCCCCC--CEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCc
Confidence 344 689999999999998777665556667777888999999985
No 282
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.16 E-value=1.1e-07 Score=77.48 Aligned_cols=143 Identities=15% Similarity=0.080 Sum_probs=103.0
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCCc--EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~--v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 107 (346)
-+|...|.-..+.- +++-++.|..|+ +.|||..+++..+... .-+.|.++..+ ++|+ +++.+...
T Consensus 356 v~~~~~VrY~r~~~----~~e~~vigt~dgD~l~iyd~~~~e~kr~e~------~lg~I~av~vs--~dGK-~~vvaNdr 422 (668)
T COG4946 356 VGKKGGVRYRRIQV----DPEGDVIGTNDGDKLGIYDKDGGEVKRIEK------DLGNIEAVKVS--PDGK-KVVVANDR 422 (668)
T ss_pred cCCCCceEEEEEcc----CCcceEEeccCCceEEEEecCCceEEEeeC------CccceEEEEEc--CCCc-EEEEEcCc
Confidence 45677777777765 345666666665 9999977665433322 34566667666 9999 99999988
Q ss_pred CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCC----CEEEEecCCCeeEEEecccCCCCcceEEEEec
Q 019117 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE----SVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 183 (346)
Q Consensus 108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 183 (346)
..|-+.|+++++....-+...+-|+.+.|+| ++.++|-+--+| .|+++|+..++....-. ....=.+=+|.
T Consensus 423 ~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT----~ta~DfsPaFD 497 (668)
T COG4946 423 FELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT----PTAYDFSPAFD 497 (668)
T ss_pred eEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC----CcccccCcccC
Confidence 9999999999987666666778999999999 899998776554 68999998777654433 33333455678
Q ss_pred CCCCcEEE
Q 019117 184 PSDIYRIA 191 (346)
Q Consensus 184 ~~~~~~l~ 191 (346)
| ++++|.
T Consensus 498 ~-d~ryLY 504 (668)
T COG4946 498 P-DGRYLY 504 (668)
T ss_pred C-CCcEEE
Confidence 7 665554
No 283
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.15 E-value=6.8e-08 Score=81.75 Aligned_cols=233 Identities=11% Similarity=0.018 Sum_probs=133.7
Q ss_pred cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCC
Q 019117 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG 128 (346)
Q Consensus 50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 128 (346)
..++.++.++ +..+|..+|+.+..... ...+.+... -.+. .++.+..+|.+..||.++++.+..+....
T Consensus 106 ~~v~v~~~~g~l~ald~~tG~~~W~~~~------~~~~~~~p~---v~~~-~v~v~~~~g~l~a~d~~tG~~~W~~~~~~ 175 (377)
T TIGR03300 106 GLVFVGTEKGEVIALDAEDGKELWRAKL------SSEVLSPPL---VANG-LVVVRTNDGRLTALDAATGERLWTYSRVT 175 (377)
T ss_pred CEEEEEcCCCEEEEEECCCCcEeeeecc------CceeecCCE---EECC-EEEEECCCCeEEEEEcCCCceeeEEccCC
Confidence 3444444444 77777767766544331 111111111 1233 56777789999999999999887765432
Q ss_pred CceE-----EEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC-cc---eEEEEecC-CCCcEEEEEecCCe
Q 019117 129 DSIN-----EIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR-NE---VLSVDFHP-SDIYRIASCGMDNT 198 (346)
Q Consensus 129 ~~v~-----~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~---v~~~~~~~-~~~~~l~s~~~d~~ 198 (346)
..+. ..... + ..++.+..++.+..+|.++|+.+.......... .. ...+.-+| -.+..++.++.+|.
T Consensus 176 ~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~ 252 (377)
T TIGR03300 176 PALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGR 252 (377)
T ss_pred CceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCE
Confidence 2111 11121 2 467778888999999999998776543210000 00 00110011 02346777788999
Q ss_pred EEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCcc
Q 019117 199 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGT 278 (346)
Q Consensus 199 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 278 (346)
+..||..+++... .... .........++.++.++.||.+..+|..+++.
T Consensus 253 l~a~d~~tG~~~W-----------------------~~~~--~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~------ 301 (377)
T TIGR03300 253 VAALDLRSGRVLW-----------------------KRDA--SSYQGPAVDDNRLYVTDADGVVVALDRRSGSE------ 301 (377)
T ss_pred EEEEECCCCcEEE-----------------------eecc--CCccCceEeCCEEEEECCCCeEEEEECCCCcE------
Confidence 9999998743211 1110 01122233477888888999999999988863
Q ss_pred ccccccccC-CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee
Q 019117 279 ADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC 333 (346)
Q Consensus 279 ~~~~~~~~~-~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 333 (346)
+.+... .......... .+ ..|++++.+|.|+++|..+++.+......+
T Consensus 302 ---~W~~~~~~~~~~ssp~i--~g--~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 302 ---LWKNDELKYRQLTAPAV--VG--GYLVVGDFEGYLHWLSREDGSFVARLKTDG 350 (377)
T ss_pred ---EEccccccCCccccCEE--EC--CEEEEEeCCCEEEEEECCCCCEEEEEEcCC
Confidence 222211 1111111122 23 478889999999999999998766655433
No 284
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=8.9e-09 Score=87.82 Aligned_cols=272 Identities=11% Similarity=0.052 Sum_probs=173.5
Q ss_pred CCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEee----------eecCCCccceEEEEEEEcCCCCcEE
Q 019117 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQS----------YVDEDKEESFYTVSWACNVDGIPFL 101 (346)
Q Consensus 33 ~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~~~l 101 (346)
.....|++|+. ...++|.|+.|| +++..+.+...-....+ ...++|...|..+.|. .+.+ .|
T Consensus 14 nvkL~c~~WNk----e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWN--e~~Q-KL 86 (1189)
T KOG2041|consen 14 NVKLHCAEWNK----ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWN--ENNQ-KL 86 (1189)
T ss_pred CceEEEEEEcc----cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEec--cccc-cc
Confidence 34578999997 668999999999 88887765432211111 1224588999999996 4444 78
Q ss_pred EEeecCCeEEEEEccCcceeeee--ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEE
Q 019117 102 VAGGINGIIRVIDVSNEKLHKSF--VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS 179 (346)
Q Consensus 102 ~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 179 (346)
-+...+|.|.+|-+-.+.-...+ ....+.|.+++|+. ++..++....||.|.+=.+. |..+..-. -.......
T Consensus 87 TtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvd-GNRIwgKe---Lkg~~l~h 161 (1189)
T KOG2041|consen 87 TTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVD-GNRIWGKE---LKGQLLAH 161 (1189)
T ss_pred cccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeec-cceecchh---cchheccc
Confidence 99999999999999877533322 12456789999999 89999999999999887765 44333221 12233457
Q ss_pred EEecCCCCcEEEEEecCCeEEEEEccccc-eeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-C-------
Q 019117 180 VDFHPSDIYRIASCGMDNTVKIWSMKEFW-TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-G------- 250 (346)
Q Consensus 180 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~------- 250 (346)
+.|++ +...++.+-..|.+.+||....- ..+....... -...+...+..|..+.|. |
T Consensus 162 v~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn-------------~tg~~s~~~~kia~i~w~~g~~~~v~p 227 (1189)
T KOG2041|consen 162 VLWSE-DLEQALFKKANGETHLYDNQGNFERKLEKDCEVN-------------GTGIFSNFPTKIAEIEWNTGPYQPVPP 227 (1189)
T ss_pred eeecc-cHHHHHhhhcCCcEEEecccccHHHhhhhceEEe-------------eeeeecCCCccccceeeccCccccCCC
Confidence 88998 87878888888999999987611 1111111000 000111112234555554 1
Q ss_pred --CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCC---------cEEEEE
Q 019117 251 --DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG---------KIFVWE 319 (346)
Q Consensus 251 --~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg---------~i~iwd 319 (346)
-.|+++-..|.+.|-.-.+... ++-. . -...+..+.|+++| .+|++++.+. .|.+|.
T Consensus 228 drP~lavcy~nGr~QiMR~eND~~--------Pvv~-d-tgm~~vgakWnh~G--~vLAvcG~~~da~~~~d~n~v~Fys 295 (1189)
T KOG2041|consen 228 DRPRLAVCYANGRMQIMRSENDPE--------PVVV-D-TGMKIVGAKWNHNG--AVLAVCGNDSDADEPTDSNKVHFYS 295 (1189)
T ss_pred CCCEEEEEEcCceehhhhhcCCCC--------CeEE-e-cccEeecceecCCC--cEEEEccCcccccCccccceEEEec
Confidence 2688888888887766544321 1111 1 12467888999999 7899988643 455555
Q ss_pred cCCCCcceeeeeeee-EEEEEecCC
Q 019117 320 LQSSPPVLIARLICF-SLHVKYNPQ 343 (346)
Q Consensus 320 ~~~~~~~~~~~~~~~-~~~~~~spd 343 (346)
. -|+.+..++.++. ++.++|--.
T Consensus 296 p-~G~i~gtlkvpg~~It~lsWEg~ 319 (1189)
T KOG2041|consen 296 P-YGHIVGTLKVPGSCITGLSWEGT 319 (1189)
T ss_pred c-chhheEEEecCCceeeeeEEcCC
Confidence 3 3455556666554 666777543
No 285
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.12 E-value=4.9e-08 Score=77.08 Aligned_cols=229 Identities=13% Similarity=0.026 Sum_probs=127.9
Q ss_pred EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCC
Q 019117 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL 139 (346)
Q Consensus 60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 139 (346)
|..||..+++.+..... . . .........+ +++. .+++++.++.|..||..+|+.+..+.. .+.+......
T Consensus 5 l~~~d~~tG~~~W~~~~-~-~-~~~~~~~~~~---~~~~-~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~-- 74 (238)
T PF13360_consen 5 LSALDPRTGKELWSYDL-G-P-GIGGPVATAV---PDGG-RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV-- 74 (238)
T ss_dssp EEEEETTTTEEEEEEEC-S-S-SCSSEEETEE---EETT-EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE--
T ss_pred EEEEECCCCCEEEEEEC-C-C-CCCCccceEE---EeCC-EEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee--
Confidence 77777777776665542 1 0 0111111112 3455 677878999999999999998877764 2222211122
Q ss_pred CCceEEEeeCCCCEEEEecCCCeeEEEe-cccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeec
Q 019117 140 KPSLVVSASKDESVRLWNVQTGICILIF-AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT 218 (346)
Q Consensus 140 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 218 (346)
.+..++.++.++.|..+|..+|+.+... ................. .+..++.+..++.|..+|+++++..........
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred cccccccccceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 3456666667889999999999999884 32100011112222222 356777888899999999998554222211000
Q ss_pred CCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCe-EEEEcCCCCCCCCCCccccccccccCCCcCeeEEEE
Q 019117 219 DLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNE-IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF 297 (346)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 297 (346)
.. ...+.........+.+.+..+..++.++. +.+ |+.+++ .+.... ...+..+ .
T Consensus 154 ~~------------~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~---------~~w~~~--~~~~~~~-~ 208 (238)
T PF13360_consen 154 RG------------SSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGE---------KLWSKP--ISGIYSL-P 208 (238)
T ss_dssp -S------------S--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTE---------EEEEEC--SS-ECEC-E
T ss_pred CC------------CcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCC---------EEEEec--CCCccCC-c
Confidence 00 00000001111233333447777777775 555 998876 222211 1122221 3
Q ss_pred eecCCcceEEEEcCCCcEEEEEcCCCCcc
Q 019117 298 SCDFHYNAAAIGNREGKIFVWELQSSPPV 326 (346)
Q Consensus 298 s~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 326 (346)
..++ ..|+.++.++.|..||+++++.+
T Consensus 209 ~~~~--~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 209 SVDG--GTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp ECCC--TEEEEEETTTEEEEEETTTTEEE
T ss_pred eeeC--CEEEEEeCCCEEEEEECCCCCEE
Confidence 3444 46777778999999999999754
No 286
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.10 E-value=2.7e-09 Score=79.81 Aligned_cols=143 Identities=13% Similarity=0.190 Sum_probs=95.7
Q ss_pred EEEEeecCCeEEEEEccCcce-eeeecc-CCCceEEEEEeCCCCceEEEeeC-----CCCEEEEecCCCeeEEEecccCC
Q 019117 100 FLVAGGINGIIRVIDVSNEKL-HKSFVG-HGDSINEIRTQPLKPSLVVSASK-----DESVRLWNVQTGICILIFAGAGG 172 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~ 172 (346)
-++++..||.+.+.+.+.-.. ...+.. |.+. .+.+... .++.+.++.- -+..+.|+++..+.+..-. .
T Consensus 103 ~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~---~ 177 (319)
T KOG4714|consen 103 RVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICR-HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK---K 177 (319)
T ss_pred ceEecCCCceEEEEechHHHhhhhhcccccccc-cccceee-cccEEecCCcceEeeccceeeecccccccccccc---c
Confidence 599999999999999765211 111211 2222 1222222 3344444321 1234556654333222211 2
Q ss_pred CCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---
Q 019117 173 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--- 249 (346)
Q Consensus 173 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--- 249 (346)
....|.+++-+|....++++|+.||.+.+||.++. ..+...+..|+..|..+.|+
T Consensus 178 ~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~----------------------~~p~S~l~ahk~~i~eV~FHpk~ 235 (319)
T KOG4714|consen 178 ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV----------------------AMPVSLLKAHKAEIWEVHFHPKN 235 (319)
T ss_pred ccccchhhhCCcccccEEEEecCCCeEEEEEcccc----------------------cchHHHHHHhhhhhhheeccCCC
Confidence 33459999999977788899999999999999983 34566778899999999998
Q ss_pred CCEEEEEeecCeEEEEcCCC
Q 019117 250 GDFILSKSVDNEIVLWEPKM 269 (346)
Q Consensus 250 ~~~l~~~~~d~~i~iwd~~~ 269 (346)
+..|+++++||.+-.||..+
T Consensus 236 p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 236 PEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred chheeEecCCCcEEEEcCCC
Confidence 78999999999999999884
No 287
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=2.2e-10 Score=88.86 Aligned_cols=158 Identities=11% Similarity=0.076 Sum_probs=118.9
Q ss_pred EEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCC
Q 019117 145 VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF 224 (346)
Q Consensus 145 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 224 (346)
++.+.+..|-+-|+.++-. +.|. ..+.|.++.|.. .+.+++.|...|.|..+|++....
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~----sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnq--------------- 286 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ----SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQ--------------- 286 (425)
T ss_pred ecccccceeEEEEeecccc-cccc----cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeeccc---------------
Confidence 5556677888889887643 3443 567899999985 789999999999999999998310
Q ss_pred CCccceeceEEEeecccceEEEE---ecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecC
Q 019117 225 PTKYVQFPVFIASVHSNYVDCNR---WLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF 301 (346)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~i~~~~---~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 301 (346)
. .......-.|...|+++. |++++|++.+.+|+|++||++.-+ ...-+..+.+|...-..+-+.-+.
T Consensus 287 ---G-~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K------~~~~V~qYeGHvN~~a~l~~~v~~ 356 (425)
T KOG2695|consen 287 ---G-NGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATK------CKKSVMQYEGHVNLSAYLPAHVKE 356 (425)
T ss_pred ---C-CCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhh------cccceeeeeccccccccccccccc
Confidence 0 112234456888888865 458999999999999999999766 222477888887666566666565
Q ss_pred CcceEEEEcCCCcEEEEEcCCCCcceeeeeee
Q 019117 302 HYNAAAIGNREGKIFVWELQSSPPVLIARLIC 333 (346)
Q Consensus 302 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 333 (346)
+...+++++.|...+||.+..+.++.....+.
T Consensus 357 eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 357 EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred ccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 55789999999999999999998776655543
No 288
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.07 E-value=1.3e-09 Score=92.93 Aligned_cols=201 Identities=21% Similarity=0.373 Sum_probs=141.3
Q ss_pred ceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCc-ceeeeeccCC--CceEEEEEeCC--CCceEEEeeCCCCEEEEecC
Q 019117 85 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-KLHKSFVGHG--DSINEIRTQPL--KPSLVVSASKDESVRLWNVQ 159 (346)
Q Consensus 85 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~--~~v~~~~~~~~--~~~~l~s~~~d~~i~iwd~~ 159 (346)
.+.++++. |-|+ -++.++.-| +.+-|+... .+.+-+. |. -.|..+.|+|. ....+++.+. ..-.+|++.
T Consensus 26 ~~~a~si~--p~gr-di~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~-qkaiiwnlA 99 (1081)
T KOG0309|consen 26 GFNAVSIN--PSGR-DIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSN-QKAIIWNLA 99 (1081)
T ss_pred cccceeec--cccc-hhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCc-chhhhhhhh
Confidence 34445554 7787 778888776 556666543 3333332 32 35677788773 2345555554 455689885
Q ss_pred CC--eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe
Q 019117 160 TG--ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 237 (346)
Q Consensus 160 ~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (346)
.. +.+.-+.. +|...|+.+.|+|+....+++++.|-.+..||+++. ..++....
T Consensus 100 ~ss~~aIef~lh--ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp----------------------~~p~ys~~ 155 (1081)
T KOG0309|consen 100 KSSSNAIEFVLH--GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP----------------------HRPFYSTS 155 (1081)
T ss_pred cCCccceEEEEe--cCccceeccccCCCCCcceeeccccccceeeeccCC----------------------Ccceeeee
Confidence 32 33332222 799999999999988999999999999999999993 34555665
Q ss_pred ecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcE
Q 019117 238 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI 315 (346)
Q Consensus 238 ~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i 315 (346)
.-......+.|+ .-.+++.+..+.|++||.+.+. .++..+++|...|..++|..--. ..+.+++.||+|
T Consensus 156 ~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs--------~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tv 226 (1081)
T KOG0309|consen 156 SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS--------TPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTV 226 (1081)
T ss_pred cccccCceeeecccCcchhhhccCCceEEEeccCCC--------cceEEecccceeeehHHHhhhhh-hhhcccCCCCce
Confidence 555667778888 3344445566789999999876 37788888888899998886544 578899999999
Q ss_pred EEEEcCCCC
Q 019117 316 FVWELQSSP 324 (346)
Q Consensus 316 ~iwd~~~~~ 324 (346)
++||.....
T Consensus 227 kfw~y~kSt 235 (1081)
T KOG0309|consen 227 KFWDYSKST 235 (1081)
T ss_pred eeecccccc
Confidence 999987643
No 289
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.07 E-value=7.7e-09 Score=79.49 Aligned_cols=219 Identities=15% Similarity=0.237 Sum_probs=136.9
Q ss_pred ccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc-----eeeeeccCC------------CceEEEEEeCC-CCceE
Q 019117 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-----LHKSFVGHG------------DSINEIRTQPL-KPSLV 144 (346)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~-~~~~l 144 (346)
.+.|+++.|. ..|. ||++|...|.|.+|.-.... ....+++|. ..|..+.|... +...+
T Consensus 26 ad~ItaVefd--~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 26 ADKITAVEFD--ETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred cceeeEEEec--cccc-eEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 3455555554 7788 99999999999999854432 223344543 35778888752 33467
Q ss_pred EEeeCCCCEEEEecCCCee-------------------EEE---ecc------------------cCCCCcceEEEEecC
Q 019117 145 VSASKDESVRLWNVQTGIC-------------------ILI---FAG------------------AGGHRNEVLSVDFHP 184 (346)
Q Consensus 145 ~s~~~d~~i~iwd~~~~~~-------------------~~~---~~~------------------~~~~~~~v~~~~~~~ 184 (346)
+..+.|.+|++|.+..... +.. +.. ...|...+.++.|..
T Consensus 103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns 182 (460)
T COG5170 103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS 182 (460)
T ss_pred EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence 7778899999998864310 000 000 015777888999986
Q ss_pred CCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeec-----ccceEEEEec---CCEEEEE
Q 019117 185 SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH-----SNYVDCNRWL---GDFILSK 256 (346)
Q Consensus 185 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~---~~~l~~~ 256 (346)
+...++++ .|=.|.+|++.-... ...+.-+..| ...|++..|+ .+.+.-.
T Consensus 183 -D~et~lSa-DdLrINLWnl~i~D~--------------------sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYS 240 (460)
T COG5170 183 -DKETLLSA-DDLRINLWNLEIIDG--------------------SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYS 240 (460)
T ss_pred -chheeeec-cceeeeeccccccCC--------------------ceEEEeccCccHHHHHHHHhhcccCHhHcceEEEe
Confidence 77766665 477899999876321 1112222222 2446777777 5678888
Q ss_pred eecCeEEEEcCCCCCCCC-------CCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC-ccee
Q 019117 257 SVDNEIVLWEPKMKEQSP-------GEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP-PVLI 328 (346)
Q Consensus 257 ~~d~~i~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~ 328 (346)
+..|.|++-|++....-. ......-..-+..-...|..+.|+++| +++++-+. -+++|||+...+ ++..
T Consensus 241 sSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng--ryIlsRdy-ltvkiwDvnm~k~pikT 317 (460)
T COG5170 241 SSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG--RYILSRDY-LTVKIWDVNMAKNPIKT 317 (460)
T ss_pred cCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC--cEEEEecc-ceEEEEecccccCCcee
Confidence 889999999998442100 000000111222234578899999999 67877665 589999998744 4444
Q ss_pred e
Q 019117 329 A 329 (346)
Q Consensus 329 ~ 329 (346)
.
T Consensus 318 i 318 (460)
T COG5170 318 I 318 (460)
T ss_pred e
Confidence 4
No 290
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=2.1e-09 Score=88.88 Aligned_cols=268 Identities=14% Similarity=0.151 Sum_probs=168.0
Q ss_pred Ccceeeeccccccccce--eeeeecccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCcc
Q 019117 7 GCEPLVGSLTPSKKREY--RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEE 84 (346)
Q Consensus 7 g~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~ 84 (346)
+.....|++.++..... .+..+++.|+.+|.++-|-. +.+.++++ +++|.+||...+..+..+..-. ..+
T Consensus 756 DKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~----~lr~i~Sc-D~giHlWDPFigr~Laq~~dap---k~~ 827 (1034)
T KOG4190|consen 756 DKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA----DLRSIASC-DGGIHLWDPFIGRLLAQMEDAP---KEG 827 (1034)
T ss_pred CceEEEEEeccccCccccceeeeEhhhccCcccceeeee----ccceeeec-cCcceeecccccchhHhhhcCc---ccC
Confidence 44566788887665433 36667799999999999987 55667666 5669999988887765433222 223
Q ss_pred ceEEEEEEEcCCCCcEEEEe-ecCCeEEEEEccCcceeeee-----ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEec
Q 019117 85 SFYTVSWACNVDGIPFLVAG-GINGIIRVIDVSNEKLHKSF-----VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158 (346)
Q Consensus 85 ~v~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~ 158 (346)
.+..+....+-+.. ++..| +...+|+++|.+.++-+..+ .+.+..+.+++..+ .++.++.+-..|+|.+.|.
T Consensus 828 a~~~ikcl~nv~~~-iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDa 905 (1034)
T KOG4190|consen 828 AGGNIKCLENVDRH-ILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDA 905 (1034)
T ss_pred CCceeEecccCcch-heeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEec
Confidence 33334444333444 44444 78899999999888755444 34556789999999 8999999999999999999
Q ss_pred CCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEE-EEccccceeeeeceeecCCCCCCCCccceeceEEEe
Q 019117 159 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI-WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 237 (346)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (346)
++|+.+..++ ........++- | ....++....|.++.+ |..-.+.... ...
T Consensus 906 R~G~vINswr---pmecdllqlaa-p-sdq~L~~saldHslaVnWhaldgimh~-----------------------q~k 957 (1034)
T KOG4190|consen 906 RNGKVINSWR---PMECDLLQLAA-P-SDQALAQSALDHSLAVNWHALDGIMHL-----------------------QDK 957 (1034)
T ss_pred CCCceeccCC---cccchhhhhcC-c-hhHHHHhhcccceeEeeehhcCCeeee-----------------------ccC
Confidence 9999988877 34444444442 4 5566777777888888 7655521111 111
Q ss_pred ecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEE
Q 019117 238 VHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV 317 (346)
Q Consensus 238 ~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~i 317 (346)
..+.+..-+.--|-.|+++...+.+.+|.-....... .....++. ....+..++++.-|-. .-++.|.+.|.|.+
T Consensus 958 pppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~--stitKiR~-d~f~G~lTala~LPLN--~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 958 PPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAE--STITKIRP-DEFPGTLTALAPLPLN--CAFLAGNEHGAIAL 1032 (1034)
T ss_pred CCCcchhhhhccCceeEEeccCcEEEEEecchhhhhh--hhhccccc-cccCCccceeeecccc--chhhccCCCCceee
Confidence 1111111111115667777777777777532211000 00001111 1123567778888876 56777888888765
No 291
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.07 E-value=1.4e-07 Score=79.84 Aligned_cols=218 Identities=8% Similarity=0.041 Sum_probs=127.9
Q ss_pred EEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCC
Q 019117 51 VFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD 129 (346)
Q Consensus 51 ~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 129 (346)
.++.+..++ +..||..+++.+.................... .+ . .++.+..++.+..+|..+++.+........
T Consensus 147 ~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~---~~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~ 221 (377)
T TIGR03300 147 LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI---AD-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALP 221 (377)
T ss_pred EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE---EC-C-EEEEECCCCEEEEEEccCCCEeeeeccccC
Confidence 444444455 99999988887665542110000000000111 12 3 677888889999999999987655431100
Q ss_pred ----c------e-EEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCe
Q 019117 130 ----S------I-NEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT 198 (346)
Q Consensus 130 ----~------v-~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 198 (346)
. + ....+ .+..++.++.+|.+..+|..+++.+.... ... ...... .+..++.++.+|.
T Consensus 222 ~g~~~~~~~~~~~~~p~~---~~~~vy~~~~~g~l~a~d~~tG~~~W~~~----~~~-~~~p~~---~~~~vyv~~~~G~ 290 (377)
T TIGR03300 222 KGRTELERLVDVDGDPVV---DGGQVYAVSYQGRVAALDLRSGRVLWKRD----ASS-YQGPAV---DDNRLYVTDADGV 290 (377)
T ss_pred CCCCchhhhhccCCccEE---ECCEEEEEEcCCEEEEEECCCCcEEEeec----cCC-ccCceE---eCCEEEEECCCCe
Confidence 0 0 11112 23577778889999999999998877665 111 122222 3456777788999
Q ss_pred EEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCcc
Q 019117 199 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGT 278 (346)
Q Consensus 199 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 278 (346)
+..+|..+++...... ........+....++.+++++.+|.|.++|..+++
T Consensus 291 l~~~d~~tG~~~W~~~----------------------~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~------- 341 (377)
T TIGR03300 291 VVALDRRSGSELWKND----------------------ELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGS------- 341 (377)
T ss_pred EEEEECCCCcEEEccc----------------------cccCCccccCEEECCEEEEEeCCCEEEEEECCCCC-------
Confidence 9999998743211100 00011112222237899999999999999999887
Q ss_pred ccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117 279 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (346)
Q Consensus 279 ~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw 318 (346)
.+.+++.+...+..--...++ .|+.++.||.|+.|
T Consensus 342 --~~~~~~~~~~~~~~sp~~~~~---~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 342 --FVARLKTDGSGIASPPVVVGD---GLLVQTRDGDLYAF 376 (377)
T ss_pred --EEEEEEcCCCccccCCEEECC---EEEEEeCCceEEEe
Confidence 455555444333222223333 47788889998875
No 292
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.07 E-value=9.5e-07 Score=69.71 Aligned_cols=255 Identities=13% Similarity=0.074 Sum_probs=149.7
Q ss_pred CCcEEEEEeccCc-eeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec---CCeEEEEEccC--cceee--eeccCC
Q 019117 57 GNRVTVYQCLEGG-VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI---NGIIRVIDVSN--EKLHK--SFVGHG 128 (346)
Q Consensus 57 ~~~v~i~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~--~~~~~--~~~~~~ 128 (346)
+.+|.+|++.+.. .+..++.. ......+-+++. |+++ .|.++.. +|.|..|.++. |+... ......
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v---~~~~nptyl~~~--~~~~-~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g 88 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLV---AELGNPTYLAVN--PDQR-HLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPG 88 (346)
T ss_pred CCceEEEEEeCcccccchhhhc---cccCCCceEEEC--CCCC-EEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCC
Confidence 4559999998432 23322221 133445556666 8888 7777754 47788887764 44322 222223
Q ss_pred CceEEEEEeCCCCceEEEee-CCCCEEEEecCC-Cee---EEEecccCCCCcc----------eEEEEecCCCCcEEEEE
Q 019117 129 DSINEIRTQPLKPSLVVSAS-KDESVRLWNVQT-GIC---ILIFAGAGGHRNE----------VLSVDFHPSDIYRIASC 193 (346)
Q Consensus 129 ~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~-~~~---~~~~~~~~~~~~~----------v~~~~~~~~~~~~l~s~ 193 (346)
.+-+-+++++ ++++++++. ..|.|.++-++. |.. +..+. |.+. +....+.| ++++|++.
T Consensus 89 ~~p~yvsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~----h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~ 162 (346)
T COG2706 89 SPPCYVSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK----HTGSGPHERQESPHVHSANFTP-DGRYLVVP 162 (346)
T ss_pred CCCeEEEECC-CCCEEEEEEccCceEEEEEcccCCccccceeeee----cCCCCCCccccCCccceeeeCC-CCCEEEEe
Confidence 3447899999 777777665 468899999865 332 22332 4444 78889999 88777776
Q ss_pred ec-CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEee-cCeEEEEcCCC
Q 019117 194 GM-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-DNEIVLWEPKM 269 (346)
Q Consensus 194 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-d~~i~iwd~~~ 269 (346)
.. -..|.+|++..+........ .+ .-...-+.|.|+ +++.....+ +++|.+|..+.
T Consensus 163 DLG~Dri~~y~~~dg~L~~~~~~-------------------~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 163 DLGTDRIFLYDLDDGKLTPADPA-------------------EV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred ecCCceEEEEEcccCcccccccc-------------------cc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence 44 34799999986433211111 01 112234455555 777766665 89999999987
Q ss_pred C--CCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc-CCCcEEEEEcCCCCcc--e--eeeeeee-EEEEEec
Q 019117 270 K--EQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-REGKIFVWELQSSPPV--L--IARLICF-SLHVKYN 341 (346)
Q Consensus 270 ~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~iwd~~~~~~~--~--~~~~~~~-~~~~~~s 341 (346)
. +.............+.+ ......|.+++|| ++|.++- ....|.+|.+....-. . .....+. +....|+
T Consensus 223 ~~g~~~~lQ~i~tlP~dF~g-~~~~aaIhis~dG--rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~ 299 (346)
T COG2706 223 AVGKFEELQTIDTLPEDFTG-TNWAAAIHISPDG--RFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNIN 299 (346)
T ss_pred CCceEEEeeeeccCccccCC-CCceeEEEECCCC--CEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeC
Confidence 4 21111111111122222 3456778999999 5665543 3458888888664322 1 1222333 6778889
Q ss_pred CCCCC
Q 019117 342 PQSVY 346 (346)
Q Consensus 342 pdg~~ 346 (346)
|+|+|
T Consensus 300 ~~g~~ 304 (346)
T COG2706 300 PSGRF 304 (346)
T ss_pred CCCCE
Confidence 98875
No 293
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.05 E-value=2.3e-07 Score=76.20 Aligned_cols=258 Identities=10% Similarity=0.123 Sum_probs=156.4
Q ss_pred CceEEEEEEeecCCCccEEEEEcC----------------CcEEEEEeccCceeeeEeeeecCCCccceE-EEEEEEcCC
Q 019117 34 RPLYAVVFNFIDSRYFNVFATVGG----------------NRVTVYQCLEGGVIAALQSYVDEDKEESFY-TVSWACNVD 96 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~~~----------------~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~ 96 (346)
..|..+.|+| .+++|.+=+. +.+.+||..++..+..+...... ...+ .+.|+ .+
T Consensus 72 ~~V~~~~fSP----~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~---~~~Wp~~k~s--~~ 142 (561)
T COG5354 72 PDVKYLDFSP----NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP---YLGWPVLKFS--ID 142 (561)
T ss_pred CCceecccCc----ccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCc---ccccceeeee--ec
Confidence 3588899999 7889988654 23789999999887776643221 1122 45666 44
Q ss_pred CCcEEEEeecCCeEEEEEccCccee-eeecc-CCCceEEEEEeCC-CCceEEE-----eeCCCCEEEEecCCCeeEEEec
Q 019117 97 GIPFLVAGGINGIIRVIDVSNEKLH-KSFVG-HGDSINEIRTQPL-KPSLVVS-----ASKDESVRLWNVQTGICILIFA 168 (346)
Q Consensus 97 ~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~-~~~~v~~~~~~~~-~~~~l~s-----~~~d~~i~iwd~~~~~~~~~~~ 168 (346)
.+ ++|-. ....++|+++ ++... ..+.. ....|....|+|. +...|+. .+.++++++|.+..+..+..-.
T Consensus 143 D~-y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~ 219 (561)
T COG5354 143 DK-YVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN 219 (561)
T ss_pred ch-hhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee
Confidence 55 55544 3457999997 43321 11111 1356888999993 2233343 4667899999998666554432
Q ss_pred ccCCCCcceEEEEecCCCCcEEEEEe-----------cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe
Q 019117 169 GAGGHRNEVLSVDFHPSDIYRIASCG-----------MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 237 (346)
Q Consensus 169 ~~~~~~~~v~~~~~~~~~~~~l~s~~-----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (346)
- ..-.=..+.|++ .+++++.-- ....+.+++++.. .+....
T Consensus 220 l---fk~~~~qLkW~~-~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~------------------------~i~V~~ 271 (561)
T COG5354 220 L---FKVSGVQLKWQV-LGKYLLVLVMTHTKSNKSYFGESNLYLLRITER------------------------SIPVEK 271 (561)
T ss_pred e---EeecccEEEEec-CCceEEEEEEEeeecccceeccceEEEEeeccc------------------------ccceec
Confidence 1 112223577887 555443221 1245667766641 111122
Q ss_pred ecccceEEEEec--CCEEEE--EeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcC--
Q 019117 238 VHSNYVDCNRWL--GDFILS--KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR-- 311 (346)
Q Consensus 238 ~~~~~i~~~~~~--~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~-- 311 (346)
.-.+.|....|. ++.+++ |-.+..+.++|++.+- .+..+...=..+-|+|.+ ++++.++-
T Consensus 272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl------------~~~~Pe~~rNT~~fsp~~--r~il~agF~n 337 (561)
T COG5354 272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL------------RFYFPEQKRNTIFFSPHE--RYILFAGFDN 337 (561)
T ss_pred cccccceeeeecccCCceeEEecccccceeecccccce------------EEecCCcccccccccCcc--cEEEEecCCc
Confidence 457788899996 554444 3568899999998752 122233344557799998 67777664
Q ss_pred -CCcEEEEEcCCCCcceeeeeeee-EEEEEecCCCCC
Q 019117 312 -EGKIFVWELQSSPPVLIARLICF-SLHVKYNPQSVY 346 (346)
Q Consensus 312 -dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~spdg~~ 346 (346)
.|.+.+||....... .-.+.+. ..-+.|||||+|
T Consensus 338 l~gni~i~~~~~rf~~-~~~~~~~n~s~~~wspd~qF 373 (561)
T COG5354 338 LQGNIEIFDPAGRFKV-AGAFNGLNTSYCDWSPDGQF 373 (561)
T ss_pred cccceEEeccCCceEE-EEEeecCCceEeeccCCceE
Confidence 468999998775432 2233333 445789999975
No 294
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.04 E-value=4.1e-06 Score=66.39 Aligned_cols=221 Identities=15% Similarity=0.084 Sum_probs=131.4
Q ss_pred EEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEc-CCCCcEEEEeecCCeEEEEEc
Q 019117 38 AVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACN-VDGIPFLVAGGINGIIRVIDV 115 (346)
Q Consensus 38 ~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~l~~~~~dg~i~iwd~ 115 (346)
++.|.+ .++.++++--.++ |..|+..++... .+. ... . ..+.+. +++. |+.+...+ +.++|+
T Consensus 4 gp~~d~---~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~------~~~-~--~G~~~~~~~g~--l~v~~~~~-~~~~d~ 67 (246)
T PF08450_consen 4 GPVWDP---RDGRLYWVDIPGGRIYRVDPDTGEVE-VID------LPG-P--NGMAFDRPDGR--LYVADSGG-IAVVDP 67 (246)
T ss_dssp EEEEET---TTTEEEEEETTTTEEEEEETTTTEEE-EEE------SSS-E--EEEEEECTTSE--EEEEETTC-EEEEET
T ss_pred ceEEEC---CCCEEEEEEcCCCEEEEEECCCCeEE-EEe------cCC-C--ceEEEEccCCE--EEEEEcCc-eEEEec
Confidence 456765 3567777776666 888887665432 222 111 2 333333 5554 55555544 566698
Q ss_pred cCcceeeeecc-----CCCceEEEEEeCCCCceEEEeeCC--------CCEEEEecCCCeeEEEecccCCCCcceEEEEe
Q 019117 116 SNEKLHKSFVG-----HGDSINEIRTQPLKPSLVVSASKD--------ESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 182 (346)
Q Consensus 116 ~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 182 (346)
.+++....... .....+++++.| ++++.++.... |.|..++.. ++...... .-...+.++|
T Consensus 68 ~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~----~~~~pNGi~~ 141 (246)
T PF08450_consen 68 DTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD----GLGFPNGIAF 141 (246)
T ss_dssp TTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE----EESSEEEEEE
T ss_pred CCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEec----CcccccceEE
Confidence 88864433332 345788999999 77777766543 457777776 55444443 4566789999
Q ss_pred cCCCCc-EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeec
Q 019117 183 HPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD 259 (346)
Q Consensus 183 ~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d 259 (346)
+| +++ ++++-+..+.|..+++......... ......+.........++++ |++.++.-..
T Consensus 142 s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~----------------~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~ 204 (246)
T PF08450_consen 142 SP-DGKTLYVADSFNGRIWRFDLDADGGELSN----------------RRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG 204 (246)
T ss_dssp ET-TSSEEEEEETTTTEEEEEEEETTTCCEEE----------------EEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT
T ss_pred CC-cchheeecccccceeEEEeccccccceee----------------eeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC
Confidence 99 665 4556677889999998752211100 01111222222346678887 7776766678
Q ss_pred CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEe-ecCCcceEEE
Q 019117 260 NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS-CDFHYNAAAI 308 (346)
Q Consensus 260 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~~~l~~ 308 (346)
+.|.+++.+ ++ .+..+..+...+++++|. ++.. .+++|
T Consensus 205 ~~I~~~~p~-G~---------~~~~i~~p~~~~t~~~fgg~~~~-~L~vT 243 (246)
T PF08450_consen 205 GRIVVFDPD-GK---------LLREIELPVPRPTNCAFGGPDGK-TLYVT 243 (246)
T ss_dssp TEEEEEETT-SC---------EEEEEE-SSSSEEEEEEESTTSS-EEEEE
T ss_pred CEEEEECCC-cc---------EEEEEcCCCCCEEEEEEECCCCC-EEEEE
Confidence 999999988 54 556666665689999995 4543 34444
No 295
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.9e-09 Score=85.67 Aligned_cols=218 Identities=15% Similarity=0.083 Sum_probs=150.2
Q ss_pred CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccC--c-ceeeeeccCCCceEEEEEeCCCCceEEEeeC-CCCEEEEe
Q 019117 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN--E-KLHKSFVGHGDSINEIRTQPLKPSLVVSASK-DESVRLWN 157 (346)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~iwd 157 (346)
|.+.|+.+... -.+ ++.+++.||.++.|.-.. + +.+..+..|...|.+++.+- ++.++.|.+. |..++++|
T Consensus 8 hrd~i~hv~~t---ka~-fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 8 HRDVITHVFPT---KAK-FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFD 82 (558)
T ss_pred ccceeeeEeee---hhh-eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEE
Confidence 55556554432 234 999999999999998543 1 34556678999999999998 8889999887 99999999
Q ss_pred cCCCeeEEEecccCCCCcceEEEEecCCCC--cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEE
Q 019117 158 VQTGICILIFAGAGGHRNEVLSVDFHPSDI--YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 235 (346)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (346)
+.+-..+..++.. ..++.+..+ .+|.+. .+-++.-.++.|.++|-.... ......
T Consensus 83 vEn~DminmiKL~-~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~---------------------~q~~~f 139 (558)
T KOG0882|consen 83 VENFDMINMIKLV-DLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDF---------------------CQDGYF 139 (558)
T ss_pred eeccchhhhcccc-cCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCc---------------------Ccccee
Confidence 9877666555411 122222222 233111 233344557889999877621 233445
Q ss_pred EeecccceEEEEec--CCEEEEEeecCeEEEEcCCC-CCC-----CCCCccccccccccCCCcCeeEEEEeecCCcceEE
Q 019117 236 ASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKM-KEQ-----SPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA 307 (346)
Q Consensus 236 ~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~-~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~ 307 (346)
-..|..+|.++.+. ++.+++....|.|.-|.... .+. .....+..-+..+........++.|+|++ ..+.
T Consensus 140 kklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g--~qis 217 (558)
T KOG0882|consen 140 KKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG--AQIS 217 (558)
T ss_pred cccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc--Cccc
Confidence 66789999999998 88899999999999999884 111 11111222233444445678899999999 7899
Q ss_pred EEcCCCcEEEEEcCCCCcceee
Q 019117 308 IGNREGKIFVWELQSSPPVLIA 329 (346)
Q Consensus 308 ~~~~dg~i~iwd~~~~~~~~~~ 329 (346)
+-+.|..|+++++.+++.++.+
T Consensus 218 tl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 218 TLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred ccCcccEEEEEEeccchhhhhh
Confidence 9999999999999999866544
No 296
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.03 E-value=1.7e-06 Score=80.25 Aligned_cols=220 Identities=14% Similarity=0.185 Sum_probs=125.1
Q ss_pred EEEEEcCCCCcEEEEeec------CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeC---CCCEEEEecC
Q 019117 89 VSWACNVDGIPFLVAGGI------NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK---DESVRLWNVQ 159 (346)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---d~~i~iwd~~ 159 (346)
++|- .||+ |+|+.+. -..++||+- .|+...+-..-.+--.+++|.| .++++++... ...|.+|.-
T Consensus 215 ISWR--GDG~-yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfEr- 288 (928)
T PF04762_consen 215 ISWR--GDGE-YFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFER- 288 (928)
T ss_pred EEEC--CCCc-EEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEec-
Confidence 4554 8999 8888764 257999994 4765555544445556899999 8899988764 345667763
Q ss_pred CCeeEEEecccC-CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCC-CCccceeceE-EE
Q 019117 160 TGICILIFAGAG-GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF-PTKYVQFPVF-IA 236 (346)
Q Consensus 160 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~ 236 (346)
+|-.-..|.... .....|..+.|++ ++..|+..-.|. |.+|-..+..-.++....+....... ..-....+.. .+
T Consensus 289 NGLrhgeF~l~~~~~~~~v~~l~Wn~-ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v 366 (928)
T PF04762_consen 289 NGLRHGEFTLRFDPEEEKVIELAWNS-DSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHV 366 (928)
T ss_pred CCcEeeeEecCCCCCCceeeEEEECC-CCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEE
Confidence 454444443221 3467899999998 889888877554 99999988555444443332221110 0000001111 11
Q ss_pred eecccceEEEEec-----C------C-EEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcc
Q 019117 237 SVHSNYVDCNRWL-----G------D-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN 304 (346)
Q Consensus 237 ~~~~~~i~~~~~~-----~------~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 304 (346)
....+.+....|. + + -.+..-...++++-.++..... .+.....+.. ..+|..++|++++ .
T Consensus 367 ~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VP----PPMs~~~l~~-~~~v~~vaf~~~~--~ 439 (928)
T PF04762_consen 367 LTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVP----PPMSSYELEL-PSPVNDVAFSPSN--S 439 (928)
T ss_pred EecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCC----chHhceEEcC-CCCcEEEEEeCCC--C
Confidence 1111223222221 1 0 1111122223444444443311 1112223333 3589999999998 4
Q ss_pred eEEEEcCCCcEEEEEcCCC
Q 019117 305 AAAIGNREGKIFVWELQSS 323 (346)
Q Consensus 305 ~l~~~~~dg~i~iwd~~~~ 323 (346)
.+++-..||.|.+|.....
T Consensus 440 ~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 440 RFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred eEEEEECCCCEEEEEecCC
Confidence 5888999999999986543
No 297
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.01 E-value=2.1e-06 Score=79.68 Aligned_cols=269 Identities=14% Similarity=0.182 Sum_probs=157.5
Q ss_pred CceEEEEEEeecCCCccEEEEEcCCc---EEEEEeccCceeeeEeeeecC---CCccceEEEEEEEcCCCCcEEEEeecC
Q 019117 34 RPLYAVVFNFIDSRYFNVFATVGGNR---VTVYQCLEGGVIAALQSYVDE---DKEESFYTVSWACNVDGIPFLVAGGIN 107 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~~~~~---v~i~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~l~~~~~d 107 (346)
..+...+|.+.. +.-+++.+.... |.+-..........+..+... .....|..+.+. ++.. .++.+..+
T Consensus 22 ~~~~~~~~d~~s--d~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl--~d~~-~l~~~~~~ 96 (928)
T PF04762_consen 22 LPITATAFDSDS--DSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYL--ADSE-SLCIALAS 96 (928)
T ss_pred cccceEEEecCC--CeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEec--cCCC-cEEEEECC
Confidence 456777777622 233444443333 344443333323333333211 234556555554 7776 78888889
Q ss_pred CeEEEE----EccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeE-------------------
Q 019117 108 GIIRVI----DVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI------------------- 164 (346)
Q Consensus 108 g~i~iw----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------------------- 164 (346)
|.|.+. +..+.. +...-.-...|.+++|+| ++..|+..+.++++.+.+-. ..++
T Consensus 97 Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSP-D~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVG 173 (928)
T PF04762_consen 97 GDIILVREDPDPDEDE-IEIVGSVDSGILAASWSP-DEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVG 173 (928)
T ss_pred ceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECC-CcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeec
Confidence 999999 544332 222222456899999999 88888888888888776422 2111
Q ss_pred -----EEecccCC---------------------CCcceEEEEecCCCCcEEEEEec---C---CeEEEEEccccceeee
Q 019117 165 -----LIFAGAGG---------------------HRNEVLSVDFHPSDIYRIASCGM---D---NTVKIWSMKEFWTYVE 212 (346)
Q Consensus 165 -----~~~~~~~~---------------------~~~~v~~~~~~~~~~~~l~s~~~---d---~~i~iwd~~~~~~~~~ 212 (346)
..|....+ ....-..++|-. ||.++++.+. . +.+++|+-...
T Consensus 174 WGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~ReG~----- 247 (928)
T PF04762_consen 174 WGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG-DGEYFAVSSVEPETGSRRVIRVYSREGE----- 247 (928)
T ss_pred cCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC-CCcEEEEEEEEcCCCceeEEEEECCCce-----
Confidence 11111000 112345688987 8888888764 2 47899987641
Q ss_pred eceeecCCCCCCCCccceeceEEE-eecccceEEEEec--CCEEEEEee---cCeEEEEcCCCCCCCCCCcccccccccc
Q 019117 213 KSFTWTDLPSKFPTKYVQFPVFIA-SVHSNYVDCNRWL--GDFILSKSV---DNEIVLWEPKMKEQSPGEGTADILQKYP 286 (346)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 286 (346)
+... ..-.+--.+++|. |+++|+... ...|.+|.-+..+ +.+..-.+.
T Consensus 248 --------------------L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr------hgeF~l~~~ 301 (928)
T PF04762_consen 248 --------------------LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR------HGEFTLRFD 301 (928)
T ss_pred --------------------EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE------eeeEecCCC
Confidence 1111 1111112356775 888888765 4567788766554 222223333
Q ss_pred CCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee----eeEEEEEecCCCC
Q 019117 287 VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI----CFSLHVKYNPQSV 345 (346)
Q Consensus 287 ~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~spdg~ 345 (346)
.....|..+.|++|+ .+||..-.|. |.+|-..+..-.....+. ..+..+.|+|.-+
T Consensus 302 ~~~~~v~~l~Wn~ds--~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p 361 (928)
T PF04762_consen 302 PEEEKVIELAWNSDS--EILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKP 361 (928)
T ss_pred CCCceeeEEEECCCC--CEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCC
Confidence 345688999999999 6888877655 999999887644444333 1234488988644
No 298
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.96 E-value=9.6e-07 Score=83.39 Aligned_cols=216 Identities=14% Similarity=0.079 Sum_probs=125.3
Q ss_pred eEEEEEEeecCCCccEEEEEcC-Cc-EEEEEeccCceeeeEeeeec-----CCC-------ccceEEEEEEEcCCCCcEE
Q 019117 36 LYAVVFNFIDSRYFNVFATVGG-NR-VTVYQCLEGGVIAALQSYVD-----EDK-------EESFYTVSWACNVDGIPFL 101 (346)
Q Consensus 36 v~~~~~~p~~~~~~~~la~~~~-~~-v~i~~~~~~~~~~~~~~~~~-----~~~-------~~~v~~~~~~~~~~~~~~l 101 (346)
...|++.+ ++..|.++.. ++ |+++|..++. +..+..... ... -.....+++. |++..++
T Consensus 626 P~GIavd~----~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~d--p~~g~Ly 698 (1057)
T PLN02919 626 PQGLAYNA----KKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFE--PVNEKVY 698 (1057)
T ss_pred CcEEEEeC----CCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEe--cCCCeEE
Confidence 56788887 4555544443 33 9999976543 333321100 000 0122345554 7443277
Q ss_pred EEeecCCeEEEEEccCcceeeeecc---------------CCCceEEEEEeCCCCc-eEEEeeCCCCEEEEecCCCeeEE
Q 019117 102 VAGGINGIIRVIDVSNEKLHKSFVG---------------HGDSINEIRTQPLKPS-LVVSASKDESVRLWNVQTGICIL 165 (346)
Q Consensus 102 ~~~~~dg~i~iwd~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~ 165 (346)
++...++.|++||..++... .+.+ .-.....|+++| ++. ++++-+.++.|++||+.++....
T Consensus 699 Vad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~ 776 (1057)
T PLN02919 699 IAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRL 776 (1057)
T ss_pred EEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEE
Confidence 77778899999998776532 1111 012356799999 555 66677778999999998765321
Q ss_pred Eecc----------cC--------CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCc
Q 019117 166 IFAG----------AG--------GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK 227 (346)
Q Consensus 166 ~~~~----------~~--------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 227 (346)
.... .. ..-....++++++ ++.++++-..++.|++||..+........ .+... +.
T Consensus 777 ~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG---~G~~G-~~-- 849 (1057)
T PLN02919 777 LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAG---TGKAG-FK-- 849 (1057)
T ss_pred EEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEec---cCCcC-CC--
Confidence 1100 00 0112346899998 78888888889999999997633211100 00000 00
Q ss_pred cceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCC
Q 019117 228 YVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKE 271 (346)
Q Consensus 228 ~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~ 271 (346)
... .....-.....++++ |+++++-+.+++|++||+.+++
T Consensus 850 -dG~---~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 850 -DGK---ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred -CCc---ccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 000 011122344566666 7888888889999999998865
No 299
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.96 E-value=2.9e-08 Score=86.88 Aligned_cols=175 Identities=12% Similarity=0.147 Sum_probs=128.2
Q ss_pred CCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEE
Q 019117 57 GNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRT 136 (346)
Q Consensus 57 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 136 (346)
.+.+..+|+.+.+..+.... ....+..++ .+++ ++.+|...|+|.+-|.++.+.+.++..|++.|.++..
T Consensus 156 Q~~li~~Dl~~~~e~r~~~v-----~a~~v~imR----~Nnr-~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv 225 (1118)
T KOG1275|consen 156 QEKLIHIDLNTEKETRTTNV-----SASGVTIMR----YNNR-NLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV 225 (1118)
T ss_pred hhheeeeecccceeeeeeec-----cCCceEEEE----ecCc-EEEeecccceEEeecCCcCceeeeeeccccceeeeec
Confidence 34477788777665554432 222243333 4567 9999999999999999999999999999999999877
Q ss_pred eCCCCceEEEeeCC---------CCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEcccc
Q 019117 137 QPLKPSLVVSASKD---------ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF 207 (346)
Q Consensus 137 ~~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 207 (346)
.+++|++++.. .-|+|||++..+.+..+. ......-+.|+|.=...++.++..|...+-|....
T Consensus 226 ---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~----~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 226 ---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ----FPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATL 298 (1118)
T ss_pred ---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcc----cccCchhhhhcccccceEEEEecccceeecccccc
Confidence 46888888764 457999999888877775 33334668899966778888999999999985442
Q ss_pred ceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcC
Q 019117 208 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEP 267 (346)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~ 267 (346)
... ...+.........+..+.++ ++.++.+..+|.|.+|.-
T Consensus 299 sNP-------------------~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 299 SNP-------------------PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CCC-------------------ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 110 11233333444557777777 899999999999999983
No 300
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.96 E-value=2.7e-08 Score=87.13 Aligned_cols=180 Identities=17% Similarity=0.234 Sum_probs=130.3
Q ss_pred EEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEE
Q 019117 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS 179 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 179 (346)
.++.|+....+..+|+++.+..+...-....|.-++. ++..+.+|...|+|.+-|.++.+.++++. +|.+.|..
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~---aHs~siSD 222 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFD---AHSGSISD 222 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeee---ccccceee
Confidence 6777777778889999998887776655545666665 56899999999999999999999999999 89999988
Q ss_pred EEecCCCCcEEEEEec---------CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-
Q 019117 180 VDFHPSDIYRIASCGM---------DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL- 249 (346)
Q Consensus 180 ~~~~~~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 249 (346)
+.. .|++|++||. |..|++||+|..+..... ..+-++ .-+.|.
T Consensus 223 fDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI-----------------------~~~~~P-~flrf~P 275 (1118)
T KOG1275|consen 223 FDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI-----------------------QFPYGP-QFLRFHP 275 (1118)
T ss_pred eec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCc-----------------------ccccCc-hhhhhcc
Confidence 876 4677888764 567899999995432211 111111 222333
Q ss_pred --CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117 250 --GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (346)
Q Consensus 250 --~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd 319 (346)
...+++++..|...+-|..+....+ ..+.-+......+..+++|+++ ..++.|..+|.|.+|.
T Consensus 276 sl~t~~~V~S~sGq~q~vd~~~lsNP~-----~~~~~v~p~~s~i~~fDiSsn~--~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 276 SLTTRLAVTSQSGQFQFVDTATLSNPP-----AGVKMVNPNGSGISAFDISSNG--DALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccceEEEEecccceeeccccccCCCc-----cceeEEccCCCcceeEEecCCC--ceEEEecccCcEeeec
Confidence 5678888999999999954432110 0111122223348999999999 7999999999999998
No 301
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.95 E-value=3.4e-09 Score=57.18 Aligned_cols=39 Identities=36% Similarity=0.681 Sum_probs=36.4
Q ss_pred cceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEe
Q 019117 118 EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 157 (346)
Q Consensus 118 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 157 (346)
++++.++.+|.+.|.+++|+| ++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 367889999999999999999 899999999999999997
No 302
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=1.1e-07 Score=82.20 Aligned_cols=182 Identities=15% Similarity=0.195 Sum_probs=128.1
Q ss_pred CCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcc
Q 019117 97 GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE 176 (346)
Q Consensus 97 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 176 (346)
++ +|+-|..+|.|++++.. +.. .+...|+.. .. ++.++++|+.||+|.|-.+-+.+....+. ...+
T Consensus 49 ~~-~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~~~~~~d----f~rp 114 (846)
T KOG2066|consen 49 DK-FFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDDEITQYD----FKRP 114 (846)
T ss_pred cc-eeeeccccceEEEEecC-Ccc-ccccccccc------cc-CCceEEEecCCCcEEEeeccCCccceeEe----cCCc
Confidence 44 99999999999999965 343 444445444 33 78999999999999999999888887775 7789
Q ss_pred eEEEEecCC----CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCE
Q 019117 177 VLSVDFHPS----DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDF 252 (346)
Q Consensus 177 v~~~~~~~~----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 252 (346)
+.+++++|+ ..+.+++||..| +.++.-+-... .....+..-.+.|.++.|.|++
T Consensus 115 iksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn---------------------k~~v~l~~~eG~I~~i~W~g~l 172 (846)
T KOG2066|consen 115 IKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN---------------------KDSVVLSEGEGPIHSIKWRGNL 172 (846)
T ss_pred ceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC---------------------ccceeeecCccceEEEEecCcE
Confidence 999999993 257899999988 76665433211 1111455667889999999999
Q ss_pred EEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117 253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (346)
Q Consensus 253 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~ 322 (346)
+|=++.+| |++||..+.+......... ....++.-...+.|.++. .|+.| ...+|+|..++.
T Consensus 173 IAWand~G-v~vyd~~~~~~l~~i~~p~---~~~R~e~fpphl~W~~~~---~LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 173 IAWANDDG-VKVYDTPTRQRLTNIPPPS---QSVRPELFPPHLHWQDED---RLVIG-WGDSVKICSIKK 234 (846)
T ss_pred EEEecCCC-cEEEeccccceeeccCCCC---CCCCcccCCCceEecCCC---eEEEe-cCCeEEEEEEec
Confidence 99998887 8999999877432222111 111122234557788776 45544 334788888873
No 303
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.93 E-value=1e-05 Score=64.11 Aligned_cols=217 Identities=13% Similarity=0.095 Sum_probs=134.1
Q ss_pred EEEEEcC-CCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEe
Q 019117 89 VSWACNV-DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF 167 (346)
Q Consensus 89 ~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 167 (346)
..|. + ++. ++++-...+.|..|+..+++... +... . ...+++...+ ..|+.+.. +.+.++|+.+++.....
T Consensus 5 p~~d--~~~g~-l~~~D~~~~~i~~~~~~~~~~~~-~~~~-~-~~G~~~~~~~-g~l~v~~~-~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 5 PVWD--PRDGR-LYWVDIPGGRIYRVDPDTGEVEV-IDLP-G-PNGMAFDRPD-GRLYVADS-GGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEE--TTTTE-EEEEETTTTEEEEEETTTTEEEE-EESS-S-EEEEEEECTT-SEEEEEET-TCEEEEETTTTEEEEEE
T ss_pred eEEE--CCCCE-EEEEEcCCCEEEEEECCCCeEEE-EecC-C-CceEEEEccC-CEEEEEEc-CceEEEecCCCcEEEEe
Confidence 4554 6 555 77777788999999988776533 2212 2 6777888315 45555555 44666699888655444
Q ss_pred ccc-CC-CCcceEEEEecCCCCcEEEEEecC--------CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe
Q 019117 168 AGA-GG-HRNEVLSVDFHPSDIYRIASCGMD--------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 237 (346)
Q Consensus 168 ~~~-~~-~~~~v~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (346)
... .. .....+.+++.| ++++.++.... |.|..++... .+....
T Consensus 77 ~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~~-------------------------~~~~~~ 130 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPDG-------------------------KVTVVA 130 (246)
T ss_dssp EEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETTS-------------------------EEEEEE
T ss_pred eccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCCC-------------------------eEEEEe
Confidence 421 12 456788999999 88877776543 4466666552 112222
Q ss_pred ecccceEEEEec--CCEE-EEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCc
Q 019117 238 VHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK 314 (346)
Q Consensus 238 ~~~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~ 314 (346)
..-.....++|+ ++.| ++-+..+.|..+++....... ........+....+..-.+++..+| ++.++....+.
T Consensus 131 ~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~g~pDG~~vD~~G--~l~va~~~~~~ 206 (246)
T PF08450_consen 131 DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGEL--SNRRVFIDFPGGPGYPDGLAVDSDG--NLWVADWGGGR 206 (246)
T ss_dssp EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCE--EEEEEEEE-SSSSCEEEEEEEBTTS---EEEEEETTTE
T ss_pred cCcccccceEECCcchheeecccccceeEEEeccccccce--eeeeeEEEcCCCCcCCCcceEcCCC--CEEEEEcCCCE
Confidence 234445778888 6655 466778889999986433100 0011222223223347789999988 67777667889
Q ss_pred EEEEEcCCCCcceeeeee-eeEEEEEec-CCC
Q 019117 315 IFVWELQSSPPVLIARLI-CFSLHVKYN-PQS 344 (346)
Q Consensus 315 i~iwd~~~~~~~~~~~~~-~~~~~~~~s-pdg 344 (346)
|.+++.. |+.+..+.++ ..+++++|. |+.
T Consensus 207 I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~ 237 (246)
T PF08450_consen 207 IVVFDPD-GKLLREIELPVPRPTNCAFGGPDG 237 (246)
T ss_dssp EEEEETT-SCEEEEEE-SSSSEEEEEEESTTS
T ss_pred EEEECCC-ccEEEEEcCCCCCEEEEEEECCCC
Confidence 9999987 8877777777 568899994 553
No 304
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.1e-07 Score=75.69 Aligned_cols=259 Identities=12% Similarity=0.191 Sum_probs=142.0
Q ss_pred cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (346)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (346)
..++..+.+.+|...|.+++|||.+ ..++..++-+. |.|.|+.+...+..+.. ...+++++|. .+..+
T Consensus 181 ~~fkssq~lp~~g~~IrdlafSp~~---~GLl~~asl~nkiki~dlet~~~vssy~a------~~~~wSC~wD--lde~h 249 (463)
T KOG1645|consen 181 HDFKSSQILPGEGSFIRDLAFSPFN---EGLLGLASLGNKIKIMDLETSCVVSSYIA------YNQIWSCCWD--LDERH 249 (463)
T ss_pred CCcchhhcccccchhhhhhccCccc---cceeeeeccCceEEEEecccceeeeheec------cCCceeeeec--cCCcc
Confidence 3455556678899999999999932 23677777777 99999998877666653 3678889998 55566
Q ss_pred EEEEeecCCeEEEEEccCcc-eeeeecc--CCCceEEEEEeCC-----CCceEEEeeCCCCEEEEecCCC----eeEEEe
Q 019117 100 FLVAGGINGIIRVIDVSNEK-LHKSFVG--HGDSINEIRTQPL-----KPSLVVSASKDESVRLWNVQTG----ICILIF 167 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~-~~~~~~~--~~~~v~~~~~~~~-----~~~~l~s~~~d~~i~iwd~~~~----~~~~~~ 167 (346)
+|..|..+|.|.|||++..+ .+..+.+ ...+|..++.-+- .+.+++..+.+ +..|++... .++..+
T Consensus 250 ~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel 327 (463)
T KOG1645|consen 250 VIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL 327 (463)
T ss_pred eeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccccc
Confidence 99999999999999997654 2222222 2234444443321 23444444433 556665422 122222
Q ss_pred cccCCCCcceEEEEecCCCCcEEEEEecCC------eEEEE-EccccceeeeeceeecCCCCCCCCccceeceEEEeecc
Q 019117 168 AGAGGHRNEVLSVDFHPSDIYRIASCGMDN------TVKIW-SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240 (346)
Q Consensus 168 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~------~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (346)
+..+.+.++..++.....|++.-.+. .|... |-+.+-.-... .+..+ + ......+.
T Consensus 328 ----e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~------r~~~~-----G--s~~~kl~t 390 (463)
T KOG1645|consen 328 ----EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGK------RRTYF-----G--SKQTKLST 390 (463)
T ss_pred ----CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeee------ccccc-----C--Cccccccc
Confidence 35667778888773344455443321 11110 00000000000 00000 0 00000111
Q ss_pred c-ceEEEEecCCE-EEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117 241 N-YVDCNRWLGDF-ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (346)
Q Consensus 241 ~-~i~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw 318 (346)
. .+.... ..++ +..++..+.+.+||+.+.+ .++++... .+|..++...-....+|+.-. |..++||
T Consensus 391 ~~ai~~~~-~nn~iv~~gd~tn~lil~D~~s~e---------vvQ~l~~~-epv~Dicp~~~n~~syLa~LT-d~~v~Iy 458 (463)
T KOG1645|consen 391 TQAIRAVE-DNNYIVVVGDSTNELILQDPHSFE---------VVQTLALS-EPVLDICPNDTNGSSYLALLT-DDRVHIY 458 (463)
T ss_pred ccceeccc-cccEEEEecCCcceeEEeccchhh---------eeeecccC-cceeecceeecCCcchhhhee-cceEEEE
Confidence 1 111110 0233 4445567889999999887 56666554 467776655543335666655 4578887
Q ss_pred EcC
Q 019117 319 ELQ 321 (346)
Q Consensus 319 d~~ 321 (346)
..+
T Consensus 459 k~e 461 (463)
T KOG1645|consen 459 KNE 461 (463)
T ss_pred ecC
Confidence 654
No 305
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.89 E-value=1.1e-09 Score=92.02 Aligned_cols=203 Identities=16% Similarity=0.182 Sum_probs=134.9
Q ss_pred cceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcce--eeeeccCCCceEEEEEeCCCCceEEEee----CCCCEEEEe
Q 019117 84 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSAS----KDESVRLWN 157 (346)
Q Consensus 84 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~----~d~~i~iwd 157 (346)
..+.|+++..+.+.. +++.|..+|.|.+-.++...- ....++|....++++|++.+.+.||+|- .|..+.|||
T Consensus 57 qy~kcva~~y~~d~c-IlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRC-ILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCceeehhhcCCchh-hhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 445667776665544 899999999999988765432 3445678889999999997778888874 366899999
Q ss_pred cCCC--eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEE
Q 019117 158 VQTG--ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 235 (346)
Q Consensus 158 ~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (346)
+.++ .+.....-..+......+++|.. +..++++|...+.+.++|++... ...
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~------------------------~~~ 190 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSL------------------------DSV 190 (783)
T ss_pred cccccCCCccccccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhh------------------------hhh
Confidence 9876 22222111112334556888985 88999999998999999999511 111
Q ss_pred EeecccceEEEEe---cCCEEEEEeecCeEEEEc-CCCCCCCCCCccccccccccCCC----cCeeEEEEeecCCcceEE
Q 019117 236 ASVHSNYVDCNRW---LGDFILSKSVDNEIVLWE-PKMKEQSPGEGTADILQKYPVPE----CDIWFIKFSCDFHYNAAA 307 (346)
Q Consensus 236 ~~~~~~~i~~~~~---~~~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~~~l~ 307 (346)
....+..+..+.. +++++++-. ||.|.+|| .+.-+. ++..+.... ..+..++|+|-..+ .++
T Consensus 191 ~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnien--------pl~~i~~~~N~~~~~l~~~aycPtrtg-lla 260 (783)
T KOG1008|consen 191 SSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIEN--------PLQIILRNENKKPKQLFALAYCPTRTG-LLA 260 (783)
T ss_pred hhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhcc--------HHHHHhhCCCCcccceeeEEeccCCcc-hhh
Confidence 1122223333333 378888776 99999999 433321 333322222 25889999998753 566
Q ss_pred EEc-CCCcEEEEEcCC
Q 019117 308 IGN-REGKIFVWELQS 322 (346)
Q Consensus 308 ~~~-~dg~i~iwd~~~ 322 (346)
+.+ ..+.|+++|+..
T Consensus 261 ~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 261 VLSRDSITIRLYDICV 276 (783)
T ss_pred hhccCcceEEEecccc
Confidence 655 456899998854
No 306
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.88 E-value=6.5e-06 Score=65.05 Aligned_cols=235 Identities=16% Similarity=0.188 Sum_probs=143.8
Q ss_pred EEEEEeecCCCccEEEEEcCCc--EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee-----cCCeE
Q 019117 38 AVVFNFIDSRYFNVFATVGGNR--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG-----INGII 110 (346)
Q Consensus 38 ~~~~~p~~~~~~~~la~~~~~~--v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~-----~dg~i 110 (346)
.++.+|. ....+|.+-.-+ ..+||..+++....+..- .+...+.-. .|++||+ +|++.- ..|.|
T Consensus 9 ~~a~~p~---~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~----~gRHFyGHg-~fs~dG~-~LytTEnd~~~g~G~I 79 (305)
T PF07433_consen 9 GVAAHPT---RPEAVAFARRPGTFALVFDCRTGQLLQRLWAP----PGRHFYGHG-VFSPDGR-LLYTTENDYETGRGVI 79 (305)
T ss_pred ceeeCCC---CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC----CCCEEecCE-EEcCCCC-EEEEeccccCCCcEEE
Confidence 5677773 356777777766 999999999887766531 222222222 3669999 777763 35899
Q ss_pred EEEEcc-CcceeeeeccCCCceEEEEEeCCCCceEEEeeC------------------CCCEEEEecCCCeeEEEeccc-
Q 019117 111 RVIDVS-NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK------------------DESVRLWNVQTGICILIFAGA- 170 (346)
Q Consensus 111 ~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~------------------d~~i~iwd~~~~~~~~~~~~~- 170 (346)
-|||.. +.+.+..+..|.-.-..+.+.| ++..|+.+.. +-.+...|..+|+.+......
T Consensus 80 gVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~ 158 (305)
T PF07433_consen 80 GVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP 158 (305)
T ss_pred EEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc
Confidence 999998 6677888888877788899999 6655555421 223556677778877764421
Q ss_pred CCCCcceEEEEecCCCCcEEEEEecCC-------eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce
Q 019117 171 GGHRNEVLSVDFHPSDIYRIASCGMDN-------TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV 243 (346)
Q Consensus 171 ~~~~~~v~~~~~~~~~~~~l~s~~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 243 (346)
..|.-.|+.+++.+ ++..++..-..| -|-+++..... .....+......-..++
T Consensus 159 ~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~------------------~~~~~p~~~~~~l~~Y~ 219 (305)
T PF07433_consen 159 DLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGGAL------------------RLLPAPEEQWRRLNGYI 219 (305)
T ss_pred cccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCCcc------------------eeccCChHHHHhhCCce
Confidence 14677899999997 666555543332 12222222200 00000111112234678
Q ss_pred EEEEec--CCEE-EEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEE
Q 019117 244 DCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 316 (346)
Q Consensus 244 ~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~ 316 (346)
-+|+++ +..+ +|+-..+.+.+||..+++ .+...... .+..++-.+++ ++++.+. |.+.
T Consensus 220 gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~---------~~~~~~l~--D~cGva~~~~~---f~~ssG~-G~~~ 280 (305)
T PF07433_consen 220 GSIAADRDGRLIAVTSPRGGRVAVWDAATGR---------LLGSVPLP--DACGVAPTDDG---FLVSSGQ-GQLI 280 (305)
T ss_pred EEEEEeCCCCEEEEECCCCCEEEEEECCCCC---------EeeccccC--ceeeeeecCCc---eEEeCCC-ccEE
Confidence 899997 4444 666678999999999887 34333322 44555555554 5555544 5443
No 307
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.85 E-value=1.6e-08 Score=54.43 Aligned_cols=39 Identities=33% Similarity=0.714 Sum_probs=35.6
Q ss_pred CeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEE
Q 019117 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 203 (346)
Q Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 203 (346)
++++..+. +|.+.|++++|+| ++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~---~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFR---GHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEE---SSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEc---CCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 35677888 8999999999999 899999999999999997
No 308
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.82 E-value=2.2e-06 Score=72.85 Aligned_cols=193 Identities=9% Similarity=-0.037 Sum_probs=108.1
Q ss_pred CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCc-eEEEeeC---CCCEEEEecCCCeeEEEecccCCCCcceEEEEec
Q 019117 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS-LVVSASK---DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 183 (346)
Q Consensus 108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 183 (346)
..|.+-|.+.... +.+... +....-.|+| +++ .++..+. +..|.++|+.+++...... ..+......|+
T Consensus 169 ~~l~~~d~dg~~~-~~~~~~-~~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~----~~g~~~~~~~S 241 (419)
T PRK04043 169 SNIVLADYTLTYQ-KVIVKG-GLNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS----SQGMLVVSDVS 241 (419)
T ss_pred ceEEEECCCCCce-eEEccC-CCeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec----CCCcEEeeEEC
Confidence 4566666544433 323323 3778999999 665 3554333 3568999998887655443 44556677899
Q ss_pred CCCCcEEEEEecCC--eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEee-
Q 019117 184 PSDIYRIASCGMDN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV- 258 (346)
Q Consensus 184 ~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~- 258 (346)
|++..++++.+.++ .|.++|+.... ...+..+........|+ |+.|+-.+.
T Consensus 242 PDG~~la~~~~~~g~~~Iy~~dl~~g~------------------------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr 297 (419)
T PRK04043 242 KDGSKLLLTMAPKGQPDIYLYDTNTKT------------------------LTQITNYPGIDVNGNFVEDDKRIVFVSDR 297 (419)
T ss_pred CCCCEEEEEEccCCCcEEEEEECCCCc------------------------EEEcccCCCccCccEECCCCCEEEEEECC
Confidence 93334555555444 56666765521 11222222212233565 665555543
Q ss_pred cC--eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC---------CcEEEEEcCCCCcce
Q 019117 259 DN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE---------GKIFVWELQSSPPVL 327 (346)
Q Consensus 259 d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~ 327 (346)
.+ .|.+.|+.+++... + .+.+. ....|||||+ .|+..+.. ..|.+.|+.+++...
T Consensus 298 ~g~~~Iy~~dl~~g~~~r-------l-t~~g~----~~~~~SPDG~--~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~ 363 (419)
T PRK04043 298 LGYPNIFMKKLNSGSVEQ-------V-VFHGK----NNSSVSTYKN--YIVYSSRETNNEFGKNTFNLYLISTNSDYIRR 363 (419)
T ss_pred CCCceEEEEECCCCCeEe-------C-ccCCC----cCceECCCCC--EEEEEEcCCCcccCCCCcEEEEEECCCCCeEE
Confidence 33 57777887665211 1 11111 1238999995 44444332 368888998887543
Q ss_pred eeeeeeeEEEEEecCCCCC
Q 019117 328 IARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 328 ~~~~~~~~~~~~~spdg~~ 346 (346)
... .+......|+|||++
T Consensus 364 LT~-~~~~~~p~~SPDG~~ 381 (419)
T PRK04043 364 LTA-NGVNQFPRFSSDGGS 381 (419)
T ss_pred CCC-CCCcCCeEECCCCCE
Confidence 332 223345889999973
No 309
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=4.2e-07 Score=73.59 Aligned_cols=274 Identities=11% Similarity=0.026 Sum_probs=169.7
Q ss_pred cCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec-CC
Q 019117 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI-NG 108 (346)
Q Consensus 31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~-dg 108 (346)
-|.+.|+.+.-.. .+++.+++-|+ ++.|--..-..+..+..+. .|-..+.+++.+ .+|. ++.+.+. |.
T Consensus 7 mhrd~i~hv~~tk-----a~fiiqASlDGh~KFWkKs~isGvEfVKhFr--aHL~~I~sl~~S--~dg~-L~~Sv~d~Dh 76 (558)
T KOG0882|consen 7 MHRDVITHVFPTK-----AKFIIQASLDGHKKFWKKSRISGVEFVKHFR--AHLGVILSLAVS--YDGW-LFRSVEDPDH 76 (558)
T ss_pred cccceeeeEeeeh-----hheEEeeecchhhhhcCCCCccceeehhhhH--HHHHHHHhhhcc--ccce-eEeeccCccc
Confidence 4788888877664 58999999999 9999844324444443332 255666666665 7788 8888777 99
Q ss_pred eEEEEEccCcceeeeec--cCCCceEEEEEeCCCC--ceEEEeeCCCCEEEEecCCCe-eEEEecccCCCCcceEEEEec
Q 019117 109 IIRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKP--SLVVSASKDESVRLWNVQTGI-CILIFAGAGGHRNEVLSVDFH 183 (346)
Q Consensus 109 ~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~ 183 (346)
.++++|+.+-..+.-++ --.+.+. +..++.+. ..-++.-.++.+.++|-.... ....++. -|..+|..+.+.
T Consensus 77 s~KvfDvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk--lH~sPV~~i~y~ 153 (558)
T KOG0882|consen 77 SVKVFDVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK--LHFSPVKKIRYN 153 (558)
T ss_pred ceeEEEeeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecc--cccCceEEEEee
Confidence 99999987765442222 1223222 22333111 223334567899999976543 3333332 589999999999
Q ss_pred CCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCe
Q 019117 184 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNE 261 (346)
Q Consensus 184 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~ 261 (346)
+ .+..+++....|.|.-|.....-..+.....+. . .....+..+.-......++.|+ +..+.+-+.|..
T Consensus 154 q-a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~-------~-K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Drk 224 (558)
T KOG0882|consen 154 Q-AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFE-------L-KHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRK 224 (558)
T ss_pred c-cccceeeccccceeEeecCCCcccCcccccccc-------c-cccchhhcccccccCccceEEccccCcccccCcccE
Confidence 8 888899999999999998874110000000000 0 0011122333344556777777 889999999999
Q ss_pred EEEEcCCCCCCCCCCccc-----------------c------ccccccCCC-cCeeEEEEeecCCcceEEEEcCCCcEEE
Q 019117 262 IVLWEPKMKEQSPGEGTA-----------------D------ILQKYPVPE-CDIWFIKFSCDFHYNAAAIGNREGKIFV 317 (346)
Q Consensus 262 i~iwd~~~~~~~~~~~~~-----------------~------~~~~~~~~~-~~v~~~~~s~~~~~~~l~~~~~dg~i~i 317 (346)
|++++.++++........ + ..+.+..+. ..-+.+.|...+ ++|+.++.=| |++
T Consensus 225 VR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~--~flly~t~~g-ikv 301 (558)
T KOG0882|consen 225 VRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESG--NFLLYGTILG-IKV 301 (558)
T ss_pred EEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCC--CEEEeeccee-EEE
Confidence 999999998753221100 0 001111121 233456677777 7888888766 899
Q ss_pred EEcCCCCcceee
Q 019117 318 WELQSSPPVLIA 329 (346)
Q Consensus 318 wd~~~~~~~~~~ 329 (346)
.++.+++.+.++
T Consensus 302 in~~tn~v~ri~ 313 (558)
T KOG0882|consen 302 INLDTNTVVRIL 313 (558)
T ss_pred EEeecCeEEEEe
Confidence 999998765544
No 310
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.78 E-value=5.3e-06 Score=70.65 Aligned_cols=231 Identities=10% Similarity=0.023 Sum_probs=133.2
Q ss_pred EEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCC
Q 019117 51 VFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD 129 (346)
Q Consensus 51 ~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 129 (346)
.+..++.++ +..+|..+|+.+...... ..+.+--.. .++ .++.+..++.+..+|.++|+.+..+.....
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~------~~~~ssP~v--~~~--~v~v~~~~g~l~ald~~tG~~~W~~~~~~~ 191 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKVA------GEALSRPVV--SDG--LVLVHTSNGMLQALNESDGAVKWTVNLDVP 191 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccCC------CceecCCEE--ECC--EEEEECCCCEEEEEEccCCCEeeeecCCCC
Confidence 444455555 999999888877665421 111111111 133 567777899999999999998877753211
Q ss_pred ce-----EEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC-c---ceEEEEecC-CCCcEEEEEecCCeE
Q 019117 130 SI-----NEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR-N---EVLSVDFHP-SDIYRIASCGMDNTV 199 (346)
Q Consensus 130 ~v-----~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~---~v~~~~~~~-~~~~~l~s~~~d~~i 199 (346)
.. ..-... +..++.++.+|.+..+|..+|+.+.......... . ....+..+| -.+..++.++.+|.+
T Consensus 192 ~~~~~~~~sP~v~---~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l 268 (394)
T PRK11138 192 SLTLRGESAPATA---FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNL 268 (394)
T ss_pred cccccCCCCCEEE---CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeE
Confidence 10 011111 2356667788999999999998877654210000 0 011111112 013356667788999
Q ss_pred EEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCccc
Q 019117 200 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTA 279 (346)
Q Consensus 200 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 279 (346)
..+|+.+++...... . .....+...++.++.++.+|.+..+|..+++.......
T Consensus 269 ~ald~~tG~~~W~~~-----------------------~--~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~- 322 (394)
T PRK11138 269 VALDLRSGQIVWKRE-----------------------Y--GSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSD- 322 (394)
T ss_pred EEEECCCCCEEEeec-----------------------C--CCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccc-
Confidence 999998854322111 0 00111233477888888999999999988763211100
Q ss_pred cccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeee
Q 019117 280 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL 331 (346)
Q Consensus 280 ~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 331 (346)
.. .....+... .+ ..|+.++.||.|+..|..+|+.+...++
T Consensus 323 -----~~--~~~~~sp~v-~~---g~l~v~~~~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 323 -----LL--HRLLTAPVL-YN---GYLVVGDSEGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred -----cC--CCcccCCEE-EC---CEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 00 001111112 13 3678889999999999999987665554
No 311
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.77 E-value=1e-05 Score=68.82 Aligned_cols=190 Identities=9% Similarity=-0.017 Sum_probs=103.1
Q ss_pred EEEEcCCCCcEEEEeec---CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCc-eEEEeeCC--CCEEEEecCCCee
Q 019117 90 SWACNVDGIPFLVAGGI---NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS-LVVSASKD--ESVRLWNVQTGIC 163 (346)
Q Consensus 90 ~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d--~~i~iwd~~~~~~ 163 (346)
.-.++|+|+..++..+. +..|.++|+.+++...... ..+......|+| ++. ++++.+.+ ..|.++|+..++.
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~g~~ 269 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNTKTL 269 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEECCCCcE
Confidence 33445999732443332 3578999998887554433 455566788999 555 44455444 4677778877764
Q ss_pred EEEecccCCCCcceEEEEecCCCCcEEEEEecCC--eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc
Q 019117 164 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241 (346)
Q Consensus 164 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (346)
. .+. .+........|+|++..++++....+ .|.+.|+..... ..+.....
T Consensus 270 ~-~LT---~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~------------------------~rlt~~g~ 321 (419)
T PRK04043 270 T-QIT---NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV------------------------EQVVFHGK 321 (419)
T ss_pred E-Ecc---cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe------------------------EeCccCCC
Confidence 3 343 23333345679994334555554444 466666655221 00111111
Q ss_pred ceEEEEec--CCEEEEEeec---------CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc
Q 019117 242 YVDCNRWL--GDFILSKSVD---------NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN 310 (346)
Q Consensus 242 ~i~~~~~~--~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~ 310 (346)
. ...|+ |++++..+.. ..|.+.|+.++.. ..+... .......|+|||+ .++..+
T Consensus 322 ~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~----------~~LT~~-~~~~~p~~SPDG~--~I~f~~ 386 (419)
T PRK04043 322 N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI----------RRLTAN-GVNQFPRFSSDGG--SIMFIK 386 (419)
T ss_pred c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe----------EECCCC-CCcCCeEECCCCC--EEEEEE
Confidence 1 12454 7766665543 3678888877652 111111 1223478999995 443333
Q ss_pred -CCC--cEEEEEcCCCC
Q 019117 311 -REG--KIFVWELQSSP 324 (346)
Q Consensus 311 -~dg--~i~iwd~~~~~ 324 (346)
..+ .+.+.++....
T Consensus 387 ~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 387 YLGNQSALGIIRLNYNK 403 (419)
T ss_pred ccCCcEEEEEEecCCCe
Confidence 222 46677776544
No 312
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.74 E-value=9.1e-06 Score=64.12 Aligned_cols=183 Identities=13% Similarity=0.092 Sum_probs=110.7
Q ss_pred ccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeee-ccC
Q 019117 49 FNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF-VGH 127 (346)
Q Consensus 49 ~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~ 127 (346)
+.+++....+.+..||..+|+.+..... ... .... . . ..+. .++.+..++.+..+|..+|+.+... ...
T Consensus 37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~-~~~~---~-~---~~~~-~v~v~~~~~~l~~~d~~tG~~~W~~~~~~ 106 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKTGKVLWRFDL-PGP-ISGA---P-V---VDGG-RVYVGTSDGSLYALDAKTGKVLWSIYLTS 106 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSEEEEEEEC-SSC-GGSG---E-E---EETT-EEEEEETTSEEEEEETTTSCEEEEEEE-S
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEeec-ccc-ccce---e-e---eccc-ccccccceeeeEecccCCcceeeeecccc
Confidence 3444444455599999999988776653 111 1111 1 1 2233 5667777889999999999988874 322
Q ss_pred C---CceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC-cc------e-EEEEecCCCCcEEEEEecC
Q 019117 128 G---DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR-NE------V-LSVDFHPSDIYRIASCGMD 196 (346)
Q Consensus 128 ~---~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~------v-~~~~~~~~~~~~l~s~~~d 196 (346)
. .......... .+..++.+..++.|..+|+++|+.+.......... .. + ..+.+. ++ .++.++.+
T Consensus 107 ~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~ 182 (238)
T PF13360_consen 107 SPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS--DG-RVYVSSGD 182 (238)
T ss_dssp SCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC--TT-EEEEECCT
T ss_pred ccccccccccCceE-ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE--CC-EEEEEcCC
Confidence 1 1112222222 35678888889999999999999988887421111 11 1 233333 34 66666667
Q ss_pred Ce-EEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEE-EEecCCEEEEEeecCeEEEEcCCCCC
Q 019117 197 NT-VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC-NRWLGDFILSKSVDNEIVLWEPKMKE 271 (346)
Q Consensus 197 ~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~l~~~~~d~~i~iwd~~~~~ 271 (346)
+. +.+ |+.+.+. +.... ...+.. ....++.++.++.++.|..||+++++
T Consensus 183 g~~~~~-d~~tg~~-----------------------~w~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 183 GRVVAV-DLATGEK-----------------------LWSKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp SSEEEE-ETTTTEE-----------------------EEEEC--SS-ECECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred CeEEEE-ECCCCCE-----------------------EEEec--CCCccCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 75 555 8888431 21111 122222 33347888888899999999999986
No 313
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=1.2e-06 Score=76.16 Aligned_cols=187 Identities=12% Similarity=0.110 Sum_probs=123.1
Q ss_pred CCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 019117 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (346)
Q Consensus 33 ~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 111 (346)
.+.++|++++- ++|+-|.-+| |++++.... ....+. |... +.+|. ++++|+.||+|.
T Consensus 39 ~D~is~~av~~------~~~~~GtH~g~v~~~~~~~~-~~~~~~------~s~~--------~~~Ge-y~asCS~DGkv~ 96 (846)
T KOG2066|consen 39 NDAISCCAVHD------KFFALGTHRGAVYLTTCQGN-PKTNFD------HSSS--------ILEGE-YVASCSDDGKVV 96 (846)
T ss_pred hhHHHHHHhhc------ceeeeccccceEEEEecCCc-cccccc------cccc--------ccCCc-eEEEecCCCcEE
Confidence 46788899874 8999999888 999985433 222221 1111 46788 999999999999
Q ss_pred EEEccCcceeeeeccCCCceEEEEEeCC----CCceEEEeeCCCCEEEEecCC---CeeEEEecccCCCCcceEEEEecC
Q 019117 112 VIDVSNEKLHKSFVGHGDSINEIRTQPL----KPSLVVSASKDESVRLWNVQT---GICILIFAGAGGHRNEVLSVDFHP 184 (346)
Q Consensus 112 iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~ 184 (346)
|-.+.+.+...++. -..++.+|+++|+ ....+++|+.-| +.++.-+- ...+ .+. .-.++|.++.|.
T Consensus 97 I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~---~~eG~I~~i~W~- 169 (846)
T KOG2066|consen 97 IGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLS---EGEGPIHSIKWR- 169 (846)
T ss_pred EeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eee---cCccceEEEEec-
Confidence 99998888766665 4578999999993 256899999888 77765331 1111 232 457899999995
Q ss_pred CCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEE
Q 019117 185 SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVL 264 (346)
Q Consensus 185 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~i 264 (346)
+++++-++.+| |++||+...+........ . ........-..+.|..+..++-|+..+|+|
T Consensus 170 --g~lIAWand~G-v~vyd~~~~~~l~~i~~p----------------~-~~~R~e~fpphl~W~~~~~LVIGW~d~v~i 229 (846)
T KOG2066|consen 170 --GNLIAWANDDG-VKVYDTPTRQRLTNIPPP----------------S-QSVRPELFPPHLHWQDEDRLVIGWGDSVKI 229 (846)
T ss_pred --CcEEEEecCCC-cEEEeccccceeeccCCC----------------C-CCCCcccCCCceEecCCCeEEEecCCeEEE
Confidence 57777776554 899999884322111100 0 000001112345666444445567678999
Q ss_pred EcCC
Q 019117 265 WEPK 268 (346)
Q Consensus 265 wd~~ 268 (346)
..++
T Consensus 230 ~~I~ 233 (846)
T KOG2066|consen 230 CSIK 233 (846)
T ss_pred EEEe
Confidence 9988
No 314
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=6.6e-07 Score=71.47 Aligned_cols=96 Identities=15% Similarity=0.235 Sum_probs=82.2
Q ss_pred EEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcE
Q 019117 110 IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR 189 (346)
Q Consensus 110 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 189 (346)
+++.+..+-+....+..|...|.+++|+|.+..++..++.+.+|+|.|+++...+..+. .+ ..+.+++|.-++..+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~---a~-~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI---AY-NQIWSCCWDLDERHV 250 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee---cc-CCceeeeeccCCcce
Confidence 66666666666667788899999999999666689999999999999999999888887 34 899999999877889
Q ss_pred EEEEecCCeEEEEEccccce
Q 019117 190 IASCGMDNTVKIWSMKEFWT 209 (346)
Q Consensus 190 l~s~~~d~~i~iwd~~~~~~ 209 (346)
++.|...|.|.+||++....
T Consensus 251 IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred eEEeccCceEEEEEccCCCc
Confidence 99999999999999998544
No 315
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=1.3e-08 Score=88.93 Aligned_cols=165 Identities=14% Similarity=0.179 Sum_probs=114.9
Q ss_pred cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (346)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (346)
..|+....|..|...-+|++|+- ..+.|+.|+-.| |++|+..+|........ |+..++-+. ++.+|..
T Consensus 1089 SRFr~w~~frd~~~~fTc~afs~----~~~hL~vG~~~Geik~~nv~sG~~e~s~nc-----H~SavT~ve--Ps~dgs~ 1157 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDETALFTCIAFSG----GTNHLAVGSHAGEIKIFNVSSGSMEESVNC-----HQSAVTLVE--PSVDGST 1157 (1516)
T ss_pred hhcccchhhhccccceeeEEeec----CCceEEeeeccceEEEEEccCccccccccc-----ccccccccc--ccCCcce
Confidence 46777788899999999999997 568999998888 99999999988777765 666665554 4578873
Q ss_pred EEEEeecCC-eEEEEEccC-cceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEe-cccCCCCcc
Q 019117 100 FLVAGGING-IIRVIDVSN-EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF-AGAGGHRNE 176 (346)
Q Consensus 100 ~l~~~~~dg-~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~ 176 (346)
.|.+++... -..+|++.. +....++. .-.++.|+. ....-+.|..-....+||++++.++.++ ....+....
T Consensus 1158 ~Ltsss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~ 1232 (1516)
T KOG1832|consen 1158 QLTSSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYS 1232 (1516)
T ss_pred eeeeccccCchHHHhccccccCcccccc----ccceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhh
Confidence 444444443 577999854 33444443 346888987 4444444555556889999999887763 322223334
Q ss_pred eEEEEecCCCCcEEEEEecCCeEEEEEcccc
Q 019117 177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEF 207 (346)
Q Consensus 177 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 207 (346)
=++..|+| ...+++ .|| .+||++..
T Consensus 1233 ~n~a~FsP-~D~LIl---ndG--vLWDvR~~ 1257 (1516)
T KOG1832|consen 1233 NNLAHFSP-CDTLIL---NDG--VLWDVRIP 1257 (1516)
T ss_pred ccccccCC-CcceEe---eCc--eeeeeccH
Confidence 47888999 666665 344 57999983
No 316
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.69 E-value=1.7e-05 Score=60.98 Aligned_cols=166 Identities=13% Similarity=0.224 Sum_probs=103.7
Q ss_pred eEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeee--cCCCccceEEEEEEEcCCC---CcEEEEeecCCe
Q 019117 36 LYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYV--DEDKEESFYTVSWACNVDG---IPFLVAGGINGI 109 (346)
Q Consensus 36 v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~---~~~l~~~~~dg~ 109 (346)
=+.++||| |+.+||.+...+ |++||+..... ..+..-. ...-...|..+.|...... ...|++-..+|.
T Consensus 46 WRkl~WSp----D~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~ 120 (282)
T PF15492_consen 46 WRKLAWSP----DCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQ 120 (282)
T ss_pred heEEEECC----CCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccce
Confidence 45799999 889999998888 99999765333 2332211 0112345555555422111 114555566888
Q ss_pred EEEEEccCc-----ceeeee--c-cCCCceEEEEEeCCCCceEEEeeCC-C----------CEEEEecCCCeeEEE----
Q 019117 110 IRVIDVSNE-----KLHKSF--V-GHGDSINEIRTQPLKPSLVVSASKD-E----------SVRLWNVQTGICILI---- 166 (346)
Q Consensus 110 i~iwd~~~~-----~~~~~~--~-~~~~~v~~~~~~~~~~~~l~s~~~d-~----------~i~iwd~~~~~~~~~---- 166 (346)
++-|-+..+ +....+ . .+...|.++.++| ..++|+.|+.. . -+..|.+-++.+-..
T Consensus 121 L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~ 199 (282)
T PF15492_consen 121 LRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTS 199 (282)
T ss_pred eeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccc
Confidence 887776332 222232 2 2467899999999 77777766531 1 256676643321110
Q ss_pred ----------------------ecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccc
Q 019117 167 ----------------------FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208 (346)
Q Consensus 167 ----------------------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 208 (346)
+.........|..|..+| ++.+|++...+|.|.+|++.+.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 200 SEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP-DGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred cCccccccccccceeeccceeeeeccccCCCceEEEEECC-CCCEEEEEEcCCeEEEEecCcch
Confidence 000012456789999999 99999999999999999998844
No 317
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.69 E-value=8.5e-06 Score=63.38 Aligned_cols=207 Identities=8% Similarity=0.021 Sum_probs=112.4
Q ss_pred eeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEE
Q 019117 122 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI 201 (346)
Q Consensus 122 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i 201 (346)
+.+.+-...+..++|+|+++.++++....+.|...+. +|+.++.+.-. -.+..-.+++.. ++.++++.-.++.+.+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~--g~~D~EgI~y~g-~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLD--GFGDYEGITYLG-NGRYVLSEERDQRLYI 90 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-S--S-SSEEEEEE-S-TTEEEEEETTTTEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCC--CCCCceeEEEEC-CCEEEEEEcCCCcEEE
Confidence 3455666679999999966678888888888988886 48888887631 235677888875 6776776666899999
Q ss_pred EEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCC--CCCCCc
Q 019117 202 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKE--QSPGEG 277 (346)
Q Consensus 202 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~--~~~~~~ 277 (346)
+++........... .....+.....+...+-.++|+ ++.|+.+-...-..+|.++... ......
T Consensus 91 ~~~~~~~~~~~~~~------------~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~ 158 (248)
T PF06977_consen 91 FTIDDDTTSLDRAD------------VQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVS 158 (248)
T ss_dssp EEE----TT--EEE------------EEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred EEEeccccccchhh------------ceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeec
Confidence 99855211110000 0000111112355668899998 6677777777777777766411 000000
Q ss_pred cccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee----------eEEEEEecCCCCC
Q 019117 278 TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC----------FSLHVKYNPQSVY 346 (346)
Q Consensus 278 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------~~~~~~~spdg~~ 346 (346)
....+.........+.+++++|... .+++-......|..+| .+|+++....+.. ....|+|.|+|++
T Consensus 159 ~~~~~~~~~~~~~d~S~l~~~p~t~-~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~L 235 (248)
T PF06977_consen 159 DDQDLDDDKLFVRDLSGLSYDPRTG-HLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNL 235 (248)
T ss_dssp E-HHHH-HT--SS---EEEEETTTT-EEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--E
T ss_pred cccccccccceeccccceEEcCCCC-eEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCE
Confidence 0001111122345688999999765 5777788888999999 6677776666654 2567999999863
No 318
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.69 E-value=1.2e-05 Score=68.49 Aligned_cols=223 Identities=11% Similarity=0.064 Sum_probs=125.0
Q ss_pred EEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCC
Q 019117 51 VFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD 129 (346)
Q Consensus 51 ~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 129 (346)
.++.+..++ +..+|..+|+.+.................... .++ .++.++.+|.+..+|..+++.+........
T Consensus 162 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v---~~~--~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~ 236 (394)
T PRK11138 162 LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT---AFG--GAIVGGDNGRVSAVLMEQGQLIWQQRISQP 236 (394)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE---ECC--EEEEEcCCCEEEEEEccCChhhheeccccC
Confidence 344444444 99999988887766543110000000000111 123 466677789999999999987665431110
Q ss_pred -------ceEEEEEeCC-CCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEE
Q 019117 130 -------SINEIRTQPL-KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI 201 (346)
Q Consensus 130 -------~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i 201 (346)
....+.-+|. .+..++.++.+|.+..+|..+++.+..... .. ...+.. .+..++.++.+|.+..
T Consensus 237 ~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~----~~-~~~~~~---~~~~vy~~~~~g~l~a 308 (394)
T PRK11138 237 TGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY----GS-VNDFAV---DGGRIYLVDQNDRVYA 308 (394)
T ss_pred CCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC----CC-ccCcEE---ECCEEEEEcCCCeEEE
Confidence 0011111110 234666777889999999999988776541 11 112232 3445777778999999
Q ss_pred EEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCccccc
Q 019117 202 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADI 281 (346)
Q Consensus 202 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 281 (346)
+|..+++....... . ......+....+.+++.++.||.+.+.|..+++ .
T Consensus 309 ld~~tG~~~W~~~~--------------------~--~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~---------~ 357 (394)
T PRK11138 309 LDTRGGVELWSQSD--------------------L--LHRLLTAPVLYNGYLVVGDSEGYLHWINREDGR---------F 357 (394)
T ss_pred EECCCCcEEEcccc--------------------c--CCCcccCCEEECCEEEEEeCCCEEEEEECCCCC---------E
Confidence 99987432111100 0 000111122237788999999999999999887 3
Q ss_pred cccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117 282 LQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 320 (346)
Q Consensus 282 ~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~ 320 (346)
+.+.......+.+--.-.+ ..|+.++.||.|+.++.
T Consensus 358 ~~~~~~~~~~~~s~P~~~~---~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 358 VAQQKVDSSGFLSEPVVAD---DKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEEcCCCcceeCCEEEC---CEEEEEeCCceEEEEeC
Confidence 4333322222222111123 36888899999988764
No 319
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=1.2e-05 Score=70.79 Aligned_cols=202 Identities=13% Similarity=0.151 Sum_probs=130.3
Q ss_pred CCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCc-eEEEEEeCCCCceEEEeeCCCC-----EEEEecCCC------e
Q 019117 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDS-INEIRTQPLKPSLVVSASKDES-----VRLWNVQTG------I 162 (346)
Q Consensus 95 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~~d~~-----i~iwd~~~~------~ 162 (346)
+.+. .++.|+.+|.|.+.+ +.-+.++.++.+... |..+.... +.++|++.+.|+. |++|+++.. .
T Consensus 33 s~~~-~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~ 109 (933)
T KOG2114|consen 33 SSTG-SVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ 109 (933)
T ss_pred CCCc-eEEEeeccccEEEec-ccceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence 6666 899999999988887 344555777777766 55554444 5578888777654 899998632 2
Q ss_pred eE---EEeccc-CCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee
Q 019117 163 CI---LIFAGA-GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 238 (346)
Q Consensus 163 ~~---~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (346)
++ +.+... .....++.+++.+. +-..+++|-.+|.|..+.=+-.+. ..........
T Consensus 110 c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RD-------------------rgsr~~~~~~ 169 (933)
T KOG2114|consen 110 CLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRD-------------------RGSRQDYSHR 169 (933)
T ss_pred eeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhc-------------------cccceeeecc
Confidence 33 222211 12356788999996 788899999999998875332111 1111222233
Q ss_pred cccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEE
Q 019117 239 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 316 (346)
Q Consensus 239 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~ 316 (346)
-..+|+.+.+. +..++-+..-..|.+|.+.... ..+..+..+..++.|..|++... .+++++. ..+.
T Consensus 170 ~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~--------p~~~~ld~~G~~lnCss~~~~t~--qfIca~~-e~l~ 238 (933)
T KOG2114|consen 170 GKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT--------PSLKVLDNNGISLNCSSFSDGTY--QFICAGS-EFLY 238 (933)
T ss_pred CCCCceeeEEecCCceeEEEEecceeEEEEecCCC--------cceeeeccCCccceeeecCCCCc--cEEEecC-ceEE
Confidence 45679999997 5542333344579999988332 13445677788889999988763 2444443 4699
Q ss_pred EEEcCCCCcceeee
Q 019117 317 VWELQSSPPVLIAR 330 (346)
Q Consensus 317 iwd~~~~~~~~~~~ 330 (346)
+|+.....+...+.
T Consensus 239 fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 239 FYDSDGRGPCFAFE 252 (933)
T ss_pred EEcCCCcceeeeec
Confidence 99988766555444
No 320
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.66 E-value=2e-05 Score=66.73 Aligned_cols=88 Identities=17% Similarity=0.232 Sum_probs=69.3
Q ss_pred EEEEccCccee----eeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCC
Q 019117 111 RVIDVSNEKLH----KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD 186 (346)
Q Consensus 111 ~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 186 (346)
.+|+....+.. ..+ .....|.+++++| +...|+.|+.||+|.+||...+..... + ..-.++.++|+| +
T Consensus 239 ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t~~~-k----a~~~P~~iaWHp-~ 310 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSI-PLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGVTLLA-K----AEFIPTLIAWHP-D 310 (545)
T ss_pred EEEEeecCceeEEEEEEE-ecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCeeeee-e----ecccceEEEEcC-C
Confidence 45666544322 222 3677899999999 889999999999999999876643322 2 556788999999 9
Q ss_pred CcEEEEEecCCeEEEEEccc
Q 019117 187 IYRIASCGMDNTVKIWSMKE 206 (346)
Q Consensus 187 ~~~l~s~~~d~~i~iwd~~~ 206 (346)
+..+++|+..|.+.+||+.-
T Consensus 311 gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 311 GAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred CcEEEEEcCCceEEEEEeec
Confidence 99999999999999999986
No 321
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.62 E-value=6e-05 Score=69.06 Aligned_cols=206 Identities=13% Similarity=0.194 Sum_probs=125.7
Q ss_pred ccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEec----
Q 019117 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV---- 158 (346)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~---- 158 (346)
...|.++.|. .+.. .++.+...|.|.+-|..+..... .-.-...|.+++|+| ++..++..+..+++.+-+-
T Consensus 68 d~~i~s~~fl--~d~~-~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~ 142 (1265)
T KOG1920|consen 68 DDEIVSVQFL--ADTN-SICVITALGDIILVDPETLELEI-VGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEP 142 (1265)
T ss_pred CcceEEEEEe--cccc-eEEEEecCCcEEEEcccccceee-eeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccc
Confidence 3466555554 6666 78888889999999877655322 222456799999999 8888888887777765432
Q ss_pred CCCeeE-------------------EEecccCC---------C---------CcceEEEEecCCCCcEEEEE-----ecC
Q 019117 159 QTGICI-------------------LIFAGAGG---------H---------RNEVLSVDFHPSDIYRIASC-----GMD 196 (346)
Q Consensus 159 ~~~~~~-------------------~~~~~~~~---------~---------~~~v~~~~~~~~~~~~l~s~-----~~d 196 (346)
-..+++ ..|+...+ + .+.=+.+.|-- +|.++++. ...
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGT 221 (1265)
T ss_pred hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCc
Confidence 111111 11210000 0 11123588885 88888773 223
Q ss_pred CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe---ecCeEEEEcCCCCC
Q 019117 197 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS---VDNEIVLWEPKMKE 271 (346)
Q Consensus 197 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~---~d~~i~iwd~~~~~ 271 (346)
+.|++||-....... -......-.+++|. |..+++-. .|+.|.+|.-+..+
T Consensus 222 RkirV~drEg~Lns~------------------------se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~ 277 (1265)
T KOG1920|consen 222 RKIRVYDREGALNST------------------------SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR 277 (1265)
T ss_pred eeEEEecccchhhcc------------------------cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc
Confidence 789999987311000 00111122355665 66776653 46689999877655
Q ss_pred CCCCCccccccccccCCCcCeeEEEEeecCCcceEEE---EcCCCcEEEEEcCCCCcc
Q 019117 272 QSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI---GNREGKIFVWELQSSPPV 326 (346)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~---~~~dg~i~iwd~~~~~~~ 326 (346)
+.+..-.++.....+..++|+.++ .+|++ ......|++|-+.+..-.
T Consensus 278 ------hg~f~l~~p~de~~ve~L~Wns~s--diLAv~~~~~e~~~v~lwt~~NyhWY 327 (1265)
T KOG1920|consen 278 ------HGEFVLPFPLDEKEVEELAWNSNS--DILAVVTSNLENSLVQLWTTGNYHWY 327 (1265)
T ss_pred ------ccccccCCcccccchheeeecCCC--CceeeeecccccceEEEEEecCeEEE
Confidence 333344444455568999999999 67877 555556999999876543
No 322
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.59 E-value=5.8e-05 Score=64.25 Aligned_cols=232 Identities=15% Similarity=0.115 Sum_probs=111.4
Q ss_pred CCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 019117 32 GKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (346)
Q Consensus 32 h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 111 (346)
..-....+.++| +|+.+++++++.-.||..........- .+..+.+.+.+ .+|+-..++.|.
T Consensus 31 ~~~~p~~ls~np----ngr~v~V~g~geY~iyt~~~~r~k~~G------------~g~~~vw~~~n--~yAv~~~~~~I~ 92 (443)
T PF04053_consen 31 CEIYPQSLSHNP----NGRFVLVCGDGEYEIYTALAWRNKAFG------------SGLSFVWSSRN--RYAVLESSSTIK 92 (443)
T ss_dssp -SS--SEEEE-T----TSSEEEEEETTEEEEEETTTTEEEEEE------------E-SEEEE-TSS--EEEEE-TTS-EE
T ss_pred CCcCCeeEEECC----CCCEEEEEcCCEEEEEEccCCcccccC------------ceeEEEEecCc--cEEEEECCCeEE
Confidence 344577899999 789999988887777773222221111 11334444655 467777688999
Q ss_pred EEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEE
Q 019117 112 VIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA 191 (346)
Q Consensus 112 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 191 (346)
|+.--+.+....++. ...+..+- .+.+|...+.+ .|.+||+.+++.+..+. .. +|..+.|++ ++.+++
T Consensus 93 I~kn~~~~~~k~i~~-~~~~~~If----~G~LL~~~~~~-~i~~yDw~~~~~i~~i~----v~-~vk~V~Ws~-~g~~va 160 (443)
T PF04053_consen 93 IYKNFKNEVVKSIKL-PFSVEKIF----GGNLLGVKSSD-FICFYDWETGKLIRRID----VS-AVKYVIWSD-DGELVA 160 (443)
T ss_dssp EEETTEE-TT------SS-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEES----S--E-EEEEE-T-TSSEEE
T ss_pred EEEcCccccceEEcC-CcccceEE----cCcEEEEECCC-CEEEEEhhHcceeeEEe----cC-CCcEEEEEC-CCCEEE
Confidence 974333333334432 22344442 25677766654 79999999999999996 33 489999998 888888
Q ss_pred EEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCC
Q 019117 192 SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKE 271 (346)
Q Consensus 192 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 271 (346)
..+.+ .+.+++........ .+.............-...|.+..|.++.++-.+.. .++. +..++
T Consensus 161 l~t~~-~i~il~~~~~~~~~------------~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkY--l~~Ge 224 (443)
T PF04053_consen 161 LVTKD-SIYILKYNLEAVAA------------IPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKY--LVNGE 224 (443)
T ss_dssp EE-S--SEEEEEE-HHHHHH------------BTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEE--EETTE
T ss_pred EEeCC-eEEEEEecchhccc------------ccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEE--EEcCC
Confidence 87755 66666554410000 000001112333333366788888887655544444 5555 33332
Q ss_pred CCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117 272 QSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (346)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~ 321 (346)
...+..+ ..++.-+...+.. ..+.....|+.+..+.+.
T Consensus 225 -------~~~i~~l---d~~~yllgy~~~~--~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 225 -------TGIIAHL---DKPLYLLGYLPKE--NRLYLIDRDGNVISYELD 262 (443)
T ss_dssp -------EEEEEE----SS--EEEEEETTT--TEEEEE-TT--EEEEE--
T ss_pred -------cceEEEc---CCceEEEEEEccC--CEEEEEECCCCEEEEEEC
Confidence 0122222 2345555566644 456666666666666654
No 323
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.54 E-value=6.1e-05 Score=60.44 Aligned_cols=264 Identities=12% Similarity=0.033 Sum_probs=138.4
Q ss_pred EEEEeecCCCccEEEEEcC-----------CcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee--
Q 019117 39 VVFNFIDSRYFNVFATVGG-----------NRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG-- 105 (346)
Q Consensus 39 ~~~~p~~~~~~~~la~~~~-----------~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~-- 105 (346)
+..+| +++.++++.. |-|.+||..+......+.-...+......+.-.+..+.||+ +++...
T Consensus 41 ~~~sp----dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk-~~~V~N~T 115 (342)
T PF06433_consen 41 VALSP----DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGK-FLYVQNFT 115 (342)
T ss_dssp EEE-T----TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSS-EEEEEEES
T ss_pred eeECC----CCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCc-EEEEEccC
Confidence 55677 6777776542 22999999887776655432110000011111234458888 666653
Q ss_pred cCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecC-CCeeEEEecc-cCCCCcce-EEEEe
Q 019117 106 INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-TGICILIFAG-AGGHRNEV-LSVDF 182 (346)
Q Consensus 106 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~-~~~~~~~v-~~~~~ 182 (346)
-.-.|.|-|+..++.+..+... + |.-..|..+.-|.+-+.||.+.-..+. .|+....... ......++ ..-++
T Consensus 116 Pa~SVtVVDl~~~kvv~ei~~P-G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~ 191 (342)
T PF06433_consen 116 PATSVTVVDLAAKKVVGEIDTP-G---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAY 191 (342)
T ss_dssp SSEEEEEEETTTTEEEEEEEGT-S---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EE
T ss_pred CCCeEEEEECCCCceeeeecCC-C---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccce
Confidence 3467889999988888877632 2 333334355678888899999999887 4554422211 11112222 23334
Q ss_pred cCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEee--
Q 019117 183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-- 258 (346)
Q Consensus 183 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-- 258 (346)
.. .+..++--+.+|.|+--|+.........+......... .-...++.-.-++++ .+.|.+--.
T Consensus 192 ~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~-----------~~~WrPGG~Q~~A~~~~~~rlyvLMh~g 259 (342)
T PF06433_consen 192 SR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEK-----------ADGWRPGGWQLIAYHAASGRLYVLMHQG 259 (342)
T ss_dssp ET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHH-----------HTTEEE-SSS-EEEETTTTEEEEEEEE-
T ss_pred EC-CCCeEEEEecCCEEEEEeccCCcccccCcccccCcccc-----------ccCcCCcceeeeeeccccCeEEEEecCC
Confidence 43 33334446778999988887744322222111100000 000011111122332 223222211
Q ss_pred ------c--CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEE-EEcCCCcEEEEEcCCCCcceee
Q 019117 259 ------D--NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA-IGNREGKIFVWELQSSPPVLIA 329 (346)
Q Consensus 259 ------d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~ 329 (346)
| ..|-++|+.+.+ .+.++... .++.+|..+.|.+ .+|. ....++.|.+||..+++.+...
T Consensus 260 ~~gsHKdpgteVWv~D~~t~k---------rv~Ri~l~-~~~~Si~Vsqd~~-P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 260 GEGSHKDPGTEVWVYDLKTHK---------RVARIPLE-HPIDSIAVSQDDK-PLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp -TT-TTS-EEEEEEEETTTTE---------EEEEEEEE-EEESEEEEESSSS--EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred CCCCccCCceEEEEEECCCCe---------EEEEEeCC-CccceEEEccCCC-cEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 1 137777888776 56666542 3678999999886 4554 4567899999999999877665
Q ss_pred eeeee
Q 019117 330 RLICF 334 (346)
Q Consensus 330 ~~~~~ 334 (346)
..-+.
T Consensus 329 ~~lG~ 333 (342)
T PF06433_consen 329 EQLGE 333 (342)
T ss_dssp ---SS
T ss_pred hccCC
Confidence 54443
No 324
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.48 E-value=0.00038 Score=60.97 Aligned_cols=268 Identities=12% Similarity=0.050 Sum_probs=130.7
Q ss_pred cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEE-EEEEEcCCCCcEEEEee---------cCCeEEEEEccCc
Q 019117 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYT-VSWACNVDGIPFLVAGG---------INGIIRVIDVSNE 118 (346)
Q Consensus 50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~ 118 (346)
..+..++.++ |..+|..+++.+.....-........+.. ..+. ++ .++.++ .+|.+..+|..++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~---~~--~v~vg~~~~~~~~~~~~g~v~alD~~TG 185 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV---KK--LVIIGSSGAEFFACGVRGALRAYDVETG 185 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE---CC--EEEEeccccccccCCCCcEEEEEECCCC
Confidence 4555555555 99999999988766553111000000110 1111 22 454543 3688999999999
Q ss_pred ceeeeeccCCCc--------------------e-EEEEEeCCCCceEEEeeCCC------------------CEEEEecC
Q 019117 119 KLHKSFVGHGDS--------------------I-NEIRTQPLKPSLVVSASKDE------------------SVRLWNVQ 159 (346)
Q Consensus 119 ~~~~~~~~~~~~--------------------v-~~~~~~~~~~~~l~s~~~d~------------------~i~iwd~~ 159 (346)
+.+..+...... + ...++.+ ....++.++.++ .|.-+|..
T Consensus 186 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~ 264 (488)
T cd00216 186 KLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDAD 264 (488)
T ss_pred ceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCC
Confidence 988776532110 1 1233444 456677776554 69999999
Q ss_pred CCeeEEEecccCCCCc----ceEEEEec---CCCC---cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccc
Q 019117 160 TGICILIFAGAGGHRN----EVLSVDFH---PSDI---YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYV 229 (346)
Q Consensus 160 ~~~~~~~~~~~~~~~~----~v~~~~~~---~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (346)
+|+.+..++.. .+.. ......+. ..++ ..++.++.+|.+...|.++++...............
T Consensus 265 tG~~~W~~~~~-~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~~~------ 337 (488)
T cd00216 265 TGKVKWFYQTT-PHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQPMAYD------ 337 (488)
T ss_pred CCCEEEEeeCC-CCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeeccccccC------
Confidence 99999887632 1111 00000111 0122 367888889999999999966543332210000000
Q ss_pred eeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEE
Q 019117 230 QFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG 309 (346)
Q Consensus 230 ~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~ 309 (346)
...++.-..+.. ..+......+.....+|.+.-.|+.+++................ ..+...-.....+ .+|+.+
T Consensus 338 ~~~vyv~~~~~~--~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~-g~~~~~~~~~~~g--~~v~~g 412 (488)
T cd00216 338 PGLVYLGAFHIP--LGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNI-GFPHWGGSLATAG--NLVFAG 412 (488)
T ss_pred CceEEEcccccc--ccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCcccccccc-CCcccCcceEecC--CeEEEE
Confidence 000000000000 00000000000112355666667766653222111100000000 0011100111233 478888
Q ss_pred cCCCcEEEEEcCCCCcceeeeeeeeE
Q 019117 310 NREGKIFVWELQSSPPVLIARLICFS 335 (346)
Q Consensus 310 ~~dg~i~iwd~~~~~~~~~~~~~~~~ 335 (346)
+.||.|+.+|..+|+.+-..++.+.+
T Consensus 413 ~~dG~l~ald~~tG~~lW~~~~~~~~ 438 (488)
T cd00216 413 AADGYFRAFDATTGKELWKFRTPSGI 438 (488)
T ss_pred CCCCeEEEEECCCCceeeEEECCCCc
Confidence 99999999999999988777775543
No 325
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.42 E-value=0.00051 Score=54.61 Aligned_cols=219 Identities=12% Similarity=0.027 Sum_probs=121.5
Q ss_pred EEcCCCCcEEEEeecCC-eEEEEEccCcceeeeeccCCCceE--EEEEeCCCCceEEEeeC-----CCCEEEEecC-CCe
Q 019117 92 ACNVDGIPFLVAGGING-IIRVIDVSNEKLHKSFVGHGDSIN--EIRTQPLKPSLVVSASK-----DESVRLWNVQ-TGI 162 (346)
Q Consensus 92 ~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~s~~~-----d~~i~iwd~~-~~~ 162 (346)
+.+|.....++.+-.-| ...+||..+++....+....+.-. --.|++ ++.+|++.-. .|.|-|||.. .-+
T Consensus 11 a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~~~~ 89 (305)
T PF07433_consen 11 AAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAARGYR 89 (305)
T ss_pred eeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECcCCcE
Confidence 33464443667776655 467899999988777654333221 356899 8888888643 4789999998 667
Q ss_pred eEEEecccCCCCcceEEEEecCCCCcEEEEEecC-------CeEEEEEccccceeeeeceeecCCCCCCCCccceeceE-
Q 019117 163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF- 234 (346)
Q Consensus 163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 234 (346)
.+.++. .+.-....+.+.| ++..|+.+... |.-++ ++.+++..+.. .+. .....+.
T Consensus 90 ri~E~~---s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kL-Nl~tM~psL~~----ld~-------~sG~ll~q 153 (305)
T PF07433_consen 90 RIGEFP---SHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKL-NLDTMQPSLVY----LDA-------RSGALLEQ 153 (305)
T ss_pred EEeEec---CCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceec-ChhhcCCceEE----Eec-------CCCceeee
Confidence 777887 5766777888998 77666665321 11111 22222111110 000 0011111
Q ss_pred -EE--eecccceEEEEec--CCEEEEEeecCe-------EEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCC
Q 019117 235 -IA--SVHSNYVDCNRWL--GDFILSKSVDNE-------IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH 302 (346)
Q Consensus 235 -~~--~~~~~~i~~~~~~--~~~l~~~~~d~~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 302 (346)
.+ ..|...|+.+++. |..++..-..|. |-+++....- ..... .......-.+-+-+|+++.++.
T Consensus 154 ~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~-~~~~~---p~~~~~~l~~Y~gSIa~~~~g~ 229 (305)
T PF07433_consen 154 VELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGAL-RLLPA---PEEQWRRLNGYIGSIAADRDGR 229 (305)
T ss_pred eecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcc-eeccC---ChHHHHhhCCceEEEEEeCCCC
Confidence 23 3466677777777 222222222211 2233322210 00000 0011122245788999999984
Q ss_pred cceEEEEcCCCcEEEEEcCCCCcceeeeee
Q 019117 303 YNAAAIGNREGKIFVWELQSSPPVLIARLI 332 (346)
Q Consensus 303 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 332 (346)
.+.+|+-..|.+.+||..+++.+....+.
T Consensus 230 -~ia~tsPrGg~~~~~d~~tg~~~~~~~l~ 258 (305)
T PF07433_consen 230 -LIAVTSPRGGRVAVWDAATGRLLGSVPLP 258 (305)
T ss_pred -EEEEECCCCCEEEEEECCCCCEeeccccC
Confidence 24455667889999999999876655443
No 326
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=1.6e-05 Score=70.02 Aligned_cols=107 Identities=16% Similarity=0.192 Sum_probs=79.3
Q ss_pred EEEEEeecCCCccEEEEEcC----Cc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117 38 AVVFNFIDSRYFNVFATVGG----NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (346)
Q Consensus 38 ~~~~~p~~~~~~~~la~~~~----~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 112 (346)
-..|+| ...+||+++- +| |.||- .+|++...+. .++...+++++|..- .|+.|-.-|.+.+
T Consensus 20 i~SWHP----sePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--------~P~hatSLCWHpe~~-vLa~gwe~g~~~v 85 (1416)
T KOG3617|consen 20 ISSWHP----SEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT--------YPVHATSLCWHPEEF-VLAQGWEMGVSDV 85 (1416)
T ss_pred ccccCC----CCceeEEEEecCCCCceEEEEe-cCCCCCcccc--------cceehhhhccChHHH-HHhhccccceeEE
Confidence 356888 4567777762 23 88876 5666433222 223333334447766 8888888999999
Q ss_pred EEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecC
Q 019117 113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159 (346)
Q Consensus 113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 159 (346)
|...+.+.......|..+|..+.|++ ++..++++..-|.|.+|...
T Consensus 86 ~~~~~~e~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 86 QKTNTTETHTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred EecCCceeeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence 99888777666778999999999999 89999999999999999875
No 327
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.41 E-value=8.5e-05 Score=49.06 Aligned_cols=104 Identities=14% Similarity=0.156 Sum_probs=74.2
Q ss_pred eEEEEEE-EcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeE
Q 019117 86 FYTVSWA-CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI 164 (346)
Q Consensus 86 v~~~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 164 (346)
|.+++++ ++.+|.+.|++|+.|..|++|+- .+.+..+. ..+.|+++.-.. ...|+.+..+|+|-+|+- .+.+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLG--GGRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcC--CCEEEEEecCCEEEEEeC--ccee
Confidence 4556554 45677779999999999999974 35666666 456678887775 478999999999999985 4455
Q ss_pred EEecccCCCCcceEEEEecC---CCCcEEEEEecCCeEE
Q 019117 165 LIFAGAGGHRNEVLSVDFHP---SDIYRIASCGMDNTVK 200 (346)
Q Consensus 165 ~~~~~~~~~~~~v~~~~~~~---~~~~~l~s~~~d~~i~ 200 (346)
...+ ....+.++++.. ++...|++|-.+|.|-
T Consensus 75 WRiK----SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIK----SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeec----cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 5555 344577777653 1234688888888774
No 328
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.41 E-value=2.4e-07 Score=81.38 Aligned_cols=159 Identities=14% Similarity=0.159 Sum_probs=105.3
Q ss_pred ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCC-
Q 019117 119 KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN- 197 (346)
Q Consensus 119 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~- 197 (346)
+..+++..|+...+|++|+- +.++|+.|+..|.|+++++.+|....... +|.++|+.+.-+. ++..+++.+.-.
T Consensus 1092 r~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~n---cH~SavT~vePs~-dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVN---CHQSAVTLVEPSV-DGSTQLTSSSSSS 1166 (1516)
T ss_pred ccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCcccccccc---ccccccccccccC-CcceeeeeccccC
Confidence 34566778889999999999 88999999999999999999999888888 8999999999987 666666554433
Q ss_pred -eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCC
Q 019117 198 -TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSP 274 (346)
Q Consensus 198 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~ 274 (346)
-..+|++... ..+..++. .-.++.|+ -+.-+.|.......+||+.++..
T Consensus 1167 PlsaLW~~~s~----------------------~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~-- 1218 (1516)
T KOG1832|consen 1167 PLSALWDASST----------------------GGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSP-- 1218 (1516)
T ss_pred chHHHhccccc----------------------cCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcH--
Confidence 4678998771 11222222 22355665 22334444445688999998763
Q ss_pred CCccccccccc-cC---CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 275 GEGTADILQKY-PV---PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 275 ~~~~~~~~~~~-~~---~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
+.++ .. ....-....|+|+. .+++ .|| .+||++..+
T Consensus 1219 -------l~tylt~~~~~~y~~n~a~FsP~D--~LIl---ndG--vLWDvR~~~ 1258 (1516)
T KOG1832|consen 1219 -------LQTYLTDTVTSSYSNNLAHFSPCD--TLIL---NDG--VLWDVRIPE 1258 (1516)
T ss_pred -------HHHhcCcchhhhhhccccccCCCc--ceEe---eCc--eeeeeccHH
Confidence 3221 11 11122556777776 3444 344 257766543
No 329
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.40 E-value=9.6e-05 Score=63.88 Aligned_cols=105 Identities=14% Similarity=0.135 Sum_probs=73.8
Q ss_pred CccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCccee---e-
Q 019117 48 YFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH---K- 122 (346)
Q Consensus 48 ~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~- 122 (346)
.+++++.|++-| +++|+...+.. ..++. +.....+ +..+.+++.. ++|.|+..|.|.++-++.+.+. .
T Consensus 44 t~~~l~~GsS~G~lyl~~R~~~~~-~~~~~---~~~~~~~--~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~p~~~~~~ 116 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRHTGEM-RKLKN---EGATGIT--CVRSVSSVEY-LVAAGTASGRVSVFQLNKELPRDLDYV 116 (726)
T ss_pred CCceEEEecccceEEEEecCchhh-hcccc---cCccceE--EEEEecchhH-hhhhhcCCceEEeehhhccCCCcceee
Confidence 568999999888 88888554443 32221 1122222 2333446666 8899999999999988764321 1
Q ss_pred -ee-ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC
Q 019117 123 -SF-VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160 (346)
Q Consensus 123 -~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 160 (346)
.. +.|...|++++|++ ++..+++|...|+|.+-.+..
T Consensus 117 t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 117 TPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccccccCCceEEEEEecc-cccEEeecCCCceEEEEEech
Confidence 11 23788999999999 999999999999998887765
No 330
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=8.7e-05 Score=65.58 Aligned_cols=186 Identities=11% Similarity=0.192 Sum_probs=116.4
Q ss_pred CccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC-----eEEEEEccCc---
Q 019117 48 YFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING-----IIRVIDVSNE--- 118 (346)
Q Consensus 48 ~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~--- 118 (346)
.+..+|.|+.+| |.+++ ..-+.+..++.+ ...+ +.+....++.++|++.+.|+ .++||+++.-
T Consensus 34 ~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~-----~~si--v~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 34 STGSVVIGTADGRVVILN-SSFQLIRGFQAY-----EQSI--VQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred CCceEEEeeccccEEEec-ccceeeehheec-----chhh--hhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 567888888888 77776 222222444432 2221 23333345544888877665 4999998643
Q ss_pred ---ceee--eec-----cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecC----CCeeEEEecccCCCCcceEEEEecC
Q 019117 119 ---KLHK--SFV-----GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ----TGICILIFAGAGGHRNEVLSVDFHP 184 (346)
Q Consensus 119 ---~~~~--~~~-----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~----~~~~~~~~~~~~~~~~~v~~~~~~~ 184 (346)
.++. .+. ....++.+++.+. +-..++.|-.+|.|..+.-+ .+....... .-.++|+++++..
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~---~~~~pITgL~~~~ 181 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSH---RGKEPITGLALRS 181 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeec---cCCCCceeeEEec
Confidence 2231 111 2356788999998 78899999999999988532 111111111 3467999999986
Q ss_pred CCCcE-EEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceec-eEEEeecccceEEEEec-CCE-EEEEeecC
Q 019117 185 SDIYR-IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP-VFIASVHSNYVDCNRWL-GDF-ILSKSVDN 260 (346)
Q Consensus 185 ~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~-~~~-l~~~~~d~ 260 (346)
++.. +++++ ...|.+|.+.. +.| ...+..|...+.|..++ +.. +++++ +.
T Consensus 182 -d~~s~lFv~T-t~~V~~y~l~g-----------------------r~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e 235 (933)
T KOG2114|consen 182 -DGKSVLFVAT-TEQVMLYSLSG-----------------------RTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SE 235 (933)
T ss_pred -CCceeEEEEe-cceeEEEEecC-----------------------CCcceeeeccCCccceeeecCCCCccEEEec-Cc
Confidence 5554 44443 45799999886 122 33466777888898888 444 44444 34
Q ss_pred eEEEEcCCCCC
Q 019117 261 EIVLWEPKMKE 271 (346)
Q Consensus 261 ~i~iwd~~~~~ 271 (346)
.+.+|+....+
T Consensus 236 ~l~fY~sd~~~ 246 (933)
T KOG2114|consen 236 FLYFYDSDGRG 246 (933)
T ss_pred eEEEEcCCCcc
Confidence 69999988654
No 331
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.39 E-value=0.00014 Score=66.86 Aligned_cols=198 Identities=13% Similarity=0.132 Sum_probs=116.3
Q ss_pred CceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117 34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 112 (346)
+.|.++.|.. +..-++.+...| |.+-|..+... . +-+. ....|.+.+|+ ||++ .++..+..+++.+
T Consensus 69 ~~i~s~~fl~----d~~~i~v~~~~G~iilvd~et~~~-e-ivg~----vd~GI~aaswS--~Dee-~l~liT~~~tll~ 135 (1265)
T KOG1920|consen 69 DEIVSVQFLA----DTNSICVITALGDIILVDPETLEL-E-IVGN----VDNGISAASWS--PDEE-LLALITGRQTLLF 135 (1265)
T ss_pred cceEEEEEec----ccceEEEEecCCcEEEEcccccce-e-eeee----ccCceEEEeec--CCCc-EEEEEeCCcEEEE
Confidence 5788888887 334444444444 77777655433 1 2221 45678778887 8888 8888887777766
Q ss_pred EEc----cCcce-------------------eeeeccC---------------------CCceEEEEEeCCCCceEEEe-
Q 019117 113 IDV----SNEKL-------------------HKSFVGH---------------------GDSINEIRTQPLKPSLVVSA- 147 (346)
Q Consensus 113 wd~----~~~~~-------------------~~~~~~~---------------------~~~v~~~~~~~~~~~~l~s~- 147 (346)
-.- -..+. ...+++. .+.=+.|.|-- ++.++++.
T Consensus 136 mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~ 214 (1265)
T KOG1920|consen 136 MTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSF 214 (1265)
T ss_pred EeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEE
Confidence 432 11111 0111110 01123588887 78888873
Q ss_pred ----eCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe---cCCeEEEEEccccceeeeeceeecCC
Q 019117 148 ----SKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG---MDNTVKIWSMKEFWTYVEKSFTWTDL 220 (346)
Q Consensus 148 ----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~ 220 (346)
...+.|++||-+ |..-..-. ...+.=.+++|-| .|.++++-. .|+.|.+|.-.....
T Consensus 215 ~~~~~~~RkirV~drE-g~Lns~se---~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~h----------- 278 (1265)
T KOG1920|consen 215 VESETGTRKIRVYDRE-GALNSTSE---PVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRH----------- 278 (1265)
T ss_pred EeccCCceeEEEeccc-chhhcccC---cccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccc-----------
Confidence 333789999976 43322222 2334446899999 888888763 355788887655211
Q ss_pred CCCCCCccceeceEEEeecccceEEEEec--CCEEEE---EeecCeEEEEcCCCC
Q 019117 221 PSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS---KSVDNEIVLWEPKMK 270 (346)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~---~~~d~~i~iwd~~~~ 270 (346)
+.-..........+..++|+ +..|++ ......|++|-+.+.
T Consensus 279 ---------g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 279 ---------GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ---------cccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 00011122233348889998 677777 445556999988765
No 332
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.37 E-value=0.0002 Score=60.85 Aligned_cols=115 Identities=8% Similarity=0.081 Sum_probs=79.0
Q ss_pred ceEEEEEeCCCCceEEEee----CCCC----EEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEE
Q 019117 130 SINEIRTQPLKPSLVVSAS----KDES----VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI 201 (346)
Q Consensus 130 ~v~~~~~~~~~~~~l~s~~----~d~~----i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i 201 (346)
...++.|+-..++.+.+.. .+|. -++|++...+....-...-.....|.+++++| +...++.|..||.|.+
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIIL 285 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEE
Confidence 3467788875666666542 3443 34666654432211111114778999999999 8899999999999999
Q ss_pred EEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCC
Q 019117 202 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMK 270 (346)
Q Consensus 202 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~ 270 (346)
||.... +.......-..+.++|+ |..+++|+..|.+.+||+.-.
T Consensus 286 yD~~~~-------------------------~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 286 YDTTRG-------------------------VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEcCCC-------------------------eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 999772 22222334456778887 779999999999999998644
No 333
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.35 E-value=0.00035 Score=58.61 Aligned_cols=78 Identities=12% Similarity=0.191 Sum_probs=45.9
Q ss_pred cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeee-ccC----------
Q 019117 59 RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF-VGH---------- 127 (346)
Q Consensus 59 ~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~---------- 127 (346)
...+||+.++........ ...+....|+ |+|+ .++-.. ++.|.+++..+++..+.- .+.
T Consensus 24 ~y~i~d~~~~~~~~l~~~------~~~~~~~~~s--P~g~-~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dw 93 (353)
T PF00930_consen 24 DYYIYDIETGEITPLTPP------PPKLQDAKWS--PDGK-YIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDW 93 (353)
T ss_dssp EEEEEETTTTEEEESS-E------ETTBSEEEE---SSST-EEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--H
T ss_pred eEEEEecCCCceEECcCC------ccccccceee--cCCC-eeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccce
Confidence 388899887654433322 2344446666 9998 777775 678999998776544322 220
Q ss_pred ------CCceEEEEEeCCCCceEEEe
Q 019117 128 ------GDSINEIRTQPLKPSLVVSA 147 (346)
Q Consensus 128 ------~~~v~~~~~~~~~~~~l~s~ 147 (346)
-+.-..+-|+| ++++|+..
T Consensus 94 vyeEEv~~~~~~~~WSp-d~~~la~~ 118 (353)
T PF00930_consen 94 VYEEEVFDRRSAVWWSP-DSKYLAFL 118 (353)
T ss_dssp HHHHHTSSSSBSEEE-T-TSSEEEEE
T ss_pred eccccccccccceEECC-CCCEEEEE
Confidence 11235788999 66666654
No 334
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.32 E-value=0.00064 Score=51.91 Aligned_cols=104 Identities=20% Similarity=0.120 Sum_probs=78.5
Q ss_pred CCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC
Q 019117 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR 174 (346)
Q Consensus 95 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 174 (346)
++.+.+++.|+..+.+.--|..+|+....-. -...+.+-+.- -+++++.|...|.+++.+.++|.....+.. .
T Consensus 20 ~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~----~ 92 (354)
T KOG4649|consen 20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI----L 92 (354)
T ss_pred cCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeee----h
Confidence 5556699999999999999999998775433 12333333333 256799999999999999999998888873 3
Q ss_pred cceEE-EEecCCCCcEEEEEecCCeEEEEEccc
Q 019117 175 NEVLS-VDFHPSDIYRIASCGMDNTVKIWSMKE 206 (346)
Q Consensus 175 ~~v~~-~~~~~~~~~~l~s~~~d~~i~iwd~~~ 206 (346)
+.|.+ ....+ ++.++..++.|++....|.++
T Consensus 93 ~~vk~~a~~d~-~~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 93 ETVKVRAQCDF-DGGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred hhhccceEEcC-CCceEEEecCCCcEEEecccc
Confidence 33332 33455 788999999999999999988
No 335
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.31 E-value=0.0015 Score=55.11 Aligned_cols=227 Identities=11% Similarity=0.015 Sum_probs=119.5
Q ss_pred eEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc-------------------------------------------eee
Q 019117 86 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-------------------------------------------LHK 122 (346)
Q Consensus 86 v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------------------------------------------~~~ 122 (346)
|..++++ ++.. -|++|...|.|.||.+...+ +..
T Consensus 4 v~~vs~a--~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~ 80 (395)
T PF08596_consen 4 VTHVSFA--PETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLT 80 (395)
T ss_dssp EEEEEEE--TTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEE
T ss_pred EEEEEec--CCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchh
Confidence 4556666 6665 78888888998888763211 011
Q ss_pred eeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccC-----CCCcceEEEEecC----CC---CcEE
Q 019117 123 SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG-----GHRNEVLSVDFHP----SD---IYRI 190 (346)
Q Consensus 123 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~v~~~~~~~----~~---~~~l 190 (346)
.+....++|++++.+ +-.+++.|..+|.+.|.|++....+..-.... .....|+++.|.. ++ .-.+
T Consensus 81 l~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 81 LLDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp EE---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred heeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 222346789999997 56799999999999999998777776532211 1345688888862 12 2578
Q ss_pred EEEecCCeEEEEEccc-cceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEE-ec-------------------
Q 019117 191 ASCGMDNTVKIWSMKE-FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR-WL------------------- 249 (346)
Q Consensus 191 ~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~------------------- 249 (346)
++|+..|.+.+|.+.. ........+ ......+.+.|..+. ++
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~-----------------~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~ 221 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQF-----------------AGATTNHDSPILSIIPINADTGESALATISAMQGLSK 221 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEE-----------------EEEE--SS----EEEEEETTT--B-B-BHHHHHGGGG
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEE-----------------eeccccCCCceEEEEEEECCCCCcccCchhHhhcccc
Confidence 8899999999998863 111111000 001112223322222 10
Q ss_pred C---CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEe-----ecCCcceEEEEcCCCcEEEEEcC
Q 019117 250 G---DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS-----CDFHYNAAAIGNREGKIFVWELQ 321 (346)
Q Consensus 250 ~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~~~l~~~~~dg~i~iwd~~ 321 (346)
+ ..++....+..+|++..-+.+. ..+..........+.+- ..+ ..|++-..+|.|+++.+.
T Consensus 222 g~~i~g~vVvvSe~~irv~~~~~~k~---------~~K~~~~~~~~~~~~vv~~~~~~~~--~~Lv~l~~~G~i~i~SLP 290 (395)
T PF08596_consen 222 GISIPGYVVVVSESDIRVFKPPKSKG---------AHKSFDDPFLCSSASVVPTISRNGG--YCLVCLFNNGSIRIYSLP 290 (395)
T ss_dssp T----EEEEEE-SSEEEEE-TT---E---------EEEE-SS-EEEEEEEEEEEE-EEEE--EEEEEEETTSEEEEEETT
T ss_pred CCCcCcEEEEEcccceEEEeCCCCcc---------cceeeccccccceEEEEeecccCCc--eEEEEEECCCcEEEEECC
Confidence 1 1244445567899999887652 22221111122334442 233 578888899999999999
Q ss_pred CCCcceeeeeeee-----EEEEEecCCCC
Q 019117 322 SSPPVLIARLICF-----SLHVKYNPQSV 345 (346)
Q Consensus 322 ~~~~~~~~~~~~~-----~~~~~~spdg~ 345 (346)
.-+.+....+... .....++++|.
T Consensus 291 ~Lkei~~~~l~~~~d~~~~~~ssis~~Gd 319 (395)
T PF08596_consen 291 SLKEIKSVSLPPPLDSRRLSSSSISRNGD 319 (395)
T ss_dssp T--EEEEEE-SS---HHHHTT-EE-TTS-
T ss_pred CchHhhcccCCCccccccccccEECCCCC
Confidence 9776665555322 12345566553
No 336
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.29 E-value=0.0014 Score=54.21 Aligned_cols=225 Identities=12% Similarity=0.097 Sum_probs=124.1
Q ss_pred EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCC----CCcEEEEeec----------CCeEEEEEccCc----cee
Q 019117 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD----GIPFLVAGGI----------NGIIRVIDVSNE----KLH 121 (346)
Q Consensus 60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~l~~~~~----------dg~i~iwd~~~~----~~~ 121 (346)
|++.|..+.+.+..+.- + ..+.+.+++...-++ ..++|++|.. .|.|.++++... ..+
T Consensus 4 i~l~d~~~~~~~~~~~l---~-~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l 79 (321)
T PF03178_consen 4 IRLVDPTTFEVLDSFEL---E-PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL 79 (321)
T ss_dssp EEEEETTTSSEEEEEEE---E-TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE
T ss_pred EEEEeCCCCeEEEEEEC---C-CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE
Confidence 77888766665544432 1 345555554433232 1448887753 289999999884 122
Q ss_pred eee--ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe-eEEEecccCCCCcceEEEEecCCCCcEEEEEecCCe
Q 019117 122 KSF--VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT 198 (346)
Q Consensus 122 ~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 198 (346)
..+ ....++|++++-.. +. |+.+. .+.|.+|++...+ ....-.. .....+.++... +++++.|.....
T Consensus 80 ~~i~~~~~~g~V~ai~~~~--~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~--~~~~~i~sl~~~---~~~I~vgD~~~s 150 (321)
T PF03178_consen 80 KLIHSTEVKGPVTAICSFN--GR-LVVAV-GNKLYVYDLDNSKTLLKKAFY--DSPFYITSLSVF---KNYILVGDAMKS 150 (321)
T ss_dssp EEEEEEEESS-EEEEEEET--TE-EEEEE-TTEEEEEEEETTSSEEEEEEE---BSSSEEEEEEE---TTEEEEEESSSS
T ss_pred EEEEEEeecCcceEhhhhC--CE-EEEee-cCEEEEEEccCcccchhhhee--cceEEEEEEecc---ccEEEEEEcccC
Confidence 222 23578899988873 44 44443 3789999998777 4433321 133466777665 458889988888
Q ss_pred EEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCC
Q 019117 199 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE 276 (346)
Q Consensus 199 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~ 276 (346)
+.++..+.... .............++++.+- ++.++.+..+|.+.++...........
T Consensus 151 v~~~~~~~~~~--------------------~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~ 210 (321)
T PF03178_consen 151 VSLLRYDEENN--------------------KLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRD 210 (321)
T ss_dssp EEEEEEETTTE---------------------EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTT
T ss_pred EEEEEEEccCC--------------------EEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCccccc
Confidence 88875554110 11122223345567777775 569999999999999988743221111
Q ss_pred c--cccccccccCCCcCeeEE---EEeec--CCc----ceEEEEcCCCcEEEE
Q 019117 277 G--TADILQKYPVPECDIWFI---KFSCD--FHY----NAAAIGNREGKIFVW 318 (346)
Q Consensus 277 ~--~~~~~~~~~~~~~~v~~~---~~s~~--~~~----~~l~~~~~dg~i~iw 318 (346)
. .......+... ..|+++ ++.|. +.. ..++.++.+|.|...
T Consensus 211 ~~~~L~~~~~f~lg-~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 211 GDPKLERISSFHLG-DIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp TTTBEEEEEEEE-S-S-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ccccceeEEEEECC-CccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 1 11122222222 356666 44442 211 247777888888743
No 337
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.27 E-value=0.001 Score=51.95 Aligned_cols=215 Identities=8% Similarity=0.042 Sum_probs=107.0
Q ss_pred ccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccC-CCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC
Q 019117 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH-GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG 161 (346)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 161 (346)
...+..++|. |+...++++....+.|..++. +|+.++.++-. .+..-.|++.. ++.++++--.++.+.++++...
T Consensus 21 ~~e~SGLTy~--pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 21 LDELSGLTYN--PDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDD 96 (248)
T ss_dssp -S-EEEEEEE--TTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE---
T ss_pred cCCccccEEc--CCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEecc
Confidence 3457778877 876548888888899988886 57877776533 35678899986 6666666656899999988432
Q ss_pred e------eEEEec--ccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceece
Q 019117 162 I------CILIFA--GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 233 (346)
Q Consensus 162 ~------~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (346)
. ....+. ....+...+-.++|+| .++.|+.+-...-..+|.+........... ......
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~------------~~~~~~ 163 (248)
T PF06977_consen 97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFV------------SDDQDL 163 (248)
T ss_dssp -TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EE------------EE-HHH
T ss_pred ccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceee------------cccccc
Confidence 1 112222 1113456789999999 555566666666677777765110000000 000000
Q ss_pred EEEeecccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc
Q 019117 234 FIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN 310 (346)
Q Consensus 234 ~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~ 310 (346)
.........+.++.++ +++++.......|..+|.. ++.........-...+...-...-.|+|.++| + |...+
T Consensus 164 ~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G--~-LYIvs 239 (248)
T PF06977_consen 164 DDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG--N-LYIVS 239 (248)
T ss_dssp H-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT-----EEEEE
T ss_pred ccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC-CCEEEEEEeCCcccCcccccCCccEEEECCCC--C-EEEEc
Confidence 0011223346677777 5677778888888888844 33100000000000001111346779999988 3 44445
Q ss_pred CCCcEEEE
Q 019117 311 REGKIFVW 318 (346)
Q Consensus 311 ~dg~i~iw 318 (346)
+-+..++|
T Consensus 240 EpNlfy~f 247 (248)
T PF06977_consen 240 EPNLFYRF 247 (248)
T ss_dssp TTTEEEEE
T ss_pred CCceEEEe
Confidence 66665554
No 338
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.24 E-value=2.6e-07 Score=78.17 Aligned_cols=171 Identities=14% Similarity=0.221 Sum_probs=113.3
Q ss_pred eeecccCCCceEEEEEEeecCCCccEEEEEcCC----c-EEEEEeccC--ceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117 26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGN----R-VTVYQCLEG--GVIAALQSYVDEDKEESFYTVSWACNVDGI 98 (346)
Q Consensus 26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~----~-v~i~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (346)
.....+|....++++|++.| .+.||.|-+. . +.|||+.++ .+....+-.. .......+++|. .+.+
T Consensus 95 ~E~tp~~ar~Ct~lAwneLD---tn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~--~~l~gqns~cwl--rd~k 167 (783)
T KOG1008|consen 95 AEVTPGYARPCTSLAWNELD---TNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSS--STLDGQNSVCWL--RDTK 167 (783)
T ss_pred ceeccccccccccccccccc---HHHHHhhhhhhcccCCccceecccccCCCcccccccc--ccccCccccccc--cCcc
Confidence 34457888999999999953 4788887542 2 999999876 3332222111 133445567776 6777
Q ss_pred cEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEec-CC-CeeEEEeccc-CCCCc
Q 019117 99 PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV-QT-GICILIFAGA-GGHRN 175 (346)
Q Consensus 99 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~-~~~~~~~~~~-~~~~~ 175 (346)
++.+|.....+.++|++... .....-.+..+..+...|..++++++-. ||.|.+||. +. .+++..+... .....
T Consensus 168 -lvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~ 244 (783)
T KOG1008|consen 168 -LVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPK 244 (783)
T ss_pred -hhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCccc
Confidence 89999988899999987322 1111123456677888887778888766 899999993 32 2233333210 01223
Q ss_pred ceEEEEecCCCCcEEEEEecC-CeEEEEEccc
Q 019117 176 EVLSVDFHPSDIYRIASCGMD-NTVKIWSMKE 206 (346)
Q Consensus 176 ~v~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~ 206 (346)
.+..++|.|....++++...| ++|+.+|+..
T Consensus 245 ~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 245 QLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 589999999666677777665 5799999987
No 339
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.22 E-value=0.00012 Score=63.21 Aligned_cols=162 Identities=9% Similarity=0.094 Sum_probs=106.7
Q ss_pred cceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceee-eeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe
Q 019117 84 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHK-SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI 162 (346)
Q Consensus 84 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 162 (346)
..+.-.++. ..++ +++.|+..|.+.+|+-..++... ...+..+.+..+..++ ...++|.|+..|.|.++.+..+.
T Consensus 34 ~~v~lTc~d--st~~-~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 34 ARVKLTCVD--ATEE-YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred ceEEEEEee--cCCc-eEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccC
Confidence 344444554 5567 99999999999999966655332 2223455666777787 88899999999999999887543
Q ss_pred eEE--Ee-cccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeec
Q 019117 163 CIL--IF-AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 239 (346)
Q Consensus 163 ~~~--~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (346)
+-. .+ .....|...|++++|++ ++..+++|...|+|..-.+..... ...+...+..-
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~-------------------~~~~~q~il~~ 169 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQA-------------------FLSKSQEILSE 169 (726)
T ss_pred CCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhh-------------------hccccceeecc
Confidence 211 11 11123688999999998 999999999999999887766100 01223344445
Q ss_pred ccceEEEEecCCEEEEEeecCeEEEEcCCCC
Q 019117 240 SNYVDCNRWLGDFILSKSVDNEIVLWEPKMK 270 (346)
Q Consensus 240 ~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~ 270 (346)
...|..+.+...+|++++.-. -.+++....
T Consensus 170 ds~IVQlD~~q~~LLVStl~r-~~Lc~tE~e 199 (726)
T KOG3621|consen 170 DSEIVQLDYLQSYLLVSTLTR-CILCQTEAE 199 (726)
T ss_pred CcceEEeecccceehHhhhhh-hheeecchh
Confidence 666777777755544444333 235555443
No 340
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.18 E-value=0.0021 Score=51.92 Aligned_cols=240 Identities=10% Similarity=-0.010 Sum_probs=128.1
Q ss_pred CccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeee----
Q 019117 48 YFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS---- 123 (346)
Q Consensus 48 ~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---- 123 (346)
.++.|+.|.++|+.+++.........+. +...|..+... ++-+ .|++-+ |+.+.++++..-.....
T Consensus 6 ~~~~L~vGt~~Gl~~~~~~~~~~~~~i~------~~~~I~ql~vl--~~~~-~llvLs-d~~l~~~~L~~l~~~~~~~~~ 75 (275)
T PF00780_consen 6 WGDRLLVGTEDGLYVYDLSDPSKPTRIL------KLSSITQLSVL--PELN-LLLVLS-DGQLYVYDLDSLEPVSTSAPL 75 (275)
T ss_pred CCCEEEEEECCCEEEEEecCCccceeEe------ecceEEEEEEe--cccC-EEEEEc-CCccEEEEchhhccccccccc
Confidence 4678888989999999983333322222 22237667766 5554 555554 59999999876543321
Q ss_pred ----------eccCCCceEEEE--EeCCCCceEEEeeCCCCEEEEecCCC-----eeEEEecccCCCCcceEEEEecCCC
Q 019117 124 ----------FVGHGDSINEIR--TQPLKPSLVVSASKDESVRLWNVQTG-----ICILIFAGAGGHRNEVLSVDFHPSD 186 (346)
Q Consensus 124 ----------~~~~~~~v~~~~--~~~~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~ 186 (346)
.......+...+ -...+...|+.+ ...+|.+|..... +..+++. -...+.+++|.+
T Consensus 76 ~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~----lp~~~~~i~~~~-- 148 (275)
T PF00780_consen 76 AFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS----LPDPPSSIAFLG-- 148 (275)
T ss_pred cccccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE----cCCCcEEEEEeC--
Confidence 111233444444 112133344444 4568999888653 4556665 568899999983
Q ss_pred CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEE
Q 019117 187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLW 265 (346)
Q Consensus 187 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iw 265 (346)
+.++.|.. +...+.|+.+............. ...........++..+... +.+|++- |..-.+.
T Consensus 149 -~~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv 213 (275)
T PF00780_consen 149 -NKICVGTS-KGFYLIDLNTGSPSELLDPSDSS-----------SSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFV 213 (275)
T ss_pred -CEEEEEeC-CceEEEecCCCCceEEeCccCCc-----------chhhhcccCCCceEEEEeCCceEEEEe--cceEEEE
Confidence 45666654 45778888863321111000000 0001111122334444444 4455542 3344444
Q ss_pred cCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee
Q 019117 266 EPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC 333 (346)
Q Consensus 266 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 333 (346)
|...... ....+... ..+.++++.. .+|++.+.+ .|.||++.+++.++....++
T Consensus 214 ~~~G~~~--------r~~~i~W~-~~p~~~~~~~----pyli~~~~~-~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 214 NKNGEPS--------RKSTIQWS-SAPQSVAYSS----PYLIAFSSN-SIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred cCCCCcC--------cccEEEcC-CchhEEEEEC----CEEEEECCC-EEEEEECcCCcEEEEEECCC
Confidence 5433210 11122222 2445565643 467776664 59999999998877766554
No 341
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.17 E-value=0.0014 Score=54.20 Aligned_cols=181 Identities=11% Similarity=0.182 Sum_probs=107.1
Q ss_pred CeEEEEEccCcceeeeecc-CCCceEE---EEEeCC---CCceEEEeeC----------CCCEEEEecCCC----eeEEE
Q 019117 108 GIIRVIDVSNEKLHKSFVG-HGDSINE---IRTQPL---KPSLVVSASK----------DESVRLWNVQTG----ICILI 166 (346)
Q Consensus 108 g~i~iwd~~~~~~~~~~~~-~~~~v~~---~~~~~~---~~~~l~s~~~----------d~~i~iwd~~~~----~~~~~ 166 (346)
..|++.|..+.+.+..+.- ....+.+ +.+..+ ...+|+.|.. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3578888877776655432 2233343 333321 1467776643 288999999874 22222
Q ss_pred ecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEE
Q 019117 167 FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN 246 (346)
Q Consensus 167 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 246 (346)
+... ...++|++++-. ++.++++. ++.|.+|++...+. ..........-.+.++
T Consensus 82 i~~~-~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~---------------------l~~~~~~~~~~~i~sl 135 (321)
T PF03178_consen 82 IHST-EVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKT---------------------LLKKAFYDSPFYITSL 135 (321)
T ss_dssp EEEE-EESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSS---------------------EEEEEEE-BSSSEEEE
T ss_pred EEEE-eecCcceEhhhh--CCEEEEee--cCEEEEEEccCccc---------------------chhhheecceEEEEEE
Confidence 2111 357899999876 45544433 47999999988320 0111111223367788
Q ss_pred EecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117 247 RWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (346)
Q Consensus 247 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~ 322 (346)
...+++++.|.....+.++..+.... ....+.. ......++++.|-+++ +.++++..+|.+.++....
T Consensus 136 ~~~~~~I~vgD~~~sv~~~~~~~~~~-----~l~~va~-d~~~~~v~~~~~l~d~--~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 136 SVFKNYILVGDAMKSVSLLRYDEENN-----KLILVAR-DYQPRWVTAAEFLVDE--DTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEETTEEEEEESSSSEEEEEEETTTE------EEEEEE-ESS-BEEEEEEEE-SS--SEEEEEETTSEEEEEEE-S
T ss_pred eccccEEEEEEcccCEEEEEEEccCC-----EEEEEEe-cCCCccEEEEEEecCC--cEEEEEcCCCeEEEEEECC
Confidence 77799999999988888885554210 0111111 1224468888888777 4899999999999998863
No 342
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.13 E-value=0.0029 Score=52.09 Aligned_cols=147 Identities=13% Similarity=0.079 Sum_probs=78.1
Q ss_pred CccEEEE-EcCCc---EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeee
Q 019117 48 YFNVFAT-VGGNR---VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS 123 (346)
Q Consensus 48 ~~~~la~-~~~~~---v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 123 (346)
+|+.|+. +..++ +.+.|+.+++..+....- ........++ ++.+ .++-......|+-.|+++.+....
T Consensus 46 dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~-----g~~~~g~~~s--~~~~-~~~Yv~~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 46 DGRKLLFASDFDGNRNLYLLDLATGEITQLTDGP-----GDNTFGGFLS--PDDR-ALYYVKNGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp TS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS------B-TTT-EE---TTSS-EEEEEETTTEEEEEETTT--EEEE
T ss_pred CCCEEEEEeccCCCcceEEEEcccCEEEECccCC-----CCCccceEEe--cCCC-eEEEEECCCeEEEEECCcCcEEEE
Confidence 5544444 44344 888888887765544421 1111113333 7777 665555567899999999887666
Q ss_pred eccCCCceEEEEEeCC-CCceEEEee---C-------------------CCCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117 124 FVGHGDSINEIRTQPL-KPSLVVSAS---K-------------------DESVRLWNVQTGICILIFAGAGGHRNEVLSV 180 (346)
Q Consensus 124 ~~~~~~~v~~~~~~~~-~~~~l~s~~---~-------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 180 (346)
+......+-...|..+ +...++-.- . ...|.-.|+.+|+....+. ....+..+
T Consensus 118 y~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~----~~~wlgH~ 193 (386)
T PF14583_consen 118 YEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE----DTDWLGHV 193 (386)
T ss_dssp EE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE----ESS-EEEE
T ss_pred EECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe----cCccccCc
Confidence 6666666655666432 333433211 1 1235566788877666665 56788899
Q ss_pred EecCCCCcEEEEEec---CCe-EEEEEccc
Q 019117 181 DFHPSDIYRIASCGM---DNT-VKIWSMKE 206 (346)
Q Consensus 181 ~~~~~~~~~l~s~~~---d~~-i~iwd~~~ 206 (346)
.|+|.+..+|+-|.+ +.. -+||-++.
T Consensus 194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~ 223 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINT 223 (386)
T ss_dssp EEETTEEEEEEEEE-S-TTTSS-SEEEEET
T ss_pred ccCCCCCCEEEEeccCCcceeceEEEEEEc
Confidence 999977777777654 222 37787766
No 343
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.11 E-value=0.0021 Score=49.19 Aligned_cols=137 Identities=14% Similarity=0.051 Sum_probs=88.6
Q ss_pred ccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccC
Q 019117 49 FNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH 127 (346)
Q Consensus 49 ~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 127 (346)
..+++.|+..+ +.-.|..+|+...... -+..+.+-++. -|. +++.|..+|.+.+.+.++|.....+..-
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i------lg~RiE~sa~v---vgd-fVV~GCy~g~lYfl~~~tGs~~w~f~~~ 92 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI------LGVRIECSAIV---VGD-FVVLGCYSGGLYFLCVKTGSQIWNFVIL 92 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh------hCceeeeeeEE---ECC-EEEEEEccCcEEEEEecchhheeeeeeh
Confidence 35677777666 7777777777544322 33444444443 245 8999999999999999999887777643
Q ss_pred CCceE-EEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEE
Q 019117 128 GDSIN-EIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI 201 (346)
Q Consensus 128 ~~~v~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i 201 (346)
. .|. .....+ ++.++..|+.|++.+..|.++..++...+. -.+...+=+..| ...-|+.+...|.+.-
T Consensus 93 ~-~vk~~a~~d~-~~glIycgshd~~~yalD~~~~~cVykskc---gG~~f~sP~i~~-g~~sly~a~t~G~vla 161 (354)
T KOG4649|consen 93 E-TVKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSKC---GGGTFVSPVIAP-GDGSLYAAITAGAVLA 161 (354)
T ss_pred h-hhccceEEcC-CCceEEEecCCCcEEEecccccceEEeccc---CCceeccceecC-CCceEEEEeccceEEE
Confidence 2 232 233444 788999999999999999999999988762 222222333444 3333444444455443
No 344
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.09 E-value=0.00061 Score=45.10 Aligned_cols=104 Identities=10% Similarity=0.076 Sum_probs=67.8
Q ss_pred eEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEE
Q 019117 36 LYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVID 114 (346)
Q Consensus 36 v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd 114 (346)
|++|++...+....+-|++|++|. |++|+- .+.+..+. ..+.+..++-. .. . .++.+..+|+|-+|+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~------e~~~v~~L~~~--~~-~-~F~Y~l~NGTVGvY~ 69 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT------ETDKVTSLCSL--GG-G-RFAYALANGTVGVYD 69 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe------cccceEEEEEc--CC-C-EEEEEecCCEEEEEe
Confidence 778888875543346788888888 999983 34444444 34455555443 33 3 799999999999998
Q ss_pred ccCcceeeeeccCCCceEEEEEeCCC---CceEEEeeCCCCEE
Q 019117 115 VSNEKLHKSFVGHGDSINEIRTQPLK---PSLVVSASKDESVR 154 (346)
Q Consensus 115 ~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~s~~~d~~i~ 154 (346)
- .+.+..++.- ..+.++.+...+ ...|++|-.+|.|-
T Consensus 70 ~--~~RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 70 R--SQRLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred C--cceeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4 3344455533 336666665422 23788888888764
No 345
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.08 E-value=0.0014 Score=57.26 Aligned_cols=255 Identities=14% Similarity=0.079 Sum_probs=133.1
Q ss_pred EEEEEcCCc-EEEEEeccCceeeeEeeeecCCCc--------cceE---------------EEEEEE---cCCCCcEEEE
Q 019117 51 VFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKE--------ESFY---------------TVSWAC---NVDGIPFLVA 103 (346)
Q Consensus 51 ~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~--------~~v~---------------~~~~~~---~~~~~~~l~~ 103 (346)
.|.+|+..+ |+|+-+-+.+.++.+..|....-. ..+. ...+++ ..||+ +|..
T Consensus 68 ~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr-~~fi 146 (635)
T PRK02888 68 GFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGR-YLFI 146 (635)
T ss_pred EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCcccee-EEEE
Confidence 355666666 999999888888888777543210 1111 011111 13566 5655
Q ss_pred ee-cCCeEEEEEccCcceeeeecc-CCCceEEEEEe--CCCCceEEEe------------------eCCCCEEEEecCCC
Q 019117 104 GG-INGIIRVIDVSNEKLHKSFVG-HGDSINEIRTQ--PLKPSLVVSA------------------SKDESVRLWNVQTG 161 (346)
Q Consensus 104 ~~-~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~~l~s~------------------~~d~~i~iwd~~~~ 161 (346)
-. .+..|...+++.-++-+.+.- ....+..+.+- | +..+++.+ -..+.+.+.|..+.
T Consensus 147 ndk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p-~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etm 225 (635)
T PRK02888 147 NDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIP-RTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETM 225 (635)
T ss_pred ecCCCcceEEEECccEeeceeEeCCCccCccccCccccC-CccEEEeCcccccccCCCCCEeecccceeEEEEEEECccc
Confidence 54 345565566554443222211 12223333332 3 22233322 23355677777777
Q ss_pred eeEEEecccCCCCcceEEEEecCCCCcEEEEEecC---C-eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe
Q 019117 162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD---N-TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 237 (346)
Q Consensus 162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (346)
+....+. -.+....++++| ++.++++.+.+ | ++..-+.... . ....
T Consensus 226 eV~~qV~----Vdgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~-----------------------d--~~vv 275 (635)
T PRK02888 226 EVAWQVM----VDGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAER-----------------------D--WVVV 275 (635)
T ss_pred eEEEEEE----eCCCcccceECC-CCCEEEEeccCcccCcceeeeccccC-----------------------c--eEEE
Confidence 7666665 344567788898 66666666422 1 2222222110 0 0011
Q ss_pred ecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEE
Q 019117 238 VHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV 317 (346)
Q Consensus 238 ~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~i 317 (346)
.+...+..+.-.|++... .++.|.+.|..+.... ....+..+... .....+.++|||+ .+++++..++.+.|
T Consensus 276 fni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~----~~~v~~yIPVG-KsPHGV~vSPDGk-ylyVanklS~tVSV 347 (635)
T PRK02888 276 FNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANA----GSALTRYVPVP-KNPHGVNTSPDGK-YFIANGKLSPTVTV 347 (635)
T ss_pred EchHHHHHhhhCCCEEEE--CCCEEEEEECCccccC----CcceEEEEECC-CCccceEECCCCC-EEEEeCCCCCcEEE
Confidence 111111111112555554 3678999999871000 00133333332 3678899999995 35666667999999
Q ss_pred EEcCCCCc------------ceeeeeeeeEEEEEecCCCC
Q 019117 318 WELQSSPP------------VLIARLICFSLHVKYNPQSV 345 (346)
Q Consensus 318 wd~~~~~~------------~~~~~~~~~~~~~~~spdg~ 345 (346)
.|+++.+. +....+...+.+.+|.++|.
T Consensus 348 IDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~ 387 (635)
T PRK02888 348 IDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGN 387 (635)
T ss_pred EEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCC
Confidence 99998653 23334444567888888874
No 346
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=98.00 E-value=0.0068 Score=51.13 Aligned_cols=95 Identities=16% Similarity=0.219 Sum_probs=62.2
Q ss_pred EEEEEeecCCCccEEEEEcCCcEEE----EEec-cC----ceeeeEeeeecCCCccceEEEEEEEc---------CCCCc
Q 019117 38 AVVFNFIDSRYFNVFATVGGNRVTV----YQCL-EG----GVIAALQSYVDEDKEESFYTVSWACN---------VDGIP 99 (346)
Q Consensus 38 ~~~~~p~~~~~~~~la~~~~~~v~i----~~~~-~~----~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~~~ 99 (346)
.++.+| ++++||.+..+.+.+ |+.. .+ ...............+.|+++.|.+- +|..
T Consensus 6 ~isls~----~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~- 80 (415)
T PF14655_consen 6 SISLSP----DGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWT- 80 (415)
T ss_pred eEEecC----CCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcE-
Confidence 356777 789999998888332 4321 11 12222222222223367888777643 4556
Q ss_pred EEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeC
Q 019117 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQP 138 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 138 (346)
.++.|..+|.|++|.. +|..+..-.-|.++|..+.+..
T Consensus 81 ~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 81 CIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred EEEEEecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 9999999999999994 6776666666888888888754
No 347
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.98 E-value=0.00049 Score=61.18 Aligned_cols=69 Identities=12% Similarity=0.085 Sum_probs=53.7
Q ss_pred eEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEE
Q 019117 36 LYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVID 114 (346)
Q Consensus 36 v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd 114 (346)
+++++|+| ..-+||.|-.-+ +.+|...+.+...... .|..++..+.|+ ++|. .++++..-|.+.+|.
T Consensus 62 atSLCWHp----e~~vLa~gwe~g~~~v~~~~~~e~htv~~-----th~a~i~~l~wS--~~G~-~l~t~d~~g~v~lwr 129 (1416)
T KOG3617|consen 62 ATSLCWHP----EEFVLAQGWEMGVSDVQKTNTTETHTVVE-----THPAPIQGLDWS--HDGT-VLMTLDNPGSVHLWR 129 (1416)
T ss_pred hhhhccCh----HHHHHhhccccceeEEEecCCceeeeecc-----CCCCCceeEEec--CCCC-eEEEcCCCceeEEEE
Confidence 45799999 556788887777 8999865544333222 377888888888 9999 999999999999998
Q ss_pred cc
Q 019117 115 VS 116 (346)
Q Consensus 115 ~~ 116 (346)
..
T Consensus 130 ~d 131 (1416)
T KOG3617|consen 130 YD 131 (1416)
T ss_pred ee
Confidence 75
No 348
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=7.5e-05 Score=63.70 Aligned_cols=93 Identities=13% Similarity=0.193 Sum_probs=77.1
Q ss_pred ceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceE-EEEEeCCCCceEEEeeCCCCEEEEecCCCee
Q 019117 85 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSIN-EIRTQPLKPSLVVSASKDESVRLWNVQTGIC 163 (346)
Q Consensus 85 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 163 (346)
.+..+.|+ |.-. ++|.+..+|.|.+..++ .+.+.+++-|...++ +++|.| ++++|+.|-.||+|++.|+.++..
T Consensus 22 ~i~~~ewn--P~~d-LiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 22 NIKRIEWN--PKMD-LIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ceEEEEEc--Cccc-hhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCc
Confidence 34556776 6555 99999999999999988 778888887887787 999999 899999999999999999999988
Q ss_pred EEEecccCCCCcceEEEEecC
Q 019117 164 ILIFAGAGGHRNEVLSVDFHP 184 (346)
Q Consensus 164 ~~~~~~~~~~~~~v~~~~~~~ 184 (346)
+..+.. .....|.++-|.+
T Consensus 97 l~~~~~--s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLF--SVETDISKGIWDR 115 (665)
T ss_pred eecccc--ccccchheeeccc
Confidence 877321 2567788888875
No 349
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.87 E-value=0.0014 Score=59.47 Aligned_cols=142 Identities=11% Similarity=0.062 Sum_probs=91.6
Q ss_pred EEEEe-ecCCeEEEEEccCcceeeeeccCCCc-eEEEEEeC----CCCceEEEeeCCCCEEEEecCCCe--eEEEecccC
Q 019117 100 FLVAG-GINGIIRVIDVSNEKLHKSFVGHGDS-INEIRTQP----LKPSLVVSASKDESVRLWNVQTGI--CILIFAGAG 171 (346)
Q Consensus 100 ~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~----~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~ 171 (346)
+|+.- .....|+-.|+..|+.+.....|... |..++-.. ..+...+.|-.+..+..||.+-.. .+..-....
T Consensus 495 mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y 574 (794)
T PF08553_consen 495 MILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY 574 (794)
T ss_pred eEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc
Confidence 44443 45678999999999999999877654 55543321 123455667778899999998542 221111011
Q ss_pred CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--
Q 019117 172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-- 249 (346)
Q Consensus 172 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 249 (346)
.......|++-. ...+|+.|+.+|.||+||--. ......+.+-..+|..|..+
T Consensus 575 ~~~~~Fs~~aTt--~~G~iavgs~~G~IRLyd~~g-----------------------~~AKT~lp~lG~pI~~iDvt~D 629 (794)
T PF08553_consen 575 SSKNNFSCFATT--EDGYIAVGSNKGDIRLYDRLG-----------------------KRAKTALPGLGDPIIGIDVTAD 629 (794)
T ss_pred ccCCCceEEEec--CCceEEEEeCCCcEEeecccc-----------------------hhhhhcCCCCCCCeeEEEecCC
Confidence 234567788877 455699999999999998432 11222344556788888887
Q ss_pred CCEEEEEeecCeEEEEcC
Q 019117 250 GDFILSKSVDNEIVLWEP 267 (346)
Q Consensus 250 ~~~l~~~~~d~~i~iwd~ 267 (346)
|+++++.+. ..+.+++.
T Consensus 630 GkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 630 GKWILATCK-TYLLLIDT 646 (794)
T ss_pred CcEEEEeec-ceEEEEEE
Confidence 887776654 45667765
No 350
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.87 E-value=0.013 Score=50.05 Aligned_cols=198 Identities=11% Similarity=0.038 Sum_probs=97.6
Q ss_pred eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEeccc----CCCCcceEEEEecC
Q 019117 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA----GGHRNEVLSVDFHP 184 (346)
Q Consensus 109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~ 184 (346)
.|.||+. .|+.+..+.-..+.+.++.|.. + ..|+....||.++++|+. |+....+... .-....+....+..
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~-~-e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTD-D-EELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECC-C-CeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCC
Confidence 5899984 5666666654448999999987 4 455566789999999986 4441111100 01112222223332
Q ss_pred CCCcEEEEEecCCeEEEEEccccceeee-eceeecCCCCCCCCccceeceEEEeeccc--ceEEEEecCCEEEEEeecCe
Q 019117 185 SDIYRIASCGMDNTVKIWSMKEFWTYVE-KSFTWTDLPSKFPTKYVQFPVFIASVHSN--YVDCNRWLGDFILSKSVDNE 261 (346)
Q Consensus 185 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~l~~~~~d~~ 261 (346)
+|-.+++ .++.+.+ +.+...... +... ..+. .......+.. .+..+.-.....+....++.
T Consensus 138 -~GivvLt--~~~~~~~--v~n~~~~~~~~~~~--~~p~---------~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~ 201 (410)
T PF04841_consen 138 -NGIVVLT--GNNRFYV--VNNIDEPVKLRRLP--EIPG---------LWTKFHWWPSWTVIPLLSSDRVVEILLANGET 201 (410)
T ss_pred -CCEEEEC--CCCeEEE--EeCccccchhhccc--cCCC---------cccccccccccccceEeecCcceEEEEecCCE
Confidence 4433333 3344333 333221100 0000 0000 0000000111 01111111334444445556
Q ss_pred EEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee--eeEEEEE
Q 019117 262 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI--CFSLHVK 339 (346)
Q Consensus 262 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~ 339 (346)
+.+.+-...+ . +. ..+++..|+.||++ +++|.-..+|.+.+....-.+....+... ..+..+.
T Consensus 202 i~~i~~~~~~---------~---i~-~~~~i~~iavSpng--~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~ 266 (410)
T PF04841_consen 202 IYIIDENSFK---------Q---ID-SDGPIIKIAVSPNG--KFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMA 266 (410)
T ss_pred EEEEEccccc---------c---cc-CCCCeEEEEECCCC--CEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEE
Confidence 6644433211 1 11 23589999999999 68888888999988876555444444444 3344444
Q ss_pred ec
Q 019117 340 YN 341 (346)
Q Consensus 340 ~s 341 (346)
|-
T Consensus 267 WC 268 (410)
T PF04841_consen 267 WC 268 (410)
T ss_pred EE
Confidence 43
No 351
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.87 E-value=5e-05 Score=40.02 Aligned_cols=38 Identities=29% Similarity=0.632 Sum_probs=33.0
Q ss_pred ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEe
Q 019117 119 KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 157 (346)
Q Consensus 119 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 157 (346)
+....+..|...|.++.|.+ ....+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 45566677889999999999 778999999999999996
No 352
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.86 E-value=0.0076 Score=53.00 Aligned_cols=205 Identities=13% Similarity=0.064 Sum_probs=108.1
Q ss_pred ccEEEEEcCCcEEEEEeccCceeeeEeeeecCC-CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccC
Q 019117 49 FNVFATVGGNRVTVYQCLEGGVIAALQSYVDED-KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH 127 (346)
Q Consensus 49 ~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 127 (346)
+.+++....+.+.-+|..+++.+.......... ....+....... .++. .++.++.++.|..+|.++++.+..+...
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-~~~~-~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-WDPR-KVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-ccCC-eEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 344444444449999998888766554321100 000000000111 1213 6888888999999999999998877643
Q ss_pred CCc-----e-EEEEEeCCCCceEEEee---------CCCCEEEEecCCCeeEEEecccCCCC-----------------c
Q 019117 128 GDS-----I-NEIRTQPLKPSLVVSAS---------KDESVRLWNVQTGICILIFAGAGGHR-----------------N 175 (346)
Q Consensus 128 ~~~-----v-~~~~~~~~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~-----------------~ 175 (346)
... + ....+. + ..++.++ .++.+..+|..+|+.+..+....... .
T Consensus 140 ~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG 216 (488)
T ss_pred CCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence 221 1 112222 2 3444543 36789999999999988876311100 0
Q ss_pred ce-EEEEecCCCCcEEEEEecCC------------------eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE
Q 019117 176 EV-LSVDFHPSDIYRIASCGMDN------------------TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 236 (346)
Q Consensus 176 ~v-~~~~~~~~~~~~l~s~~~d~------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (346)
.+ ...++.+ .+.+++.++.++ .|.-+|+.+++..-........ ...+
T Consensus 217 ~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~-------------~~~~ 282 (488)
T cd00216 217 TSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHD-------------LWDY 282 (488)
T ss_pred CccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCC-------------Cccc
Confidence 01 1234444 455677776554 6888888875543322110000 0000
Q ss_pred eeccc-ceEEEE-ecCC---EEEEEeecCeEEEEcCCCCCC
Q 019117 237 SVHSN-YVDCNR-WLGD---FILSKSVDNEIVLWEPKMKEQ 272 (346)
Q Consensus 237 ~~~~~-~i~~~~-~~~~---~l~~~~~d~~i~iwd~~~~~~ 272 (346)
..... .+..+. .++. .++.++.+|.+...|..+++.
T Consensus 283 ~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~ 323 (488)
T cd00216 283 DGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL 323 (488)
T ss_pred ccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE
Confidence 00000 011111 1232 577788899999999999874
No 353
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.85 E-value=0.0066 Score=53.34 Aligned_cols=156 Identities=12% Similarity=0.088 Sum_probs=89.7
Q ss_pred CCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEee--------------------------
Q 019117 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS-------------------------- 148 (346)
Q Consensus 95 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-------------------------- 148 (346)
|||+....+.-..+.+.+.|.++.+....+.-- +....++++| ++.++++.+
T Consensus 202 nDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 202 NDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred CCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 466522233334567778888776666555422 2345666777 555554443
Q ss_pred --------------CCCCEEEEecCC-----CeeEEEecccCCCCcceEEEEecCCCCcEE-EEEecCCeEEEEEccccc
Q 019117 149 --------------KDESVRLWNVQT-----GICILIFAGAGGHRNEVLSVDFHPSDIYRI-ASCGMDNTVKIWSMKEFW 208 (346)
Q Consensus 149 --------------~d~~i~iwd~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~ 208 (346)
.++.|.+.|..+ .+.+..+. -......+.++| +++++ +++..+.+|.+.|+.+.+
T Consensus 280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP----VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP----VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE----CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhh
Confidence 124577777776 34455554 566778899999 66555 455568899999999855
Q ss_pred eeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCC
Q 019117 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKM 269 (346)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~ 269 (346)
......... .......... ...-...+|+ |+...+--.|..|..||+..
T Consensus 355 ~~~~~~~~~-----------~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 355 DLFDGKIKP-----------RDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhccCCc-----------cceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 322111000 0001111111 1122334555 56677777799999999876
No 354
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.75 E-value=0.00013 Score=38.35 Aligned_cols=38 Identities=37% Similarity=0.567 Sum_probs=32.2
Q ss_pred eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEE
Q 019117 162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 203 (346)
Q Consensus 162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 203 (346)
+++..+. .|...|.++.|++ .+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~---~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLK---GHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEE---ecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 4455565 6888999999998 778999999999999996
No 355
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.73 E-value=3.9e-05 Score=57.19 Aligned_cols=141 Identities=11% Similarity=-0.045 Sum_probs=77.9
Q ss_pred eEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCC
Q 019117 143 LVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPS 222 (346)
Q Consensus 143 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 222 (346)
.+...+.||.|.-++++..+....- ...+.+..--+.....++.|+.+|.|.+|..........
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rs------e~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d---------- 95 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRS------ERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSD---------- 95 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhh------hhhhhcceeecccCceEEeecccceEEEecCCccchHHH----------
Confidence 4445567888888887643321111 111111111112456799999999999998874211100
Q ss_pred CCCCccceeceEEEeecccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCC-cCeeEEEEe
Q 019117 223 KFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE-CDIWFIKFS 298 (346)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s 298 (346)
....-...|.+.... +.+..+++.||.|+.|++.-.+ .+.....|. .++..+..+
T Consensus 96 ------------~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k---------~~g~~g~h~~~~~e~~ivv 154 (238)
T KOG2444|consen 96 ------------RVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK---------VLGYVGQHNFESGEELIVV 154 (238)
T ss_pred ------------hhhcccccceeccccccccceeEEeccCCceeeeccccCc---------eeeeeccccCCCcceeEEe
Confidence 111112223333333 4588999999999999998776 333333344 344444444
Q ss_pred ecCCcceEEEE--cCCCcEEEEEcCC
Q 019117 299 CDFHYNAAAIG--NREGKIFVWELQS 322 (346)
Q Consensus 299 ~~~~~~~l~~~--~~dg~i~iwd~~~ 322 (346)
..+ ++++.. |.|..++.|++..
T Consensus 155 ~sd--~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 155 GSD--EFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cCC--ceEEeeccccchhhhhcchhh
Confidence 444 355555 6666777777654
No 356
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.73 E-value=0.0049 Score=56.07 Aligned_cols=148 Identities=10% Similarity=0.014 Sum_probs=95.3
Q ss_pred CCceEEE-eeCCCCEEEEecCCCeeEEEecccCCCC-cceEEEEecC----CCCcEEEEEecCCeEEEEEccccceeeee
Q 019117 140 KPSLVVS-ASKDESVRLWNVQTGICILIFAGAGGHR-NEVLSVDFHP----SDIYRIASCGMDNTVKIWSMKEFWTYVEK 213 (346)
Q Consensus 140 ~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~----~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 213 (346)
+.++|+. ......|+-.|++.|+.+..+.. +. .+|..++-.. -.....+.|-.+..+..||.|-....+.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~---~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v- 567 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKV---HDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV- 567 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeec---CCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCcee-
Confidence 3344443 34567899999999999999983 43 3365554321 0234567778889999999996221000
Q ss_pred ceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCe
Q 019117 214 SFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDI 292 (346)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 292 (346)
......+ ......+|++-. ..+||+|+.+|.||+||-- ++. ....+++-..+|
T Consensus 568 ----------------~~~~k~Y-~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~--------AKT~lp~lG~pI 621 (794)
T PF08553_consen 568 ----------------DSQSKQY-SSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKR--------AKTALPGLGDPI 621 (794)
T ss_pred ----------------ecccccc-ccCCCceEEEecCCceEEEEeCCCcEEeeccc-chh--------hhhcCCCCCCCe
Confidence 0001111 233446677666 6799999999999999943 221 334455556899
Q ss_pred eEEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117 293 WFIKFSCDFHYNAAAIGNREGKIFVWEL 320 (346)
Q Consensus 293 ~~~~~s~~~~~~~l~~~~~dg~i~iwd~ 320 (346)
.+|..+.|| +++++.+. ..|.+++.
T Consensus 622 ~~iDvt~DG--kwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 622 IGIDVTADG--KWILATCK-TYLLLIDT 646 (794)
T ss_pred eEEEecCCC--cEEEEeec-ceEEEEEE
Confidence 999999999 56665554 46777775
No 357
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.71 E-value=0.013 Score=45.68 Aligned_cols=247 Identities=18% Similarity=0.184 Sum_probs=128.6
Q ss_pred EEEEEeecCCCccEEEEEcCCc--EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec-----CCeE
Q 019117 38 AVVFNFIDSRYFNVFATVGGNR--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI-----NGII 110 (346)
Q Consensus 38 ~~~~~p~~~~~~~~la~~~~~~--v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~-----dg~i 110 (346)
.|+|+|.. ..-++.+-.-+ ..++|....+....+... .+...+.- -.|+|||. +|...-+ .|.|
T Consensus 72 gi~~~p~~---~ravafARrPGtf~~vfD~~~~~~pv~~~s~----~~RHfyGH-Gvfs~dG~-~LYATEndfd~~rGVi 142 (366)
T COG3490 72 GIAFHPAL---PRAVAFARRPGTFAMVFDPNGAQEPVTLVSQ----EGRHFYGH-GVFSPDGR-LLYATENDFDPNRGVI 142 (366)
T ss_pred CeecCCCC---cceEEEEecCCceEEEECCCCCcCcEEEecc----cCceeecc-cccCCCCc-EEEeecCCCCCCCceE
Confidence 57888833 35566666555 889998887776665532 11222222 13669998 7776543 3789
Q ss_pred EEEEccCc-ceeeeeccCCCceEEEEEeCCCCceEEEeeC-------CC-----------CEEEEecCCCeeEEEeccc-
Q 019117 111 RVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASK-------DE-----------SVRLWNVQTGICILIFAGA- 170 (346)
Q Consensus 111 ~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-------d~-----------~i~iwd~~~~~~~~~~~~~- 170 (346)
-|||.+.+ +.+..+..|.-.-..+.+.+ ++..++.+.. -| ++.+.|..+|+.+.+....
T Consensus 143 GvYd~r~~fqrvgE~~t~GiGpHev~lm~-DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~ 221 (366)
T COG3490 143 GVYDAREGFQRVGEFSTHGIGPHEVTLMA-DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPA 221 (366)
T ss_pred EEEecccccceecccccCCcCcceeEEec-CCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCch
Confidence 99998754 45667788887888999999 7777776532 01 1223333344443332211
Q ss_pred CCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-
Q 019117 171 GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL- 249 (346)
Q Consensus 171 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 249 (346)
..+.-.|+.++..+ ++..++-+-..|.-. |+.. .+. -.....+.+....+......-.+.|-+++.+
T Consensus 222 ~l~~lSiRHld~g~-dgtvwfgcQy~G~~~--d~pp---Lvg------~~~~g~~l~~~~~pee~~~~~anYigsiA~n~ 289 (366)
T COG3490 222 SLRQLSIRHLDIGR-DGTVWFGCQYRGPRN--DLPP---LVG------HFRKGEPLEFLDLPEEQTAAFANYIGSIAANR 289 (366)
T ss_pred hhhhcceeeeeeCC-CCcEEEEEEeeCCCc--cCCc---cee------eccCCCcCcccCCCHHHHHHHHhhhhheeecc
Confidence 02334566777665 555444443222100 0000 000 0000000011111111111223456667766
Q ss_pred --CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117 250 --GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (346)
Q Consensus 250 --~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~ 321 (346)
+-..+++-..+...+||..++.. +...... ....++-...+ +++.+.+|.+.++.-.
T Consensus 290 ~~glV~lTSP~GN~~vi~da~tG~v---------v~~a~l~--daaGva~~~~g----f~vssg~G~~~~~s~~ 348 (366)
T COG3490 290 RDGLVALTSPRGNRAVIWDAATGAV---------VSEAALP--DAAGVAAAKGG----FAVSSGQGRIIFYSRA 348 (366)
T ss_pred cCCeEEEecCCCCeEEEEEcCCCcE---------Eeccccc--ccccceeccCc----eEEecCCceEEecccc
Confidence 34556666678899999999872 2211111 12223333333 6666778888887433
No 358
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00018 Score=61.54 Aligned_cols=91 Identities=13% Similarity=0.191 Sum_probs=72.7
Q ss_pred ccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCee-EEEEeecCCcceEEEEcCCCcEE
Q 019117 240 SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIW-FIKFSCDFHYNAAAIGNREGKIF 316 (346)
Q Consensus 240 ~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~~~l~~~~~dg~i~ 316 (346)
+..|.-+.|+ -+++|.+..+|.|.+..++ .+ .+..++.|...++ +++|.||| ++||.|-.||+|+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~q---------Rlwtip~p~~~v~~sL~W~~DG--kllaVg~kdG~I~ 87 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQ---------RLWTIPIPGENVTASLCWRPDG--KLLAVGFKDGTIR 87 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cc---------eeEeccCCCCccceeeeecCCC--CEEEEEecCCeEE
Confidence 3456677787 5689999999999999988 43 4666776666777 99999999 8999999999999
Q ss_pred EEEcCCCCccee--eeeeeeEEEEEecC
Q 019117 317 VWELQSSPPVLI--ARLICFSLHVKYNP 342 (346)
Q Consensus 317 iwd~~~~~~~~~--~~~~~~~~~~~~sp 342 (346)
+-|++++..+.. +.....+.++-|+|
T Consensus 88 L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 88 LHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EEEccCCCceeccccccccchheeeccc
Confidence 999999987766 45555677777764
No 359
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.69 E-value=0.019 Score=46.41 Aligned_cols=152 Identities=14% Similarity=0.094 Sum_probs=90.8
Q ss_pred CCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEec-------
Q 019117 96 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA------- 168 (346)
Q Consensus 96 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------- 168 (346)
.++ .|+.|..+| +.+++.........+. +...|..+...| +-+.+++-+ |+.+.++++..-.......
T Consensus 6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 6 WGD-RLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred CCC-EEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 455 899999888 8999983332222222 233499999999 666666665 4999999987554433110
Q ss_pred ----ccCCCCcceEEEE-ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce
Q 019117 169 ----GAGGHRNEVLSVD-FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV 243 (346)
Q Consensus 169 ----~~~~~~~~v~~~~-~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 243 (346)
........+...+ -....+...+.......|.+|.......... .....+ .-+..+
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~------------------~~~ke~-~lp~~~ 141 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS------------------KLLKEI-SLPDPP 141 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc------------------ceeEEE-EcCCCc
Confidence 0001233444444 1112344444455566999988876211000 112222 234778
Q ss_pred EEEEecCCEEEEEeecCeEEEEcCCCCCC
Q 019117 244 DCNRWLGDFILSKSVDNEIVLWEPKMKEQ 272 (346)
Q Consensus 244 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 272 (346)
.++.|.++.++.|..++ ..+.|+.++..
T Consensus 142 ~~i~~~~~~i~v~~~~~-f~~idl~~~~~ 169 (275)
T PF00780_consen 142 SSIAFLGNKICVGTSKG-FYLIDLNTGSP 169 (275)
T ss_pred EEEEEeCCEEEEEeCCc-eEEEecCCCCc
Confidence 89999988888887654 77889987653
No 360
>PHA02713 hypothetical protein; Provisional
Probab=97.68 E-value=0.011 Score=52.93 Aligned_cols=192 Identities=10% Similarity=0.092 Sum_probs=95.0
Q ss_pred CCCCcEEEEeecC------CeEEEEEccCcce--eeeeccCCCceEEEEEeCCCCceEEEeeCCC-----CEEEEecCCC
Q 019117 95 VDGIPFLVAGGIN------GIIRVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSASKDE-----SVRLWNVQTG 161 (346)
Q Consensus 95 ~~~~~~l~~~~~d------g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~ 161 (346)
.++. +++.|+.+ ..+..||..+.+- +..+....... +++.. ++.+.+.||.++ .+..||..+.
T Consensus 302 l~~~-IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~ 377 (557)
T PHA02713 302 VDNE-IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAVI--DDTIYAIGGQNGTNVERTIECYTMGDD 377 (557)
T ss_pred ECCE-EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEEE--CCEEEEECCcCCCCCCceEEEEECCCC
Confidence 3555 77777743 3477888776542 22222111122 22222 567778888764 4788998765
Q ss_pred eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCC-----------------------eEEEEEccccceeeeeceeec
Q 019117 162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-----------------------TVKIWSMKEFWTYVEKSFTWT 218 (346)
Q Consensus 162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-----------------------~i~iwd~~~~~~~~~~~~~~~ 218 (346)
+-.. +.......... +++.. ++.+.+.||.++ .+..||..+.+ |.
T Consensus 378 ~W~~-~~~mp~~r~~~-~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~--------W~ 445 (557)
T PHA02713 378 KWKM-LPDMPIALSSY-GMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI--------WE 445 (557)
T ss_pred eEEE-CCCCCcccccc-cEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe--------Ee
Confidence 4322 21100111111 22222 677777777653 35556665521 11
Q ss_pred CCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeec------CeEEEEcCCC-CCCCCCCccccccccccCCCcC
Q 019117 219 DLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVD------NEIVLWEPKM-KEQSPGEGTADILQKYPVPECD 291 (346)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d------~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~ 291 (346)
..+ .+.........+.+.+...+.|+.+ ..+..||..+ .+ ...+..++.+...
T Consensus 446 ~v~-------------~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~-------W~~~~~m~~~r~~ 505 (557)
T PHA02713 446 TLP-------------NFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG-------WELITTTESRLSA 505 (557)
T ss_pred ecC-------------CCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCC-------eeEccccCccccc
Confidence 000 0100001111223336666667654 2467888887 33 1223333322222
Q ss_pred eeEEEEeecCCcceEEEEcCCC--cEEEEEcCCCCcc
Q 019117 292 IWFIKFSCDFHYNAAAIGNREG--KIFVWELQSSPPV 326 (346)
Q Consensus 292 v~~~~~s~~~~~~~l~~~~~dg--~i~iwd~~~~~~~ 326 (346)
...+. -++ .+.++|+.|| .+..||..+.+-.
T Consensus 506 ~~~~~--~~~--~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 506 LHTIL--HDN--TIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred ceeEE--ECC--EEEEEeeecceeehhhcCccccccc
Confidence 22222 245 6888898888 7888998887643
No 361
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.67 E-value=0.0029 Score=53.97 Aligned_cols=194 Identities=13% Similarity=0.086 Sum_probs=101.6
Q ss_pred eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEe-eCC---CCEEEEecCCCeeEEEecccCCCCcceEEEEecC
Q 019117 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSA-SKD---ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP 184 (346)
Q Consensus 109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 184 (346)
.+.+-|.+ +.....+......+..-+|+| ++..++-. -.. ..+.++|+.+++...... ..+.-..-+|+|
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~----~~g~~~~P~fsp 247 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN----FNGNNGAPAFSP 247 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeec----cCCccCCccCCC
Confidence 44444443 444445544556677788998 55543322 222 358999999887766654 344455677999
Q ss_pred CCCcEEEEEecCCeEEE--EEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE-EEEec--CCEEEEEe-e
Q 019117 185 SDIYRIASCGMDNTVKI--WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD-CNRWL--GDFILSKS-V 258 (346)
Q Consensus 185 ~~~~~l~s~~~d~~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~--~~~l~~~~-~ 258 (346)
++..++++...||...+ .|+.... ...+. +...+. .=.|+ |+.++-.+ .
T Consensus 248 DG~~l~f~~~rdg~~~iy~~dl~~~~------------------------~~~Lt-~~~gi~~~Ps~spdG~~ivf~Sdr 302 (425)
T COG0823 248 DGSKLAFSSSRDGSPDIYLMDLDGKN------------------------LPRLT-NGFGINTSPSWSPDGSKIVFTSDR 302 (425)
T ss_pred CCCEEEEEECCCCCccEEEEcCCCCc------------------------ceecc-cCCccccCccCCCCCCEEEEEeCC
Confidence 56666677777886555 4555521 11111 111111 11222 66655544 4
Q ss_pred cCe--EEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc-CCCc--EEEEEcCCCCcceeeeeee
Q 019117 259 DNE--IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-REGK--IFVWELQSSPPVLIARLIC 333 (346)
Q Consensus 259 d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~ 333 (346)
.|. |.+.+++.... ..+......-..-.|+|||. +++..+ .+|. |.+.|+.++..........
T Consensus 303 ~G~p~I~~~~~~g~~~----------~riT~~~~~~~~p~~SpdG~--~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~ 370 (425)
T COG0823 303 GGRPQIYLYDLEGSQV----------TRLTFSGGGNSNPVWSPDGD--KIVFESSSGGQWDIDKNDLASGGKIRILTSTY 370 (425)
T ss_pred CCCcceEEECCCCCce----------eEeeccCCCCcCccCCCCCC--EEEEEeccCCceeeEEeccCCCCcEEEccccc
Confidence 555 45555555431 22221111222557999994 555444 3454 7777777665333333333
Q ss_pred eEEEEEecCCCC
Q 019117 334 FSLHVKYNPQSV 345 (346)
Q Consensus 334 ~~~~~~~spdg~ 345 (346)
....-.|.|+|+
T Consensus 371 ~~e~ps~~~ng~ 382 (425)
T COG0823 371 LNESPSWAPNGR 382 (425)
T ss_pred cCCCCCcCCCCc
Confidence 333456666665
No 362
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.65 E-value=0.0046 Score=53.00 Aligned_cols=144 Identities=15% Similarity=0.157 Sum_probs=77.4
Q ss_pred CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEE-Ecc
Q 019117 127 HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW-SMK 205 (346)
Q Consensus 127 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iw-d~~ 205 (346)
.......+.++| +++.++.++ ||.-.++.....+... .+.-..++|.+ ++. +++-...++|.++ ++.
T Consensus 31 ~~~~p~~ls~np-ngr~v~V~g-~geY~iyt~~~~r~k~--------~G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 31 CEIYPQSLSHNP-NGRFVLVCG-DGEYEIYTALAWRNKA--------FGSGLSFVWSS-RNR-YAVLESSSTIKIYKNFK 98 (443)
T ss_dssp -SS--SEEEE-T-TSSEEEEEE-TTEEEEEETTTTEEEE--------EEE-SEEEE-T-SSE-EEEE-TTS-EEEEETTE
T ss_pred CCcCCeeEEECC-CCCEEEEEc-CCEEEEEEccCCcccc--------cCceeEEEEec-Ccc-EEEEECCCeEEEEEcCc
Confidence 444578999999 888888755 6777788744333322 23445688986 555 6666668889996 332
Q ss_pred ccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccc
Q 019117 206 EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY 285 (346)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 285 (346)
. .....+.. +..+..+.. |.+|...+.+ .|.+||..+++ .+.++
T Consensus 99 ~------------------------~~~k~i~~-~~~~~~If~-G~LL~~~~~~-~i~~yDw~~~~---------~i~~i 142 (443)
T PF04053_consen 99 N------------------------EVVKSIKL-PFSVEKIFG-GNLLGVKSSD-FICFYDWETGK---------LIRRI 142 (443)
T ss_dssp E-------------------------TT------SS-EEEEE--SSSEEEEETT-EEEEE-TTT-----------EEEEE
T ss_pred c------------------------ccceEEcC-CcccceEEc-CcEEEEECCC-CEEEEEhhHcc---------eeeEE
Confidence 2 01011111 111222222 6666666544 89999999887 66666
Q ss_pred cCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117 286 PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (346)
Q Consensus 286 ~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (346)
... +|..+.|++++ .+++..+.+ .+.|++....
T Consensus 143 ~v~--~vk~V~Ws~~g--~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 143 DVS--AVKYVIWSDDG--ELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp SS---E-EEEEE-TTS--SEEEEE-S--SEEEEEE-HH
T ss_pred ecC--CCcEEEEECCC--CEEEEEeCC-eEEEEEecch
Confidence 643 48899999998 577777655 6778765544
No 363
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.62 E-value=0.017 Score=51.59 Aligned_cols=231 Identities=11% Similarity=0.073 Sum_probs=118.7
Q ss_pred CccEEEEEcCCc-------EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC------CeEEEEE
Q 019117 48 YFNVFATVGGNR-------VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN------GIIRVID 114 (346)
Q Consensus 48 ~~~~la~~~~~~-------v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d------g~i~iwd 114 (346)
.+.+++.|+..+ +..||..++....... .. ......+++. .+|. +.++|+.| .++..||
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~-m~---~~r~~~~~~~---~~~~-lYv~GG~~~~~~~l~~ve~YD 355 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAP-MP---SPRCRVGVAV---LNGK-LYVVGGYDSGSDRLSSVERYD 355 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCC-CC---cccccccEEE---ECCE-EEEEccccCCCcccceEEEec
Confidence 356777777651 7788877664322211 11 1222222333 3455 88888888 3577888
Q ss_pred ccCcceee--eeccCCCceEEEEEeCCCCceEEEeeCCCC-----EEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117 115 VSNEKLHK--SFVGHGDSINEIRTQPLKPSLVVSASKDES-----VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI 187 (346)
Q Consensus 115 ~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~-----i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 187 (346)
..+.+-.. .+....... .++.. ++.+.+.|+.||. +-.||..+.+--..-. ......+.....-++
T Consensus 356 ~~~~~W~~~a~M~~~R~~~-~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~----m~~~r~~~gv~~~~g 428 (571)
T KOG4441|consen 356 PRTNQWTPVAPMNTKRSDF-GVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP----MLTRRSGHGVAVLGG 428 (571)
T ss_pred CCCCceeccCCccCccccc-eeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCC----CCcceeeeEEEEECC
Confidence 77665222 222121222 22222 6788899998864 6777776554322211 111222222222267
Q ss_pred cEEEEEecCC------eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecC-
Q 019117 188 YRIASCGMDN------TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDN- 260 (346)
Q Consensus 188 ~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~- 260 (346)
.+.+.||.++ ++..||..+..-... ..+..-.........++.+.+.||.|+
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~---------------------~~M~~~R~~~g~a~~~~~iYvvGG~~~~ 487 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLI---------------------APMNTRRSGFGVAVLNGKIYVVGGFDGT 487 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCCceeec---------------------CCcccccccceEEEECCEEEEECCccCC
Confidence 8888888654 566777776321111 011111111123333467778888776
Q ss_pred ----eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCC-----cEEEEEcCCCCc
Q 019117 261 ----EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG-----KIFVWELQSSPP 325 (346)
Q Consensus 261 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg-----~i~iwd~~~~~~ 325 (346)
+|..||..+.+- ..+.........+ .....+. .+.++|+.|| +|..||..+.+-
T Consensus 488 ~~~~~VE~ydp~~~~W-------~~v~~m~~~rs~~---g~~~~~~-~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 488 SALSSVERYDPETNQW-------TMVAPMTSPRSAV---GVVVLGG-KLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred CccceEEEEcCCCCce-------eEcccCccccccc---cEEEECC-EEEEEecccCccccceeEEcCCCCCce
Confidence 377788887652 1222222222222 2222222 5777888776 577787777653
No 364
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.046 Score=46.43 Aligned_cols=219 Identities=13% Similarity=0.071 Sum_probs=124.3
Q ss_pred EcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCC
Q 019117 93 CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGG 172 (346)
Q Consensus 93 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 172 (346)
..+++....++-.....+...+............-...-..++.++.+.+.++....+..|.+.|..+.+.+....
T Consensus 38 ~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~---- 113 (381)
T COG3391 38 VNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIP---- 113 (381)
T ss_pred EcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEee----
Confidence 3367752333333333555555442222222221113345778888455566777677999999988777777765
Q ss_pred CCcceEEEEecCCCCcEEEEEec---CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec
Q 019117 173 HRNEVLSVDFHPSDIYRIASCGM---DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL 249 (346)
Q Consensus 173 ~~~~v~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 249 (346)
-......++++| ++..+..+.. ++++.+.|..+... ......-..+ ..++++
T Consensus 114 vG~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~-----------------------~~~~~vG~~P-~~~a~~ 168 (381)
T COG3391 114 VGLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKV-----------------------TATIPVGNTP-TGVAVD 168 (381)
T ss_pred eccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeE-----------------------EEEEecCCCc-ceEEEC
Confidence 333778899999 5544444443 67888888877322 2222111122 556665
Q ss_pred --CCEEEEE-eecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC--CcEEEEEcCCCC
Q 019117 250 --GDFILSK-SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE--GKIFVWELQSSP 324 (346)
Q Consensus 250 --~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d--g~i~iwd~~~~~ 324 (346)
|+.++.. ..++.|.+.|........ ......+ ........+.++|++.. ..++...+ +.+...|..++.
T Consensus 169 p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~----~~~~~P~~i~v~~~g~~-~yV~~~~~~~~~v~~id~~~~~ 242 (381)
T COG3391 169 PDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLV----GVGTGPAGIAVDPDGNR-VYVANDGSGSNNVLKIDTATGN 242 (381)
T ss_pred CCCCeEEEEecCCCeEEEEeCCCcceec-ccccccc----ccCCCCceEEECCCCCE-EEEEeccCCCceEEEEeCCCce
Confidence 6655444 478999999977664221 0000011 11224466889999952 33333333 689999998876
Q ss_pred ccee-eeeee-eEEEEEecCCCCC
Q 019117 325 PVLI-ARLIC-FSLHVKYNPQSVY 346 (346)
Q Consensus 325 ~~~~-~~~~~-~~~~~~~spdg~~ 346 (346)
.... ..... ....+..+|+|++
T Consensus 243 v~~~~~~~~~~~~~~v~~~p~g~~ 266 (381)
T COG3391 243 VTATDLPVGSGAPRGVAVDPAGKA 266 (381)
T ss_pred EEEeccccccCCCCceeECCCCCE
Confidence 5443 22222 3456788888863
No 365
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.49 E-value=0.0041 Score=52.49 Aligned_cols=141 Identities=14% Similarity=0.154 Sum_probs=81.7
Q ss_pred ceEEEEecCCCCcEEEEEecCCeEEEEEccccceee--eecee---------ecCCCC---------CCCCccceeceEE
Q 019117 176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYV--EKSFT---------WTDLPS---------KFPTKYVQFPVFI 235 (346)
Q Consensus 176 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~---------~~~~~~---------~~~~~~~~~~~~~ 235 (346)
.|+.+.|.+ +...|+.+...|.|.+|.....+... ..... ....+. ....+..-.|...
T Consensus 3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 578899998 77778999999999999887744332 00000 000000 0111222345566
Q ss_pred EeecccceEEEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCcccccccc--c-cCCCcCeeEEEEee---cCC---cce
Q 019117 236 ASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQK--Y-PVPECDIWFIKFSC---DFH---YNA 305 (346)
Q Consensus 236 ~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~-~~~~~~v~~~~~s~---~~~---~~~ 305 (346)
+....+.|++++.+ =.+++.|..+|.+.|.|++........ .+.. . ......++++.|+. +++ .-.
T Consensus 82 ~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~----~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~ 157 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNE----NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC 157 (395)
T ss_dssp E---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEE----EGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred eeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeec----cccccccccccccCeeEEEEEEEecCCCcccceE
Confidence 66678999999998 679999999999999999876532111 1111 1 11345688888874 221 147
Q ss_pred EEEEcCCCcEEEEEcC
Q 019117 306 AAIGNREGKIFVWELQ 321 (346)
Q Consensus 306 l~~~~~dg~i~iwd~~ 321 (346)
|++|...|.+.+|.+.
T Consensus 158 L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 158 LLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEETTSEEEEEEEE
T ss_pred EEEEeCCCCEEEEEEe
Confidence 8889999999999885
No 366
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.01 Score=50.33 Aligned_cols=139 Identities=13% Similarity=0.155 Sum_probs=89.3
Q ss_pred EEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCC------CceEEEeeCCCCEEEEecCCCee--EEEecccC
Q 019117 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLK------PSLVVSASKDESVRLWNVQTGIC--ILIFAGAG 171 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~ 171 (346)
+|.++.....++-.|++.|+.+...+-+.+ |+.+.+.|+. ...-+.|-.|..|+-||++-... +..-+
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q--- 423 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ--- 423 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee---
Confidence 455566667788899999999998887766 7888888731 12234466678899999983322 11111
Q ss_pred CC----CcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEE
Q 019117 172 GH----RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR 247 (346)
Q Consensus 172 ~~----~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 247 (346)
+| .....|.+-. +..+++.|+.+|-|++||--. ......+++-...|..+.
T Consensus 424 ~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~-----------------------~~AKTAlPgLG~~I~hVd 478 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIG-----------------------RRAKTALPGLGDAIKHVD 478 (644)
T ss_pred ccccccccccceeeec--CCceEEEeecCCcEEeehhhh-----------------------hhhhhcccccCCceeeEE
Confidence 22 2345566655 456799999999999999743 112233445566677666
Q ss_pred ec--CCEEEEEeecCeEEEEcCC
Q 019117 248 WL--GDFILSKSVDNEIVLWEPK 268 (346)
Q Consensus 248 ~~--~~~l~~~~~d~~i~iwd~~ 268 (346)
.. |++++..+ +..+.+-++.
T Consensus 479 vtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 479 VTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred eeccCcEEEEec-ccEEEEEEEe
Confidence 65 77666554 4455555543
No 367
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.41 E-value=0.026 Score=47.46 Aligned_cols=184 Identities=13% Similarity=0.124 Sum_probs=96.2
Q ss_pred CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccC-----CC--------
Q 019117 107 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG-----GH-------- 173 (346)
Q Consensus 107 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~-------- 173 (346)
.+.+.++|+.+++....... ...+....|+| +++.++... ++.|.+++..+++..+.-.... |-
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE 98 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE 98 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHH
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccc
Confidence 46799999998775544443 66788999999 788888776 5789999988775443222110 00
Q ss_pred -CcceEEEEecCCCCcEEEEEe-cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--
Q 019117 174 -RNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-- 249 (346)
Q Consensus 174 -~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 249 (346)
-+.-..+.|+| +++.|+... .+..|..+.+........ ..+ .+..+.+-
T Consensus 99 v~~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~-----------------~yp---------~~~~~~YPk~ 151 (353)
T PF00930_consen 99 VFDRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDS-----------------QYP---------EVESIRYPKA 151 (353)
T ss_dssp TSSSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTE-----------------SS----------EEEEEE--BT
T ss_pred ccccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccc-----------------cCC---------cccccccCCC
Confidence 11235688999 666666554 445566665554211000 000 11122221
Q ss_pred CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEE-EcC---CCcEEEEEcCCCCc
Q 019117 250 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI-GNR---EGKIFVWELQSSPP 325 (346)
Q Consensus 250 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~-~~~---dg~i~iwd~~~~~~ 325 (346)
|.-.. .-.+.|+|+.+++.... .....+.....-+..+.|+++++ .+++. ... .-.+.+.|..++..
T Consensus 152 G~~np----~v~l~v~~~~~~~~~~~----~~~~~~~~~~~yl~~v~W~~d~~-~l~~~~~nR~q~~~~l~~~d~~tg~~ 222 (353)
T PF00930_consen 152 GDPNP----RVSLFVVDLASGKTTEL----DPPNSLNPQDYYLTRVGWSPDGK-RLWVQWLNRDQNRLDLVLCDASTGET 222 (353)
T ss_dssp TS-------EEEEEEEESSSTCCCEE-------HHHHTSSEEEEEEEEEETTE-EEEEEEEETTSTEEEEEEEEECTTTC
T ss_pred CCcCC----ceEEEEEECCCCcEEEe----eeccccCCCccCcccceecCCCc-EEEEEEcccCCCEEEEEEEECCCCce
Confidence 22221 12467788877763210 01111223345688999999984 13332 222 22567778877765
Q ss_pred ceee
Q 019117 326 VLIA 329 (346)
Q Consensus 326 ~~~~ 329 (346)
....
T Consensus 223 ~~~~ 226 (353)
T PF00930_consen 223 RVVL 226 (353)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 4433
No 368
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.41 E-value=0.07 Score=46.08 Aligned_cols=243 Identities=11% Similarity=0.082 Sum_probs=122.0
Q ss_pred EEEEEEeecCCCccEEEEEc----CCc--EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC---
Q 019117 37 YAVVFNFIDSRYFNVFATVG----GNR--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN--- 107 (346)
Q Consensus 37 ~~~~~~p~~~~~~~~la~~~----~~~--v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d--- 107 (346)
....+|| +++++|.+- ++. ++++|+.+++.+...-. ......+.|. ++++.++.+...+
T Consensus 127 ~~~~~Sp----dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~------~~~~~~~~W~--~d~~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 127 GGFSVSP----DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE------NPKFSSVSWS--DDGKGFFYTRFDEDQR 194 (414)
T ss_dssp EEEEETT----TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE------EEESEEEEEC--TTSSEEEEEECSTTTS
T ss_pred eeeeECC----CCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc------ccccceEEEe--CCCCEEEEEEeCcccc
Confidence 3566777 778777552 222 99999999865543211 1111226666 8887445554322
Q ss_pred -------CeEEEEEccCccee--eeeccCCCc--eEEEEEeCCCCceEEE-eeCC---CCEEEEecCCC----eeEEEec
Q 019117 108 -------GIIRVIDVSNEKLH--KSFVGHGDS--INEIRTQPLKPSLVVS-ASKD---ESVRLWNVQTG----ICILIFA 168 (346)
Q Consensus 108 -------g~i~iwd~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~~l~s-~~~d---~~i~iwd~~~~----~~~~~~~ 168 (346)
..|..|.+.+.... ..+...... ...+..++ ++++++. .... ..+.+.++..+ .....+.
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~ 273 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS 273 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE
T ss_pred cccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe
Confidence 24777887766432 334433332 56888888 6666554 3332 34777788764 2333333
Q ss_pred ccCCCCcce-EEEEecCCCCcEEEEEec---CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc--c
Q 019117 169 GAGGHRNEV-LSVDFHPSDIYRIASCGM---DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN--Y 242 (346)
Q Consensus 169 ~~~~~~~~v-~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 242 (346)
.....+ ..+... ++.+++.... .+.|...++..... ......+..+.. .
T Consensus 274 ---~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~--------------------~~~~~~l~~~~~~~~ 328 (414)
T PF02897_consen 274 ---PREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSP--------------------AEWWTVLIPEDEDVS 328 (414)
T ss_dssp ---ESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSG--------------------GGEEEEEE--SSSEE
T ss_pred ---CCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEeccccccc--------------------ccceeEEcCCCCcee
Confidence 133333 334443 4545544432 35666667766321 001113444444 4
Q ss_pred eEEEEecCCEEEEEee-c--CeEEEEcCC-CCCCCCCCccccccccccC-CCcCeeEEEEeecCCcceEEEEc--CCCcE
Q 019117 243 VDCNRWLGDFILSKSV-D--NEIVLWEPK-MKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGN--REGKI 315 (346)
Q Consensus 243 i~~~~~~~~~l~~~~~-d--~~i~iwd~~-~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~l~~~~--~dg~i 315 (346)
+..+...+++|+.... + ..|+++++. ... ...... ..+.|..+...+++..-++...| .-+.+
T Consensus 329 l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~----------~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~ 398 (414)
T PF02897_consen 329 LEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE----------SREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTV 398 (414)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEEETT-TEE----------EEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEE
T ss_pred EEEEEEECCEEEEEEEECCccEEEEEECCCCcE----------EeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEE
Confidence 5566655665555543 3 358889988 432 222222 22345555545555422233333 34578
Q ss_pred EEEEcCCCCcce
Q 019117 316 FVWELQSSPPVL 327 (346)
Q Consensus 316 ~iwd~~~~~~~~ 327 (346)
+.||+.+++...
T Consensus 399 y~~d~~t~~~~~ 410 (414)
T PF02897_consen 399 YRYDLATGELTL 410 (414)
T ss_dssp EEEETTTTCEEE
T ss_pred EEEECCCCCEEE
Confidence 999999987543
No 369
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.0012 Score=60.37 Aligned_cols=103 Identities=13% Similarity=0.235 Sum_probs=74.0
Q ss_pred EEEEeecCCeEEEEEccCc-ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceE
Q 019117 100 FLVAGGINGIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 178 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 178 (346)
.++.|+..|.+-..|+... .+...-..-.++|++++|+. ++..++.|-.+|.|.+||+..++.++.+.........|.
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi 179 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI 179 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence 7889999999999987653 11122223467999999998 899999999999999999999999988874322223333
Q ss_pred EEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117 179 SVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (346)
Q Consensus 179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 206 (346)
.+.+.. ++..++++...|. +|.+.-
T Consensus 180 ~v~~t~-~nS~llt~D~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 180 FVGRTS-QNSKLLTSDTGGS--FWKLVF 204 (1206)
T ss_pred EEEEeC-CCcEEEEccCCCc--eEEEEe
Confidence 444443 5557888887776 565543
No 370
>PHA02713 hypothetical protein; Provisional
Probab=97.39 E-value=0.031 Score=50.02 Aligned_cols=188 Identities=11% Similarity=0.040 Sum_probs=93.0
Q ss_pred CccEEEEEcCC-------cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC-----eEEEEEc
Q 019117 48 YFNVFATVGGN-------RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING-----IIRVIDV 115 (346)
Q Consensus 48 ~~~~la~~~~~-------~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~ 115 (346)
++.+++.|+.+ .+..||..++.- ..+.... ....-.+++ . .+|+ +.+.|+.++ .+..||.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W-~~~~~m~---~~R~~~~~~-~--~~g~-IYviGG~~~~~~~~sve~Ydp 374 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIH-VELPPMI---KNRCRFSLA-V--IDDT-IYAIGGQNGTNVERTIECYTM 374 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeE-eeCCCCc---chhhceeEE-E--ECCE-EEEECCcCCCCCCceEEEEEC
Confidence 35677777742 166778665532 2222110 111111121 2 4566 777777653 4888998
Q ss_pred cCcc--eeeeeccCCCceEEEEEeCCCCceEEEeeCCC-----------------------CEEEEecCCCeeEEEeccc
Q 019117 116 SNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKDE-----------------------SVRLWNVQTGICILIFAGA 170 (346)
Q Consensus 116 ~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-----------------------~i~iwd~~~~~~~~~~~~~ 170 (346)
.+.+ .+..+.........+.. ++.+.+.|+.++ .+..||..+.+-...-..
T Consensus 375 ~~~~W~~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m- 450 (557)
T PHA02713 375 GDDKWKMLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF- 450 (557)
T ss_pred CCCeEEECCCCCcccccccEEEE---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC-
Confidence 7654 22222221112222222 567777777653 467788776543221110
Q ss_pred CCCCcceEEEEecCCCCcEEEEEecCC------eEEEEEccc-cceeeeeceeecCCCCCCCCccceeceEEEeecccce
Q 019117 171 GGHRNEVLSVDFHPSDIYRIASCGMDN------TVKIWSMKE-FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV 243 (346)
Q Consensus 171 ~~~~~~v~~~~~~~~~~~~l~s~~~d~------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 243 (346)
.....-.+++.. ++.+.+.|+.++ .+..||..+ .+- ..+..+.......
T Consensus 451 -~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W---------------------~~~~~m~~~r~~~ 506 (557)
T PHA02713 451 -WTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGW---------------------ELITTTESRLSAL 506 (557)
T ss_pred -CcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCe---------------------eEccccCcccccc
Confidence 011111123333 567777776542 356777765 221 1111222222223
Q ss_pred EEEEecCCEEEEEeecC--eEEEEcCCCCC
Q 019117 244 DCNRWLGDFILSKSVDN--EIVLWEPKMKE 271 (346)
Q Consensus 244 ~~~~~~~~~l~~~~~d~--~i~iwd~~~~~ 271 (346)
..+...+.+.++|+.++ .+..||+.+.+
T Consensus 507 ~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 507 HTILHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred eeEEECCEEEEEeeecceeehhhcCccccc
Confidence 33444578888998888 67777777664
No 371
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.069 Score=45.38 Aligned_cols=201 Identities=16% Similarity=0.078 Sum_probs=120.6
Q ss_pred EEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEe-e--CCCCEEEEecCCCeeEEEec
Q 019117 92 ACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSA-S--KDESVRLWNVQTGICILIFA 168 (346)
Q Consensus 92 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~--~d~~i~iwd~~~~~~~~~~~ 168 (346)
..++.+....+....++.|.+.|..+.+.......-. ....++++| ++..+..+ . .++++.+.|-.+.+.+....
T Consensus 80 ~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~ 157 (381)
T COG3391 80 AVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTATIP 157 (381)
T ss_pred eeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEEEe
Confidence 3447776466666667899999988777766655333 567899999 55444444 4 37899999999888888854
Q ss_pred ccCCCCcceEEEEecCCCCc-EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc-ceEEE
Q 019117 169 GAGGHRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN-YVDCN 246 (346)
Q Consensus 169 ~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~ 246 (346)
-......++++| ++. .+++-..++.|.+.|........ .. .......... ....+
T Consensus 158 ----vG~~P~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~-----------------~~~~~~~~~~P~~i~v 214 (381)
T COG3391 158 ----VGNTPTGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVVR-GS-----------------VGSLVGVGTGPAGIAV 214 (381)
T ss_pred ----cCCCcceEEECC-CCCeEEEEecCCCeEEEEeCCCcceec-cc-----------------cccccccCCCCceEEE
Confidence 222228999999 666 44455578899999976622100 00 0000111111 11222
Q ss_pred EecCCEEEEEeec---CeEEEEcCCCCCCCCCCcccccccc-ccCCCcCeeEEEEeecCCcceEEEE-cCCCcEEEEEcC
Q 019117 247 RWLGDFILSKSVD---NEIVLWEPKMKEQSPGEGTADILQK-YPVPECDIWFIKFSCDFHYNAAAIG-NREGKIFVWELQ 321 (346)
Q Consensus 247 ~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~~~l~~~-~~dg~i~iwd~~ 321 (346)
..++.++.+.... +.+...|..++.. ... ..........+.++|++. .+.+. +..+.+.+-|..
T Consensus 215 ~~~g~~~yV~~~~~~~~~v~~id~~~~~v---------~~~~~~~~~~~~~~v~~~p~g~--~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 215 DPDGNRVYVANDGSGSNNVLKIDTATGNV---------TATDLPVGSGAPRGVAVDPAGK--AAYVANSQGGTVSVIDGA 283 (381)
T ss_pred CCCCCEEEEEeccCCCceEEEEeCCCceE---------EEeccccccCCCCceeECCCCC--EEEEEecCCCeEEEEeCC
Confidence 2236644444332 5888888887652 111 111111345678999994 45444 445789999988
Q ss_pred CCCccee
Q 019117 322 SSPPVLI 328 (346)
Q Consensus 322 ~~~~~~~ 328 (346)
+......
T Consensus 284 ~~~v~~~ 290 (381)
T COG3391 284 TDRVVKT 290 (381)
T ss_pred CCceeee
Confidence 8765443
No 372
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.34 E-value=0.1 Score=46.43 Aligned_cols=152 Identities=15% Similarity=0.125 Sum_probs=84.8
Q ss_pred cEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee------cCCeEEEEEccCcceeee
Q 019117 50 NVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG------INGIIRVIDVSNEKLHKS 123 (346)
Q Consensus 50 ~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~ 123 (346)
.+++...++.+.-+|..+|+.+....... ......+.+.-.. .++ .++.+. .+|.|..+|.++|+.+..
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~-~~~~~~~tssP~v--~~g--~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGKVVWSKKNGD-YKAGYTITAAPLV--VKG--KVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred EEEEEcCCCEEEEEECCCCCEEeeccccc-ccccccccCCcEE--ECC--EEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 34443334448999988888876554210 0000111111111 134 344443 268999999999988765
Q ss_pred eccCCC-------------------------------ceE-EEEEeCCCCceEEEeeC-----CC-----------CEEE
Q 019117 124 FVGHGD-------------------------------SIN-EIRTQPLKPSLVVSASK-----DE-----------SVRL 155 (346)
Q Consensus 124 ~~~~~~-------------------------------~v~-~~~~~~~~~~~l~s~~~-----d~-----------~i~i 155 (346)
+..-.. .+. .+++.| ...+++.+.. ++ .|.-
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vA 275 (527)
T TIGR03075 197 RYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVA 275 (527)
T ss_pred ccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEE
Confidence 532110 111 235555 4445554431 12 5777
Q ss_pred EecCCCeeEEEecccCCCC-------cceEEEEecCCCC---cEEEEEecCCeEEEEEccccce
Q 019117 156 WNVQTGICILIFAGAGGHR-------NEVLSVDFHPSDI---YRIASCGMDNTVKIWSMKEFWT 209 (346)
Q Consensus 156 wd~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~ 209 (346)
.|+++|+....++... |. ....-+.+.. ++ ..++.+..+|.+.+.|-++++.
T Consensus 276 ld~~TG~~~W~~Q~~~-~D~wD~d~~~~p~l~d~~~-~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 276 RDPDTGKIKWHYQTTP-HDEWDYDGVNEMILFDLKK-DGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EccccCCEEEeeeCCC-CCCccccCCCCcEEEEecc-CCcEEEEEEEeCCCceEEEEECCCCce
Confidence 8999999988887421 21 1111222322 44 4788999999999999998765
No 373
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.25 E-value=0.074 Score=45.61 Aligned_cols=114 Identities=15% Similarity=0.104 Sum_probs=65.0
Q ss_pred eEEEEEEEcCCCCcEEEEee--cC-CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCE--EEEecCC
Q 019117 86 FYTVSWACNVDGIPFLVAGG--IN-GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESV--RLWNVQT 160 (346)
Q Consensus 86 v~~~~~~~~~~~~~~l~~~~--~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i--~iwd~~~ 160 (346)
+..-.|+ |+++.+....- .. ..+.++++++++....+. -.+.-..-+|+|++..++++...||.. .+.|+..
T Consensus 195 ~~~p~ws--~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~ 271 (425)
T COG0823 195 ILTPAWS--PDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG 271 (425)
T ss_pred eeccccC--cCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence 3334555 77773322222 22 358999999887554443 233345678999555556666777764 5557766
Q ss_pred CeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (346)
Q Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 206 (346)
++ +..+.. ..+.-..=.|+|++..++++.+..|.-.||-+..
T Consensus 272 ~~-~~~Lt~---~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~ 313 (425)
T COG0823 272 KN-LPRLTN---GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDL 313 (425)
T ss_pred Cc-ceeccc---CCccccCccCCCCCCEEEEEeCCCCCcceEEECC
Confidence 65 333442 2222235668995556666666677655554443
No 374
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.24 E-value=0.11 Score=44.61 Aligned_cols=32 Identities=13% Similarity=0.058 Sum_probs=27.1
Q ss_pred CcceEEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117 174 RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (346)
Q Consensus 174 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 206 (346)
.+++..+++|| ++++++.-..+|.+.+.+..-
T Consensus 216 ~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 216 DGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDF 247 (410)
T ss_pred CCCeEEEEECC-CCCEEEEEECCCCEEEEECcc
Confidence 46899999999 889999989999998876544
No 375
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.22 E-value=0.1 Score=43.96 Aligned_cols=257 Identities=11% Similarity=0.044 Sum_probs=103.5
Q ss_pred CccEEEEEcCC--cEEEEEeccCceeeeEeeeecC--CC--ccceEEEEEEEcCCCCcEEEEee------cCCeEEEEEc
Q 019117 48 YFNVFATVGGN--RVTVYQCLEGGVIAALQSYVDE--DK--EESFYTVSWACNVDGIPFLVAGG------INGIIRVIDV 115 (346)
Q Consensus 48 ~~~~la~~~~~--~v~i~~~~~~~~~~~~~~~~~~--~~--~~~v~~~~~~~~~~~~~~l~~~~------~dg~i~iwd~ 115 (346)
..++|+..+-. +|.|+|..+......+...... .. .+-..--...+-|+|. +++++- .-|-+.+.|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~-imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGR-IMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCcc-EEEEeccCCCCCCCCcEEEEcC
Confidence 45677776643 3999998854432222221111 01 1111112233348887 777752 2356888888
Q ss_pred cCcceeeeeccC---CCceEEEEEeCCCCceEEEee--------------------CCCCEEEEecCCCeeEEEecccCC
Q 019117 116 SNEKLHKSFVGH---GDSINEIRTQPLKPSLVVSAS--------------------KDESVRLWNVQTGICILIFAGAGG 172 (346)
Q Consensus 116 ~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~s~~--------------------~d~~i~iwd~~~~~~~~~~~~~~~ 172 (346)
++.+........ ...-.++-|.| ..+.++|.. ...++.+||+.+.+.++++....
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~- 242 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE- 242 (461)
T ss_dssp TT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T-
T ss_pred ccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC-
Confidence 777766655432 33456788888 777777754 23579999999999999997421
Q ss_pred CCcceEEEEec--CCCCcEEEEEecCCeEEEEEc-cccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec
Q 019117 173 HRNEVLSVDFH--PSDIYRIASCGMDNTVKIWSM-KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL 249 (346)
Q Consensus 173 ~~~~v~~~~~~--~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 249 (346)
....+..+.|. |....-++.+...++|..|-- ....-..++.+.....+.. .......+..+..-+.-|+.|..+
T Consensus 243 ~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~--~~~lp~ml~~~~~~P~LitDI~iS 320 (461)
T PF05694_consen 243 EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE--GWILPEMLKPFGAVPPLITDILIS 320 (461)
T ss_dssp TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE----SS---GGGGGG-EE------EEE-
T ss_pred CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC--cccccccccccccCCCceEeEEEc
Confidence 12345566665 322333444444555554433 3322222222111100000 000000001111124457777777
Q ss_pred --CCEEEEEee-cCeEEEEcCCCCCCCCCCcccc---ccc-----ccc--CCCcCeeEEEEeecCCcceEEEEc
Q 019117 250 --GDFILSKSV-DNEIVLWEPKMKEQSPGEGTAD---ILQ-----KYP--VPECDIWFIKFSCDFHYNAAAIGN 310 (346)
Q Consensus 250 --~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~---~~~-----~~~--~~~~~v~~~~~s~~~~~~~l~~~~ 310 (346)
.++|..+.. .|.|+.||+............. .+. ... .-.+...-+..|.||+ ++.+|.|
T Consensus 321 lDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGk-RlYvTnS 393 (461)
T PF05694_consen 321 LDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGK-RLYVTNS 393 (461)
T ss_dssp TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSS-EEEEE--
T ss_pred cCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCe-EEEEEee
Confidence 677777665 8999999998765321111000 000 000 0123456788999996 4445544
No 376
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.22 E-value=0.067 Score=41.96 Aligned_cols=201 Identities=14% Similarity=0.065 Sum_probs=105.3
Q ss_pred CccceEEEEEEEcCCCCcEEEEeecCC--eEEEEEccCcceeeeeccC-CCceEEEEEeCCCCceEEEeeCCCCEEEEec
Q 019117 82 KEESFYTVSWACNVDGIPFLVAGGING--IIRVIDVSNEKLHKSFVGH-GDSINEIRTQPLKPSLVVSASKDESVRLWNV 158 (346)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~ 158 (346)
|+.....-.+.+..+|. ++-+.+.-| .|+.+|+.+++......-. .-.-..++.. ++.+..-.-.++...+||.
T Consensus 41 Hd~~aFTQGL~~~~~g~-LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~ 117 (264)
T PF05096_consen 41 HDPTAFTQGLEFLDDGT-LYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDP 117 (264)
T ss_dssp --TT-EEEEEEEEETTE-EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEET
T ss_pred CCCcccCccEEecCCCE-EEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEcc
Confidence 44444444444446776 777777666 7999999999876554422 2233455555 3455555667899999999
Q ss_pred CCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee
Q 019117 159 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 238 (346)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (346)
.+.+.+..+. ..+.=..++. ++..|+.+.....+.++|..+++......+.....+ ...+..++.
T Consensus 118 ~tl~~~~~~~----y~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~p--------v~~LNELE~ 182 (264)
T PF05096_consen 118 NTLKKIGTFP----YPGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRP--------VSNLNELEY 182 (264)
T ss_dssp TTTEEEEEEE-----SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE-----------EEEEEE
T ss_pred ccceEEEEEe----cCCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEE--------CCCcEeEEE
Confidence 9999999987 4556667773 344455555567899999887554332222211110 112334444
Q ss_pred cccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccc------cCCCcCeeEEEEeecCCcceEEEEc
Q 019117 239 HSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY------PVPECDIWFIKFSCDFHYNAAAIGN 310 (346)
Q Consensus 239 ~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~s~~~~~~~l~~~~ 310 (346)
..+.|.+=.|..+ .|...|..+++.............. .....-...|++.|..+ ++++||=
T Consensus 183 i~G~IyANVW~td---------~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~-~l~vTGK 250 (264)
T PF05096_consen 183 INGKIYANVWQTD---------RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD-RLFVTGK 250 (264)
T ss_dssp ETTEEEEEETTSS---------EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT-EEEEEET
T ss_pred EcCEEEEEeCCCC---------eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC-EEEEEeC
Confidence 5555555555433 3444444444321100000011111 11135678999999886 5777763
No 377
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.21 E-value=0.086 Score=43.01 Aligned_cols=169 Identities=9% Similarity=-0.043 Sum_probs=93.5
Q ss_pred cEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec------C---CeEEEEEcc-Ccc
Q 019117 50 NVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI------N---GIIRVIDVS-NEK 119 (346)
Q Consensus 50 ~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~------d---g~i~iwd~~-~~~ 119 (346)
.+|+++ ..++.+++..++.....+............+...+. |+|. +-++... + ..=.+|-+. .+.
T Consensus 78 g~Lv~~-~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~--pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~ 153 (307)
T COG3386 78 GRLIAC-EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVD--PDGR-IWFGDMGYFDLGKSEERPTGSLYRVDPDGG 153 (307)
T ss_pred CeEEEE-ccccEEEeccCCceeEEeccccCCCCcCCCCceeEc--CCCC-EEEeCCCccccCccccCCcceEEEEcCCCC
Confidence 344444 566778887655553333322222222334445544 8887 4333322 0 111344444 466
Q ss_pred eeeeeccCCCceEEEEEeCCCCceEEE-eeCCCCEEEEecCC--C----eeEEEecccCCCCcceEEEEecCCCCcEEEE
Q 019117 120 LHKSFVGHGDSINEIRTQPLKPSLVVS-ASKDESVRLWNVQT--G----ICILIFAGAGGHRNEVLSVDFHPSDIYRIAS 192 (346)
Q Consensus 120 ~~~~~~~~~~~v~~~~~~~~~~~~l~s-~~~d~~i~iwd~~~--~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 192 (346)
.++.+..+-..-+.|+|+| +++.|+. =+..+.|.-|++.. + +...... ....+..-.++... ++.+.++
T Consensus 154 ~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~--~~~~G~PDG~~vDa-dG~lw~~ 229 (307)
T COG3386 154 VVRLLDDDLTIPNGLAFSP-DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDF--DEEPGLPDGMAVDA-DGNLWVA 229 (307)
T ss_pred EEEeecCcEEecCceEECC-CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEc--cCCCCCCCceEEeC-CCCEEEe
Confidence 6666666666678999999 6655554 45557888887752 1 1111111 12446666777876 7776655
Q ss_pred EecCC-eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecC
Q 019117 193 CGMDN-TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG 250 (346)
Q Consensus 193 ~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 250 (346)
+..+| .|.+|+... ..+..+......+++++|-|
T Consensus 230 a~~~g~~v~~~~pdG------------------------~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 230 AVWGGGRVVRFNPDG------------------------KLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred cccCCceEEEECCCC------------------------cEEEEEECCCCCCccceEeC
Confidence 55544 899998874 23344444446677888863
No 378
>PHA03098 kelch-like protein; Provisional
Probab=97.21 E-value=0.052 Score=48.61 Aligned_cols=104 Identities=13% Similarity=0.092 Sum_probs=52.0
Q ss_pred CCCCcEEEEeecCC------eEEEEEccCcceee--eeccCCCceEEEEEeCCCCceEEEeeCC-----CCEEEEecCCC
Q 019117 95 VDGIPFLVAGGING------IIRVIDVSNEKLHK--SFVGHGDSINEIRTQPLKPSLVVSASKD-----ESVRLWNVQTG 161 (346)
Q Consensus 95 ~~~~~~l~~~~~dg------~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~ 161 (346)
.++. +++.|+.++ .+..||..+.+-.. .+.........+.+ ++.+++.||.+ ..+..||..+.
T Consensus 293 ~~~~-lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 293 LNNV-IYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred ECCE-EEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCC
Confidence 3455 667776542 56778877655322 11111112222222 56777788765 34777887765
Q ss_pred eeEEEecccCCCCcceEEEEecCCCCcEEEEEecC------CeEEEEEccc
Q 019117 162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD------NTVKIWSMKE 206 (346)
Q Consensus 162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~ 206 (346)
+-.. .... .+...-.+++.. ++.+++.||.+ ..+..||+.+
T Consensus 369 ~W~~-~~~l-p~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 369 KWRE-EPPL-IFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred ceee-CCCc-CcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCC
Confidence 4322 1110 011111122322 56777777632 3577888776
No 379
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.16 E-value=0.0024 Score=47.98 Aligned_cols=103 Identities=16% Similarity=0.157 Sum_probs=67.6
Q ss_pred EEEEeecCCeEEEEEccCcc-eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC-cce
Q 019117 100 FLVAGGINGIIRVIDVSNEK-LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR-NEV 177 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~v 177 (346)
-++.|+.+|.|.+|.+.-.- ....+..-...|.++.-.-.++.+..++..||.|+.|++.-.+.+.... .|. .++
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g---~h~~~~~ 148 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG---QHNFESG 148 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeec---cccCCCc
Confidence 68999999999999986322 1112222223333333332245589999999999999998777776665 465 455
Q ss_pred EEEEecCCCCcEEEEE--ecCCeEEEEEccc
Q 019117 178 LSVDFHPSDIYRIASC--GMDNTVKIWSMKE 206 (346)
Q Consensus 178 ~~~~~~~~~~~~l~s~--~~d~~i~iwd~~~ 206 (346)
..+.... .+..+..+ +.|..++.|++..
T Consensus 149 e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 149 EELIVVG-SDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeEEec-CCceEEeeccccchhhhhcchhh
Confidence 5555553 55666666 6777778887776
No 380
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.018 Score=48.92 Aligned_cols=142 Identities=11% Similarity=0.130 Sum_probs=91.2
Q ss_pred eEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCC------CcEEEEEecCCeEEEEEccccceeeeecee
Q 019117 143 LVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD------IYRIASCGMDNTVKIWSMKEFWTYVEKSFT 216 (346)
Q Consensus 143 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 216 (346)
+|.++.....++-.|++.|+.+.+++ ....|+-+.+.|+. ...-+.|-.+..|.-||+|-....
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk----~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~------ 417 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWK----FEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN------ 417 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEee----ccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcc------
Confidence 44556666778889999999999998 33337777777621 122345667889999999862210
Q ss_pred ecCCCCCCCCccceeceEEEeecc----cceEEEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcC
Q 019117 217 WTDLPSKFPTKYVQFPVFIASVHS----NYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD 291 (346)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (346)
.+.....|. ....|.+-. ..++++|+.+|.||+||- .+.. .-..+++-..+
T Consensus 418 ---------------kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~--------AKTAlPgLG~~ 473 (644)
T KOG2395|consen 418 ---------------KLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRR--------AKTALPGLGDA 473 (644)
T ss_pred ---------------eeeeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhh--------hhhcccccCCc
Confidence 111111111 122333333 679999999999999997 3331 34456666789
Q ss_pred eeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117 292 IWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (346)
Q Consensus 292 v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~ 321 (346)
|..+..+.|| .++++.+ +..+.+.++.
T Consensus 474 I~hVdvtadG--Kwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 474 IKHVDVTADG--KWILATC-KTYLLLIDTL 500 (644)
T ss_pred eeeEEeeccC--cEEEEec-ccEEEEEEEe
Confidence 9999999999 5555544 3456666653
No 381
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.04 E-value=0.0025 Score=35.17 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=30.3
Q ss_pred CCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeE
Q 019117 128 GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI 164 (346)
Q Consensus 128 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 164 (346)
...|..++|+| ..+++|.++.+|.|.++.+ +++.+
T Consensus 11 ~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcCc
Confidence 45699999999 8999999999999999998 45543
No 382
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.99 E-value=0.16 Score=42.22 Aligned_cols=218 Identities=11% Similarity=0.085 Sum_probs=96.8
Q ss_pred EcCCCCcEEEEeecCC--eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEeccc
Q 019117 93 CNVDGIPFLVAGGING--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA 170 (346)
Q Consensus 93 ~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 170 (346)
+.++|+.+|..+..+| .+.+.|+.+++..+.-.+.........++| +.+.++-......|.-.|+++.+....+.
T Consensus 43 ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~-~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~-- 119 (386)
T PF14583_consen 43 FTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSP-DDRALYYVKNGRSLRRVDLDTLEERVVYE-- 119 (386)
T ss_dssp B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-T-TSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred cCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEec-CCCeEEEEECCCeEEEEECCcCcEEEEEE--
Confidence 3488975666666555 577778888887765554323333556677 55666545455688889999887665555
Q ss_pred CCCCcceEEEEecC-CCCcEEEEEecCC----------------------eEEEEEccccceeeeeceeecCCCCCCCCc
Q 019117 171 GGHRNEVLSVDFHP-SDIYRIASCGMDN----------------------TVKIWSMKEFWTYVEKSFTWTDLPSKFPTK 227 (346)
Q Consensus 171 ~~~~~~v~~~~~~~-~~~~~l~s~~~d~----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 227 (346)
.....+-...|.. .++.+++-.-... .|..-|+.+
T Consensus 120 -~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t--------------------- 177 (386)
T PF14583_consen 120 -VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT--------------------- 177 (386)
T ss_dssp ---TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT---------------------
T ss_pred -CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC---------------------
Confidence 3455554455532 2444433221100 011111111
Q ss_pred cceeceEEEeecccceEEEEec---CCEEEEEee---cCe-EEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeec
Q 019117 228 YVQFPVFIASVHSNYVDCNRWL---GDFILSKSV---DNE-IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD 300 (346)
Q Consensus 228 ~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~---d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 300 (346)
.....+-.....+.-+.|+ +..|+-|-+ +.. -|||-+++.... ..++..-. ....+..=-|.||
T Consensus 178 ---G~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~-----~~~v~~~~-~~e~~gHEfw~~D 248 (386)
T PF14583_consen 178 ---GERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN-----VKKVHRRM-EGESVGHEFWVPD 248 (386)
T ss_dssp -----EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS--------EESS----TTEEEEEEEE-TT
T ss_pred ---CceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc-----ceeeecCC-CCcccccccccCC
Confidence 1122333345556667776 445555433 321 356655543210 01111111 1223344468999
Q ss_pred CCcceEEE----EcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117 301 FHYNAAAI----GNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 301 ~~~~~l~~----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~ 346 (346)
|. .+... ++.+..|.-+|+.+++.......+ ...++.-|+||++
T Consensus 249 G~-~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p-~~~H~~ss~Dg~L 296 (386)
T PF14583_consen 249 GS-TIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP-WCSHFMSSPDGKL 296 (386)
T ss_dssp SS--EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSE
T ss_pred CC-EEEEEeecCCCCceEEEeeCCCCCCceEEEeCC-ceeeeEEcCCCCE
Confidence 85 22222 223556777888888755444433 3456777888864
No 383
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.96 E-value=0.13 Score=40.69 Aligned_cols=167 Identities=10% Similarity=0.076 Sum_probs=103.4
Q ss_pred cccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (346)
Q Consensus 29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 108 (346)
+.|-...|.++.|+|. +..+|++.....-.|+=..+|+.+..+.-.. -.....+.+. .+|. +.++--.++
T Consensus 81 i~g~~~nvS~LTynp~---~rtLFav~n~p~~iVElt~~GdlirtiPL~g----~~DpE~Ieyi--g~n~-fvi~dER~~ 150 (316)
T COG3204 81 ILGETANVSSLTYNPD---TRTLFAVTNKPAAIVELTKEGDLIRTIPLTG----FSDPETIEYI--GGNQ-FVIVDERDR 150 (316)
T ss_pred cccccccccceeeCCC---cceEEEecCCCceEEEEecCCceEEEecccc----cCChhHeEEe--cCCE-EEEEehhcc
Confidence 3455566999999992 3456666655555555556777777665321 1112224554 5565 777767788
Q ss_pred eEEEEEccCcceee----------eeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCC-----
Q 019117 109 IIRVIDVSNEKLHK----------SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGH----- 173 (346)
Q Consensus 109 ~i~iwd~~~~~~~~----------~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----- 173 (346)
.+.++.++....+. .....+.....++|.| ....|..+-+-.-+.|+.+..............+
T Consensus 151 ~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~ 229 (316)
T COG3204 151 ALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRD 229 (316)
T ss_pred eEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCcccccc
Confidence 88888776543211 1111256778999999 6677777777777888877633211111100011
Q ss_pred --CcceEEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117 174 --RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (346)
Q Consensus 174 --~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 206 (346)
-..|.++.|++..+.+++-+.+++.+.-.|...
T Consensus 230 ~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 230 LFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred eEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 235678889986778888888888888777765
No 384
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.92 E-value=0.098 Score=46.91 Aligned_cols=189 Identities=13% Similarity=0.131 Sum_probs=102.8
Q ss_pred EEEEeecC------CeEEEEEccCcce--eeeeccCCCceEEEEEeCCCCceEEEeeCC------CCEEEEecCCCeeEE
Q 019117 100 FLVAGGIN------GIIRVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSASKD------ESVRLWNVQTGICIL 165 (346)
Q Consensus 100 ~l~~~~~d------g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~ 165 (346)
+++.|+.+ ..+..||..+++- ...+. ....-.+++.. ++.+.++|+.| .++..||.+..+-..
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 67777766 3688888877642 22233 22334455555 46888899988 357788887766332
Q ss_pred EecccCCCCcceEEEEecCCCCcEEEEEecCC-----eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc
Q 019117 166 IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-----TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240 (346)
Q Consensus 166 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (346)
+..-...... .+++.. ++.+.+.||.|| +|..||..+.+-. .+..+....
T Consensus 364 -~a~M~~~R~~-~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~---------------------~va~m~~~r 418 (571)
T KOG4441|consen 364 -VAPMNTKRSD-FGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWT---------------------PVAPMLTRR 418 (571)
T ss_pred -cCCccCcccc-ceeEEE--CCEEEEEeccccccccccEEEecCCCCccc---------------------ccCCCCcce
Confidence 2210011111 223333 788899999986 4666777662211 111111111
Q ss_pred cceEEEEecCCEEEEEeecC------eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCC-
Q 019117 241 NYVDCNRWLGDFILSKSVDN------EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG- 313 (346)
Q Consensus 241 ~~i~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg- 313 (346)
...-...+.|.+.++||.++ ++..||..+++- ..+..+........ + -.-++ .+.+.|+.|+
T Consensus 419 ~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W-------~~~~~M~~~R~~~g-~-a~~~~--~iYvvGG~~~~ 487 (571)
T KOG4441|consen 419 SGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW-------TLIAPMNTRRSGFG-V-AVLNG--KIYVVGGFDGT 487 (571)
T ss_pred eeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce-------eecCCcccccccce-E-EEECC--EEEEECCccCC
Confidence 22223344477788887553 577888887642 12222222221111 2 22334 5778888776
Q ss_pred ----cEEEEEcCCCCcce
Q 019117 314 ----KIFVWELQSSPPVL 327 (346)
Q Consensus 314 ----~i~iwd~~~~~~~~ 327 (346)
+|..||..+.+...
T Consensus 488 ~~~~~VE~ydp~~~~W~~ 505 (571)
T KOG4441|consen 488 SALSSVERYDPETNQWTM 505 (571)
T ss_pred CccceEEEEcCCCCceeE
Confidence 37888888876433
No 385
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.88 E-value=0.0037 Score=34.53 Aligned_cols=32 Identities=16% Similarity=0.432 Sum_probs=28.5
Q ss_pred cCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 290 CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 290 ~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
..|..++|+|.. .++|.++.+|.|.++.+ +++
T Consensus 12 ~~v~~~~w~P~m--dLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 12 SRVSCMSWCPTM--DLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CcEEEEEECCCC--CEEEEEECCCeEEEEEC-CCc
Confidence 468999999999 79999999999999999 443
No 386
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.80 E-value=0.3 Score=43.96 Aligned_cols=150 Identities=14% Similarity=0.134 Sum_probs=78.8
Q ss_pred CceEEEEEEeecCCCccEEEEEc------CCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec
Q 019117 34 RPLYAVVFNFIDSRYFNVFATVG------GNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI 106 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~~------~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 106 (346)
..+...+++| +|+.+|... .+. -.||-...+.....+. .......-.|+ |+|+ .|++...
T Consensus 350 ~~vsspaiSp----dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt------~g~~~t~PsWs--pDG~-~lw~v~d 416 (591)
T PRK13616 350 GNITSAALSR----SGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL------EGHSLTRPSWS--LDAD-AVWVVVD 416 (591)
T ss_pred cCcccceECC----CCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee------cCCCCCCceEC--CCCC-ceEEEec
Confidence 3567888888 677666654 232 3344332233223221 11123334454 8877 6666542
Q ss_pred C------------CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEE---EecCCCe-eEE---Ee
Q 019117 107 N------------GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL---WNVQTGI-CIL---IF 167 (346)
Q Consensus 107 d------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i---wd~~~~~-~~~---~~ 167 (346)
. +.+.+.+++.++... ...+.|..+.|+| ++..++... ++.|.+ -....|. .+. .+
T Consensus 417 g~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l 491 (591)
T PRK13616 417 GNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREV 491 (591)
T ss_pred CcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEe
Confidence 2 233333444443322 2356799999999 777766655 477777 4434443 110 11
Q ss_pred cccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEcc
Q 019117 168 AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 205 (346)
Q Consensus 168 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 205 (346)
. ......+..+.|.+ ++.++ .+..++.-.+|.+.
T Consensus 492 ~--~~l~~~~~~l~W~~-~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 492 G--PGLGDTAVSLDWRT-GDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred e--cccCCccccceEec-CCEEE-EEecCCCCceEEEe
Confidence 1 02334468899997 66644 55555545555543
No 387
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.78 E-value=0.22 Score=40.63 Aligned_cols=219 Identities=11% Similarity=0.051 Sum_probs=114.7
Q ss_pred cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeecc--
Q 019117 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG-- 126 (346)
Q Consensus 50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-- 126 (346)
.++.+--.++ |.-|+..++.. ..+. ....+.+... .+..+ .|+++. . -+.+++.+++..+..+..
T Consensus 38 ~L~w~DI~~~~i~r~~~~~g~~-~~~~------~p~~~~~~~~-~d~~g--~Lv~~~-~-g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 38 ALLWVDILGGRIHRLDPETGKK-RVFP------SPGGFSSGAL-IDAGG--RLIACE-H-GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred EEEEEeCCCCeEEEecCCcCce-EEEE------CCCCccccee-ecCCC--eEEEEc-c-ccEEEeccCCceeEEecccc
Confidence 3444444444 77787665533 2222 2222333332 22333 455553 2 366677665555322211
Q ss_pred ---CCCceEEEEEeCCCCceEEEeeC------C---CCEEEEecC-CCeeEEEecccCCCCcceEEEEecCCCCcEEEEE
Q 019117 127 ---HGDSINEIRTQPLKPSLVVSASK------D---ESVRLWNVQ-TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC 193 (346)
Q Consensus 127 ---~~~~v~~~~~~~~~~~~l~s~~~------d---~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 193 (346)
.....+.+...| ++.+.++... + ..=.+|.+. .+..++.+. .+-..-+.|+|+| +++.++.+
T Consensus 106 ~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~---~~~~~~NGla~Sp-Dg~tly~a 180 (307)
T COG3386 106 DGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLD---DDLTIPNGLAFSP-DGKTLYVA 180 (307)
T ss_pred CCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeec---CcEEecCceEECC-CCCEEEEE
Confidence 124567888888 5555554332 0 111344444 456666555 4566778999999 66555544
Q ss_pred -ecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecC-eEEEEcCCC
Q 019117 194 -GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN-EIVLWEPKM 269 (346)
Q Consensus 194 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~-~i~iwd~~~ 269 (346)
+..+.|..|++........ .................++.+ |.+-+++..+| .|.+|+.+
T Consensus 181 DT~~~~i~r~~~d~~~g~~~----------------~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd- 243 (307)
T COG3386 181 DTPANRIHRYDLDPATGPIG----------------GRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD- 243 (307)
T ss_pred eCCCCeEEEEecCcccCccC----------------CcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-
Confidence 5557888888863100000 001112222233444455555 55554554444 89999998
Q ss_pred CCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcC
Q 019117 270 KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR 311 (346)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~ 311 (346)
++ ++..+..+...+++++|--.....+++++..
T Consensus 244 G~---------l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 244 GK---------LLGEIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred Cc---------EEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence 55 5667777767788888875322134444443
No 388
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.0082 Score=55.22 Aligned_cols=100 Identities=16% Similarity=0.186 Sum_probs=70.0
Q ss_pred CCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecC
Q 019117 140 KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD 219 (346)
Q Consensus 140 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 219 (346)
....++.|+..|.+...|+... +..+.....-.++|++++|+. ++..++.|-.+|.|.+||+..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~------------- 161 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHR------------- 161 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccC-------------
Confidence 3457888888999999988643 221221113568999999996 999999999999999999988
Q ss_pred CCCCCCCccceeceEEEeecccceEEEEec-----CCEEEEEeecCeEEEEcC
Q 019117 220 LPSKFPTKYVQFPVFIASVHSNYVDCNRWL-----GDFILSKSVDNEIVLWEP 267 (346)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~l~~~~~d~~i~iwd~ 267 (346)
......+..|..+.+.+-+. +..++++...|. +|.+
T Consensus 162 ----------~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 162 ----------AKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ----------CcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 34555666666665555443 345777766664 5543
No 389
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.77 E-value=0.27 Score=41.50 Aligned_cols=198 Identities=14% Similarity=0.101 Sum_probs=86.2
Q ss_pred EEEEee-cCCeEEEEEccC----cceeeeecc---CC----CceEEEEEeCCCCceEEEee--C----CCCEEEEecCCC
Q 019117 100 FLVAGG-INGIIRVIDVSN----EKLHKSFVG---HG----DSINEIRTQPLKPSLVVSAS--K----DESVRLWNVQTG 161 (346)
Q Consensus 100 ~l~~~~-~dg~i~iwd~~~----~~~~~~~~~---~~----~~v~~~~~~~~~~~~l~s~~--~----d~~i~iwd~~~~ 161 (346)
+|+..+ .++.|.|.|+.+ .+..+.+.. +. .....+..-| ++..++|+- . -|-+.+.|-++.
T Consensus 89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~tf 167 (461)
T PF05694_consen 89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGETF 167 (461)
T ss_dssp EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcCccc
Confidence 555555 788999999874 344444432 11 2233455556 677777742 2 245788888877
Q ss_pred eeEEEecccCCCCcceEEEEecCCCCcEEEEEec--------------------CCeEEEEEccccceeeeeceeecCCC
Q 019117 162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM--------------------DNTVKIWSMKEFWTYVEKSFTWTDLP 221 (346)
Q Consensus 162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--------------------d~~i~iwd~~~~~~~~~~~~~~~~~~ 221 (346)
+.........+....-+.+.|.| ..+.++|... ..++.+||+...+
T Consensus 168 ~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~------------- 233 (461)
T PF05694_consen 168 EVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK------------- 233 (461)
T ss_dssp -EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE-------------
T ss_pred cccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc-------------
Confidence 77777764333344567788888 8888887643 2589999999833
Q ss_pred CCCCCccceeceEEEeeccc--ceEEEEec----CC-EEEEEeecCeEEEEcC-CCCCCCCC------------Cccccc
Q 019117 222 SKFPTKYVQFPVFIASVHSN--YVDCNRWL----GD-FILSKSVDNEIVLWEP-KMKEQSPG------------EGTADI 281 (346)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~--~i~~~~~~----~~-~l~~~~~d~~i~iwd~-~~~~~~~~------------~~~~~~ 281 (346)
.++++..-.. ....+.|. .. -++.+....+|-.|-- ..++-... ......
T Consensus 234 ----------~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~m 303 (461)
T PF05694_consen 234 ----------LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEM 303 (461)
T ss_dssp ----------EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GG
T ss_pred ----------EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccccc
Confidence 3333332222 13344443 11 2333333344444433 22210000 000112
Q ss_pred cccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117 282 LQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (346)
Q Consensus 282 ~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (346)
++.+..-..-|+.|.+|.|.+ -+.+++=.+|.|+.||+.+-
T Consensus 304 l~~~~~~P~LitDI~iSlDDr-fLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 304 LKPFGAVPPLITDILISLDDR-FLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp GGGG-EE------EEE-TTS--EEEEEETTTTEEEEEE-SST
T ss_pred ccccccCCCceEeEEEccCCC-EEEEEcccCCcEEEEecCCC
Confidence 222222234688999999994 23455557999999999884
No 390
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.61 E-value=0.21 Score=38.14 Aligned_cols=96 Identities=11% Similarity=0.061 Sum_probs=55.3
Q ss_pred EEEEec---CCEEEEEeecCeEEEEc--CCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117 244 DCNRWL---GDFILSKSVDNEIVLWE--PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (346)
Q Consensus 244 ~~~~~~---~~~l~~~~~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw 318 (346)
..++|+ ..+..+-+.+-+|.-|| ..++..........+....+......-.++..-+| .+.+++-..++|...
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG--~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEG--NLYVATFNGGTVQKV 238 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCC--cEEEEEecCcEEEEE
Confidence 356666 23555566677787777 44544221111111111100011112234444445 677777788999999
Q ss_pred EcCCCCcceeeeeeee-EEEEEec
Q 019117 319 ELQSSPPVLIARLICF-SLHVKYN 341 (346)
Q Consensus 319 d~~~~~~~~~~~~~~~-~~~~~~s 341 (346)
|..+|+.++.++++.. +++++|-
T Consensus 239 dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 239 DPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred CCCCCcEEEEEEcCCCceEEEEec
Confidence 9999999888887754 7777774
No 391
>PHA02790 Kelch-like protein; Provisional
Probab=96.59 E-value=0.47 Score=41.87 Aligned_cols=100 Identities=11% Similarity=0.025 Sum_probs=50.8
Q ss_pred EEEEeecCC-----eEEEEEccCccee--eeeccCCCceEEEEEeCCCCceEEEeeCC--CCEEEEecCCCeeEEEeccc
Q 019117 100 FLVAGGING-----IIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKD--ESVRLWNVQTGICILIFAGA 170 (346)
Q Consensus 100 ~l~~~~~dg-----~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~ 170 (346)
++++|+.++ .+..||..+.+-. ..+.........+. - ++.+.+.|+.+ ..+..||..+++-. .+...
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~-~~~iYviGG~~~~~sve~ydp~~n~W~-~~~~l 349 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--A-NNKLYVVGGLPNPTSVERWFHGDAAWV-NMPSL 349 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--E-CCEEEEECCcCCCCceEEEECCCCeEE-ECCCC
Confidence 667776543 5667887765422 22221111222222 2 56777788754 35778887655332 22211
Q ss_pred CCCCcceEEEEecCCCCcEEEEEecCC---eEEEEEccc
Q 019117 171 GGHRNEVLSVDFHPSDIYRIASCGMDN---TVKIWSMKE 206 (346)
Q Consensus 171 ~~~~~~v~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~ 206 (346)
...... .+++.. ++.+.+.||.++ .+..||.++
T Consensus 350 ~~~r~~-~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~ 385 (480)
T PHA02790 350 LKPRCN-PAVASI--NNVIYVIGGHSETDTTTEYLLPNH 385 (480)
T ss_pred CCCCcc-cEEEEE--CCEEEEecCcCCCCccEEEEeCCC
Confidence 011111 123332 677778877654 466777765
No 392
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.55 E-value=0.33 Score=39.69 Aligned_cols=247 Identities=10% Similarity=0.031 Sum_probs=127.0
Q ss_pred cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee----------cCCeEEEEEccCcceeeeeccCC
Q 019117 59 RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG----------INGIIRVIDVSNEKLHKSFVGHG 128 (346)
Q Consensus 59 ~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~ 128 (346)
++.++|..+++.+..+..-. ...+. .+|+++ .++++. ..-.|.+||..+-.....+.-..
T Consensus 18 rv~viD~d~~k~lGmi~~g~-------~~~~~--~spdgk-~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~ 87 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMIDTGF-------LGNVA--LSPDGK-TIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPP 87 (342)
T ss_dssp EEEEEETTTTEEEEEEEEES-------SEEEE--E-TTSS-EEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETT
T ss_pred eEEEEECCCCcEEEEeeccc-------CCcee--ECCCCC-EEEEEEEEEeccccccceeEEEEEecCcCcccceEecCC
Confidence 58999988877766665321 11133 448998 666542 34579999999987776553222
Q ss_pred C-------ceEEEEEeCCCCceEEEe--eCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeE
Q 019117 129 D-------SINEIRTQPLKPSLVVSA--SKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTV 199 (346)
Q Consensus 129 ~-------~v~~~~~~~~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 199 (346)
. ....++++. ++++++.. +--..|.|-|+..++.+.++.. .+ |.-..|....-+.+-+.||.+
T Consensus 88 k~R~~~~~~~~~~~ls~-dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~----PG---C~~iyP~~~~~F~~lC~DGsl 159 (342)
T PF06433_consen 88 KPRAQVVPYKNMFALSA-DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT----PG---CWLIYPSGNRGFSMLCGDGSL 159 (342)
T ss_dssp S-B--BS--GGGEEE-T-TSSEEEEEEESSSEEEEEEETTTTEEEEEEEG----TS---EEEEEEEETTEEEEEETTSCE
T ss_pred cchheecccccceEEcc-CCcEEEEEccCCCCeEEEEECCCCceeeeecC----CC---EEEEEecCCCceEEEecCCce
Confidence 1 223455666 55555543 2335677888888888877762 22 222223234557788889999
Q ss_pred EEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE-EEEec--CCEEEEEeecCeEEEEcCCCCCCCCCC
Q 019117 200 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD-CNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE 276 (346)
Q Consensus 200 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~ 276 (346)
.-..+....+...+... .+....+++. .-.+. +..++-.+.+|.|+--|+.........
T Consensus 160 ~~v~Ld~~Gk~~~~~t~------------------~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~ 221 (342)
T PF06433_consen 160 LTVTLDADGKEAQKSTK------------------VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGK 221 (342)
T ss_dssp EEEEETSTSSEEEEEEE------------------ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEE
T ss_pred EEEEECCCCCEeEeecc------------------ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccC
Confidence 99988852221111100 0000001010 00111 334444555666665555543311000
Q ss_pred cccccc----ccccCCCcCeeEEEEeecCCcceEEEEc---C-----CC--cEEEEEcCCCCcceeeeeeeeEEEEEecC
Q 019117 277 GTADIL----QKYPVPECDIWFIKFSCDFHYNAAAIGN---R-----EG--KIFVWELQSSPPVLIARLICFSLHVKYNP 342 (346)
Q Consensus 277 ~~~~~~----~~~~~~~~~v~~~~~s~~~~~~~l~~~~---~-----dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~sp 342 (346)
....+ ..-....+...-+++++... .|.+-- . |+ .|.++|+.+++.+....++..+.++..+-
T Consensus 222 -~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~--rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsq 298 (342)
T PF06433_consen 222 -PWSLLTDAEKADGWRPGGWQLIAYHAASG--RLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQ 298 (342)
T ss_dssp -EEESS-HHHHHTTEEE-SSS-EEEETTTT--EEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEES
T ss_pred -cccccCccccccCcCCcceeeeeeccccC--eEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEcc
Confidence 00000 00011123344567776553 222221 1 22 47777899988888888887777887776
Q ss_pred CC
Q 019117 343 QS 344 (346)
Q Consensus 343 dg 344 (346)
|.
T Consensus 299 d~ 300 (342)
T PF06433_consen 299 DD 300 (342)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 393
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.34 E-value=0.018 Score=30.75 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=27.1
Q ss_pred cceEEEEecCCCC--cEEEEEecCCeEEEEEccc
Q 019117 175 NEVLSVDFHPSDI--YRIASCGMDNTVKIWSMKE 206 (346)
Q Consensus 175 ~~v~~~~~~~~~~--~~l~s~~~d~~i~iwd~~~ 206 (346)
+.|+++.|+|..+ .+|+.+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998555 6888888889999999995
No 394
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.33 E-value=0.92 Score=42.28 Aligned_cols=177 Identities=17% Similarity=0.193 Sum_probs=111.9
Q ss_pred EeccCceeeeEeeeecCCCccceEEEEEEEcCC-CCcEEEEee----------cCCeEEEEEccCcceeeeeccC--CCc
Q 019117 64 QCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFLVAGG----------INGIIRVIDVSNEKLHKSFVGH--GDS 130 (346)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~--~~~ 130 (346)
+..+.+....+..+.....+.....++..+..| +. ++++|. ..|.|.++.+...+.++.+..+ .+.
T Consensus 753 ~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t-~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga 831 (1096)
T KOG1897|consen 753 RVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNT-YYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA 831 (1096)
T ss_pred EEecCCceeEEeeccccccceeeeeeeeeecCCCce-EEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence 333344444444443332233333333445455 44 788774 3588999988774444443322 455
Q ss_pred eEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEcccccee
Q 019117 131 INEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTY 210 (346)
Q Consensus 131 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 210 (346)
+.++..- ++.++|.- ...|++|++.+.+.++.-. .+..++..+...- .++.++.|..-+.+.+...+..+.
T Consensus 832 v~aL~~f--ngkllA~I--n~~vrLye~t~~~eLr~e~---~~~~~~~aL~l~v-~gdeI~VgDlm~Sitll~y~~~eg- 902 (1096)
T KOG1897|consen 832 VYALVEF--NGKLLAGI--NQSVRLYEWTTERELRIEC---NISNPIIALDLQV-KGDEIAVGDLMRSITLLQYKGDEG- 902 (1096)
T ss_pred eeehhhh--CCeEEEec--CcEEEEEEccccceehhhh---cccCCeEEEEEEe-cCcEEEEeeccceEEEEEEeccCC-
Confidence 6665544 45555543 4689999998886655544 5788888888886 888999999888888766665221
Q ss_pred eeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEcCCC
Q 019117 211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKM 269 (346)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~ 269 (346)
......-..++.+++++.+- ++.++.+..+|.+.+...++
T Consensus 903 -------------------~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 903 -------------------NFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred -------------------ceEEeehhhCccceeeEEEecCceEEeecccccEEEEEecC
Confidence 12233445678888888876 77777777788888876654
No 395
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.32 E-value=0.46 Score=43.13 Aligned_cols=154 Identities=12% Similarity=0.077 Sum_probs=92.8
Q ss_pred ccEEEEEcCCcEEEEEeccCceeee----Eeeee-------------cCCCccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 019117 49 FNVFATVGGNRVTVYQCLEGGVIAA----LQSYV-------------DEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (346)
Q Consensus 49 ~~~la~~~~~~v~i~~~~~~~~~~~----~~~~~-------------~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 111 (346)
..++..+..+.|.||+...-..... +.-.. .......|..+.... -.+...|+.+..||.|.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~-lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGD-LGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecc-cCCeeEEEEEecCCeEE
Confidence 4677788888899999764333111 00000 000123344443332 23444899999999999
Q ss_pred EEEccC-------c----c---------eeeeeccCCCceEEEEEe--CCCCceEEEeeCCCCEEEEecCCCeeEEEecc
Q 019117 112 VIDVSN-------E----K---------LHKSFVGHGDSINEIRTQ--PLKPSLVVSASKDESVRLWNVQTGICILIFAG 169 (346)
Q Consensus 112 iwd~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 169 (346)
+|.+++ . + +...+. ....+++++++ . ..++||+++....|.||-............
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~ 205 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRLIAVSSNSQEVTVFAFALVDERFYHVP 205 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceEEEEecCCceEEEEEEecccccccccc
Confidence 997632 0 0 111111 34578999998 6 778899999889898886654211111110
Q ss_pred cCCCCcceEEEEecCCC----C-cEEEEEecCCeEEEEEcc
Q 019117 170 AGGHRNEVLSVDFHPSD----I-YRIASCGMDNTVKIWSMK 205 (346)
Q Consensus 170 ~~~~~~~v~~~~~~~~~----~-~~l~s~~~d~~i~iwd~~ 205 (346)
...+...|-+|+|-+++ | ..+++++-.|.+.+|++.
T Consensus 206 s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 206 SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 11256678899998632 2 278888999999998883
No 396
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.32 E-value=0.0011 Score=59.35 Aligned_cols=215 Identities=17% Similarity=0.216 Sum_probs=118.4
Q ss_pred cccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEec--cCceeeeEeeeecCCCccceEEEEEEE-cCCCCcEEEEee
Q 019117 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCL--EGGVIAALQSYVDEDKEESFYTVSWAC-NVDGIPFLVAGG 105 (346)
Q Consensus 29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~l~~~~ 105 (346)
++|..+.|-.+.|-..+...+..+ -+...||++. .|+....+..+....-+..+.-+.|+. -++.. ++..+-
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~~~----vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~-~ic~~~ 202 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGRRL----VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKV-YICYGL 202 (1283)
T ss_pred HhcCCCCcccccccccCChHHHHH----hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccc-eeeecc
Confidence 477788888888876443222211 1237788765 455444444333222334445566652 23344 888888
Q ss_pred cCCeEEEEEccCcceeeeeccCCCceEEEEE-----------eCCCCceEEEeeCCCCEEEEecC-----CCeeEEEecc
Q 019117 106 INGIIRVIDVSNEKLHKSFVGHGDSINEIRT-----------QPLKPSLVVSASKDESVRLWNVQ-----TGICILIFAG 169 (346)
Q Consensus 106 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-----------~~~~~~~l~s~~~d~~i~iwd~~-----~~~~~~~~~~ 169 (346)
.++.+++..+++... ..+.+|...+..++| +| ++..|+.+..||.++.|.+. ...++...+
T Consensus 203 ~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewk- 279 (1283)
T KOG1916|consen 203 KGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWK- 279 (1283)
T ss_pred CCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeeeeeeccccHhhhhccC-
Confidence 899999888765433 445567766665554 67 78888888888888877653 223444444
Q ss_pred cCCCCc-ceEEEEecCCCC---------cEEEEEec-CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee
Q 019117 170 AGGHRN-EVLSVDFHPSDI---------YRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 238 (346)
Q Consensus 170 ~~~~~~-~v~~~~~~~~~~---------~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (346)
.|.+ +-.|.-|+. .. .++++++. +..+++|.....+....+ ....+.....
T Consensus 280 --phd~~p~vC~lc~~-~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~---------------~~d~v~iV~p 341 (1283)
T KOG1916|consen 280 --PHDKHPRVCWLCHK-QEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDK---------------LIDGVQIVGP 341 (1283)
T ss_pred --CCCCCCceeeeecc-ccccCCccceeEEEEecccCCcceeEeeccchhhhhhh---------------cccceEeecC
Confidence 3542 222332442 21 23344433 456888876653322111 1122333334
Q ss_pred cccceEEEEec---CCEEEEEeecCeEEEEcCCC
Q 019117 239 HSNYVDCNRWL---GDFILSKSVDNEIVLWEPKM 269 (346)
Q Consensus 239 ~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~ 269 (346)
|...|+.+... -..+++.+.+++|.+|.=+.
T Consensus 342 ~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 342 HDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred CCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 55555543322 33566677788899986543
No 397
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.26 E-value=0.36 Score=36.94 Aligned_cols=99 Identities=10% Similarity=-0.018 Sum_probs=64.7
Q ss_pred CceEEEEEeCCCCceEEEeeCCCCEEEEe--cCCC-----eeEEEecccCCCC-cceEEEEecCCCCcEEEEEecCCeEE
Q 019117 129 DSINEIRTQPLKPSLVVSASKDESVRLWN--VQTG-----ICILIFAGAGGHR-NEVLSVDFHPSDIYRIASCGMDNTVK 200 (346)
Q Consensus 129 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd--~~~~-----~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~i~ 200 (346)
+.-+.++|+.+...+.+.-+.+-+|.-|| ..+| +.+..++..+... -..-.++..- ++.+.+++-..++|.
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~ 236 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQ 236 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEE
Confidence 34467888874444555667788887788 4444 3333333211111 1233455565 788888888889999
Q ss_pred EEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCC
Q 019117 201 IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD 251 (346)
Q Consensus 201 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 251 (346)
..|..+ ++.+..+..-...|+|++|-|.
T Consensus 237 ~~dp~t-----------------------GK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 237 KVDPTT-----------------------GKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred EECCCC-----------------------CcEEEEEEcCCCceEEEEecCC
Confidence 999998 4456666667889999999843
No 398
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.22 E-value=0.69 Score=41.60 Aligned_cols=108 Identities=10% Similarity=0.023 Sum_probs=68.5
Q ss_pred CCCCcEEEEeecCCeEEEEEccCcceeeeec-cCCCceEEEEEeCC-CCceEEEeeCCCCEEEEecC---------CCee
Q 019117 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPL-KPSLVVSASKDESVRLWNVQ---------TGIC 163 (346)
Q Consensus 95 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~---------~~~~ 163 (346)
.-++ ..++-+....+.|||...+.....-. ...+.|.++.|... +++.+++.+..+.|.++.-. +-..
T Consensus 39 s~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~ 117 (631)
T PF12234_consen 39 SIKK-IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAP 117 (631)
T ss_pred ccCc-EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccce
Confidence 3454 44444445689999998877433222 35788999999642 56778888888899988542 1123
Q ss_pred EEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117 164 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (346)
Q Consensus 164 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 206 (346)
++.+....-...+|.+..|.+ +|.+++.++ +.+.++|-.-
T Consensus 118 i~~i~i~~~T~h~Igds~Wl~-~G~LvV~sG--Nqlfv~dk~~ 157 (631)
T PF12234_consen 118 IRKIDISSHTPHPIGDSIWLK-DGTLVVGSG--NQLFVFDKWL 157 (631)
T ss_pred eEEEEeecCCCCCccceeEec-CCeEEEEeC--CEEEEECCCc
Confidence 444432212236899999997 777665543 5788876543
No 399
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.21 E-value=0.34 Score=43.43 Aligned_cols=128 Identities=14% Similarity=0.209 Sum_probs=77.1
Q ss_pred ccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117 20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI 98 (346)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (346)
.-.+....++...-....-+.-|. .++..++-++.. +.|||...+.. .--..+ ...+.|..+.|.+.|+|+
T Consensus 16 ~~~w~~t~~~~T~i~~~~li~gss----~~k~a~V~~~~~~LtIWD~~~~~l-E~~~~f---~~~~~I~dLDWtst~d~q 87 (631)
T PF12234_consen 16 KIEWLLTSTFETGISNPSLISGSS----IKKIAVVDSSRSELTIWDTRSGVL-EYEESF---SEDDPIRDLDWTSTPDGQ 87 (631)
T ss_pred eEEEEEEEEEecCCCCcceEeecc----cCcEEEEECCCCEEEEEEcCCcEE-EEeeee---cCCCceeeceeeecCCCC
Confidence 344555555544444444444443 233333333333 99999876652 222222 357889999999999999
Q ss_pred cEEEEeecCCeEEEEEcc-----Cc----ceeeee--ccCC-CceEEEEEeCCCCceEEEeeCCCCEEEEecC
Q 019117 99 PFLVAGGINGIIRVIDVS-----NE----KLHKSF--VGHG-DSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159 (346)
Q Consensus 99 ~~l~~~~~dg~i~iwd~~-----~~----~~~~~~--~~~~-~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 159 (346)
.+++.+..+.|.+|.-. .. ..++.+ ..|+ .+|.+..|.+ ++.+++.++ ..+.|+|-.
T Consensus 88 -siLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 88 -SILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred -EEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEec-CCeEEEEeC--CEEEEECCC
Confidence 66666778889888542 11 123322 3344 6899999998 666555443 568888743
No 400
>PHA03098 kelch-like protein; Provisional
Probab=96.18 E-value=0.77 Score=41.26 Aligned_cols=103 Identities=12% Similarity=0.041 Sum_probs=51.2
Q ss_pred CCCcEEEEeecC-----CeEEEEEccCccee--eeeccCCCceEEEEEeCCCCceEEEeeCC------CCEEEEecCCCe
Q 019117 96 DGIPFLVAGGIN-----GIIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKD------ESVRLWNVQTGI 162 (346)
Q Consensus 96 ~~~~~l~~~~~d-----g~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~ 162 (346)
+++ +++.|+.+ ..+..||..+.+-. ..+...... .+++.. ++.+++.|+.+ ..+..||+.+.+
T Consensus 342 ~~~-lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 342 NNR-IYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred CCE-EEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 455 77777754 35777887765422 112211111 122222 56777777732 357888987654
Q ss_pred eEEEecccCCCCcceEEEEecCCCCcEEEEEecCC--------eEEEEEccc
Q 019117 163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN--------TVKIWSMKE 206 (346)
Q Consensus 163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--------~i~iwd~~~ 206 (346)
-...-... ..... .+++.. ++.+++.||.+. .+.+||..+
T Consensus 418 W~~~~~~p-~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 418 WSKGSPLP-ISHYG-GCAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred eeecCCCC-ccccC-ceEEEE--CCEEEEECCccCCCCCcccceEEEecCCC
Confidence 32211100 01111 123333 566677776432 377788776
No 401
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.13 E-value=0.51 Score=37.52 Aligned_cols=168 Identities=10% Similarity=0.041 Sum_probs=102.2
Q ss_pred ceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccC-CCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee
Q 019117 85 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH-GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC 163 (346)
Q Consensus 85 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 163 (346)
.+.++.|+ |+.+ .|++..+...-.|+=..+|+.+++++-. -.....|.+.. ++++.++--.++.+.++.+.....
T Consensus 87 nvS~LTyn--p~~r-tLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 87 NVSSLTYN--PDTR-TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccceeeC--CCcc-eEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCCcc
Confidence 36667766 8888 6666666676677776788988887531 22345677776 777777777889998888765532
Q ss_pred EEEec-------ccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE
Q 019117 164 ILIFA-------GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 236 (346)
Q Consensus 164 ~~~~~-------~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (346)
...++ .........-.++|+| ....|+.+-+-.-+.||.+........... ...+-...
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~-------------~~~~~~~~ 228 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHA-------------SLDPTADR 228 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCccccccc-------------ccCccccc
Confidence 22221 1112256678999999 666666676767788877764221111100 00011111
Q ss_pred eecccceEEEEec---CCEEEEEeecCeEEEEcCCCC
Q 019117 237 SVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMK 270 (346)
Q Consensus 237 ~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~ 270 (346)
...-..|.++.|+ +.+++-+.+++.+.-.|....
T Consensus 229 ~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 229 DLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 1122346667776 567777777887877777654
No 402
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.04 E-value=0.041 Score=29.46 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=26.8
Q ss_pred CceEEEEEeCCCC--ceEEEeeCCCCEEEEecCC
Q 019117 129 DSINEIRTQPLKP--SLVVSASKDESVRLWNVQT 160 (346)
Q Consensus 129 ~~v~~~~~~~~~~--~~l~s~~~d~~i~iwd~~~ 160 (346)
+.|.+++|+|... .+|+-+-.-+.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998444 6888888889999999985
No 403
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.00 E-value=0.13 Score=48.18 Aligned_cols=115 Identities=14% Similarity=0.016 Sum_probs=76.3
Q ss_pred eEEEEEEEcCCCCcEEEEe--ecCCeEEEEEccCcce-----eeee------ccCCCceEEEEEeCCCCceEEEeeCCCC
Q 019117 86 FYTVSWACNVDGIPFLVAG--GINGIIRVIDVSNEKL-----HKSF------VGHGDSINEIRTQPLKPSLVVSASKDES 152 (346)
Q Consensus 86 v~~~~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~-----~~~~------~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 152 (346)
+..+.+...+|++ ..++. +++-.|..||+.+-.. ..-+ ........++.|+|.-....+....|+.
T Consensus 101 ~pi~~~v~~~D~t-~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 101 IPIVIFVCFHDAT-DSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred ccceEEEeccCCc-eEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 3344555557776 43333 3334788899865321 1111 1123456789999955666778888999
Q ss_pred EEEEecCCCe-eEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117 153 VRLWNVQTGI-CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (346)
Q Consensus 153 i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 206 (346)
|++..+.... ....+. .....++++|+| .+..++.|-..|++.-|...-
T Consensus 180 l~V~~~~~~~~~v~s~p----~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP----VTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred hhhhhhhhhhhhhcccC----cccceeeEEecc-ccceeeEecCCCeEEEeeccc
Confidence 9988775332 222332 567889999999 999999999999999887654
No 404
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.00 E-value=0.0015 Score=54.56 Aligned_cols=144 Identities=13% Similarity=0.147 Sum_probs=94.8
Q ss_pred EEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEe
Q 019117 88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF 167 (346)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 167 (346)
.+.+..-+++. -++.++.+..+..|| +.++...... .++....++|..+.+..++.+-..+.+.+||+.+.. ...+
T Consensus 37 pi~~~w~~e~~-nlavaca~tiv~~YD-~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey-tqqL 112 (615)
T KOG2247|consen 37 PIIHRWRPEGH-NLAVACANTIVIYYD-KAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY-TQQL 112 (615)
T ss_pred cceeeEecCCC-ceehhhhhhHHHhhh-hhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhh-HHHH
Confidence 34444447777 477777788899999 4455444443 455667888888445566667788999999997543 2222
Q ss_pred cccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEE
Q 019117 168 AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR 247 (346)
Q Consensus 168 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 247 (346)
.....+.... +.|++ +...++.+...|.+.+++....+ .+.....|...+++++
T Consensus 113 E~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgtsR-----------------------~iiv~Gkh~RRgtq~a 166 (615)
T KOG2247|consen 113 ESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGTSR-----------------------RIIVMGKHQRRGTQIA 166 (615)
T ss_pred hccCcchHHH--Hhhcc-CCccccccccccceEEEeccchh-----------------------hhhhhcccccceeEEE
Confidence 2211233333 77898 88888899899999999988722 2233344777778887
Q ss_pred ec-CCEEEEEeecCe
Q 019117 248 WL-GDFILSKSVDNE 261 (346)
Q Consensus 248 ~~-~~~l~~~~~d~~ 261 (346)
+. .++.+.++.|..
T Consensus 167 v~lEd~vil~dcd~~ 181 (615)
T KOG2247|consen 167 VTLEDYVILCDCDNT 181 (615)
T ss_pred ecccceeeecCcHHH
Confidence 77 556666555543
No 405
>PHA02790 Kelch-like protein; Provisional
Probab=96.00 E-value=1 Score=39.79 Aligned_cols=101 Identities=6% Similarity=-0.074 Sum_probs=50.7
Q ss_pred CCCCcEEEEeecC--CeEEEEEccCcc--eeeeeccCCCceEEEEEeCCCCceEEEeeCCC---CEEEEecCCCeeEEEe
Q 019117 95 VDGIPFLVAGGIN--GIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKDE---SVRLWNVQTGICILIF 167 (346)
Q Consensus 95 ~~~~~~l~~~~~d--g~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~ 167 (346)
.+|. +.+.|+.+ ..+..||..+.+ .+..+.........+.. ++.+.+.|+.++ .+..||.++.+-...-
T Consensus 317 ~~~~-iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~ 392 (480)
T PHA02790 317 ANNK-LYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQWQFGP 392 (480)
T ss_pred ECCE-EEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCEEEeCC
Confidence 4566 66777753 357788876543 22222211112222222 567778877653 4678888765433211
Q ss_pred cccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117 168 AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (346)
Q Consensus 168 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 206 (346)
.. ...... .+++.. ++.+.+.|+ .+.+||..+
T Consensus 393 ~m-~~~r~~-~~~~~~--~~~IYv~GG---~~e~ydp~~ 424 (480)
T PHA02790 393 ST-YYPHYK-SCALVF--GRRLFLVGR---NAEFYCESS 424 (480)
T ss_pred CC-CCcccc-ceEEEE--CCEEEEECC---ceEEecCCC
Confidence 10 001111 123222 566666663 567788765
No 406
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=0.42 Score=45.90 Aligned_cols=209 Identities=15% Similarity=0.052 Sum_probs=98.9
Q ss_pred EEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCC-CceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEe
Q 019117 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG-DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF 167 (346)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 167 (346)
..++++|.-. +++.+...|.|+++-...-+.....+... ..+..+.+-. ..........+..+.+|.......+.
T Consensus 39 ~~~afD~~q~-llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~-~~s~~~~l~~~~~~~~~~~~~~~~~~-- 114 (993)
T KOG1983|consen 39 SALAFDPTQG-LLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLV-GISRNLVLSDDDSLHLWSIKIKTGVF-- 114 (993)
T ss_pred cceeeccccc-eEEEEEecccEEEecccceEEEeccccccchhhhheeeee-cccccceeecccceeeecccccceee--
Confidence 4566678877 99999999999999754333222211111 1222222222 22223333444555556543222111
Q ss_pred cccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeec-----------------CCCCCCCCc--c
Q 019117 168 AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT-----------------DLPSKFPTK--Y 228 (346)
Q Consensus 168 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----------------~~~~~~~~~--~ 228 (346)
....+++....+ --.+ +-+ ..+.+++||..-.......-.... ......... .
T Consensus 115 -----~~~~~~~~~~~~-~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 186 (993)
T KOG1983|consen 115 -----LKQEITSFVTDP-PPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLIS 186 (993)
T ss_pred -----cCCcceeccCCC-Ccch-hcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceee
Confidence 223334443332 2222 333 666677766654111000000000 000000000 0
Q ss_pred ceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEE
Q 019117 229 VQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA 307 (346)
Q Consensus 229 ~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~ 307 (346)
.......+..+...+.+..+. ..-++.+...+.+-+|+..... ....+..... ..+.++ ..++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-----~~~~~~--~~~v 250 (993)
T KOG1983|consen 187 LPDAYLGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKY---------VQSAYLPNGQ-----LESRDG--SHFV 250 (993)
T ss_pred cccccccccccccccceeeeecCCCcceeeeeeeeeehhccccc---------chhhcccccc-----cCccCC--ceEE
Confidence 000012333444555555554 4455556666677777765433 1122211111 116666 7999
Q ss_pred EEcCCCcEEEEEcCCCCc
Q 019117 308 IGNREGKIFVWELQSSPP 325 (346)
Q Consensus 308 ~~~~dg~i~iwd~~~~~~ 325 (346)
++..||.+.+||+..++.
T Consensus 251 ~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 251 SYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred EEEecCCEEeeecCCCce
Confidence 999999999999999865
No 407
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.85 E-value=1.6 Score=40.81 Aligned_cols=118 Identities=14% Similarity=0.184 Sum_probs=68.3
Q ss_pred cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCc-c--ceEEEEEEEc--------------CCCCcEEEEeecCCeEE
Q 019117 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKE-E--SFYTVSWACN--------------VDGIPFLVAGGINGIIR 111 (346)
Q Consensus 50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~-~--~v~~~~~~~~--------------~~~~~~l~~~~~dg~i~ 111 (346)
..+..++.++ |.-.|..+|+.+..+......... . ....+++.-. ..+. .++.++.|+.+.
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~-rV~~~T~Dg~Li 273 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR-RIILPTSDARLI 273 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCC-EEEEecCCCeEE
Confidence 4455555544 999999998887766532211000 0 0011122101 1233 678888899999
Q ss_pred EEEccCcceeeeeccCCCceE-------------EEEEeCC-CCceEEEeeC----------CCCEEEEecCCCeeEEEe
Q 019117 112 VIDVSNEKLHKSFVGHGDSIN-------------EIRTQPL-KPSLVVSASK----------DESVRLWNVQTGICILIF 167 (346)
Q Consensus 112 iwd~~~~~~~~~~~~~~~~v~-------------~~~~~~~-~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~ 167 (346)
-.|.++|+....+.. .+.|. .+.-.|. .+..++.|+. +|.|+-+|.++|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998876642 22111 0111110 1235555542 688999999999999988
Q ss_pred cc
Q 019117 168 AG 169 (346)
Q Consensus 168 ~~ 169 (346)
..
T Consensus 353 ~~ 354 (764)
T TIGR03074 353 DP 354 (764)
T ss_pred ec
Confidence 63
No 408
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.81 E-value=1.4 Score=39.89 Aligned_cols=102 Identities=11% Similarity=-0.007 Sum_probs=54.5
Q ss_pred ceEEEEEEEcCCCCcEEEEee------cCC--eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCC------
Q 019117 85 SFYTVSWACNVDGIPFLVAGG------ING--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD------ 150 (346)
Q Consensus 85 ~v~~~~~~~~~~~~~~l~~~~------~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------ 150 (346)
.+...++ +|+|+ .++... .|. .|.+++.. +.......+ ...+.-.|+| ++..+++....
T Consensus 351 ~vsspai--SpdG~-~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWsp-DG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 351 NITSAAL--SRSGR-QVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSL-DADAVWVVVDGNTVVRV 423 (591)
T ss_pred CcccceE--CCCCC-EEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECC-CCCceEEEecCcceEEE
Confidence 3444444 48998 555443 244 45555542 222222232 2378889999 76766666432
Q ss_pred ------CCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEE
Q 019117 151 ------ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI 201 (346)
Q Consensus 151 ------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i 201 (346)
+.+.+.++..++... ...+.|..+.|+| ++..++... ++.|.+
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~------~~~g~Issl~wSp-DG~RiA~i~-~g~v~V 472 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS------RVPGPISELQLSR-DGVRAAMII-GGKVYL 472 (591)
T ss_pred eccCCCceEEEEeccCchhhh------ccCCCcCeEEECC-CCCEEEEEE-CCEEEE
Confidence 222222333222211 1345799999999 776665544 466666
No 409
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.80 E-value=0.14 Score=43.42 Aligned_cols=94 Identities=15% Similarity=0.175 Sum_probs=65.1
Q ss_pred cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCC---
Q 019117 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD--- 96 (346)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--- 96 (346)
.+......|......+.+|..+| ++.+.|+...-| |.++|+..+..++..+++.+.. +.|....+
T Consensus 295 ~~l~~r~~l~D~~R~~~~i~~sP----~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq-------c~wi~~~~~~~ 363 (415)
T PF14655_consen 295 APLPMRFGLPDSKREGESICLSP----SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ-------CGWIEVPEEGD 363 (415)
T ss_pred cccceEEeeccCCceEEEEEECC----CCCEEEEEcCCCcEEEEECCCChhhhhhccCccce-------EEEEEeecccc
Confidence 44555666677777899999999 677777775555 9999999999998888875432 22221111
Q ss_pred ---------------CCcEEEEeecCCeEEEEEccCcceeeeec
Q 019117 97 ---------------GIPFLVAGGINGIIRVIDVSNEKLHKSFV 125 (346)
Q Consensus 97 ---------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 125 (346)
...+++-+-..|.|.||.++++..+..+.
T Consensus 364 ~~~~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 364 RDRSNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred cccccccccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 11134445678999999999888776654
No 410
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.58 E-value=1 Score=36.71 Aligned_cols=153 Identities=10% Similarity=0.097 Sum_probs=78.7
Q ss_pred cCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc-eeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG-VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (346)
Q Consensus 31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 108 (346)
+-...+..+.-++ +|.++++++.+. ..-|+ .++ ....... .....+..+.|. |++. +.+ ....|
T Consensus 142 ~~~gs~~~~~r~~----dG~~vavs~~G~~~~s~~--~G~~~w~~~~r----~~~~riq~~gf~--~~~~-lw~-~~~Gg 207 (302)
T PF14870_consen 142 ETSGSINDITRSS----DGRYVAVSSRGNFYSSWD--PGQTTWQPHNR----NSSRRIQSMGFS--PDGN-LWM-LARGG 207 (302)
T ss_dssp S----EEEEEE-T----TS-EEEEETTSSEEEEE---TT-SS-EEEE------SSS-EEEEEE---TTS--EEE-EETTT
T ss_pred CCcceeEeEEECC----CCcEEEEECcccEEEEec--CCCccceEEcc----Cccceehhceec--CCCC-EEE-EeCCc
Confidence 3446677877776 889999998888 45555 232 2232222 145677777776 8876 444 44788
Q ss_pred eEEEEE-ccCcceeee----eccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEec
Q 019117 109 IIRVID-VSNEKLHKS----FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 183 (346)
Q Consensus 109 ~i~iwd-~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 183 (346)
.|+.=+ ....+.-.. +....-.+.+++|.+ +....++|+ .|.+ +.....|+.-+..+....-...++.+.|.
T Consensus 208 ~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~ 284 (302)
T PF14870_consen 208 QIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFV 284 (302)
T ss_dssp EEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS-SS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEE
T ss_pred EEEEccCCCCccccccccCCcccCceeeEEEEecC-CCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEc
Confidence 888877 222221111 112233478999998 666666555 4655 34556677666655333345678889997
Q ss_pred CCCCcEEEEEecCCeEEEE
Q 019117 184 PSDIYRIASCGMDNTVKIW 202 (346)
Q Consensus 184 ~~~~~~l~s~~~d~~i~iw 202 (346)
+ .. .-+..+.+|.|.-|
T Consensus 285 ~-~~-~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 285 N-PD-KGFVLGQDGVLLRY 301 (302)
T ss_dssp E-TT-EEEEE-STTEEEEE
T ss_pred C-CC-ceEEECCCcEEEEe
Confidence 5 43 44555678887665
No 411
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.53 E-value=0.92 Score=35.83 Aligned_cols=168 Identities=8% Similarity=-0.024 Sum_probs=98.1
Q ss_pred cceeeeeecccCC-CceEEEEEEeecCCCccEEEEEcCCc---EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCC
Q 019117 21 REYRVTNKLQEGK-RPLYAVVFNFIDSRYFNVFATVGGNR---VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD 96 (346)
Q Consensus 21 ~~~~~~~~~~~h~-~~v~~~~~~p~~~~~~~~la~~~~~~---v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 96 (346)
..++.+.++.... .-...+.|.. ++.++-+.+.-+ |+.+|+.+++......- ......+. ++.. +
T Consensus 31 ~~~~vv~~ypHd~~aFTQGL~~~~----~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l-~~~~FgEG---it~~---~ 99 (264)
T PF05096_consen 31 YSYEVVETYPHDPTAFTQGLEFLD----DGTLYESTGLYGQSSLRKVDLETGKVLQSVPL-PPRYFGEG---ITIL---G 99 (264)
T ss_dssp EEEEEEEEEE--TT-EEEEEEEEE----TTEEEEEECSTTEEEEEEEETTTSSEEEEEE--TTT--EEE---EEEE---T
T ss_pred eeeEEEEECCCCCcccCccEEecC----CCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC-Ccccccee---EEEE---C
Confidence 3567777764322 2345788855 578888777655 99999999886655431 11112222 3332 2
Q ss_pred CCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccC--CCC
Q 019117 97 GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG--GHR 174 (346)
Q Consensus 97 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~ 174 (346)
++ +..-.-.++...+||.++.+.+.++. ..+.=..++. ++..|+.......|.++|..+.+....+.... ..-
T Consensus 100 d~-l~qLTWk~~~~f~yd~~tl~~~~~~~-y~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv 174 (264)
T PF05096_consen 100 DK-LYQLTWKEGTGFVYDPNTLKKIGTFP-YPGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPV 174 (264)
T ss_dssp TE-EEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE-
T ss_pred CE-EEEEEecCCeEEEEccccceEEEEEe-cCCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEEC
Confidence 33 55555678999999999998888876 3455677773 44556655556789999998877776665321 112
Q ss_pred cceEEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117 175 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (346)
Q Consensus 175 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 206 (346)
..++-+.|. ++...+-.=....|..-|..+
T Consensus 175 ~~LNELE~i--~G~IyANVW~td~I~~Idp~t 204 (264)
T PF05096_consen 175 SNLNELEYI--NGKIYANVWQTDRIVRIDPET 204 (264)
T ss_dssp --EEEEEEE--TTEEEEEETTSSEEEEEETTT
T ss_pred CCcEeEEEE--cCEEEEEeCCCCeEEEEeCCC
Confidence 345667776 555555555555566666665
No 412
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.42 E-value=1.6 Score=37.81 Aligned_cols=112 Identities=14% Similarity=0.127 Sum_probs=63.5
Q ss_pred EEEEcCCCCcEEEEe-ecCC----eEEEEEccCcceeeeeccCCCceEEEEEeCCCCce-EEEeeCC----------CCE
Q 019117 90 SWACNVDGIPFLVAG-GING----IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSL-VVSASKD----------ESV 153 (346)
Q Consensus 90 ~~~~~~~~~~~l~~~-~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~s~~~d----------~~i 153 (346)
.+.++|+|+ ++|.+ +..| .++++|+.+++.+...-... ....+.|.+ ++.. +.+...+ ..|
T Consensus 128 ~~~~Spdg~-~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 128 GFSVSPDGK-RLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEETTTSS-EEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECT-TSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeECCCCC-EEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeC-CCCEEEEEEeCcccccccCCCCcEE
Confidence 677889999 66644 4444 59999999997665321111 123499999 5454 4444332 237
Q ss_pred EEEecCCCeeE--EEecccCCCCcceEEEEecCCCCcEEEE-EecC---CeEEEEEccc
Q 019117 154 RLWNVQTGICI--LIFAGAGGHRNEVLSVDFHPSDIYRIAS-CGMD---NTVKIWSMKE 206 (346)
Q Consensus 154 ~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~~~d---~~i~iwd~~~ 206 (346)
+.|.+.+...- ..+... ........+..++ ++++++. .... ..+.+.|+..
T Consensus 205 ~~~~~gt~~~~d~lvfe~~-~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEP-DEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp EEEETTS-GGG-EEEEC-T-TCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCC
T ss_pred EEEECCCChHhCeeEEeec-CCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccc
Confidence 78887665432 334321 1222256788887 6666554 3332 3466667665
No 413
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.22 E-value=0.19 Score=38.92 Aligned_cols=80 Identities=13% Similarity=0.142 Sum_probs=52.5
Q ss_pred ceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCcc-cccccccc----CCCcCeeEEEEeecCCcceEEEEcCCCcEE
Q 019117 242 YVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGT-ADILQKYP----VPECDIWFIKFSCDFHYNAAAIGNREGKIF 316 (346)
Q Consensus 242 ~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~----~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~ 316 (346)
.+..+...++++++.+.+|.+++||+.+.+....... ...+.... .....|..+.++.+| .-+++-+ +|..+
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G--~PiV~ls-ng~~y 90 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG--VPIVTLS-NGDSY 90 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC--CEEEEEe-CCCEE
Confidence 3444555589999999999999999998875322211 11111100 345678889999887 4455544 57889
Q ss_pred EEEcCCCC
Q 019117 317 VWELQSSP 324 (346)
Q Consensus 317 iwd~~~~~ 324 (346)
.|+..-+.
T Consensus 91 ~y~~~L~~ 98 (219)
T PF07569_consen 91 SYSPDLGC 98 (219)
T ss_pred Eeccccce
Confidence 99876654
No 414
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.98 Score=34.04 Aligned_cols=106 Identities=18% Similarity=0.072 Sum_probs=63.9
Q ss_pred CCCcEEEEeec--CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCC
Q 019117 96 DGIPFLVAGGI--NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGH 173 (346)
Q Consensus 96 ~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 173 (346)
+|. ++.+.+. ...|++||+.+++.+....-....+..=-....+.....-.-.+|.-..+|.++-+.+..+. .
T Consensus 55 ~g~-i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~----y 129 (262)
T COG3823 55 DGH-ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS----Y 129 (262)
T ss_pred CCE-EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc----c
Confidence 444 6666654 34799999999987665442221221111111123333344567888899999888888776 6
Q ss_pred CcceEEEEecCCCCcEEEEEecCCeEEEEEccccce
Q 019117 174 RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT 209 (346)
Q Consensus 174 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 209 (346)
++.=..++-. +.+ |+.+....+++.-|..++..
T Consensus 130 ~GeGWgLt~d--~~~-LimsdGsatL~frdP~tfa~ 162 (262)
T COG3823 130 EGEGWGLTSD--DKN-LIMSDGSATLQFRDPKTFAE 162 (262)
T ss_pred CCcceeeecC--Ccc-eEeeCCceEEEecCHHHhhh
Confidence 6666777653 444 55555556788877777543
No 415
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.18 E-value=2.2 Score=38.15 Aligned_cols=114 Identities=13% Similarity=0.046 Sum_probs=65.5
Q ss_pred ccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEE-----EEEEcCCCCcEEEEeecCCeEEEEEccCcceeee
Q 019117 49 FNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTV-----SWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS 123 (346)
Q Consensus 49 ~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 123 (346)
+.++++...+.|.-+|..+++.+.....-... ......+. ..+. .+. .++.++.++.|.-.|..+|+.+..
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~-~~~~~~~~~~~~rg~av--~~~-~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPD-DVIPVMCCDVVNRGVAL--YDG-KVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCc-ccccccccccccccceE--ECC-EEEEEcCCCEEEEEECCCCCEEee
Confidence 44444444445889999998877665431110 00000000 0011 123 577788899999999999998876
Q ss_pred eccC--CC--ceEE-EEEeCCCCceEEEee------CCCCEEEEecCCCeeEEEecc
Q 019117 124 FVGH--GD--SINE-IRTQPLKPSLVVSAS------KDESVRLWNVQTGICILIFAG 169 (346)
Q Consensus 124 ~~~~--~~--~v~~-~~~~~~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~ 169 (346)
.... .. .+.+ -... ++ .++.+. .+|.|..+|.++|+.+..+..
T Consensus 146 ~~~~~~~~~~~~tssP~v~--~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVV--KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred cccccccccccccCCcEEE--CC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 5421 10 1111 1111 33 444443 268999999999999988764
No 416
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.17 E-value=0.93 Score=39.79 Aligned_cols=119 Identities=17% Similarity=0.125 Sum_probs=66.2
Q ss_pred CccceEEEEEEEc-CCCCcEEEEeecCCeEEEEEccC-----cceeeeeccC---CCc--eEEEEEeCCCCceEEEeeCC
Q 019117 82 KEESFYTVSWACN-VDGIPFLVAGGINGIIRVIDVSN-----EKLHKSFVGH---GDS--INEIRTQPLKPSLVVSASKD 150 (346)
Q Consensus 82 ~~~~v~~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~---~~~--v~~~~~~~~~~~~l~s~~~d 150 (346)
.-+.|..++|++- ..+.+.|++......|.||-+.. .+.+.....+ .-+ -..+.|+| ....|+.-...
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~ 133 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTAR 133 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecC
Confidence 3356777999832 11222455556678999999752 2222111111 111 23577999 66666655544
Q ss_pred CCEEEEecCCCe--eEEEecccCCCCcceEEEEecCCCCcEEEEE-ecCCeEEEEEccc
Q 019117 151 ESVRLWNVQTGI--CILIFAGAGGHRNEVLSVDFHPSDIYRIASC-GMDNTVKIWSMKE 206 (346)
Q Consensus 151 ~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~ 206 (346)
..-.+.+++... ....++ ..+.|.|.+|.+ +|..|+.+ +..=.-++||-..
T Consensus 134 dvSV~~sV~~d~srVkaDi~----~~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADIK----TSGLIHCACWTK-DGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred ceeEeeeeeeCCceEEEecc----CCceEEEEEecC-cCCEEEEEeCCeEEEEEecCch
Confidence 433456665333 223333 678999999998 65555544 4433456676543
No 417
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.09 E-value=0.19 Score=47.24 Aligned_cols=147 Identities=12% Similarity=0.011 Sum_probs=85.0
Q ss_pred ceEEEEEEeecCCCccE--EEEEcCCc-EEEEEeccCcee-----eeEeeeecCCCccce--EEEEEEEcCCCCcEEEEe
Q 019117 35 PLYAVVFNFIDSRYFNV--FATVGGNR-VTVYQCLEGGVI-----AALQSYVDEDKEESF--YTVSWACNVDGIPFLVAG 104 (346)
Q Consensus 35 ~v~~~~~~p~~~~~~~~--la~~~~~~-v~i~~~~~~~~~-----~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~l~~~ 104 (346)
+|..+...+ |+.. ++..+.+. |..||+.+-... ..+..+.. .....+ .++.|.+.+.- ..+..
T Consensus 102 pi~~~v~~~----D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~t-s~ek~vf~~~~~wnP~vp~--n~av~ 174 (1405)
T KOG3630|consen 102 PIVIFVCFH----DATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSAT-SFEKPVFQLKNVWNPLVPL--NSAVD 174 (1405)
T ss_pred cceEEEecc----CCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccc-hhccccccccccccCCccc--hhhhh
Confidence 455555555 3333 33333433 889998743221 11111110 112223 33445433333 46677
Q ss_pred ecCCeEEEEEccCcce-eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCC-CcceEEEEe
Q 019117 105 GINGIIRVIDVSNEKL-HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGH-RNEVLSVDF 182 (346)
Q Consensus 105 ~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~ 182 (346)
..|+.|++..+..... +..++ -...+++++|+| .+..++.|-..|++.-|... .+....+...... ...|.+|+|
T Consensus 175 l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~W 251 (1405)
T KOG3630|consen 175 LSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTW 251 (1405)
T ss_pred ccccchhhhhhhhhhhhhcccC-cccceeeEEecc-ccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEE
Confidence 7799999887654332 22333 456789999999 99999999999999988754 4444444432222 478999999
Q ss_pred cCCCCcEEEE
Q 019117 183 HPSDIYRIAS 192 (346)
Q Consensus 183 ~~~~~~~l~s 192 (346)
.. ...+++.
T Consensus 252 l~-t~eflvv 260 (1405)
T KOG3630|consen 252 LS-TQEFLVV 260 (1405)
T ss_pred ec-ceeEEEE
Confidence 85 5454443
No 418
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=95.06 E-value=1.8 Score=36.42 Aligned_cols=158 Identities=13% Similarity=0.117 Sum_probs=87.5
Q ss_pred EEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE-EEEeec-C---CeEE
Q 019117 37 YAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF-LVAGGI-N---GIIR 111 (346)
Q Consensus 37 ~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-l~~~~~-d---g~i~ 111 (346)
-+|-.+|.+|....++.|--..++.+||+. |+.+..+.. ..-..| .+...+.-+|+.. |+.++. + ..|+
T Consensus 57 PAIWvnp~dp~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~----Gr~NNV-Dvrygf~l~g~~vDlavas~R~~g~n~l~ 130 (381)
T PF02333_consen 57 PAIWVNPADPAKSLIIGTDKKGGLYVYDLD-GKELQSLPV----GRPNNV-DVRYGFPLNGKTVDLAVASDRSDGRNSLR 130 (381)
T ss_dssp EEEE--SS-GGG-EEEEEETTTEEEEEETT-S-EEEEE-S----S-EEEE-EEEEEEEETTEEEEEEEEEE-CCCT-EEE
T ss_pred CcEecCCCCcccceEEEEeCCCCEEEEcCC-CcEEEeecC----CCccee-eeecceecCCceEEEEEEecCcCCCCeEE
Confidence 357778877755555555555569999964 555554431 111222 1222233345422 444442 2 4799
Q ss_pred EEEccC--cceeeeecc-------CCCceEEEEEe--CCCC-ceEEEeeCCCCEEEEecC---CC----eeEEEecccCC
Q 019117 112 VIDVSN--EKLHKSFVG-------HGDSINEIRTQ--PLKP-SLVVSASKDESVRLWNVQ---TG----ICILIFAGAGG 172 (346)
Q Consensus 112 iwd~~~--~~~~~~~~~-------~~~~v~~~~~~--~~~~-~~l~s~~~d~~i~iwd~~---~~----~~~~~~~~~~~ 172 (346)
+|.+.. +. +..+.. ....+..+++. |.++ -+++....+|.+..|.+. .+ +.++.|.
T Consensus 131 ~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~---- 205 (381)
T PF02333_consen 131 LFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK---- 205 (381)
T ss_dssp EEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----
T ss_pred EEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec----
Confidence 998753 33 222221 12345666663 4233 366677888988888774 23 4577776
Q ss_pred CCcceEEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117 173 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (346)
Q Consensus 173 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 206 (346)
-.+.+..|.... ....|+.+-++.-|.-|+.+.
T Consensus 206 ~~sQ~EGCVVDD-e~g~LYvgEE~~GIW~y~Aep 238 (381)
T PF02333_consen 206 VGSQPEGCVVDD-ETGRLYVGEEDVGIWRYDAEP 238 (381)
T ss_dssp -SS-EEEEEEET-TTTEEEEEETTTEEEEEESSC
T ss_pred CCCcceEEEEec-ccCCEEEecCccEEEEEecCC
Confidence 456889999986 777888888887777777664
No 419
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.06 E-value=1.1 Score=37.93 Aligned_cols=55 Identities=9% Similarity=-0.042 Sum_probs=30.1
Q ss_pred cCeeEEEEeecCCcceEEEEcC------------------CCcEEEEEcCCCCcceeeeee-eeEEEEEecCCCCC
Q 019117 290 CDIWFIKFSCDFHYNAAAIGNR------------------EGKIFVWELQSSPPVLIARLI-CFSLHVKYNPQSVY 346 (346)
Q Consensus 290 ~~v~~~~~s~~~~~~~l~~~~~------------------dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~spdg~~ 346 (346)
.....++|.||+. -++..++. .|.|.-++..+++. ..+... ..+..++|+|+|++
T Consensus 124 ~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l 197 (367)
T TIGR02604 124 HSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDV 197 (367)
T ss_pred ccccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCE
Confidence 3477899999983 23333321 13455555555442 222211 12467999998863
No 420
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.95 E-value=0.0029 Score=52.97 Aligned_cols=140 Identities=19% Similarity=0.234 Sum_probs=90.5
Q ss_pred EEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEc
Q 019117 37 YAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDV 115 (346)
Q Consensus 37 ~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 115 (346)
....|-|. +++ ++.++.+. +..|| ..++...... .......++|. .++...++.+-..+.+.+||+
T Consensus 38 i~~~w~~e---~~n-lavaca~tiv~~YD-~agq~~le~n------~tg~aldm~wD--kegdvlavlAek~~piylwd~ 104 (615)
T KOG2247|consen 38 IIHRWRPE---GHN-LAVACANTIVIYYD-KAGQVILELN------PTGKALDMAWD--KEGDVLAVLAEKTGPIYLWDV 104 (615)
T ss_pred ceeeEecC---CCc-eehhhhhhHHHhhh-hhcceecccC------CchhHhhhhhc--cccchhhhhhhcCCCeeechh
Confidence 34566662 334 66666666 88888 3344333322 22333335555 577656777778899999999
Q ss_pred cCcceeeeecc--CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEE
Q 019117 116 SNEKLHKSFVG--HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC 193 (346)
Q Consensus 116 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 193 (346)
.+....+.-.+ |... -+.|++ +...++.+...|.+.|++..+.+.+.... .|...++++++.+ . .+.+.+
T Consensus 105 n~eytqqLE~gg~~s~s--ll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~G---kh~RRgtq~av~l-E-d~vil~ 176 (615)
T KOG2247|consen 105 NSEYTQQLESGGTSSKS--LLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMG---KHQRRGTQIAVTL-E-DYVILC 176 (615)
T ss_pred hhhhHHHHhccCcchHH--HHhhcc-CCccccccccccceEEEeccchhhhhhhc---ccccceeEEEecc-c-ceeeec
Confidence 76542221111 2333 278998 88888888899999999988777666554 4899999999997 3 345555
Q ss_pred ecCC
Q 019117 194 GMDN 197 (346)
Q Consensus 194 ~~d~ 197 (346)
+.|.
T Consensus 177 dcd~ 180 (615)
T KOG2247|consen 177 DCDN 180 (615)
T ss_pred CcHH
Confidence 5554
No 421
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.95 E-value=0.8 Score=31.81 Aligned_cols=109 Identities=8% Similarity=-0.032 Sum_probs=66.3
Q ss_pred EEEEeCCCCceEEEeeCCCCEEEEecCCC--------eeEEEecccCCCCcceEEEEecC----CCCcEEEEEecCCeEE
Q 019117 133 EIRTQPLKPSLVVSASKDESVRLWNVQTG--------ICILIFAGAGGHRNEVLSVDFHP----SDIYRIASCGMDNTVK 200 (346)
Q Consensus 133 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~s~~~d~~i~ 200 (346)
.-+|.. ....|+.++.-|+|.|.+.... ..+..+. -...|++++--+ .+...|+.|+ ...+.
T Consensus 3 iGkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN----in~~italaaG~l~~~~~~D~LliGt-~t~ll 76 (136)
T PF14781_consen 3 IGKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN----INQEITALAAGRLKPDDGRDCLLIGT-QTSLL 76 (136)
T ss_pred EEEeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEE----CCCceEEEEEEecCCCCCcCEEEEec-cceEE
Confidence 345555 4557888888899999987633 3445554 566777776443 2356666666 46899
Q ss_pred EEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-----CCEEEEEeecCeEEEEcCCCCC
Q 019117 201 IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-----GDFILSKSVDNEIVLWEPKMKE 271 (346)
Q Consensus 201 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~ 271 (346)
.||+..... ++.. .-++.|.++.+- ..-++..+.+..|.=||....+
T Consensus 77 aYDV~~N~d-----------------------~Fyk-e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 77 AYDVENNSD-----------------------LFYK-EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred EEEcccCch-----------------------hhhh-hCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 999988322 2211 223556666663 2345555555677777765443
No 422
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=94.91 E-value=0.088 Score=28.16 Aligned_cols=42 Identities=7% Similarity=0.010 Sum_probs=30.7
Q ss_pred ecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEec
Q 019117 299 CDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYN 341 (346)
Q Consensus 299 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~s 341 (346)
|+++ .++++...++.|.++|..+++.+........+..+.|+
T Consensus 1 pd~~-~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGT-KLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCC-EEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 3453 35566667899999999988877777776667777764
No 423
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.71 E-value=0.11 Score=43.65 Aligned_cols=229 Identities=14% Similarity=0.157 Sum_probs=120.3
Q ss_pred EEEEEcCCCCcEEEEeecCCeEEEEEccCcc----eeeeeccCCCc-eEE----EEEeCCCCceEEEeeCCCCEEEEecC
Q 019117 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEK----LHKSFVGHGDS-INE----IRTQPLKPSLVVSASKDESVRLWNVQ 159 (346)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~-v~~----~~~~~~~~~~l~s~~~d~~i~iwd~~ 159 (346)
+.|+-.|.|+..++.|..||.+.+....-.. +-..+.....+ -.. ..-+| ..++.+....+....++|..
T Consensus 118 v~wa~~~~gqp~~alglsngqv~v~qp~~s~t~p~pg~~Fp~g~~p~aLd~qgr~leh~-~~~lalA~~~~~qf~~~~~t 196 (733)
T COG4590 118 VLWAQTPPGQPWFALGLSNGQVAVVQPQLSHTMPTPGREFPPGLEPLALDEQGRLLEHP-LQQLALALTAEAQFATYDNT 196 (733)
T ss_pred cccccCCCCCceEEEeccCCeEEEEeccccccCCCCCccCCCCCCccccCcccCcccch-HHHhhhccchhhHHHHhhhh
Confidence 5677677888899999999999998643110 11111100000 000 01111 12233344444444444432
Q ss_pred C------------CeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCc
Q 019117 160 T------------GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK 227 (346)
Q Consensus 160 ~------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 227 (346)
. ++.+..+. .....|..+-..| +++.+..-+. ..+.++++.+......+-..... ..
T Consensus 197 ~~~~~L~g~~t~q~e~i~~L~---~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dsp------g~ 265 (733)
T COG4590 197 QQIQILRGDRTTQQEIIRLLS---VPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSP------GD 265 (733)
T ss_pred hhhhhhhcccCchhhhhhhcC---CCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCC------Cc
Confidence 2 12222232 3456777888999 8887776654 68899998873221111100000 00
Q ss_pred cceeceEEEeecccceE-EEE-ec-CCEEEEEeecCeEEEE-cCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCc
Q 019117 228 YVQFPVFIASVHSNYVD-CNR-WL-GDFILSKSVDNEIVLW-EPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY 303 (346)
Q Consensus 228 ~~~~~~~~~~~~~~~i~-~~~-~~-~~~l~~~~~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 303 (346)
....|+ .+. .+ |..+++++.||.|.-| |.+.... .+...++.++.....+.. ..|+...
T Consensus 266 -----------~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~----p~l~h~R~f~l~pa~~~~--l~pe~~r 328 (733)
T COG4590 266 -----------SRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQ----PHLNHIRNFKLAPAEVQF--LLPETNR 328 (733)
T ss_pred -----------hHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCC----CcceeeeccccCccccee--ecccccc
Confidence 000011 011 11 5678889999999887 4443321 122233333333333333 3344443
Q ss_pred ceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117 304 NAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 304 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~ 346 (346)
+-+++-+.+|.+..+.....+++.....-..+..+++||.+.|
T Consensus 329 kgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~ 371 (733)
T COG4590 329 KGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAY 371 (733)
T ss_pred ceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccch
Confidence 6788889999999988776666555444445677889998764
No 424
>PRK13684 Ycf48-like protein; Provisional
Probab=94.70 E-value=2.2 Score=35.67 Aligned_cols=154 Identities=8% Similarity=-0.016 Sum_probs=82.9
Q ss_pred CCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccC-ceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 019117 33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEG-GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (346)
Q Consensus 33 ~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 111 (346)
...++++.+.| ++.+++++..+.+. -....+ +....+.. .....++.+.+. ++++ .++++ ..|.+.
T Consensus 172 ~g~~~~i~~~~----~g~~v~~g~~G~i~-~s~~~gg~tW~~~~~----~~~~~l~~i~~~--~~g~-~~~vg-~~G~~~ 238 (334)
T PRK13684 172 AGVVRNLRRSP----DGKYVAVSSRGNFY-STWEPGQTAWTPHQR----NSSRRLQSMGFQ--PDGN-LWMLA-RGGQIR 238 (334)
T ss_pred cceEEEEEECC----CCeEEEEeCCceEE-EEcCCCCCeEEEeeC----CCcccceeeeEc--CCCC-EEEEe-cCCEEE
Confidence 34678888887 56677666555432 221222 33333322 134556666655 7777 55554 567665
Q ss_pred EEEccCcceeeeecc----CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117 112 VIDVSNEKLHKSFVG----HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI 187 (346)
Q Consensus 112 iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 187 (346)
+=..+.++.-..... ....+.++.+.+ ++..++ ++.+|.+. .....++.-........-....+.+.|.. +.
T Consensus 239 ~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~-~~ 314 (334)
T PRK13684 239 FNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLD-PE 314 (334)
T ss_pred EccCCCCCccccccCCccccccceeeEEEcC-CCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeC-CC
Confidence 433344432222111 223578889988 555544 55567654 44455555444431112234677788774 55
Q ss_pred cEEEEEecCCeEEEEEc
Q 019117 188 YRIASCGMDNTVKIWSM 204 (346)
Q Consensus 188 ~~l~s~~~d~~i~iwd~ 204 (346)
.. +..+..|.|..|+-
T Consensus 315 ~~-~~~G~~G~il~~~~ 330 (334)
T PRK13684 315 KG-FVLGQRGVLLRYVG 330 (334)
T ss_pred ce-EEECCCceEEEecC
Confidence 54 44566788877753
No 425
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.65 E-value=1.3 Score=38.96 Aligned_cols=125 Identities=11% Similarity=0.023 Sum_probs=69.6
Q ss_pred cCCCceEEEEEEeecCCCc-cEEEEEcCCcEEEEEecc--CceeeeEeeeecCCCcc--ceEEEEEEEcCCCCcEEEEee
Q 019117 31 EGKRPLYAVVFNFIDSRYF-NVFATVGGNRVTVYQCLE--GGVIAALQSYVDEDKEE--SFYTVSWACNVDGIPFLVAGG 105 (346)
Q Consensus 31 ~h~~~v~~~~~~p~~~~~~-~~la~~~~~~v~i~~~~~--~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~l~~~~ 105 (346)
|.-+.|..+.|.|....+- .+||+--...|.||.+.. .+.-+.+.....+ ..+ ++..-.+.++|... .|++-.
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcE-i~e~~pvLpQGCVWHPk~~-iL~VLT 131 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCE-IREPFPVLPQGCVWHPKKA-ILTVLT 131 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeee-ccCCcccCCCcccccCCCc-eEEEEe
Confidence 4456799999999544333 677777777799999862 1111111111100 111 11111222337666 666665
Q ss_pred cCCeEEEEEccC--cceeeeeccCCCceEEEEEeCCCCceEE-EeeCCCCEEEEecC
Q 019117 106 INGIIRVIDVSN--EKLHKSFVGHGDSINEIRTQPLKPSLVV-SASKDESVRLWNVQ 159 (346)
Q Consensus 106 ~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~i~iwd~~ 159 (346)
....=.++++.. .+....++ ..+-|.|.+|.+ +++.|+ +.+..=.-++||-.
T Consensus 132 ~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTK-DGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cCceeEeeeeeeCCceEEEecc-CCceEEEEEecC-cCCEEEEEeCCeEEEEEecCc
Confidence 554444555533 33444454 567899999999 555544 44544566788854
No 426
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.51 E-value=2 Score=34.29 Aligned_cols=148 Identities=16% Similarity=0.101 Sum_probs=80.9
Q ss_pred ceEEEEEEeecCCCccEEEEEc--CCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117 35 PLYAVVFNFIDSRYFNVFATVG--GNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (346)
Q Consensus 35 ~v~~~~~~p~~~~~~~~la~~~--~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 112 (346)
.+...++++ ++..+|... .++-.+|-...+.....+. ....+..-+|. +++. ..+....+...++
T Consensus 25 ~~~s~AvS~----dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~------~g~~l~~PS~d--~~g~-~W~v~~~~~~~~~ 91 (253)
T PF10647_consen 25 DVTSPAVSP----DGSRVAAVSEGDGGRSLYVGPAGGPVRPVL------TGGSLTRPSWD--PDGW-VWTVDDGSGGVRV 91 (253)
T ss_pred cccceEECC----CCCeEEEEEEcCCCCEEEEEcCCCcceeec------cCCcccccccc--CCCC-EEEEEcCCCceEE
Confidence 678899998 677776655 4554444444444333332 12244445555 7776 5555555666666
Q ss_pred EE-ccCccee-eeecc--CCCceEEEEEeCCCCceEEEee---CCCCEEEEecC---CC--eeE-EEecccCCCCcceEE
Q 019117 113 ID-VSNEKLH-KSFVG--HGDSINEIRTQPLKPSLVVSAS---KDESVRLWNVQ---TG--ICI-LIFAGAGGHRNEVLS 179 (346)
Q Consensus 113 wd-~~~~~~~-~~~~~--~~~~v~~~~~~~~~~~~l~s~~---~d~~i~iwd~~---~~--~~~-~~~~~~~~~~~~v~~ 179 (346)
+. ..+++.. ..+.. -...|..+.++| ++..++... .++.|.+--+. .+ ..+ ..+.........+..
T Consensus 92 ~~~~~~g~~~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~ 170 (253)
T PF10647_consen 92 VRDSASGTGEPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTD 170 (253)
T ss_pred EEecCCCcceeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCccee
Confidence 63 3333321 12221 122899999999 666665544 34667666543 22 111 111111123568899
Q ss_pred EEecCCCCcEEEEEecCC
Q 019117 180 VDFHPSDIYRIASCGMDN 197 (346)
Q Consensus 180 ~~~~~~~~~~l~s~~~d~ 197 (346)
++|.+ +..+++.+...+
T Consensus 171 v~W~~-~~~L~V~~~~~~ 187 (253)
T PF10647_consen 171 VAWSD-DSTLVVLGRSAG 187 (253)
T ss_pred eeecC-CCEEEEEeCCCC
Confidence 99997 666666655443
No 427
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.44 E-value=1.7 Score=33.14 Aligned_cols=122 Identities=11% Similarity=0.148 Sum_probs=65.9
Q ss_pred ceEEEeeCCCCEEEEecC--CCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCC------eEEEE-Ecccc--cee
Q 019117 142 SLVVSASKDESVRLWNVQ--TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN------TVKIW-SMKEF--WTY 210 (346)
Q Consensus 142 ~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~------~i~iw-d~~~~--~~~ 210 (346)
+.|+.+...+.|.+|++. ..+.+..|. .-+.|..+.++. .|++++|--.+. .+|+| +.+.. ...
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~----Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~ 103 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS----TVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENS 103 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc----chhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCC
Confidence 444444556789999988 445666665 568999999997 899999864332 45553 22221 111
Q ss_pred eeeceeecCCCCC---CCCccceeceEEEee--cccceEEEEecCCEEEEEeecCeEEEEcCCCCC
Q 019117 211 VEKSFTWTDLPSK---FPTKYVQFPVFIASV--HSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKE 271 (346)
Q Consensus 211 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 271 (346)
.. .....+++.. ......+..+..+.. .+..|.|+...|++++.+ ++++.+|.+....
T Consensus 104 ~v-~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 104 PV-RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQT 166 (215)
T ss_pred cE-EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEE
Confidence 11 1111121111 111111223333333 333445555558877643 4689999887654
No 428
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.39 E-value=2.3 Score=34.69 Aligned_cols=235 Identities=11% Similarity=0.040 Sum_probs=102.0
Q ss_pred eEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEc
Q 019117 36 LYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDV 115 (346)
Q Consensus 36 v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 115 (346)
.++|.|.. ...+++| ..++.+.....++....+..- ..... ....+... .++. .++ ++..|.| |..
T Consensus 64 l~~I~f~~-----~~g~ivG-~~g~ll~T~DgG~tW~~v~l~-~~lpg-s~~~i~~l--~~~~-~~l-~~~~G~i--y~T 129 (302)
T PF14870_consen 64 LNSISFDG-----NEGWIVG-EPGLLLHTTDGGKTWERVPLS-SKLPG-SPFGITAL--GDGS-AEL-AGDRGAI--YRT 129 (302)
T ss_dssp EEEEEEET-----TEEEEEE-ETTEEEEESSTTSS-EE-----TT-SS--EEEEEEE--ETTE-EEE-EETT--E--EEE
T ss_pred EEEEEecC-----CceEEEc-CCceEEEecCCCCCcEEeecC-CCCCC-CeeEEEEc--CCCc-EEE-EcCCCcE--EEe
Confidence 56677753 3455554 455655555556655554311 11112 22222222 3333 333 3444543 333
Q ss_pred -cCccee-eeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEE
Q 019117 116 -SNEKLH-KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC 193 (346)
Q Consensus 116 -~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 193 (346)
+.++.- .......+.+..+..++ ++.+++++..-.-..-||.-...-...-+ .....|..|.|.| ++.+.+.+
T Consensus 130 ~DgG~tW~~~~~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r---~~~~riq~~gf~~-~~~lw~~~ 204 (302)
T PF14870_consen 130 TDGGKTWQAVVSETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNR---NSSRRIQSMGFSP-DGNLWMLA 204 (302)
T ss_dssp SSTTSSEEEEE-S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE-----SSS-EEEEEE-T-TS-EEEEE
T ss_pred CCCCCCeeEcccCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEcc---CccceehhceecC-CCCEEEEe
Confidence 333322 22334457788888888 88888887665555577753221111112 3568999999998 76665544
Q ss_pred ecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEcCCCCCC
Q 019117 194 GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQ 272 (346)
Q Consensus 194 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~ 272 (346)
..|.|++=+......... .++.......-.+..++|. .+.+.+++..|.+ +...+.++.
T Consensus 205 -~Gg~~~~s~~~~~~~~w~------------------~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGkt 264 (302)
T PF14870_consen 205 -RGGQIQFSDDPDDGETWS------------------EPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKT 264 (302)
T ss_dssp -TTTEEEEEE-TTEEEEE---------------------B-TTSS--S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS
T ss_pred -CCcEEEEccCCCCccccc------------------cccCCcccCceeeEEEEecCCCCEEEEeCCccE-EEeCCCCcc
Confidence 788888876222111000 0011111122336778887 4555556666644 444555541
Q ss_pred CCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117 273 SPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (346)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw 318 (346)
.+.......-...+..+.|.++. + -.+.+.+|.|.-|
T Consensus 265 ------W~~~~~~~~~~~n~~~i~f~~~~--~-gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 265 ------WQKDRVGENVPSNLYRIVFVNPD--K-GFVLGQDGVLLRY 301 (302)
T ss_dssp -------EE-GGGTTSSS---EEEEEETT--E-EEEE-STTEEEEE
T ss_pred ------ceECccccCCCCceEEEEEcCCC--c-eEEECCCcEEEEe
Confidence 11222222223467888898765 2 3344567877655
No 429
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.20 E-value=3.3 Score=38.00 Aligned_cols=125 Identities=11% Similarity=0.029 Sum_probs=75.1
Q ss_pred CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec----CCEEEEEeecCe
Q 019117 186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL----GDFILSKSVDNE 261 (346)
Q Consensus 186 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~d~~ 261 (346)
+...|+.|..||.|.+|.+...-............. .......|...+. -......++++ .+++|+++....
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~---~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~ 188 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSG---FSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQE 188 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccc---cccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCce
Confidence 567889999999999999876432222220000000 0001122333333 23367788876 568888888888
Q ss_pred EEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCC---c-ceEEEEcCCCcEEEEEc
Q 019117 262 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH---Y-NAAAIGNREGKIFVWEL 320 (346)
Q Consensus 262 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~-~~l~~~~~dg~i~iwd~ 320 (346)
|.||-........ ....-..+...|.+++|-++.. + ..|++++-.|.+.+|++
T Consensus 189 VTVFaf~l~~~r~------~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 189 VTVFAFALVDERF------YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEEEecccccc------ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888766532110 0111112556789999988762 1 27888999999999888
No 430
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.86 E-value=3.4 Score=34.53 Aligned_cols=264 Identities=14% Similarity=0.065 Sum_probs=114.5
Q ss_pred ceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeee--cCCCccceEEEEEEEcCC---CCcEEEEeec-C-
Q 019117 35 PLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYV--DEDKEESFYTVSWACNVD---GIPFLVAGGI-N- 107 (346)
Q Consensus 35 ~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~---~~~~l~~~~~-d- 107 (346)
..+.|+|.| ++++|++-..+.|.+++ ..+.....+.... ..........+++. |+ +. +|..... .
T Consensus 3 ~P~~~a~~p----dG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~--p~f~~n~-~lYv~~t~~~ 74 (331)
T PF07995_consen 3 NPRSMAFLP----DGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFH--PDFASNG-YLYVYYTNAD 74 (331)
T ss_dssp SEEEEEEET----TSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE---TTCCCC--EEEEEEEEE-
T ss_pred CceEEEEeC----CCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceec--cccCCCC-EEEEEEEccc
Confidence 357899999 78899888755598888 4444322222221 11233455556655 63 22 3333332 1
Q ss_pred -------CeEEEEEccCc-------c-eeeeecc---CCCceEEEEEeCCCCceEEEeeCCCC---EEEEecCCCeeEEE
Q 019117 108 -------GIIRVIDVSNE-------K-LHKSFVG---HGDSINEIRTQPLKPSLVVSASKDES---VRLWNVQTGICILI 166 (346)
Q Consensus 108 -------g~i~iwd~~~~-------~-~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~d~~---i~iwd~~~~~~~~~ 166 (346)
..|.-|....+ + .+..+.. ....-..|.|.| ++.+.++.+..+. ..-.+...++.++.
T Consensus 75 ~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri 153 (331)
T PF07995_consen 75 EDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRI 153 (331)
T ss_dssp TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEE
T ss_pred CCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEe
Confidence 23444444333 1 1122222 223446799999 7777776655433 00000011222211
Q ss_pred eccc--------------------CCCCcceEEEEecCCCCcEEEEE-ecCCeEEEEEccccceeeeecee----ecCC-
Q 019117 167 FAGA--------------------GGHRNEVLSVDFHPSDIYRIASC-GMDNTVKIWSMKEFWTYVEKSFT----WTDL- 220 (346)
Q Consensus 167 ~~~~--------------------~~~~~~v~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~----~~~~- 220 (346)
-... .++.. ...++|+|..+.++++= +.++.=.|.-+..+...--.... ....
T Consensus 154 ~~dG~~p~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~ 232 (331)
T PF07995_consen 154 DPDGSIPADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPP 232 (331)
T ss_dssp ETTSSB-TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-
T ss_pred cccCcCCCCCccccCCCceEEEEEeCCCc-cccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCc
Confidence 1100 01222 34789998325554432 22332222223322110000000 0000
Q ss_pred -CCCCCCccceeceEEEeecccceEEEEec---------CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCc
Q 019117 221 -PSKFPTKYVQFPVFIASVHSNYVDCNRWL---------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC 290 (346)
Q Consensus 221 -~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 290 (346)
...........|...+..| ..+..+.|. +.++++.-..+.|....++.... .......+.....
T Consensus 233 ~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~ 306 (331)
T PF07995_consen 233 IGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGS-----VTEEEEFLGGFGG 306 (331)
T ss_dssp ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEE-----EEEEEEECTTSSS
T ss_pred cccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCC-----ccceEEccccCCC
Confidence 0001111222355555544 445555554 34566555567787777764421 0001111223344
Q ss_pred CeeEEEEeecCCcceEEEEcCCCcEE
Q 019117 291 DIWFIKFSCDFHYNAAAIGNREGKIF 316 (346)
Q Consensus 291 ~v~~~~~s~~~~~~~l~~~~~dg~i~ 316 (346)
.+..+++.||| .++++-..+|.|+
T Consensus 307 r~~~v~~~pDG--~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 307 RPRDVAQGPDG--ALYVSDDSDGKIY 330 (331)
T ss_dssp -EEEEEEETTS--EEEEEE-TTTTEE
T ss_pred CceEEEEcCCC--eEEEEECCCCeEe
Confidence 78999999999 5666666788764
No 431
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=2.2 Score=32.27 Aligned_cols=103 Identities=12% Similarity=0.026 Sum_probs=59.2
Q ss_pred CccEEEEEcCCc---EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeee
Q 019117 48 YFNVFATVGGNR---VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF 124 (346)
Q Consensus 48 ~~~~la~~~~~~---v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 124 (346)
++.++.+.+.-+ |++||+.+++.+....--.....++.++.+ |..+-.-.-.+|.-..+|.++.+.+..+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~-------gd~~y~LTw~egvaf~~d~~t~~~lg~~ 127 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL-------GDYFYQLTWKEGVAFKYDADTLEELGRF 127 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec-------cceEEEEEeccceeEEEChHHhhhhccc
Confidence 467777776544 999999988876544321111122222211 2213333445788889999888877766
Q ss_pred ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC
Q 019117 125 VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG 161 (346)
Q Consensus 125 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 161 (346)
. ..+.-..++- ++..|+.++...++..-|.++.
T Consensus 128 ~-y~GeGWgLt~---d~~~LimsdGsatL~frdP~tf 160 (262)
T COG3823 128 S-YEGEGWGLTS---DDKNLIMSDGSATLQFRDPKTF 160 (262)
T ss_pred c-cCCcceeeec---CCcceEeeCCceEEEecCHHHh
Confidence 5 3444456654 3344555554556766666543
No 432
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=93.59 E-value=6.6 Score=37.03 Aligned_cols=75 Identities=9% Similarity=-0.025 Sum_probs=49.2
Q ss_pred ccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCC----ccccccccc-----cC-CCcCeeEEEEeecCCcceEE
Q 019117 240 SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE----GTADILQKY-----PV-PECDIWFIKFSCDFHYNAAA 307 (346)
Q Consensus 240 ~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~-----~~-~~~~v~~~~~s~~~~~~~l~ 307 (346)
.+.|.++... +.+++..-.||+|.++|-.+.+..... .....+..+ .. ....+..++|||.+ ..++
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~--c~~v 336 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTM--CSLV 336 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECccc--ceEE
Confidence 3557777765 778999999999999999888644333 111111111 10 11245568999998 5788
Q ss_pred EEcCCCcEE
Q 019117 308 IGNREGKIF 316 (346)
Q Consensus 308 ~~~~dg~i~ 316 (346)
.-..+|.+.
T Consensus 337 ~~~~~~~~~ 345 (753)
T PF11635_consen 337 QIDEDGKTK 345 (753)
T ss_pred EEecCCCce
Confidence 888888855
No 433
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.53 E-value=4.6 Score=35.09 Aligned_cols=143 Identities=12% Similarity=0.108 Sum_probs=83.6
Q ss_pred CCceE-EEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCC------CcEEEEEecCCeEEEEEccccceeee
Q 019117 140 KPSLV-VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD------IYRIASCGMDNTVKIWSMKEFWTYVE 212 (346)
Q Consensus 140 ~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~s~~~d~~i~iwd~~~~~~~~~ 212 (346)
+.+++ ..|+....++-.|++.|+.+..+. -|... -+.|.|.. ...-+.|-.+..|.-.|.+....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~---~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN--- 549 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWD---LKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN--- 549 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEee---cCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCC---
Confidence 44444 455666678888899999998887 34433 46666621 12233454555665556655110
Q ss_pred eceeecCCCCCCCCccceeceEEEeecccceEEEEec------CCEEEEEeecCeEEEEcCCCCCCCCCCcccccccccc
Q 019117 213 KSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP 286 (346)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 286 (346)
.+ ......+.++--.|+ ..++++++..|-|++||--..+ ....++
T Consensus 550 -------------------Ki-~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r---------AKtalP 600 (776)
T COG5167 550 -------------------KI-KVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR---------AKTALP 600 (776)
T ss_pred -------------------ce-eeeeehhccccccccccccccCceEEEecCCCceeeehhhcch---------hhhcCc
Confidence 00 111112222222222 6799999999999999965433 223344
Q ss_pred CCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117 287 VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (346)
Q Consensus 287 ~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~ 322 (346)
+-...|..+..+.+|. ++++.+. ..+.+-|+.-
T Consensus 601 ~lG~aIk~idvta~Gk--~ilaTCk-~yllL~d~~i 633 (776)
T COG5167 601 GLGDAIKHIDVTANGK--HILATCK-NYLLLTDVPI 633 (776)
T ss_pred ccccceeeeEeecCCc--EEEEeec-ceEEEEeccc
Confidence 5566888999999994 4444433 4677777653
No 434
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.22 E-value=3.8 Score=33.13 Aligned_cols=217 Identities=12% Similarity=0.065 Sum_probs=115.1
Q ss_pred EEcCCCCcEEEEeecCCeEEEEEcc------Cc-ceeeeecc-----CCCceEEEEEeCCCC------------ceEEEe
Q 019117 92 ACNVDGIPFLVAGGINGIIRVIDVS------NE-KLHKSFVG-----HGDSINEIRTQPLKP------------SLVVSA 147 (346)
Q Consensus 92 ~~~~~~~~~l~~~~~dg~i~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~------------~~l~s~ 147 (346)
+++|.+. +-++....+...+||.. .. .++-++.. .....+.+.|+. .. ..++.+
T Consensus 29 a~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~Fif~ 106 (336)
T TIGR03118 29 SYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSRFLFV 106 (336)
T ss_pred EecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCcccceeEEEE
Confidence 3448786 77777778899999986 12 23334442 234678888875 22 236778
Q ss_pred eCCCCEEEEecCCCee-----EEEecccCCCCcce-EEEEecCC-CCcEEEE-EecCCeEEEEEccccceeeeeceeecC
Q 019117 148 SKDESVRLWNVQTGIC-----ILIFAGAGGHRNEV-LSVDFHPS-DIYRIAS-CGMDNTVKIWSMKEFWTYVEKSFTWTD 219 (346)
Q Consensus 148 ~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~v-~~~~~~~~-~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~ 219 (346)
++||+|.-|...-+.. ...+.. ...+.| ..+++... .+.+|+. --..++|.+||-.-.+..+...+....
T Consensus 107 tEdGTisaW~p~v~~t~~~~~~~~~d~--s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 107 TEDGTLSGWAPALGTTRMTRAEIVVDA--SQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred eCCceEEeecCcCCcccccccEEEEcc--CCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 9999999998643222 122221 122334 45555531 2344444 455789999986653322222222211
Q ss_pred CCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCcccccccccc--CCCcCeeEE
Q 019117 220 LPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP--VPECDIWFI 295 (346)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~ 295 (346)
.+..+ ...-+..+.. .-.|+-..-+ .+.=+.+..-|.|-+||+... .++++. +.-...+.|
T Consensus 185 iPagy----APFnIqnig~-~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~----------l~~r~as~g~LNaPWG~ 249 (336)
T TIGR03118 185 LPAGY----APFNVQNLGG-TLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ----------LLRRVASSGRLNAPWGL 249 (336)
T ss_pred CCCCC----CCcceEEECC-eEEEEEEecCCcccccccCCCcceEEEEcCCCc----------EEEEeccCCcccCCcee
Confidence 12111 1111111110 0001111111 222334444578999998754 344442 233456778
Q ss_pred EEeecCC----cceEEEEcCCCcEEEEEcCCCCcce
Q 019117 296 KFSCDFH----YNAAAIGNREGKIFVWELQSSPPVL 327 (346)
Q Consensus 296 ~~s~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~ 327 (346)
+..|-.- +.+|+.--.||+|..||..+++.+-
T Consensus 250 a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g 285 (336)
T TIGR03118 250 AIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLG 285 (336)
T ss_pred eeChhhhCCCCCCeEEeecCCceeEEecCCCCceee
Confidence 8766321 1567766679999999998887443
No 435
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.13 E-value=0.024 Score=51.40 Aligned_cols=95 Identities=19% Similarity=0.263 Sum_probs=59.8
Q ss_pred CCeEEEEEccC--ccee-----eeeccCCCceEEEEEeCC--CCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcce
Q 019117 107 NGIIRVIDVSN--EKLH-----KSFVGHGDSINEIRTQPL--KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV 177 (346)
Q Consensus 107 dg~i~iwd~~~--~~~~-----~~~~~~~~~v~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 177 (346)
-|.+.|||++- |+.. .........+.-|.|.|- +.-++..+-.++.+++..+..... ..++ +|...+
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~r---sHs~~~ 227 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFR---SHSQRV 227 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHH---hcCCCc
Confidence 46788998753 3322 222223344556666552 445677777888998887764432 3344 566666
Q ss_pred EEEE-----------ecCCCCcEEEEEecCCeEEEEEccc
Q 019117 178 LSVD-----------FHPSDIYRIASCGMDNTVKIWSMKE 206 (346)
Q Consensus 178 ~~~~-----------~~~~~~~~l~s~~~d~~i~iwd~~~ 206 (346)
..++ ++| +|..++.+..||.+++|.+.-
T Consensus 228 ~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 228 TDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred ccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeeeee
Confidence 5544 567 888888888888888887654
No 436
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.13 E-value=1.1 Score=34.69 Aligned_cols=65 Identities=12% Similarity=0.203 Sum_probs=47.2
Q ss_pred CCceEEEeeCCCCEEEEecCCCeeEEEecc----cC-------CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117 140 KPSLVVSASKDESVRLWNVQTGICILIFAG----AG-------GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (346)
Q Consensus 140 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~-------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 206 (346)
.++++++-..+|.+++||+.+++.+..-.. .. .....|..+.++. +|.-+++-+ +|....|+..-
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCCEEEecccc
Confidence 567888999999999999998876543310 11 2456788888886 777676654 57888888776
No 437
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.07 E-value=1.4 Score=42.49 Aligned_cols=158 Identities=7% Similarity=0.039 Sum_probs=84.5
Q ss_pred ecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCC-------ceEEEeeCCCCEEEEecCCCeeE---------EEec
Q 019117 105 GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKP-------SLVVSASKDESVRLWNVQTGICI---------LIFA 168 (346)
Q Consensus 105 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~l~s~~~d~~i~iwd~~~~~~~---------~~~~ 168 (346)
+.|+.+.+|+.+++.....+.+-...|..|..-.-.. ++++..+.--.|.++-+...+.. ..+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 4578999999999877777776666666655422121 23333333345666544321111 1111
Q ss_pred ccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEcccc--ceeeeeceeecCCCCCCCCccceeceEEE-eecccceEE
Q 019117 169 GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF--WTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SVHSNYVDC 245 (346)
Q Consensus 169 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 245 (346)
.....|+++.... +|+.+++| .|| .+|.+.-. .....+.+..............+ .+..+ ..+.++|..
T Consensus 176 ---~dg~~V~~I~~t~-nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvP-s~~~~~~~~~dpI~q 247 (1311)
T KOG1900|consen 176 ---VDGVSVNCITYTE-NGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVP-SLLSVPGSSKDPIRQ 247 (1311)
T ss_pred ---cCCceEEEEEecc-CCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhh-hhhcCCCCCCCccee
Confidence 2356788888664 77766655 566 45554321 00000000000000000000000 02222 367788999
Q ss_pred EEec--CCEEEEEeecCeEEEEcCCCC
Q 019117 246 NRWL--GDFILSKSVDNEIVLWEPKMK 270 (346)
Q Consensus 246 ~~~~--~~~l~~~~~d~~i~iwd~~~~ 270 (346)
+..+ -+.+.+-+..++|.+||+...
T Consensus 248 i~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 248 ITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred eEeccccceeeeeccCceEEEEEccCC
Confidence 9988 568888899999999999874
No 438
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.78 E-value=0.49 Score=39.98 Aligned_cols=165 Identities=10% Similarity=0.062 Sum_probs=95.1
Q ss_pred cccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCcee-eeEeeeecCCCccceE-EEEEEEcCCCCcEEEEeec
Q 019117 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVI-AALQSYVDEDKEESFY-TVSWACNVDGIPFLVAGGI 106 (346)
Q Consensus 29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~-~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~l~~~~~ 106 (346)
+..-.+.|..+-..| +|+.|..-+...+.++++.+.... +.+...........|. .+... ..|. .+..++.
T Consensus 216 L~~~~~~v~qllL~P----dg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL--~Gg~-SLLv~~~ 288 (733)
T COG4590 216 LSVPFSDVSQLLLTP----DGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLL--SGGF-SLLVVHE 288 (733)
T ss_pred cCCCccchHhhEECC----CCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHH--hCce-eEEEEcC
Confidence 444456677777888 788888887777888887764421 1111110000011111 11111 3344 7888888
Q ss_pred CCeEEEE-EccCc-c----eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117 107 NGIIRVI-DVSNE-K----LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180 (346)
Q Consensus 107 dg~i~iw-d~~~~-~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 180 (346)
||.|.-| |...+ . .++.++-...++..+.-.. +.+-+++-+..|++.++.....+.+..-. .-..+.-+
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~----~~~~~~~~ 363 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFER----AYQAPQLV 363 (733)
T ss_pred CCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhh----hhcCccee
Confidence 9988887 44322 1 2222222223343333222 45567888888999888765444433222 33466778
Q ss_pred EecCCCCcEEEEEecCCeEEEEEcccc
Q 019117 181 DFHPSDIYRIASCGMDNTVKIWSMKEF 207 (346)
Q Consensus 181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~ 207 (346)
+++| ++.++++-. .|.|+++.+.+.
T Consensus 364 ~~Sp-~~~~Ll~e~-~gki~~~~l~Nr 388 (733)
T COG4590 364 AMSP-NQAYLLSED-QGKIRLAQLENR 388 (733)
T ss_pred eeCc-ccchheeec-CCceEEEEecCC
Confidence 9999 777777643 578999998873
No 439
>PRK10115 protease 2; Provisional
Probab=92.67 E-value=8.7 Score=35.84 Aligned_cols=110 Identities=12% Similarity=0.085 Sum_probs=59.0
Q ss_pred ceEEEEEEeecCCCccEEEEEcCC-c-----EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC-
Q 019117 35 PLYAVVFNFIDSRYFNVFATVGGN-R-----VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN- 107 (346)
Q Consensus 35 ~v~~~~~~p~~~~~~~~la~~~~~-~-----v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d- 107 (346)
.+..+.++| ++++||.+.+. + +++.|+.++..+.... .... ..++|. +|++.++++...+
T Consensus 128 ~l~~~~~Sp----dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i------~~~~-~~~~w~--~D~~~~~y~~~~~~ 194 (686)
T PRK10115 128 TLGGMAITP----DNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL------DNVE-PSFVWA--NDSWTFYYVRKHPV 194 (686)
T ss_pred EEeEEEECC----CCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc------cCcc-eEEEEe--eCCCEEEEEEecCC
Confidence 356677887 77877776543 2 7888887665322111 1111 336676 7777344544322
Q ss_pred ----CeEEEEEccCc--ceeeeeccCCCceE-EEEEeCCCCceEEEee---CCCCEEEEec
Q 019117 108 ----GIIRVIDVSNE--KLHKSFVGHGDSIN-EIRTQPLKPSLVVSAS---KDESVRLWNV 158 (346)
Q Consensus 108 ----g~i~iwd~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~---~d~~i~iwd~ 158 (346)
..|..+++.++ +....+........ .+..+. ++.+++..+ .++.+.+++.
T Consensus 195 ~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 195 TLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTT-SKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcC-CCCEEEEEEECCccccEEEEEC
Confidence 36778888877 33334443333333 223333 455444333 3457888884
No 440
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.63 E-value=4.4 Score=32.37 Aligned_cols=101 Identities=12% Similarity=0.101 Sum_probs=62.7
Q ss_pred CCCCcEEEEeecCCe-EEEEEccCcceeeeeccCCCc--eEEEEEeCCCCceEEEeeCC-----CCEEEEecCCC-eeEE
Q 019117 95 VDGIPFLVAGGINGI-IRVIDVSNEKLHKSFVGHGDS--INEIRTQPLKPSLVVSASKD-----ESVRLWNVQTG-ICIL 165 (346)
Q Consensus 95 ~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~-~~~~ 165 (346)
|.-..-++.+-.-|+ ..++|.+..+...++...++. ---=.|+| ++.+|...-.| |.|-|||.+.+ +.+.
T Consensus 77 p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~fqrvg 155 (366)
T COG3490 77 PALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREGFQRVG 155 (366)
T ss_pred CCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecccccceec
Confidence 444334555544443 557888877766555432221 11224889 88888876544 78999998743 3445
Q ss_pred EecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEE
Q 019117 166 IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW 202 (346)
Q Consensus 166 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iw 202 (346)
++. .|.-....+.+.+ +++.++.+. |-|..-
T Consensus 156 E~~---t~GiGpHev~lm~-DGrtlvvan--GGIeth 186 (366)
T COG3490 156 EFS---THGIGPHEVTLMA-DGRTLVVAN--GGIETH 186 (366)
T ss_pred ccc---cCCcCcceeEEec-CCcEEEEeC--Cceecc
Confidence 555 6777778899998 888887764 445444
No 441
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.52 E-value=3.8 Score=31.30 Aligned_cols=151 Identities=15% Similarity=0.159 Sum_probs=84.1
Q ss_pred EEEEeecCCeEEEEEccC--cceeeeeccCCCceEEEEEeCCCCceEEEeeCCC------CEEEE-ecCC----CeeEE-
Q 019117 100 FLVAGGINGIIRVIDVSN--EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE------SVRLW-NVQT----GICIL- 165 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~------~i~iw-d~~~----~~~~~- 165 (346)
.|..+...+.|.+|++.+ .+....+.. -+.|..+.++. .+++++|--.+. .+++| |++. .+++.
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 454445578899999883 345566663 47899999999 889999864432 45554 2221 11111
Q ss_pred Eecc-c-----------------CCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCc
Q 019117 166 IFAG-A-----------------GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK 227 (346)
Q Consensus 166 ~~~~-~-----------------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 227 (346)
.+.. . -.-...+.+++..|..|++++.+ ++++.+|.+....... ..+ .
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~~~~-~~~-----------~ 173 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQTIQS-EKF-----------S 173 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEEEec-ccc-----------c
Confidence 1110 0 01345678888888677765543 4689999887622110 000 0
Q ss_pred cceeceEEEeecccc-eEEEEecCCEEEEEeecCeEEEEcC
Q 019117 228 YVQFPVFIASVHSNY-VDCNRWLGDFILSKSVDNEIVLWEP 267 (346)
Q Consensus 228 ~~~~~~~~~~~~~~~-i~~~~~~~~~l~~~~~d~~i~iwd~ 267 (346)
........+..|.+. ...+++.++++|..+.. .++++.+
T Consensus 174 ~lDFe~~l~~~~~~~~p~~v~ic~~yiA~~s~~-ev~Vlkl 213 (215)
T PF14761_consen 174 FLDFERSLIDHIDNFKPTQVAICEGYIAVMSDL-EVLVLKL 213 (215)
T ss_pred EEechhhhhheecCceEEEEEEEeeEEEEecCC-EEEEEEE
Confidence 001111111222222 45677778888887654 4666544
No 442
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.48 E-value=4.9 Score=35.08 Aligned_cols=28 Identities=21% Similarity=0.170 Sum_probs=20.7
Q ss_pred cceEEEEecCCCCcEEEEEecCCeEEEEE
Q 019117 175 NEVLSVDFHPSDIYRIASCGMDNTVKIWS 203 (346)
Q Consensus 175 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 203 (346)
-.|..+..++ .|..++-.|.+|.+.++=
T Consensus 104 feV~~vl~s~-~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 104 FEVYQVLLSP-TGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEEecC-CCceEEEecCCeeEEEEc
Confidence 3466777887 788888888888776654
No 443
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.40 E-value=9.4 Score=35.62 Aligned_cols=77 Identities=17% Similarity=0.231 Sum_probs=51.5
Q ss_pred CceEEEEEeCCCCceEEEeeCCCCEEEEecCC----------Cee---EEEecc-----cCCCCcceEEEEecCCC--Cc
Q 019117 129 DSINEIRTQPLKPSLVVSASKDESVRLWNVQT----------GIC---ILIFAG-----AGGHRNEVLSVDFHPSD--IY 188 (346)
Q Consensus 129 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----------~~~---~~~~~~-----~~~~~~~v~~~~~~~~~--~~ 188 (346)
-.|..|.++| ++.+++..|..| |.|-.+.. ++. .+.+.. ...+...|..+.|+|.+ +.
T Consensus 85 f~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 4688999999 888888777654 55555531 111 111110 01345688999999942 57
Q ss_pred EEEEEecCCeEEEEEcccc
Q 019117 189 RIASCGMDNTVKIWSMKEF 207 (346)
Q Consensus 189 ~l~s~~~d~~i~iwd~~~~ 207 (346)
.|+.-..|+++++||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 7888889999999999763
No 444
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.21 E-value=4.9 Score=34.41 Aligned_cols=122 Identities=10% Similarity=0.022 Sum_probs=72.7
Q ss_pred CCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CC
Q 019117 173 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GD 251 (346)
Q Consensus 173 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 251 (346)
..++|.++.|++ +.+.++.--.+.+|.+++....+.. .....+....+..|....|. ..
T Consensus 65 d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~-------------------l~~~~~ck~k~~~IlGF~W~~s~ 124 (657)
T KOG2377|consen 65 DKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQ-------------------LEYTQECKTKNANILGFCWTSST 124 (657)
T ss_pred CCCceeEEEecc-CcceEEEEecCceEEEEecCCCchh-------------------hHHHHHhccCcceeEEEEEecCe
Confidence 567999999999 8899999999999999988441110 01111222334457777777 43
Q ss_pred EEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117 252 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (346)
Q Consensus 252 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (346)
-++.... ..+-+|.....+. .++..+.+...|.=-.|+++..--+|+++-..+.+.=+.+.++
T Consensus 125 e~A~i~~-~G~e~y~v~pekr--------slRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 125 EIAFITD-QGIEFYQVLPEKR--------SLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred eEEEEec-CCeEEEEEchhhh--------hhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 4444433 3467777665442 3444555666777778888874222333324444444555444
No 445
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.21 E-value=0.92 Score=24.02 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=22.9
Q ss_pred CCCCcEEEEeecCCeEEEEEccCcceeeeecc
Q 019117 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG 126 (346)
Q Consensus 95 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 126 (346)
|+++.++++...++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 45663444455688999999988887777764
No 446
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=91.88 E-value=4.9 Score=32.51 Aligned_cols=97 Identities=9% Similarity=0.128 Sum_probs=60.6
Q ss_pred CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEee------CCCCEEEEecCCCeeEEEecc-c-CCCCcceEE
Q 019117 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS------KDESVRLWNVQTGICILIFAG-A-GGHRNEVLS 179 (346)
Q Consensus 108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~-~-~~~~~~v~~ 179 (346)
..|++||..+.+-...-.+-.+.|+++.|.. +.++++.|. ....+..||+.+.. ...+.. . ..-.++|..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEE
Confidence 4699999887665444444668899999986 667777764 45678889987654 333331 0 123578888
Q ss_pred EEecCCCCc-EEEEEe-cC--CeEEEEEccc
Q 019117 180 VDFHPSDIY-RIASCG-MD--NTVKIWSMKE 206 (346)
Q Consensus 180 ~~~~~~~~~-~l~s~~-~d--~~i~iwd~~~ 206 (346)
+.+...+.. +.+.|. .+ ..|..||=..
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 887543443 444443 23 3466675544
No 447
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.87 E-value=6.5 Score=34.37 Aligned_cols=75 Identities=12% Similarity=0.164 Sum_probs=48.3
Q ss_pred EEEcCCCCcEEEEeecCCeEEEEEc---------cCcceeee---e--------ccCCCceEEEEEeCCC--CceEEEee
Q 019117 91 WACNVDGIPFLVAGGINGIIRVIDV---------SNEKLHKS---F--------VGHGDSINEIRTQPLK--PSLVVSAS 148 (346)
Q Consensus 91 ~~~~~~~~~~l~~~~~dg~i~iwd~---------~~~~~~~~---~--------~~~~~~v~~~~~~~~~--~~~l~s~~ 148 (346)
+..++.|. .++-.+.+|.+.++=. +.++.+-. + ....-.+..++|+|+. +..|..-+
T Consensus 109 vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~ 187 (741)
T KOG4460|consen 109 VLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLT 187 (741)
T ss_pred EEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEe
Confidence 34458898 8888888887665431 23322111 1 1112356788999954 56788888
Q ss_pred CCCCEEEEecCCCeeEEE
Q 019117 149 KDESVRLWNVQTGICILI 166 (346)
Q Consensus 149 ~d~~i~iwd~~~~~~~~~ 166 (346)
.|..+++||+.....+..
T Consensus 188 sdnviRiy~lS~~telyl 205 (741)
T KOG4460|consen 188 SDNVIRIYSLSEPTELYL 205 (741)
T ss_pred cCcEEEEEecCCcchhhc
Confidence 899999999986655533
No 448
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.76 E-value=3.3 Score=28.92 Aligned_cols=86 Identities=8% Similarity=0.157 Sum_probs=54.9
Q ss_pred EEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEee---cCCcceEEEEcCCCcEEEEEcCCCCccee
Q 019117 252 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC---DFHYNAAAIGNREGKIFVWELQSSPPVLI 328 (346)
Q Consensus 252 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 328 (346)
.|++++.-|.|.|.+.......... ....+..+.. ...|++++-.+ +.....|+.|+.. .|..||+....-+..
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~-~~~~i~~LNi-n~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~~N~d~Fy 88 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGR-QDSDISFLNI-NQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVENNSDLFY 88 (136)
T ss_pred eEEEEecCCEEEEECCCcccccccc-ccCceeEEEC-CCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcccCchhhh
Confidence 6888888999999998765422111 1112222222 34677775544 4444678888764 688999999887777
Q ss_pred eeeeeeEEEEEe
Q 019117 329 ARLICFSLHVKY 340 (346)
Q Consensus 329 ~~~~~~~~~~~~ 340 (346)
..++..++++.+
T Consensus 89 ke~~DGvn~i~~ 100 (136)
T PF14781_consen 89 KEVPDGVNAIVI 100 (136)
T ss_pred hhCccceeEEEE
Confidence 777766666655
No 449
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=91.42 E-value=13 Score=35.26 Aligned_cols=63 Identities=13% Similarity=0.154 Sum_probs=45.6
Q ss_pred cCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 249 LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 249 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
+|+++|. -...|++|+..+.+ .++.-..+..++..+...-.+ ..+++|..-+++.+-.....+
T Consensus 839 ngkllA~--In~~vrLye~t~~~---------eLr~e~~~~~~~~aL~l~v~g--deI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 839 NGKLLAG--INQSVRLYEWTTER---------ELRIECNISNPIIALDLQVKG--DEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred CCeEEEe--cCcEEEEEEccccc---------eehhhhcccCCeEEEEEEecC--cEEEEeeccceEEEEEEeccC
Confidence 3555554 45589999998875 455555566788888888888 689999888888776655544
No 450
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.36 E-value=12 Score=34.86 Aligned_cols=81 Identities=17% Similarity=0.176 Sum_probs=52.2
Q ss_pred CceEEEEEEeecCCCccEEEEEcCCcEEEEEecc----------CceeeeEeee------ecCCCccceEEEEEEEcC-C
Q 019117 34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLE----------GGVIAALQSY------VDEDKEESFYTVSWACNV-D 96 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~----------~~~~~~~~~~------~~~~~~~~v~~~~~~~~~-~ 96 (346)
-.|..|.+|| +|.+||..|..+|.|..+-. +......+.+ ........|..+.|.+.. +
T Consensus 85 f~v~~i~~n~----~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 85 FEVHQISLNP----TGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES 160 (717)
T ss_pred eeEEEEEECC----CCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence 3588899998 88999999999977766532 1111111111 111234466667776332 2
Q ss_pred CCcEEEEeecCCeEEEEEccCcc
Q 019117 97 GIPFLVAGGINGIIRVIDVSNEK 119 (346)
Q Consensus 97 ~~~~l~~~~~dg~i~iwd~~~~~ 119 (346)
+. .|+.-..|+++++||+...+
T Consensus 161 ~~-~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 161 DS-HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CC-eEEEEecCCEEEEEecCCCC
Confidence 45 88888899999999997543
No 451
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.32 E-value=6.8 Score=36.82 Aligned_cols=109 Identities=10% Similarity=0.007 Sum_probs=68.9
Q ss_pred EEEEeecCCeEEEEEccCcceeeeeccCCCc--------eEEEEEeC---------------CCCceEEEeeCCCCEEEE
Q 019117 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDS--------INEIRTQP---------------LKPSLVVSASKDESVRLW 156 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--------v~~~~~~~---------------~~~~~l~s~~~d~~i~iw 156 (346)
.|+.++.++.|.-.|..+|+.+..+...... ...+.+.. .....++.++.|+.|.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 6777788899999999999988777532211 12233321 023477888889999999
Q ss_pred ecCCCeeEEEecccCCCCcceE-------------EEEecC-CCCcEEEEEec----------CCeEEEEEccccceeee
Q 019117 157 NVQTGICILIFAGAGGHRNEVL-------------SVDFHP-SDIYRIASCGM----------DNTVKIWSMKEFWTYVE 212 (346)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~ 212 (346)
|.++|+.+..+. ..+.|. .+.-.| -.+..++.|+. +|.|+-+|.++++..-.
T Consensus 276 DA~TGk~~W~fg----~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 276 DADTGKLCEDFG----NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred ECCCCCEEEEec----CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 999999998774 222210 111111 01234555542 68899999999766444
No 452
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=91.00 E-value=6.9 Score=31.23 Aligned_cols=165 Identities=12% Similarity=0.017 Sum_probs=84.3
Q ss_pred ceEEEEEeCCCCceEEEee-CCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEE-cccc
Q 019117 130 SINEIRTQPLKPSLVVSAS-KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS-MKEF 207 (346)
Q Consensus 130 ~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~ 207 (346)
.+.+.++++ ++..++... .++.-.+|-...+....... ....+..-.|++ ++...+....+...+++. ....
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~----~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVL----TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeec----cCCccccccccC-CCCEEEEEcCCCceEEEEecCCC
Confidence 688999999 666555444 23333444444444343332 223677788998 666666655555666653 2221
Q ss_pred ceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe---ecCeEEEEcCCCCCCCCCCcccccc
Q 019117 208 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS---VDNEIVLWEPKMKEQSPGEGTADIL 282 (346)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~ 282 (346)
... ...+... .-...|+.+.++ |..++... .++.|.+=-+..............+
T Consensus 99 ~~~-------------------~~~v~~~-~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~ 158 (253)
T PF10647_consen 99 TGE-------------------PVEVDWP-GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPR 158 (253)
T ss_pred cce-------------------eEEeccc-ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccce
Confidence 100 0001111 111178889888 66665554 3577777655433221000011122
Q ss_pred ccccCCCcCeeEEEEeecCCcceEEEEc-CCCcEEE-EEcCC
Q 019117 283 QKYPVPECDIWFIKFSCDFHYNAAAIGN-REGKIFV-WELQS 322 (346)
Q Consensus 283 ~~~~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~i-wd~~~ 322 (346)
.........+..++|.+++ .+++.+. .++.+.. .....
T Consensus 159 ~~~~~~~~~v~~v~W~~~~--~L~V~~~~~~~~~~~~v~~dG 198 (253)
T PF10647_consen 159 RVAPPLLSDVTDVAWSDDS--TLVVLGRSAGGPVVRLVSVDG 198 (253)
T ss_pred EecccccCcceeeeecCCC--EEEEEeCCCCCceeEEEEccC
Confidence 2222234588999999998 4555444 3443433 44433
No 453
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.87 E-value=3 Score=36.19 Aligned_cols=58 Identities=22% Similarity=0.383 Sum_probs=45.8
Q ss_pred EEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecC
Q 019117 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 159 (346)
++|+++..|-|++||--.-+....+++-...|..+.... ++.++++.+. .++.+-|++
T Consensus 575 yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta-~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 575 YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTA-NGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeec-CCcEEEEeec-ceEEEEecc
Confidence 899999999999999655555566788888999999998 6666665554 577787775
No 454
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=90.77 E-value=7.5 Score=31.30 Aligned_cols=153 Identities=10% Similarity=0.101 Sum_probs=90.3
Q ss_pred CCceEEEEEEeecCCCccEEEEEc-CCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 019117 33 KRPLYAVVFNFIDSRYFNVFATVG-GNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (346)
Q Consensus 33 ~~~v~~~~~~p~~~~~~~~la~~~-~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 111 (346)
.+-+.++.++. ++...+. +.+++|+|+.+......+..+... -+...|. -.|+ +...+..+.-+.
T Consensus 86 ~~l~~Dv~vse------~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~-----gyaygv~--vsGn-~aYVadlddgfL 151 (370)
T COG5276 86 RDLFADVRVSE------EYVYVADWSSGLRIVDISTPDSPTLIGFLNTD-----GYAYGVY--VSGN-YAYVADLDDGFL 151 (370)
T ss_pred hhhhheeEecc------cEEEEEcCCCceEEEeccCCCCcceeccccCC-----ceEEEEE--ecCC-EEEEeeccCcEE
Confidence 44566788874 4444444 445999999876655544433211 1223344 4477 888888666677
Q ss_pred EEEccCcc---eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCc
Q 019117 112 VIDVSNEK---LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY 188 (346)
Q Consensus 112 iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 188 (346)
+.|+.+.+ ....+......-..++.+ +++-..+..|+-+.+-|+.+...-..+... .....+.++..++ +..
T Consensus 152 ivdvsdpssP~lagrya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~-n~g~g~~sv~vsd-nr~ 226 (370)
T COG5276 152 IVDVSDPSSPQLAGRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLIGSY-NTGPGTYSVSVSD-NRA 226 (370)
T ss_pred EEECCCCCCceeeeeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEEEEE-ecCCceEEEEecC-Cee
Confidence 88887654 334444445555677775 466677778899999999755322222110 1334778888876 555
Q ss_pred EEEEEecCCeEEEEEccc
Q 019117 189 RIASCGMDNTVKIWSMKE 206 (346)
Q Consensus 189 ~l~s~~~d~~i~iwd~~~ 206 (346)
+++..+ --+.+-|...
T Consensus 227 y~vvy~--egvlivd~s~ 242 (370)
T COG5276 227 YLVVYD--EGVLIVDVSG 242 (370)
T ss_pred EEEEcc--cceEEEecCC
Confidence 444433 2355555554
No 455
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.68 E-value=13 Score=34.06 Aligned_cols=191 Identities=14% Similarity=0.148 Sum_probs=92.3
Q ss_pred CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecc-cCCCCcceEEEEecCCC
Q 019117 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG-AGGHRNEVLSVDFHPSD 186 (346)
Q Consensus 108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~ 186 (346)
-.|+|++. +|+.+..+.-..+.+-.+.|+. ...|+....+|++.+|++. |+.+..... .......|..+.+.. +
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~-~ 138 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFH-N 138 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccC--CceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEec-C
Confidence 45888885 4666655543344788999986 4567777899999999986 444433211 012233455455543 5
Q ss_pred CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEc
Q 019117 187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE 266 (346)
Q Consensus 187 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd 266 (346)
|-.+++.+ +..+.+-+.................+ .........|.. ...++-....--..++.
T Consensus 139 GVavlt~~-g~v~~i~~~~~~~~~~~~diP~~~~~--------~~~Wt~~~~~~~--------~~~ll~v~~~v~~~~~q 201 (829)
T KOG2280|consen 139 GVAVLTVS-GQVILINGVEEPKLRKMPDIPYNELP--------KSCWTVFQPHRQ--------STILLDVDVAVGLHICQ 201 (829)
T ss_pred ceEEEecC-CcEEEEcCCCcchhhhCCCCCCccCC--------CcceeEecCCCc--------ceeEEeechhhhhcccc
Confidence 54444443 22333333333111000000000000 000111111111 11111111000011222
Q ss_pred CCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee
Q 019117 267 PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR 330 (346)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (346)
..... .....+......+..+..||+. ++|+--..+|.|.+-+....+....+.
T Consensus 202 ~~~~~--------~q~~~~~~~~~~~~ki~VS~n~--~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 202 VEESR--------VQLHALSWPNSSVVKISVSPNR--RFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred eeccc--------ccccccCCCCceEEEEEEcCCc--ceEEEEecCCcEEEEecchhhhhhccC
Confidence 22211 1223333334578888999988 688888889999888877665544444
No 456
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.57 E-value=1.9 Score=38.96 Aligned_cols=69 Identities=19% Similarity=0.387 Sum_probs=42.2
Q ss_pred EEEEeecCCeEEEEEccC----cceee-----------eecc-----------CCCceEEEEEeC---CCCceEEEeeCC
Q 019117 100 FLVAGGINGIIRVIDVSN----EKLHK-----------SFVG-----------HGDSINEIRTQP---LKPSLVVSASKD 150 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~----~~~~~-----------~~~~-----------~~~~v~~~~~~~---~~~~~l~s~~~d 150 (346)
.++.+..||.+....... +.... .+.+ ....+..+++++ .+..++++.+.|
T Consensus 160 ~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~D 239 (547)
T PF11715_consen 160 NLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSRD 239 (547)
T ss_dssp BEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEETT
T ss_pred EEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeCC
Confidence 677788899888877654 11110 0000 122344455543 256789999999
Q ss_pred CCEEEEecCCCeeEEEec
Q 019117 151 ESVRLWNVQTGICILIFA 168 (346)
Q Consensus 151 ~~i~iwd~~~~~~~~~~~ 168 (346)
+++++||+.+++++....
T Consensus 240 ~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 240 HTLRIWSLETGQCLATID 257 (547)
T ss_dssp SEEEEEETTTTCEEEEEE
T ss_pred CeEEEEECCCCeEEEEec
Confidence 999999999999977654
No 457
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.12 E-value=18 Score=33.28 Aligned_cols=50 Identities=16% Similarity=0.312 Sum_probs=37.7
Q ss_pred CCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117 151 ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (346)
Q Consensus 151 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 206 (346)
-.|+|++.. |+.+..+. ...+.+-.+.|+ +...|++...+|++++|++-.
T Consensus 64 ~~I~If~~s-G~lL~~~~---w~~~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRIL---WKHGELIGMGWS--DDEELICVQKDGTVHVYGLLG 113 (829)
T ss_pred eeEEEEecc-ccchHHHH---hcCCCeeeeccc--CCceEEEEeccceEEEeecch
Confidence 468888874 77776665 234478899998 445577778999999999876
No 458
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.45 E-value=18 Score=35.67 Aligned_cols=166 Identities=17% Similarity=0.199 Sum_probs=89.1
Q ss_pred eEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEe--------cCCCCcEEEEEecCCeEEEE
Q 019117 131 INEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF--------HPSDIYRIASCGMDNTVKIW 202 (346)
Q Consensus 131 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~l~s~~~d~~i~iw 202 (346)
-..+-+-|.=+..-+| -|..+.+|+.+++.....+. +....|..+.. -| .-++++.-+.--.|.++
T Consensus 81 ~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d---~~shtIl~V~LvkPkpgvFv~-~IqhlLvvaT~~ei~il 154 (1311)
T KOG1900|consen 81 KTDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYD---GLSHTILKVGLVKPKPGVFVP-EIQHLLVVATPVEIVIL 154 (1311)
T ss_pred eeeeccchhhcceEEE--eCCeEEEEEcCCCCcccccc---chhhhheeeeeecCCCCcchh-hhheeEEecccceEEEE
Confidence 3444455523333333 36789999999987777777 45556655543 22 22233333334456665
Q ss_pred EccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCC-------
Q 019117 203 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQS------- 273 (346)
Q Consensus 203 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~------- 273 (346)
-+.-........ . -....++....-.|.|+... |+.+.+| .|| .+|.+.-....
T Consensus 155 gV~~~~~~~~~~--------~------f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc 217 (1311)
T KOG1900|consen 155 GVSFDEFTGELS--------I------FNTSFKISVDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRC 217 (1311)
T ss_pred EEEeccccCccc--------c------cccceeeecCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhccc
Confidence 544311111000 0 00113444456667888854 5555554 555 44443211100
Q ss_pred ----CCC-----cccccccccc-CCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117 274 ----PGE-----GTADILQKYP-VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (346)
Q Consensus 274 ----~~~-----~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~ 322 (346)
... -.+. +-.+. .+..+|..+...... .++.+-++.|.|.+||+..
T Consensus 218 ~Kiclt~s~ls~lvPs-~~~~~~~~~dpI~qi~ID~SR--~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 218 RKICLTKSVLSSLVPS-LLSVPGSSKDPIRQITIDNSR--NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccccCchhHHHHhhhh-hhcCCCCCCCcceeeEecccc--ceeeeeccCceEEEEEccC
Confidence 000 0011 12222 456688888887766 7999999999999999987
No 459
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=87.81 E-value=14 Score=30.23 Aligned_cols=189 Identities=8% Similarity=-0.029 Sum_probs=0.0
Q ss_pred CEEEEecCCCeeEEEecccC---CCCcceEEEEecCCCC-----cEEEEEecCCeEEEEEccccceeeeeceeecCCCCC
Q 019117 152 SVRLWNVQTGICILIFAGAG---GHRNEVLSVDFHPSDI-----YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK 223 (346)
Q Consensus 152 ~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~-----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 223 (346)
.|.+||+.+++.++.+.... ...+.+..+.+...++ ...++=...+-|.++|+.+.+............+..
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Q ss_pred CCCccceeceEEEeecccceEEEEec-----CCEEE----EEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeE
Q 019117 224 FPTKYVQFPVFIASVHSNYVDCNRWL-----GDFIL----SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWF 294 (346)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~l~----~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 294 (346)
......+.......+ +..++.+ ++.|. ++..--.|..=.++.............+..+-........
T Consensus 115 ~~~~i~g~~~~~~dg----~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g 190 (287)
T PF03022_consen 115 GPFTIGGESFQWPDG----IFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDG 190 (287)
T ss_dssp EEEEETTEEEEETTS----EEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECE
T ss_pred cceeccCceEecCCC----ccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCce
Q ss_pred EEEeecCCcceEEEEcCCCcEEEEEcCC----CCcceeeeeee---eEEEEEecC--CCCC
Q 019117 295 IKFSCDFHYNAAAIGNREGKIFVWELQS----SPPVLIARLIC---FSLHVKYNP--QSVY 346 (346)
Q Consensus 295 ~~~s~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~---~~~~~~~sp--dg~~ 346 (346)
++++++| .++.+--..+.|..|+..+ ........-+. .+..+.+.+ +|.+
T Consensus 191 ~~~D~~G--~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L 249 (287)
T PF03022_consen 191 MAIDPNG--NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYL 249 (287)
T ss_dssp EEEETTT--EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-E
T ss_pred EEECCCC--cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceE
No 460
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=87.58 E-value=14 Score=29.94 Aligned_cols=140 Identities=11% Similarity=0.038 Sum_probs=87.3
Q ss_pred EEEEeecCCeEEEEEccCcceee---eeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee---EEEecccCCC
Q 019117 100 FLVAGGINGIIRVIDVSNEKLHK---SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC---ILIFAGAGGH 173 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~ 173 (346)
+...+..+.-++|.|+.+...-. .+. ..+.-.++.. .+++...+..|.-+.+.|+.+.+. ...+. ..
T Consensus 98 yvyvad~ssGL~IvDIS~P~sP~~~~~ln-t~gyaygv~v---sGn~aYVadlddgfLivdvsdpssP~lagrya---~~ 170 (370)
T COG5276 98 YVYVADWSSGLRIVDISTPDSPTLIGFLN-TDGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYA---LP 170 (370)
T ss_pred EEEEEcCCCceEEEeccCCCCcceecccc-CCceEEEEEe---cCCEEEEeeccCcEEEEECCCCCCceeeeeec---cC
Confidence 77788888889999998765322 222 2244455555 567888877666677888875533 22332 23
Q ss_pred CcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc-ceEEEEecCCE
Q 019117 174 RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN-YVDCNRWLGDF 252 (346)
Q Consensus 174 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~ 252 (346)
...-..++.+ +++...+..|+-+.+-|+.+.. .|...-....+ .+.++..++++
T Consensus 171 ~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~----------------------sPvli~~~n~g~g~~sv~vsdnr 225 (370)
T COG5276 171 GGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPH----------------------SPVLIGSYNTGPGTYSVSVSDNR 225 (370)
T ss_pred CCCceeEEEe---cCeEEEEEeCCCeEEEEccCCC----------------------CCeEEEEEecCCceEEEEecCCe
Confidence 3333556664 4566667788899999998832 23333333333 67777777776
Q ss_pred EEEEeecCeEEEEcCCCCC
Q 019117 253 ILSKSVDNEIVLWEPKMKE 271 (346)
Q Consensus 253 l~~~~~d~~i~iwd~~~~~ 271 (346)
....-.+.-+.+-|..+.+
T Consensus 226 ~y~vvy~egvlivd~s~~s 244 (370)
T COG5276 226 AYLVVYDEGVLIVDVSGPS 244 (370)
T ss_pred eEEEEcccceEEEecCCCC
Confidence 6666566667777776655
No 461
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=87.49 E-value=7.6 Score=28.84 Aligned_cols=34 Identities=15% Similarity=0.253 Sum_probs=27.1
Q ss_pred CCcceEEEEecCC-----CCcEEEEEecCCeEEEEEccc
Q 019117 173 HRNEVLSVDFHPS-----DIYRIASCGMDNTVKIWSMKE 206 (346)
Q Consensus 173 ~~~~v~~~~~~~~-----~~~~l~s~~~d~~i~iwd~~~ 206 (346)
....+..++|+|. .+.+|++.+.++.|.+|....
T Consensus 84 s~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 84 SSSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 3458999999982 356888889999999997764
No 462
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=87.37 E-value=5 Score=36.30 Aligned_cols=27 Identities=11% Similarity=0.162 Sum_probs=23.4
Q ss_pred CcEEEEeecCCeEEEEEccCcceeeee
Q 019117 98 IPFLVAGGINGIIRVIDVSNEKLHKSF 124 (346)
Q Consensus 98 ~~~l~~~~~dg~i~iwd~~~~~~~~~~ 124 (346)
..+|++.+.|+++|+||+.+++++.+.
T Consensus 230 ~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 230 DTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp TTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 339999999999999999999986554
No 463
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.21 E-value=2.4 Score=22.04 Aligned_cols=29 Identities=21% Similarity=0.052 Sum_probs=17.5
Q ss_pred CcCeeEEEEeecCCcceEEEEcCC--CcEEEE
Q 019117 289 ECDIWFIKFSCDFHYNAAAIGNRE--GKIFVW 318 (346)
Q Consensus 289 ~~~v~~~~~s~~~~~~~l~~~~~d--g~i~iw 318 (346)
...-....|||||+ .++.+...+ |.-.||
T Consensus 8 ~~~~~~p~~SpDGk-~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGK-YIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSS-EEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCC-EEEEEecCCCCCCcCEE
Confidence 34556778999995 344455555 666665
No 464
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=86.79 E-value=1.8 Score=21.35 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=21.4
Q ss_pred ceEEEeeCCCCEEEEecCCCeeEEEe
Q 019117 142 SLVVSASKDESVRLWNVQTGICILIF 167 (346)
Q Consensus 142 ~~l~s~~~d~~i~iwd~~~~~~~~~~ 167 (346)
..++.++.+|.+..+|.++|+.+..+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 46777888999999999999887654
No 465
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=86.08 E-value=22 Score=30.93 Aligned_cols=29 Identities=10% Similarity=0.111 Sum_probs=22.2
Q ss_pred cceEEEEec--CCEEEEEeecCeEEEEcCCC
Q 019117 241 NYVDCNRWL--GDFILSKSVDNEIVLWEPKM 269 (346)
Q Consensus 241 ~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~ 269 (346)
..|..+... .+.+++...++.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 348888887 67999999999999999975
No 466
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=85.59 E-value=36 Score=32.90 Aligned_cols=178 Identities=12% Similarity=0.088 Sum_probs=96.4
Q ss_pred eEEEEEccCcceeeeeccC----CCceEEEEEeCCCCc-eEEEeeC-----------CCCEEEEecC-CCeeEEEecccC
Q 019117 109 IIRVIDVSNEKLHKSFVGH----GDSINEIRTQPLKPS-LVVSASK-----------DESVRLWNVQ-TGICILIFAGAG 171 (346)
Q Consensus 109 ~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~-~l~s~~~-----------d~~i~iwd~~-~~~~~~~~~~~~ 171 (346)
.|++.|..+++.+..+.-. .-.+..+.|+..+.. ++++|.. +|.++.|++- .++.+.-+. ..
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh-~T 932 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLH-KT 932 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeee-cc
Confidence 5888888887766555422 224666777663333 3333321 3446666553 344333322 11
Q ss_pred CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCC
Q 019117 172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD 251 (346)
Q Consensus 172 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 251 (346)
.-.+.|.+++ |..+ ++++ +....+++||+...+... ......-+..|+.+.+.+.
T Consensus 933 ~~~~~v~Ai~--~f~~-~~La-gvG~~l~~YdlG~K~lLR---------------------k~e~k~~p~~Is~iqt~~~ 987 (1205)
T KOG1898|consen 933 EIPGPVGAIC--PFQG-RVLA-GVGRFLRLYDLGKKKLLR---------------------KCELKFIPNRISSIQTYGA 987 (1205)
T ss_pred CCCccceEEe--ccCC-EEEE-ecccEEEEeeCChHHHHh---------------------hhhhccCceEEEEEeecce
Confidence 2344555554 5234 4444 345799999998732211 1122224667888888888
Q ss_pred EEEEEeecCeEEEEcCCCCCCCCCCccccccccccCC--CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117 252 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP--ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (346)
Q Consensus 252 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (346)
.+++|..--.+.++..+.... .+..+... .-.|+++.+-.. ..+|.+..=|.+.+-.+...
T Consensus 988 RI~VgD~qeSV~~~~y~~~~n--------~l~~fadD~~pR~Vt~~~~lD~---~tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 988 RIVVGDIQESVHFVRYRREDN--------QLIVFADDPVPRHVTALELLDY---DTVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred EEEEeeccceEEEEEEecCCC--------eEEEEeCCCccceeeEEEEecC---CceeeccccCcEEEEECCCc
Confidence 888887766666655544321 22222221 124555544443 35777777777777766543
No 467
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=85.42 E-value=17 Score=33.62 Aligned_cols=90 Identities=16% Similarity=0.200 Sum_probs=54.4
Q ss_pred EEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEec
Q 019117 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA 168 (346)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 168 (346)
.++..+|.|. .++.+..||.|++|++...+..+... ...+-..+.|.. .-|++...|..+.-|. ++|-..+.+.
T Consensus 18 ~aiqshp~~~-s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tn---hgl~~~tsdrr~la~~-~dgvvqqqfd 91 (1636)
T KOG3616|consen 18 TAIQSHPGGQ-SFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTN---HGLVTATSDRRALAWK-EDGVVQQQFD 91 (1636)
T ss_pred eeeeecCCCc-eEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeec---cceEEEeccchhheee-ccCcchhhcc
Confidence 4445558888 99999999999999986654422111 223334555643 3456666678888886 3454444443
Q ss_pred ccCCCCcceEEEEecC
Q 019117 169 GAGGHRNEVLSVDFHP 184 (346)
Q Consensus 169 ~~~~~~~~v~~~~~~~ 184 (346)
-.........++.+.|
T Consensus 92 yndqsekefss~~cdp 107 (1636)
T KOG3616|consen 92 YNDQSEKEFSSILCDP 107 (1636)
T ss_pred ccchhhhhccceecCc
Confidence 2222344556666666
No 468
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=84.92 E-value=25 Score=30.47 Aligned_cols=258 Identities=9% Similarity=0.010 Sum_probs=0.0
Q ss_pred ecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEE--cCCCCcEEEEeecCCeEEEEEc-----
Q 019117 44 IDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWAC--NVDGIPFLVAGGINGIIRVIDV----- 115 (346)
Q Consensus 44 ~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~l~~~~~dg~i~iwd~----- 115 (346)
..+.....+++|+..| ++||+...+..... .......-+.+|..+.... +.... ..++.-.-..+.||.+
T Consensus 32 ~~~~~~d~IivGS~~G~LrIy~P~~~~~~~~-~lllE~~l~~PILqv~~G~F~s~~~~-~~LaVLhP~kl~vY~v~~~~g 109 (418)
T PF14727_consen 32 NSPSGSDKIIVGSYSGILRIYDPSGNEFQPE-DLLLETQLKDPILQVECGKFVSGSED-LQLAVLHPRKLSVYSVSLVDG 109 (418)
T ss_pred CCCCCccEEEEeccccEEEEEccCCCCCCCc-cEEEEEecCCcEEEEEeccccCCCCc-ceEEEecCCEEEEEEEEecCC
Q ss_pred ----cCcceeeeeccC--CCceEEEEEeCCCC----ceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCC
Q 019117 116 ----SNEKLHKSFVGH--GDSINEIRTQPLKP----SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS 185 (346)
Q Consensus 116 ----~~~~~~~~~~~~--~~~v~~~~~~~~~~----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 185 (346)
.+.-.+..+..| ......+.+-|.++ .+++.=+-||.+.+++-+.--....+. ..--...+.+.+
T Consensus 110 ~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp----~~llPgPl~Y~~- 184 (418)
T PF14727_consen 110 TVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP----DFLLPGPLCYCP- 184 (418)
T ss_pred CcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC----CCCCCcCeEEee-
Q ss_pred CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEeecCeE
Q 019117 186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEI 262 (346)
Q Consensus 186 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i 262 (346)
..+.+++++.+..+.-|...........................-.+..++..-+..+.-.... ..--+..-...++
T Consensus 185 ~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~L 264 (418)
T PF14727_consen 185 RTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGERSL 264 (418)
T ss_pred cCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecceE
Q ss_pred EEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeec------CCcceEEEEcCCCcEEEEE
Q 019117 263 VLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD------FHYNAAAIGNREGKIFVWE 319 (346)
Q Consensus 263 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------~~~~~l~~~~~dg~i~iwd 319 (346)
.+.+... .+...+..+....+++.-.- +....++.++.++.+.||.
T Consensus 265 f~l~~~G-----------~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~ 316 (418)
T PF14727_consen 265 FCLKDNG-----------SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE 316 (418)
T ss_pred EEEcCCC-----------eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe
No 469
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=84.76 E-value=37 Score=32.35 Aligned_cols=77 Identities=16% Similarity=0.241 Sum_probs=49.0
Q ss_pred CCCceEEEEEe---CC---CCceEEEeeCCCCEEEEecCC---------------CeeEEEecccCCCCcceEEEEecCC
Q 019117 127 HGDSINEIRTQ---PL---KPSLVVSASKDESVRLWNVQT---------------GICILIFAGAGGHRNEVLSVDFHPS 185 (346)
Q Consensus 127 ~~~~v~~~~~~---~~---~~~~l~s~~~d~~i~iwd~~~---------------~~~~~~~~~~~~~~~~v~~~~~~~~ 185 (346)
-..+|..|+|. .. ...+|++=. ...+.|+...- ..++..+.....-..+...++|+|.
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 45678888887 21 223444433 45566666211 1334444321123346778999997
Q ss_pred CCcEEEEEecCCeEEEEEc
Q 019117 186 DIYRIASCGMDNTVKIWSM 204 (346)
Q Consensus 186 ~~~~l~s~~~d~~i~iwd~ 204 (346)
+...|+.....|...||++
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i 175 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDI 175 (765)
T ss_pred ccceEEEEeccCcEEEEEe
Confidence 7889999999999999999
No 470
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=84.29 E-value=39 Score=32.15 Aligned_cols=35 Identities=11% Similarity=-0.066 Sum_probs=27.7
Q ss_pred cCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcc
Q 019117 290 CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV 326 (346)
Q Consensus 290 ~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 326 (346)
..|.++....-+ .+++..-.||+|.++|-.+.+.+
T Consensus 260 ~~V~si~~~~~~--~~v~~~~~DGsI~~~dr~t~~~~ 294 (753)
T PF11635_consen 260 KRVVSITSPELD--IVVAFAFSDGSIEFRDRNTMKEL 294 (753)
T ss_pred CeEEEEEecccC--cEEEEEEcCCeEEEEecCcchhh
Confidence 467777776666 68899999999999998887544
No 471
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=84.21 E-value=30 Score=30.78 Aligned_cols=111 Identities=22% Similarity=0.210 Sum_probs=56.3
Q ss_pred EEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCC---ceEEEEEeCCCCceEEEee--------------CCCCE
Q 019117 91 WACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD---SINEIRTQPLKPSLVVSAS--------------KDESV 153 (346)
Q Consensus 91 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~~--------------~d~~i 153 (346)
+...++|. +++... ..+..+|+. |+.+..+..... .=.++...| ++++|+.+. .|. |
T Consensus 153 ~~~l~nG~-ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~-nGn~L~l~~~~~~~~~~~~~~~~~D~-I 226 (477)
T PF05935_consen 153 FKQLPNGN-LLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELP-NGNLLILASETKYVDEDKDVDTVEDV-I 226 (477)
T ss_dssp EEE-TTS--EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-T-TS-EEEEEEETTEE-TS-EE---S-E-E
T ss_pred eeEcCCCC-EEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECC-CCCEEEEEeecccccCCCCccEecCE-E
Confidence 33448887 554444 788899975 665554432221 135677778 778877776 233 5
Q ss_pred EEEecCCCeeEEEecccCC----------------------CC--cceEEEEecCCCCcEEEEEecCCeEEEEEccccc
Q 019117 154 RLWNVQTGICILIFAGAGG----------------------HR--NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208 (346)
Q Consensus 154 ~iwd~~~~~~~~~~~~~~~----------------------~~--~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 208 (346)
..+| .+|+.+..+....- .. --++++.+.+.++.+++|+-.-..|...|.++.+
T Consensus 227 vevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~ 304 (477)
T PF05935_consen 227 VEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGK 304 (477)
T ss_dssp EEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-
T ss_pred EEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCc
Confidence 5566 66766665432110 00 2368899988566666666555578888866643
No 472
>PLN02153 epithiospecifier protein
Probab=84.05 E-value=24 Score=29.62 Aligned_cols=23 Identities=9% Similarity=0.148 Sum_probs=15.3
Q ss_pred CCceEEEeeCC-----CCEEEEecCCCe
Q 019117 140 KPSLVVSASKD-----ESVRLWNVQTGI 162 (346)
Q Consensus 140 ~~~~l~s~~~d-----~~i~iwd~~~~~ 162 (346)
++.+++.|+.+ ..+.+||+.+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCE
Confidence 45677777753 247788887654
No 473
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=83.56 E-value=45 Score=32.32 Aligned_cols=134 Identities=13% Similarity=0.045 Sum_probs=72.2
Q ss_pred CCeEEEEEcc-Ccceeeeecc--CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEec
Q 019117 107 NGIIRVIDVS-NEKLHKSFVG--HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 183 (346)
Q Consensus 107 dg~i~iwd~~-~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 183 (346)
+|.++.|++- .++.+.-+.. -.+.| .+..| -...+++|- ...+++||+-..++++..... .....|..+.+.
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v--~Ai~~-f~~~~Lagv-G~~l~~YdlG~K~lLRk~e~k-~~p~~Is~iqt~ 985 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPV--GAICP-FQGRVLAGV-GRFLRLYDLGKKKLLRKCELK-FIPNRISSIQTY 985 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccc--eEEec-cCCEEEEec-ccEEEEeeCChHHHHhhhhhc-cCceEEEEEeec
Confidence 3556666653 3443332221 22334 44556 333444443 468999999888777665531 135677888774
Q ss_pred CCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeE
Q 019117 184 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEI 262 (346)
Q Consensus 184 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i 262 (346)
+..++.|...-.+.++..+.... +..+..-..-+..|+++.+- -+.++.+..-|.+
T Consensus 986 ---~~RI~VgD~qeSV~~~~y~~~~n--------------------~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi 1042 (1205)
T KOG1898|consen 986 ---GARIVVGDIQESVHFVRYRREDN--------------------QLIVFADDPVPRHVTALELLDYDTVAGADRFGNI 1042 (1205)
T ss_pred ---ceEEEEeeccceEEEEEEecCCC--------------------eEEEEeCCCccceeeEEEEecCCceeeccccCcE
Confidence 45677776666666655444111 11111222234456665554 5667777776766
Q ss_pred EEEcCC
Q 019117 263 VLWEPK 268 (346)
Q Consensus 263 ~iwd~~ 268 (346)
.+-.+.
T Consensus 1043 ~~vR~P 1048 (1205)
T KOG1898|consen 1043 AVVRIP 1048 (1205)
T ss_pred EEEECC
Confidence 666554
No 474
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=83.46 E-value=3.4 Score=21.45 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=23.0
Q ss_pred eEEEeeCCCCEEEEecCCCeeEEEecc
Q 019117 143 LVVSASKDESVRLWNVQTGICILIFAG 169 (346)
Q Consensus 143 ~l~s~~~d~~i~iwd~~~~~~~~~~~~ 169 (346)
.++.++.+|.|.-.|.++|+.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 455668999999999999999998873
No 475
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=83.43 E-value=28 Score=29.80 Aligned_cols=12 Identities=17% Similarity=0.113 Sum_probs=8.5
Q ss_pred CEEEEecCCCee
Q 019117 152 SVRLWNVQTGIC 163 (346)
Q Consensus 152 ~i~iwd~~~~~~ 163 (346)
.+.+||..+.+-
T Consensus 190 ~v~~YD~~t~~W 201 (376)
T PRK14131 190 EVLSYDPSTNQW 201 (376)
T ss_pred eEEEEECCCCee
Confidence 478888876654
No 476
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=83.40 E-value=23 Score=28.80 Aligned_cols=53 Identities=8% Similarity=0.093 Sum_probs=38.3
Q ss_pred CCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe------cCCeEEEEEccc
Q 019117 150 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG------MDNTVKIWSMKE 206 (346)
Q Consensus 150 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~------~d~~i~iwd~~~ 206 (346)
-..|++||..+.+-...-. +-.+.|+.|.|.. +.++++.|. ....+..||+.+
T Consensus 15 C~~lC~yd~~~~qW~~~g~---~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~ 73 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGN---GISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKN 73 (281)
T ss_pred CCEEEEEECCCCEeecCCC---CceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCC
Confidence 4569999988666544433 4678999999984 677777664 345688899887
No 477
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=82.76 E-value=4.3 Score=21.06 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=22.6
Q ss_pred EEEEeecCCeEEEEEccCcceeeeecc
Q 019117 100 FLVAGGINGIIRVIDVSNEKLHKSFVG 126 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~ 126 (346)
.++.++.+|.|.-.|.++|+.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 456668999999999999999887763
No 478
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=82.56 E-value=3.9 Score=19.44 Aligned_cols=25 Identities=0% Similarity=0.032 Sum_probs=20.8
Q ss_pred ceEEEEecCCEEEEEeecCeEEEEc
Q 019117 242 YVDCNRWLGDFILSKSVDNEIVLWE 266 (346)
Q Consensus 242 ~i~~~~~~~~~l~~~~~d~~i~iwd 266 (346)
.|.+++....+++++...+.+|+|.
T Consensus 3 ~i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeEEecC
Confidence 4677777788999999999999984
No 479
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.05 E-value=33 Score=29.74 Aligned_cols=76 Identities=7% Similarity=0.086 Sum_probs=48.3
Q ss_pred ecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcE
Q 019117 238 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI 315 (346)
Q Consensus 238 ~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i 315 (346)
...+.|.++.|+ .+.+++--.|.+|.+++....+. ......+.+.....|....|+... -+|..+..| +
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~-----~l~~~~~ck~k~~~IlGF~W~~s~---e~A~i~~~G-~ 134 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNS-----QLEYTQECKTKNANILGFCWTSST---EIAFITDQG-I 134 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCch-----hhHHHHHhccCcceeEEEEEecCe---eEEEEecCC-e
Confidence 346689999999 66888888899999999854431 111233334445568888888764 344444333 5
Q ss_pred EEEEcCC
Q 019117 316 FVWELQS 322 (346)
Q Consensus 316 ~iwd~~~ 322 (346)
.+|.+..
T Consensus 135 e~y~v~p 141 (657)
T KOG2377|consen 135 EFYQVLP 141 (657)
T ss_pred EEEEEch
Confidence 5665544
No 480
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=82.04 E-value=34 Score=29.83 Aligned_cols=31 Identities=13% Similarity=0.420 Sum_probs=24.6
Q ss_pred cceEEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117 175 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (346)
Q Consensus 175 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 206 (346)
..|..++..+ ..+.+++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~-~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDP-SRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEET-TTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecC-CcCEEEEEeCCCcEEEEEEeC
Confidence 3488999987 678999999999999999986
No 481
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=81.98 E-value=0.64 Score=21.08 Aligned_cols=8 Identities=13% Similarity=0.542 Sum_probs=6.2
Q ss_pred EecCCCCC
Q 019117 339 KYNPQSVY 346 (346)
Q Consensus 339 ~~spdg~~ 346 (346)
.|||+|++
T Consensus 7 ~FSp~Grl 14 (23)
T PF10584_consen 7 TFSPDGRL 14 (23)
T ss_dssp SBBTTSSB
T ss_pred eECCCCeE
Confidence 58898874
No 482
>PRK10115 protease 2; Provisional
Probab=81.83 E-value=46 Score=31.26 Aligned_cols=110 Identities=8% Similarity=-0.027 Sum_probs=58.9
Q ss_pred EEEEcCCCCcEEEEeec-----CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCC-----CCEEEEecC
Q 019117 90 SWACNVDGIPFLVAGGI-----NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD-----ESVRLWNVQ 159 (346)
Q Consensus 90 ~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~ 159 (346)
.+.++|+|+ +|+.+.. ...|++.|+.+++.+...-.... ..++|.+++..++++...+ ..|..+++.
T Consensus 131 ~~~~Spdg~-~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg 207 (686)
T PRK10115 131 GMAITPDNT-IMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG 207 (686)
T ss_pred EEEECCCCC-EEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC
Confidence 355679999 6665532 23688999988864332221222 4699999444444544322 357778887
Q ss_pred CC--eeEEEecccCCCCcceE-EEEecCCCCcEEEEEec---CCeEEEEEccc
Q 019117 160 TG--ICILIFAGAGGHRNEVL-SVDFHPSDIYRIASCGM---DNTVKIWSMKE 206 (346)
Q Consensus 160 ~~--~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~---d~~i~iwd~~~ 206 (346)
++ +-...+.. ...... .+..+. ++.+++..+. ++.+.+++...
T Consensus 208 t~~~~d~lv~~e---~~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 208 TPASQDELVYEE---KDDTFYVSLHKTT-SKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred CChhHCeEEEee---CCCCEEEEEEEcC-CCCEEEEEEECCccccEEEEECcC
Confidence 77 33333431 222222 233332 5554443332 35688888543
No 483
>PRK13684 Ycf48-like protein; Provisional
Probab=81.66 E-value=30 Score=29.01 Aligned_cols=155 Identities=10% Similarity=0.041 Sum_probs=77.4
Q ss_pred cceEEEEEEEcCCCCcEEEEeecCCeEEEE-EccCcceeeee-ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC
Q 019117 84 ESFYTVSWACNVDGIPFLVAGGINGIIRVI-DVSNEKLHKSF-VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG 161 (346)
Q Consensus 84 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw-d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 161 (346)
..+..+.+. +++. +++++. .|.+..- | ..++.-..+ ......++++.+.+ ++..++.+ ..|.+.+=....+
T Consensus 173 g~~~~i~~~--~~g~-~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G 245 (334)
T PRK13684 173 GVVRNLRRS--PDGK-YVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDL 245 (334)
T ss_pred ceEEEEEEC--CCCe-EEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCC
Confidence 455555554 7776 655554 5655432 2 222222222 23456789999998 66666654 4576653233444
Q ss_pred eeEEEecccC-CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc
Q 019117 162 ICILIFAGAG-GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240 (346)
Q Consensus 162 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (346)
..-....... .....+..+.+.| ++..++ ++.+|.+.. .....+. |. .......-+
T Consensus 246 ~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~-~G~~G~v~~-S~d~G~t-------W~-------------~~~~~~~~~ 302 (334)
T PRK13684 246 ESWSKPIIPEITNGYGYLDLAYRT-PGEIWA-GGGNGTLLV-SKDGGKT-------WE-------------KDPVGEEVP 302 (334)
T ss_pred CccccccCCccccccceeeEEEcC-CCCEEE-EcCCCeEEE-eCCCCCC-------Ce-------------ECCcCCCCC
Confidence 4333322110 1224578899987 666544 455675543 2222111 00 000000111
Q ss_pred cceEEEEec-CCEEEEEeecCeEEEEcCC
Q 019117 241 NYVDCNRWL-GDFILSKSVDNEIVLWEPK 268 (346)
Q Consensus 241 ~~i~~~~~~-~~~l~~~~~d~~i~iwd~~ 268 (346)
.....+.|. ++..+..+..|.|..|+-.
T Consensus 303 ~~~~~~~~~~~~~~~~~G~~G~il~~~~~ 331 (334)
T PRK13684 303 SNFYKIVFLDPEKGFVLGQRGVLLRYVGS 331 (334)
T ss_pred cceEEEEEeCCCceEEECCCceEEEecCC
Confidence 234445544 5666667788888877643
No 484
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=79.60 E-value=5.6 Score=36.40 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=46.4
Q ss_pred CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEcc
Q 019117 127 HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 205 (346)
Q Consensus 127 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 205 (346)
....++++.-+| +++.++.++.||.|.+|+.......+... ...+-..+.|.. .+ +++...|..+.-|.-.
T Consensus 13 ~~e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~qski~~----~~~p~~nlv~tn-hg--l~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 13 EDEFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRRQSKICE----EAKPKENLVFTN-HG--LVTATSDRRALAWKED 83 (1636)
T ss_pred ccceeeeeeecC-CCceEEEEecCCcEEEEeecccchhhhhh----hcCCccceeeec-cc--eEEEeccchhheeecc
Confidence 345678888899 99999999999999999986554422222 223444555653 22 5555666666666443
No 485
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=79.09 E-value=24 Score=26.22 Aligned_cols=28 Identities=14% Similarity=0.269 Sum_probs=23.3
Q ss_pred ceEEEEec--------CCEEEEEeecCeEEEEcCCC
Q 019117 242 YVDCNRWL--------GDFILSKSVDNEIVLWEPKM 269 (346)
Q Consensus 242 ~i~~~~~~--------~~~l~~~~~d~~i~iwd~~~ 269 (346)
.+..++|+ +-+|++.+.++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78899998 22788889999999998764
No 486
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=78.88 E-value=42 Score=28.98 Aligned_cols=154 Identities=12% Similarity=0.036 Sum_probs=0.0
Q ss_pred CCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117 33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (346)
Q Consensus 33 ~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 112 (346)
.+....+..++ ++.+++.+..+.+..=+-........+..- ....+..+.+. +++. +++++..-+.+.-
T Consensus 238 ~Gsf~~v~~~~----dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~----~~~~l~~v~~~--~dg~-l~l~g~~G~l~~S 306 (398)
T PLN00033 238 TGTFSTVNRSP----DGDYVAVSSRGNFYLTWEPGQPYWQPHNRA----SARRIQNMGWR--ADGG-LWLLTRGGGLYVS 306 (398)
T ss_pred ccceeeEEEcC----CCCEEEEECCccEEEecCCCCcceEEecCC----CccceeeeeEc--CCCC-EEEEeCCceEEEe
Q ss_pred EEccCcceeeeeccCCCc-----eEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117 113 IDVSNEKLHKSFVGHGDS-----INEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI 187 (346)
Q Consensus 113 wd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 187 (346)
-|-........+...... +.++.|.+ ++..+++|. +-+.+.....++.-........-....+.+.|. +.
T Consensus 307 ~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~-d~~~~a~G~--~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~--~~ 381 (398)
T PLN00033 307 KGTGLTEEDFDFEEADIKSRGFGILDVGYRS-KKEAWAAGG--SGILLRSTDGGKSWKRDKGADNIAANLYSVKFF--DD 381 (398)
T ss_pred cCCCCcccccceeecccCCCCcceEEEEEcC-CCcEEEEEC--CCcEEEeCCCCcceeEccccCCCCcceeEEEEc--CC
Q ss_pred cEEEEEecCCeEEEE
Q 019117 188 YRIASCGMDNTVKIW 202 (346)
Q Consensus 188 ~~l~s~~~d~~i~iw 202 (346)
...+..+.+|.|.-|
T Consensus 382 ~~g~~~G~~G~il~~ 396 (398)
T PLN00033 382 KKGFVLGNDGVLLRY 396 (398)
T ss_pred CceEEEeCCcEEEEe
No 487
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=78.11 E-value=40 Score=28.34 Aligned_cols=43 Identities=7% Similarity=-0.145 Sum_probs=19.7
Q ss_pred CCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecC
Q 019117 151 ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 196 (346)
Q Consensus 151 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 196 (346)
..+.+||..+.+-.. +.........-.+++.. ++++++.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~-~~~~p~~~r~~~~~~~~--~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRN-LGENPFLGTAGSAIVHK--GNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeE-CccCCCCcCCCceEEEE--CCEEEEEeeee
Confidence 457788887654322 11100001111233333 56777777653
No 488
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=78.02 E-value=43 Score=31.52 Aligned_cols=212 Identities=10% Similarity=0.038 Sum_probs=0.0
Q ss_pred cEEEEeecCCeEEEEEccCcceeeeecc----CCCceEEEEEeCCCCceEEEeeCCCCEEEEecC-----CCeeEEEecc
Q 019117 99 PFLVAGGINGIIRVIDVSNEKLHKSFVG----HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-----TGICILIFAG 169 (346)
Q Consensus 99 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-----~~~~~~~~~~ 169 (346)
+.+..|+.++.+.++.-..+........ ....+.++.+++ ..+..|.-||++-.+--. .+++-..+.
T Consensus 548 PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss---~Slgagl~dgt~a~y~rap~gSwd~ep~~~~~- 623 (925)
T KOG3522|consen 548 PTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSS---GSLGAGLIDGTLAVYGRAPSGSWDGEPNISIP- 623 (925)
T ss_pred CcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccc---cccccCccCCccccccCCCCCCCCCCCccccc-
Q ss_pred cCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec
Q 019117 170 AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL 249 (346)
Q Consensus 170 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 249 (346)
.-..+|++.++.. + ++-++.+|.|.++...+... .........|...|+++.+.
T Consensus 624 --~g~lPvrsla~~e-d---~~was~gG~V~vi~~tt~~~--------------------~~~leahqee~~~Vthm~~~ 677 (925)
T KOG3522|consen 624 --TGSLPVRSLAFQE-D---FVWASEGGCVHVIPSTTFIR--------------------SWDLEAHQEEAHSVTHMLYL 677 (925)
T ss_pred --cCCccccchhhhh-c---eeeeecCCceEEEechhccc--------------------cchhHHHHhhcceEEEEEee
Q ss_pred -CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCccee
Q 019117 250 -GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI 328 (346)
Q Consensus 250 -~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 328 (346)
.+..++-.....++.++..+......................+..-.--... .+|.+++.++....--+...+--..
T Consensus 678 ~~gVwvafasG~~~rlfhtetl~hlqd~niaT~vt~~lP~~kllsv~~rl~c~--gl~~V~~~~~l~v~~~v~~~q~~k~ 755 (925)
T KOG3522|consen 678 DNGVWVAFASGDEERLFHTETLWHLQDSNIATSVTVDLPFGKLLSVPGRLWCQ--GLLMVLTSLTLLVALPVPRLQDSKV 755 (925)
T ss_pred CCceEEEEcCCCEEEEecccccCCccccccCcceeecCCCcccccCCCccccc--ceeEEeccceeEEEeeeeeccCCce
Q ss_pred eeeeeeEEEEEecC
Q 019117 329 ARLICFSLHVKYNP 342 (346)
Q Consensus 329 ~~~~~~~~~~~~sp 342 (346)
..--.....-.|+|
T Consensus 756 ~~~~~vS~~~~~~~ 769 (925)
T KOG3522|consen 756 TGRMMVSYHAVWSP 769 (925)
T ss_pred eeeeeeeccccccc
No 489
>PLN02193 nitrile-specifier protein
Probab=77.68 E-value=51 Score=29.29 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=32.7
Q ss_pred CCceEEEeeCC-----CCEEEEecCCCeeEEEecccC-C-CCcceEEEEecCCCCcEEEEEecCC-----eEEEEEccc
Q 019117 140 KPSLVVSASKD-----ESVRLWNVQTGICILIFAGAG-G-HRNEVLSVDFHPSDIYRIASCGMDN-----TVKIWSMKE 206 (346)
Q Consensus 140 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~ 206 (346)
++.+++.|+.+ ..+.++|+.+.+-.. +.... . ....-.+++.. ++.+++.|+.++ .+..||+.+
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~-l~~~~~~P~~R~~h~~~~~--~~~iYv~GG~~~~~~~~~~~~yd~~t 303 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKL-LTPVEEGPTPRSFHSMAAD--EENVYVFGGVSATARLKTLDSYNIVD 303 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEE-cCcCCCCCCCccceEEEEE--CCEEEEECCCCCCCCcceEEEEECCC
Confidence 45677777755 357788887654332 22100 0 11111222222 566777777543 355666655
No 490
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=77.39 E-value=42 Score=28.21 Aligned_cols=55 Identities=9% Similarity=0.001 Sum_probs=26.4
Q ss_pred CCceEEEeeCC-----------CCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecC
Q 019117 140 KPSLVVSASKD-----------ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 196 (346)
Q Consensus 140 ~~~~l~s~~~d-----------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 196 (346)
++.+.+.|+.+ ..+..||..+.+-...-............++.. ++.+.+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~--~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLH--NGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEe--CCEEEEEcCcC
Confidence 56777777753 246778877654322211000011111122122 67777877764
No 491
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=76.64 E-value=3.7 Score=26.47 Aligned_cols=38 Identities=13% Similarity=0.392 Sum_probs=0.0
Q ss_pred EcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117 309 GNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 309 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~ 346 (346)
+..+|.+.-||..+++......--..++.|+.+||+.+
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~ 70 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESF 70 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSE
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCE
No 492
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=75.37 E-value=62 Score=29.11 Aligned_cols=152 Identities=11% Similarity=0.021 Sum_probs=81.2
Q ss_pred CCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 019117 32 GKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (346)
Q Consensus 32 h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 111 (346)
-..+|.++.+.. ...+-.|..+++..||..+++.++.... ...+.|..+... ..|+ |..|+.+| +.
T Consensus 163 ~d~~V~aLv~D~-----~g~lWvgT~dGL~~fd~~~gkalql~s~----~~dk~I~al~~d--~qg~--LWVGTdqG-v~ 228 (671)
T COG3292 163 KDTPVVALVFDA-----NGRLWVGTPDGLSYFDAGRGKALQLASP----PLDKAINALIAD--VQGR--LWVGTDQG-VY 228 (671)
T ss_pred cCccceeeeeec-----cCcEEEecCCcceEEccccceEEEcCCC----cchhhHHHHHHH--hcCc--EEEEeccc-eE
Confidence 346788888876 3467778899999999888776554432 122455444443 4564 88888777 67
Q ss_pred EEEccCcceeeeec-cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEE
Q 019117 112 VIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI 190 (346)
Q Consensus 112 iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 190 (346)
+.+....+...-.. -..+.|..+.-. ....+-.|++.|..+ ...................+.|.++..+. ++. +
T Consensus 229 ~~e~~G~~~sn~~~~lp~~~I~ll~qD--~qG~lWiGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~-dGs-L 303 (671)
T COG3292 229 LQEAEGWRASNWGPMLPSGNILLLVQD--AQGELWIGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLWLDT-DGS-L 303 (671)
T ss_pred EEchhhccccccCCCCcchheeeeecc--cCCCEEEeeccccee-EecCCCCccccccccCCccccccceeecc-CCC-E
Confidence 77765522221111 123344444333 344566666666443 23333322222221101234566666654 554 5
Q ss_pred EEEecCCeEEEE
Q 019117 191 ASCGMDNTVKIW 202 (346)
Q Consensus 191 ~s~~~d~~i~iw 202 (346)
-+++.++.+++-
T Consensus 304 Wv~t~~giv~~~ 315 (671)
T COG3292 304 WVGTYGGIVRYL 315 (671)
T ss_pred eeeccCceEEEe
Confidence 555656555543
No 493
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=75.35 E-value=46 Score=27.66 Aligned_cols=196 Identities=13% Similarity=0.029 Sum_probs=0.0
Q ss_pred CCCcEEEEeecCC---------------eEEEEEccC----cceeeeeccCCCceEEEEEeCCCCceEEEeeCC-----C
Q 019117 96 DGIPFLVAGGING---------------IIRVIDVSN----EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD-----E 151 (346)
Q Consensus 96 ~~~~~l~~~~~dg---------------~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~ 151 (346)
++. +++.|+.+. .+.+++... ...+..++........+.+ ++.+++.|+.+ .
T Consensus 13 ~~~-l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~---~~~lyviGG~~~~~~~~ 88 (323)
T TIGR03548 13 GDY-ILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSV---ENGIYYIGGSNSSERFS 88 (323)
T ss_pred CCE-EEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEE---CCEEEEEcCCCCCCCce
Q ss_pred CEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEec-----CCeEEEEEccccceeeeeceeecCCCCCCCC
Q 019117 152 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-----DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT 226 (346)
Q Consensus 152 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 226 (346)
.+..+|+.+.+..........-..+....+..-.++.+++.|+. ...+..||+.+.+
T Consensus 89 ~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~------------------ 150 (323)
T TIGR03548 89 SVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQE------------------ 150 (323)
T ss_pred eEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCC------------------
Q ss_pred ccceeceEEEeecccceEEEEec-CCEEEEEeec----CeEEEEcCCCCCCCCCCccccccccc---cCCCcCeeEEEEe
Q 019117 227 KYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVD----NEIVLWEPKMKEQSPGEGTADILQKY---PVPECDIWFIKFS 298 (346)
Q Consensus 227 ~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s 298 (346)
-..+..+......-.++... +++.+.|+.+ ..+.+||+.+.+ ...+... ..+........+.
T Consensus 151 ---W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~-------W~~~~~~~~~~~p~~~~~~~~~~ 220 (323)
T TIGR03548 151 ---WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ-------WQKVADPTTDSEPISLLGAASIK 220 (323)
T ss_pred ---eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe-------eEECCCCCCCCCceeccceeEEE
Q ss_pred ecCCcceEEEEcCC-------------------------------------CcEEEEEcCCCC
Q 019117 299 CDFHYNAAAIGNRE-------------------------------------GKIFVWELQSSP 324 (346)
Q Consensus 299 ~~~~~~~l~~~~~d-------------------------------------g~i~iwd~~~~~ 324 (346)
..+. .+++.|+.+ ..+.+||+.+++
T Consensus 221 ~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 282 (323)
T TIGR03548 221 INES-LLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGK 282 (323)
T ss_pred ECCC-EEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCe
No 494
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=74.53 E-value=50 Score=27.67 Aligned_cols=106 Identities=19% Similarity=0.228 Sum_probs=53.3
Q ss_pred EEEEEEEcCCCCcEEEEeecCCeEEEEEccCcce---eeee----ccCCCceEEEEEeCC---CCceEEEeeCC------
Q 019117 87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL---HKSF----VGHGDSINEIRTQPL---KPSLVVSASKD------ 150 (346)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~----~~~~~~v~~~~~~~~---~~~~l~s~~~d------ 150 (346)
+.++|. |+|+ +++ +...|.|.+++ ..+.. +..+ .........++++|. ++.+.++.+..
T Consensus 5 ~~~a~~--pdG~-l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 5 RSMAFL--PDGR-LLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp EEEEEE--TTSC-EEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred eEEEEe--CCCc-EEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 446665 9987 555 55699999999 44433 2222 223457889999992 23333333321
Q ss_pred --CCEEEEecCCC-------eeEE-EecccCCCCcceEEEEecCCCCcEEEEEecCCe
Q 019117 151 --ESVRLWNVQTG-------ICIL-IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT 198 (346)
Q Consensus 151 --~~i~iwd~~~~-------~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 198 (346)
..|.-|....+ +.+. .+.........-..|+|.| ++.++++.+..+.
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~ 136 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTT
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCC
Confidence 23444444333 1111 1111001223446699999 7777777665443
No 495
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=74.21 E-value=55 Score=27.93 Aligned_cols=100 Identities=19% Similarity=0.305 Sum_probs=51.5
Q ss_pred EEEEEcCCCCcEEEEee-----------cCC-eEEEEEccC--cc--eeeeeccCCCceEEEEEeCCCCceEEEeeCCCC
Q 019117 89 VSWACNVDGIPFLVAGG-----------ING-IIRVIDVSN--EK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKDES 152 (346)
Q Consensus 89 ~~~~~~~~~~~~l~~~~-----------~dg-~i~iwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 152 (346)
+.++++++|+ ++++-. ..+ .|.+++-.+ ++ ....+.........+++.+ ++ +++ +....
T Consensus 17 ~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~~- 91 (367)
T TIGR02604 17 IAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPPD- 91 (367)
T ss_pred ceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCCe-
Confidence 3444558888 555532 223 677776433 32 2234433344568899988 66 444 44443
Q ss_pred EEEE-ecCC-----CeeEEEecccCC----CCcceEEEEecCCCCcEEEEEe
Q 019117 153 VRLW-NVQT-----GICILIFAGAGG----HRNEVLSVDFHPSDIYRIASCG 194 (346)
Q Consensus 153 i~iw-d~~~-----~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~ 194 (346)
|..+ |... ++....+..... +......++|.| ++.+.++-+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G 142 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHG 142 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecc
Confidence 4433 4421 121112221111 234577899999 777766555
No 496
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=74.18 E-value=10 Score=19.76 Aligned_cols=23 Identities=9% Similarity=0.091 Sum_probs=17.6
Q ss_pred EecCCEEEEEeecCeEEEEcCCC
Q 019117 247 RWLGDFILSKSVDNEIVLWEPKM 269 (346)
Q Consensus 247 ~~~~~~l~~~~~d~~i~iwd~~~ 269 (346)
...+..+..++.||.+..+|.++
T Consensus 18 ~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 18 AVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp EECTSEEEEE-TTSEEEEEETT-
T ss_pred EEECCEEEEEcCCCEEEEEeCCC
Confidence 44488999999999999998763
No 497
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=73.42 E-value=57 Score=27.80 Aligned_cols=200 Identities=10% Similarity=-0.004 Sum_probs=0.0
Q ss_pred CCCcEEEEeecCCeEEEEEccCcceeeeeccCC--CceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCC
Q 019117 96 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG--DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGH 173 (346)
Q Consensus 96 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 173 (346)
+++ +..+..+|.|.-.|..+++.+.....-. ..+..-.+.. ++. ++.++.++.+..+|.++|+.+.... ..
T Consensus 68 dg~--v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~---~~ 140 (370)
T COG1520 68 DGT--VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRN---VG 140 (370)
T ss_pred CCe--EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEe---cC
Q ss_pred C-cceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---
Q 019117 174 R-NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--- 249 (346)
Q Consensus 174 ~-~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--- 249 (346)
. ..+..-..- ....++.++.++.+...|..+ .........-.. +......
T Consensus 141 ~~~~~~~~~v~--~~~~v~~~s~~g~~~al~~~t-----------------------G~~~W~~~~~~~-~~~~~~~~~~ 194 (370)
T COG1520 141 GSPYYASPPVV--GDGTVYVGTDDGHLYALNADT-----------------------GTLKWTYETPAP-LSLSIYGSPA 194 (370)
T ss_pred CCeEEecCcEE--cCcEEEEecCCCeEEEEEccC-----------------------CcEEEEEecCCc-cccccccCce
Q ss_pred --CCEEEEEee--cCeEEEEcCCCCCCCCCCccccccccccC-CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 250 --GDFILSKSV--DNEIVLWEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 250 --~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
...+..+.. ++.+.-.|..++...........+..... ....+..-...-++ -+..++.++.+...|..+++
T Consensus 195 ~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~~~~~~~~g~~~~l~~~~G~ 271 (370)
T COG1520 195 IASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDG---GVYAGSYGGKLLCLDADTGE 271 (370)
T ss_pred eecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECC---cEEEEecCCeEEEEEcCCCc
Q ss_pred cceeeee
Q 019117 325 PVLIARL 331 (346)
Q Consensus 325 ~~~~~~~ 331 (346)
.+-.+..
T Consensus 272 ~~W~~~~ 278 (370)
T COG1520 272 LIWSFPA 278 (370)
T ss_pred eEEEEec
No 498
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=72.73 E-value=91 Score=29.85 Aligned_cols=169 Identities=10% Similarity=0.014 Sum_probs=98.7
Q ss_pred cCCCceEEEEEE---eecCCCccEEEEEcCCcEEEEEeccC---------------ceeeeEeeeecCCCccceEEEEEE
Q 019117 31 EGKRPLYAVVFN---FIDSRYFNVFATVGGNRVTVYQCLEG---------------GVIAALQSYVDEDKEESFYTVSWA 92 (346)
Q Consensus 31 ~h~~~v~~~~~~---p~~~~~~~~la~~~~~~v~i~~~~~~---------------~~~~~~~~~~~~~~~~~v~~~~~~ 92 (346)
.-..+|..|+|. ..-.+...+|++=....+.|+...-. ..+..+... ..+......++
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~----~tgg~~~aDv~ 152 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSS----DTGGFPHADVA 152 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechh----hcCCCccceEE
Confidence 456789999998 31111335788877777888882211 111222211 11222224445
Q ss_pred EcCCCCcEEEEeecCCeEEEEEccCcc-----eeeeeccCCC----------ceEEEEEeCCCCceEEEeeCCCCEEEEe
Q 019117 93 CNVDGIPFLVAGGINGIIRVIDVSNEK-----LHKSFVGHGD----------SINEIRTQPLKPSLVVSASKDESVRLWN 157 (346)
Q Consensus 93 ~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~----------~v~~~~~~~~~~~~l~s~~~d~~i~iwd 157 (346)
|+|.....||+....|...||++.... .......+.+ .-..+.|.+ +.+.|+.++. ..+.++|
T Consensus 153 FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~r-~~l~~~d 230 (765)
T PF10214_consen 153 FNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCNR-SKLMLID 230 (765)
T ss_pred eccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEcC-CceEEEE
Confidence 557665589999999999999992211 1111111122 233788887 6667777765 5788999
Q ss_pred cCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEcccc
Q 019117 158 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF 207 (346)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 207 (346)
+++......+.. ......|..+.-+|.+..+++.-+. ..|...++...
T Consensus 231 ~~~~~~~~~l~~-~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~~~~~ 278 (765)
T PF10214_consen 231 FESNWQTEYLVT-AKTWSWILDVKRSPDNPSHVFILTS-KEIIWLDVKSS 278 (765)
T ss_pred CCCCCccchhcc-CCChhheeeEEecCCccceEEEEec-CeEEEEEccCC
Confidence 987765332221 1356789999988843344443332 57888888773
No 499
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=72.40 E-value=47 Score=26.35 Aligned_cols=85 Identities=11% Similarity=-0.004 Sum_probs=45.9
Q ss_pred EEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCC---CCEEEEecCC---CeeEEEecccCCCCcceEEEEec
Q 019117 110 IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD---ESVRLWNVQT---GICILIFAGAGGHRNEVLSVDFH 183 (346)
Q Consensus 110 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~ 183 (346)
-.+||+.+++....-....-.+.+-.+.+ ++.+|.+|+.. ..+++++... ..........-....+--+...-
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 45899988765332222334455556777 88899888752 3577777543 11111111000122233334445
Q ss_pred CCCCcEEEEEecC
Q 019117 184 PSDIYRIASCGMD 196 (346)
Q Consensus 184 ~~~~~~l~s~~~d 196 (346)
| +++.|+.|+..
T Consensus 127 ~-DG~vlIvGG~~ 138 (243)
T PF07250_consen 127 P-DGRVLIVGGSN 138 (243)
T ss_pred C-CCCEEEEeCcC
Confidence 5 78888888776
No 500
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=71.15 E-value=58 Score=26.89 Aligned_cols=58 Identities=9% Similarity=-0.008 Sum_probs=37.5
Q ss_pred cEEEEEcCCcEEEEEeccC--ceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEcc
Q 019117 50 NVFATVGGNRVTVYQCLEG--GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS 116 (346)
Q Consensus 50 ~~la~~~~~~v~i~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 116 (346)
++|+.|.++|+.+.+.... ...+.+ ....|..+... +..+-+++.++....++.+++.
T Consensus 14 ~~lL~GTe~Gly~~~~~~~~~~~~kl~-------~~~~v~q~~v~--~~~~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 14 KWLLVGTEEGLYVLNISDQPGTLEKLI-------GRRSVTQIWVL--EENNVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred cEEEEEeCCceEEEEcccCCCCeEEec-------CcCceEEEEEE--hhhCEEEEEeCCcceEEEEEHH
Confidence 6899999999999986542 222222 45577777776 4444144445545569999984
Done!