Query 019117
Match_columns 346
No_of_seqs 544 out of 1522
Neff 11.9
Searched_HMMs 29240
Date Mon Mar 25 11:10:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019117.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019117hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ynn_A Coatomer subunit beta'; 100.0 1.9E-48 6.7E-53 318.0 36.4 274 23-345 3-283 (304)
2 1vyh_C Platelet-activating fac 100.0 1.1E-47 3.8E-52 326.2 35.1 270 26-346 101-394 (410)
3 3ow8_A WD repeat-containing pr 100.0 4.1E-47 1.4E-51 312.1 35.2 279 23-346 22-304 (321)
4 1got_B GT-beta; complex (GTP-b 100.0 1.4E-45 4.7E-50 305.9 38.3 274 21-346 43-326 (340)
5 4gqb_B Methylosome protein 50; 100.0 1.2E-46 4.1E-51 311.6 31.5 271 30-346 27-313 (344)
6 2pbi_B Guanine nucleotide-bind 100.0 1E-44 3.4E-49 302.1 36.3 275 22-346 53-340 (354)
7 4gqb_B Methylosome protein 50; 100.0 8.9E-45 3E-49 300.3 34.2 251 30-324 79-333 (344)
8 3iz6_a 40S ribosomal protein R 100.0 8.6E-46 2.9E-50 311.8 27.6 281 21-346 54-358 (380)
9 4g56_B MGC81050 protein; prote 100.0 9.4E-46 3.2E-50 308.5 27.5 273 29-345 38-325 (357)
10 3frx_A Guanine nucleotide-bind 100.0 2.6E-44 8.9E-49 295.5 35.7 278 20-346 4-300 (319)
11 3ow8_A WD repeat-containing pr 100.0 1.3E-44 4.6E-49 297.2 32.4 249 22-321 69-320 (321)
12 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.8E-44 2.3E-48 296.3 34.8 288 21-345 3-316 (345)
13 4ery_A WD repeat-containing pr 100.0 1.5E-43 5.1E-48 290.5 35.5 276 20-346 10-293 (312)
14 1vyh_C Platelet-activating fac 100.0 4.8E-44 1.6E-48 303.9 32.8 249 23-321 140-410 (410)
15 2xzm_R RACK1; ribosome, transl 100.0 1.3E-42 4.6E-47 288.4 37.7 282 21-346 9-323 (343)
16 3k26_A Polycomb protein EED; W 100.0 1.9E-43 6.4E-48 296.3 31.4 321 22-346 6-349 (366)
17 2hes_X YDR267CP; beta-propelle 100.0 1.7E-42 5.8E-47 286.1 35.7 285 22-346 3-311 (330)
18 1erj_A Transcriptional repress 100.0 2.5E-42 8.5E-47 292.0 37.4 283 31-343 62-363 (393)
19 4g56_B MGC81050 protein; prote 100.0 7.2E-43 2.5E-47 291.1 30.6 255 26-324 87-345 (357)
20 1got_B GT-beta; complex (GTP-b 100.0 2.6E-41 8.8E-46 280.3 34.5 248 23-319 87-340 (340)
21 1nr0_A Actin interacting prote 100.0 2.5E-41 8.6E-46 301.4 36.2 282 22-345 179-594 (611)
22 2ynn_A Coatomer subunit beta'; 100.0 5.5E-41 1.9E-45 274.0 34.9 254 23-323 45-303 (304)
23 1nr0_A Actin interacting prote 100.0 1.4E-41 4.8E-46 303.0 33.9 280 23-345 49-380 (611)
24 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.5E-41 1.9E-45 278.8 33.8 273 29-327 57-340 (345)
25 1gxr_A ESG1, transducin-like e 100.0 3.4E-40 1.2E-44 273.4 37.7 269 30-346 48-320 (337)
26 3dm0_A Maltose-binding peripla 100.0 4.2E-41 1.4E-45 304.6 34.9 281 22-346 371-676 (694)
27 2pm7_B Protein transport prote 100.0 4.6E-41 1.6E-45 273.5 31.7 258 27-322 3-285 (297)
28 4aow_A Guanine nucleotide-bind 100.0 2.3E-40 7.9E-45 274.8 36.4 282 20-346 25-320 (340)
29 2hes_X YDR267CP; beta-propelle 100.0 4.1E-41 1.4E-45 277.8 31.5 262 24-322 47-328 (330)
30 3frx_A Guanine nucleotide-bind 100.0 2.4E-40 8.3E-45 271.9 33.5 269 10-323 42-318 (319)
31 2pbi_B Guanine nucleotide-bind 100.0 3.9E-40 1.3E-44 274.4 34.8 246 24-319 97-354 (354)
32 2ymu_A WD-40 repeat protein; u 100.0 3.4E-40 1.2E-44 293.0 36.3 266 24-346 294-563 (577)
33 3bg1_A Protein SEC13 homolog; 100.0 3E-41 1E-45 276.9 26.7 258 28-322 8-293 (316)
34 1sq9_A Antiviral protein SKI8; 100.0 1.7E-40 5.7E-45 281.6 31.6 271 23-344 6-366 (397)
35 1erj_A Transcriptional repress 100.0 1E-39 3.5E-44 275.9 34.2 256 35-324 125-391 (393)
36 4ery_A WD repeat-containing pr 100.0 1.4E-39 4.8E-44 266.9 32.8 249 23-321 55-311 (312)
37 2xzm_R RACK1; ribosome, transl 100.0 2.5E-39 8.7E-44 268.7 34.2 257 24-323 67-341 (343)
38 3odt_A Protein DOA1; ubiquitin 100.0 8.2E-39 2.8E-43 262.4 36.9 269 20-346 5-280 (313)
39 3iz6_a 40S ribosomal protein R 100.0 1.1E-40 3.8E-45 280.6 25.6 256 23-324 98-377 (380)
40 3ei3_B DNA damage-binding prot 100.0 2.9E-39 1E-43 272.6 33.9 285 21-346 61-366 (383)
41 3mkq_A Coatomer beta'-subunit; 100.0 2.5E-39 8.5E-44 298.5 33.9 273 23-345 3-283 (814)
42 3zwl_B Eukaryotic translation 100.0 1.8E-38 6.1E-43 266.2 35.3 274 21-346 20-329 (369)
43 2ymu_A WD-40 repeat protein; u 100.0 8E-39 2.7E-43 284.2 34.7 270 25-346 8-317 (577)
44 3i2n_A WD repeat-containing pr 100.0 1E-38 3.4E-43 266.7 32.7 279 26-346 11-335 (357)
45 1r5m_A SIR4-interacting protei 100.0 8.9E-39 3E-43 273.1 32.5 273 30-346 42-408 (425)
46 3dw8_B Serine/threonine-protei 100.0 3.4E-39 1.2E-43 277.8 28.5 250 31-326 26-377 (447)
47 2pm9_A Protein WEB1, protein t 100.0 8.3E-40 2.9E-44 278.9 24.0 252 31-326 65-341 (416)
48 3v7d_B Cell division control p 100.0 7.2E-38 2.5E-42 270.8 35.6 267 22-342 151-443 (464)
49 3jrp_A Fusion protein of prote 100.0 2.2E-38 7.6E-43 266.7 31.4 260 25-323 3-288 (379)
50 3vl1_A 26S proteasome regulato 100.0 5E-38 1.7E-42 268.4 33.4 268 29-345 94-398 (420)
51 1k8k_C P40, ARP2/3 complex 41 100.0 4.2E-38 1.4E-42 264.4 32.0 260 29-322 4-274 (372)
52 4aow_A Guanine nucleotide-bind 100.0 7.5E-38 2.6E-42 259.7 32.9 275 8-324 61-339 (340)
53 3f3f_A Nucleoporin SEH1; struc 100.0 3.1E-38 1.1E-42 262.7 30.4 270 27-327 5-342 (351)
54 4e54_B DNA damage-binding prot 100.0 5.3E-39 1.8E-43 275.3 25.7 290 22-346 108-414 (435)
55 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.9E-37 9.9E-42 265.5 36.4 263 22-345 148-420 (445)
56 1sq9_A Antiviral protein SKI8; 100.0 1E-37 3.4E-42 264.5 31.7 280 9-324 37-397 (397)
57 3gre_A Serine/threonine-protei 100.0 6.5E-38 2.2E-42 269.0 30.6 270 21-330 50-367 (437)
58 3mmy_A MRNA export factor; mRN 100.0 1.8E-37 6.3E-42 260.0 32.5 282 18-346 24-329 (368)
59 2j04_B YDR362CP, TAU91; beta p 100.0 1.1E-38 3.6E-43 276.7 25.0 270 32-345 132-456 (524)
60 2pm9_A Protein WEB1, protein t 100.0 6.4E-39 2.2E-43 273.5 23.3 269 33-344 12-317 (416)
61 3v7d_B Cell division control p 100.0 6.5E-37 2.2E-41 264.8 34.5 265 25-346 113-405 (464)
62 3dm0_A Maltose-binding peripla 100.0 2.6E-37 9E-42 279.8 32.6 271 9-322 406-693 (694)
63 4aez_A CDC20, WD repeat-contai 100.0 3.5E-37 1.2E-41 261.4 31.1 263 30-346 88-363 (401)
64 3k26_A Polycomb protein EED; W 100.0 1E-37 3.5E-42 261.4 27.6 264 31-322 67-366 (366)
65 1gxr_A ESG1, transducin-like e 100.0 2.7E-36 9.3E-41 249.9 35.2 240 30-321 94-336 (337)
66 2pm7_B Protein transport prote 100.0 3.3E-37 1.1E-41 250.7 28.6 233 81-346 7-268 (297)
67 4h5i_A Guanine nucleotide-exch 100.0 1.7E-36 5.9E-41 253.3 33.0 197 91-323 139-344 (365)
68 4aez_A CDC20, WD repeat-contai 100.0 1.2E-36 4E-41 258.1 32.4 246 31-327 132-385 (401)
69 3i2n_A WD repeat-containing pr 100.0 3.5E-37 1.2E-41 257.3 28.5 263 30-324 62-355 (357)
70 3sfz_A APAF-1, apoptotic pepti 100.0 1E-36 3.6E-41 292.7 35.6 270 26-322 608-913 (1249)
71 1yfq_A Cell cycle arrest prote 100.0 9.6E-37 3.3E-41 253.3 30.8 275 26-346 4-306 (342)
72 3dwl_C Actin-related protein 2 100.0 2.5E-38 8.5E-43 266.4 21.4 261 29-321 7-280 (377)
73 2aq5_A Coronin-1A; WD40 repeat 100.0 5.3E-37 1.8E-41 260.4 29.5 267 35-346 36-327 (402)
74 3vl1_A 26S proteasome regulato 100.0 1.5E-36 5E-41 259.3 31.6 260 23-322 129-419 (420)
75 4a11_B DNA excision repair pro 100.0 2.9E-36 9.8E-41 256.3 33.2 286 24-328 34-371 (408)
76 2j04_B YDR362CP, TAU91; beta p 100.0 2.2E-37 7.5E-42 268.4 26.6 266 26-323 200-518 (524)
77 1k8k_C P40, ARP2/3 complex 41 100.0 2.5E-36 8.5E-41 253.6 31.0 264 22-324 41-363 (372)
78 4e54_B DNA damage-binding prot 100.0 9.8E-38 3.4E-42 267.4 22.6 274 24-326 155-434 (435)
79 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.9E-36 6.4E-41 260.7 30.2 274 34-344 5-366 (450)
80 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.5E-35 5E-40 254.9 35.6 259 23-342 108-372 (445)
81 4gga_A P55CDC, cell division c 100.0 2.2E-35 7.7E-40 251.7 36.0 249 27-328 141-401 (420)
82 1p22_A F-BOX/WD-repeat protein 100.0 4E-36 1.4E-40 257.6 31.4 253 30-340 130-393 (435)
83 4gga_A P55CDC, cell division c 100.0 1.8E-35 6.1E-40 252.3 34.6 262 36-346 108-378 (420)
84 1p22_A F-BOX/WD-repeat protein 100.0 2.3E-36 8E-41 259.0 29.3 269 22-342 162-434 (435)
85 2xyi_A Probable histone-bindin 100.0 3.3E-36 1.1E-40 257.5 29.9 260 28-323 123-411 (430)
86 3odt_A Protein DOA1; ubiquitin 100.0 1.8E-35 6.3E-40 242.4 33.1 258 23-334 49-308 (313)
87 3zwl_B Eukaryotic translation 100.0 1.8E-35 6E-40 248.0 33.4 250 23-325 64-349 (369)
88 3sfz_A APAF-1, apoptotic pepti 100.0 6.4E-36 2.2E-40 287.2 34.3 286 23-345 647-1057(1249)
89 3ei3_B DNA damage-binding prot 100.0 8.1E-36 2.8E-40 251.6 30.6 259 28-322 113-382 (383)
90 3gre_A Serine/threonine-protei 100.0 6.2E-36 2.1E-40 256.7 30.1 281 31-319 109-437 (437)
91 3jro_A Fusion protein of prote 100.0 2.1E-36 7.1E-41 275.4 27.6 259 26-323 2-286 (753)
92 3bg1_A Protein SEC13 homolog; 100.0 7.4E-37 2.5E-41 250.8 21.8 234 81-346 11-276 (316)
93 3dwl_C Actin-related protein 2 100.0 1.8E-36 6.2E-41 255.0 24.7 263 23-320 45-377 (377)
94 4ggc_A P55CDC, cell division c 100.0 1.1E-34 3.8E-39 238.4 32.6 261 36-325 28-318 (318)
95 3mkq_A Coatomer beta'-subunit; 100.0 6.4E-35 2.2E-39 269.1 34.5 255 23-324 45-304 (814)
96 1pgu_A Actin interacting prote 100.0 6.4E-35 2.2E-39 261.0 32.2 258 30-341 15-307 (615)
97 1r5m_A SIR4-interacting protei 100.0 3.4E-35 1.2E-39 250.9 28.5 260 23-321 139-424 (425)
98 2aq5_A Coronin-1A; WD40 repeat 100.0 4.9E-35 1.7E-39 248.3 27.7 255 24-325 72-345 (402)
99 2j04_A TAU60, YPL007P, hypothe 100.0 2.4E-35 8.3E-40 250.2 24.8 267 30-345 12-343 (588)
100 3jrp_A Fusion protein of prote 100.0 9.2E-35 3.2E-39 244.6 28.1 229 82-346 10-270 (379)
101 3vu4_A KMHSV2; beta-propeller 100.0 1.1E-34 3.7E-39 241.7 27.8 254 25-324 11-273 (355)
102 4gq1_A NUP37; propeller, trans 100.0 8.6E-35 3E-39 245.6 25.3 305 34-346 16-373 (393)
103 1pgu_A Actin interacting prote 100.0 9.1E-34 3.1E-38 253.5 32.0 267 24-343 54-349 (615)
104 3lrv_A PRE-mRNA-splicing facto 100.0 4.2E-34 1.4E-38 237.4 24.6 244 48-342 47-309 (343)
105 2xyi_A Probable histone-bindin 100.0 1.7E-33 5.9E-38 240.7 29.1 231 81-345 126-391 (430)
106 4gq1_A NUP37; propeller, trans 100.0 3.8E-34 1.3E-38 241.7 24.4 258 48-322 100-389 (393)
107 2oaj_A Protein SNI1; WD40 repe 100.0 4E-33 1.4E-37 257.4 32.7 265 30-320 14-310 (902)
108 2w18_A PALB2, fancn, partner a 100.0 8.4E-33 2.9E-37 220.8 29.2 267 20-320 22-355 (356)
109 3dw8_B Serine/threonine-protei 100.0 6.3E-33 2.2E-37 238.7 27.0 262 21-321 69-445 (447)
110 4a11_B DNA excision repair pro 100.0 8.2E-33 2.8E-37 235.0 26.0 229 60-325 25-279 (408)
111 3f3f_A Nucleoporin SEH1; struc 100.0 2.6E-32 8.9E-37 226.8 27.5 219 81-323 9-250 (351)
112 3bws_A Protein LP49; two-domai 100.0 5E-32 1.7E-36 232.1 29.9 274 23-346 113-414 (433)
113 2oaj_A Protein SNI1; WD40 repe 100.0 8.6E-33 3E-37 255.1 26.5 260 29-333 431-794 (902)
114 3mmy_A MRNA export factor; mRN 100.0 5.1E-32 1.7E-36 226.9 28.2 253 24-324 77-348 (368)
115 3jro_A Fusion protein of prote 100.0 9.5E-33 3.3E-37 251.4 25.1 230 81-346 7-268 (753)
116 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.2E-31 7.4E-36 229.1 31.5 270 30-323 99-392 (450)
117 1yfq_A Cell cycle arrest prote 100.0 1.8E-31 6.1E-36 221.5 29.2 246 26-320 49-322 (342)
118 1l0q_A Surface layer protein; 100.0 6.7E-30 2.3E-34 216.0 35.3 254 23-332 22-285 (391)
119 1l0q_A Surface layer protein; 100.0 4.5E-30 1.5E-34 217.1 32.1 246 50-346 3-257 (391)
120 3lrv_A PRE-mRNA-splicing facto 100.0 2.2E-31 7.6E-36 221.0 19.8 210 93-346 44-274 (343)
121 4h5i_A Guanine nucleotide-exch 100.0 1.8E-30 6.1E-35 216.9 24.9 197 32-270 132-344 (365)
122 3bws_A Protein LP49; two-domai 100.0 6.8E-29 2.3E-33 212.7 31.3 240 28-322 164-432 (433)
123 4ggc_A P55CDC, cell division c 100.0 5.8E-29 2E-33 204.2 29.5 226 87-346 29-298 (318)
124 2w18_A PALB2, fancn, partner a 100.0 3.2E-29 1.1E-33 200.2 25.0 215 20-267 73-355 (356)
125 3vu4_A KMHSV2; beta-propeller 100.0 3.1E-28 1.1E-32 202.7 31.7 241 35-326 60-340 (355)
126 2j04_A TAU60, YPL007P, hypothe 100.0 1.9E-29 6.4E-34 214.3 24.2 235 31-311 83-350 (588)
127 1nir_A Nitrite reductase; hemo 100.0 4.4E-27 1.5E-31 205.5 30.0 279 22-346 168-492 (543)
128 2hqs_A Protein TOLB; TOLB, PAL 100.0 3.6E-27 1.2E-31 200.2 28.6 267 27-346 111-411 (415)
129 3vgz_A Uncharacterized protein 100.0 6.5E-26 2.2E-30 188.8 31.6 263 32-346 39-327 (353)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.5E-25 5.2E-30 190.2 24.8 260 34-346 63-367 (415)
131 2ojh_A Uncharacterized protein 99.9 6.7E-25 2.3E-29 177.9 23.3 242 56-346 19-285 (297)
132 1nir_A Nitrite reductase; hemo 99.9 5.4E-24 1.9E-28 186.0 29.7 259 40-346 144-434 (543)
133 2oit_A Nucleoporin 214KDA; NH2 99.9 3.6E-24 1.2E-28 182.4 25.8 261 32-321 35-332 (434)
134 3u4y_A Uncharacterized protein 99.9 2.1E-23 7.2E-28 172.1 29.1 256 49-346 10-286 (331)
135 1ri6_A Putative isomerase YBHE 99.9 2.8E-23 9.7E-28 172.0 26.0 260 50-346 6-290 (343)
136 1ri6_A Putative isomerase YBHE 99.9 1.1E-22 3.9E-27 168.4 28.7 274 31-344 35-334 (343)
137 2ecf_A Dipeptidyl peptidase IV 99.9 1.4E-23 4.7E-28 191.7 24.6 262 35-346 110-438 (741)
138 2z3z_A Dipeptidyl aminopeptida 99.9 1.6E-23 5.5E-28 190.2 24.2 263 34-346 82-414 (706)
139 3u4y_A Uncharacterized protein 99.9 3E-22 1E-26 165.2 28.1 283 24-344 31-326 (331)
140 2ecf_A Dipeptidyl peptidase IV 99.9 2.4E-23 8.4E-28 190.1 23.6 267 33-345 36-392 (741)
141 2ojh_A Uncharacterized protein 99.9 4.2E-23 1.4E-27 167.3 21.3 236 28-312 36-292 (297)
142 1pby_B Quinohemoprotein amine 99.9 6.3E-23 2.1E-27 169.5 22.4 245 50-346 2-293 (337)
143 1k32_A Tricorn protease; prote 99.9 8.4E-23 2.9E-27 192.7 24.9 261 27-346 197-485 (1045)
144 2oit_A Nucleoporin 214KDA; NH2 99.9 2.6E-23 8.8E-28 177.1 19.1 199 85-323 38-279 (434)
145 1k32_A Tricorn protease; prote 99.9 2.6E-22 8.9E-27 189.4 27.2 266 32-346 294-621 (1045)
146 1xfd_A DIP, dipeptidyl aminope 99.9 2.4E-23 8.1E-28 189.7 17.7 262 35-346 18-373 (723)
147 3hfq_A Uncharacterized protein 99.9 9E-21 3.1E-25 157.4 31.8 258 31-327 37-324 (347)
148 1pby_B Quinohemoprotein amine 99.9 7.8E-22 2.7E-26 163.0 23.6 246 35-332 35-320 (337)
149 3o4h_A Acylamino-acid-releasin 99.9 3.3E-22 1.1E-26 177.5 21.8 251 32-345 20-294 (582)
150 1xfd_A DIP, dipeptidyl aminope 99.9 7.3E-22 2.5E-26 179.9 24.3 276 26-346 50-423 (723)
151 1jmx_B Amine dehydrogenase; ox 99.9 1E-21 3.4E-26 163.2 22.6 261 39-332 5-335 (349)
152 3vgz_A Uncharacterized protein 99.9 1.9E-20 6.4E-25 155.8 24.8 222 84-345 41-284 (353)
153 3hfq_A Uncharacterized protein 99.9 1E-19 3.4E-24 151.1 28.5 252 59-346 17-299 (347)
154 3scy_A Hypothetical bacterial 99.9 3.8E-19 1.3E-23 148.4 31.6 269 32-341 48-360 (361)
155 2z3z_A Dipeptidyl aminopeptida 99.9 3.4E-20 1.2E-24 168.4 24.5 252 29-324 116-437 (706)
156 3pe7_A Oligogalacturonate lyas 99.9 2.5E-20 8.4E-25 157.2 21.2 272 25-346 22-364 (388)
157 1z68_A Fibroblast activation p 99.9 1E-20 3.5E-25 172.1 18.3 267 38-344 20-367 (719)
158 1jmx_B Amine dehydrogenase; ox 99.9 2E-19 6.9E-24 149.2 23.5 221 93-346 7-308 (349)
159 3scy_A Hypothetical bacterial 99.9 2.9E-18 1E-22 143.1 29.7 257 59-346 28-319 (361)
160 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.4E-18 8.4E-23 143.7 28.2 255 32-323 38-342 (365)
161 2oiz_A Aromatic amine dehydrog 99.8 1.3E-18 4.4E-23 144.7 25.1 285 23-345 41-360 (361)
162 3o4h_A Acylamino-acid-releasin 99.8 1.3E-19 4.6E-24 160.8 19.5 215 83-345 21-258 (582)
163 1z68_A Fibroblast activation p 99.8 2.7E-19 9.3E-24 162.8 17.5 264 35-346 61-423 (719)
164 1q7f_A NHL, brain tumor CG1071 99.8 7.2E-17 2.5E-21 130.1 29.7 248 30-326 26-284 (286)
165 4a5s_A Dipeptidyl peptidase 4 99.8 4.4E-18 1.5E-22 155.1 24.9 275 34-327 17-358 (740)
166 3fvz_A Peptidyl-glycine alpha- 99.8 6.9E-17 2.4E-21 132.8 29.0 246 32-323 22-323 (329)
167 3c5m_A Oligogalacturonate lyas 99.8 6.9E-19 2.4E-23 148.6 16.1 256 36-346 38-364 (396)
168 1jof_A Carboxy-CIS,CIS-muconat 99.8 9.6E-18 3.3E-22 140.0 22.5 255 59-346 15-323 (365)
169 3azo_A Aminopeptidase; POP fam 99.8 1.8E-17 6E-22 149.5 25.7 250 27-324 17-327 (662)
170 2dg1_A DRP35, lactonase; beta 99.8 1.8E-16 6.1E-21 130.7 23.4 265 34-345 6-292 (333)
171 3dsm_A Uncharacterized protein 99.8 6.1E-15 2.1E-19 121.0 31.5 253 34-341 44-320 (328)
172 3azo_A Aminopeptidase; POP fam 99.7 3.4E-16 1.2E-20 141.1 23.6 260 27-326 61-373 (662)
173 3pe7_A Oligogalacturonate lyas 99.7 1.9E-16 6.6E-21 133.3 20.5 213 92-346 42-303 (388)
174 3fvz_A Peptidyl-glycine alpha- 99.7 1.9E-15 6.6E-20 124.2 25.2 223 84-345 24-304 (329)
175 1q7f_A NHL, brain tumor CG1071 99.7 5.6E-15 1.9E-19 119.0 27.3 217 84-345 30-263 (286)
176 3e5z_A Putative gluconolactona 99.7 1.5E-14 5.2E-19 117.1 28.2 242 28-325 22-289 (296)
177 2bkl_A Prolyl endopeptidase; m 99.7 4.6E-16 1.6E-20 140.8 21.3 246 30-326 117-401 (695)
178 4a5s_A Dipeptidyl peptidase 4 99.7 1.3E-16 4.4E-21 145.4 17.7 224 87-345 20-331 (740)
179 2dg1_A DRP35, lactonase; beta 99.7 3.8E-14 1.3E-18 116.7 30.3 242 26-312 37-300 (333)
180 2xdw_A Prolyl endopeptidase; a 99.7 4.2E-15 1.4E-19 134.9 26.7 244 31-324 122-416 (710)
181 2gop_A Trilobed protease; beta 99.7 7E-15 2.4E-19 121.8 25.9 219 60-342 45-311 (347)
182 2oiz_A Aromatic amine dehydrog 99.7 2.8E-15 9.4E-20 124.7 23.1 253 59-346 32-318 (361)
183 1rwi_B Serine/threonine-protei 99.7 5.3E-15 1.8E-19 118.0 23.3 239 35-325 25-267 (270)
184 2z2n_A Virginiamycin B lyase; 99.7 5E-13 1.7E-17 108.1 33.2 262 29-345 10-278 (299)
185 1qks_A Cytochrome CD1 nitrite 99.7 2.6E-13 8.9E-18 118.6 32.5 273 35-346 198-516 (567)
186 1qks_A Cytochrome CD1 nitrite 99.7 2.9E-13 1E-17 118.3 32.3 254 48-346 166-453 (567)
187 3e5z_A Putative gluconolactona 99.7 3E-14 1E-18 115.3 24.5 219 85-345 29-269 (296)
188 3dsm_A Uncharacterized protein 99.7 4.9E-14 1.7E-18 115.6 25.6 242 59-345 18-279 (328)
189 2gop_A Trilobed protease; beta 99.7 1.1E-14 3.8E-19 120.6 21.2 224 34-324 59-332 (347)
190 3c5m_A Oligogalacturonate lyas 99.7 7.3E-16 2.5E-20 130.0 13.9 211 92-346 42-296 (396)
191 3no2_A Uncharacterized protein 99.7 1.2E-13 4E-18 110.2 25.8 213 48-309 4-230 (276)
192 3no2_A Uncharacterized protein 99.7 4.1E-14 1.4E-18 112.8 22.9 211 96-345 4-225 (276)
193 3sjl_D Methylamine dehydrogena 99.7 3.8E-14 1.3E-18 116.5 23.0 286 23-343 69-384 (386)
194 2xdw_A Prolyl endopeptidase; a 99.7 2.5E-13 8.6E-18 123.3 30.8 226 90-345 129-392 (710)
195 2bkl_A Prolyl endopeptidase; m 99.7 5.5E-14 1.9E-18 127.2 25.8 219 85-345 122-375 (695)
196 1rwi_B Serine/threonine-protei 99.6 1.2E-13 4E-18 110.2 22.5 216 86-345 26-246 (270)
197 1yr2_A Prolyl oligopeptidase; 99.6 7.8E-14 2.7E-18 127.1 23.1 244 31-325 160-444 (741)
198 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 2E-12 6.9E-17 105.4 29.4 247 31-322 15-299 (314)
199 1xip_A Nucleoporin NUP159; bet 99.6 9.5E-14 3.3E-18 114.6 21.0 146 34-206 38-191 (388)
200 2qc5_A Streptogramin B lactona 99.6 9E-12 3.1E-16 100.7 32.1 262 30-345 16-284 (300)
201 3hrp_A Uncharacterized protein 99.6 2.5E-12 8.6E-17 108.5 28.1 260 34-321 131-409 (409)
202 2mad_H Methylamine dehydrogena 99.6 1.6E-11 5.4E-16 102.2 31.5 278 23-338 57-367 (373)
203 1yr2_A Prolyl oligopeptidase; 99.6 2E-12 6.9E-17 117.9 28.4 219 90-345 167-419 (741)
204 3g4e_A Regucalcin; six bladed 99.6 1.9E-11 6.5E-16 98.8 31.1 232 30-310 9-261 (297)
205 2z2n_A Virginiamycin B lyase; 99.6 3.9E-11 1.3E-15 96.9 30.9 239 32-324 55-297 (299)
206 2mad_H Methylamine dehydrogena 99.5 1.8E-11 6.3E-16 101.8 28.3 240 59-345 48-330 (373)
207 1xip_A Nucleoporin NUP159; bet 99.5 1.8E-13 6.1E-18 113.0 15.1 166 130-346 39-227 (388)
208 3sjl_D Methylamine dehydrogena 99.5 5.7E-12 2E-16 103.6 23.0 252 48-345 43-343 (386)
209 3c75_H MADH, methylamine dehyd 99.5 1.8E-11 6.1E-16 102.5 23.6 285 22-343 108-423 (426)
210 3g4e_A Regucalcin; six bladed 99.5 9.5E-11 3.3E-15 94.7 27.4 221 88-345 17-254 (297)
211 2qe8_A Uncharacterized protein 99.5 6.7E-12 2.3E-16 103.6 20.6 268 23-345 9-303 (343)
212 3c75_H MADH, methylamine dehyd 99.5 1.1E-11 3.8E-16 103.7 21.9 248 59-345 100-382 (426)
213 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 3.8E-11 1.3E-15 97.8 24.1 222 86-345 20-280 (314)
214 3iuj_A Prolyl endopeptidase; h 99.5 5.1E-11 1.7E-15 107.7 25.6 245 30-326 125-409 (693)
215 2qc5_A Streptogramin B lactona 99.4 6.1E-10 2.1E-14 89.9 29.0 236 32-321 60-299 (300)
216 3hrp_A Uncharacterized protein 99.4 4.6E-11 1.6E-15 100.8 22.9 232 85-345 132-392 (409)
217 2ghs_A AGR_C_1268P; regucalcin 99.4 1.4E-09 4.9E-14 89.0 30.0 226 35-312 50-293 (326)
218 2hz6_A Endoplasmic reticulum t 99.4 2.6E-13 8.9E-18 113.0 6.1 204 96-344 8-215 (369)
219 2ghs_A AGR_C_1268P; regucalcin 99.4 1.6E-09 5.4E-14 88.7 28.0 216 89-345 54-284 (326)
220 2ece_A 462AA long hypothetical 99.4 5.1E-10 1.8E-14 92.8 24.0 225 95-346 93-394 (462)
221 3dr2_A Exported gluconolactona 99.4 1.4E-09 4.9E-14 88.1 26.4 234 28-319 39-303 (305)
222 1mda_H Methylamine dehydrogena 99.4 6.7E-11 2.3E-15 97.4 18.0 279 21-343 54-367 (368)
223 1npe_A Nidogen, entactin; glyc 99.4 7.4E-09 2.5E-13 82.2 29.4 250 50-345 2-263 (267)
224 1yiq_A Quinohemoprotein alcoho 99.3 3.9E-10 1.3E-14 101.4 24.0 277 50-345 122-530 (689)
225 3dr2_A Exported gluconolactona 99.3 8.7E-10 3E-14 89.4 23.1 216 87-345 48-289 (305)
226 1kb0_A Quinohemoprotein alcoho 99.3 4.1E-10 1.4E-14 101.1 22.6 277 50-345 129-532 (677)
227 2hz6_A Endoplasmic reticulum t 99.3 8.3E-13 2.8E-17 110.0 2.9 179 48-271 8-194 (369)
228 3iuj_A Prolyl endopeptidase; h 99.3 3.1E-09 1.1E-13 96.1 24.5 215 91-345 134-383 (693)
229 2iwa_A Glutamine cyclotransfer 99.2 6.2E-09 2.1E-13 81.1 21.3 194 87-324 24-239 (266)
230 1mda_H Methylamine dehydrogena 99.2 1.9E-09 6.4E-14 88.8 18.3 222 109-346 47-327 (368)
231 3q7m_A Lipoprotein YFGL, BAMB; 99.2 2.7E-08 9.4E-13 83.1 25.0 231 50-331 104-346 (376)
232 2iwa_A Glutamine cyclotransfer 99.2 3.2E-08 1.1E-12 77.2 23.1 186 119-345 10-218 (266)
233 2qe8_A Uncharacterized protein 99.2 5.2E-09 1.8E-13 86.3 19.4 241 31-319 64-318 (343)
234 1npe_A Nidogen, entactin; glyc 99.1 5E-07 1.7E-11 71.5 29.1 222 34-301 36-262 (267)
235 3q7m_A Lipoprotein YFGL, BAMB; 99.1 4.5E-08 1.5E-12 81.8 23.9 237 50-328 54-302 (376)
236 2ece_A 462AA long hypothetical 99.1 2.4E-07 8.3E-12 77.0 27.3 245 48-310 94-399 (462)
237 3hxj_A Pyrrolo-quinoline quino 99.1 1.7E-09 5.8E-14 88.6 14.2 245 35-345 61-307 (330)
238 1yiq_A Quinohemoprotein alcoho 99.1 2.9E-08 1E-12 89.3 23.2 214 60-310 185-537 (689)
239 3nol_A Glutamine cyclotransfer 99.1 4.2E-08 1.4E-12 75.6 20.7 196 82-310 39-244 (262)
240 3hxj_A Pyrrolo-quinoline quino 99.1 1.1E-08 3.9E-13 83.7 18.9 216 51-324 109-326 (330)
241 3nol_A Glutamine cyclotransfer 99.1 5.1E-08 1.7E-12 75.1 20.2 182 119-345 32-237 (262)
242 3v65_B Low-density lipoprotein 99.0 1.9E-06 6.5E-11 72.0 29.9 235 50-330 88-326 (386)
243 3nok_A Glutaminyl cyclase; bet 99.0 1.8E-07 6.3E-12 72.0 21.6 183 119-345 44-247 (268)
244 3nok_A Glutaminyl cyclase; bet 99.0 1.7E-07 5.7E-12 72.3 21.4 181 97-310 65-254 (268)
245 3mbr_X Glutamine cyclotransfer 99.0 2.7E-07 9.3E-12 70.5 21.9 190 86-310 23-223 (243)
246 1fwx_A Nitrous oxide reductase 99.0 2.3E-07 7.7E-12 80.0 23.8 261 52-322 18-361 (595)
247 1fwx_A Nitrous oxide reductase 99.0 5E-08 1.7E-12 83.9 19.2 259 48-332 100-441 (595)
248 1kb0_A Quinohemoprotein alcoho 99.0 3.1E-07 1E-11 82.6 24.8 225 60-322 192-567 (677)
249 3mbr_X Glutamine cyclotransfer 99.0 3.8E-07 1.3E-11 69.7 21.1 182 119-345 10-216 (243)
250 3v64_C Agrin; beta propeller, 99.0 7.4E-06 2.5E-10 67.4 30.1 246 33-329 33-282 (349)
251 1kv9_A Type II quinohemoprotei 99.0 1.8E-07 6E-12 84.0 21.8 153 50-210 118-337 (668)
252 4a2l_A BT_4663, two-component 98.9 1.7E-05 5.9E-10 73.0 33.1 272 36-345 175-464 (795)
253 1ijq_A LDL receptor, low-densi 98.9 1.5E-05 5E-10 64.7 31.8 234 51-329 3-245 (316)
254 2ad6_A Methanol dehydrogenase 98.8 2.4E-06 8.1E-11 75.2 24.4 154 50-211 116-340 (571)
255 4a2l_A BT_4663, two-component 98.8 2.9E-05 9.8E-10 71.5 30.9 272 33-345 262-555 (795)
256 3v64_C Agrin; beta propeller, 98.8 4.7E-05 1.6E-09 62.6 28.1 160 34-206 73-234 (349)
257 1flg_A Protein (quinoprotein e 98.7 1.7E-05 5.7E-10 69.9 26.7 75 259-345 465-541 (582)
258 2fp8_A Strictosidine synthase; 98.7 4E-05 1.4E-09 62.3 27.4 242 34-324 19-315 (322)
259 3v65_B Low-density lipoprotein 98.7 2.4E-05 8.1E-10 65.4 26.0 202 34-271 116-320 (386)
260 1w6s_A Methanol dehydrogenase 98.7 7.3E-06 2.5E-10 72.2 22.8 152 52-212 124-348 (599)
261 2p4o_A Hypothetical protein; p 98.7 7E-05 2.4E-09 60.4 28.8 236 20-302 19-270 (306)
262 3v9f_A Two-component system se 98.7 0.00011 3.9E-09 67.4 31.4 268 34-345 211-507 (781)
263 3v9f_A Two-component system se 98.7 4.2E-05 1.4E-09 70.3 28.2 251 33-325 312-571 (781)
264 3p5b_L Low density lipoprotein 98.7 0.00011 3.7E-09 61.6 32.6 237 50-330 84-328 (400)
265 3m0c_C LDL receptor, low-densi 98.6 0.00019 6.4E-09 65.4 30.5 236 50-329 396-639 (791)
266 3sov_A LRP-6, low-density lipo 98.6 0.00011 3.7E-09 59.5 28.0 234 50-329 5-245 (318)
267 1kv9_A Type II quinohemoprotei 98.6 2.1E-06 7.3E-11 77.1 17.7 203 49-272 67-336 (668)
268 3qqz_A Putative uncharacterize 98.6 8.3E-05 2.8E-09 57.6 23.0 200 123-346 21-237 (255)
269 2p4o_A Hypothetical protein; p 98.6 0.00016 5.4E-09 58.3 26.3 227 86-345 34-270 (306)
270 2xe4_A Oligopeptidase B; hydro 98.6 6.6E-05 2.3E-09 68.5 25.9 152 35-205 175-353 (751)
271 1k3i_A Galactose oxidase precu 98.5 1.2E-05 4.2E-10 72.2 19.1 117 38-164 190-327 (656)
272 3tc9_A Hypothetical hydrolase; 98.5 0.00039 1.3E-08 58.9 26.4 156 35-206 138-301 (430)
273 3qqz_A Putative uncharacterize 98.5 0.00024 8E-09 55.1 25.1 168 27-206 20-204 (255)
274 1w6s_A Methanol dehydrogenase 98.5 0.00023 8E-09 62.7 25.7 59 108-168 278-350 (599)
275 3sov_A LRP-6, low-density lipo 98.5 0.00034 1.2E-08 56.6 27.3 202 35-271 36-240 (318)
276 1ijq_A LDL receptor, low-densi 98.4 0.00035 1.2E-08 56.5 28.6 206 33-271 29-240 (316)
277 2xe4_A Oligopeptidase B; hydro 98.4 5.8E-05 2E-09 68.9 22.2 112 87-206 175-304 (751)
278 2ad6_A Methanol dehydrogenase 98.4 9.9E-05 3.4E-09 65.0 22.6 59 108-168 272-343 (571)
279 3p5b_L Low density lipoprotein 98.4 0.00056 1.9E-08 57.3 30.3 206 33-271 111-322 (400)
280 1flg_A Protein (quinoprotein e 98.4 8.6E-05 2.9E-09 65.5 21.4 59 108-168 291-363 (582)
281 3kya_A Putative phosphatase; s 98.4 0.00065 2.2E-08 58.0 25.1 162 36-206 141-341 (496)
282 1n7d_A LDL receptor, low-densi 98.4 1.6E-06 5.5E-11 78.1 9.7 235 51-329 379-621 (699)
283 3amr_A 3-phytase; beta-propell 98.3 0.00063 2.2E-08 54.9 24.4 206 100-330 42-272 (355)
284 4a0p_A LRP6, LRP-6, low-densit 98.3 0.0013 4.5E-08 58.5 29.9 233 50-328 7-243 (628)
285 3m0c_C LDL receptor, low-densi 98.3 0.0017 5.9E-08 59.2 29.4 161 33-206 423-589 (791)
286 1k3i_A Galactose oxidase precu 98.3 3.9E-05 1.3E-09 68.9 18.0 234 36-311 245-530 (656)
287 2fp8_A Strictosidine synthase; 98.3 0.00043 1.5E-08 56.2 22.6 198 35-270 81-314 (322)
288 4hw6_A Hypothetical protein, I 98.3 0.0011 3.8E-08 56.1 26.2 159 35-206 140-304 (433)
289 3amr_A 3-phytase; beta-propell 98.2 0.0013 4.5E-08 53.1 24.2 199 38-268 30-262 (355)
290 2p9w_A MAL S 1 allergenic prot 98.2 0.0014 4.9E-08 52.4 21.6 162 36-206 15-215 (334)
291 1n7d_A LDL receptor, low-densi 98.1 2.4E-05 8.3E-10 70.5 11.9 159 34-206 406-571 (699)
292 2vpj_A Kelch-like protein 12; 98.1 0.0019 6.6E-08 51.7 22.1 233 49-328 15-284 (301)
293 3s94_A LRP-6, low-density lipo 98.1 0.0051 1.7E-07 54.7 25.4 233 50-326 10-247 (619)
294 3tc9_A Hypothetical hydrolase; 98.0 0.0026 9E-08 53.8 21.9 151 87-269 140-301 (430)
295 4a0p_A LRP6, LRP-6, low-densit 98.0 0.0083 2.8E-07 53.4 28.9 200 34-271 37-239 (628)
296 3ii7_A Kelch-like protein 7; p 97.9 0.0046 1.6E-07 49.6 23.4 232 49-327 12-277 (306)
297 2xn4_A Kelch-like protein 2; s 97.9 0.0035 1.2E-07 50.2 20.3 229 49-324 16-278 (302)
298 3ei3_A DNA damage-binding prot 97.8 0.023 8E-07 54.2 26.7 179 60-270 809-1000(1158)
299 2p9w_A MAL S 1 allergenic prot 97.7 0.012 4.2E-07 47.1 19.8 169 124-322 8-215 (334)
300 2xbg_A YCF48-like protein; pho 97.7 0.014 4.9E-07 47.3 29.2 253 19-324 23-280 (327)
301 1zgk_A Kelch-like ECH-associat 97.7 0.012 4.2E-07 47.2 19.7 232 48-326 24-291 (308)
302 2xzh_A Clathrin heavy chain 1; 97.6 0.015 5.3E-07 46.3 27.5 231 60-333 51-301 (365)
303 3s94_A LRP-6, low-density lipo 97.6 0.032 1.1E-06 49.6 29.2 232 50-324 318-553 (619)
304 2uvk_A YJHT; unknown function, 97.6 0.019 6.6E-07 47.1 20.3 94 48-150 19-128 (357)
305 4asc_A Kelch repeat and BTB do 97.6 0.019 6.6E-07 46.2 21.3 142 50-206 6-174 (315)
306 1bpo_A Protein (clathrin); cla 97.6 0.024 8E-07 47.2 26.6 231 60-333 50-300 (494)
307 2xbg_A YCF48-like protein; pho 97.6 0.021 7E-07 46.4 28.6 238 33-320 79-320 (327)
308 4hw6_A Hypothetical protein, I 97.5 0.021 7.3E-07 48.3 20.0 156 130-321 140-303 (433)
309 2ism_A Putative oxidoreductase 97.4 0.043 1.5E-06 45.0 25.5 104 34-148 31-153 (352)
310 3ei3_A DNA damage-binding prot 97.4 0.11 3.9E-06 49.7 28.4 175 108-322 807-999 (1158)
311 2vpj_A Kelch-like protein 12; 97.2 0.052 1.8E-06 43.3 18.4 186 100-324 17-233 (301)
312 2woz_A Kelch repeat and BTB do 97.2 0.062 2.1E-06 43.3 22.6 142 51-207 18-185 (318)
313 3pbp_A Nucleoporin NUP82; beta 97.1 0.039 1.3E-06 45.8 16.0 148 48-202 31-208 (452)
314 2xn4_A Kelch-like protein 2; s 97.1 0.072 2.5E-06 42.5 18.3 186 100-324 18-231 (302)
315 2ism_A Putative oxidoreductase 97.1 0.096 3.3E-06 42.9 23.1 101 87-194 34-153 (352)
316 3pbp_A Nucleoporin NUP82; beta 97.0 0.11 3.7E-06 43.2 19.7 164 140-318 31-208 (452)
317 2be1_A Serine/threonine-protei 97.0 0.078 2.7E-06 42.9 16.6 112 100-212 12-136 (339)
318 3kya_A Putative phosphatase; s 96.9 0.081 2.8E-06 45.3 16.7 170 131-321 141-340 (496)
319 1zgk_A Kelch-like ECH-associat 96.8 0.1 3.6E-06 41.7 16.5 190 95-324 23-242 (308)
320 3ii7_A Kelch-like protein 7; p 96.8 0.13 4.5E-06 41.0 20.9 145 48-207 55-226 (306)
321 1xi4_A Clathrin heavy chain; a 96.8 0.24 8.2E-06 47.9 19.9 231 60-333 50-300 (1630)
322 3sre_A PON1, serum paraoxonase 96.3 0.35 1.2E-05 39.5 20.3 159 36-206 52-252 (355)
323 4asc_A Kelch repeat and BTB do 96.2 0.35 1.2E-05 38.7 18.4 186 100-324 7-223 (315)
324 2xzh_A Clathrin heavy chain 1; 96.2 0.36 1.2E-05 38.6 27.7 239 48-324 77-334 (365)
325 1xi4_A Clathrin heavy chain; a 96.1 1 3.4E-05 43.9 19.9 197 48-271 76-291 (1630)
326 3ott_A Two-component system se 96.1 0.78 2.7E-05 42.0 28.4 238 34-321 373-625 (758)
327 3sre_A PON1, serum paraoxonase 96.0 0.48 1.6E-05 38.7 21.5 159 35-205 113-297 (355)
328 3a9g_A Putative uncharacterize 96.0 0.52 1.8E-05 38.6 27.1 105 33-148 28-153 (354)
329 3a9g_A Putative uncharacterize 95.6 0.75 2.6E-05 37.6 24.7 100 87-194 32-153 (354)
330 2g8s_A Glucose/sorbosone dehyd 95.5 0.82 2.8E-05 37.4 26.0 57 290-346 271-336 (353)
331 1bpo_A Protein (clathrin); cla 95.5 0.96 3.3E-05 37.9 26.3 239 48-324 76-333 (494)
332 2woz_A Kelch repeat and BTB do 95.4 0.78 2.7E-05 36.7 17.1 185 100-324 18-233 (318)
333 2uvk_A YJHT; unknown function, 95.4 0.85 2.9E-05 37.2 18.4 94 96-196 19-128 (357)
334 3ott_A Two-component system se 95.3 1.8 6E-05 39.6 31.5 253 34-325 146-404 (758)
335 2g8s_A Glucose/sorbosone dehyd 95.1 1.1 3.9E-05 36.5 22.2 28 34-65 18-46 (353)
336 1tl2_A L10, protein (tachylect 94.7 0.72 2.5E-05 34.6 11.2 152 34-205 41-207 (236)
337 2zwa_A Leucine carboxyl methyl 93.1 4.9 0.00017 36.3 19.0 107 95-206 396-522 (695)
338 3das_A Putative oxidoreductase 93.0 3.1 0.00011 33.8 28.3 262 26-313 24-330 (347)
339 1tl2_A L10, protein (tachylect 93.0 0.52 1.8E-05 35.4 7.7 101 90-200 45-157 (236)
340 2zwa_A Leucine carboxyl methyl 91.3 8.2 0.00028 34.9 20.4 155 48-207 397-578 (695)
341 2be1_A Serine/threonine-protei 91.2 5.1 0.00018 32.4 19.9 114 50-169 11-139 (339)
342 3uc1_A DNA gyrase subunit A; D 90.3 6.1 0.00021 31.8 22.8 118 82-207 93-229 (327)
343 3qhy_B Beta-lactamase inhibito 90.0 5.8 0.0002 31.1 20.8 226 35-326 25-250 (282)
344 4gq2_M Nucleoporin NUP120; bet 89.5 12 0.00041 35.3 14.9 35 89-124 239-273 (950)
345 3qhy_B Beta-lactamase inhibito 89.4 6.6 0.00022 30.8 16.9 167 107-322 41-207 (282)
346 3b7f_A Glycosyl hydrolase, BNR 87.8 10 0.00036 31.2 24.1 68 129-197 177-254 (394)
347 4gq2_M Nucleoporin NUP120; bet 85.5 7 0.00024 36.8 10.8 76 130-206 237-317 (950)
348 3sbq_A Nitrous-oxide reductase 84.7 20 0.00068 31.4 22.5 262 51-323 72-409 (638)
349 1cru_A Protein (soluble quinop 80.8 25 0.00085 29.8 22.6 66 128-194 26-99 (454)
350 1cru_A Protein (soluble quinop 78.9 29 0.00099 29.4 28.2 108 33-149 26-163 (454)
351 3no0_A DNA gyrase subunit A; D 78.2 22 0.00076 27.7 22.4 196 100-322 37-246 (276)
352 3sbq_A Nitrous-oxide reductase 78.1 7.4 0.00025 33.9 7.3 72 129-206 323-408 (638)
353 4fhn_B Nucleoporin NUP120; pro 78.0 9.5 0.00033 36.8 9.0 29 95-124 247-275 (1139)
354 3das_A Putative oxidoreductase 78.0 26 0.00089 28.4 24.9 104 86-195 34-159 (347)
355 1sqj_A OXG-RCBH, oligoxylogluc 71.0 65 0.0022 29.7 16.9 157 33-196 14-190 (789)
356 3f7f_A Nucleoporin NUP120; nuc 69.5 11 0.00038 33.9 6.6 31 241-271 222-252 (729)
357 3f7f_A Nucleoporin NUP120; nuc 67.2 11 0.00036 34.0 6.0 37 130-169 223-259 (729)
358 4fhn_B Nucleoporin NUP120; pro 66.0 5.9 0.0002 38.2 4.6 38 130-168 239-276 (1139)
359 2wg3_C Hedgehog-interacting pr 55.9 94 0.0032 26.4 13.7 103 91-196 19-159 (463)
360 3uc1_A DNA gyrase subunit A; D 53.4 86 0.0029 25.1 25.8 200 100-322 55-279 (327)
361 3q6k_A 43.2 kDa salivary prote 52.9 96 0.0033 25.5 17.2 144 60-206 125-306 (381)
362 3no0_A DNA gyrase subunit A; D 51.8 82 0.0028 24.4 24.2 156 33-207 23-197 (276)
363 1suu_A DNA gyrase subunit A; t 51.5 89 0.0031 24.8 21.8 203 95-322 6-231 (312)
364 4a9v_A PHOX; hydrolase, beta-p 48.1 46 0.0016 29.2 6.5 55 290-346 476-544 (592)
365 2cn3_A Xyloglucanase, beta-1,4 47.6 1.6E+02 0.0056 26.7 14.4 113 34-150 23-153 (737)
366 3zwu_A Alkaline phosphatase PH 47.3 94 0.0032 27.4 8.5 59 131-193 478-548 (592)
367 4a9v_A PHOX; hydrolase, beta-p 43.3 1.6E+02 0.0054 26.0 9.0 60 130-193 477-548 (592)
368 3q6k_A 43.2 kDa salivary prote 42.9 1.4E+02 0.0048 24.6 18.1 145 109-269 124-306 (381)
369 3kci_A Probable E3 ubiquitin-p 42.8 1.4E+02 0.0047 24.5 25.3 199 100-321 64-292 (389)
370 2wg3_C Hedgehog-interacting pr 42.3 1.6E+02 0.0054 25.0 12.5 28 34-65 14-43 (463)
371 3s25_A Hypothetical 7-bladed b 40.4 1.3E+02 0.0045 23.6 26.0 98 94-206 61-176 (302)
372 1sqj_A OXG-RCBH, oligoxylogluc 37.4 2.5E+02 0.0085 25.8 12.3 112 83-197 14-143 (789)
373 1zi0_A DNA gyrase subunit A; b 36.2 1.6E+02 0.0054 23.3 21.2 206 95-322 1-226 (307)
374 3kci_A Probable E3 ubiquitin-p 31.1 2.2E+02 0.0074 23.3 32.2 211 86-322 107-345 (389)
375 4hvt_A Ritya.17583.B, post-pro 27.6 3.5E+02 0.012 24.6 21.8 68 93-161 137-226 (711)
376 3zwu_A Alkaline phosphatase PH 27.2 2.9E+02 0.0098 24.4 8.3 53 92-146 482-547 (592)
377 1olz_A Semaphorin 4D; developm 26.1 3.1E+02 0.011 24.7 8.4 58 142-201 416-477 (663)
378 3b7f_A Glycosyl hydrolase, BNR 23.5 3E+02 0.01 22.3 25.5 142 50-200 23-202 (394)
379 3al9_A Plexin-A2; beta-propell 20.6 3.4E+02 0.012 23.6 7.4 67 86-154 402-475 (539)
380 1q47_A Semaphorin 3A; beta pro 20.2 3.3E+02 0.011 23.4 7.2 69 131-201 406-487 (495)
No 1
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.9e-48 Score=318.02 Aligned_cols=274 Identities=19% Similarity=0.281 Sum_probs=237.6
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (346)
+++.++|.+|.+.|++++|+| ++.+|++++.|+ |++||+.++..+..+.. +...+.+++|. |+++ +|
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp----~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~-----~~~~v~~~~~~--~~~~-~l 70 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHP----TEPWVLTTLYSGRVELWNYETQVEVRSIQV-----TETPVRAGKFI--ARKN-WI 70 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECS----SSSEEEEEETTSEEEEEETTTTEEEEEEEC-----CSSCEEEEEEE--GGGT-EE
T ss_pred ceeEEeecCCCCceEEEEECC----CCCEEEEEcCCCcEEEEECCCCceeEEeec-----cCCcEEEEEEe--CCCC-EE
Confidence 456778899999999999999 789999999998 99999998887777664 66778888877 8888 99
Q ss_pred EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC-eeEEEecccCCCCcceEEE
Q 019117 102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-ICILIFAGAGGHRNEVLSV 180 (346)
Q Consensus 102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~ 180 (346)
++|+.|+.|++||+.+++.+..+.+|.+.|.+++|+| ++.+|++|+.|++|++||++++ .....+. +|...|.++
T Consensus 71 ~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~---~h~~~v~~v 146 (304)
T 2ynn_A 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFE---GHEHFVMCV 146 (304)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEEC---CCCSCEEEE
T ss_pred EEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhc---ccCCcEEEE
Confidence 9999999999999999999999999999999999999 8899999999999999999877 4455666 799999999
Q ss_pred EecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec----CCEEEEE
Q 019117 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL----GDFILSK 256 (346)
Q Consensus 181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~ 256 (346)
+|+|.++.+|++|+.|++|++||++.... .......|...+..+.|. +.+|+++
T Consensus 147 ~~~p~~~~~l~sgs~D~~v~iwd~~~~~~----------------------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 204 (304)
T 2ynn_A 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTP----------------------NFTLTTGQERGVNYVDYYPLPDKPYMITA 204 (304)
T ss_dssp EECTTCTTEEEEEETTSEEEEEETTCSSC----------------------SEEEECCCTTCEEEEEECCSTTCCEEEEE
T ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCCc----------------------cceeccCCcCcEEEEEEEEcCCCCEEEEE
Confidence 99996788999999999999999987221 122233566778888886 5699999
Q ss_pred eecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeee-eeeE
Q 019117 257 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL-ICFS 335 (346)
Q Consensus 257 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~ 335 (346)
+.|++|++||+++++ ++..+.+|...|.+++|+|++ .+|++|+.||.|++||+.+++....... ...+
T Consensus 205 s~D~~i~iWd~~~~~---------~~~~~~~h~~~v~~~~~~p~~--~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~ 273 (304)
T 2ynn_A 205 SDDLTIKIWDYQTKS---------CVATLEGHMSNVSFAVFHPTL--PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERS 273 (304)
T ss_dssp ETTSEEEEEETTTTE---------EEEEEECCSSCEEEEEECSSS--SEEEEEETTSCEEEEETTTCCEEEEECCSSSSE
T ss_pred cCCCeEEEEeCCCCc---------cceeeCCCCCCEEEEEECCCC--CEEEEEcCCCeEEEEECCCCceeeeccCCCccE
Confidence 999999999999876 778889999999999999999 7999999999999999999887665543 3458
Q ss_pred EEEEecCCCC
Q 019117 336 LHVKYNPQSV 345 (346)
Q Consensus 336 ~~~~~spdg~ 345 (346)
.+++|+|+|+
T Consensus 274 ~~~~~~~~~~ 283 (304)
T 2ynn_A 274 WCIATHPTGR 283 (304)
T ss_dssp EEEEECTTCG
T ss_pred EEEEECCCCC
Confidence 8999999875
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-47 Score=326.23 Aligned_cols=270 Identities=23% Similarity=0.399 Sum_probs=243.2
Q ss_pred eeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117 26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (346)
Q Consensus 26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 104 (346)
...+.+|.++|++++|+| ++.+|++|+.|+ |++||+.+++....+.. |...|.+++|. |+++ +|++|
T Consensus 101 ~~~l~gh~~~V~~~~~~p----~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~-----h~~~V~~v~~~--~~~~-~l~sg 168 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHP----VFSVMVSASEDATIKVWDYETGDFERTLKG-----HTDSVQDISFD--HSGK-LLASC 168 (410)
T ss_dssp SCEEECCSSCEEEEEECS----SSSEEEEEESSSCEEEEETTTCCCCEEECC-----CSSCEEEEEEC--TTSS-EEEEE
T ss_pred eEeecccCCcEEEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEEec-----cCCcEEEEEEc--CCCC-EEEEE
Confidence 456789999999999999 789999999998 99999999888777764 77888888876 8898 99999
Q ss_pred ecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecC
Q 019117 105 GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP 184 (346)
Q Consensus 105 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 184 (346)
+.|++|++||+.+++.+..+.+|...|.+++|+| ++.+|++|+.|++|++||+++++++..+. +|...|.++.++|
T Consensus 169 s~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~---~h~~~v~~~~~~~ 244 (410)
T 1vyh_C 169 SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFT---GHREWVRMVRPNQ 244 (410)
T ss_dssp ETTSCCCEEETTSSCEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEE---CCSSCEEEEEECT
T ss_pred eCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEe---CCCccEEEEEECC
Confidence 9999999999999999999999999999999999 88999999999999999999999999998 7999999999998
Q ss_pred CCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---------------
Q 019117 185 SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--------------- 249 (346)
Q Consensus 185 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------------- 249 (346)
++.++++++.|+.|++||++. ......+..|...|.++.|+
T Consensus 245 -~g~~l~s~s~D~~v~vwd~~~-----------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 300 (410)
T 1vyh_C 245 -DGTLIASCSNDQTVRVWVVAT-----------------------KECKAELREHRHVVECISWAPESSYSSISEATGSE 300 (410)
T ss_dssp -TSSEEEEEETTSCEEEEETTT-----------------------CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred -CCCEEEEEcCCCeEEEEECCC-----------------------CceeeEecCCCceEEEEEEcCcccccchhhhcccc
Confidence 999999999999999999988 33456677899999999996
Q ss_pred -------CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117 250 -------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (346)
Q Consensus 250 -------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~ 322 (346)
+.+|++|+.|++|++||+++++ .+..+.+|...|.+++|+|++ .+|++|+.||.|++||+.+
T Consensus 301 ~~~~~~~g~~l~sgs~D~~i~iwd~~~~~---------~~~~~~~h~~~v~~v~~~~~g--~~l~s~s~D~~i~vwd~~~ 369 (410)
T 1vyh_C 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGM---------CLMTLVGHDNWVRGVLFHSGG--KFILSCADDKTLRVWDYKN 369 (410)
T ss_dssp -------CCEEEEEETTSEEEEEETTTTE---------EEEEEECCSSCEEEEEECSSS--SCEEEEETTTEEEEECCTT
T ss_pred ccccCCCCCEEEEEeCCCeEEEEECCCCc---------eEEEEECCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEECCC
Confidence 3489999999999999999876 677888999999999999999 7899999999999999999
Q ss_pred CCcceeee-eeeeEEEEEecCCCCC
Q 019117 323 SPPVLIAR-LICFSLHVKYNPQSVY 346 (346)
Q Consensus 323 ~~~~~~~~-~~~~~~~~~~spdg~~ 346 (346)
++.+..+. +...+.+++|+|++++
T Consensus 370 ~~~~~~~~~h~~~v~~l~~~~~~~~ 394 (410)
T 1vyh_C 370 KRCMKTLNAHEHFVTSLDFHKTAPY 394 (410)
T ss_dssp SCCCEEEECCSSCEEEEEECSSSSC
T ss_pred CceEEEEcCCCCcEEEEEEcCCCCE
Confidence 88666543 4456999999999875
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.1e-47 Score=312.14 Aligned_cols=279 Identities=14% Similarity=0.142 Sum_probs=239.3
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (346)
..+.+.+++|.++|++++|+|+...++.+|++|+.|+ |++|++..+...... ....|...|.++++. +++. ++
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~---~l~gh~~~v~~~~~~--~~~~-~l 95 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQW---SLEGHQLGVVSVDIS--HTLP-IA 95 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEE---EECCCSSCEEEEEEC--SSSS-EE
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeee---eeccCCCCEEEEEEC--CCCC-EE
Confidence 3445677899999999999985444678999999999 999998766532211 123478889888776 8888 99
Q ss_pred EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117 102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 181 (346)
Q Consensus 102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 181 (346)
++++.|++|++||+.+++.+..+..|...+.+++|+| ++++|++++.|+.|++||+++++....+. .|...|.+++
T Consensus 96 ~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~---~~~~~v~~~~ 171 (321)
T 3ow8_A 96 ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLD---TRGKFILSIA 171 (321)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEE---CSSSCEEEEE
T ss_pred EEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEec---CCCceEEEEE
Confidence 9999999999999999999999999999999999999 89999999999999999999999988887 6889999999
Q ss_pred ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeec
Q 019117 182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD 259 (346)
Q Consensus 182 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d 259 (346)
|+| ++++|++++.|+.|++||+++ ...+..+..|...|.+++|+ +++|++++.|
T Consensus 172 ~sp-dg~~lasg~~dg~i~iwd~~~-----------------------~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~d 227 (321)
T 3ow8_A 172 YSP-DGKYLASGAIDGIINIFDIAT-----------------------GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDD 227 (321)
T ss_dssp ECT-TSSEEEEEETTSCEEEEETTT-----------------------TEEEEEECCCSSCCCEEEECTTSCEEEEECTT
T ss_pred ECC-CCCEEEEEcCCCeEEEEECCC-----------------------CcEEEEEcccCCceeEEEEcCCCCEEEEEcCC
Confidence 999 999999999999999999988 34566788899999999998 7899999999
Q ss_pred CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee-eeeeeEEEE
Q 019117 260 NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA-RLICFSLHV 338 (346)
Q Consensus 260 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~ 338 (346)
++|++||+++.+ .+..+.+|...|.+++|+|++ .+|++++.|+.|++||+.+++.+..+ .+...+.++
T Consensus 228 g~i~iwd~~~~~---------~~~~~~~h~~~v~~~~~sp~~--~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v 296 (321)
T 3ow8_A 228 GYIKIYDVQHAN---------LAGTLSGHASWVLNVAFCPDD--THFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGV 296 (321)
T ss_dssp SCEEEEETTTCC---------EEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred CeEEEEECCCcc---------eeEEEcCCCCceEEEEECCCC--CEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEE
Confidence 999999998776 677888999999999999999 78999999999999999998766544 345669999
Q ss_pred EecCCCCC
Q 019117 339 KYNPQSVY 346 (346)
Q Consensus 339 ~~spdg~~ 346 (346)
+|+|+|++
T Consensus 297 ~~s~~g~~ 304 (321)
T 3ow8_A 297 KYNGNGSK 304 (321)
T ss_dssp EECTTSSE
T ss_pred EECCCCCE
Confidence 99999863
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.4e-45 Score=305.92 Aligned_cols=274 Identities=17% Similarity=0.298 Sum_probs=236.4
Q ss_pred cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (346)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (346)
...+...++++|.++|++++|+| ++++|++++.|+ |++||..++..+..+.. +...|.+++|+ |+++
T Consensus 43 ~~~~~~~~l~gH~~~v~~~~~s~----d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-----~~~~v~~~~~s--~~~~- 110 (340)
T 1got_B 43 IQMRTRRTLRGHLAKIYAMHWGT----DSRLLLSASQDGKLIIWDSYTTNKVHAIPL-----RSSWVMTCAYA--PSGN- 110 (340)
T ss_dssp CCCCEEEEECCCSSCEEEEEECT----TSSEEEEEETTTEEEEEETTTCCEEEEEEC-----SSSCEEEEEEC--TTSS-
T ss_pred ccchhheeecCCCCceEEEEECC----CCCEEEEEeCCCcEEEEECCCCCcceEeec-----CCccEEEEEEC--CCCC-
Confidence 34667788999999999999999 789999999999 99999998887776654 66778777776 8998
Q ss_pred EEEEeecCCeEEEEEccCc----ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCc
Q 019117 100 FLVAGGINGIIRVIDVSNE----KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN 175 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 175 (346)
+|++|+.|+.|++|++.++ +....+.+|.+.|.++.|++ ++ .+++++.|++|++||+++++.+..+. +|..
T Consensus 111 ~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~~~~~~~---~h~~ 185 (340)
T 1got_B 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DN-QIVTSSGDTTCALWDIETGQQTTTFT---GHTG 185 (340)
T ss_dssp EEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEE-TT-EEEEEETTSCEEEEETTTTEEEEEEC---CCSS
T ss_pred EEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECC-CC-cEEEEECCCcEEEEECCCCcEEEEEc---CCCC
Confidence 9999999999999999875 35567789999999999998 54 58999999999999999999999988 7999
Q ss_pred ceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEE
Q 019117 176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI 253 (346)
Q Consensus 176 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l 253 (346)
.|.+++|+| ++.++++|+.|+.|++||++. ......+..|...|.+++|+ +++|
T Consensus 186 ~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~-----------------------~~~~~~~~~h~~~v~~v~~~p~~~~l 241 (340)
T 1got_B 186 DVMSLSLAP-DTRLFVSGACDASAKLWDVRE-----------------------GMCRQTFTGHESDINAICFFPNGNAF 241 (340)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEETTT-----------------------CSEEEEECCCSSCEEEEEECTTSSEE
T ss_pred ceEEEEECC-CCCEEEEEeCCCcEEEEECCC-----------------------CeeEEEEcCCcCCEEEEEEcCCCCEE
Confidence 999999999 899999999999999999988 34566788899999999998 7899
Q ss_pred EEEeecCeEEEEcCCCCCCCCCCcccccccccc--CCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee-e
Q 019117 254 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP--VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA-R 330 (346)
Q Consensus 254 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~ 330 (346)
++++.|++|++||+++.+ .+..+. .+...|.+++|+|++ .+|++|+.||.|++||+.+++.+... .
T Consensus 242 ~s~s~d~~v~iwd~~~~~---------~~~~~~~~~~~~~v~~~~~s~~g--~~l~~g~~d~~i~vwd~~~~~~~~~~~~ 310 (340)
T 1got_B 242 ATGSDDATCRLFDLRADQ---------ELMTYSHDNIICGITSVSFSKSG--RLLLAGYDDFNCNVWDALKADRAGVLAG 310 (340)
T ss_dssp EEEETTSCEEEEETTTTE---------EEEEECCTTCCSCEEEEEECTTS--SEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEcCCCcEEEEECCCCc---------EEEEEccCCcccceEEEEECCCC--CEEEEECCCCeEEEEEcccCcEeeEeec
Confidence 999999999999998765 233332 234579999999999 79999999999999999988765543 3
Q ss_pred eeeeEEEEEecCCCCC
Q 019117 331 LICFSLHVKYNPQSVY 346 (346)
Q Consensus 331 ~~~~~~~~~~spdg~~ 346 (346)
+.+.+.+++|+|||++
T Consensus 311 h~~~v~~~~~s~dg~~ 326 (340)
T 1got_B 311 HDNRVSCLGVTDDGMA 326 (340)
T ss_dssp CSSCEEEEEECTTSSC
T ss_pred CCCcEEEEEEcCCCCE
Confidence 4556899999999975
No 5
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.2e-46 Score=311.55 Aligned_cols=271 Identities=14% Similarity=0.136 Sum_probs=218.3
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccC-------ceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEG-------GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 102 (346)
..|...|.+++|+| +|++|++++++.+++||.... ........ ....+...|.+++|+ |++ .|+
T Consensus 27 ~~~~~~v~~~~fs~----dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s--~d~--~l~ 97 (344)
T 4gqb_B 27 ACMERQLEAARYRS----DGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCS-AGVQTEAGVADLTWV--GER--GIL 97 (344)
T ss_dssp SSCCSEEEEEEECT----TSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCS-EEEEESSCEEEEEEE--TTT--EEE
T ss_pred ccccCCEEEEEECC----CCCEEEEEeCCceEEeeceeeeeccccccCCcceee-eeeccCCCEEEEEEe--CCC--eEE
Confidence 56788899999999 889999998766888873211 00000000 001144568888887 775 688
Q ss_pred EeecCCeEEEEEccCcceeee----eccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceE
Q 019117 103 AGGINGIIRVIDVSNEKLHKS----FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 178 (346)
Q Consensus 103 ~~~~dg~i~iwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 178 (346)
+|+.||+|+|||+.+++.+.. ..+|.+.|++++|+| ++++|++|+.|++|++||+++++.+..+. +|...|+
T Consensus 98 ~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~---~h~~~V~ 173 (344)
T 4gqb_B 98 VASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYR---AHAAQVT 173 (344)
T ss_dssp EEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEE
T ss_pred EEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEc---CcCCceE
Confidence 999999999999998875543 347999999999999 89999999999999999999999999998 8999999
Q ss_pred EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE--eecccceEEEEec---CCEE
Q 019117 179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA--SVHSNYVDCNRWL---GDFI 253 (346)
Q Consensus 179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~---~~~l 253 (346)
+++|+|++..+|++++.|++|++||++..+ +...+ ..|...+.+++|+ +++|
T Consensus 174 ~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~p~~~~~l 230 (344)
T 4gqb_B 174 CVAASPHKDSVFLSCSEDNRILLWDTRCPK-----------------------PASQIGCSAPGYLPTSLAWHPQQSEVF 230 (344)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTSSS-----------------------CEEECC----CCCEEEEEECSSCTTEE
T ss_pred EEEecCCCCCceeeeccccccccccccccc-----------------------eeeeeecceeeccceeeeecCCCCcce
Confidence 999999555789999999999999999833 22222 3455678899997 5689
Q ss_pred EEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee
Q 019117 254 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC 333 (346)
Q Consensus 254 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 333 (346)
++|+.|++|++||+++++ .+..+.+|...|++++|+|++. .+|++|+.|+.|+|||+.+++......+.+
T Consensus 231 ~sg~~dg~v~~wd~~~~~---------~~~~~~~h~~~v~~v~fsp~g~-~~lasgs~D~~i~vwd~~~~~~~~~~~H~~ 300 (344)
T 4gqb_B 231 VFGDENGTVSLVDTKSTS---------CVLSSAVHSQCVTGLVFSPHSV-PFLASLSEDCSLAVLDSSLSELFRSQAHRD 300 (344)
T ss_dssp EEEETTSEEEEEESCC-----------CCEEEECCSSCEEEEEECSSSS-CCEEEEETTSCEEEECTTCCEEEEECCCSS
T ss_pred EEeccCCcEEEEECCCCc---------EEEEEcCCCCCEEEEEEccCCC-eEEEEEeCCCeEEEEECCCCcEEEEcCCCC
Confidence 999999999999999876 6788899999999999999985 589999999999999999987665556667
Q ss_pred eEEEEEecCCCCC
Q 019117 334 FSLHVKYNPQSVY 346 (346)
Q Consensus 334 ~~~~~~~spdg~~ 346 (346)
.+++++|+|+|++
T Consensus 301 ~V~~v~~sp~~~~ 313 (344)
T 4gqb_B 301 FVRDATWSPLNHS 313 (344)
T ss_dssp CEEEEEECSSSTT
T ss_pred CEEEEEEeCCCCe
Confidence 7999999999863
No 6
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1e-44 Score=302.13 Aligned_cols=275 Identities=19% Similarity=0.248 Sum_probs=234.4
Q ss_pred ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (346)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (346)
..+....|.+|.++|++++|+| ++.+||+|+.|+ |++||..++.....+.. +...|.+++|+ |+|. +
T Consensus 53 ~~~~~~~l~gH~~~V~~~~~s~----d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-----~~~~v~~~~~s--p~g~-~ 120 (354)
T 2pbi_B 53 VMKTRRTLKGHGNKVLCMDWCK----DKRRIVSSSQDGKVIVWDSFTTNKEHAVTM-----PCTWVMACAYA--PSGC-A 120 (354)
T ss_dssp CCCEEEEEECCSSCEEEEEECT----TSSEEEEEETTSEEEEEETTTCCEEEEEEC-----SSSCCCEEEEC--TTSS-E
T ss_pred ccEEEEEecCCCCeEEEEEECC----CCCEEEEEeCCCeEEEEECCCCCcceEEec-----CCCCEEEEEEC--CCCC-E
Confidence 3566778899999999999999 789999999999 99999888877666653 55667667665 9999 9
Q ss_pred EEEeecCCeEEEEEccCc------ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC
Q 019117 101 LVAGGINGIIRVIDVSNE------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR 174 (346)
Q Consensus 101 l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 174 (346)
|++|+.|+.+++|++... .....+.+|...|.+++|+| ++..|++++.|++|++||+++++.+..+. +|.
T Consensus 121 lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~~~---~h~ 196 (354)
T 2pbi_B 121 IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQSFH---GHG 196 (354)
T ss_dssp EEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEE---CCS
T ss_pred EEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEc---CCC
Confidence 999999999999998643 34566778999999999999 88899999999999999999999999998 799
Q ss_pred cceEEEEecCC-CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CC
Q 019117 175 NEVLSVDFHPS-DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD 251 (346)
Q Consensus 175 ~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~ 251 (346)
..|.+++|+|. ++.+|++|+.||.|++||+++ ...+..+..|...|.+++|+ ++
T Consensus 197 ~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-----------------------~~~~~~~~~h~~~v~~v~~~p~~~ 253 (354)
T 2pbi_B 197 ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-----------------------GQCVQAFETHESDVNSVRYYPSGD 253 (354)
T ss_dssp SCEEEEEECCCSSCCEEEEEETTSCEEEEETTT-----------------------CCEEEEECCCSSCEEEEEECTTSS
T ss_pred CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC-----------------------CcEEEEecCCCCCeEEEEEeCCCC
Confidence 99999999873 358999999999999999998 34566788899999999998 78
Q ss_pred EEEEEeecCeEEEEcCCCCCCCCCCcccccccccc--CCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee
Q 019117 252 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP--VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA 329 (346)
Q Consensus 252 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 329 (346)
+|++++.|++|++||++..+ .+..+. .+...+.+++|+|++ .+|++|+.|+.|++||+.+++.+...
T Consensus 254 ~l~s~s~D~~v~lwd~~~~~---------~~~~~~~~~~~~~~~~~~~s~~g--~~l~~g~~d~~i~vwd~~~~~~~~~l 322 (354)
T 2pbi_B 254 AFASGSDDATCRLYDLRADR---------EVAIYSKESIIFGASSVDFSLSG--RLLFAGYNDYTINVWDVLKGSRVSIL 322 (354)
T ss_dssp EEEEEETTSCEEEEETTTTE---------EEEEECCTTCCSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCc---------EEEEEcCCCcccceeEEEEeCCC--CEEEEEECCCcEEEEECCCCceEEEE
Confidence 99999999999999998765 222222 233578999999999 79999999999999999988765443
Q ss_pred -eeeeeEEEEEecCCCCC
Q 019117 330 -RLICFSLHVKYNPQSVY 346 (346)
Q Consensus 330 -~~~~~~~~~~~spdg~~ 346 (346)
.+...+.+++|+|||++
T Consensus 323 ~~h~~~v~~l~~spdg~~ 340 (354)
T 2pbi_B 323 FGHENRVSTLRVSPDGTA 340 (354)
T ss_dssp CCCSSCEEEEEECTTSSC
T ss_pred ECCCCcEEEEEECCCCCE
Confidence 34566999999999975
No 7
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=8.9e-45 Score=300.35 Aligned_cols=251 Identities=16% Similarity=0.171 Sum_probs=212.4
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 108 (346)
..|...|++++|+| + ..|++|+.|+ |+|||+.+++....+... ...|...|.+++|+ |+|+ +|++|+.|+
T Consensus 79 ~~~~~~v~~~~~s~----d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~-~~~H~~~V~~v~~s--pdg~-~l~sgs~d~ 149 (344)
T 4gqb_B 79 VQTEAGVADLTWVG----E-RGILVASDSGAVELWELDENETLIVSKFC-KYEHDDIVSTVSVL--SSGT-QAVSGSKDI 149 (344)
T ss_dssp EEESSCEEEEEEET----T-TEEEEEETTSEEEEEEECTTSSCEEEEEE-EECCSSCEEEEEEC--TTSS-EEEEEETTS
T ss_pred eccCCCEEEEEEeC----C-CeEEEEECCCEEEEEeccCCCceeEeecc-ccCCCCCEEEEEEC--CCCC-EEEEEeCCC
Confidence 34667899999998 4 4677788887 999999988876554422 23488899988887 9999 999999999
Q ss_pred eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCc
Q 019117 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY 188 (346)
Q Consensus 109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 188 (346)
+|++||+.+++.+..+.+|.+.|.+++|+|++..+|++++.|++|++||+++++....+... .+...+.+++|+|.++.
T Consensus 150 ~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~ 228 (344)
T 4gqb_B 150 CIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS-APGYLPTSLAWHPQQSE 228 (344)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSSCTT
T ss_pred eEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc-eeeccceeeeecCCCCc
Confidence 99999999999999999999999999999955578999999999999999999988877521 35667999999997788
Q ss_pred EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--C-CEEEEEeecCeEEEE
Q 019117 189 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--G-DFILSKSVDNEIVLW 265 (346)
Q Consensus 189 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~iw 265 (346)
++++|+.||.|++||+++ ..++..+..|...|++++|+ + ++|++++.|++|+||
T Consensus 229 ~l~sg~~dg~v~~wd~~~-----------------------~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vw 285 (344)
T 4gqb_B 229 VFVFGDENGTVSLVDTKS-----------------------TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVL 285 (344)
T ss_dssp EEEEEETTSEEEEEESCC-------------------------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEE
T ss_pred ceEEeccCCcEEEEECCC-----------------------CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEE
Confidence 999999999999999998 45677889999999999998 4 579999999999999
Q ss_pred cCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 266 EPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 266 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
|+.+++ +..+.+|.+.|++++|+|+++ .+|++++.||.|++|++.+..
T Consensus 286 d~~~~~----------~~~~~~H~~~V~~v~~sp~~~-~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 286 DSSLSE----------LFRSQAHRDFVRDATWSPLNH-SLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp CTTCCE----------EEEECCCSSCEEEEEECSSST-TEEEEEETTSCEEEEECCC--
T ss_pred ECCCCc----------EEEEcCCCCCEEEEEEeCCCC-eEEEEEcCCCeEEEEECCCCC
Confidence 998765 345678999999999999985 478899999999999998764
No 8
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=8.6e-46 Score=311.75 Aligned_cols=281 Identities=19% Similarity=0.268 Sum_probs=235.8
Q ss_pred cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (346)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (346)
..+.+..+|++|.++|++++|+| ++.+|++|+.|+ |++||..+++....+.. |...|.+++|+ |+|+
T Consensus 54 ~~~~~~~~l~gH~~~V~~~~~sp----~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-----h~~~v~~~~~s--~~g~- 121 (380)
T 3iz6_a 54 TDLVCCRTLQGHSGKVYSLDWTP----EKNWIVSASQDGRLIVWNALTSQKTHAIKL-----HCPWVMECAFA--PNGQ- 121 (380)
T ss_dssp CCCEEEEEECCCSSCEEEEEECT----TSSCEEEEETTSEEEEEETTTTEEEEEEEC-----CCTTCCCCEEC--TTSS-
T ss_pred ceeEEeecccccccEEEEEEEcC----CCCEEEEEeCCCeEEEEECCCCccceEEec-----CCCCEEEEEEC--CCCC-
Confidence 34667788999999999999999 789999999999 99999998888777764 56667777765 9999
Q ss_pred EEEEeecCCeEEEEEccCcc-------eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecc--c
Q 019117 100 FLVAGGINGIIRVIDVSNEK-------LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG--A 170 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~ 170 (346)
+|++|+.|+.+++||+.+.. ....+.+|.+.|.++.|.|.++..|++|+.|++|++||+++++.+..+.. .
T Consensus 122 ~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~ 201 (380)
T 3iz6_a 122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFP 201 (380)
T ss_dssp EEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSS
T ss_pred EEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccC
Confidence 99999999999999986532 34567899999999999996677899999999999999999998887732 1
Q ss_pred CCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-
Q 019117 171 GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL- 249 (346)
Q Consensus 171 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 249 (346)
.+|...|.+++|+|.++.++++|+.|++|++||++.. ...+..+.+|...|.+++|+
T Consensus 202 ~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~----------------------~~~~~~~~~h~~~v~~v~~~p 259 (380)
T 3iz6_a 202 SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT----------------------SRAVRTYHGHEGDINSVKFFP 259 (380)
T ss_dssp SSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT----------------------CCCCEEECCCSSCCCEEEECT
T ss_pred CCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC----------------------CcceEEECCcCCCeEEEEEec
Confidence 3689999999998767899999999999999999851 23466788899999999998
Q ss_pred -CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccC-------CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117 250 -GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-------PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (346)
Q Consensus 250 -~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~ 321 (346)
+++|++++.|++|++||+++++ .+..+.. +...|.+++|+|++ .+|++|+.||.|++||+.
T Consensus 260 ~~~~l~s~s~D~~i~lwd~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~g~~dg~i~vwd~~ 328 (380)
T 3iz6_a 260 DGQRFGTGSDDGTCRLFDMRTGH---------QLQVYNREPDRNDNELPIVTSVAFSISG--RLLFAGYSNGDCYVWDTL 328 (380)
T ss_dssp TSSEEEEECSSSCEEEEETTTTE---------EEEEECCCCSSSCCSSCSCSEEEECSSS--SEEEEECTTSCEEEEETT
T ss_pred CCCeEEEEcCCCeEEEEECCCCc---------EEEEecccccccccccCceEEEEECCCC--CEEEEEECCCCEEEEECC
Confidence 7899999999999999999876 2222222 22358999999999 799999999999999999
Q ss_pred CCCcceee-----eeeeeEEEEEecCCCCC
Q 019117 322 SSPPVLIA-----RLICFSLHVKYNPQSVY 346 (346)
Q Consensus 322 ~~~~~~~~-----~~~~~~~~~~~spdg~~ 346 (346)
+++..... .+.+.+.+++|+|||++
T Consensus 329 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 358 (380)
T 3iz6_a 329 LAEMVLNLGTLQNSHEGRISCLGLSSDGSA 358 (380)
T ss_dssp TCCEEEEECCSCSSCCCCCCEEEECSSSSE
T ss_pred CCceEEEEecccCCCCCceEEEEECCCCCE
Confidence 88765443 34556899999999974
No 9
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=9.4e-46 Score=308.53 Aligned_cols=273 Identities=16% Similarity=0.166 Sum_probs=216.9
Q ss_pred cccCCCceEEEEEEeecCCCccEEEEEcC------Cc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGG------NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (346)
Q Consensus 29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~------~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (346)
...|...|++|+|+| ||++||+++. |+ |++|+..++.....+.... ..|...|.+++|+ |+++ +
T Consensus 38 p~~H~~~V~~v~fSp----DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~-~~~~~~V~~~~~s--~d~~--~ 108 (357)
T 4g56_B 38 PACMEVQIGAVRYRR----DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAG-VQTEAGVTDVAWV--SEKG--I 108 (357)
T ss_dssp --CCCSEEEEEEECS----SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEE-EECSSCEEEEEEE--TTTE--E
T ss_pred cccccCCEEEEEECC----CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEeccc-CCCCCCEEEEEEc--CCCC--E
Confidence 357999999999999 8999999997 44 8888876655433222111 1266789888887 8875 5
Q ss_pred EEeecCCeEEEEEccCcceee----eeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcce
Q 019117 102 VAGGINGIIRVIDVSNEKLHK----SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV 177 (346)
Q Consensus 102 ~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 177 (346)
++++.||+|+|||+.+++... ...+|...|.+++|+| ++++|++|+.|++|++||+++++.+..+. +|...|
T Consensus 109 l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~---~h~~~v 184 (357)
T 4g56_B 109 LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYN---AHSSEV 184 (357)
T ss_dssp EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCE
T ss_pred EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEc---CCCCCE
Confidence 677889999999998876443 3447999999999999 89999999999999999999999999998 799999
Q ss_pred EEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEE
Q 019117 178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFIL 254 (346)
Q Consensus 178 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~ 254 (346)
++++|+|++..++++++.|+.|++||+++.+.. .......|...+.+++|+ +.+|+
T Consensus 185 ~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~---------------------~~~~~~~~~~~v~~v~~sp~~~~~la 243 (357)
T 4g56_B 185 NCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA---------------------TRIDFCASDTIPTSVTWHPEKDDTFA 243 (357)
T ss_dssp EEEEECTTCSSCEEEEETTSCEEECCTTSSSCB---------------------CBCCCTTCCSCEEEEEECTTSTTEEE
T ss_pred EEEEEccCCCceeeeeccCCceEEEECCCCcee---------------------eeeeeccccccccchhhhhcccceEE
Confidence 999999955568999999999999999873311 111233466778999997 56899
Q ss_pred EEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeee
Q 019117 255 SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICF 334 (346)
Q Consensus 255 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 334 (346)
+++.|+.|++||+++++ .+..+.+|...|++++|+|++. .+|++|+.|+.|+|||+++++.+....+.+.
T Consensus 244 ~g~~d~~i~~wd~~~~~---------~~~~~~~~~~~v~~l~~sp~~~-~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~ 313 (357)
T 4g56_B 244 CGDETGNVSLVNIKNPD---------SAQTSAVHSQNITGLAYSYHSS-PFLASISEDCTVAVLDADFSEVFRDLSHRDF 313 (357)
T ss_dssp EEESSSCEEEEESSCGG---------GCEEECCCSSCEEEEEECSSSS-CCEEEEETTSCEEEECTTSCEEEEECCCSSC
T ss_pred EeecccceeEEECCCCc---------EeEEEeccceeEEEEEEcCCCC-CEEEEEeCCCEEEEEECCCCcEeEECCCCCC
Confidence 99999999999999876 6778888999999999999985 5899999999999999999987777777778
Q ss_pred EEEEEecC-CCC
Q 019117 335 SLHVKYNP-QSV 345 (346)
Q Consensus 335 ~~~~~~sp-dg~ 345 (346)
+++++|+| |++
T Consensus 314 V~~vafsP~d~~ 325 (357)
T 4g56_B 314 VTGVAWSPLDHS 325 (357)
T ss_dssp EEEEEECSSSTT
T ss_pred EEEEEEeCCCCC
Confidence 99999999 665
No 10
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.6e-44 Score=295.55 Aligned_cols=278 Identities=18% Similarity=0.295 Sum_probs=229.1
Q ss_pred ccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceee--eEeeeecCCCccceEEEEEEEcCC
Q 019117 20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIA--ALQSYVDEDKEESFYTVSWACNVD 96 (346)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~ 96 (346)
.+.+.+..+|.+|.++|++++|+|. .+++|++|+.|+ |++|++....... .+..+ ..|...|.+++|. |+
T Consensus 4 ~~~~~l~~~l~gH~~~V~~l~~~~~---~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~--~~h~~~v~~~~~s--~d 76 (319)
T 3frx_A 4 NEVLVLRGTLEGHNGWVTSLATSAG---QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF--KGHSHIVQDCTLT--AD 76 (319)
T ss_dssp CEEEEEEEEECCCSSCEEEEEECSS---CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEE--ECCSSCEEEEEEC--TT
T ss_pred ceEEEEEEEEccccceEEEEEccCC---CccEEEEecCCccEEEecCCCCCccccccceEE--eCCcccEEEEEEC--CC
Confidence 4557788899999999999999982 347999999999 9999987543221 12222 2478889888876 99
Q ss_pred CCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcc
Q 019117 97 GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE 176 (346)
Q Consensus 97 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 176 (346)
++ +|++|+.|++|++||+.+++.+..+.+|...|.+++|+| ++.+|++|+.|++|++||++ ++.+..+. +|...
T Consensus 77 g~-~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~-~~~~~~~~---~h~~~ 150 (319)
T 3frx_A 77 GA-YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIK-GQCLATLL---GHNDW 150 (319)
T ss_dssp SS-EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSCEEEEEETTSCEEEEETT-SCEEEEEC---CCSSC
T ss_pred CC-EEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECC-CCeEEEEe---ccCCc
Confidence 98 999999999999999999999999999999999999999 88999999999999999997 55666776 79999
Q ss_pred eEEEEecCC-----CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--
Q 019117 177 VLSVDFHPS-----DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-- 249 (346)
Q Consensus 177 v~~~~~~~~-----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 249 (346)
|.++.|+|. ++..+++++.|+.|++||++. ......+..|...|.+++|+
T Consensus 151 v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-----------------------~~~~~~~~~h~~~v~~~~~sp~ 207 (319)
T 3frx_A 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-----------------------FQIEADFIGHNSNINTLTASPD 207 (319)
T ss_dssp EEEEEECCC------CCEEEEEETTSCEEEEETTT-----------------------TEEEEEECCCCSCEEEEEECTT
T ss_pred EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc-----------------------chhheeecCCCCcEEEEEEcCC
Confidence 999999983 234899999999999999987 33455677899999999998
Q ss_pred CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee
Q 019117 250 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA 329 (346)
Q Consensus 250 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 329 (346)
+++|++++.|++|++||+.+.+ .+..+..+ ..|.+++|+|++ .+|++++.+ .+++|++..+..+...
T Consensus 208 g~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~-~~v~~~~~sp~~--~~la~~~~~-~i~v~~~~~~~~~~~~ 274 (319)
T 3frx_A 208 GTLIASAGKDGEIMLWNLAAKK---------AMYTLSAQ-DEVFSLAFSPNR--YWLAAATAT-GIKVFSLDPQYLVDDL 274 (319)
T ss_dssp SSEEEEEETTCEEEEEETTTTE---------EEEEEECC-SCEEEEEECSSS--SEEEEEETT-EEEEEEETTEEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCc---------EEEEecCC-CcEEEEEEcCCC--CEEEEEcCC-CcEEEEeCcCeeeecc
Confidence 7899999999999999999876 45555544 589999999999 678777654 5999999876543322
Q ss_pred e---------eeeeEEEEEecCCCCC
Q 019117 330 R---------LICFSLHVKYNPQSVY 346 (346)
Q Consensus 330 ~---------~~~~~~~~~~spdg~~ 346 (346)
. ....+.+++|+|||++
T Consensus 275 ~~~~~~~~~~~~~~v~~~~~spdg~~ 300 (319)
T 3frx_A 275 RPEFAGYSKAAEPHAVSLAWSADGQT 300 (319)
T ss_dssp CCCCTTCCGGGCCCEEEEEECTTSSE
T ss_pred CccccccccCcCcceeEEEECCCCCE
Confidence 2 2345789999999975
No 11
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.3e-44 Score=297.18 Aligned_cols=249 Identities=16% Similarity=0.282 Sum_probs=224.5
Q ss_pred ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (346)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (346)
...+...+.+|...|.+++|+| ++.++++++.|+ |++||+.+++.+..+.. +...+.+++|+ |+++ +
T Consensus 69 ~~~~~~~l~gh~~~v~~~~~~~----~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~-----~~~~~~~~~~s--pdg~-~ 136 (321)
T 3ow8_A 69 RLDLQWSLEGHQLGVVSVDISH----TLPIAASSSLDAHIRLWDLENGKQIKSIDA-----GPVDAWTLAFS--PDSQ-Y 136 (321)
T ss_dssp EEEEEEEECCCSSCEEEEEECS----SSSEEEEEETTSEEEEEETTTTEEEEEEEC-----CTTCCCCEEEC--TTSS-E
T ss_pred CeeeeeeeccCCCCEEEEEECC----CCCEEEEEeCCCcEEEEECCCCCEEEEEeC-----CCccEEEEEEC--CCCC-E
Confidence 3445567899999999999999 778999999998 99999999888777654 44556666665 9999 9
Q ss_pred EEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180 (346)
Q Consensus 101 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 180 (346)
|++++.||.|++|++.+++....+..|...|.+++|+| ++++|++|+.|+.|++||+++++.+..+. +|...|+++
T Consensus 137 l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l 212 (321)
T 3ow8_A 137 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLE---GHAMPIRSL 212 (321)
T ss_dssp EEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCCCEE
T ss_pred EEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEc---ccCCceeEE
Confidence 99999999999999999999999999999999999999 89999999999999999999999999988 799999999
Q ss_pred EecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEee
Q 019117 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV 258 (346)
Q Consensus 181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~ 258 (346)
+|+| ++.+|++++.|+.|++||++. ......+..|...|.+++|+ +.+|++++.
T Consensus 213 ~~sp-d~~~l~s~s~dg~i~iwd~~~-----------------------~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 268 (321)
T 3ow8_A 213 TFSP-DSQLLVTASDDGYIKIYDVQH-----------------------ANLAGTLSGHASWVLNVAFCPDDTHFVSSSS 268 (321)
T ss_dssp EECT-TSCEEEEECTTSCEEEEETTT-----------------------CCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEcC-CCCEEEEEcCCCeEEEEECCC-----------------------cceeEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence 9999 899999999999999999987 33456788899999999998 789999999
Q ss_pred cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117 259 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (346)
Q Consensus 259 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~ 321 (346)
|++|++||+.+++ ++..+..|...|.+++|+|++ .+|++++.||.|++||+.
T Consensus 269 D~~v~iwd~~~~~---------~~~~~~~h~~~v~~v~~s~~g--~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 269 DKSVKVWDVGTRT---------CVHTFFDHQDQVWGVKYNGNG--SKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TSCEEEEETTTTE---------EEEEECCCSSCEEEEEECTTS--SEEEEEETTCCEEEEECC
T ss_pred CCcEEEEeCCCCE---------EEEEEcCCCCcEEEEEECCCC--CEEEEEeCCCeEEEEeCC
Confidence 9999999999876 778888999999999999999 789999999999999963
No 12
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.8e-44 Score=296.26 Aligned_cols=288 Identities=17% Similarity=0.244 Sum_probs=230.6
Q ss_pred cceeeeeecccCCC-ceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117 21 REYRVTNKLQEGKR-PLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI 98 (346)
Q Consensus 21 ~~~~~~~~~~~h~~-~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (346)
..+.++.++++|.+ .|++++|+| ++++||+|+.|+ |+||+...+....... ....|...|.+++|+ |+++
T Consensus 3 ~~~~~~~~~~~h~~~~v~~l~~sp----~g~~las~~~D~~i~iw~~~~~~~~~~~~--~~~~h~~~v~~~~~s--p~g~ 74 (345)
T 3fm0_A 3 DSLVLLGRVPAHPDSRCWFLAWNP----AGTLLASCGGDRRIRIWGTEGDSWICKSV--LSEGHQRTVRKVAWS--PCGN 74 (345)
T ss_dssp -CEEEEEEECCSTTSCEEEEEECT----TSSCEEEEETTSCEEEEEEETTEEEEEEE--ECSSCSSCEEEEEEC--TTSS
T ss_pred ccEEEeeeecCCCCCcEEEEEECC----CCCEEEEEcCCCeEEEEEcCCCcceeeee--eccccCCcEEEEEEC--CCCC
Confidence 35678888999988 999999999 789999999998 9999988765432221 123578889888887 8998
Q ss_pred cEEEEeecCCeEEEEEccCc--ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee---EEEecccCCC
Q 019117 99 PFLVAGGINGIIRVIDVSNE--KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC---ILIFAGAGGH 173 (346)
Q Consensus 99 ~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~ 173 (346)
+|++|+.|+.+++||+.++ +.+..+.+|...|.+++|+| ++++|++|+.|++|++||++++.. +..+. +|
T Consensus 75 -~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~---~h 149 (345)
T 3fm0_A 75 -YLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLN---SH 149 (345)
T ss_dssp -EEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEEC---CC
T ss_pred -EEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEec---Cc
Confidence 9999999999999998876 45778899999999999999 899999999999999999987643 44454 79
Q ss_pred CcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CC
Q 019117 174 RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD 251 (346)
Q Consensus 174 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~ 251 (346)
...|.+++|+| ++.+|++++.|+.|++||++... ......+..|...|.+++|+ ++
T Consensus 150 ~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~---------------------~~~~~~~~~h~~~v~~l~~sp~g~ 207 (345)
T 3fm0_A 150 TQDVKHVVWHP-SQELLASASYDDTVKLYREEEDD---------------------WVCCATLEGHESTVWSLAFDPSGQ 207 (345)
T ss_dssp CSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTE---------------------EEEEEEECCCSSCEEEEEECTTSS
T ss_pred CCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCC---------------------EEEEEEecCCCCceEEEEECCCCC
Confidence 99999999999 88999999999999999988622 12345778899999999998 88
Q ss_pred EEEEEeecCeEEEEcCCCCCCCCCC------ccccccccccC-CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 252 FILSKSVDNEIVLWEPKMKEQSPGE------GTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 252 ~l~~~~~d~~i~iwd~~~~~~~~~~------~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
+|++++.|++|++||.......... ....++..+.+ |...|.+++|+|++ ..|++++.|+.|++|+...+.
T Consensus 208 ~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~--~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 208 RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT--GALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTT--CCEEEEETTSCEEEEEECTTS
T ss_pred EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCC--CEEEEEeCCCeEEEEEeCCCC
Confidence 9999999999999997543211100 01112333444 77899999999999 689999999999999987653
Q ss_pred c----ceee------eeeeeEEEEEecCCCC
Q 019117 325 P----VLIA------RLICFSLHVKYNPQSV 345 (346)
Q Consensus 325 ~----~~~~------~~~~~~~~~~~spdg~ 345 (346)
. .... .+...+++++|+|+++
T Consensus 286 ~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~ 316 (345)
T 3fm0_A 286 DPQQPTFSLTAHLHQAHSQDVNCVAWNPKEP 316 (345)
T ss_dssp CTTSCCEEEEEEETTSSSSCEEEEEECSSST
T ss_pred CcceeeEEEEeeecccccCcEeEeEEeCCCc
Confidence 1 1111 1234589999999874
No 13
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.5e-43 Score=290.53 Aligned_cols=276 Identities=22% Similarity=0.390 Sum_probs=233.6
Q ss_pred ccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117 20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI 98 (346)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (346)
.+.+.+..++.+|.++|++++|+| ++++||+++.|+ |++|+..+++....+.. |...|.+++|. |+++
T Consensus 10 ~~~~~~~~~~~gh~~~v~~~~~s~----~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-----h~~~v~~~~~~--~~~~ 78 (312)
T 4ery_A 10 KPNYALKFTLAGHTKAVSSVKFSP----NGEWLASSSADKLIKIWGAYDGKFEKTISG-----HKLGISDVAWS--SDSN 78 (312)
T ss_dssp CCCCEEEEEECCCSSCEEEEEECT----TSSEEEEEETTSCEEEEETTTCCEEEEECC-----CSSCEEEEEEC--TTSS
T ss_pred CCCceeEEEEcccCCcEEEEEECC----CCCEEEEeeCCCeEEEEeCCCcccchhhcc-----CCCceEEEEEc--CCCC
Confidence 345777888999999999999999 789999999998 99999988887666653 67788888876 8998
Q ss_pred cEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceE
Q 019117 99 PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 178 (346)
Q Consensus 99 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 178 (346)
+|++++.|+.|++||+.+++.+..+.+|...|.+++|+| ++++|++|+.|+.|++||+++++.+..+. .|...|.
T Consensus 79 -~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~v~ 153 (312)
T 4ery_A 79 -LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP---AHSDPVS 153 (312)
T ss_dssp -EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEE
T ss_pred -EEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEec---CCCCcEE
Confidence 999999999999999999999999999999999999999 88999999999999999999999998888 7999999
Q ss_pred EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE-eecccceEEEEec--CCEEEE
Q 019117 179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SVHSNYVDCNRWL--GDFILS 255 (346)
Q Consensus 179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~~l~~ 255 (346)
+++|+| ++.++++++.|+.|++||++..+ .+..+ ..+...+.+++|+ +++|++
T Consensus 154 ~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~ 209 (312)
T 4ery_A 154 AVHFNR-DGSLIVSSSYDGLCRIWDTASGQ-----------------------CLKTLIDDDNPPVSFVKFSPNGKYILA 209 (312)
T ss_dssp EEEECT-TSSEEEEEETTSCEEEEETTTCC-----------------------EEEEECCSSCCCEEEEEECTTSSEEEE
T ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCc-----------------------eeeEEeccCCCceEEEEECCCCCEEEE
Confidence 999999 89999999999999999998732 22222 3456678889998 789999
Q ss_pred EeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeE--EEEe-ecCCcceEEEEcCCCcEEEEEcCCCCcceeee-e
Q 019117 256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWF--IKFS-CDFHYNAAAIGNREGKIFVWELQSSPPVLIAR-L 331 (346)
Q Consensus 256 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~s-~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~ 331 (346)
++.|+.|++||+++++ .+..+.+|...+.. ..++ +++ .+|++|+.||.|++||+.+++.+..+. +
T Consensus 210 ~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~--~~l~sg~~dg~i~vwd~~~~~~~~~~~~h 278 (312)
T 4ery_A 210 ATLDNTLKLWDYSKGK---------CLKTYTGHKNEKYCIFANFSVTGG--KWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278 (312)
T ss_dssp EETTTEEEEEETTTTE---------EEEEECSSCCSSSCCCEEEECSSS--CEEEECCTTSCEEEEETTTCCEEEEECCC
T ss_pred EcCCCeEEEEECCCCc---------EEEEEEecCCceEEEEEEEEeCCC--cEEEEECCCCEEEEEECCCchhhhhhhcc
Confidence 9999999999999876 55666666544322 3444 444 689999999999999999988665443 4
Q ss_pred eeeEEEEEecCCCCC
Q 019117 332 ICFSLHVKYNPQSVY 346 (346)
Q Consensus 332 ~~~~~~~~~spdg~~ 346 (346)
...+.+++|+|++++
T Consensus 279 ~~~v~~~~~~p~~~~ 293 (312)
T 4ery_A 279 TDVVISTACHPTENI 293 (312)
T ss_dssp SSCEEEEEECSSSSE
T ss_pred CCcEEEEeecCcCCc
Confidence 455889999999863
No 14
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.8e-44 Score=303.91 Aligned_cols=249 Identities=21% Similarity=0.346 Sum_probs=224.1
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (346)
.+....+.+|.+.|++++|+| ++++|++|+.|+ |++||+.+++.+..+.. |...|.+++|. |++. +|
T Consensus 140 ~~~~~~l~~h~~~V~~v~~~~----~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~-----h~~~V~~v~~~--p~~~-~l 207 (410)
T 1vyh_C 140 GDFERTLKGHTDSVQDISFDH----SGKLLASCSADMTIKLWDFQGFECIRTMHG-----HDHNVSSVSIM--PNGD-HI 207 (410)
T ss_dssp CCCCEEECCCSSCEEEEEECT----TSSEEEEEETTSCCCEEETTSSCEEECCCC-----CSSCEEEEEEC--SSSS-EE
T ss_pred CcEEEEEeccCCcEEEEEEcC----CCCEEEEEeCCCeEEEEeCCCCceeEEEcC-----CCCCEEEEEEe--CCCC-EE
Confidence 345667899999999999999 789999999998 99999988877666653 77788888776 8888 99
Q ss_pred EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117 102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 181 (346)
Q Consensus 102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 181 (346)
++|+.|++|++||+.+++.+..+.+|...|.++.++| ++.+|++|+.|++|++||+++++....+. +|...|.+++
T Consensus 208 ~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~---~h~~~v~~~~ 283 (410)
T 1vyh_C 208 VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELR---EHRHVVECIS 283 (410)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeEec---CCCceEEEEE
Confidence 9999999999999999999999999999999999999 89999999999999999999999998888 7999999999
Q ss_pred ecCCC-------------------CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccc
Q 019117 182 FHPSD-------------------IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 242 (346)
Q Consensus 182 ~~~~~-------------------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (346)
|+|+. +.+|++|+.|+.|++||+++ ...+..+.+|...
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~-----------------------~~~~~~~~~h~~~ 340 (410)
T 1vyh_C 284 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-----------------------GMCLMTLVGHDNW 340 (410)
T ss_dssp ECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT-----------------------TEEEEEEECCSSC
T ss_pred EcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC-----------------------CceEEEEECCCCc
Confidence 99832 56899999999999999988 4467778899999
Q ss_pred eEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117 243 VDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 320 (346)
Q Consensus 243 i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~ 320 (346)
|.++.|+ +++|++++.|++|++||+.+++ .+..+.+|...|++++|+|++ .+|++|+.||.|++|++
T Consensus 341 v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~---------~~~~~~~h~~~v~~l~~~~~~--~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 341 VRGVLFHSGGKFILSCADDKTLRVWDYKNKR---------CMKTLNAHEHFVTSLDFHKTA--PYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEEEECSSSSCEEEEETTTEEEEECCTTSC---------CCEEEECCSSCEEEEEECSSS--SCEEEEETTSEEEEEC-
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------eEEEEcCCCCcEEEEEEcCCC--CEEEEEeCCCcEEEEeC
Confidence 9999998 7899999999999999998776 677888999999999999999 78999999999999986
Q ss_pred C
Q 019117 321 Q 321 (346)
Q Consensus 321 ~ 321 (346)
+
T Consensus 410 r 410 (410)
T 1vyh_C 410 R 410 (410)
T ss_dssp -
T ss_pred C
Confidence 3
No 15
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.3e-42 Score=288.43 Aligned_cols=282 Identities=16% Similarity=0.244 Sum_probs=222.4
Q ss_pred cceeeeeecccCCCceEEEEEEee--cCCCccEEEEEcCCc-EEEEEeccCcee----eeEeeeecCCCccceEEEEEEE
Q 019117 21 REYRVTNKLQEGKRPLYAVVFNFI--DSRYFNVFATVGGNR-VTVYQCLEGGVI----AALQSYVDEDKEESFYTVSWAC 93 (346)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~~p~--~~~~~~~la~~~~~~-v~i~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~ 93 (346)
..+++...|++|.+.|++++|.+. .+.++.+||+|+.|+ |++||+.+.+.. ..... ...|...|.+++|+
T Consensus 9 ~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~--l~~h~~~V~~~~~~- 85 (343)
T 2xzm_R 9 IQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKA--LTGHNHFVSDLALS- 85 (343)
T ss_dssp EEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEE--ECCCSSCEEEEEEC-
T ss_pred eEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccch--hccCCCceEEEEEC-
Confidence 456677889999999999999321 112678999999998 999998754321 11111 13478889888876
Q ss_pred cCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCC
Q 019117 94 NVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGH 173 (346)
Q Consensus 94 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 173 (346)
|++. ++++|+.|++|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.|++|++||+.. +.........+|
T Consensus 86 -~~~~-~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~ 161 (343)
T 2xzm_R 86 -QENC-FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILG-ECKFSSAEKENH 161 (343)
T ss_dssp -SSTT-EEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS-STTEEEEEETTSCEEEEESSS-CEEEECCTTTSC
T ss_pred -CCCC-EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccC-CceeeeecccCC
Confidence 8898 999999999999999999999999999999999999999 889999999999999999984 434344333368
Q ss_pred CcceEEEEecCCCC----------cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce
Q 019117 174 RNEVLSVDFHPSDI----------YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV 243 (346)
Q Consensus 174 ~~~v~~~~~~~~~~----------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 243 (346)
...|.+++|+| ++ .++++++.|+.|++||... .....+..|...|
T Consensus 162 ~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~------------------------~~~~~~~~h~~~v 216 (343)
T 2xzm_R 162 SDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTNF------------------------QIRYTFKAHESNV 216 (343)
T ss_dssp SSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETTT------------------------EEEEEEECCSSCE
T ss_pred Cceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCCC------------------------ceeEEEcCccccc
Confidence 89999999998 54 6899999999999999543 2345678899999
Q ss_pred EEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117 244 DCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (346)
Q Consensus 244 ~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~ 321 (346)
.+++|+ +++|++++.|+.|++||+..... ....+ .+...|.+++|+|++ .+++ ++.|+.|++||+.
T Consensus 217 ~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~--------~~~~~-~~~~~v~~v~~sp~~--~~la-~~~d~~v~iw~~~ 284 (343)
T 2xzm_R 217 NHLSISPNGKYIATGGKDKKLLIWDILNLTY--------PQREF-DAGSTINQIAFNPKL--QWVA-VGTDQGVKIFNLM 284 (343)
T ss_dssp EEEEECTTSSEEEEEETTCEEEEEESSCCSS--------CSEEE-ECSSCEEEEEECSSS--CEEE-EEESSCEEEEESS
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEECCCCcc--------cceee-cCCCcEEEEEECCCC--CEEE-EECCCCEEEEEeC
Confidence 999998 78999999999999999954331 22222 234579999999998 5665 4568889999999
Q ss_pred CCCcceeee--------------eeeeEEEEEecCCCCC
Q 019117 322 SSPPVLIAR--------------LICFSLHVKYNPQSVY 346 (346)
Q Consensus 322 ~~~~~~~~~--------------~~~~~~~~~~spdg~~ 346 (346)
+++...... +...+.+++|+|+|++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 323 (343)
T 2xzm_R 285 TQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKK 323 (343)
T ss_dssp SCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCC
T ss_pred CCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCe
Confidence 877554222 2344789999999975
No 16
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.9e-43 Score=296.30 Aligned_cols=321 Identities=39% Similarity=0.716 Sum_probs=248.2
Q ss_pred ceeeeeec-ccCCCceEEEEEEeecC-CCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCC--C
Q 019117 22 EYRVTNKL-QEGKRPLYAVVFNFIDS-RYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD--G 97 (346)
Q Consensus 22 ~~~~~~~~-~~h~~~v~~~~~~p~~~-~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~ 97 (346)
.|+....+ .+|.++|++++|+|..+ .+..++++++.+.|++|++.+++.+..+..+....+...|.+++|+++.. +
T Consensus 6 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 85 (366)
T 3k26_A 6 SFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSH 85 (366)
T ss_dssp CCEEEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCC
T ss_pred EEEEEEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCC
Confidence 34444344 68999999999998311 12346777767779999999999988888887777888999999984432 6
Q ss_pred CcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcce
Q 019117 98 IPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV 177 (346)
Q Consensus 98 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 177 (346)
. +|++|+.||.|++||+.+++.+..+.+|...|.+++|+|.++.+|++++.||.|++||+++++.+..+....+|...|
T Consensus 86 ~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 164 (366)
T 3k26_A 86 P-LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV 164 (366)
T ss_dssp E-EEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCE
T ss_pred C-EEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCce
Confidence 6 999999999999999999999999999999999999999778899999999999999999999998884333799999
Q ss_pred EEEEecCCCCcEEEEEecCCeEEEEEccccceeeeec--eeecCCCCC--CCC-ccceeceEEEeecccceEEEEecCCE
Q 019117 178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKS--FTWTDLPSK--FPT-KYVQFPVFIASVHSNYVDCNRWLGDF 252 (346)
Q Consensus 178 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~ 252 (346)
.+++|+| ++.+|++++.||.|++||++..+...... ..+...... ... ............|...|.++.|++++
T Consensus 165 ~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 243 (366)
T 3k26_A 165 LSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDL 243 (366)
T ss_dssp EEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTE
T ss_pred eEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCE
Confidence 9999999 89999999999999999998743211110 000000000 000 00011233445599999999999999
Q ss_pred EEEEeecCeEEEEcCCCCCCCC-----CCccccccccccCCCcCeeEEEEeec--CCcceEEEEcCCCcEEEEEcCCCCc
Q 019117 253 ILSKSVDNEIVLWEPKMKEQSP-----GEGTADILQKYPVPECDIWFIKFSCD--FHYNAAAIGNREGKIFVWELQSSPP 325 (346)
Q Consensus 253 l~~~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~~~l~~~~~dg~i~iwd~~~~~~ 325 (346)
+++++.|+.|++||+.+.+... .......+..+..|...|.+++|+|+ + .+|++++.||.|++||+.++++
T Consensus 244 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--~~l~~~~~dg~i~vwd~~~~~~ 321 (366)
T 3k26_A 244 ILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ--KMLALGNQVGKLYVWDLEVEDP 321 (366)
T ss_dssp EEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS--SEEEEECTTSCEEEEECCSSSG
T ss_pred EEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC--cEEEEEecCCcEEEEECCCCCC
Confidence 9999999999999998765311 11112346677788889999999999 7 7999999999999999999875
Q ss_pred ce----eeee---eeeEEEEEecCCCCC
Q 019117 326 VL----IARL---ICFSLHVKYNPQSVY 346 (346)
Q Consensus 326 ~~----~~~~---~~~~~~~~~spdg~~ 346 (346)
.. .... ...+.+++|+|+|++
T Consensus 322 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 349 (366)
T 3k26_A 322 HKAKCTTLTHHKCGAAIRQTSFSRDSSI 349 (366)
T ss_dssp GGCEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred ccccceEEcccccCCceEEEEeCCCCCe
Confidence 43 2222 356899999999874
No 17
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-42 Score=286.11 Aligned_cols=285 Identities=17% Similarity=0.212 Sum_probs=216.9
Q ss_pred ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (346)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (346)
.+++...+.+|.++|++++|+| .+||+++.|+ |++|++..+.. ..+..+....|...|.+++|+ |+++ +
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~------~~las~~~D~~i~lw~~~~~~~-~~~~~~~~~~h~~~v~~v~~s--p~~~-~ 72 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQ------GILATGSTDRKIKLVSVKYDDF-TLIDVLDETAHKKAIRSVAWR--PHTS-L 72 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEET------TEEEEEESSSCEEEEECSSSCC-EEEEEECTTCCCSCEEEEEEC--TTSS-E
T ss_pred ccccceeeccCCCceeeeccCC------CEEEEEcCCCEEEEEEecCCCe-EEEEEEecCCccCCEEEEEEC--CCCC-E
Confidence 3567788999999999999998 3999999998 99999876532 112222122378889888887 8898 9
Q ss_pred EEEeecCCeEEEEEccC-------cceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC----eeEEEecc
Q 019117 101 LVAGGINGIIRVIDVSN-------EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG----ICILIFAG 169 (346)
Q Consensus 101 l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~ 169 (346)
|++|+.|++|++||+.. .+.+..+.+|...|.+++|+| ++++|++|+.|++|++||++.. +++..+.
T Consensus 73 las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~- 150 (330)
T 2hes_X 73 LAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQ- 150 (330)
T ss_dssp EEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC-
T ss_pred EEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec-
Confidence 99999999999999853 345677889999999999999 8999999999999999999532 4556666
Q ss_pred cCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec
Q 019117 170 AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL 249 (346)
Q Consensus 170 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 249 (346)
+|...|.+++|+| ++.+|++++.|++|++||+.... ..++..+.+|...|.++.|+
T Consensus 151 --~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~---------------------~~~~~~~~~h~~~v~~~~~~ 206 (330)
T 2hes_X 151 --EHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDD---------------------WECVAVLNGHEGTVWSSDFD 206 (330)
T ss_dssp --CCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTE---------------------EEEEEEECCCSSCEEEEEEC
T ss_pred --cCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCC---------------------eeEEEEccCCCCcEEEEEec
Confidence 7999999999999 89999999999999999987621 13566788999999999998
Q ss_pred C----CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccC-CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 250 G----DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 250 ~----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
+ .+|++++.|++|++||+........ ........+.. |...|.+++|++++ +|++++.||.|++||..+++
T Consensus 207 ~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~v~~s~~~---~l~s~~~dg~v~iw~~~~~~ 282 (330)
T 2hes_X 207 KTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ-QEWVCEAILPDVHKRQVYNVAWGFNG---LIASVGADGVLAVYEEVDGE 282 (330)
T ss_dssp CSSSSCEEEEEETTSCEEEEEEEEECTTSC-EEEEEEEECCSCCSSCEEEEEECTTS---CEEEEETTSCEEEEEEETTE
T ss_pred CCCCeeEEEEEeCCCeEEEEEecCCCcccc-ceeEEeeecccccccceEEEEEcCCC---EEEEEeCCCEEEEEEcCCCc
Confidence 3 4899999999999999976532110 01113344444 78899999999664 79999999999999998774
Q ss_pred cceee----eeee-eEEEEEecC--CCCC
Q 019117 325 PVLIA----RLIC-FSLHVKYNP--QSVY 346 (346)
Q Consensus 325 ~~~~~----~~~~-~~~~~~~sp--dg~~ 346 (346)
..... .+.. .+.+++|+| ++++
T Consensus 283 ~~~~~~~~~~h~~~~v~~v~~~~~~~~~~ 311 (330)
T 2hes_X 283 WKVFAKRALCHGVYEINVVKWLELNGKTI 311 (330)
T ss_dssp EEEEEEESCTTTTSCEEEEEEC-----CC
T ss_pred eEEEeccccccccceEEEEEEecCCCceE
Confidence 22211 1223 588999999 5653
No 18
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.5e-42 Score=291.96 Aligned_cols=283 Identities=21% Similarity=0.326 Sum_probs=223.9
Q ss_pred cCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecC-------------CCccceEEEEEEEcCCC
Q 019117 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDE-------------DKEESFYTVSWACNVDG 97 (346)
Q Consensus 31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~ 97 (346)
+|.+.|++++|+| +|++||+++++.+++|+..+++.+..+..+... .+...|.+++|+ |+|
T Consensus 62 ~h~~~V~~v~fsp----dg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~dg 135 (393)
T 1erj_A 62 DHTSVVCCVKFSN----DGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS--PDG 135 (393)
T ss_dssp ECSSCCCEEEECT----TSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC--TTS
T ss_pred CCCCEEEEEEECC----CCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEEC--CCC
Confidence 6999999999999 789999998777999999988877666533211 112236666665 999
Q ss_pred CcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcce
Q 019117 98 IPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV 177 (346)
Q Consensus 98 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 177 (346)
+ +|++|+.|+.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.|++|++||+++++....+. +...+
T Consensus 136 ~-~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~----~~~~v 209 (393)
T 1erj_A 136 K-FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLS----IEDGV 209 (393)
T ss_dssp S-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCE
T ss_pred C-EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCCCeeEEEEE----cCCCc
Confidence 9 999999999999999999999999999999999999999 88999999999999999999999888886 67789
Q ss_pred EEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEE
Q 019117 178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS 255 (346)
Q Consensus 178 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~ 255 (346)
.+++|+|.++.++++++.|+.|++||+++....... .........|...|.+++|+ +++|++
T Consensus 210 ~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~----------------~~~~~~~~~h~~~v~~v~~~~~g~~l~s 273 (393)
T 1erj_A 210 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL----------------DSENESGTGHKDSVYSVVFTRDGQSVVS 273 (393)
T ss_dssp EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE----------------C------CCCSSCEEEEEECTTSSEEEE
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEee----------------cccccCCCCCCCCEEEEEECCCCCEEEE
Confidence 999999877899999999999999999873321100 00111235789999999998 889999
Q ss_pred EeecCeEEEEcCCCCCCCCCC---ccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee-e
Q 019117 256 KSVDNEIVLWEPKMKEQSPGE---GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR-L 331 (346)
Q Consensus 256 ~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~ 331 (346)
++.|++|++||+++....... ........+.+|...|.+++|+|++ .+|++|+.|+.|++||+.+++++.... +
T Consensus 274 ~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~sgs~D~~v~iwd~~~~~~~~~l~~h 351 (393)
T 1erj_A 274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND--EYILSGSKDRGVLFWDKKSGNPLLMLQGH 351 (393)
T ss_dssp EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG--CEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCC--CEEEEEeCCCeEEEEECCCCeEEEEECCC
Confidence 999999999999875421110 1122445677899999999999999 799999999999999999998765443 4
Q ss_pred eeeEEEEEecCC
Q 019117 332 ICFSLHVKYNPQ 343 (346)
Q Consensus 332 ~~~~~~~~~spd 343 (346)
...+.+++|+|+
T Consensus 352 ~~~v~~v~~~~~ 363 (393)
T 1erj_A 352 RNSVISVAVANG 363 (393)
T ss_dssp SSCEEEEEECSS
T ss_pred CCCEEEEEecCC
Confidence 455889998874
No 19
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=7.2e-43 Score=291.12 Aligned_cols=255 Identities=17% Similarity=0.206 Sum_probs=205.4
Q ss_pred eeecccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117 26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (346)
Q Consensus 26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 105 (346)
.....+|...|++++|+| ++.+++++.++.|+|||+.+++...... +....|...|.+++|+ |+++ +|++|+
T Consensus 87 ~~~~~~~~~~V~~~~~s~----d~~~l~~s~dg~v~lWd~~~~~~~~~~~-~~~~~h~~~V~~v~~s--pdg~-~l~sgs 158 (357)
T 4g56_B 87 CTAGVQTEAGVTDVAWVS----EKGILVASDSGAVELWEILEKESLLVNK-FAKYEHDDIVKTLSVF--SDGT-QAVSGG 158 (357)
T ss_dssp CSEEEECSSCEEEEEEET----TTEEEEEETTSCEEEC--------CCCC-EEECCCSSCEEEEEEC--SSSS-EEEEEE
T ss_pred ecccCCCCCCEEEEEEcC----CCCEEEEECCCEEEEeeccccceeEEEe-eccCCCCCCEEEEEEC--CCCC-EEEEEe
Confidence 334467999999999999 5666665544449999998876544322 2223478889888876 9998 999999
Q ss_pred cCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCC
Q 019117 106 INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS 185 (346)
Q Consensus 106 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 185 (346)
.|+.|++||+.+++.+..+.+|...|.+++|+|++..++++++.|++|++||+++++.+..+... .+...+.+++|+|+
T Consensus 159 ~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~-~~~~~v~~v~~sp~ 237 (357)
T 4g56_B 159 KDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC-ASDTIPTSVTWHPE 237 (357)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT-TCCSCEEEEEECTT
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec-cccccccchhhhhc
Confidence 99999999999999999999999999999999955568999999999999999998877665421 46778999999996
Q ss_pred CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--C-CEEEEEeecCeE
Q 019117 186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--G-DFILSKSVDNEI 262 (346)
Q Consensus 186 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i 262 (346)
++.+|++|+.|+.|++||+++ ...+..+..|...|++++|+ + ++|++++.|++|
T Consensus 238 ~~~~la~g~~d~~i~~wd~~~-----------------------~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i 294 (357)
T 4g56_B 238 KDDTFACGDETGNVSLVNIKN-----------------------PDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTV 294 (357)
T ss_dssp STTEEEEEESSSCEEEEESSC-----------------------GGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred ccceEEEeecccceeEEECCC-----------------------CcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEE
Confidence 678999999999999999988 34567788899999999998 3 589999999999
Q ss_pred EEEcCCCCCCCCCCccccccccccCCCcCeeEEEEee-cCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 263 VLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC-DFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 263 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
+|||+++++ .+. ..+|...|++++|+| ++ .+|++++.||.|++|++.+..
T Consensus 295 ~iwd~~~~~---------~~~-~~~H~~~V~~vafsP~d~--~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 295 AVLDADFSE---------VFR-DLSHRDFVTGVAWSPLDH--SKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp EEECTTSCE---------EEE-ECCCSSCEEEEEECSSST--TEEEEEETTSCEEEEECC---
T ss_pred EEEECCCCc---------EeE-ECCCCCCEEEEEEeCCCC--CEEEEEcCCCeEEEEECCCCC
Confidence 999998875 333 347889999999998 66 689999999999999997643
No 20
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.6e-41 Score=280.28 Aligned_cols=248 Identities=16% Similarity=0.241 Sum_probs=213.1
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCcee-eeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI-AALQSYVDEDKEESFYTVSWACNVDGIPF 100 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (346)
.+....+..|...|.+++|+| ++.+|++++.|+ |++|++.+.... .....+ ..|...+.++.|. +++ .
T Consensus 87 ~~~~~~~~~~~~~v~~~~~s~----~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~--~~h~~~v~~~~~~--~~~--~ 156 (340)
T 1got_B 87 TNKVHAIPLRSSWVMTCAYAP----SGNYVACGGLDNICSIYNLKTREGNVRVSREL--AGHTGYLSCCRFL--DDN--Q 156 (340)
T ss_dssp CCEEEEEECSSSCEEEEEECT----TSSEEEEEETTCEEEEEETTTCSBSCEEEEEE--ECCSSCEEEEEEE--ETT--E
T ss_pred CCcceEeecCCccEEEEEECC----CCCEEEEEeCCCeEEEEECccCCCcceeEEEe--cCCCccEEEEEEC--CCC--c
Confidence 345566788999999999999 789999999998 999998765422 122222 2377888888886 666 5
Q ss_pred EEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180 (346)
Q Consensus 101 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 180 (346)
+++++.|+.|++||+.+++.+..+.+|.+.|.+++|+| ++.+|++|+.|++|++||+++++.+..+. +|...|+++
T Consensus 157 l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~---~h~~~v~~v 232 (340)
T 1got_B 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFT---GHESDINAI 232 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEEC---CCSSCEEEE
T ss_pred EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCeeEEEEc---CCcCCEEEE
Confidence 88999999999999999999999999999999999999 88999999999999999999999999988 799999999
Q ss_pred EecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe--ecccceEEEEec--CCEEEEE
Q 019117 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS--VHSNYVDCNRWL--GDFILSK 256 (346)
Q Consensus 181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~--~~~l~~~ 256 (346)
+|+| ++.+|++++.|++|++||++..+ .+..+. .+...|.+++|+ +++|++|
T Consensus 233 ~~~p-~~~~l~s~s~d~~v~iwd~~~~~-----------------------~~~~~~~~~~~~~v~~~~~s~~g~~l~~g 288 (340)
T 1got_B 233 CFFP-NGNAFATGSDDATCRLFDLRADQ-----------------------ELMTYSHDNIICGITSVSFSKSGRLLLAG 288 (340)
T ss_dssp EECT-TSSEEEEEETTSCEEEEETTTTE-----------------------EEEEECCTTCCSCEEEEEECTTSSEEEEE
T ss_pred EEcC-CCCEEEEEcCCCcEEEEECCCCc-----------------------EEEEEccCCcccceEEEEECCCCCEEEEE
Confidence 9999 89999999999999999998732 222222 223468999998 8899999
Q ss_pred eecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117 257 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (346)
Q Consensus 257 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd 319 (346)
+.|+.|++||+.+.+ .+..+.+|...|.+++|+|++ .+|++|+.||.|++||
T Consensus 289 ~~d~~i~vwd~~~~~---------~~~~~~~h~~~v~~~~~s~dg--~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 289 YDDFNCNVWDALKAD---------RAGVLAGHDNRVSCLGVTDDG--MAVATGSWDSFLKIWN 340 (340)
T ss_dssp ETTSEEEEEETTTCC---------EEEEEECCSSCEEEEEECTTS--SCEEEEETTSCEEEEC
T ss_pred CCCCeEEEEEcccCc---------EeeEeecCCCcEEEEEEcCCC--CEEEEEcCCccEEecC
Confidence 999999999998776 677788999999999999999 7899999999999997
No 21
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.5e-41 Score=301.38 Aligned_cols=282 Identities=17% Similarity=0.316 Sum_probs=223.9
Q ss_pred ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEee--eecCCCccceEEEEEEEcCCCC
Q 019117 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQS--YVDEDKEESFYTVSWACNVDGI 98 (346)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~ 98 (346)
..++...+.+|.+.|++++|+| ++++||+++.|+ |++||..+++....+.. .....|...|.+++|+ |+|+
T Consensus 179 ~~~~~~~l~~H~~~V~~v~fsp----dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s--pdg~ 252 (611)
T 1nr0_A 179 PFKFKSTFGEHTKFVHSVRYNP----DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS--PDGT 252 (611)
T ss_dssp TBEEEEEECCCSSCEEEEEECT----TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC--TTSS
T ss_pred CCeEeeeeccccCceEEEEECC----CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEEC--CCCC
Confidence 3566778899999999999999 789999999999 99999988887665531 0011478889888887 9998
Q ss_pred cEEEEeecCCeEEEEEccCcceee-------------------------------------------eeccCCCceEEEE
Q 019117 99 PFLVAGGINGIIRVIDVSNEKLHK-------------------------------------------SFVGHGDSINEIR 135 (346)
Q Consensus 99 ~~l~~~~~dg~i~iwd~~~~~~~~-------------------------------------------~~~~~~~~v~~~~ 135 (346)
+|++++.|++|++||+.+++.+. .+.+|...|.+++
T Consensus 253 -~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~ 331 (611)
T 1nr0_A 253 -KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALS 331 (611)
T ss_dssp -EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred -EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEE
Confidence 99999999999999998765443 3357899999999
Q ss_pred EeCCCCceEEEeeCCCCEEEEecCCCeeEEEeccc---------------------------------------------
Q 019117 136 TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA--------------------------------------------- 170 (346)
Q Consensus 136 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------------------------------------------- 170 (346)
|+| ++++|++++.|++|++||+.+++....+...
T Consensus 332 ~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~ 410 (611)
T 1nr0_A 332 SSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKL 410 (611)
T ss_dssp ECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEEC
T ss_pred EeC-CCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeec
Confidence 999 8999999999999999999876554332100
Q ss_pred -----------C-----------------------CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeecee
Q 019117 171 -----------G-----------------------GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFT 216 (346)
Q Consensus 171 -----------~-----------------------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 216 (346)
. .|...+.+++|+| ++.+|++|+.|++|++||+.....
T Consensus 411 ~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~------- 482 (611)
T 1nr0_A 411 SSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASV------- 482 (611)
T ss_dssp SSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEE-------
T ss_pred CCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCce-------
Confidence 0 0234567889998 889999999999999999876210
Q ss_pred ecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCC-CCCCCCCccccccc--cccCCCcC
Q 019117 217 WTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKM-KEQSPGEGTADILQ--KYPVPECD 291 (346)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~--~~~~~~~~ 291 (346)
..... ..|...|.+++|+ +++|++++.|++|++|++.+ ++ .+. .+..|...
T Consensus 483 --------------~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~---------~~~~~~~~~H~~~ 538 (611)
T 1nr0_A 483 --------------SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE---------LAHTNSWTFHTAK 538 (611)
T ss_dssp --------------EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE---------ESCCCCCCCCSSC
T ss_pred --------------eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCc---------eeeeeeeeecccc
Confidence 11223 6799999999999 88999999999999999986 33 222 23458899
Q ss_pred eeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce--ee-ee-eeeEEEEEecCCCC
Q 019117 292 IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL--IA-RL-ICFSLHVKYNPQSV 345 (346)
Q Consensus 292 v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~-~~-~~~~~~~~~spdg~ 345 (346)
|.+++|+||+ ++|++++.|+.|++||+.++.... .. .+ ...+.+++|+|||+
T Consensus 539 V~~v~fspdg--~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~ 594 (611)
T 1nr0_A 539 VACVSWSPDN--VRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT 594 (611)
T ss_dssp EEEEEECTTS--SEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE
T ss_pred eeEEEECCCC--CEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE
Confidence 9999999999 799999999999999998865322 22 23 45689999999985
No 22
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.5e-41 Score=273.95 Aligned_cols=254 Identities=19% Similarity=0.256 Sum_probs=217.8
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (346)
.+....+.+|..+|.+++|+| ++++|++|+.|+ |++||+.+++.+..+.. |...|.+++|. |+++ +|
T Consensus 45 ~~~~~~~~~~~~~v~~~~~~~----~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~-----h~~~v~~~~~~--~~~~-~l 112 (304)
T 2ynn_A 45 QVEVRSIQVTETPVRAGKFIA----RKNWIIVGSDDFRIRVFNYNTGEKVVDFEA-----HPDYIRSIAVH--PTKP-YV 112 (304)
T ss_dssp TEEEEEEECCSSCEEEEEEEG----GGTEEEEEETTSEEEEEETTTCCEEEEEEC-----CSSCEEEEEEC--SSSS-EE
T ss_pred CceeEEeeccCCcEEEEEEeC----CCCEEEEECCCCEEEEEECCCCcEEEEEeC-----CCCcEEEEEEc--CCCC-EE
Confidence 345667889999999999999 789999999998 99999999988777764 77888888876 8898 99
Q ss_pred EEeecCCeEEEEEccCc-ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117 102 VAGGINGIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180 (346)
Q Consensus 102 ~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 180 (346)
++|+.|++|++||+.++ .....+.+|...|.+++|+|.++..|++|+.|++|++||++++.....+.. +|...+..+
T Consensus 113 ~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~--~~~~~v~~~ 190 (304)
T 2ynn_A 113 LSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT--GQERGVNYV 190 (304)
T ss_dssp EEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEEC--CCTTCEEEE
T ss_pred EEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceecc--CCcCcEEEE
Confidence 99999999999999887 455778899999999999996678999999999999999988776666542 567889999
Q ss_pred EecCC-CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe
Q 019117 181 DFHPS-DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS 257 (346)
Q Consensus 181 ~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~ 257 (346)
.|+|. ++.+|++++.|++|++||+++ ...+..+..|...|.++.|+ +.+|++++
T Consensus 191 ~~~~~~~~~~l~s~s~D~~i~iWd~~~-----------------------~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s 247 (304)
T 2ynn_A 191 DYYPLPDKPYMITASDDLTIKIWDYQT-----------------------KSCVATLEGHMSNVSFAVFHPTLPIIISGS 247 (304)
T ss_dssp EECCSTTCCEEEEEETTSEEEEEETTT-----------------------TEEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEeCCC-----------------------CccceeeCCCCCCEEEEEECCCCCEEEEEc
Confidence 99862 567999999999999999998 45677888999999999998 67999999
Q ss_pred ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117 258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (346)
Q Consensus 258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (346)
.|++|++||+.+.+ .+..+..+...+++++|+|++...++++|+.|| +.+|++.+.
T Consensus 248 ~Dg~i~iWd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~~ 303 (304)
T 2ynn_A 248 EDGTLKIWNSSTYK---------VEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGND 303 (304)
T ss_dssp TTSCEEEEETTTCC---------EEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC--
T ss_pred CCCeEEEEECCCCc---------eeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEeccC
Confidence 99999999999877 677888888999999999998534677777665 778887653
No 23
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.4e-41 Score=303.00 Aligned_cols=280 Identities=19% Similarity=0.172 Sum_probs=226.2
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCcee--eeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI--AALQSYVDEDKEESFYTVSWACNVDGIP 99 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (346)
.+....+.+|.+.|++++|+| +|++||+|+.|+ |+|||+.+++.. ..+. .|...|.+++|+ |+|+
T Consensus 49 ~~~~~~~~~h~~~v~~~~~sp----dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~-----~~~~~v~~v~fs--~dg~- 116 (611)
T 1nr0_A 49 LTDTEIYTEHSHQTTVAKTSP----SGYYCASGDVHGNVRIWDTTQTTHILKTTIP-----VFSGPVKDISWD--SESK- 116 (611)
T ss_dssp SSCCEEECCCSSCEEEEEECT----TSSEEEEEETTSEEEEEESSSTTCCEEEEEE-----CSSSCEEEEEEC--TTSC-
T ss_pred cccCeEecCCCCceEEEEECC----CCcEEEEEeCCCCEEEeECCCCcceeeEeec-----ccCCceEEEEEC--CCCC-
Confidence 345567889999999999999 889999999998 999998755432 2232 367788888877 9998
Q ss_pred EEEEeecC----CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCc
Q 019117 100 FLVAGGIN----GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN 175 (346)
Q Consensus 100 ~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 175 (346)
+|++++.+ +.|++|| +++....+.+|...|.+++|+|++...|++|+.|++|++||..+++.+..+. +|..
T Consensus 117 ~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~---~H~~ 191 (611)
T 1nr0_A 117 RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG---EHTK 191 (611)
T ss_dssp EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC---CCSS
T ss_pred EEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec---cccC
Confidence 88888765 3677776 5667788899999999999999434479999999999999999999888888 8999
Q ss_pred ceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE-------eecccceEEEEe
Q 019117 176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-------SVHSNYVDCNRW 248 (346)
Q Consensus 176 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~ 248 (346)
.|++++|+| ++.+|++++.|++|++||+.+.+ ....+ ..|...|.+++|
T Consensus 192 ~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g~-----------------------~~~~~~~~~~~~~~h~~~V~~v~~ 247 (611)
T 1nr0_A 192 FVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGT-----------------------KTGVFEDDSLKNVAHSGSVFGLTW 247 (611)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEETTTCC-----------------------EEEECBCTTSSSCSSSSCEEEEEE
T ss_pred ceEEEEECC-CCCEEEEEECCCcEEEEECCCCc-----------------------EeeeeccccccccccCCCEEEEEE
Confidence 999999999 89999999999999999998732 22222 169999999999
Q ss_pred c--CCEEEEEeecCeEEEEcCCCCCCCCCCc----------------------------------cccccccccCCCcCe
Q 019117 249 L--GDFILSKSVDNEIVLWEPKMKEQSPGEG----------------------------------TADILQKYPVPECDI 292 (346)
Q Consensus 249 ~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~v 292 (346)
+ +++|++++.|++|++||+.+++...... .......+.+|...|
T Consensus 248 spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v 327 (611)
T 1nr0_A 248 SPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAI 327 (611)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCE
Confidence 8 7899999999999999998765311100 011234456789999
Q ss_pred eEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee--eeeeeEEEEEecCCCC
Q 019117 293 WFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA--RLICFSLHVKYNPQSV 345 (346)
Q Consensus 293 ~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~spdg~ 345 (346)
.+++|+|++ ++|++++.|+.|++||+.+++..... .+...+.+++|+|++.
T Consensus 328 ~~l~~spdg--~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 380 (611)
T 1nr0_A 328 TALSSSADG--KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 380 (611)
T ss_dssp EEEEECTTS--SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC
T ss_pred EEEEEeCCC--CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCc
Confidence 999999999 79999999999999999998754432 2445688899998764
No 24
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.5e-41 Score=278.79 Aligned_cols=273 Identities=18% Similarity=0.232 Sum_probs=209.8
Q ss_pred cccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCce--eeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV--IAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (346)
Q Consensus 29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 105 (346)
..+|...|++++|+| ++++||+++.|+ +++|+...+.. +..+. .|...|.+++|+ |+++ +|++|+
T Consensus 57 ~~~h~~~v~~~~~sp----~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~-----~h~~~v~~v~~s--p~~~-~l~s~s 124 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSP----CGNYLASASFDATTCIWKKNQDDFECVTTLE-----GHENEVKSVAWA--PSGN-LLATCS 124 (345)
T ss_dssp CSSCSSCEEEEEECT----TSSEEEEEETTSCEEEEEECCC-EEEEEEEC-----CCSSCEEEEEEC--TTSS-EEEEEE
T ss_pred ccccCCcEEEEEECC----CCCEEEEEECCCcEEEEEccCCCeEEEEEcc-----CCCCCceEEEEe--CCCC-EEEEEE
Confidence 378999999999999 789999999998 99999876542 23332 378889888887 8998 999999
Q ss_pred cCCeEEEEEccCcc---eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee--EEEecccCCCCcceEEE
Q 019117 106 INGIIRVIDVSNEK---LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC--ILIFAGAGGHRNEVLSV 180 (346)
Q Consensus 106 ~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~ 180 (346)
.|+.|++||+.++. .+..+.+|...|.+++|+| ++.+|++++.|++|++||++.++. ...+. +|...|+++
T Consensus 125 ~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~---~h~~~v~~l 200 (345)
T 3fm0_A 125 RDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLE---GHESTVWSL 200 (345)
T ss_dssp TTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEEC---CCSSCEEEE
T ss_pred CCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEec---CCCCceEEE
Confidence 99999999998763 4567788999999999999 889999999999999999987753 45566 799999999
Q ss_pred EecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee-cccceEEEEec--CCEEEEEe
Q 019117 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-HSNYVDCNRWL--GDFILSKS 257 (346)
Q Consensus 181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~--~~~l~~~~ 257 (346)
+|+| ++.+|++++.|++|++||........... ..........+..+.. |...|.+++|+ +..|++++
T Consensus 201 ~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~ 271 (345)
T 3fm0_A 201 AFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVA--------CSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATAC 271 (345)
T ss_dssp EECT-TSSEEEEEETTSCEEEEEEECTTCTTCCC--------CC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEE
T ss_pred EECC-CCCEEEEEeCCCeEEEeccccCCCCccce--------eeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEe
Confidence 9999 89999999999999999975422110000 0000011122334443 88899999998 78999999
Q ss_pred ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce
Q 019117 258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL 327 (346)
Q Consensus 258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 327 (346)
.|+.|++|+....................+|...|.+++|+|++. .+|++|+.||.|++|++.+++...
T Consensus 272 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~-~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 272 GDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEP-GLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp TTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSST-TEEEEEETTSCEEEEEECC-----
T ss_pred CCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCc-eEEEEcCCCCcEEEEEecCCCCcc
Confidence 999999999876542111111112233467899999999999874 489999999999999999877543
No 25
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.4e-40 Score=273.39 Aligned_cols=269 Identities=13% Similarity=0.221 Sum_probs=232.6
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCe
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI 109 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 109 (346)
.+|.+.|++++|+| ++++|++++++.|++|++.++.....+..+....+...+.+++|. |+++ +|++++.||.
T Consensus 48 ~~h~~~v~~~~~~~----~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~-~l~~~~~d~~ 120 (337)
T 1gxr_A 48 LNHGEVVCAVTISN----PTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL--PDGC-TLIVGGEAST 120 (337)
T ss_dssp ECCSSCCCEEEECS----SSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEEC--TTSS-EEEEEESSSE
T ss_pred ccCCCceEEEEEec----CCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEc--CCCC-EEEEEcCCCc
Confidence 47999999999999 789999999434999999887765555544444577889888877 8898 9999999999
Q ss_pred EEEEEccCcc--eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117 110 IRVIDVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI 187 (346)
Q Consensus 110 i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 187 (346)
|++||+.+++ ....+..|...|.+++|+| +++++++++.|+.|++||+++++.+..+. .|...|.+++|+| ++
T Consensus 121 i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~---~~~~~i~~~~~~~-~~ 195 (337)
T 1gxr_A 121 LSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQ---GHTDGASCIDISN-DG 195 (337)
T ss_dssp EEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEECT-TS
T ss_pred EEEEECCCCCcceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeee---cccCceEEEEECC-CC
Confidence 9999999887 5667888999999999999 88999999999999999999999999888 7999999999999 88
Q ss_pred cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEE
Q 019117 188 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLW 265 (346)
Q Consensus 188 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iw 265 (346)
.++++++.|+.|++||++..+ .+.. ..+...+.++.|+ ++++++++.|+.|++|
T Consensus 196 ~~l~~~~~dg~i~~~d~~~~~-----------------------~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~ 251 (337)
T 1gxr_A 196 TKLWTGGLDNTVRSWDLREGR-----------------------QLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVL 251 (337)
T ss_dssp SEEEEEETTSEEEEEETTTTE-----------------------EEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CEEEEEecCCcEEEEECCCCc-----------------------eEee-ecCCCceEEEEECCCCCEEEEEcCCCcEEEE
Confidence 999999999999999998832 2223 2467889999998 7899999999999999
Q ss_pred cCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCC
Q 019117 266 EPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSV 345 (346)
Q Consensus 266 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~ 345 (346)
|+.+.+ ...+..|...|.+++|+|++ ++|++++.||.|++||+.+++.+........+.+++|+|+|+
T Consensus 252 ~~~~~~----------~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 319 (337)
T 1gxr_A 252 HVNKPD----------KYQLHLHESCVLSLKFAYCG--KWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDK 319 (337)
T ss_dssp ETTSSC----------EEEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSC
T ss_pred ECCCCC----------eEEEcCCccceeEEEECCCC--CEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCC
Confidence 998765 23566788899999999999 789999999999999999998877666777899999999987
Q ss_pred C
Q 019117 346 Y 346 (346)
Q Consensus 346 ~ 346 (346)
+
T Consensus 320 ~ 320 (337)
T 1gxr_A 320 Y 320 (337)
T ss_dssp E
T ss_pred E
Confidence 4
No 26
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.2e-41 Score=304.58 Aligned_cols=281 Identities=20% Similarity=0.293 Sum_probs=226.5
Q ss_pred ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (346)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (346)
.+++...+++|.+.|++|+|+|. ++++|++|+.|+ |++|++.+..............|...|.+++|+ |+++ +
T Consensus 371 ~l~~~~~l~~H~~~V~~v~~~~~---~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~g~-~ 444 (694)
T 3dm0_A 371 GLVLKGTMRAHTDMVTAIATPID---NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS--SDGQ-F 444 (694)
T ss_dssp SSEEEEEEECCSSCEEEEECCTT---CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEEC--TTSS-E
T ss_pred ccchhhhcccCCceeEEEEecCC---CCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEEC--CCCC-E
Confidence 34556678999999999999982 357999999998 999998765432111111112478889888876 8998 9
Q ss_pred EEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180 (346)
Q Consensus 101 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 180 (346)
|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.|++|++||+.............+|...|.++
T Consensus 445 l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~ 523 (694)
T 3dm0_A 445 ALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCV 523 (694)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEE
T ss_pred EEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEE
Confidence 99999999999999999999999999999999999999 88999999999999999987655444443334688999999
Q ss_pred EecCCCC--cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEE
Q 019117 181 DFHPSDI--YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK 256 (346)
Q Consensus 181 ~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~ 256 (346)
+|+| ++ ..+++++.|++|++||++. ......+..|...|.+++|+ +++|+++
T Consensus 524 ~~~~-~~~~~~l~s~s~d~~v~vwd~~~-----------------------~~~~~~~~~h~~~v~~v~~spdg~~l~sg 579 (694)
T 3dm0_A 524 RFSP-NTLQPTIVSASWDKTVKVWNLSN-----------------------CKLRSTLAGHTGYVSTVAVSPDGSLCASG 579 (694)
T ss_dssp EECS-CSSSCEEEEEETTSCEEEEETTT-----------------------CCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEeC-CCCcceEEEEeCCCeEEEEECCC-----------------------CcEEEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence 9999 54 6899999999999999987 33456788899999999998 7899999
Q ss_pred eecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee----
Q 019117 257 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI---- 332 (346)
Q Consensus 257 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---- 332 (346)
+.|++|++||+.+++ .+..+.. ...|.+++|+|++ .+|++++ ++.|++||+.+++.+......
T Consensus 580 ~~Dg~i~iwd~~~~~---------~~~~~~~-~~~v~~~~~sp~~--~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~ 646 (694)
T 3dm0_A 580 GKDGVVLLWDLAEGK---------KLYSLEA-NSVIHALCFSPNR--YWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAE 646 (694)
T ss_dssp ETTSBCEEEETTTTE---------EEECCBC-SSCEEEEEECSSS--SEEEEEE-TTEEEEEETTTTEEEEEECCCCC--
T ss_pred eCCCeEEEEECCCCc---------eEEEecC-CCcEEEEEEcCCC--cEEEEEc-CCCEEEEECCCCCChhhhccccccc
Confidence 999999999999876 4444443 4579999999998 5666554 567999999998755433211
Q ss_pred ----------------eeEEEEEecCCCCC
Q 019117 333 ----------------CFSLHVKYNPQSVY 346 (346)
Q Consensus 333 ----------------~~~~~~~~spdg~~ 346 (346)
..+.+++|||||++
T Consensus 647 ~~~~~~~~~~~~~~~~~~~~~l~~spdg~~ 676 (694)
T 3dm0_A 647 AEKADNSGPAATKRKVIYCTSLNWSADGST 676 (694)
T ss_dssp --------------CCCCEEEEEECTTSSE
T ss_pred cccccccccccCCceeEEeeeEEEcCCCCE
Confidence 12578999999974
No 27
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.6e-41 Score=273.50 Aligned_cols=258 Identities=19% Similarity=0.295 Sum_probs=206.7
Q ss_pred eecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccC--ceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE
Q 019117 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG--GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (346)
Q Consensus 27 ~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 103 (346)
..+.+|.+.|++++|+| ++++||+|+.|+ |+||++... +.+..+. .|...|.+++|+...+++ +|++
T Consensus 3 ~~~~~h~~~V~~~~~s~----~g~~las~s~D~~v~iw~~~~~~~~~~~~l~-----gH~~~V~~v~~s~~~~g~-~l~s 72 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDY----YGKRMATCSSDKTIKIFEVEGETHKLIDTLT-----GHEGPVWRVDWAHPKFGT-ILAS 72 (297)
T ss_dssp EECCSCSSCEEEEEECT----TSSEEEEEETTSCEEEEEBCSSCBCCCEEEC-----CCSSCEEEEEECCGGGCS-EEEE
T ss_pred eeccCCcCceEEEEECC----CCCEEEEEeCCCEEEEEecCCCCcEEEEEEc-----cccCCeEEEEecCCCcCC-EEEE
Confidence 45689999999999999 789999999999 999998643 3444443 378899999887333477 9999
Q ss_pred eecCCeEEEEEccCcc--eeeeeccCCCceEEEEEeCCC-CceEEEeeCCCCEEEEecCCCee--EEEecccCCCCcceE
Q 019117 104 GGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLK-PSLVVSASKDESVRLWNVQTGIC--ILIFAGAGGHRNEVL 178 (346)
Q Consensus 104 ~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~v~ 178 (346)
|+.|++|++||+.+++ .+..+.+|...|.+++|+|+. +.+|++++.|++|++||++++.. ...+. +|...|.
T Consensus 73 ~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~---~h~~~v~ 149 (297)
T 2pm7_B 73 CSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID---AHAIGVN 149 (297)
T ss_dssp EETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEE---CCSSCEE
T ss_pred EcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeee---cccCccc
Confidence 9999999999998874 556778899999999999931 78999999999999999987632 33444 7999999
Q ss_pred EEEecCCC------------CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEE
Q 019117 179 SVDFHPSD------------IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN 246 (346)
Q Consensus 179 ~~~~~~~~------------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 246 (346)
+++|+|.. +.+|++|+.|++|++||++.... .......+.+|...|.++
T Consensus 150 ~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~-------------------~~~~~~~l~~H~~~V~~v 210 (297)
T 2pm7_B 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-------------------TYVLESTLEGHSDWVRDV 210 (297)
T ss_dssp EEEECCCC------------CCEEEEEETTSCEEEEEEETTTT-------------------EEEEEEEECCCSSCEEEE
T ss_pred eEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc-------------------eEEEEEEecCCCCceEEE
Confidence 99999831 46899999999999999987321 011345678899999999
Q ss_pred EecC-----CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117 247 RWLG-----DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (346)
Q Consensus 247 ~~~~-----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~ 321 (346)
+|++ .+|++++.|++|++||++...... ...+.....|...|.+++|+|++ .+|++++.||.|++|+..
T Consensus 211 ~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~g--~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 211 AWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPW----KKTLLKEEKFPDVLWRASWSLSG--NVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EECCCCSSSEEEEEEETTSCEEEEEESSTTSCC----EEEESSSSCCSSCEEEEEECSSS--CCEEEEETTSCEEEEEEC
T ss_pred EECCCCCCceEEEEEECCCcEEEEEeCCCCCcc----ceeeeecccCCCcEEEEEECCCC--CEEEEEcCCCcEEEEEEC
Confidence 9983 589999999999999997643100 00111124567889999999999 789999999999999986
Q ss_pred C
Q 019117 322 S 322 (346)
Q Consensus 322 ~ 322 (346)
.
T Consensus 285 ~ 285 (297)
T 2pm7_B 285 L 285 (297)
T ss_dssp T
T ss_pred C
Confidence 4
No 28
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.3e-40 Score=274.81 Aligned_cols=282 Identities=17% Similarity=0.236 Sum_probs=230.9
Q ss_pred ccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117 20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI 98 (346)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (346)
.+++.+..+|+||.+.|++|+|+|+ .+++||||+.|+ |+|||+.+.+............|...|.+++|+ |+++
T Consensus 25 ~~~~~l~~tL~GH~~~V~~v~~sp~---~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s--~dg~ 99 (340)
T 4aow_A 25 TEQMTLRGTLKGHNGWVTQIATTPQ---FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS--SDGQ 99 (340)
T ss_dssp -CEEEEEEEECCCSSCEEEEEECTT---CTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEEC--TTSS
T ss_pred CCceEEEEEECCccCCEEEEEEeCC---CCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEEC--CCCC
Confidence 4566778889999999999999992 358999999998 999999876644333322234578889888887 9999
Q ss_pred cEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceE
Q 019117 99 PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 178 (346)
Q Consensus 99 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 178 (346)
+|++++.|+.|++|+............+...+..+.+++ .+..|++++.|+.+++||+.......... .+|...+.
T Consensus 100 -~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~~~--~~~~~~v~ 175 (340)
T 4aow_A 100 -FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVS 175 (340)
T ss_dssp -EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECS--SSCSSCEE
T ss_pred -EEEEEcccccceEEeecccceeeeecCCCCceeEEEEee-cCccceeecCCCeEEEEEeCCCceEEEEe--ccccCccc
Confidence 999999999999999999988888888899999999999 88999999999999999998665443322 26899999
Q ss_pred EEEecCCC-CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEE
Q 019117 179 SVDFHPSD-IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS 255 (346)
Q Consensus 179 ~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~ 255 (346)
.++|++.. ..++++++.|+.|++||++. ...+..+..|...|.+++|+ +++|++
T Consensus 176 ~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-----------------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s 232 (340)
T 4aow_A 176 CVRFSPNSSNPIIVSCGWDKLVKVWNLAN-----------------------CKLKTNHIGHTGYLNTVTVSPDGSLCAS 232 (340)
T ss_dssp EEEECSCSSSCEEEEEETTSCEEEEETTT-----------------------TEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ceEEccCCCCcEEEEEcCCCEEEEEECCC-----------------------CceeeEecCCCCcEEEEEECCCCCEEEE
Confidence 99998733 45788999999999999998 44566778899999999998 789999
Q ss_pred EeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee-----
Q 019117 256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR----- 330 (346)
Q Consensus 256 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----- 330 (346)
++.|+.|++||+++.+ .+..+..+ ..|.+++|+|++ .+++++.|+.|++||++++..+....
T Consensus 233 ~s~Dg~i~iwd~~~~~---------~~~~~~~~-~~v~~~~~~~~~---~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 299 (340)
T 4aow_A 233 GGKDGQAMLWDLNEGK---------HLYTLDGG-DIINALCFSPNR---YWLCAATGPSIKIWDLEGKIIVDELKQEVIS 299 (340)
T ss_dssp EETTCEEEEEETTTTE---------EEEEEECS-SCEEEEEECSSS---SEEEEEETTEEEEEETTTTEEEEEECCC---
T ss_pred EeCCCeEEEEEeccCc---------eeeeecCC-ceEEeeecCCCC---ceeeccCCCEEEEEECCCCeEEEecccccee
Confidence 9999999999999876 45555544 579999999987 46677789999999998875443322
Q ss_pred -----eeeeEEEEEecCCCCC
Q 019117 331 -----LICFSLHVKYNPQSVY 346 (346)
Q Consensus 331 -----~~~~~~~~~~spdg~~ 346 (346)
+...+++++|+|||++
T Consensus 300 ~~~~~h~~~v~~l~~s~dg~~ 320 (340)
T 4aow_A 300 TSSKAEPPQCTSLAWSADGQT 320 (340)
T ss_dssp ----CCCCCEEEEEECTTSSE
T ss_pred eeccCCCCCEEEEEECCCCCE
Confidence 3345899999999974
No 29
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-41 Score=277.84 Aligned_cols=262 Identities=20% Similarity=0.317 Sum_probs=197.7
Q ss_pred eeeeec-cc-CCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc----eeeeEeeeecCCCccceEEEEEEEcCC
Q 019117 24 RVTNKL-QE-GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG----VIAALQSYVDEDKEESFYTVSWACNVD 96 (346)
Q Consensus 24 ~~~~~~-~~-h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~ 96 (346)
++...+ .+ |...|++++|+| ++.+||+++.|+ |++|+..... ....+..+ ..|...|.+++|+ |+
T Consensus 47 ~~~~~~~~~~h~~~v~~v~~sp----~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~--~~h~~~V~~v~~s--p~ 118 (330)
T 2hes_X 47 TLIDVLDETAHKKAIRSVAWRP----HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII--EGHENEVKGVAWS--ND 118 (330)
T ss_dssp EEEEEECTTCCCSCEEEEEECT----TSSEEEEEETTSCEEEEEC-------CCCEEEEEE--C----CEEEEEEC--TT
T ss_pred EEEEEEecCCccCCEEEEEECC----CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEE--cCCCCcEEEEEEC--CC
Confidence 444445 44 999999999999 789999999998 9999985321 11112222 2477889888877 89
Q ss_pred CCcEEEEeecCCeEEEEEccCc----ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC--eeEEEeccc
Q 019117 97 GIPFLVAGGINGIIRVIDVSNE----KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG--ICILIFAGA 170 (346)
Q Consensus 97 ~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~ 170 (346)
++ +|++|+.|++|++||+... +.+..+.+|...|.+++|+| ++.+|++++.|++|++||..++ +++..+.
T Consensus 119 g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~-- 194 (330)
T 2hes_X 119 GY-YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLN-- 194 (330)
T ss_dssp SC-EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEEC--
T ss_pred CC-EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEcc--
Confidence 98 9999999999999999432 45678889999999999999 8899999999999999999776 5677777
Q ss_pred CCCCcceEEEEecCCC--CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee-cccceEEEE
Q 019117 171 GGHRNEVLSVDFHPSD--IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-HSNYVDCNR 247 (346)
Q Consensus 171 ~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~ 247 (346)
+|...|.+++|+| + +.+|++++.|++|++||++...... .........+.. |...|.+++
T Consensus 195 -~h~~~v~~~~~~~-~~~~~~l~s~s~D~~v~iw~~~~~~~~~---------------~~~~~~~~~~~~~h~~~v~~v~ 257 (330)
T 2hes_X 195 -GHEGTVWSSDFDK-TEGVFRLCSGSDDSTVRVWKYMGDDEDD---------------QQEWVCEAILPDVHKRQVYNVA 257 (330)
T ss_dssp -CCSSCEEEEEECC-SSSSCEEEEEETTSCEEEEEEEEECTTS---------------CEEEEEEEECCSCCSSCEEEEE
T ss_pred -CCCCcEEEEEecC-CCCeeEEEEEeCCCeEEEEEecCCCccc---------------cceeEEeeecccccccceEEEE
Confidence 8999999999999 5 6789999999999999998632100 000112233333 889999999
Q ss_pred ec-CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCc-CeeEEEEee--cCCcceEEEEcCCCcEEEEEcCC
Q 019117 248 WL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC-DIWFIKFSC--DFHYNAAAIGNREGKIFVWELQS 322 (346)
Q Consensus 248 ~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~--~~~~~~l~~~~~dg~i~iwd~~~ 322 (346)
|+ +.+|++++.|++|++||..+++. .........|.. .|.+++|+| ++ .+|++|+.||.|++||+++
T Consensus 258 ~s~~~~l~s~~~dg~v~iw~~~~~~~------~~~~~~~~~h~~~~v~~v~~~~~~~~--~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 258 WGFNGLIASVGADGVLAVYEEVDGEW------KVFAKRALCHGVYEINVVKWLELNGK--TILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ECTTSCEEEEETTSCEEEEEEETTEE------EEEEEESCTTTTSCEEEEEEC-------CCEEEEETTSEEEEEEC--
T ss_pred EcCCCEEEEEeCCCEEEEEEcCCCce------EEEeccccccccceEEEEEEecCCCc--eEEEEecCCCcEEEEEecc
Confidence 98 67899999999999999876520 001223355666 899999999 55 6899999999999999875
No 30
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.4e-40 Score=271.91 Aligned_cols=269 Identities=14% Similarity=0.220 Sum_probs=214.7
Q ss_pred eeeeccccccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEE
Q 019117 10 PLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYT 88 (346)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~ 88 (346)
...|.+.........+...+++|...|.+++|+| ++.+|++++.|+ |++||+.+++.+..+.. |...|.+
T Consensus 42 v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~----dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~-----h~~~v~~ 112 (319)
T 3frx_A 42 LISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA----DGAYALSASWDKTLRLWDVATGETYQRFVG-----HKSDVMS 112 (319)
T ss_dssp EEEEEEEEETTEEEEEEEEEECCSSCEEEEEECT----TSSEEEEEETTSEEEEEETTTTEEEEEEEC-----CSSCEEE
T ss_pred EEEecCCCCCccccccceEEeCCcccEEEEEECC----CCCEEEEEeCCCEEEEEECCCCCeeEEEcc-----CCCcEEE
Confidence 3445444322233345677899999999999999 789999999998 99999999988777664 7778888
Q ss_pred EEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCC-----CCceEEEeeCCCCEEEEecCCCee
Q 019117 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL-----KPSLVVSASKDESVRLWNVQTGIC 163 (346)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~s~~~d~~i~iwd~~~~~~ 163 (346)
++|. |++. +|++|+.|++|++||++ ++.+..+.+|...|.++.|.|. ++..+++++.|+.|++||+++.+.
T Consensus 113 ~~~~--~~~~-~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 188 (319)
T 3frx_A 113 VDID--KKAS-MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188 (319)
T ss_dssp EEEC--TTSC-EEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE
T ss_pred EEEc--CCCC-EEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh
Confidence 8776 8888 99999999999999986 5677788899999999999983 234899999999999999999998
Q ss_pred EEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce
Q 019117 164 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV 243 (346)
Q Consensus 164 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 243 (346)
...+. +|...|.+++|+| ++.+|++++.||.|++||++. ...+..+. +...|
T Consensus 189 ~~~~~---~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~-----------------------~~~~~~~~-~~~~v 240 (319)
T 3frx_A 189 EADFI---GHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAA-----------------------KKAMYTLS-AQDEV 240 (319)
T ss_dssp EEEEC---CCCSCEEEEEECT-TSSEEEEEETTCEEEEEETTT-----------------------TEEEEEEE-CCSCE
T ss_pred heeec---CCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-----------------------CcEEEEec-CCCcE
Confidence 88888 7999999999999 999999999999999999988 23344454 34679
Q ss_pred EEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117 244 DCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (346)
Q Consensus 244 ~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~ 321 (346)
.+++|+ +.++++++ ++.+++|++.......... .........+...+.+++|+||+ ++|++|+.||.|++||+.
T Consensus 241 ~~~~~sp~~~~la~~~-~~~i~v~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~spdg--~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 241 FSLAFSPNRYWLAAAT-ATGIKVFSLDPQYLVDDLR-PEFAGYSKAAEPHAVSLAWSADG--QTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp EEEEECSSSSEEEEEE-TTEEEEEEETTEEEEEEEC-CCCTTCCGGGCCCEEEEEECTTS--SEEEEEETTSCEEEEEEE
T ss_pred EEEEEcCCCCEEEEEc-CCCcEEEEeCcCeeeeccC-ccccccccCcCcceeEEEECCCC--CEEEEeecCceEEEEEEe
Confidence 999998 66676665 5569999998654210000 00011112356678999999999 799999999999999998
Q ss_pred CC
Q 019117 322 SS 323 (346)
Q Consensus 322 ~~ 323 (346)
++
T Consensus 317 t~ 318 (319)
T 3frx_A 317 TA 318 (319)
T ss_dssp EC
T ss_pred ec
Confidence 75
No 31
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.9e-40 Score=274.40 Aligned_cols=246 Identities=19% Similarity=0.232 Sum_probs=211.2
Q ss_pred eeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc------eeeeEeeeecCCCccceEEEEEEEcCC
Q 019117 24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG------VIAALQSYVDEDKEESFYTVSWACNVD 96 (346)
Q Consensus 24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~ 96 (346)
+....+..|...|.+++|+| ++.+||+++.|+ +++|++.... ....+. .|...|.+++|. |+
T Consensus 97 ~~~~~~~~~~~~v~~~~~sp----~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~--~~ 165 (354)
T 2pbi_B 97 NKEHAVTMPCTWVMACAYAP----SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVA-----MHTNYLSACSFT--NS 165 (354)
T ss_dssp CEEEEEECSSSCCCEEEECT----TSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEE-----ECSSCEEEEEEC--SS
T ss_pred CcceEEecCCCCEEEEEECC----CCCEEEEeeCCCCEEEEEEeccccccccccceeee-----ccCCcEEEEEEe--CC
Confidence 44556678899999999999 789999999999 9999986432 222232 277788888776 88
Q ss_pred CCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCC-CCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCc
Q 019117 97 GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL-KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN 175 (346)
Q Consensus 97 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 175 (346)
+. .|++++.|++|++||+.+++.+..+.+|...|.+++|+|. ++++|++|+.||+|++||+++++++..+. +|..
T Consensus 166 ~~-~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~---~h~~ 241 (354)
T 2pbi_B 166 DM-QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE---THES 241 (354)
T ss_dssp SS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEEC---CCSS
T ss_pred CC-EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEec---CCCC
Confidence 88 9999999999999999999999999999999999999884 35799999999999999999999999888 7999
Q ss_pred ceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee--cccceEEEEec--CC
Q 019117 176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV--HSNYVDCNRWL--GD 251 (346)
Q Consensus 176 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~--~~ 251 (346)
.|++++|+| ++.+|++++.|++|++||++... .+..+.. +...+.++.|+ +.
T Consensus 242 ~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~~-----------------------~~~~~~~~~~~~~~~~~~~s~~g~ 297 (354)
T 2pbi_B 242 DVNSVRYYP-SGDAFASGSDDATCRLYDLRADR-----------------------EVAIYSKESIIFGASSVDFSLSGR 297 (354)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEETTTTE-----------------------EEEEECCTTCCSCEEEEEECTTSS
T ss_pred CeEEEEEeC-CCCEEEEEeCCCeEEEEECCCCc-----------------------EEEEEcCCCcccceeEEEEeCCCC
Confidence 999999999 88999999999999999998732 1222222 23467889998 88
Q ss_pred EEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117 252 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (346)
Q Consensus 252 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd 319 (346)
+|++++.|++|++||+.+++ .+..+.+|...|.+++|+|++ .+|++|+.||.|++|+
T Consensus 298 ~l~~g~~d~~i~vwd~~~~~---------~~~~l~~h~~~v~~l~~spdg--~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 298 LLFAGYNDYTINVWDVLKGS---------RVSILFGHENRVSTLRVSPDG--TAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEEETTSCEEEEETTTCS---------EEEEECCCSSCEEEEEECTTS--SCEEEEETTSEEEEEC
T ss_pred EEEEEECCCcEEEEECCCCc---------eEEEEECCCCcEEEEEECCCC--CEEEEEcCCCCEEecC
Confidence 99999999999999998776 567788999999999999999 7999999999999996
No 32
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.4e-40 Score=292.98 Aligned_cols=266 Identities=22% Similarity=0.354 Sum_probs=228.2
Q ss_pred eeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117 24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (346)
Q Consensus 24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 102 (346)
+....+.+|...|++++|+| ++.+|++++.|+ |++||... ..+..+. .+...+.+++++ |+++ +|+
T Consensus 294 ~~~~~~~~h~~~v~~~~~~~----~~~~l~t~~~d~~i~~w~~~~-~~~~~~~-----~~~~~v~~~~~s--~~g~-~l~ 360 (577)
T 2ymu_A 294 QLLQTLTGHSSSVWGVAFSP----DGQTIASASDDKTVKLWNRNG-QHLQTLT-----GHSSSVWGVAFS--PDGQ-TIA 360 (577)
T ss_dssp CEEEEECCCSSCEEEEEECT----TSSEEEEEETTSCEEEEETTS-CEEEEEC-----CCSSCEEEEEEC--TTSS-EEE
T ss_pred cEEEEEecCCCCeEEEEECC----CCCEEEEEeCCCeEEEEeCCC-CeeEEEe-----CCCCCEEEEEEC--CCCC-EEE
Confidence 45567789999999999999 789999999988 99999653 4444443 366778777766 9999 999
Q ss_pred EeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEe
Q 019117 103 AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 182 (346)
Q Consensus 103 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 182 (346)
+++.|+.|++||. +++.+..+.+|...|.+++|+| ++.+|++++.|+.|++||. +++.+..+. +|...|++++|
T Consensus 361 ~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~---~~~~~v~~~~~ 434 (577)
T 2ymu_A 361 SASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLT---GHSSSVWGVAF 434 (577)
T ss_dssp EEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEE---CCSSCEEEEEE
T ss_pred EEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEec---CCCCCeEEEEE
Confidence 9999999999995 5778888999999999999999 8999999999999999996 577777777 79999999999
Q ss_pred cCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecC
Q 019117 183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN 260 (346)
Q Consensus 183 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~ 260 (346)
+| ++.+|++++.|+.|++||+.. ..+..+..|...|.+++|+ +++|++++.|+
T Consensus 435 s~-d~~~l~~~~~d~~v~~w~~~~------------------------~~~~~~~~~~~~v~~~~~spd~~~las~~~d~ 489 (577)
T 2ymu_A 435 SP-DDQTIASASDDKTVKLWNRNG------------------------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 489 (577)
T ss_dssp CT-TSSEEEEEETTSEEEEEETTS------------------------CEEEEEECCSSCEEEEEECTTSCEEEEEETTS
T ss_pred CC-CCCEEEEEcCCCEEEEEECCC------------------------CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 99 889999999999999999754 3456778899999999998 78999999999
Q ss_pred eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCccee-eeeeeeEEEEE
Q 019117 261 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI-ARLICFSLHVK 339 (346)
Q Consensus 261 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~ 339 (346)
+|++||.. ++ .+..+.+|...|++++|+|++ ++|++++.||.|++||. +++.+.. ..+.+.+++++
T Consensus 490 ~i~iw~~~-~~---------~~~~~~~h~~~v~~l~~s~dg--~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~ 556 (577)
T 2ymu_A 490 TVKLWNRN-GQ---------LLQTLTGHSSSVRGVAFSPDG--QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA 556 (577)
T ss_dssp EEEEEETT-SC---------EEEEEECCSSCEEEEEECTTS--SCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEE
T ss_pred EEEEEcCC-CC---------EEEEEeCCCCCEEEEEEcCCC--CEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEE
Confidence 99999964 33 677888999999999999999 78999999999999996 4554443 33456799999
Q ss_pred ecCCCCC
Q 019117 340 YNPQSVY 346 (346)
Q Consensus 340 ~spdg~~ 346 (346)
|+|||+|
T Consensus 557 fs~dg~~ 563 (577)
T 2ymu_A 557 FSPDGQT 563 (577)
T ss_dssp ECTTSSC
T ss_pred EcCCCCE
Confidence 9999986
No 33
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3e-41 Score=276.94 Aligned_cols=258 Identities=21% Similarity=0.282 Sum_probs=200.9
Q ss_pred ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCce--eeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV--IAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (346)
Q Consensus 28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 104 (346)
.+.+|.+.|++++|+| ++++||+|+.|+ |+|||+.++.. +..+. .|...|.+++|+...+++ +|++|
T Consensus 8 ~~~~H~~~V~~v~~s~----~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~-----gH~~~V~~v~~~~~~~~~-~l~s~ 77 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDY----YGTRLATCSSDRSVKIFDVRNGGQILIADLR-----GHEGPVWQVAWAHPMYGN-ILASC 77 (316)
T ss_dssp ------CCEEEEEECG----GGCEEEEEETTTEEEEEEEETTEEEEEEEEE-----CCSSCEEEEEECCGGGSS-CEEEE
T ss_pred ecccccCeEEEeeEcC----CCCEEEEEeCCCeEEEEEecCCCcEEEEEEc-----CCCccEEEEEeCCCCCCC-EEEEE
Confidence 4579999999999999 789999999998 99999987643 23333 378899999887322466 99999
Q ss_pred ecCCeEEEEEccCcc--eeeeeccCCCceEEEEEeCCC-CceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117 105 GINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLK-PSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 181 (346)
Q Consensus 105 ~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 181 (346)
+.|++|++||+.+++ ....+.+|...|.+++|+|+. +.+|++|+.|++|++||++.+..........+|...|.+++
T Consensus 78 s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~ 157 (316)
T 3bg1_A 78 SYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVS 157 (316)
T ss_dssp ETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCE
T ss_pred ECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEE
Confidence 999999999998874 566788899999999999932 77999999999999999987643322222237999999999
Q ss_pred ecCCC----------------CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEE
Q 019117 182 FHPSD----------------IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC 245 (346)
Q Consensus 182 ~~~~~----------------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 245 (346)
|+|+. +.+|++++.|+.|++||++.... ......+..|...|.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~--------------------~~~~~~l~~h~~~V~~ 217 (316)
T 3bg1_A 158 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ--------------------WKEEQKLEAHSDWVRD 217 (316)
T ss_dssp ECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC--------------------EEEEECCBCCSSCEEE
T ss_pred EccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc--------------------cceeeecccCCCceEE
Confidence 99831 36899999999999999975210 1234567789999999
Q ss_pred EEec--C----CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117 246 NRWL--G----DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (346)
Q Consensus 246 ~~~~--~----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd 319 (346)
++|+ + ++|++++.|++|++|++.+..... .....+..|...|.+++|+|++ .+|++++.|+.|++|+
T Consensus 218 v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~-----~~~~~~~~~~~~v~~v~~sp~g--~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 218 VAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNT-----WSPKLLHKFNDVVWHVSWSITA--NILAVSGGDNKVTLWK 290 (316)
T ss_dssp EECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCC-----CBCCEEEECSSCEEEEEECTTT--CCEEEEESSSCEEEEE
T ss_pred EEecCCCCCCCceEEEEcCCCeEEEEEccCccccc-----hhhhhhhcCCCcEEEEEEcCCC--CEEEEEcCCCeEEEEE
Confidence 9998 3 689999999999999997632100 0122334567899999999999 7899999999999999
Q ss_pred cCC
Q 019117 320 LQS 322 (346)
Q Consensus 320 ~~~ 322 (346)
...
T Consensus 291 ~~~ 293 (316)
T 3bg1_A 291 ESV 293 (316)
T ss_dssp ECT
T ss_pred ECC
Confidence 863
No 34
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.7e-40 Score=281.56 Aligned_cols=271 Identities=13% Similarity=0.136 Sum_probs=229.3
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc------eeeeEeeeecCCCccceEEEEEEEcC
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG------VIAALQSYVDEDKEESFYTVSWACNV 95 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~ 95 (346)
......+.+|.++|++++|+| .+|++++.|+ |++|++.+++ ....+. .|...|.+++|. |
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~------~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~--~ 72 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-----VHKSGLHHVDVL--Q 72 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS------SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-----CCTTCEEEEEEE--E
T ss_pred hhhhhhhhhhhcCeEEEEecC------CeEEEEcCCCEEEEEECCCcccccCCCcceEEe-----cCCCcEEEEEEe--c
Confidence 456677899999999999987 6999999888 9999998877 444444 377889999888 6
Q ss_pred C----C---CcEEEEeecCCeEEEEEccCcce-----eeeeccC-----CCceEEEEEe----CCCCce-EEEeeCCCCE
Q 019117 96 D----G---IPFLVAGGINGIIRVIDVSNEKL-----HKSFVGH-----GDSINEIRTQ----PLKPSL-VVSASKDESV 153 (346)
Q Consensus 96 ~----~---~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~~-l~s~~~d~~i 153 (346)
+ + + +|++++.||.|++||+.+++. ...+..| ...|.+++|+ | ++.+ |++++.||.|
T Consensus 73 ~~~~~g~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i 150 (397)
T 1sq9_A 73 AIERDAFELC-LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTT 150 (397)
T ss_dssp EEETTTEEEE-EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCE
T ss_pred ccccCCcccc-EEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcE
Confidence 6 7 7 999999999999999998887 8888888 5999999999 8 7888 9999999999
Q ss_pred EEEecCC------CeeEE-----Eecc----cCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeec
Q 019117 154 RLWNVQT------GICIL-----IFAG----AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT 218 (346)
Q Consensus 154 ~iwd~~~------~~~~~-----~~~~----~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 218 (346)
++||+++ ++.+. .+.. ...|...|.+++|+| ++ ++++++.|+.|++||++.
T Consensus 151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~------------ 216 (397)
T 1sq9_A 151 YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELST------------ 216 (397)
T ss_dssp EEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTT------------
T ss_pred EEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCC------------
Confidence 9999988 66555 5530 014889999999999 77 999999999999999987
Q ss_pred CCCCCCCCccceeceEEEee---c---ccceEEEEec--CCEEEEEeec---CeEEEEcCCCCCCCCCCccccccccccC
Q 019117 219 DLPSKFPTKYVQFPVFIASV---H---SNYVDCNRWL--GDFILSKSVD---NEIVLWEPKMKEQSPGEGTADILQKYPV 287 (346)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~---~---~~~i~~~~~~--~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 287 (346)
...+..+.. | ...|.+++|+ +++|++++.| +.|++||+++++ .+..+..
T Consensus 217 -----------~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~---------~~~~~~~ 276 (397)
T 1sq9_A 217 -----------LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE---------RIGSLSV 276 (397)
T ss_dssp -----------TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC---------EEEEECB
T ss_pred -----------CceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc---------ccceecc
Confidence 345666777 8 8999999998 8899999999 999999999876 5666666
Q ss_pred -------------CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee-------e---------------e
Q 019117 288 -------------PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR-------L---------------I 332 (346)
Q Consensus 288 -------------~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~---------------~ 332 (346)
|...|.+++|+|++ .+|++++.||.|++||+.+++.+..+. + .
T Consensus 277 ~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 354 (397)
T 1sq9_A 277 PTHSSQASLGEFAHSSWVMSLSFNDSG--ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAE 354 (397)
T ss_dssp C--------CCBSBSSCEEEEEECSSS--SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSS
T ss_pred CcccccccccccccCCcEEEEEECCCC--CEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccC
Confidence 88999999999999 799999999999999999998776665 2 5
Q ss_pred eeEEEEEecCCC
Q 019117 333 CFSLHVKYNPQS 344 (346)
Q Consensus 333 ~~~~~~~~spdg 344 (346)
..+.+++|+|+|
T Consensus 355 ~~v~~~~~~~~g 366 (397)
T 1sq9_A 355 PGVFDVKFLKKG 366 (397)
T ss_dssp CCEEEEEEECTT
T ss_pred CceeEEEecccc
Confidence 668999999998
No 35
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1e-39 Score=275.92 Aligned_cols=256 Identities=21% Similarity=0.336 Sum_probs=209.7
Q ss_pred ceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEE
Q 019117 35 PLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVI 113 (346)
Q Consensus 35 ~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw 113 (346)
.|++++|+| ++++||+|+.|+ |++||+.+++....+.. |...|.+++|. |+++ +|++++.|++|++|
T Consensus 125 ~v~~v~~s~----dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----h~~~v~~~~~~--p~~~-~l~s~s~d~~v~iw 192 (393)
T 1erj_A 125 YIRSVCFSP----DGKFLATGAEDRLIRIWDIENRKIVMILQG-----HEQDIYSLDYF--PSGD-KLVSGSGDRTVRIW 192 (393)
T ss_dssp BEEEEEECT----TSSEEEEEETTSCEEEEETTTTEEEEEECC-----CSSCEEEEEEC--TTSS-EEEEEETTSEEEEE
T ss_pred eEEEEEECC----CCCEEEEEcCCCeEEEEECCCCcEEEEEcc-----CCCCEEEEEEc--CCCC-EEEEecCCCcEEEE
Confidence 499999999 789999999998 99999988877666653 77788888876 8998 99999999999999
Q ss_pred EccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecc----cCCCCcceEEEEecCCCCcE
Q 019117 114 DVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG----AGGHRNEVLSVDFHPSDIYR 189 (346)
Q Consensus 114 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~ 189 (346)
|+.+++....+. +...+.+++|+|.++.+|++|+.|+.|++||+++++.+..+.. ..+|...|.+++|+| ++.+
T Consensus 193 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~ 270 (393)
T 1erj_A 193 DLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQS 270 (393)
T ss_dssp ETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSE
T ss_pred ECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-CCCE
Confidence 999998877776 5678999999997788999999999999999999988777631 126899999999999 8999
Q ss_pred EEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcC
Q 019117 190 IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEP 267 (346)
Q Consensus 190 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~ 267 (346)
|++++.|+.|++||++........ ...........+.+|...|.+++|+ +.+|++++.|+.|++||+
T Consensus 271 l~s~s~d~~v~~wd~~~~~~~~~~-----------~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~ 339 (393)
T 1erj_A 271 VVSGSLDRSVKLWNLQNANNKSDS-----------KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 339 (393)
T ss_dssp EEEEETTSEEEEEEC--------------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred EEEEeCCCEEEEEECCCCCCcccc-----------cCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 999999999999999873321100 0001123455677899999999998 789999999999999999
Q ss_pred CCCCCCCCCccccccccccCCCcCeeEEEEeecC----CcceEEEEcCCCcEEEEEcCCCC
Q 019117 268 KMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF----HYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
.+++ .+..+.+|...|.+++|+++. .+.+|++|+.||.|++|++...+
T Consensus 340 ~~~~---------~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~~ 391 (393)
T 1erj_A 340 KSGN---------PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIA 391 (393)
T ss_dssp TTCC---------EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC-
T ss_pred CCCe---------EEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccccC
Confidence 9876 677888999999999998731 12689999999999999987643
No 36
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.4e-39 Score=266.89 Aligned_cols=249 Identities=21% Similarity=0.356 Sum_probs=213.2
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (346)
.+....+.+|...|.+++|+| ++++|++++.|+ |++||+.+++.+..+.. |...|.+++|. |+++ +|
T Consensus 55 ~~~~~~~~~h~~~v~~~~~~~----~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~--~~~~-~l 122 (312)
T 4ery_A 55 GKFEKTISGHKLGISDVAWSS----DSNLLVSASDDKTLKIWDVSSGKCLKTLKG-----HSNYVFCCNFN--PQSN-LI 122 (312)
T ss_dssp CCEEEEECCCSSCEEEEEECT----TSSEEEEEETTSEEEEEETTTCCEEEEEEC-----CSSCEEEEEEC--SSSS-EE
T ss_pred cccchhhccCCCceEEEEEcC----CCCEEEEECCCCEEEEEECCCCcEEEEEcC-----CCCCEEEEEEc--CCCC-EE
Confidence 345567789999999999999 789999999998 99999999888777664 66778777776 8888 99
Q ss_pred EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117 102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 181 (346)
Q Consensus 102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 181 (346)
++|+.|+.|++||+.+++.+..+..|...|.+++|+| ++.+|++++.|+.|++||+++++.+..+.. .+...+..++
T Consensus 123 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~ 199 (312)
T 4ery_A 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVK 199 (312)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECC--SSCCCEEEEE
T ss_pred EEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeEEec--cCCCceEEEE
Confidence 9999999999999999999999999999999999999 889999999999999999999988877652 4667899999
Q ss_pred ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEE--Eec---CCEEEEE
Q 019117 182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN--RWL---GDFILSK 256 (346)
Q Consensus 182 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~---~~~l~~~ 256 (346)
|+| ++.+|++++.|+.|++||++.. ..+..+..|...+.++ .+. +.+|+++
T Consensus 200 ~~~-~~~~l~~~~~d~~i~iwd~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 255 (312)
T 4ery_A 200 FSP-NGKYILAATLDNTLKLWDYSKG-----------------------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255 (312)
T ss_dssp ECT-TSSEEEEEETTTEEEEEETTTT-----------------------EEEEEECSSCCSSSCCCEEEECSSSCEEEEC
T ss_pred ECC-CCCEEEEEcCCCeEEEEECCCC-----------------------cEEEEEEecCCceEEEEEEEEeCCCcEEEEE
Confidence 999 8999999999999999999883 3344455555433221 222 7799999
Q ss_pred eecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc--CCCcEEEEEcC
Q 019117 257 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN--REGKIFVWELQ 321 (346)
Q Consensus 257 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~--~dg~i~iwd~~ 321 (346)
+.||.|++||+.+++ .+..+.+|...|.+++|+|++ .+|++++ .|+.|++|+..
T Consensus 256 ~~dg~i~vwd~~~~~---------~~~~~~~h~~~v~~~~~~p~~--~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 256 SEDNLVYIWNLQTKE---------IVQKLQGHTDVVISTACHPTE--NIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CTTSCEEEEETTTCC---------EEEEECCCSSCEEEEEECSSS--SEEEEEECTTTCCEEEEECC
T ss_pred CCCCEEEEEECCCch---------hhhhhhccCCcEEEEeecCcC--CceEEEEccCCccEEEecCC
Confidence 999999999999876 678888999999999999999 6888876 69999999864
No 37
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.5e-39 Score=268.71 Aligned_cols=257 Identities=13% Similarity=0.169 Sum_probs=203.4
Q ss_pred eeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117 24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (346)
Q Consensus 24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 102 (346)
.+...+.+|...|++++|+| ++.++++++.|+ |++||+.+++.+..+.. |...|.+++|+ |+++ +|+
T Consensus 67 ~~~~~l~~h~~~V~~~~~~~----~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~-----h~~~v~~v~~s--p~~~-~l~ 134 (343)
T 2xzm_R 67 IPHKALTGHNHFVSDLALSQ----ENCFAISSSWDKTLRLWDLRTGTTYKRFVG-----HQSEVYSVAFS--PDNR-QIL 134 (343)
T ss_dssp EEEEEECCCSSCEEEEEECS----STTEEEEEETTSEEEEEETTSSCEEEEEEC-----CCSCEEEEEEC--SSTT-EEE
T ss_pred cccchhccCCCceEEEEECC----CCCEEEEEcCCCcEEEEECCCCcEEEEEcC-----CCCcEEEEEEC--CCCC-EEE
Confidence 45667899999999999999 789999999998 99999999888777664 77788888876 8998 999
Q ss_pred EeecCCeEEEEEccCcceeee--eccCCCceEEEEEeCCCC----------ceEEEeeCCCCEEEEecCCCeeEEEeccc
Q 019117 103 AGGINGIIRVIDVSNEKLHKS--FVGHGDSINEIRTQPLKP----------SLVVSASKDESVRLWNVQTGICILIFAGA 170 (346)
Q Consensus 103 ~~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~----------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 170 (346)
+++.|+.|++||+........ ...|...|.+++|+| .. .+|++++.|+.|++||. ..+....+.
T Consensus 135 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~-- 210 (343)
T 2xzm_R 135 SAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFK-- 210 (343)
T ss_dssp EEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEE--
T ss_pred EEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEc--
Confidence 999999999999974332222 236889999999999 44 68999999999999994 566777777
Q ss_pred CCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-
Q 019117 171 GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL- 249 (346)
Q Consensus 171 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 249 (346)
+|...|.+++|+| ++.+|++++.|+.|++||++... .+...+ .+...|.+++|+
T Consensus 211 -~h~~~v~~~~~s~-~g~~l~sgs~dg~v~iwd~~~~~----------------------~~~~~~-~~~~~v~~v~~sp 265 (343)
T 2xzm_R 211 -AHESNVNHLSISP-NGKYIATGGKDKKLLIWDILNLT----------------------YPQREF-DAGSTINQIAFNP 265 (343)
T ss_dssp -CCSSCEEEEEECT-TSSEEEEEETTCEEEEEESSCCS----------------------SCSEEE-ECSSCEEEEEECS
T ss_pred -CccccceEEEECC-CCCEEEEEcCCCeEEEEECCCCc----------------------ccceee-cCCCcEEEEEECC
Confidence 7999999999999 99999999999999999995421 111122 345669999998
Q ss_pred CCEEEEEeecCeEEEEcCCCCCCCC--CCc--cccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117 250 GDFILSKSVDNEIVLWEPKMKEQSP--GEG--TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (346)
Q Consensus 250 ~~~l~~~~~d~~i~iwd~~~~~~~~--~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (346)
...+++++.|+.|++||+.+.+... ... .........+|...|.+++|+|++ .+|++|+.||.|++|+++++
T Consensus 266 ~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g--~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 266 KLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALG--KKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSS--CCEEEEETTSEEEEEEEEEE
T ss_pred CCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCC--CeEEEecCCceEEEEEEEcc
Confidence 3334456678899999998765322 000 001112233677889999999999 78999999999999998765
No 38
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.2e-39 Score=262.35 Aligned_cols=269 Identities=16% Similarity=0.220 Sum_probs=230.2
Q ss_pred ccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117 20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI 98 (346)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (346)
...+++...+.+|.+.|++++| | ++.+|++++.|+ |++||+.++.....+.. |...+.+++|. |+++
T Consensus 5 ~~~~~~~~~l~~h~~~v~~~~~-~----~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~-----~~~~v~~~~~~--~~~~ 72 (313)
T 3odt_A 5 FTGYQLSATLKGHDQDVRDVVA-V----DDSKVASVSRDGTVRLWSKDDQWLGTVVYT-----GQGFLNSVCYD--SEKE 72 (313)
T ss_dssp CCCCEEEEEECCCSSCEEEEEE-E----ETTEEEEEETTSEEEEEEESSSEEEEEEEE-----CSSCEEEEEEE--TTTT
T ss_pred cccHHHHHHhhCCCCCcEEEEe-c----CCCEEEEEEcCCcEEEEECCCCEEEEEeec-----CCccEEEEEEC--CCCC
Confidence 3457788899999999999999 7 678999999998 99999988777666654 67788888887 8898
Q ss_pred cEEEEeecCCeEEEEEccCc---ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCc
Q 019117 99 PFLVAGGINGIIRVIDVSNE---KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN 175 (346)
Q Consensus 99 ~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 175 (346)
+|++++.||.|++|++... +.+..+.+|...|.++.|. +.++++++.|+.|++|| .++.+..+. .|..
T Consensus 73 -~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~---~~~~ 143 (313)
T 3odt_A 73 -LLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQ---AHNA 143 (313)
T ss_dssp -EEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEE---CCSS
T ss_pred -EEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecc---cCCC
Confidence 9999999999999998654 5677888999999999994 46999999999999999 677777887 7999
Q ss_pred ceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee-cccceEEEEec-CCEE
Q 019117 176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-HSNYVDCNRWL-GDFI 253 (346)
Q Consensus 176 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~-~~~l 253 (346)
.+.+++|+|.++.++++++.|+.|++||... ....+.. |...+.++.|+ ...+
T Consensus 144 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-------------------------~~~~~~~~~~~~i~~~~~~~~~~~ 198 (313)
T 3odt_A 144 SVWDAKVVSFSENKFLTASADKTIKLWQNDK-------------------------VIKTFSGIHNDVVRHLAVVDDGHF 198 (313)
T ss_dssp CEEEEEEEETTTTEEEEEETTSCEEEEETTE-------------------------EEEEECSSCSSCEEEEEEEETTEE
T ss_pred ceeEEEEccCCCCEEEEEECCCCEEEEecCc-------------------------eEEEEeccCcccEEEEEEcCCCeE
Confidence 9999999876788999999999999999544 3444555 88899999998 5559
Q ss_pred EEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee-
Q 019117 254 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI- 332 (346)
Q Consensus 254 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~- 332 (346)
++++.|+.|++||+++++ .+..+..|...|.+++|+|++ .|++++.||.|++||+.++++.......
T Consensus 199 ~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~i~~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 266 (313)
T 3odt_A 199 ISCSNDGLIKLVDMHTGD---------VLRTYEGHESFVYCIKLLPNG---DIVSCGEDRTVRIWSKENGSLKQVITLPA 266 (313)
T ss_dssp EEEETTSEEEEEETTTCC---------EEEEEECCSSCEEEEEECTTS---CEEEEETTSEEEEECTTTCCEEEEEECSS
T ss_pred EEccCCCeEEEEECCchh---------hhhhhhcCCceEEEEEEecCC---CEEEEecCCEEEEEECCCCceeEEEeccC
Confidence 999999999999999876 677888899999999999998 4889999999999999999877665544
Q ss_pred eeEEEEEecCCCCC
Q 019117 333 CFSLHVKYNPQSVY 346 (346)
Q Consensus 333 ~~~~~~~~spdg~~ 346 (346)
..+.+++|+|+|++
T Consensus 267 ~~i~~~~~~~~~~~ 280 (313)
T 3odt_A 267 ISIWSVDCMSNGDI 280 (313)
T ss_dssp SCEEEEEECTTSCE
T ss_pred ceEEEEEEccCCCE
Confidence 36899999999863
No 39
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.1e-40 Score=280.60 Aligned_cols=256 Identities=17% Similarity=0.266 Sum_probs=209.3
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCcee----eeEeeeecCCCccceEEEEEEEcCCC
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI----AALQSYVDEDKEESFYTVSWACNVDG 97 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~ 97 (346)
.+....+.+|...|.+++|+| ++++||+++.|+ +++|++.+.... ..... ...|...+.++.|. |++
T Consensus 98 ~~~~~~~~~h~~~v~~~~~s~----~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~--~~gh~~~v~~~~~~--~~~ 169 (380)
T 3iz6_a 98 SQKTHAIKLHCPWVMECAFAP----NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRV--LTGHKGYASSCQYV--PDQ 169 (380)
T ss_dssp TEEEEEEECCCTTCCCCEECT----TSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCB--CCCCSSCCCCCBCC--SSS
T ss_pred CccceEEecCCCCEEEEEECC----CCCEEEEeeCCCcEEEEECCCCccccCCccceee--ccCCCcceEEEEEe--cCC
Confidence 345667889999999999999 789999999999 999998653211 11111 12366777777666 665
Q ss_pred CcEEEEeecCCeEEEEEccCcceeeee-----ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecC-CCeeEEEecccC
Q 019117 98 IPFLVAGGINGIIRVIDVSNEKLHKSF-----VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-TGICILIFAGAG 171 (346)
Q Consensus 98 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~ 171 (346)
...|++|+.|++|++||+.+++.+..+ .+|...|.+++|++.++++|++|+.|++|++||++ .++.+..+.
T Consensus 170 ~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~--- 246 (380)
T 3iz6_a 170 ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH--- 246 (380)
T ss_dssp SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC---
T ss_pred CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEEC---
Confidence 447999999999999999999988776 67999999999988678999999999999999998 456777777
Q ss_pred CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee-------cccceE
Q 019117 172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-------HSNYVD 244 (346)
Q Consensus 172 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~ 244 (346)
+|...|++++|+| ++.+|++++.|++|++||+++... +..+.. +...|+
T Consensus 247 ~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~-----------------------~~~~~~~~~~~~~~~~~v~ 302 (380)
T 3iz6_a 247 GHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQ-----------------------LQVYNREPDRNDNELPIVT 302 (380)
T ss_dssp CCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEE-----------------------EEEECCCCSSSCCSSCSCS
T ss_pred CcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcE-----------------------EEEecccccccccccCceE
Confidence 7999999999999 899999999999999999998432 222222 223478
Q ss_pred EEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccc----cCCCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117 245 CNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY----PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (346)
Q Consensus 245 ~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw 318 (346)
+++|+ +++|++|+.||.|++||+..++ .+..+ .+|.+.|.+++|+|++ .+|++|+.||.|++|
T Consensus 303 ~~~~s~~g~~l~~g~~dg~i~vwd~~~~~---------~~~~~~~~~~~h~~~v~~l~~s~dg--~~l~sgs~D~~i~iW 371 (380)
T 3iz6_a 303 SVAFSISGRLLFAGYSNGDCYVWDTLLAE---------MVLNLGTLQNSHEGRISCLGLSSDG--SALCTGSWDKNLKIW 371 (380)
T ss_dssp EEEECSSSSEEEEECTTSCEEEEETTTCC---------EEEEECCSCSSCCCCCCEEEECSSS--SEEEEECTTSCEEEE
T ss_pred EEEECCCCCEEEEEECCCCEEEEECCCCc---------eEEEEecccCCCCCceEEEEECCCC--CEEEEeeCCCCEEEE
Confidence 89998 8899999999999999998765 33333 5788999999999999 799999999999999
Q ss_pred EcCCCC
Q 019117 319 ELQSSP 324 (346)
Q Consensus 319 d~~~~~ 324 (346)
++...+
T Consensus 372 ~~~~~~ 377 (380)
T 3iz6_a 372 AFSGHR 377 (380)
T ss_dssp ECCSSS
T ss_pred ecCCCc
Confidence 998764
No 40
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.9e-39 Score=272.64 Aligned_cols=285 Identities=14% Similarity=0.131 Sum_probs=222.0
Q ss_pred cceeeeeecccCCCceEEEEEEeecCCCc-cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcC-CC
Q 019117 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYF-NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV-DG 97 (346)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~-~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~ 97 (346)
..+++...+.+|.+.|++++|+| ++ .+||+++.|+ |++||+.++.....+.. ..|...|.+++|+ | ++
T Consensus 61 ~~~~~~~~~~~h~~~v~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~h~~~v~~~~~~--~~~~ 131 (383)
T 3ei3_B 61 KSYKLHRTASPFDRRVTSLEWHP----THPTTVAVGSKGGDIILWDYDVQNKTSFIQG---MGPGDAITGMKFN--QFNT 131 (383)
T ss_dssp TTCEEEEEECCCSSCEEEEEECS----SCTTEEEEEEBTSCEEEEETTSTTCEEEECC---CSTTCBEEEEEEE--TTEE
T ss_pred cccceEEeccCCCCCEEEEEECC----CCCCEEEEEcCCCeEEEEeCCCcccceeeec---CCcCCceeEEEeC--CCCC
Confidence 45677888899999999999999 66 8999999988 99999988776655532 2478899998887 7 45
Q ss_pred CcEEEEeecCCeEEEEEccCcceeeeecc---CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC
Q 019117 98 IPFLVAGGINGIIRVIDVSNEKLHKSFVG---HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR 174 (346)
Q Consensus 98 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 174 (346)
. +|++++.|+.|++||+.+ +.+..+.. |...|.+++|+| ++.+|++++.|+.|++||+ +++.+..+. +|.
T Consensus 132 ~-~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~-~~~~~~~~~---~h~ 204 (383)
T 3ei3_B 132 N-QLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGL-DGHEIFKEK---LHK 204 (383)
T ss_dssp E-EEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEET-TSCEEEEEE---CSS
T ss_pred C-EEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEEC-CCCEEEEec---cCC
Confidence 6 999999999999999986 44445543 458899999999 8899999999999999999 577788887 799
Q ss_pred cceEEEEecCCCCc-EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---C
Q 019117 175 NEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---G 250 (346)
Q Consensus 175 ~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~ 250 (346)
..|.+++|+| ++. ++++++.|+.|++||++.... ....+..+ .|...|.+++|+ +
T Consensus 205 ~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~-------------------~~~~~~~~-~~~~~v~~~~~s~~~~ 263 (383)
T 3ei3_B 205 AKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKD-------------------KNSYIAEM-PHEKPVNAAYFNPTDS 263 (383)
T ss_dssp SCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCS-------------------TTCEEEEE-ECSSCEEEEEECTTTS
T ss_pred CcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCc-------------------ccceEEEe-cCCCceEEEEEcCCCC
Confidence 9999999999 666 999999999999999997321 01122233 699999999997 5
Q ss_pred CEEEEEeecCeEEEEcCCCCCCCCCCc-c-------ccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117 251 DFILSKSVDNEIVLWEPKMKEQSPGEG-T-------ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (346)
Q Consensus 251 ~~l~~~~~d~~i~iwd~~~~~~~~~~~-~-------~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~ 322 (346)
++|++++.|+.|++||+++.+...... + ...+...-.+.+.+..++|+|++ .+ +++.||.|++||+.+
T Consensus 264 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg--~~--s~s~d~~i~iwd~~~ 339 (383)
T 3ei3_B 264 TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD--QL--LLNDKRTIDIYDANS 339 (383)
T ss_dssp CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCT--TT--CTTCCCCEEEEETTT
T ss_pred CEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCc--cc--ccCCCCeEEEEecCC
Confidence 799999999999999999876321110 0 00000000122455667888888 34 888999999999999
Q ss_pred CCcceeeee---eeeEEEEEecCCCCC
Q 019117 323 SPPVLIARL---ICFSLHVKYNPQSVY 346 (346)
Q Consensus 323 ~~~~~~~~~---~~~~~~~~~spdg~~ 346 (346)
++.+..+.. .+.+..++|+|||++
T Consensus 340 ~~~~~~l~~~~~~~~~~~~~~s~~g~~ 366 (383)
T 3ei3_B 340 GGLVHQLRDPNAAGIISLNKFSPTGDV 366 (383)
T ss_dssp CCEEEEECBTTBCSCCCEEEECTTSSE
T ss_pred CceeeeecCCCCCceEEEEEEecCccE
Confidence 987666553 344667899999974
No 41
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.5e-39 Score=298.51 Aligned_cols=273 Identities=20% Similarity=0.292 Sum_probs=238.0
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (346)
+++.+.+.+|.+.|.+++|+| ++.+||+++.++ |++||+.++..+..+.. |...|.+++|+ |+++ +|
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp----~~~~la~~~~~g~v~iwd~~~~~~~~~~~~-----~~~~v~~~~~s--~~~~-~l 70 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHP----TEPWVLTTLYSGRVEIWNYETQVEVRSIQV-----TETPVRAGKFI--ARKN-WI 70 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECS----SSSEEEEEETTSEEEEEETTTTEEEEEEEC-----CSSCEEEEEEE--GGGT-EE
T ss_pred cccceeeecCCCceEEEEECC----CCCEEEEEeCCCEEEEEECCCCceEEEEec-----CCCcEEEEEEe--CCCC-EE
Confidence 456678899999999999999 789999999888 99999998887777764 77889888887 8898 99
Q ss_pred EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC-eeEEEecccCCCCcceEEE
Q 019117 102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-ICILIFAGAGGHRNEVLSV 180 (346)
Q Consensus 102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~ 180 (346)
++++.||.|++||+.+++.+..+.+|.+.|.+++|+| ++.+|++++.||.|++||++++ .....+. +|...|.++
T Consensus 71 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~---~~~~~v~~~ 146 (814)
T 3mkq_A 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFE---GHEHFVMCV 146 (814)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEE---CCSSCEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEc---CCCCcEEEE
Confidence 9999999999999999999999999999999999999 8899999999999999999887 6666776 799999999
Q ss_pred EecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee-cccceEEEEec----CCEEEE
Q 019117 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-HSNYVDCNRWL----GDFILS 255 (346)
Q Consensus 181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~----~~~l~~ 255 (346)
+|+|.++..+++++.||.|++||+... .....+.. +...+.++.|+ +.++++
T Consensus 147 ~~~p~~~~~l~~~~~dg~v~vwd~~~~-----------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 203 (814)
T 3mkq_A 147 AFNPKDPSTFASGCLDRTVKVWSLGQS-----------------------TPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203 (814)
T ss_dssp EEETTEEEEEEEEETTSEEEEEETTCS-----------------------SCSEEEECCCTTCCCEEEECCSTTCCEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCC-----------------------cceeEEecCCCCCEEEEEEEECCCCCEEEE
Confidence 999866789999999999999999872 22333443 34788899885 679999
Q ss_pred EeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee-ee
Q 019117 256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI-CF 334 (346)
Q Consensus 256 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~ 334 (346)
++.|+.|++||+.+++ .+..+..|...|.+++|+|++ .+|++++.||.|++||+.+++........ ..
T Consensus 204 ~~~dg~i~~~d~~~~~---------~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~ 272 (814)
T 3mkq_A 204 ASDDLTIKIWDYQTKS---------CVATLEGHMSNVSFAVFHPTL--PIIISGSEDGTLKIWNSSTYKVEKTLNVGLER 272 (814)
T ss_dssp ECTTSEEEEEETTTTE---------EEEEEECCSSCEEEEEECSSS--SEEEEEETTSCEEEEETTTCSEEEEECCSSSS
T ss_pred EeCCCEEEEEECCCCc---------EEEEEcCCCCCEEEEEEcCCC--CEEEEEeCCCeEEEEECCCCcEEEEeecCCCc
Confidence 9999999999998776 677788899999999999999 79999999999999999998766655433 46
Q ss_pred EEEEEecCCCC
Q 019117 335 SLHVKYNPQSV 345 (346)
Q Consensus 335 ~~~~~~spdg~ 345 (346)
+.+++|+|+|+
T Consensus 273 v~~~~~~~~~~ 283 (814)
T 3mkq_A 273 SWCIATHPTGR 283 (814)
T ss_dssp EEEEEECTTCG
T ss_pred EEEEEEccCCC
Confidence 88999999985
No 42
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-38 Score=266.25 Aligned_cols=274 Identities=14% Similarity=0.166 Sum_probs=232.1
Q ss_pred cceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCc
Q 019117 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (346)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (346)
........+.+|.++|++++|+| ++++|++++.++ |++||+.+++.+..+.. |...|.+++|+ |+++
T Consensus 20 G~~~~~~~l~~h~~~v~~~~~s~----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----h~~~v~~~~~~--~~~~- 87 (369)
T 3zwl_B 20 GSHMKAIKLTGHERPLTQVKYNK----EGDLLFSCSKDSSASVWYSLNGERLGTLDG-----HTGTIWSIDVD--CFTK- 87 (369)
T ss_dssp CCSEEEEEEECCSSCEEEEEECT----TSCEEEEEESSSCEEEEETTTCCEEEEECC-----CSSCEEEEEEC--TTSS-
T ss_pred ccccccEEEEEeeceEEEEEEcC----CCCEEEEEeCCCEEEEEeCCCchhhhhhhh-----cCCcEEEEEEc--CCCC-
Confidence 34445566899999999999999 789999999888 99999998888777654 77788888876 8888
Q ss_pred EEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCC-----CCEEEEecCCCee-----------
Q 019117 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD-----ESVRLWNVQTGIC----------- 163 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~----------- 163 (346)
+|++++.||.|++||+.+++.+..+. +...|.+++|+| ++.++++++.+ +.|++||+.....
T Consensus 88 ~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~ 165 (369)
T 3zwl_B 88 YCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEP 165 (369)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSC
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccce
Confidence 99999999999999999999988888 889999999999 88999999998 9999999976532
Q ss_pred EEEecccCCCCc--ceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc
Q 019117 164 ILIFAGAGGHRN--EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241 (346)
Q Consensus 164 ~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (346)
+..+. .|.. .+.+++|+| ++.++++++.||.|++||++.. ...+..+..|..
T Consensus 166 ~~~~~---~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~----------------------~~~~~~~~~~~~ 219 (369)
T 3zwl_B 166 IHKII---THEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNN----------------------YEYVDSIDLHEK 219 (369)
T ss_dssp SEEEE---CCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTT----------------------TEEEEEEECCSS
T ss_pred eeecc---CCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCC----------------------cEeEEEEecCCC
Confidence 22333 3555 899999999 8999999999999999999872 234567778999
Q ss_pred ceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCC------
Q 019117 242 YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG------ 313 (346)
Q Consensus 242 ~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg------ 313 (346)
.|.++.|+ +++|++++.|+.|++||+++.+ .+..+. +...+..++|+|++ .++++++.++
T Consensus 220 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---------~~~~~~-~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~ 287 (369)
T 3zwl_B 220 SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ---------VLKKYE-TDCPLNTAVITPLK--EFIILGGGQEAKDVTT 287 (369)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCC---------EEEEEE-CSSCEEEEEECSSS--SEEEEEECCC------
T ss_pred ceeEEEECCCCCEEEEecCCceEEEEECCCCc---------eeeeec-CCCCceeEEecCCC--ceEEEeecCCCceEEE
Confidence 99999998 8899999999999999999876 444444 56789999999999 6888888888
Q ss_pred --------cEEEEEcCCCCcceeee-eeeeEEEEEecCCCCC
Q 019117 314 --------KIFVWELQSSPPVLIAR-LICFSLHVKYNPQSVY 346 (346)
Q Consensus 314 --------~i~iwd~~~~~~~~~~~-~~~~~~~~~~spdg~~ 346 (346)
.+++||+.+++++.... +...+.+++|+|||++
T Consensus 288 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 329 (369)
T 3zwl_B 288 TSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTS 329 (369)
T ss_dssp -------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSE
T ss_pred EecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCE
Confidence 89999999988766544 4566899999999874
No 43
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8e-39 Score=284.17 Aligned_cols=270 Identities=22% Similarity=0.339 Sum_probs=220.7
Q ss_pred eeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE
Q 019117 25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (346)
Q Consensus 25 ~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 103 (346)
..+.|+||.++|++|+|+| +|++||+++.|+ |+||| .+++.+..+.. |...|.+++|+ |+++ +|++
T Consensus 8 e~~~L~GH~~~V~~~a~sp----dg~~las~~~d~~v~iWd-~~~~~~~~l~g-----h~~~V~~l~fs--pdg~-~las 74 (577)
T 2ymu_A 8 ERNRLEAHSSSVRGVAFSP----DGQTIASASDDKTVKLWN-RNGQLLQTLTG-----HSSSVWGVAFS--PDGQ-TIAS 74 (577)
T ss_dssp EEEEECCCSSCEEEEEECT----TSSCEEEEETTSEEEEEC-TTSCEEEEEEC-----CSSCEEEEEEC--TTSS-EEEE
T ss_pred EeeEECCCCCcEEEEEECC----CCCEEEEEeCCCEEEEEE-CCCCEEEEEeC-----CCCCEEEEEEC--CCCC-EEEE
Confidence 3456899999999999999 889999999998 99999 56777766654 77889888776 9999 9999
Q ss_pred eecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEec---------------
Q 019117 104 GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA--------------- 168 (346)
Q Consensus 104 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------------- 168 (346)
++.|+.|+|||. +++.+..+.+|...|.+++|+| ++.+|++++.|+.+++|+...........
T Consensus 75 ~~~d~~i~vWd~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 152 (577)
T 2ymu_A 75 ASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ 152 (577)
T ss_dssp EETTSCEEEEET-TSCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred EeCCCEEEEEEC-CCCEEEEEECCCCCEEEEEECC-CCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCc
Confidence 999999999995 6788899999999999999999 89999999999999999976432211110
Q ss_pred ----------------------ccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCC
Q 019117 169 ----------------------GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT 226 (346)
Q Consensus 169 ----------------------~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 226 (346)
....|...|.++.++| ++.++++++.|+.|++||...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~w~~~~-------------------- 211 (577)
T 2ymu_A 153 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNG-------------------- 211 (577)
T ss_dssp CEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECTTS--------------------
T ss_pred cceecccccceeccccceeeeeeccCCCcceeeeeecC-CCCEEEEEcCCCEEEEEeCCC--------------------
Confidence 0014667778888888 778888888888888888543
Q ss_pred ccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcc
Q 019117 227 KYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN 304 (346)
Q Consensus 227 ~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 304 (346)
..+..+..|...|.+++|+ +++|++++.|+.|++||... + .+..+.+|...|.+++|+|++ .
T Consensus 212 ----~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-~---------~~~~~~~~~~~v~~v~~~~d~--~ 275 (577)
T 2ymu_A 212 ----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q---------LLQTLTGHSSSVNGVAFRPDG--Q 275 (577)
T ss_dssp ----CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS-C---------EEEEECCCSSCEEEEEECTTS--S
T ss_pred ----cEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC-C---------EEEEEecCCCCEEEEEEcCCC--C
Confidence 3456778899999999998 78999999999999999653 2 567788899999999999999 7
Q ss_pred eEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117 305 AAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 305 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~ 346 (346)
+|++++.|+.|++||...........+...+.+++|+||+++
T Consensus 276 ~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 317 (577)
T 2ymu_A 276 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQT 317 (577)
T ss_dssp EEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSE
T ss_pred EEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCE
Confidence 899999999999999754322223334556899999999863
No 44
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1e-38 Score=266.69 Aligned_cols=279 Identities=10% Similarity=0.185 Sum_probs=217.7
Q ss_pred eeecccCCCceEEEEEEeecCCCc-cEEEEEcC---Cc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCC---C
Q 019117 26 TNKLQEGKRPLYAVVFNFIDSRYF-NVFATVGG---NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD---G 97 (346)
Q Consensus 26 ~~~~~~h~~~v~~~~~~p~~~~~~-~~la~~~~---~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~ 97 (346)
...+++|.+.|++++|+| ++ .++++++. |+ |++|++.+++....... .|...|.+++|. |+ +
T Consensus 11 ~~~~~~h~~~v~~~~~~p----~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~----~~~~~v~~~~~~--~~~~~~ 80 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVP----CSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI----EKAKPIKCGTFG--ATSLQQ 80 (357)
T ss_dssp EEEEEECSSCEEEEEECT----TSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE----EESSCEEEEECT--TCCTTT
T ss_pred hhhccCCCCceEEEEEcC----CCceEEEecCccCCCcEEEEEeCCCCcccceeee----cccCcEEEEEEc--CCCCCC
Confidence 345578999999999999 55 46666765 66 99999988776544332 267788888776 76 5
Q ss_pred CcEEEEeecCCeEEEEEccCcc-eeeeeccCCCceEEEEE------eCCCCceEEEeeCCCCEEEEecCCCe-eEEEecc
Q 019117 98 IPFLVAGGINGIIRVIDVSNEK-LHKSFVGHGDSINEIRT------QPLKPSLVVSASKDESVRLWNVQTGI-CILIFAG 169 (346)
Q Consensus 98 ~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~ 169 (346)
. +|++|+.||.|++||+.+++ .+..+.+|...|.++.| +| ++.+|++++.|+.|++||+++++ .+..+..
T Consensus 81 ~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~ 158 (357)
T 3i2n_A 81 R-YLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEP 158 (357)
T ss_dssp C-CEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECC
T ss_pred c-eEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcceeccc
Confidence 6 99999999999999999988 88899999999999965 56 78899999999999999999886 6777763
Q ss_pred cCCC-CcceEEEE----ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE
Q 019117 170 AGGH-RNEVLSVD----FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD 244 (346)
Q Consensus 170 ~~~~-~~~v~~~~----~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (346)
..++ ...+.+++ |+| ++.++++++.|+.|++||++..+ ......|...|.
T Consensus 159 ~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~------------------------~~~~~~~~~~v~ 213 (357)
T 3i2n_A 159 VQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMA------------------------LRWETNIKNGVC 213 (357)
T ss_dssp CTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTE------------------------EEEEEECSSCEE
T ss_pred cCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCc------------------------eeeecCCCCceE
Confidence 2222 34889998 677 88999999999999999998832 234466888999
Q ss_pred EEEec-----CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117 245 CNRWL-----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (346)
Q Consensus 245 ~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd 319 (346)
++.|+ ++++++++.|+.|++||+++.+..... ....+..|...|.+++|+|+++ .+|++++.||.|++||
T Consensus 214 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~iwd 288 (357)
T 3i2n_A 214 SLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGF----ASVSEKAHKSTVWQVRHLPQNR-ELFLTAGGAGGLHLWK 288 (357)
T ss_dssp EEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEE----EEEEEECCSSCEEEEEEETTEE-EEEEEEETTSEEEEEE
T ss_pred EEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccce----eeeccCCCcCCEEEEEECCCCC-cEEEEEeCCCcEEEee
Confidence 99997 479999999999999999886521100 0112337889999999999983 2899999999999999
Q ss_pred cCCCCcc-----------------eeee---eeeeEEEEEecCCCCC
Q 019117 320 LQSSPPV-----------------LIAR---LICFSLHVKYNPQSVY 346 (346)
Q Consensus 320 ~~~~~~~-----------------~~~~---~~~~~~~~~~spdg~~ 346 (346)
+.++... .... +...+.+++|+|+|++
T Consensus 289 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 335 (357)
T 3i2n_A 289 YEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRG 335 (357)
T ss_dssp EECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTT
T ss_pred cCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCe
Confidence 9875432 1222 3345899999999975
No 45
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-39 Score=273.14 Aligned_cols=273 Identities=20% Similarity=0.257 Sum_probs=219.7
Q ss_pred ccCCCceEEEEEEeecCCCcc-EEEEEcCCc-EEEEEe----ccCc------eeeeEeeeecC-----CCccceEEEEEE
Q 019117 30 QEGKRPLYAVVFNFIDSRYFN-VFATVGGNR-VTVYQC----LEGG------VIAALQSYVDE-----DKEESFYTVSWA 92 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~-~la~~~~~~-v~i~~~----~~~~------~~~~~~~~~~~-----~~~~~v~~~~~~ 92 (346)
..|.++|++++|+| ++. +||+++.|+ |++|++ .+++ ....+...... .|...|.+++|+
T Consensus 42 ~~~~~~v~~~~~s~----~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 117 (425)
T 1r5m_A 42 IVKLDNIVSSTWNP----LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS 117 (425)
T ss_dssp EEECSCCSEEEECS----SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEEC
T ss_pred eeccCceEEEEECC----CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEc
Confidence 45679999999999 678 999999988 999999 7777 33333321111 146688888887
Q ss_pred EcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEeccc--
Q 019117 93 CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA-- 170 (346)
Q Consensus 93 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-- 170 (346)
|+++ +|++++.||.|++|| .+++.+..+..|...|.+++|+| ++.+|++++.|+.|++||+.+++.+..+...
T Consensus 118 --~~~~-~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 192 (425)
T 1r5m_A 118 --HDGN-SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQHFELKET 192 (425)
T ss_dssp --TTSS-EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEEEECCC--
T ss_pred --CCCC-EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEEeecccc
Confidence 8898 999999999999999 67888889999999999999999 8899999999999999999888766554311
Q ss_pred ---------------------------------------------------CCCCcceEEEEecCCCCcEEEEEecCCeE
Q 019117 171 ---------------------------------------------------GGHRNEVLSVDFHPSDIYRIASCGMDNTV 199 (346)
Q Consensus 171 ---------------------------------------------------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 199 (346)
..|...|.+++|+| ++.+|++++.|+.|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i 271 (425)
T 1r5m_A 193 GGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLLSASDDGTL 271 (425)
T ss_dssp -------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-TTTEEEEEETTSCE
T ss_pred CccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-CCCEEEEEcCCCEE
Confidence 14667778888887 77788888888888
Q ss_pred EEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCcc
Q 019117 200 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGT 278 (346)
Q Consensus 200 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 278 (346)
++||++. ...+..+..|...|.++.|+ ..++++++.|+.|++||+++++
T Consensus 272 ~i~d~~~-----------------------~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------- 321 (425)
T 1r5m_A 272 RIWHGGN-----------------------GNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNT------- 321 (425)
T ss_dssp EEECSSS-----------------------BSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTE-------
T ss_pred EEEECCC-----------------------CccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCc-------
Confidence 8888776 33456677899999999998 3399999999999999998876
Q ss_pred ccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC--------------------cceeeeee--e-eE
Q 019117 279 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP--------------------PVLIARLI--C-FS 335 (346)
Q Consensus 279 ~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~--------------------~~~~~~~~--~-~~ 335 (346)
.+..+..|...|.+++|+|++ .+|++++.||.|++||+.+++ ++..+... + .+
T Consensus 322 --~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 397 (425)
T 1r5m_A 322 --LLALSIVDGVPIFAGRISQDG--QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYI 397 (425)
T ss_dssp --EEEEEECTTCCEEEEEECTTS--SEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCE
T ss_pred --EeEecccCCccEEEEEEcCCC--CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCce
Confidence 677777888999999999999 799999999999999999876 44444433 3 78
Q ss_pred EEEEecCCCCC
Q 019117 336 LHVKYNPQSVY 346 (346)
Q Consensus 336 ~~~~~spdg~~ 346 (346)
.+++|+|+|++
T Consensus 398 ~~~~~s~~~~~ 408 (425)
T 1r5m_A 398 FDLSWNCAGNK 408 (425)
T ss_dssp EEEEECTTSSE
T ss_pred EEEEccCCCce
Confidence 99999999974
No 46
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.4e-39 Score=277.75 Aligned_cols=250 Identities=14% Similarity=0.229 Sum_probs=193.7
Q ss_pred cCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCce-----------eeeEeeeecCCCc------------cce
Q 019117 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV-----------IAALQSYVDEDKE------------ESF 86 (346)
Q Consensus 31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~-----------~~~~~~~~~~~~~------------~~v 86 (346)
.|.+.|++++|+| ++++||+|+.|+ |+||++.++.. ...+.. |. ..|
T Consensus 26 ~~~~~V~~v~~s~----~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~~~~~~~~~~~~~V 96 (447)
T 3dw8_B 26 AEADIISTVEFNH----SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQS-----HEPEFDYLKSLEIEEKI 96 (447)
T ss_dssp CGGGSEEEEEECS----SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEEC-----CCCEEEGGGTEEECCCC
T ss_pred cccCcEEEEEECC----CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccccc-----ccccccccccccccCce
Confidence 3678999999999 789999999998 99999987662 333433 54 778
Q ss_pred EEEEEEEcCCC--CcEEEEeecCCeEEEEEccCccee---------------------------------------ee-e
Q 019117 87 YTVSWACNVDG--IPFLVAGGINGIIRVIDVSNEKLH---------------------------------------KS-F 124 (346)
Q Consensus 87 ~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~---------------------------------------~~-~ 124 (346)
.+++|. |++ . +|++++.|+.|++||+.+++.. .. .
T Consensus 97 ~~l~~~--~~~~~~-~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 97 NKIRWL--PQKNAA-QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp CEEEEC--CCCSSS-EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred EEEEEc--CCCCcc-eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence 888887 776 5 8999999999999999764432 12 3
Q ss_pred ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC-CeeEEEec----ccCCCCcceEEEEecCCCC-cEEEEEecCCe
Q 019117 125 VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT-GICILIFA----GAGGHRNEVLSVDFHPSDI-YRIASCGMDNT 198 (346)
Q Consensus 125 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~----~~~~~~~~v~~~~~~~~~~-~~l~s~~~d~~ 198 (346)
.+|...|.+++|+| ++.+|++| .|+.|++||+++ ++.+..+. ...+|...|++++|+| ++ .+|++++.||.
T Consensus 174 ~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~ 250 (447)
T 3dw8_B 174 NAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSSKGT 250 (447)
T ss_dssp SCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEETTSC
T ss_pred cCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeCCCe
Confidence 67999999999999 88999998 799999999984 44444220 1126899999999999 65 99999999999
Q ss_pred EEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc------------ceEEEEec--CCEEEEEeecCeEEE
Q 019117 199 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN------------YVDCNRWL--GDFILSKSVDNEIVL 264 (346)
Q Consensus 199 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~i~~~~~~--~~~l~~~~~d~~i~i 264 (346)
|++||++..... ......+..|.. .|.+++|+ +++|++++. +.|++
T Consensus 251 i~iwd~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~i 310 (447)
T 3dw8_B 251 IRLCDMRASALC-------------------DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKV 310 (447)
T ss_dssp EEEEETTTCSSS-------------------CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEE
T ss_pred EEEEECcCCccc-------------------cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEE
Confidence 999999983310 011344555554 89999998 789999988 99999
Q ss_pred EcCCC-CCCCCCCccccccccccCCCcC---------------eeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcc
Q 019117 265 WEPKM-KEQSPGEGTADILQKYPVPECD---------------IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV 326 (346)
Q Consensus 265 wd~~~-~~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 326 (346)
||++. ++ .+..+..|... +..++|+|++ .+|++|+.||.|++||+.+++.+
T Consensus 311 wd~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~--~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 311 WDLNMENR---------PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD--SVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp EETTCCSS---------CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS--SEEEEECSTTEEEEEETTTCCEE
T ss_pred EeCCCCcc---------ccceeeccccccccccccccccccccceEEEECCCC--CEEEEeccCCEEEEEEcCCCcce
Confidence 99987 44 44555555421 3348999999 78999999999999999998754
No 47
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-40 Score=278.95 Aligned_cols=252 Identities=19% Similarity=0.305 Sum_probs=210.6
Q ss_pred cCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccC----ceeeeEeeeecCCCccceEEEEEEEcCC-CCcEEEEe
Q 019117 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG----GVIAALQSYVDEDKEESFYTVSWACNVD-GIPFLVAG 104 (346)
Q Consensus 31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l~~~ 104 (346)
.|...|++++|+| ++.+|++++.++ |++|++... .....+. .|...|.+++|+ |+ +. +|+++
T Consensus 65 ~~~~~v~~~~~s~----~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~--~~~~~-~l~s~ 132 (416)
T 2pm9_A 65 QVDSKFNDLDWSH----NNKIIAGALDNGSLELYSTNEANNAINSMARFS-----NHSSSVKTVKFN--AKQDN-VLASG 132 (416)
T ss_dssp CCSSCEEEEEECS----SSSCEEEEESSSCEEEECCSSTTSCCCEEEECC-----CSSSCCCEEEEC--SSSTT-BEEEE
T ss_pred ecCCceEEEEECC----CCCeEEEEccCCeEEEeecccccccccchhhcc-----CCccceEEEEEc--CCCCC-EEEEE
Confidence 5889999999999 788999999887 999998872 2333333 377888888886 87 55 99999
Q ss_pred ecCCeEEEEEccCcc------eee---eeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccC---C
Q 019117 105 GINGIIRVIDVSNEK------LHK---SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG---G 172 (346)
Q Consensus 105 ~~dg~i~iwd~~~~~------~~~---~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~ 172 (346)
+.||.|++||+.+++ ... .+..|...|.+++|+|+++.+|++++.|+.|++||+++++.+..+.... +
T Consensus 133 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 212 (416)
T 2pm9_A 133 GNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSG 212 (416)
T ss_dssp CSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSC
T ss_pred cCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccc
Confidence 999999999998876 333 3367999999999999448899999999999999999999988887311 1
Q ss_pred CCcceEEEEecCCCCcEEEEEecCC---eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe-ecccceEEEEe
Q 019117 173 HRNEVLSVDFHPSDIYRIASCGMDN---TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS-VHSNYVDCNRW 248 (346)
Q Consensus 173 ~~~~v~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~ 248 (346)
|...|.+++|+|++..++++++.|+ .|++||++... .+...+. .|...|.+++|
T Consensus 213 ~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~----------------------~~~~~~~~~~~~~v~~~~~ 270 (416)
T 2pm9_A 213 IKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN----------------------TPLQTLNQGHQKGILSLDW 270 (416)
T ss_dssp CCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT----------------------SCSBCCCSCCSSCEEEEEE
T ss_pred cCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC----------------------CCcEEeecCccCceeEEEe
Confidence 2789999999994457999999998 99999998731 2334455 78999999999
Q ss_pred c---CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCc
Q 019117 249 L---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP 325 (346)
Q Consensus 249 ~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~ 325 (346)
+ +++|++++.|+.|++||+++++ .+..+..|...|.+++|+|++. .+|++++.||.|++||+.+...
T Consensus 271 s~~~~~~l~s~~~dg~v~~wd~~~~~---------~~~~~~~~~~~v~~~~~s~~~~-~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 271 CHQDEHLLLSSGRDNTVLLWNPESAE---------QLSQFPARGNWCFKTKFAPEAP-DLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp CSSCSSCEEEEESSSEEEEECSSSCC---------EEEEEECSSSCCCCEEECTTCT-TEEEECCSSSEEEEEESCCCCC
T ss_pred CCCCCCeEEEEeCCCCEEEeeCCCCc---------cceeecCCCCceEEEEECCCCC-CEEEEEecCCcEEEEEccCCCC
Confidence 6 6799999999999999999876 6778888999999999999984 5899999999999999988764
Q ss_pred c
Q 019117 326 V 326 (346)
Q Consensus 326 ~ 326 (346)
.
T Consensus 341 ~ 341 (416)
T 2pm9_A 341 T 341 (416)
T ss_dssp S
T ss_pred C
Confidence 3
No 48
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=7.2e-38 Score=270.79 Aligned_cols=267 Identities=18% Similarity=0.284 Sum_probs=227.8
Q ss_pred ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (346)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (346)
..+....+.+|.+.|++++|+| ++ +|++++.|+ |++||+.+++....+.. |...|.++++.+.+++. +
T Consensus 151 ~~~~~~~~~~h~~~V~~l~~~~----~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~-----h~~~v~~l~~~~~~~~~-~ 219 (464)
T 3v7d_B 151 NKKFLLQLSGHDGGVWALKYAH----GG-ILVSGSTDRTVRVWDIKKGCCTHVFEG-----HNSTVRCLDIVEYKNIK-Y 219 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEECS----TT-EEEEEETTSCEEEEETTTTEEEEEECC-----CSSCEEEEEEEESSSCE-E
T ss_pred CCcEEEEEeCCCcCEEEEEEcC----CC-EEEEEeCCCCEEEEECCCCcEEEEECC-----CCCccEEEEEecCCCCC-E
Confidence 3456778889999999999998 44 899999888 99999998887766653 78899999999878888 9
Q ss_pred EEEeecCCeEEEEEccCcce-----------------------eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEe
Q 019117 101 LVAGGINGIIRVIDVSNEKL-----------------------HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 157 (346)
Q Consensus 101 l~~~~~dg~i~iwd~~~~~~-----------------------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 157 (346)
|++|+.||.|++||+.+++. +..+.+|...|.++. + ++.++++++.|+.|++||
T Consensus 220 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~~i~vwd 296 (464)
T 3v7d_B 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNTLIVWD 296 (464)
T ss_dssp EEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--E-ETTEEEEEETTSCEEEEE
T ss_pred EEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--C-CCCEEEEEeCCCeEEEEE
Confidence 99999999999999987652 456778888888874 4 678999999999999999
Q ss_pred cCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe
Q 019117 158 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 237 (346)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (346)
+++++.+..+. +|...|.+++|+| ++.++++++.||.|++||+++ ...+..+.
T Consensus 297 ~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~-----------------------~~~~~~~~ 349 (464)
T 3v7d_B 297 VAQMKCLYILS---GHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLEN-----------------------GELMYTLQ 349 (464)
T ss_dssp TTTTEEEEEEC---CCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTT-----------------------TEEEEEEC
T ss_pred CCCCcEEEEec---CCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-----------------------CcEEEEEe
Confidence 99999999998 7999999999999 899999999999999999988 44677888
Q ss_pred ecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEE
Q 019117 238 VHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV 317 (346)
Q Consensus 238 ~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~i 317 (346)
.|...|.++.|+++++++++.||.|++||+.+.+ ..... .+...+..++|++++ .+|++++ ||.|++
T Consensus 350 ~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~---------~~~~~-~~~~~~~~~~~~~~~--~~l~~~~-dg~i~i 416 (464)
T 3v7d_B 350 GHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS---------RKFSY-HHTNLSAITTFYVSD--NILVSGS-ENQFNI 416 (464)
T ss_dssp CCSSCEEEEEECSSEEEEEETTSEEEEEETTTCC---------EEEEE-ECTTCCCEEEEEECS--SEEEEEE-TTEEEE
T ss_pred CCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCc---------eeeee-cCCCCccEEEEEeCC--CEEEEec-CCeEEE
Confidence 9999999999999999999999999999998765 22222 245577889999999 6888888 899999
Q ss_pred EEcCCCCccee--eeeeeeEEEEEecC
Q 019117 318 WELQSSPPVLI--ARLICFSLHVKYNP 342 (346)
Q Consensus 318 wd~~~~~~~~~--~~~~~~~~~~~~sp 342 (346)
||+.+++.+.. ......+.+++|++
T Consensus 417 wd~~~g~~~~~~~~~~~~~v~~v~~~~ 443 (464)
T 3v7d_B 417 YNLRSGKLVHANILKDADQIWSVNFKG 443 (464)
T ss_dssp EETTTCCEEESCTTTTCSEEEEEEEET
T ss_pred EECCCCcEEehhhccCCCcEEEEEecC
Confidence 99999987653 34456688898874
No 49
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-38 Score=266.67 Aligned_cols=260 Identities=20% Similarity=0.302 Sum_probs=212.2
Q ss_pred eeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEecc--CceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117 25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE--GGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (346)
Q Consensus 25 ~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (346)
+...+.+|.++|++++|+| ++.+||+++.|+ |++|++.. ......+. .|...|.+++|+...++. +|
T Consensus 3 ~~~~~~~h~~~v~~~~~s~----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~-~l 72 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDY----YGKRLATCSSDKTIKIFEVEGETHKLIDTLT-----GHEGPVWRVDWAHPKFGT-IL 72 (379)
T ss_dssp --CCEEECCCCEEEEEECS----SSSEEEEEETTSCEEEEEEETTEEEEEEEEC-----CCSSCEEEEEECCGGGCS-EE
T ss_pred ccEEecCCcccEEEEEEcC----CCCEEEEEECCCcEEEEecCCCcceeeeEec-----CCCCcEEEEEeCCCCCCC-EE
Confidence 4567899999999999999 789999999888 99999873 33333333 378889999987433377 99
Q ss_pred EEeecCCeEEEEEccCcc--eeeeeccCCCceEEEEEeCCC--CceEEEeeCCCCEEEEecCCCee--EEEecccCCCCc
Q 019117 102 VAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLK--PSLVVSASKDESVRLWNVQTGIC--ILIFAGAGGHRN 175 (346)
Q Consensus 102 ~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~ 175 (346)
++++.||.|++||+.+++ .+..+..|...|.+++|+| + +.+|++++.|+.|++||++.+.. ...+. .|..
T Consensus 73 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~~~~ 148 (379)
T 3jrp_A 73 ASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIID---AHAI 148 (379)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE---CCTT
T ss_pred EEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEec---CCCC
Confidence 999999999999999987 7778888999999999999 6 88999999999999999988733 33444 6899
Q ss_pred ceEEEEecCC------------CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce
Q 019117 176 EVLSVDFHPS------------DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV 243 (346)
Q Consensus 176 ~v~~~~~~~~------------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 243 (346)
.|.+++|+|. ++.++++++.|+.|++||++.... .......+..|...|
T Consensus 149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------------------~~~~~~~~~~h~~~v 209 (379)
T 3jrp_A 149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-------------------TYVLESTLEGHSDWV 209 (379)
T ss_dssp CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT-------------------EEEEEEEECCCSSCE
T ss_pred ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc-------------------ceeeEEEEecccCcE
Confidence 9999999984 488999999999999999987321 122445677899999
Q ss_pred EEEEec-----CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117 244 DCNRWL-----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (346)
Q Consensus 244 ~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw 318 (346)
.+++|+ +++|++++.||.|++||+++..... ...+.....+...|.+++|+|++ .+|++++.||.|++|
T Consensus 210 ~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~~~dg~i~iw 283 (379)
T 3jrp_A 210 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW----KKTLLKEEKFPDVLWRASWSLSG--NVLALSGGDNKVTLW 283 (379)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCC----EEEESSSSCCSSCEEEEEECSSS--CCEEEEESSSSEEEE
T ss_pred eEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccc----eeeeeccccCCCcEEEEEEcCCC--CEEEEecCCCcEEEE
Confidence 999998 3689999999999999998864210 11233334477899999999999 789999999999999
Q ss_pred EcCCC
Q 019117 319 ELQSS 323 (346)
Q Consensus 319 d~~~~ 323 (346)
++..+
T Consensus 284 ~~~~~ 288 (379)
T 3jrp_A 284 KENLE 288 (379)
T ss_dssp EEEET
T ss_pred eCCCC
Confidence 99854
No 50
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5e-38 Score=268.35 Aligned_cols=268 Identities=12% Similarity=0.103 Sum_probs=214.4
Q ss_pred cccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (346)
Q Consensus 29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 107 (346)
+..| ..+....|+| ++++||+++.++ |++||+.++.....+. .|...|.+++|+ |+++ +|++++.|
T Consensus 94 ~~~~-~~~~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~h~~~v~~~~~~--~~~~-~l~s~s~d 160 (420)
T 3vl1_A 94 LKRA-DYTAVDTAKL----QMRRFILGTTEGDIKVLDSNFNLQREIDQ-----AHVSEITKLKFF--PSGE-ALISSSQD 160 (420)
T ss_dssp SCSC-CEEEEEEECS----SSCEEEEEETTSCEEEECTTSCEEEEETT-----SSSSCEEEEEEC--TTSS-EEEEEETT
T ss_pred EecC-CceEEEEEec----CCCEEEEEECCCCEEEEeCCCcceeeecc-----cccCccEEEEEC--CCCC-EEEEEeCC
Confidence 3444 3344456777 789999999988 9999988776655433 378889888887 8898 99999999
Q ss_pred CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE------
Q 019117 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD------ 181 (346)
Q Consensus 108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~------ 181 (346)
+.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.|++|++||+++++.+..+.....+...+.+++
T Consensus 161 ~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 239 (420)
T 3vl1_A 161 MQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTD 239 (420)
T ss_dssp SEEEEEETTTCCCCEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCC
T ss_pred CeEEEEeCCCCcCceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCc
Confidence 9999999999999999999999999999999 889999999999999999999999988874333445555554
Q ss_pred ---------------ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEE-EeecccceEE
Q 019117 182 ---------------FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI-ASVHSNYVDC 245 (346)
Q Consensus 182 ---------------~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~ 245 (346)
|+| ++.+|++++.||.|++||++... .... ...|...|.+
T Consensus 240 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~-----------------------~~~~~~~~~~~~v~~ 295 (420)
T 3vl1_A 240 RQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKE-----------------------QTIQLPSKFTCSCNS 295 (420)
T ss_dssp SSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTTCC-----------------------EEEEECCTTSSCEEE
T ss_pred ceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEECCCCc-----------------------eeEEcccccCCCcee
Confidence 567 88899999999999999998832 2222 3357889999
Q ss_pred EEec--CC-EEEEEeecCeEEEEcCCCCCCCCCCccccccccccC-CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117 246 NRWL--GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (346)
Q Consensus 246 ~~~~--~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~ 321 (346)
++|+ +. +|++++.||.|++||+++++. ++..+.. |...|.++. .+++ .+|++++.||.|++|++.
T Consensus 296 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~--------~~~~~~~~~~~~v~~~~-~~~~--~~l~s~~~d~~v~iw~~~ 364 (420)
T 3vl1_A 296 LTVDGNNANYIYAGYENGMLAQWDLRSPEC--------PVGEFLINEGTPINNVY-FAAG--ALFVSSGFDTSIKLDIIS 364 (420)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCTTS--------CSEEEEESTTSCEEEEE-EETT--EEEEEETTTEEEEEEEEC
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEEcCCCcC--------chhhhhccCCCCceEEE-eCCC--CEEEEecCCccEEEEecc
Confidence 9998 55 999999999999999998752 3555555 566777774 4566 699999999999999998
Q ss_pred CCC----------cceeeeeeeeEEEEEecCCCC
Q 019117 322 SSP----------PVLIARLICFSLHVKYNPQSV 345 (346)
Q Consensus 322 ~~~----------~~~~~~~~~~~~~~~~spdg~ 345 (346)
+.+ +.......+.+.+++|+|||+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 398 (420)
T 3vl1_A 365 DPESERPAIEFETPTFLVSNDDAVSQFCYVSDDE 398 (420)
T ss_dssp CTTCCSCEECTTSCEEECCSSCCCCEEEEECCSS
T ss_pred CCCCCccceeccCccEEccCCcceEEEEEccCCC
Confidence 742 122233345578899999986
No 51
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.2e-38 Score=264.44 Aligned_cols=260 Identities=16% Similarity=0.154 Sum_probs=210.9
Q ss_pred cccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc--eeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG--VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (346)
Q Consensus 29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 105 (346)
+..|.++|++++|+| ++++||+++.++ |++||+.+++ ....+.. |...|.+++|. |+++ +|++++
T Consensus 4 ~~~~~~~i~~~~~s~----~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-----h~~~v~~~~~~--~~~~-~l~~~~ 71 (372)
T 1k8k_C 4 HSFLVEPISCHAWNK----DRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-----HNGQVTGVDWA--PDSN-RIVTCG 71 (372)
T ss_dssp EESCSSCCCEEEECT----TSSEEEEECSSSEEEEEEEETTEEEEEEEEEC-----CSSCEEEEEEE--TTTT-EEEEEE
T ss_pred ecccCCCeEEEEECC----CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecC-----CCCcccEEEEe--CCCC-EEEEEc
Confidence 355999999999999 789999998888 9999998876 5555543 77889888887 8888 999999
Q ss_pred cCCeEEEEEccCcceeee--eccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee---EEEecccCCCCcceEEE
Q 019117 106 INGIIRVIDVSNEKLHKS--FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC---ILIFAGAGGHRNEVLSV 180 (346)
Q Consensus 106 ~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~ 180 (346)
.||.|++||+.+++.... +..|...|.+++|+| ++.+|++++.|+.|++||++.++. ...+. ..|...|.++
T Consensus 72 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~--~~~~~~i~~~ 148 (372)
T 1k8k_C 72 TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIK--KPIRSTVLSL 148 (372)
T ss_dssp TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEEC--TTCCSCEEEE
T ss_pred CCCeEEEEECCCCeeeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeee--cccCCCeeEE
Confidence 999999999988875443 467899999999999 889999999999999999988763 23332 2688999999
Q ss_pred EecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCC-CCccceeceEEEeecccceEEEEec--CCEEEEEe
Q 019117 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF-PTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS 257 (346)
Q Consensus 181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~ 257 (346)
+|+| ++.++++++.|+.|++||++......... .... ........+..+..|...|.++.|+ +++|++++
T Consensus 149 ~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 149 DWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPA------PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp EECT-TSSEEEEEETTSCEEEEECCCTTTSCCCC------CBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred EEcC-CCCEEEEEcCCCCEEEEEccccccccccc------ccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe
Confidence 9999 88999999999999999986422110000 0000 0011134566677899999999998 77999999
Q ss_pred ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117 258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (346)
Q Consensus 258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~ 322 (346)
.|+.|++||+++++ .+..+..|...|.+++|+|++ .+|+++ .|+.|++|++.+
T Consensus 222 ~d~~i~i~d~~~~~---------~~~~~~~~~~~v~~~~~~~~~--~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 222 HDSTVCLADADKKM---------AVATLASETLPLLAVTFITES--SLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp TTTEEEEEEGGGTT---------EEEEEECSSCCEEEEEEEETT--EEEEEE-TTSSCEEEEEET
T ss_pred CCCEEEEEECCCCc---------eeEEEccCCCCeEEEEEecCC--CEEEEE-eCCeEEEEEccC
Confidence 99999999999876 677788888899999999999 677777 899999999988
No 52
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.5e-38 Score=259.69 Aligned_cols=275 Identities=15% Similarity=0.171 Sum_probs=215.6
Q ss_pred cceeeeccccccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccce
Q 019117 8 CEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESF 86 (346)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v 86 (346)
....+|.+.........+...+++|...|.+++|+| ++++|++++.|+ |++|+............ +...+
T Consensus 61 ~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~----dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~-----~~~~~ 131 (340)
T 4aow_A 61 KTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS----DGQFALSGSWDGTLRLWDLTTGTTTRRFVG-----HTKDV 131 (340)
T ss_dssp SCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT----TSSEEEEEETTSEEEEEETTTTEEEEEEEC-----CSSCE
T ss_pred CeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC----CCCEEEEEcccccceEEeecccceeeeecC-----CCCce
Confidence 345666666544455566778899999999999999 789999999999 99999877766555443 44445
Q ss_pred EEEEEEEcCCCCcEEEEeecCCeEEEEEccCcce-eeeeccCCCceEEEEEeCCC-CceEEEeeCCCCEEEEecCCCeeE
Q 019117 87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL-HKSFVGHGDSINEIRTQPLK-PSLVVSASKDESVRLWNVQTGICI 164 (346)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~ 164 (346)
....+ ++++. +|++++.|+.+++||+..... .....+|...+..++|++.. ..++++++.|+.|++||+++++.+
T Consensus 132 ~~~~~--~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~ 208 (340)
T 4aow_A 132 LSVAF--SSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK 208 (340)
T ss_dssp EEEEE--CTTSS-CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEE
T ss_pred eEEEE--eecCc-cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCcee
Confidence 54544 48887 999999999999999876543 44567799999999999843 346789999999999999999999
Q ss_pred EEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE
Q 019117 165 LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD 244 (346)
Q Consensus 165 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (346)
..+. +|...|++++|+| ++.+|++++.|+.|++||++.. ..+..+. +...|.
T Consensus 209 ~~~~---~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~-----------------------~~~~~~~-~~~~v~ 260 (340)
T 4aow_A 209 TNHI---GHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEG-----------------------KHLYTLD-GGDIIN 260 (340)
T ss_dssp EEEC---CCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTT-----------------------EEEEEEE-CSSCEE
T ss_pred eEec---CCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccC-----------------------ceeeeec-CCceEE
Confidence 9988 7999999999999 8999999999999999999983 3344444 456799
Q ss_pred EEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117 245 CNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (346)
Q Consensus 245 ~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (346)
++.|+ +..+++++.|+.|++||+++..................|...|++++|+|++ ++|++|+.||.|+|||+++|
T Consensus 261 ~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg--~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 261 ALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG--QTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp EEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTS--SEEEEEETTSCEEEEEEEC-
T ss_pred eeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCC--CEEEEEeCCCEEEEEeCCCc
Confidence 99998 6678888899999999998765221111111233445688899999999999 79999999999999999998
Q ss_pred C
Q 019117 324 P 324 (346)
Q Consensus 324 ~ 324 (346)
+
T Consensus 339 t 339 (340)
T 4aow_A 339 T 339 (340)
T ss_dssp -
T ss_pred C
Confidence 5
No 53
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.1e-38 Score=262.66 Aligned_cols=270 Identities=13% Similarity=0.199 Sum_probs=215.6
Q ss_pred eecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCcee-eeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI-AALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (346)
Q Consensus 27 ~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 104 (346)
..+.+|.+.|++++|+| ++.+||+++.|+ |++|++.++... .....+ ..|...|.+++|....++. +|+++
T Consensus 5 ~~~~gH~~~v~~~~~~~----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~d~~-~l~s~ 77 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDF----YGRHVATCSSDQHIKVFKLDKDTSNWELSDSW--RAHDSSIVAIDWASPEYGR-IIASA 77 (351)
T ss_dssp CEECCCSSCEEEEEECS----SSSEEEEEETTSEEEEEEECSSSCCEEEEEEE--ECCSSCEEEEEECCGGGCS-EEEEE
T ss_pred ccCcccccceeEEEEcC----CCCEEEEeeCCCeEEEEECCCCCCcceeccee--ccCCCcEEEEEEcCCCCCC-EEEEE
Confidence 34589999999999999 789999999998 999999876432 222222 2378889999887322577 99999
Q ss_pred ecCCeEEEEEccCc---------ceeeeeccCCCceEEEEEeCCC--CceEEEeeCCCCEEEEecCCCeeEEEecc----
Q 019117 105 GINGIIRVIDVSNE---------KLHKSFVGHGDSINEIRTQPLK--PSLVVSASKDESVRLWNVQTGICILIFAG---- 169 (346)
Q Consensus 105 ~~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---- 169 (346)
+.||.|++||+.++ +.+..+..|...|.+++|+| + +.+|++++.||.|++||+++++.+..+..
T Consensus 78 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 156 (351)
T 3f3f_A 78 SYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM 156 (351)
T ss_dssp ETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE
T ss_pred cCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhccccccccc
Confidence 99999999999887 55778889999999999999 7 88999999999999999988765443321
Q ss_pred ------cCCCCcceEEEEecCC--CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc
Q 019117 170 ------AGGHRNEVLSVDFHPS--DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241 (346)
Q Consensus 170 ------~~~~~~~v~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (346)
...|...+.+++|+|. ++.++++++.++.+.+|+..... ...+..+..|..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~h~~ 215 (351)
T 3f3f_A 157 KVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK---------------------LHVAAKLPGHKS 215 (351)
T ss_dssp ESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC---------------------EEEEEECCCCCS
T ss_pred cccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc---------------------eeeeeecCCCCc
Confidence 1247789999999993 38899999999999888776622 123556778999
Q ss_pred ceEEEEec--C----CEEEEEeecCeEEEEcCCCCCCCCC-------------------------------------Ccc
Q 019117 242 YVDCNRWL--G----DFILSKSVDNEIVLWEPKMKEQSPG-------------------------------------EGT 278 (346)
Q Consensus 242 ~i~~~~~~--~----~~l~~~~~d~~i~iwd~~~~~~~~~-------------------------------------~~~ 278 (346)
.|.+++|+ + ++|++++.||.|++||++....... ...
T Consensus 216 ~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (351)
T 3f3f_A 216 LIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ 295 (351)
T ss_dssp CEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEE
T ss_pred ceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccccc
Confidence 99999999 4 6899999999999999987532110 011
Q ss_pred ccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce
Q 019117 279 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL 327 (346)
Q Consensus 279 ~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 327 (346)
...+..+.+|...|++++|+|++ .+|++++.||.|++||+.+++...
T Consensus 296 ~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~~~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 296 VELLSEHDDHNGEVWSVSWNLTG--TILSSAGDDGKVRLWKATYSNEFK 342 (351)
T ss_dssp EEEEEEECTTSSCEEEEEECSSS--CCEEEEETTSCEEEEEECTTSCEE
T ss_pred ccEEEEEecccccEEEEEEcCCC--CEEEEecCCCcEEEEecCcCcchh
Confidence 23566778899999999999999 799999999999999999876544
No 54
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=5.3e-39 Score=275.29 Aligned_cols=290 Identities=14% Similarity=0.136 Sum_probs=208.5
Q ss_pred ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcC-CCCc
Q 019117 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV-DGIP 99 (346)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~ 99 (346)
.+++.....+|...|+||+|+|. ++.+||+|+.|+ |+|||+.+++....+.. ..|...|.+++|+ | ++.
T Consensus 108 ~~~~~~~~~~~~~~V~~l~~~P~---~~~~lasGs~dg~i~lWd~~~~~~~~~~~~---~gH~~~V~~l~f~--p~~~~- 178 (435)
T 4e54_B 108 SYRILQKAAPFDRRATSLAWHPT---HPSTVAVGSKGGDIMLWNFGIKDKPTFIKG---IGAGGSITGLKFN--PLNTN- 178 (435)
T ss_dssp TTTSCCEEEECSSCEEEEEECSS---CTTCEEEEETTSCEEEECSSCCSCCEEECC---CSSSCCCCEEEEC--SSCTT-
T ss_pred ceeecccCCCCCCCEEEEEEeCC---CCCEEEEEeCCCEEEEEECCCCCceeEEEc---cCCCCCEEEEEEe--CCCCC-
Confidence 44555666789999999999993 357999999998 99999887765444332 3488899998887 6 455
Q ss_pred EEEEeecCCeEEEEEccCcceeeeec--cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcce
Q 019117 100 FLVAGGINGIIRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV 177 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 177 (346)
+|++|+.||+|++||++++....... .+...+.+++|+| ++.+|++|+.||.|++||++ ++.+..+. +|...|
T Consensus 179 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~-~~~~~~~~---~h~~~v 253 (435)
T 4e54_B 179 QFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMD-GKELWNLR---MHKKKV 253 (435)
T ss_dssp EEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESS-SCBCCCSB---CCSSCE
T ss_pred EEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccC-cceeEEEe---cccceE
Confidence 99999999999999998765433333 2345678999999 89999999999999999986 45566666 799999
Q ss_pred EEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEE
Q 019117 178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS 255 (346)
Q Consensus 178 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~ 255 (346)
++++|+|.+..++++++.|+.|++||++.... .........|...|++++|+ +++|++
T Consensus 254 ~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~--------------------~~~~~~~~~h~~~v~~~~~spdg~~l~s 313 (435)
T 4e54_B 254 THVALNPCCDWFLATASVDQTVKIWDLRQVRG--------------------KASFLYSLPHRHPVNAACFSPDGARLLT 313 (435)
T ss_dssp EEEEECTTCSSEEEEEETTSBCCEEETTTCCS--------------------SSCCSBCCBCSSCEEECCBCTTSSEEEE
T ss_pred EeeeecCCCceEEEEecCcceeeEEecccccc--------------------cceEEEeeeccccccceeECCCCCeeEE
Confidence 99999995567899999999999999987331 11222345689999999998 789999
Q ss_pred EeecCeEEEEcCCCCCCCCCC-cc-------ccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce
Q 019117 256 KSVDNEIVLWEPKMKEQSPGE-GT-------ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL 327 (346)
Q Consensus 256 ~~~d~~i~iwd~~~~~~~~~~-~~-------~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 327 (346)
++.|++|++||+.+++..... .+ ...+.....+...+..+.+++++. .+++++..++.|++||..+++.+.
T Consensus 314 ~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~i~iwd~~~g~~~~ 392 (435)
T 4e54_B 314 TDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPN-FKSCTPYELRTIDVFDGNSGKMMC 392 (435)
T ss_dssp EESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTT-SCCSSTTCCCCEEEECSSSCCEEE
T ss_pred EcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCC-eEEEEecCCCEEEEEECCCCcEEE
Confidence 999999999999887531100 00 000000001122333344444442 122233345689999999998655
Q ss_pred eee--eeeeEEEE-EecCCCCC
Q 019117 328 IAR--LICFSLHV-KYNPQSVY 346 (346)
Q Consensus 328 ~~~--~~~~~~~~-~~spdg~~ 346 (346)
... ....+.++ +|+|||++
T Consensus 393 ~l~~~~~~~v~s~~~fspdg~~ 414 (435)
T 4e54_B 393 QLYDPESSGISSLNEFNPMGDT 414 (435)
T ss_dssp EECCSSCCCCCCEEEECTTSSC
T ss_pred EEeCCCCCcEEEEEEECCCCCE
Confidence 432 23345665 79999975
No 55
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.9e-37 Score=265.52 Aligned_cols=263 Identities=17% Similarity=0.314 Sum_probs=228.5
Q ss_pred ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (346)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (346)
..+....+.+|.+.|.+++|++ .++++++.|+ |++||+.+++.+..+.. |...|.++++. ++ .
T Consensus 148 ~~~~~~~~~~h~~~v~~~~~~~------~~l~s~~~dg~i~vwd~~~~~~~~~~~~-----h~~~v~~~~~~----~~-~ 211 (445)
T 2ovr_B 148 TGKCLRTLVGHTGGVWSSQMRD------NIIISGSTDRTLKVWNAETGECIHTLYG-----HTSTVRCMHLH----EK-R 211 (445)
T ss_dssp TCCEEEECCCCSSCEEEEEEET------TEEEEEETTSCEEEEETTTTEEEEEECC-----CSSCEEEEEEE----TT-E
T ss_pred CCcEEEEEcCCCCCEEEEEecC------CEEEEEeCCCeEEEEECCcCcEEEEECC-----CCCcEEEEEec----CC-E
Confidence 3456778899999999999975 6999999988 99999999887776653 67788888774 44 8
Q ss_pred EEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180 (346)
Q Consensus 101 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 180 (346)
+++|+.||.|++||+.+++.+..+.+|...|.+++| ++..+++|+.||.|++||+++++.+..+. +|...|.++
T Consensus 212 l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~ 285 (445)
T 2ovr_B 212 VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQ---GHTNRVYSL 285 (445)
T ss_dssp EEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEEEEC---CCSSCEEEE
T ss_pred EEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeEEec---CCCCceEEE
Confidence 999999999999999999999999999999999999 45789999999999999999999999998 799999999
Q ss_pred EecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecC
Q 019117 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDN 260 (346)
Q Consensus 181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~ 260 (346)
+| ++.++++++.|+.|++||+++ ...+..+..|...+.++.++++++++++.||
T Consensus 286 ~~---~~~~l~~~~~d~~i~i~d~~~-----------------------~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg 339 (445)
T 2ovr_B 286 QF---DGIHVVSGSLDTSIRVWDVET-----------------------GNCIHTLTGHQSLTSGMELKDNILVSGNADS 339 (445)
T ss_dssp EE---CSSEEEEEETTSCEEEEETTT-----------------------CCEEEEECCCCSCEEEEEEETTEEEEEETTS
T ss_pred EE---CCCEEEEEeCCCeEEEEECCC-----------------------CCEEEEEcCCcccEEEEEEeCCEEEEEeCCC
Confidence 99 467899999999999999988 3456677889999999999999999999999
Q ss_pred eEEEEcCCCCCCCCCCccccccccccC---CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee------ee
Q 019117 261 EIVLWEPKMKEQSPGEGTADILQKYPV---PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA------RL 331 (346)
Q Consensus 261 ~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~ 331 (346)
.|++||+++++ .+..+.. |...|.+++|+ + .+|++|+.||.|++||+.+++.+... ..
T Consensus 340 ~i~vwd~~~~~---------~~~~~~~~~~~~~~v~~~~~~--~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 406 (445)
T 2ovr_B 340 TVKIWDIKTGQ---------CLQTLQGPNKHQSAVTCLQFN--K--NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS 406 (445)
T ss_dssp CEEEEETTTCC---------EEEEECSTTSCSSCEEEEEEC--S--SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGG
T ss_pred eEEEEECCCCc---------EEEEEccCCCCCCCEEEEEEC--C--CEEEEEeCCCeEEEEECCCCceeeeeeccccCCC
Confidence 99999998876 4555554 77889999995 4 58999999999999999999876655 34
Q ss_pred eeeEEEEEecCCCC
Q 019117 332 ICFSLHVKYNPQSV 345 (346)
Q Consensus 332 ~~~~~~~~~spdg~ 345 (346)
.+.+.+++|+|+|.
T Consensus 407 ~~~v~~~~~s~~~~ 420 (445)
T 2ovr_B 407 GGVVWRIRASNTKL 420 (445)
T ss_dssp TCEEEEEEECSSEE
T ss_pred CceEEEEEecCCEE
Confidence 45689999999975
No 56
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1e-37 Score=264.48 Aligned_cols=280 Identities=15% Similarity=0.110 Sum_probs=218.9
Q ss_pred ceeeecccccc-ccceeeeeecccCCCceEEEEEEeecCCCc---cEEEEEcCCc-EEEEEeccCce-----eeeEeeee
Q 019117 9 EPLVGSLTPSK-KREYRVTNKLQEGKRPLYAVVFNFIDSRYF---NVFATVGGNR-VTVYQCLEGGV-----IAALQSYV 78 (346)
Q Consensus 9 ~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~---~~la~~~~~~-v~i~~~~~~~~-----~~~~~~~~ 78 (346)
...+|.+.... ...+.+...+.+|..+|++++|+|+...++ .+|++++.++ |++|++.++.. ...+..+.
T Consensus 37 ~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 116 (397)
T 1sq9_A 37 YLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLD 116 (397)
T ss_dssp EEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSC
T ss_pred EEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccc
Confidence 34444443321 223456777889999999999999211117 8999999888 99999998876 55554321
Q ss_pred cCCCccceEEEEEEEc--CCCCcE-EEEeecCCeEEEEEccC------cceee-----ee-------ccCCCceEEEEEe
Q 019117 79 DEDKEESFYTVSWACN--VDGIPF-LVAGGINGIIRVIDVSN------EKLHK-----SF-------VGHGDSINEIRTQ 137 (346)
Q Consensus 79 ~~~~~~~v~~~~~~~~--~~~~~~-l~~~~~dg~i~iwd~~~------~~~~~-----~~-------~~~~~~v~~~~~~ 137 (346)
.......|.+++|... |+++ + |++++.||.|++||+.+ ++.+. .+ ..|...|.+++|+
T Consensus 117 ~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 195 (397)
T 1sq9_A 117 SDMKKHSFWALKWGASNDRLLS-HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS 195 (397)
T ss_dssp TTGGGSCEEEEEEECCC----C-EEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC
T ss_pred cccCCCcEEEEEEeeccCCCCc-eEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEEC
Confidence 1000477888877633 6787 8 99999999999999998 76666 66 4488999999999
Q ss_pred CCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCC---CcceEEEEecCCCCcEEEEEecC---CeEEEEEccccceee
Q 019117 138 PLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGH---RNEVLSVDFHPSDIYRIASCGMD---NTVKIWSMKEFWTYV 211 (346)
Q Consensus 138 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~ 211 (346)
| ++ +|++++.|+.|++||+++++.+..+....+| ...|.+++|+| ++.+|++++.| +.|++||+++.
T Consensus 196 ~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~d~~~~---- 268 (397)
T 1sq9_A 196 E-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFG---- 268 (397)
T ss_dssp T-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTC----
T ss_pred C-Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECC-CCCEEEEEecCCCCceEEEEECCCC----
Confidence 9 77 9999999999999999999999998821118 99999999999 89999999999 99999999883
Q ss_pred eeceeecCCCCCCCCccceeceEEEee-------------cccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCC
Q 019117 212 EKSFTWTDLPSKFPTKYVQFPVFIASV-------------HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE 276 (346)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~ 276 (346)
..+..+.. |...|.++.|+ +++|++++.|+.|++||+.+++
T Consensus 269 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----- 324 (397)
T 1sq9_A 269 -------------------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE----- 324 (397)
T ss_dssp -------------------CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----
T ss_pred -------------------cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc-----
Confidence 34455555 89999999998 8899999999999999998876
Q ss_pred cccccccccc------CC---------------CcCeeEEEEeecCC--------cceEEEEcCCCcEEEEEcCCCC
Q 019117 277 GTADILQKYP------VP---------------ECDIWFIKFSCDFH--------YNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 277 ~~~~~~~~~~------~~---------------~~~v~~~~~s~~~~--------~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
.+..+. .| ...|.+++|+|+++ ..+|++++.||.|++|++.+++
T Consensus 325 ----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 325 ----RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp ----EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ----eeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 455555 55 88999999999972 1389999999999999998863
No 57
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-38 Score=269.00 Aligned_cols=270 Identities=11% Similarity=0.083 Sum_probs=208.4
Q ss_pred cceeeeeec-ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEecc---CceeeeEeeeecCCCccceEEEEEEEcC
Q 019117 21 REYRVTNKL-QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE---GGVIAALQSYVDEDKEESFYTVSWACNV 95 (346)
Q Consensus 21 ~~~~~~~~~-~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 95 (346)
...+++..+ .+|.+.|++++|+|. ++.+||+|+.|+ |++||+.+ +........+ .|...|.+++|. |
T Consensus 50 ~~g~~~~~~~~~h~~~V~~~~~s~~---~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~---~h~~~v~~~~~~--~ 121 (437)
T 3gre_A 50 LRGKLIATLMENEPNSITSSAVSPG---ETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY---DCSSTVTQITMI--P 121 (437)
T ss_dssp CCCCEEEEECTTTTSCEEEEEEECS---SSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE---ECSSCEEEEEEC--T
T ss_pred ccceEEeeeccCCCCceEEEEECCC---CCCEEEEecCCceEEEeECcccccCcccceeeec---cCCCCEEEEEEe--C
Confidence 445667777 899999999999982 468999999998 99999887 4422212221 277889888887 8
Q ss_pred CCCcEEEEeecCCeEEEEEcc---Ccceeeeecc------------CCCceEEEE--EeCCCCceEEEeeCCCCEEEEec
Q 019117 96 DGIPFLVAGGINGIIRVIDVS---NEKLHKSFVG------------HGDSINEIR--TQPLKPSLVVSASKDESVRLWNV 158 (346)
Q Consensus 96 ~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~~l~s~~~d~~i~iwd~ 158 (346)
+++ +|++++.||.|++||+. +++....+.. +...+.++. +++ ++.+|++++.|+.|++||+
T Consensus 122 ~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~ 199 (437)
T 3gre_A 122 NFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDI 199 (437)
T ss_dssp TSS-EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEET
T ss_pred CCC-EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeC
Confidence 888 99999999999999995 5554443332 445566666 446 7889999999999999999
Q ss_pred CCCeeEEEecccCC--CCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE
Q 019117 159 QTGICILIFAGAGG--HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 236 (346)
Q Consensus 159 ~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (346)
++++.+..+. + |...|++++|+| ++.+|++++.||.|++||++. ..++..+
T Consensus 200 ~~~~~~~~~~---~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~-----------------------~~~~~~~ 252 (437)
T 3gre_A 200 RTLERLQIIE---NSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRF-----------------------NVLIRSW 252 (437)
T ss_dssp TTCCEEEEEE---CCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTT-----------------------TEEEEEE
T ss_pred CCCeeeEEEc---cCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCC-----------------------ccEEEEE
Confidence 9999999988 5 789999999999 899999999999999999998 3344555
Q ss_pred e-ecccceEEEEec------CCEEEEEeecCeEEEEcCCCCCCCCCCc-c------------ccc--cccccC--CCcCe
Q 019117 237 S-VHSNYVDCNRWL------GDFILSKSVDNEIVLWEPKMKEQSPGEG-T------------ADI--LQKYPV--PECDI 292 (346)
Q Consensus 237 ~-~~~~~i~~~~~~------~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~------------~~~--~~~~~~--~~~~v 292 (346)
. .|...|.++.|+ +.+|++++.|+.|++||+++++...... . ... ...+.+ |...|
T Consensus 253 ~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 332 (437)
T 3gre_A 253 SFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNAL 332 (437)
T ss_dssp BCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGG
T ss_pred ecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCce
Confidence 4 677789999665 3489999999999999998765211000 0 000 001223 67789
Q ss_pred eEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee
Q 019117 293 WFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR 330 (346)
Q Consensus 293 ~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (346)
++++|+ ++ .+|++|+.||.|++||+.+++....+.
T Consensus 333 ~~l~~~-~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~ 367 (437)
T 3gre_A 333 STISVS-ND--KILLTDEATSSIVMFSLNELSSSKAVI 367 (437)
T ss_dssp CCEEEE-TT--EEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred EEEEEC-Cc--eEEEecCCCCeEEEEECCCcccceEEe
Confidence 999999 66 699999999999999999987655443
No 58
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.8e-37 Score=259.99 Aligned_cols=282 Identities=12% Similarity=0.138 Sum_probs=219.0
Q ss_pred ccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEecc-Ccee-eeEeeeecCCCccceEEEEEEEc
Q 019117 18 SKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE-GGVI-AALQSYVDEDKEESFYTVSWACN 94 (346)
Q Consensus 18 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~-~~~~-~~~~~~~~~~~~~~v~~~~~~~~ 94 (346)
....+++....+.+|.+.|++++|+|+. .++.+|++++.|+ |++||+.+ +... ..+.. |...|.+++|+
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-----h~~~v~~~~~~-- 95 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPT-LPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM-----HTGPVLDVCWS-- 95 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTT-SSSEEEEEEETTSEEEEEEECTTSCEEEEEEEE-----CSSCEEEEEEC--
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCC-CCceEEEEECCCCcEEEEEcCCCCceeEEEecc-----ccCCEEEEEEC--
Confidence 3456677788889999999999999921 1168999999988 99999987 4443 33332 77889888887
Q ss_pred CCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEE--eCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCC
Q 019117 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRT--QPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGG 172 (346)
Q Consensus 95 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 172 (346)
|+++ +|++++.||.|++||+.+++.+. +..|...|.+++| +| ++.+|++++.||.|++||+++++.+..+.
T Consensus 96 ~~~~-~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---- 168 (368)
T 3mmy_A 96 DDGS-KVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQ---- 168 (368)
T ss_dssp TTSS-EEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEE----
T ss_pred cCCC-EEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEe----
Confidence 8898 99999999999999999988766 5569999999999 78 78899999999999999999999998887
Q ss_pred CCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEe--cC
Q 019117 173 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW--LG 250 (346)
Q Consensus 173 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~ 250 (346)
....+.++.+.+ ..+++++.++.+.+|+++....... .....+...+.++.+ .+
T Consensus 169 ~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~ 224 (368)
T 3mmy_A 169 LPERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFR---------------------RIESPLKHQHRCVAIFKDK 224 (368)
T ss_dssp CSSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEE---------------------ECCCSCSSCEEEEEEEECT
T ss_pred cCCCceEEEecC---CeeEEEeCCCcEEEEEeccccchhh---------------------hccccccCCCceEEEcccC
Confidence 445677777764 3688888999999999987322111 001112223333333 33
Q ss_pred C----EEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCc------------CeeEEEEeecCCcceEEEEcCCCc
Q 019117 251 D----FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC------------DIWFIKFSCDFHYNAAAIGNREGK 314 (346)
Q Consensus 251 ~----~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------------~v~~~~~s~~~~~~~l~~~~~dg~ 314 (346)
. .+++++.|+.|++||++.... ...+..+..|.. .|.+++|+|++ .+|++++.||.
T Consensus 225 ~~~~~~~~~~~~dg~i~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~s~~~dg~ 296 (368)
T 3mmy_A 225 QNKPTGFALGSIEGRVAIHYINPPNP------AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH--GTLATVGSDGR 296 (368)
T ss_dssp TSCEEEEEEEETTSEEEEEESSCSCH------HHHSEEEECSEEC----CCCEEECCEEEEEECTTT--CCEEEEETTSC
T ss_pred CCCCCeEEEecCCCcEEEEecCCCCc------cccceeeeeeecccccccccccccceEEEEEecCC--CEEEEEccCCe
Confidence 3 499999999999999987631 124455555554 79999999999 78999999999
Q ss_pred EEEEEcCCCCcceeee-eeeeEEEEEecCCCCC
Q 019117 315 IFVWELQSSPPVLIAR-LICFSLHVKYNPQSVY 346 (346)
Q Consensus 315 i~iwd~~~~~~~~~~~-~~~~~~~~~~spdg~~ 346 (346)
|++||+.+++.+..+. +...+.+++|+|||++
T Consensus 297 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 329 (368)
T 3mmy_A 297 FSFWDKDARTKLKTSEQLDQPISACCFNHNGNI 329 (368)
T ss_dssp EEEEETTTTEEEEECCCCSSCEEEEEECTTSSC
T ss_pred EEEEECCCCcEEEEecCCCCCceEEEECCCCCe
Confidence 9999999987665544 3556899999999975
No 59
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-38 Score=276.66 Aligned_cols=270 Identities=10% Similarity=0.017 Sum_probs=202.8
Q ss_pred CCCceEEEEEEeecCCC-----ccEEEE-------------------EcCCc-EEEEEeccCceeeeE-eeeecCCCccc
Q 019117 32 GKRPLYAVVFNFIDSRY-----FNVFAT-------------------VGGNR-VTVYQCLEGGVIAAL-QSYVDEDKEES 85 (346)
Q Consensus 32 h~~~v~~~~~~p~~~~~-----~~~la~-------------------~~~~~-v~i~~~~~~~~~~~~-~~~~~~~~~~~ 85 (346)
+.+.|++|+|+|+.+.. +++||+ ++.|+ |+||++.+++..... ..+ ..+...
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l--~~~~~~ 209 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTI--VHSFGE 209 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEE--EECCCS
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEE--EecCCc
Confidence 57889999999954211 156666 44566 999999876643211 111 115677
Q ss_pred eEEEEEEEc----CCCCcEEEEeecCCeEEEEEccCcce-----------eeeeccCCCceEEEEEeCCCCceEEEeeCC
Q 019117 86 FYTVSWACN----VDGIPFLVAGGINGIIRVIDVSNEKL-----------HKSFVGHGDSINEIRTQPLKPSLVVSASKD 150 (346)
Q Consensus 86 v~~~~~~~~----~~~~~~l~~~~~dg~i~iwd~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 150 (346)
|..++|++. +++. +||+++.||+|++||+.+++. ...+.+|...|++++|++ + ..|++|+.|
T Consensus 210 V~~v~wsp~~~~~~~~~-~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~lasgs~D 286 (524)
T 2j04_B 210 VWDLKWHEGCHAPHLVG-CLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TTVVCGFKN 286 (524)
T ss_dssp EEEEEECSSCCCSSSSC-EEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SEEEEEETT
T ss_pred EEEEEECCCCCCCCCCc-eEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-CeEEEEeCC
Confidence 988988843 2356 999999999999999976642 236778999999999998 4 489999999
Q ss_pred CCEEEEecCCCe-eEEEecccCCCCcceEEE--EecCCCC-cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCC
Q 019117 151 ESVRLWNVQTGI-CILIFAGAGGHRNEVLSV--DFHPSDI-YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT 226 (346)
Q Consensus 151 ~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~--~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 226 (346)
|+|++||+++++ +...+. +|...|+++ +|+| ++ .+|++++.|++|++||+++.
T Consensus 287 gtV~lWD~~~~~~~~~~~~---~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~------------------- 343 (524)
T 2j04_B 287 GFVAEFDLTDPEVPSFYDQ---VHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDI------------------- 343 (524)
T ss_dssp SEEEEEETTBCSSCSEEEE---CSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGH-------------------
T ss_pred CEEEEEECCCCCCceEEee---cccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCC-------------------
Confidence 999999998764 444566 799999999 5676 66 89999999999999999983
Q ss_pred ccceeceEEEeeccc--ceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCC
Q 019117 227 KYVQFPVFIASVHSN--YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH 302 (346)
Q Consensus 227 ~~~~~~~~~~~~~~~--~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 302 (346)
.....+..|.. .|.+++|+ ++.+++++.|++|++||++++. .+..+.+|.+.|++++|+|++
T Consensus 344 ----~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~---------~~~~l~gH~~~V~sva~Sp~g- 409 (524)
T 2j04_B 344 ----ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF---------AVHPLVSRETTITAIGVSRLH- 409 (524)
T ss_dssp ----HHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT---------CCEEEEECSSCEEEEECCSSC-
T ss_pred ----CcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc---------cceeeecCCCceEEEEeCCCC-
Confidence 23334555553 47889998 6789999999999999999865 456677899999999999999
Q ss_pred cceEEEEcCCCcEEEEEcCCCCcceeee------eeeeEEEEEecCCCC
Q 019117 303 YNAAAIGNREGKIFVWELQSSPPVLIAR------LICFSLHVKYNPQSV 345 (346)
Q Consensus 303 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~~~~~~spdg~ 345 (346)
.+|++|+.||.|++||+..+. ..... ....+.+++|+|+|+
T Consensus 410 -~~l~Sgs~Dgtv~lwd~~~~~-~~~~~~~~~~~~~~~v~~v~~sp~g~ 456 (524)
T 2j04_B 410 -PMVLAGSADGSLIITNAARRL-LHGIKNSSATQKSLRLWKWDYSIKDD 456 (524)
T ss_dssp -CBCEEEETTTEEECCBSCSST-TTCC------CCCCEEEECBCCSSSC
T ss_pred -CeEEEEECCCEEEEEechHhh-ccccccCccceeeeEEEEeccCCCCC
Confidence 689999999999999987652 22211 111356888898875
No 60
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-39 Score=273.48 Aligned_cols=269 Identities=14% Similarity=0.256 Sum_probs=220.7
Q ss_pred CCceEEEEEEeecCCCcc-EEEEE----------cCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117 33 KRPLYAVVFNFIDSRYFN-VFATV----------GGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (346)
Q Consensus 33 ~~~v~~~~~~p~~~~~~~-~la~~----------~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (346)
...|.+++|+| ++. +||++ +.|+ |++|++.++.....+..+ .+...|.+++|+ |+++ +
T Consensus 12 ~~~v~~~~~sp----~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~---~~~~~v~~~~~s--~~~~-~ 81 (416)
T 2pm9_A 12 FSRTATFAWSH----DKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL---QVDSKFNDLDWS--HNNK-I 81 (416)
T ss_dssp EEESCBCCBCS----SSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC---CCSSCEEEEEEC--SSSS-C
T ss_pred hhhcceEeeCC----CCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE---ecCCceEEEEEC--CCCC-e
Confidence 35688999999 555 99999 7777 999999877643232222 267788888886 8898 9
Q ss_pred EEEeecCCeEEEEEccC----cceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe------eEEEeccc
Q 019117 101 LVAGGINGIIRVIDVSN----EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI------CILIFAGA 170 (346)
Q Consensus 101 l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------~~~~~~~~ 170 (346)
|++++.||.|++||+.+ .+.+..+.+|...|.+++|+|+++.+|++++.|+.|++||+++++ ....+...
T Consensus 82 l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 161 (416)
T 2pm9_A 82 IAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQS 161 (416)
T ss_dssp EEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCS
T ss_pred EEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccc
Confidence 99999999999999987 457888899999999999999448999999999999999999886 44343223
Q ss_pred CCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeec------ccceE
Q 019117 171 GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH------SNYVD 244 (346)
Q Consensus 171 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~ 244 (346)
..|...|.+++|+|+++.++++++.|+.|++||++.. ..+..+..+ ...|.
T Consensus 162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-----------------------~~~~~~~~~~~~~~~~~~v~ 218 (416)
T 2pm9_A 162 MSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK-----------------------KEVIHLSYTSPNSGIKQQLS 218 (416)
T ss_dssp CCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT-----------------------EEEEEECCCCCSSCCCCCEE
T ss_pred cCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC-----------------------CcceEEeccccccccCCceE
Confidence 3689999999999944899999999999999999883 234444444 78899
Q ss_pred EEEec--C-CEEEEEeecC---eEEEEcCCCCCCCCCCcccccccccc-CCCcCeeEEEEee-cCCcceEEEEcCCCcEE
Q 019117 245 CNRWL--G-DFILSKSVDN---EIVLWEPKMKEQSPGEGTADILQKYP-VPECDIWFIKFSC-DFHYNAAAIGNREGKIF 316 (346)
Q Consensus 245 ~~~~~--~-~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~ 316 (346)
+++|+ + .++++++.|+ .|++||+++.+. .+..+. .|...|.+++|+| ++ .+|++++.||.|+
T Consensus 219 ~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~--------~~~~~~~~~~~~v~~~~~s~~~~--~~l~s~~~dg~v~ 288 (416)
T 2pm9_A 219 VVEWHPKNSTRVATATGSDNDPSILIWDLRNANT--------PLQTLNQGHQKGILSLDWCHQDE--HLLLSSGRDNTVL 288 (416)
T ss_dssp EEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS--------CSBCCCSCCSSCEEEEEECSSCS--SCEEEEESSSEEE
T ss_pred EEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC--------CcEEeecCccCceeEEEeCCCCC--CeEEEEeCCCCEE
Confidence 99998 3 5899999998 999999998642 556666 7889999999999 77 7999999999999
Q ss_pred EEEcCCCCcceeee-eeeeEEEEEecCCC
Q 019117 317 VWELQSSPPVLIAR-LICFSLHVKYNPQS 344 (346)
Q Consensus 317 iwd~~~~~~~~~~~-~~~~~~~~~~spdg 344 (346)
+||+.+++++..+. +...+.+++|+|++
T Consensus 289 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~ 317 (416)
T 2pm9_A 289 LWNPESAEQLSQFPARGNWCFKTKFAPEA 317 (416)
T ss_dssp EECSSSCCEEEEEECSSSCCCCEEECTTC
T ss_pred EeeCCCCccceeecCCCCceEEEEECCCC
Confidence 99999988766544 34568899999998
No 61
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=6.5e-37 Score=264.81 Aligned_cols=265 Identities=17% Similarity=0.297 Sum_probs=224.9
Q ss_pred eeeecccCCCce-EEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117 25 VTNKLQEGKRPL-YAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (346)
Q Consensus 25 ~~~~~~~h~~~v-~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 102 (346)
....+.+|...| .++.|+ +++|++|+.|+ |++||+.+++.+..+.. |...|.+++|. +++ +|+
T Consensus 113 ~~~~l~~h~~~v~~~~~~~------~~~l~sgs~dg~i~vwd~~~~~~~~~~~~-----h~~~V~~l~~~--~~~--~l~ 177 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQFE------DNYVITGADDKMIRVYDSINKKFLLQLSG-----HDGGVWALKYA--HGG--ILV 177 (464)
T ss_dssp EEEEEECCSSSCEEEEEEE------TTEEEEEETTSCEEEEETTTTEEEEEECC-----CSSCEEEEEEC--STT--EEE
T ss_pred ceEEEcCCCCCcEEEEEEC------CCEEEEEcCCCcEEEEECCCCcEEEEEeC-----CCcCEEEEEEc--CCC--EEE
Confidence 445788998885 666664 47999999998 99999999887777653 78889888885 666 799
Q ss_pred EeecCCeEEEEEccCcceeeeeccCCCceEEEEEeC-CCCceEEEeeCCCCEEEEecCCCee------------------
Q 019117 103 AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQP-LKPSLVVSASKDESVRLWNVQTGIC------------------ 163 (346)
Q Consensus 103 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~------------------ 163 (346)
+|+.||+|++||+.+++.+..+.+|...|.+++|++ .++.++++++.|++|++||+++++.
T Consensus 178 s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 257 (464)
T 3v7d_B 178 SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257 (464)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGG
T ss_pred EEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccC
Confidence 999999999999999999999999999999999995 1668999999999999999987653
Q ss_pred -----EEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee
Q 019117 164 -----ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 238 (346)
Q Consensus 164 -----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (346)
+..+. +|...+.++. + ++.++++++.|+.|++||+++ ...+..+..
T Consensus 258 ~~~~~~~~~~---~~~~~v~~~~--~-~~~~l~~~~~d~~i~vwd~~~-----------------------~~~~~~~~~ 308 (464)
T 3v7d_B 258 ENPYFVGVLR---GHMASVRTVS--G-HGNIVVSGSYDNTLIVWDVAQ-----------------------MKCLYILSG 308 (464)
T ss_dssp GCTTEEEEEC---CCSSCEEEEE--E-ETTEEEEEETTSCEEEEETTT-----------------------TEEEEEECC
T ss_pred CCeEEEEEcc---CccceEEEEc--C-CCCEEEEEeCCCeEEEEECCC-----------------------CcEEEEecC
Confidence 33344 6888888874 4 678999999999999999988 445677888
Q ss_pred cccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEE
Q 019117 239 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 316 (346)
Q Consensus 239 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~ 316 (346)
|...|.++.|+ ++++++++.|+.|++||+++++ .+..+.+|...|.+++|+ + .+|++++.||.|+
T Consensus 309 ~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~---------~~~~~~~h~~~v~~~~~~--~--~~l~s~s~dg~v~ 375 (464)
T 3v7d_B 309 HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE---------LMYTLQGHTALVGLLRLS--D--KFLVSAAADGSIR 375 (464)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE---------EEEEECCCSSCEEEEEEC--S--SEEEEEETTSEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---------EEEEEeCCCCcEEEEEEc--C--CEEEEEeCCCcEE
Confidence 99999999998 7899999999999999999876 778888999999999997 3 5899999999999
Q ss_pred EEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117 317 VWELQSSPPVLIARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 317 iwd~~~~~~~~~~~~~~~~~~~~~spdg~~ 346 (346)
+||+.++...........+..++|+|++++
T Consensus 376 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (464)
T 3v7d_B 376 GWDANDYSRKFSYHHTNLSAITTFYVSDNI 405 (464)
T ss_dssp EEETTTCCEEEEEECTTCCCEEEEEECSSE
T ss_pred EEECCCCceeeeecCCCCccEEEEEeCCCE
Confidence 999999876665555555777899998863
No 62
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.6e-37 Score=279.75 Aligned_cols=271 Identities=18% Similarity=0.218 Sum_probs=207.4
Q ss_pred ceeeeccccccccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceE
Q 019117 9 EPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFY 87 (346)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~ 87 (346)
....|.+.............+.+|...|.+++|+| ++++|++|+.|+ |++||+.++.....+.. |...|.
T Consensus 406 ~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~----~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~-----h~~~v~ 476 (694)
T 3dm0_A 406 SIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS----DGQFALSGSWDGELRLWDLAAGVSTRRFVG-----HTKDVL 476 (694)
T ss_dssp EEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT----TSSEEEEEETTSEEEEEETTTTEEEEEEEC-----CSSCEE
T ss_pred cEEEEEccCCCcccccccceecCCCCcEEEEEECC----CCCEEEEEeCCCcEEEEECCCCcceeEEeC-----CCCCEE
Confidence 34455554433333345567899999999999999 789999999998 99999998887776654 778888
Q ss_pred EEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeee---eccCCCceEEEEEeCCCC--ceEEEeeCCCCEEEEecCCCe
Q 019117 88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS---FVGHGDSINEIRTQPLKP--SLVVSASKDESVRLWNVQTGI 162 (346)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~ 162 (346)
+++|+ |+++ +|++++.|++|++||......... ..+|...|.+++|+| ++ ..|++++.|++|++||+++++
T Consensus 477 ~~~~s--~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~d~~v~vwd~~~~~ 552 (694)
T 3dm0_A 477 SVAFS--LDNR-QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP-NTLQPTIVSASWDKTVKVWNLSNCK 552 (694)
T ss_dssp EEEEC--TTSS-CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS-CSSSCEEEEEETTSCEEEEETTTCC
T ss_pred EEEEe--CCCC-EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC-CCCcceEEEEeCCCeEEEEECCCCc
Confidence 88876 8998 999999999999999865543322 246889999999999 44 589999999999999999999
Q ss_pred eEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccc
Q 019117 163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 242 (346)
Q Consensus 163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (346)
....+. +|.+.|++++|+| ++.+|++++.||.|++||+++.+ .+..+. +...
T Consensus 553 ~~~~~~---~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~-----------------------~~~~~~-~~~~ 604 (694)
T 3dm0_A 553 LRSTLA---GHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGK-----------------------KLYSLE-ANSV 604 (694)
T ss_dssp EEEEEC---CCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTTE-----------------------EEECCB-CSSC
T ss_pred EEEEEc---CCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCc-----------------------eEEEec-CCCc
Confidence 988888 7999999999999 89999999999999999998832 233332 3457
Q ss_pred eEEEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCccc-cc---------cccccCCCcCeeEEEEeecCCcceEEEEcC
Q 019117 243 VDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTA-DI---------LQKYPVPECDIWFIKFSCDFHYNAAAIGNR 311 (346)
Q Consensus 243 i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~---------~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~ 311 (346)
|.+++|+ ...+++++.++.|++||+.+++........ .. ......+...+++++|+|++ .+|++|+.
T Consensus 605 v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg--~~l~sgs~ 682 (694)
T 3dm0_A 605 IHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG--STLFSGYT 682 (694)
T ss_dssp EEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTS--SEEEEEET
T ss_pred EEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCC--CEEEEEcC
Confidence 8999998 445555566788999999987521100000 00 00001112247889999999 79999999
Q ss_pred CCcEEEEEcCC
Q 019117 312 EGKIFVWELQS 322 (346)
Q Consensus 312 dg~i~iwd~~~ 322 (346)
||.|++|++..
T Consensus 683 Dg~i~iW~i~~ 693 (694)
T 3dm0_A 683 DGVIRVWGIGR 693 (694)
T ss_dssp TSEEEEEEC--
T ss_pred CCeEEEEeccC
Confidence 99999999863
No 63
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.5e-37 Score=261.38 Aligned_cols=263 Identities=21% Similarity=0.346 Sum_probs=214.8
Q ss_pred ccCCCceE--EEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117 30 QEGKRPLY--AVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (346)
Q Consensus 30 ~~h~~~v~--~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 107 (346)
.+|...++ +++|++ +.+++.+.++.|++|+..++.....+.. .+...|.+++|+ |+++ +|++|+.|
T Consensus 88 ~~~~~~~~~~~~~~s~-----~~l~~~~~d~~v~lw~~~~~~~~~~~~~----~~~~~v~~v~~s--~~~~-~l~~~~~d 155 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSN-----LNVVAVALERNVYVWNADSGSVSALAET----DESTYVASVKWS--HDGS-FLSVGLGN 155 (401)
T ss_dssp TTCCCCTTCBCEEECT-----TSEEEEEETTEEEEEETTTCCEEEEEEC----CTTCCEEEEEEC--TTSS-EEEEEETT
T ss_pred CCCcCCceEEEEeecC-----CCEEEEECCCeEEEeeCCCCcEeEeeec----CCCCCEEEEEEC--CCCC-EEEEECCC
Confidence 46666544 455554 3444444444499999998887666553 267788888887 8898 99999999
Q ss_pred CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecC-CCeeEEEecccCCCCcceEEEEecCCC
Q 019117 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-TGICILIFAGAGGHRNEVLSVDFHPSD 186 (346)
Q Consensus 108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~ 186 (346)
|.|++||+.+++.+..+.+|...|.+++|++ ..|++++.||.|++||++ ....+..+. +|...|.+++|+| +
T Consensus 156 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~-~ 228 (401)
T 4aez_A 156 GLVDIYDVESQTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQ---GHSSEVCGLAWRS-D 228 (401)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEE---CCSSCEEEEEECT-T
T ss_pred CeEEEEECcCCeEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEc---CCCCCeeEEEEcC-C
Confidence 9999999999999999999999999999964 699999999999999998 456677777 7999999999999 9
Q ss_pred CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEe--ecCe
Q 019117 187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKS--VDNE 261 (346)
Q Consensus 187 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~--~d~~ 261 (346)
+.+|++++.|+.|++||++. ..++..+..|...|.+++|+ ..++++++ .|+.
T Consensus 229 ~~~l~s~~~d~~v~iwd~~~-----------------------~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~ 285 (401)
T 4aez_A 229 GLQLASGGNDNVVQIWDARS-----------------------SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ 285 (401)
T ss_dssp SSEEEEEETTSCEEEEETTC-----------------------SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCE
T ss_pred CCEEEEEeCCCeEEEccCCC-----------------------CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCE
Confidence 99999999999999999998 34566777899999999998 35777765 7999
Q ss_pred EEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEE--EcCCCcEEEEEcCCCCcceeeeee---eeEE
Q 019117 262 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI--GNREGKIFVWELQSSPPVLIARLI---CFSL 336 (346)
Q Consensus 262 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~---~~~~ 336 (346)
|++||+.+++ .+..+. +...|.+++|+|++ .++++ |+.||.|++||+.+++......+. +.+.
T Consensus 286 i~i~d~~~~~---------~~~~~~-~~~~v~~~~~s~~~--~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~ 353 (401)
T 4aez_A 286 IHFWNAATGA---------RVNTVD-AGSQVTSLIWSPHS--KEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVL 353 (401)
T ss_dssp EEEEETTTCC---------EEEEEE-CSSCEEEEEECSSS--SEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCC
T ss_pred EEEEECCCCC---------EEEEEe-CCCcEEEEEECCCC--CeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEE
Confidence 9999999876 445554 45689999999999 57777 558999999999997666555443 4588
Q ss_pred EEEecCCCCC
Q 019117 337 HVKYNPQSVY 346 (346)
Q Consensus 337 ~~~~spdg~~ 346 (346)
+++|+|||++
T Consensus 354 ~~~~s~dg~~ 363 (401)
T 4aez_A 354 YSALSPDGRI 363 (401)
T ss_dssp EEEECTTSSE
T ss_pred EEEECCCCCE
Confidence 9999999974
No 64
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1e-37 Score=261.37 Aligned_cols=264 Identities=14% Similarity=0.191 Sum_probs=211.7
Q ss_pred cCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcC-CCCcEEEEeecCC
Q 019117 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV-DGIPFLVAGGING 108 (346)
Q Consensus 31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~l~~~~~dg 108 (346)
.|...|++++|+|....++.+|++++.|+ |++||+.+++.+..+.. |...|.+++|. | ++. +|++++.||
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-----~~~~i~~~~~~--~~~~~-~l~s~~~dg 138 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVG-----HGNAINELKFH--PRDPN-LLLSVSKDH 138 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEES-----CCSCEEEEEEC--SSCTT-EEEEEETTS
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecC-----CCCcEEEEEEC--CCCCC-EEEEEeCCC
Confidence 37788999999994433378999999998 99999998887776653 77889888887 8 677 999999999
Q ss_pred eEEEEEccCcceeeee---ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEec-----------------
Q 019117 109 IIRVIDVSNEKLHKSF---VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA----------------- 168 (346)
Q Consensus 109 ~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----------------- 168 (346)
.|++||+.+++.+..+ ..|...|.+++|+| ++.+|++++.||.|++||+++++.+..+.
T Consensus 139 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (366)
T 3k26_A 139 ALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQ 217 (366)
T ss_dssp CEEEEETTTTEEEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCE
T ss_pred eEEEEEeecCeEEEEecccccccCceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccce
Confidence 9999999999988888 78999999999999 88999999999999999999876554333
Q ss_pred --------ccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc
Q 019117 169 --------GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240 (346)
Q Consensus 169 --------~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (346)
....|...|.+++|+ +.++++++.|+.|++||++........ ..........+..+..|.
T Consensus 218 ~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 285 (366)
T 3k26_A 218 KIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDK---------IKPSESNVTILGRFDYSQ 285 (366)
T ss_dssp EECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGG---------CCTTCCCEEEEEEEECSS
T ss_pred eeccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccc---------cccCCcchheeccccccC
Confidence 111388999999998 458999999999999999874321111 001111224466778899
Q ss_pred cceEEEEec----CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCC--CcCeeEEEEeecCCcceEEEEcCCCc
Q 019117 241 NYVDCNRWL----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP--ECDIWFIKFSCDFHYNAAAIGNREGK 314 (346)
Q Consensus 241 ~~i~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~ 314 (346)
..|.+++|+ +++|++++.||.|++||+.+++.. ......+..| ...|.+++|+|++ .+|++++.||.
T Consensus 286 ~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~s~~~dg~ 358 (366)
T 3k26_A 286 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH-----KAKCTTLTHHKCGAAIRQTSFSRDS--SILIAVCDDAS 358 (366)
T ss_dssp CCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG-----GCEEEEECCTTCCSCEEEEEECTTS--SEEEEEETTSE
T ss_pred CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc-----cccceEEcccccCCceEEEEeCCCC--CeEEEEeCCCE
Confidence 999999887 679999999999999999987521 1133356666 6899999999999 79999999999
Q ss_pred EEEEEcCC
Q 019117 315 IFVWELQS 322 (346)
Q Consensus 315 i~iwd~~~ 322 (346)
|++||+.+
T Consensus 359 i~iwd~~~ 366 (366)
T 3k26_A 359 IWRWDRLR 366 (366)
T ss_dssp EEEEEC--
T ss_pred EEEEEecC
Confidence 99999864
No 65
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.7e-36 Score=249.88 Aligned_cols=240 Identities=15% Similarity=0.208 Sum_probs=207.2
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 108 (346)
.+|...|.+++|+| ++++|++++.++ |++||+.+++...... + ..+...+.+++|. |+++ +|++++.||
T Consensus 94 ~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~--~~~~~~i~~~~~~--~~~~-~l~~~~~dg 163 (337)
T 1gxr_A 94 LNRDNYIRSCKLLP----DGCTLIVGGEASTLSIWDLAAPTPRIKAE-L--TSSAPACYALAIS--PDSK-VCFSCCSDG 163 (337)
T ss_dssp SCTTSBEEEEEECT----TSSEEEEEESSSEEEEEECCCC--EEEEE-E--ECSSSCEEEEEEC--TTSS-EEEEEETTS
T ss_pred cCCCCcEEEEEEcC----CCCEEEEEcCCCcEEEEECCCCCcceeee-c--ccCCCceEEEEEC--CCCC-EEEEEeCCC
Confidence 37999999999999 788999999888 9999998776322211 1 1366778888776 8888 999999999
Q ss_pred eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCc
Q 019117 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY 188 (346)
Q Consensus 109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 188 (346)
.|++||+.+++.+..+..|...|.+++|+| ++.+|++++.|+.|++||+++++.+..+. +...+.+++|+| ++.
T Consensus 164 ~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~~v~~~~~s~-~~~ 237 (337)
T 1gxr_A 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHD----FTSQIFSLGYCP-TGE 237 (337)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECT-TSS
T ss_pred cEEEEeCCCCceeeeeecccCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEeeec----CCCceEEEEECC-CCC
Confidence 999999999999999999999999999999 88999999999999999999999988886 788999999999 899
Q ss_pred EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEc
Q 019117 189 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWE 266 (346)
Q Consensus 189 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd 266 (346)
++++++.++.|++||++.. ....+..|...|.++.|+ +++|++++.||.|++||
T Consensus 238 ~l~~~~~~~~i~~~~~~~~------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 238 WLAVGMESSNVEVLHVNKP------------------------DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEEEETTSCEEEEETTSS------------------------CEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCcEEEEECCCC------------------------CeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 9999999999999999872 134566789999999998 78999999999999999
Q ss_pred CCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117 267 PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (346)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~ 321 (346)
+.+++ .+. ...|...+.+++|+|++ .+|++++.||.|++|++.
T Consensus 294 ~~~~~---------~~~-~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 294 TPYGA---------SIF-QSKESSSVLSCDISVDD--KYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp TTTCC---------EEE-EEECSSCEEEEEECTTS--CEEEEEETTSCEEEEEEE
T ss_pred CCCCe---------EEE-EecCCCcEEEEEECCCC--CEEEEecCCCeEEEEEEe
Confidence 99876 222 23467789999999999 799999999999999973
No 66
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.3e-37 Score=250.72 Aligned_cols=233 Identities=16% Similarity=0.192 Sum_probs=189.9
Q ss_pred CCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccC--cceeeeeccCCCceEEEEEeCC-CCceEEEeeCCCCEEEEe
Q 019117 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN--EKLHKSFVGHGDSINEIRTQPL-KPSLVVSASKDESVRLWN 157 (346)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd 157 (346)
.|.+.|.+++|+ |+|+ +|++|+.|++|+|||+.. .+.+..+.+|.+.|.+++|+|. ++.+|++|+.|++|++||
T Consensus 7 ~h~~~V~~~~~s--~~g~-~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 7 AHNEMIHDAVMD--YYGK-RMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp SCSSCEEEEEEC--TTSS-EEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred CCcCceEEEEEC--CCCC-EEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 478889888876 9999 999999999999999974 3677889999999999999862 378999999999999999
Q ss_pred cCCCe--eEEEecccCCCCcceEEEEecCCC--CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceece
Q 019117 158 VQTGI--CILIFAGAGGHRNEVLSVDFHPSD--IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 233 (346)
Q Consensus 158 ~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (346)
+++++ .+..+. +|...|.+++|+| + +.+|++++.|+.|++||++.... ...
T Consensus 84 ~~~~~~~~~~~~~---~h~~~v~~v~~~p-~~~g~~l~s~s~d~~v~~wd~~~~~~---------------------~~~ 138 (297)
T 2pm7_B 84 EENGRWSQIAVHA---VHSASVNSVQWAP-HEYGPMLLVASSDGKVSVVEFKENGT---------------------TSP 138 (297)
T ss_dssp BSSSCBCCCEEEC---CCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEEBCSSSC---------------------BCC
T ss_pred cCCCceEEEEEee---cCCCceeEEEeCc-CCCCcEEEEEECCCcEEEEEecCCCc---------------------eee
Confidence 98774 445555 6999999999999 5 78999999999999999987210 113
Q ss_pred EEEeecccceEEEEecC---------------CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEe
Q 019117 234 FIASVHSNYVDCNRWLG---------------DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS 298 (346)
Q Consensus 234 ~~~~~~~~~i~~~~~~~---------------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 298 (346)
..+..|...|.+++|++ ++|++++.|++|++||+++.+. .......+.+|...|.+++|+
T Consensus 139 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~-----~~~~~~~l~~H~~~V~~v~~s 213 (297)
T 2pm7_B 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-----TYVLESTLEGHSDWVRDVAWS 213 (297)
T ss_dssp EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTT-----EEEEEEEECCCSSCEEEEEEC
T ss_pred eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc-----eEEEEEEecCCCCceEEEEEC
Confidence 45678999999999983 4899999999999999986541 112455778899999999999
Q ss_pred ecCC-cceEEEEcCCCcEEEEEcCCCCcc---ee---eeeeeeEEEEEecCCCCC
Q 019117 299 CDFH-YNAAAIGNREGKIFVWELQSSPPV---LI---ARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 299 ~~~~-~~~l~~~~~dg~i~iwd~~~~~~~---~~---~~~~~~~~~~~~spdg~~ 346 (346)
|++. ..+|++++.|+.|++||+.+.... .. ..+...+.+++|+|+|++
T Consensus 214 p~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 268 (297)
T 2pm7_B 214 PTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV 268 (297)
T ss_dssp CCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCC
T ss_pred CCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCE
Confidence 9851 168999999999999999875321 11 123456899999999975
No 67
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.7e-36 Score=253.30 Aligned_cols=197 Identities=15% Similarity=0.107 Sum_probs=162.3
Q ss_pred EEEcCCCCcEEE--EeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEec
Q 019117 91 WACNVDGIPFLV--AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA 168 (346)
Q Consensus 91 ~~~~~~~~~~l~--~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 168 (346)
++|+|||+ +++ +++.|++|+|||+.+++.+..+. |...|.+++|+| ++.++++++.+ .+++|+..+++.+....
T Consensus 139 v~fSpDg~-~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~~~~~~~ 214 (365)
T 4h5i_A 139 VYISREGT-VAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGSCIARKT 214 (365)
T ss_dssp EEECTTSS-CEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCCEEEEEC
T ss_pred EEEcCCCC-EEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCcceeeee
Confidence 34569999 765 45578999999999999988886 778899999999 89999998855 56777777776654332
Q ss_pred ccCCCCcceEEEEecCCCCcEEEEEecCC----eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE
Q 019117 169 GAGGHRNEVLSVDFHPSDIYRIASCGMDN----TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD 244 (346)
Q Consensus 169 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (346)
. ..|...|.+++|+| ++.++++++.|+ .++.|++...... ......+..|...|+
T Consensus 215 ~-~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~-------------------~~~~~~~~~~~~~V~ 273 (365)
T 4h5i_A 215 D-FDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTS-------------------VLRSKQVTNRFKGIT 273 (365)
T ss_dssp C-CCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEE-------------------EEEEEEEESSCSCEE
T ss_pred c-CCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceec-------------------ceeeeeecCCCCCeE
Confidence 1 15888999999999 899999998887 6888888763211 123456778999999
Q ss_pred EEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCcccccccc-ccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117 245 CNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQK-YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (346)
Q Consensus 245 ~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~ 321 (346)
+++|+ |++|++|+.|++|+|||+.+++ ++.. +.+|...|++++|+||+ ++|++||.|++|+|||+.
T Consensus 274 ~~~~Spdg~~lasgs~D~~V~iwd~~~~~---------~~~~~~~gH~~~V~~v~fSpdg--~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 274 SMDVDMKGELAVLASNDNSIALVKLKDLS---------MSKIFKQAHSFAITEVTISPDS--TYVASVSAANTIHIIKLP 342 (365)
T ss_dssp EEEECTTSCEEEEEETTSCEEEEETTTTE---------EEEEETTSSSSCEEEEEECTTS--CEEEEEETTSEEEEEECC
T ss_pred eEEECCCCCceEEEcCCCEEEEEECCCCc---------EEEEecCcccCCEEEEEECCCC--CEEEEEeCCCeEEEEEcC
Confidence 99998 8899999999999999999876 5665 57899999999999999 799999999999999997
Q ss_pred CC
Q 019117 322 SS 323 (346)
Q Consensus 322 ~~ 323 (346)
..
T Consensus 343 ~~ 344 (365)
T 4h5i_A 343 LN 344 (365)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 68
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-36 Score=258.13 Aligned_cols=246 Identities=17% Similarity=0.269 Sum_probs=207.5
Q ss_pred cCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCe
Q 019117 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI 109 (346)
Q Consensus 31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 109 (346)
.|...|++++|+| ++.+|++++.++ |++||+.+++.+..+.. |...|.+++|. +. +|++++.||.
T Consensus 132 ~~~~~v~~v~~s~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~----~~-~l~~~~~dg~ 197 (401)
T 4aez_A 132 DESTYVASVKWSH----DGSFLSVGLGNGLVDIYDVESQTKLRTMAG-----HQARVGCLSWN----RH-VLSSGSRSGA 197 (401)
T ss_dssp CTTCCEEEEEECT----TSSEEEEEETTSCEEEEETTTCCEEEEECC-----CSSCEEEEEEE----TT-EEEEEETTSE
T ss_pred CCCCCEEEEEECC----CCCEEEEECCCCeEEEEECcCCeEEEEecC-----CCCceEEEEEC----CC-EEEEEcCCCC
Confidence 3899999999999 789999999888 99999998887776653 77888888883 44 9999999999
Q ss_pred EEEEEcc-CcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCc
Q 019117 110 IRVIDVS-NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY 188 (346)
Q Consensus 110 i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 188 (346)
|++||+. ....+..+.+|...|.+++|+| ++.+|++|+.|+.|++||+++++.+..+. .|...|.+++|+|++..
T Consensus 198 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~p~~~~ 273 (401)
T 4aez_A 198 IHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTKT---NHNAAVKAVAWCPWQSN 273 (401)
T ss_dssp EEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEEC---CCSSCCCEEEECTTSTT
T ss_pred EEEEecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEec---CCcceEEEEEECCCCCC
Confidence 9999998 4567788899999999999999 89999999999999999999999998887 79999999999996667
Q ss_pred EEEEEe--cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEE--eecCeE
Q 019117 189 RIASCG--MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK--SVDNEI 262 (346)
Q Consensus 189 ~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~--~~d~~i 262 (346)
++++++ .|+.|++||+++. ..+..+ .+...|.++.|+ +.+++++ +.||.|
T Consensus 274 ll~~~~gs~d~~i~i~d~~~~-----------------------~~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i 329 (401)
T 4aez_A 274 LLATGGGTMDKQIHFWNAATG-----------------------ARVNTV-DAGSQVTSLIWSPHSKEIMSTHGFPDNNL 329 (401)
T ss_dssp EEEEECCTTTCEEEEEETTTC-----------------------CEEEEE-ECSSCEEEEEECSSSSEEEEEECTTTCEE
T ss_pred EEEEecCCCCCEEEEEECCCC-----------------------CEEEEE-eCCCcEEEEEECCCCCeEEEEeecCCCcE
Confidence 778765 7999999999872 233344 366789999998 7788884 489999
Q ss_pred EEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcce
Q 019117 263 VLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL 327 (346)
Q Consensus 263 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 327 (346)
++||+.+++. .....+.+|...|.+++|+|++ .+|++++.||.|++|++.+++.+.
T Consensus 330 ~v~~~~~~~~-------~~~~~~~~h~~~v~~~~~s~dg--~~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 330 SIWSYSSSGL-------TKQVDIPAHDTRVLYSALSPDG--RILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp EEEEEETTEE-------EEEEEEECCSSCCCEEEECTTS--SEEEEECTTSEEEEEECCC-----
T ss_pred EEEecCCccc-------eeEEEecCCCCCEEEEEECCCC--CEEEEEeCCCcEEEEECCCCcccc
Confidence 9999987541 1344567889999999999999 799999999999999999987554
No 69
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.5e-37 Score=257.30 Aligned_cols=263 Identities=13% Similarity=0.169 Sum_probs=209.5
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc-eeeeEeeeecCCCccceEEEEEE----EcCCCCcEEEE
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG-VIAALQSYVDEDKEESFYTVSWA----CNVDGIPFLVA 103 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~l~~ 103 (346)
.+|..+|.+++|+|+.+ ++.+|++++.++ |++||+.+++ ....+. .|...|.++.|. ++|+++ +|++
T Consensus 62 ~~~~~~v~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~s~~~~-~l~~ 134 (357)
T 3i2n_A 62 IEKAKPIKCGTFGATSL-QQRYLATGDFGGNLHIWNLEAPEMPVYSVK-----GHKEIINAIDGIGGLGIGEGAP-EIVT 134 (357)
T ss_dssp EEESSCEEEEECTTCCT-TTCCEEEEETTSCEEEECTTSCSSCSEEEC-----CCSSCEEEEEEESGGGCC-CCC-EEEE
T ss_pred ecccCcEEEEEEcCCCC-CCceEEEecCCCeEEEEeCCCCCccEEEEE-----ecccceEEEeeccccccCCCcc-EEEE
Confidence 37999999999999211 268999999888 9999998877 555554 378889999874 568898 9999
Q ss_pred eecCCeEEEEEccCcc-eeeeeccCCC----ceEEEE----EeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC
Q 019117 104 GGINGIIRVIDVSNEK-LHKSFVGHGD----SINEIR----TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR 174 (346)
Q Consensus 104 ~~~dg~i~iwd~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 174 (346)
++.||.|++||+.+++ .+..+..|.+ .+.+++ |+| ++.+|++++.|+.|++||+++++...... |.
T Consensus 135 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----~~ 209 (357)
T 3i2n_A 135 GSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWETN----IK 209 (357)
T ss_dssp EETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEEEE----CS
T ss_pred EeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeeecC----CC
Confidence 9999999999999887 6777766554 899998 677 88999999999999999999998866654 88
Q ss_pred cceEEEEecCC--CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--C
Q 019117 175 NEVLSVDFHPS--DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--G 250 (346)
Q Consensus 175 ~~v~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~ 250 (346)
..|.+++|+|. ++.++++++.||.|++||++...... .........|...|.++.|+ +
T Consensus 210 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~ 271 (357)
T 3i2n_A 210 NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTK------------------GFASVSEKAHKSTVWQVRHLPQN 271 (357)
T ss_dssp SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTT------------------EEEEEEEECCSSCEEEEEEETTE
T ss_pred CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccc------------------ceeeeccCCCcCCEEEEEECCCC
Confidence 99999999984 57889999999999999998832100 11122445899999999998 4
Q ss_pred C-EEEEEeecCeEEEEcCCCCCCCCCC----------ccccccccccCCCcCeeEEEEeecCCcceEE-EEcCCCcEEEE
Q 019117 251 D-FILSKSVDNEIVLWEPKMKEQSPGE----------GTADILQKYPVPECDIWFIKFSCDFHYNAAA-IGNREGKIFVW 318 (346)
Q Consensus 251 ~-~l~~~~~d~~i~iwd~~~~~~~~~~----------~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~-~~~~dg~i~iw 318 (346)
. +|++++.||.|++||++........ .....+..+..|...|.+++|+|++ .+|+ +++.||.|++|
T Consensus 272 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~s~~~d~~i~iw 349 (357)
T 3i2n_A 272 RELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDK--RGLCVCSSFDQTVRVL 349 (357)
T ss_dssp EEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSS--TTEEEEEETTSEEEEE
T ss_pred CcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCC--CeEEEEecCCCcEEEE
Confidence 4 8999999999999999876532111 1123567788899999999999999 5677 89999999999
Q ss_pred EcCCCC
Q 019117 319 ELQSSP 324 (346)
Q Consensus 319 d~~~~~ 324 (346)
|+.+.+
T Consensus 350 ~~~~~~ 355 (357)
T 3i2n_A 350 IVTKLN 355 (357)
T ss_dssp EECC--
T ss_pred ECCCcc
Confidence 998765
No 70
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1e-36 Score=292.69 Aligned_cols=270 Identities=16% Similarity=0.264 Sum_probs=223.5
Q ss_pred eeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117 26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (346)
Q Consensus 26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 104 (346)
...+.+|.+.|++++|+| +++++|+|+.|+ |++||..+++.+..+.. |...|.+++|+ |+++ +|+++
T Consensus 608 ~~~~~~h~~~v~~~~~s~----~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~-----h~~~v~~~~~s--~~~~-~l~s~ 675 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQ----DGQRIASCGADKTLQVFKAETGEKLLDIKA-----HEDEVLCCAFS--SDDS-YIATC 675 (1249)
T ss_dssp SEEECCCSSCEEEEEECT----TSSEEEEEETTSCEEEEETTTCCEEEEECC-----CSSCEEEEEEC--TTSS-EEEEE
T ss_pred eEEEecccccEEEEEECC----CCCEEEEEeCCCeEEEEECCCCCEEEEecc-----CCCCEEEEEEe--cCCC-EEEEE
Confidence 345689999999999999 789999999998 99999999988777663 77888888876 9998 99999
Q ss_pred ecCCeEEEEEccCcceeeeeccCCCceEEEEEeCC-CCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEec
Q 019117 105 GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL-KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 183 (346)
Q Consensus 105 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 183 (346)
+.||.|++||+.+++.+..+.+|...|.+++|+|. +..++++|+.|+.|++||+++++.+..+. +|...|++++|+
T Consensus 676 ~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~---~h~~~v~~~~~s 752 (1249)
T 3sfz_A 676 SADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF---GHTNSVNHCRFS 752 (1249)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEEC---CCSSCEEEEEEC
T ss_pred eCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheec---CCCCCEEEEEEe
Confidence 99999999999999999999999999999999984 34578999999999999999999999988 799999999999
Q ss_pred CCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCC------------CC--C--C----------------Ccccee
Q 019117 184 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLP------------SK--F--P----------------TKYVQF 231 (346)
Q Consensus 184 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~------------~~--~--~----------------~~~~~~ 231 (346)
| ++.++++++.||.|++||++................ .. + . ......
T Consensus 753 p-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~ 831 (1249)
T 3sfz_A 753 P-DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGL 831 (1249)
T ss_dssp S-STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCE
T ss_pred c-CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCc
Confidence 9 899999999999999999987543222111000000 00 0 0 000001
Q ss_pred ceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEE
Q 019117 232 PVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG 309 (346)
Q Consensus 232 ~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~ 309 (346)
.......|...|.++.|+ +.++++++.|+.|++||+.++. .+..+.+|...|.+++|+|++ .+|+++
T Consensus 832 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~---------~~~~~~~h~~~v~~v~~spdg--~~l~s~ 900 (1249)
T 3sfz_A 832 LAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL---------KVADCRGHLSWVHGVMFSPDG--SSFLTA 900 (1249)
T ss_dssp EEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE---------EEEEECCCSSCEEEEEECTTS--SEEEEE
T ss_pred eeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc---------eeeecCCCccceEEEEECCCC--CEEEEE
Confidence 111223688899999998 8899999999999999999876 677888999999999999999 789999
Q ss_pred cCCCcEEEEEcCC
Q 019117 310 NREGKIFVWELQS 322 (346)
Q Consensus 310 ~~dg~i~iwd~~~ 322 (346)
+.||.|++||+.+
T Consensus 901 s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 901 SDDQTIRVWETKK 913 (1249)
T ss_dssp ETTSCEEEEEHHH
T ss_pred eCCCeEEEEEccc
Confidence 9999999999764
No 71
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=9.6e-37 Score=253.26 Aligned_cols=275 Identities=11% Similarity=0.037 Sum_probs=216.3
Q ss_pred eeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117 26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (346)
Q Consensus 26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 104 (346)
.....+|.+.|++++|+| ++.+|++++.|+ |++|++.++.......... .|...|.+++|. |+++.+|++|
T Consensus 4 ~~~~~~h~~~v~~~~~s~----~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~--~~~~~~l~~~ 75 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIP----SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFI--DNTDLQIYVG 75 (342)
T ss_dssp EECSSCCSSCEEEEEEEG----GGTEEEEEETTSEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEE--ESSSEEEEEE
T ss_pred eecccCCCCcEEEEEEcC----CCCEEEEEcCCCeEEEEEeCCCCccccceeee--ecCCceEEEEEC--CCCCcEEEEE
Confidence 344578999999999999 789999999888 9999998877222222221 377889999887 6653278999
Q ss_pred ecCCeEEEEEc-cCcceeeeecc--CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC---------CeeEEEecccCC
Q 019117 105 GINGIIRVIDV-SNEKLHKSFVG--HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT---------GICILIFAGAGG 172 (346)
Q Consensus 105 ~~dg~i~iwd~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~ 172 (346)
+.||.|++||+ .+++. ..+.+ |...|.+++|+| +..|++++.|+.|++||+++ ++++..+.
T Consensus 76 ~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---- 148 (342)
T 1yfq_A 76 TVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK---- 148 (342)
T ss_dssp ETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS----
T ss_pred cCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe----
Confidence 99999999999 77654 67788 999999999998 78999999999999999987 66666664
Q ss_pred CCcceEEEEecCCCCcEEEEEecCCeEEEEEccc-cceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--
Q 019117 173 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE-FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-- 249 (346)
Q Consensus 173 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 249 (346)
|...|.+++|+| ++ +++++.|+.|++||++. ... ........|...+.++.|+
T Consensus 149 ~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~---------------------~~~~~~~~~~~~i~~i~~~~~ 204 (342)
T 1yfq_A 149 VKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDD---------------------NGTIEESGLKYQIRDVALLPK 204 (342)
T ss_dssp SCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTTC---------------------CCEEEECSCSSCEEEEEECSG
T ss_pred eCCceEEEEecC-Cc--EEEEeCCCeEEEEECCccccc---------------------cceeeecCCCCceeEEEECCC
Confidence 889999999998 54 99999999999999987 321 1122344577889999996
Q ss_pred -CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCC---------cCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117 250 -GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE---------CDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (346)
Q Consensus 250 -~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd 319 (346)
++++++++.||.|++|+++...... .......+..|. ..|.+++|+|++ .+|++++.||.|++||
T Consensus 205 ~~~~l~~~~~dg~i~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~vwd 279 (342)
T 1yfq_A 205 EQEGYACSSIDGRVAVEFFDDQGDDY---NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH--KFLYTAGSDGIISCWN 279 (342)
T ss_dssp GGCEEEEEETTSEEEEEECCTTCCST---TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT--CCEEEEETTSCEEEEE
T ss_pred CCCEEEEEecCCcEEEEEEcCCCccc---ccccceeeecccccccccccceeEEEEEEcCCC--CEEEEecCCceEEEEc
Confidence 5799999999999999998761000 001344555554 499999999999 7899999999999999
Q ss_pred cCCCCcceeeee--eeeEEEEEecCCCCC
Q 019117 320 LQSSPPVLIARL--ICFSLHVKYNPQSVY 346 (346)
Q Consensus 320 ~~~~~~~~~~~~--~~~~~~~~~spdg~~ 346 (346)
+.+++.+..+.. ...+.+++ |+|++
T Consensus 280 ~~~~~~~~~~~~~h~~~v~~~~--~~~~~ 306 (342)
T 1yfq_A 280 LQTRKKIKNFAKFNEDSVVKIA--CSDNI 306 (342)
T ss_dssp TTTTEEEEECCCCSSSEEEEEE--ECSSE
T ss_pred CccHhHhhhhhcccCCCceEec--CCCCe
Confidence 999886655443 55678888 88864
No 72
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-38 Score=266.39 Aligned_cols=261 Identities=15% Similarity=0.132 Sum_probs=199.1
Q ss_pred cccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccC--ceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG--GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (346)
Q Consensus 29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 105 (346)
++.|.++|++++|+| ++++||+++.|+ |++|++.++ .....+. .|...|.+++|+ |+++ +|++++
T Consensus 7 ~~~~~~~v~~~~~s~----~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-----~h~~~v~~~~~s--~~~~-~l~s~s 74 (377)
T 3dwl_C 7 LHILPKPSYEHAFNS----QRTEFVTTTATNQVELYEQDGNGWKHARTFS-----DHDKIVTCVDWA--PKSN-RIVTCS 74 (377)
T ss_dssp EEECSSCCSCCEECS----SSSEEECCCSSSCBCEEEEETTEEEECCCBC-----CCSSCEEEEEEC--TTTC-CEEEEE
T ss_pred EecCCCcEEEEEECC----CCCEEEEecCCCEEEEEEccCCceEEEEEEe-----cCCceEEEEEEe--CCCC-EEEEEe
Confidence 345778999999999 789999998888 999999877 4444443 377889888887 8888 999999
Q ss_pred cCCeEEEEEccCcc---eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee---EEEecccCC-CCcceE
Q 019117 106 INGIIRVIDVSNEK---LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC---ILIFAGAGG-HRNEVL 178 (346)
Q Consensus 106 ~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~-~~~~v~ 178 (346)
.|+.|++||+.+++ ....+..|...|.+++|+| ++.+|++++.|+.|++||+++++. ...+. . |...|+
T Consensus 75 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~h~~~v~ 150 (377)
T 3dwl_C 75 QDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLK---RPLRSTIL 150 (377)
T ss_dssp TTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEEC---SSCCSCEE
T ss_pred CCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEee---cccCCCeE
Confidence 99999999999877 6677788999999999999 889999999999999999998873 55665 5 999999
Q ss_pred EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCc-cceeceEEEeecccceEEEEec--CCEEEE
Q 019117 179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK-YVQFPVFIASVHSNYVDCNRWL--GDFILS 255 (346)
Q Consensus 179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~--~~~l~~ 255 (346)
+++|+| ++.+|++++.|+.|++||++........ ........ .....+..+ .|...|.+++|+ +++|++
T Consensus 151 ~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~ 222 (377)
T 3dwl_C 151 SLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKP------EASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAY 222 (377)
T ss_dssp EEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CC------CSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEE
T ss_pred EEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCc------cccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEE
Confidence 999999 8899999999999999999752211100 00000000 113334445 899999999998 789999
Q ss_pred EeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117 256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (346)
Q Consensus 256 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~ 321 (346)
++.|+.|++||+.+++. ....+..+..|...|.+++|+|++ .+|++++.++.+ +|+..
T Consensus 223 ~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 223 AGHDSSVTIAYPSAPEQ-----PPRALITVKLSQLPLRSLLWANES--AIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EETTTEEC-CEECSTTS-----CEEECCCEECSSSCEEEEEEEETT--EEEEEESSSSEE-EECCC
T ss_pred EeCCCcEEEEECCCCCC-----cceeeEeecCCCCceEEEEEcCCC--CEEEEEcCCcEE-EEEeC
Confidence 99999999999998762 111267788899999999999999 789988877665 67665
No 73
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=5.3e-37 Score=260.40 Aligned_cols=267 Identities=16% Similarity=0.262 Sum_probs=209.2
Q ss_pred ceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCcee-eeEeeeecCCCccceEEEEEEEcC-CCCcEEEEeecCCeEE
Q 019117 35 PLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI-AALQSYVDEDKEESFYTVSWACNV-DGIPFLVAGGINGIIR 111 (346)
Q Consensus 35 ~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~l~~~~~dg~i~ 111 (346)
....++++|. ...++++++.++ |+||++...... ..+..+ ..|...|.+++|+ | ++. +|++|+.||.|+
T Consensus 36 ~~~~~~~~~~---~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~--~~h~~~V~~~~~~--p~~~~-~l~s~s~dg~v~ 107 (402)
T 2aq5_A 36 DSGFCAVNPK---FMALICEASGGGAFLVLPLGKTGRVDKNVPLV--CGHTAPVLDIAWC--PHNDN-VIASGSEDCTVM 107 (402)
T ss_dssp SSCSEEECSS---EEEEEBCCSSSCCEEEEETTCCEECCTTCCCB--CCCSSCEEEEEEC--TTCTT-EEEEEETTSEEE
T ss_pred CCCcEEECCC---eEEEEEEEcCCCEEEEEECccCCCCCCCCceE--ecCCCCEEEEEeC--CCCCC-EEEEEeCCCeEE
Confidence 4456888871 223455567677 999998654332 222211 2478899888887 8 677 999999999999
Q ss_pred EEEccCc-------ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEe--cccCCCCcceEEEEe
Q 019117 112 VIDVSNE-------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF--AGAGGHRNEVLSVDF 182 (346)
Q Consensus 112 iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~v~~~~~ 182 (346)
+||+.++ +.+..+.+|...|.+++|+|++..+|++++.|+.|++||+++++.+..+ . .|...|.+++|
T Consensus 108 vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~ 184 (402)
T 2aq5_A 108 VWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPD---VHPDTIYSVDW 184 (402)
T ss_dssp EEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTT---TCCSCEEEEEE
T ss_pred EEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecC---CCCCceEEEEE
Confidence 9999987 5678889999999999999943479999999999999999999999888 5 69999999999
Q ss_pred cCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE-eecccc-eEEEEec--CCEEEEE--
Q 019117 183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SVHSNY-VDCNRWL--GDFILSK-- 256 (346)
Q Consensus 183 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-i~~~~~~--~~~l~~~-- 256 (346)
+| ++.+|++++.|+.|++||++. ...+..+ ..|... +.++.|+ +.+|+++
T Consensus 185 ~~-~~~~l~~~~~d~~i~iwd~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 240 (402)
T 2aq5_A 185 SR-DGALICTSCRDKRVRVIEPRK-----------------------GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS 240 (402)
T ss_dssp CT-TSSCEEEEETTSEEEEEETTT-----------------------TEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC
T ss_pred CC-CCCEEEEEecCCcEEEEeCCC-----------------------CceeeeeccCCCCCcceEEEEcCCCcEEEEecc
Confidence 99 899999999999999999988 3344455 567665 8889998 6788888
Q ss_pred -eecCeEEEEcCCCCCCCCCCcccccccccc-CCCcCeeEEEEeecCCcceE-EEEcCCCcEEEEEcCCCCc-ce-eeee
Q 019117 257 -SVDNEIVLWEPKMKEQSPGEGTADILQKYP-VPECDIWFIKFSCDFHYNAA-AIGNREGKIFVWELQSSPP-VL-IARL 331 (346)
Q Consensus 257 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~l-~~~~~dg~i~iwd~~~~~~-~~-~~~~ 331 (346)
+.|+.|++||+++.+. .+.... .+...+.+++|+|++ .+| ++|+.||.|++||+.++++ +. ...+
T Consensus 241 ~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~v~~~~~s~~~--~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~ 310 (402)
T 2aq5_A 241 RMSERQVALWDTKHLEE--------PLSLQELDTSSGVLLPFFDPDT--NIVYLCGKGDSSIRYFEITSEAPFLHYLSMF 310 (402)
T ss_dssp TTCCEEEEEEETTBCSS--------CSEEEECCCCSSCEEEEEETTT--TEEEEEETTCSCEEEEEECSSTTCEEEEEEE
T ss_pred CCCCceEEEEcCccccC--------CceEEeccCCCceeEEEEcCCC--CEEEEEEcCCCeEEEEEecCCCcceEeeccc
Confidence 7899999999998652 122222 355679999999999 456 5677899999999999884 22 2222
Q ss_pred --eeeEEEEEecCCCCC
Q 019117 332 --ICFSLHVKYNPQSVY 346 (346)
Q Consensus 332 --~~~~~~~~~spdg~~ 346 (346)
...+.+++|+|++.+
T Consensus 311 ~~~~~v~~~~~sp~~~~ 327 (402)
T 2aq5_A 311 SSKESQRGMGYMPKRGL 327 (402)
T ss_dssp CCSSCCSEEEECCGGGS
T ss_pred ccCCcccceEEeccccc
Confidence 366899999999864
No 74
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.5e-36 Score=259.26 Aligned_cols=260 Identities=11% Similarity=0.068 Sum_probs=211.3
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (346)
.+....+.+|.+.|++++|+| ++++|++++.|+ |++||+.+++.+..+.. |...|.+++|+ |+++ +|
T Consensus 129 ~~~~~~~~~h~~~v~~~~~~~----~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-----h~~~v~~~~~~--~~~~-~l 196 (420)
T 3vl1_A 129 NLQREIDQAHVSEITKLKFFP----SGEALISSSQDMQLKIWSVKDGSNPRTLIG-----HRATVTDIAII--DRGR-NV 196 (420)
T ss_dssp CEEEEETTSSSSCEEEEEECT----TSSEEEEEETTSEEEEEETTTCCCCEEEEC-----CSSCEEEEEEE--TTTT-EE
T ss_pred cceeeecccccCccEEEEECC----CCCEEEEEeCCCeEEEEeCCCCcCceEEcC-----CCCcEEEEEEc--CCCC-EE
Confidence 455666789999999999999 788999999998 99999999888777754 77889888887 8898 99
Q ss_pred EEeecCCeEEEEEccCcceeeeecc---CCCceEEEE---------------------EeCCCCceEEEeeCCCCEEEEe
Q 019117 102 VAGGINGIIRVIDVSNEKLHKSFVG---HGDSINEIR---------------------TQPLKPSLVVSASKDESVRLWN 157 (346)
Q Consensus 102 ~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~---------------------~~~~~~~~l~s~~~d~~i~iwd 157 (346)
++++.|+.|++||+.+++.+..+.. |...|.+++ |+| ++.+|++++.||.|++||
T Consensus 197 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d 275 (420)
T 3vl1_A 197 LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHN 275 (420)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEE
T ss_pred EEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEE
Confidence 9999999999999999998888864 344455544 567 788999999999999999
Q ss_pred cCCCeeEEEecccCCCCcceEEEEecCCCCc-EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE
Q 019117 158 VQTGICILIFAGAGGHRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 236 (346)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (346)
+++++.+..+.. .|...|.+++|+| ++. +|++++.||.|++||+++.. .++..+
T Consensus 276 ~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~~l~~g~~dg~i~vwd~~~~~----------------------~~~~~~ 330 (420)
T 3vl1_A 276 VFSKEQTIQLPS--KFTCSCNSLTVDG-NNANYIYAGYENGMLAQWDLRSPE----------------------CPVGEF 330 (420)
T ss_dssp TTTCCEEEEECC--TTSSCEEEEEECS-SCTTEEEEEETTSEEEEEETTCTT----------------------SCSEEE
T ss_pred CCCCceeEEccc--ccCCCceeEEEeC-CCCCEEEEEeCCCeEEEEEcCCCc----------------------Cchhhh
Confidence 999988777753 5889999999999 666 99999999999999998732 234455
Q ss_pred ee-cccceEEEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcc---eEEEEcC
Q 019117 237 SV-HSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN---AAAIGNR 311 (346)
Q Consensus 237 ~~-~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~---~l~~~~~ 311 (346)
.. |...|.++.+. +++|++++.|+.|++|++.................+..+...|.+++|+|++ . .+++++.
T Consensus 331 ~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~~g~l~a~g~ 408 (420)
T 3vl1_A 331 LINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDD--ESNGEVLEVGK 408 (420)
T ss_dssp EESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCS--SSSCEEEEEET
T ss_pred hccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCC--CCcceEEEEcC
Confidence 55 67788888887 7799999999999999998754322111112233455678899999999999 5 5777777
Q ss_pred CCcEEEEEcCC
Q 019117 312 EGKIFVWELQS 322 (346)
Q Consensus 312 dg~i~iwd~~~ 322 (346)
+|.+.+|++++
T Consensus 409 ~g~~~~~~~~~ 419 (420)
T 3vl1_A 409 NNFCALYNLSN 419 (420)
T ss_dssp TTEEEEEESCC
T ss_pred CceEEEEeccC
Confidence 89999999865
No 75
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.9e-36 Score=256.30 Aligned_cols=286 Identities=17% Similarity=0.252 Sum_probs=218.6
Q ss_pred eeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeee--------cCCCccceEEEEEEEc
Q 019117 24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYV--------DEDKEESFYTVSWACN 94 (346)
Q Consensus 24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~~~~ 94 (346)
+....+.+|.++|++++|+|. ++++||+++.|+ |++|++.++.....+.... ...|...|.+++|.
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 108 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPV---EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWY-- 108 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTT---TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEEC--
T ss_pred cceeeeeccCCcEEEEEEecC---CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEc--
Confidence 344566889999999999982 468999999888 9999998877655543211 12377889888887
Q ss_pred C-CCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCC--CceEEEeeCCCCEEEEecCCCeeEEEecccC
Q 019117 95 V-DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLK--PSLVVSASKDESVRLWNVQTGICILIFAGAG 171 (346)
Q Consensus 95 ~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 171 (346)
| ++. +|++++.||.|++||+.+++....+. +...+.++.++|.. +.++++++.|+.|++||+++++.+..+.
T Consensus 109 ~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--- 183 (408)
T 4a11_B 109 PHDTG-MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ--- 183 (408)
T ss_dssp TTCTT-CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC---
T ss_pred cCCCc-EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec---
Confidence 7 555 99999999999999999999888777 77889999999842 3389999999999999999999988888
Q ss_pred CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--
Q 019117 172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-- 249 (346)
Q Consensus 172 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 249 (346)
.|...|.+++|+|++..++++++.||.|++||++........-... ..............|...|.+++|+
T Consensus 184 ~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (408)
T 4a11_B 184 GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH-------NGKKSQAVESANTAHNGKVNGLCFTSD 256 (408)
T ss_dssp CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTT-------TTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccc-------ccccceeeccccccccCceeEEEEcCC
Confidence 7999999999999434479999999999999998743211100000 0000011122335688999999998
Q ss_pred CCEEEEEeecCeEEEEcCCCCCCCCCC--------------------------------------ccccccccccCCCcC
Q 019117 250 GDFILSKSVDNEIVLWEPKMKEQSPGE--------------------------------------GTADILQKYPVPECD 291 (346)
Q Consensus 250 ~~~l~~~~~d~~i~iwd~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~ 291 (346)
+++|++++.|+.|++||+.+++..... .....+..+.+|...
T Consensus 257 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 336 (408)
T 4a11_B 257 GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKT 336 (408)
T ss_dssp SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSC
T ss_pred CCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCe
Confidence 789999999999999999887542211 122345666789999
Q ss_pred eeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCccee
Q 019117 292 IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI 328 (346)
Q Consensus 292 v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 328 (346)
|.+++|+|++ .+|++++.||.|++||+.+++++..
T Consensus 337 v~~~~~s~~~--~~l~s~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 337 VDCCVFQSNF--QELYSGSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp EEEEEEETTT--TEEEEEETTSCEEEEEECC------
T ss_pred EEEEEEcCCC--CEEEEECCCCeEEEEeCCCCCccCC
Confidence 9999999999 7999999999999999999876553
No 76
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-37 Score=268.42 Aligned_cols=266 Identities=11% Similarity=0.066 Sum_probs=202.0
Q ss_pred eeecccCCCceEEEEEEeec--CCCccEEEEEcCCc-EEEEEeccCceee--e--E--eeeecCCCccceEEEEEEEcCC
Q 019117 26 TNKLQEGKRPLYAVVFNFID--SRYFNVFATVGGNR-VTVYQCLEGGVIA--A--L--QSYVDEDKEESFYTVSWACNVD 96 (346)
Q Consensus 26 ~~~~~~h~~~v~~~~~~p~~--~~~~~~la~~~~~~-v~i~~~~~~~~~~--~--~--~~~~~~~~~~~v~~~~~~~~~~ 96 (346)
...+.+|.+.|++|+|+|.. ..++.+||+++.|+ |++||+..+.... . + .......|...|.+++|. ++
T Consensus 200 ~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s--~~ 277 (524)
T 2j04_B 200 VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFL--SP 277 (524)
T ss_dssp EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEES--SS
T ss_pred EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEec--CC
Confidence 34567788999999999931 11367999999998 9999997664220 0 0 001112367888888886 54
Q ss_pred CCcEEEEeecCCeEEEEEccCcc-eeeeeccCCCceEEE--EEeCCCC-ceEEEeeCCCCEEEEecCCCeeEEEecccCC
Q 019117 97 GIPFLVAGGINGIIRVIDVSNEK-LHKSFVGHGDSINEI--RTQPLKP-SLVVSASKDESVRLWNVQTGICILIFAGAGG 172 (346)
Q Consensus 97 ~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~--~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 172 (346)
. .|++|+.||+|++||+.+++ +...+.+|...|.+| .|+| ++ .+|++|+.|++|+|||+++++++..+. +
T Consensus 278 -~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~~~~~~---~ 351 (524)
T 2j04_B 278 -T-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIATTKTTV---S 351 (524)
T ss_dssp -S-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHHHHCEEE---E
T ss_pred -C-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCcccccc---c
Confidence 3 79999999999999998764 455688999999999 5677 65 899999999999999999888776665 4
Q ss_pred CC--cceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-
Q 019117 173 HR--NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL- 249 (346)
Q Consensus 173 ~~--~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 249 (346)
|. ..|.+++|+| ++..+++++.|++|++||++. ...+..+.+|...|.+++|+
T Consensus 352 ~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~-----------------------~~~~~~l~gH~~~V~sva~Sp 407 (524)
T 2j04_B 352 RFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRA-----------------------AFAVHPLVSRETTITAIGVSR 407 (524)
T ss_dssp ECSCCSCCCEEEET-TTTEEEEECSSSEEEEEETTC-----------------------TTCCEEEEECSSCEEEEECCS
T ss_pred ccccCcccceEeCC-CcCeEEEeCCCCcEEEEECcc-----------------------cccceeeecCCCceEEEEeCC
Confidence 54 3588999999 888899999999999999988 23455677899999999999
Q ss_pred -CCEEEEEeecCeEEEEcCCCCCCCCC-----------------Cc------------------cccccccccCCCcCee
Q 019117 250 -GDFILSKSVDNEIVLWEPKMKEQSPG-----------------EG------------------TADILQKYPVPECDIW 293 (346)
Q Consensus 250 -~~~l~~~~~d~~i~iwd~~~~~~~~~-----------------~~------------------~~~~~~~~~~~~~~v~ 293 (346)
+.+|++|+.|++|++||+........ .. ....+..+.+|...|.
T Consensus 408 ~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~ 487 (524)
T 2j04_B 408 LHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINIT 487 (524)
T ss_dssp SCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCC
T ss_pred CCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEE
Confidence 78999999999999999754311100 00 0223455667889999
Q ss_pred EEEEeecCC-cceEEEEcCCCcEEEEEcCCC
Q 019117 294 FIKFSCDFH-YNAAAIGNREGKIFVWELQSS 323 (346)
Q Consensus 294 ~~~~s~~~~-~~~l~~~~~dg~i~iwd~~~~ 323 (346)
+++|+|+++ +.++|+|+.||.|+||++...
T Consensus 488 ~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 488 CTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred EEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 999999973 358999999999999998754
No 77
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.5e-36 Score=253.65 Aligned_cols=264 Identities=14% Similarity=0.125 Sum_probs=210.6
Q ss_pred ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (346)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (346)
.++....+.+|...|.+++|+| ++++|++++.|+ |++||+.+++....+.. ..+...+.+++|. |+++ +
T Consensus 41 ~~~~~~~~~~h~~~v~~~~~~~----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~~~v~~~~~~--~~~~-~ 110 (372)
T 1k8k_C 41 KWVQVHELKEHNGQVTGVDWAP----DSNRIVTCGTDRNAYVWTLKGRTWKPTLVI---LRINRAARCVRWA--PNEK-K 110 (372)
T ss_dssp EEEEEEEEECCSSCEEEEEEET----TTTEEEEEETTSCEEEEEEETTEEEEEEEC---CCCSSCEEEEEEC--TTSS-E
T ss_pred cEEeeeeecCCCCcccEEEEeC----CCCEEEEEcCCCeEEEEECCCCeeeeeEEe---ecCCCceeEEEEC--CCCC-E
Confidence 3457778889999999999999 789999999888 99999987765444332 2367788888877 8898 9
Q ss_pred EEEeecCCeEEEEEccCcce----eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEec------------------
Q 019117 101 LVAGGINGIIRVIDVSNEKL----HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV------------------ 158 (346)
Q Consensus 101 l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~------------------ 158 (346)
|++++.|+.|++||+..++. ......|...|.+++|+| ++.+|++++.|+.|++||+
T Consensus 111 l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~ 189 (372)
T 1k8k_C 111 FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 189 (372)
T ss_dssp EEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCC
T ss_pred EEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEccccccccccccccccccc
Confidence 99999999999999988763 233367899999999999 8899999999999999995
Q ss_pred CCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee
Q 019117 159 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 238 (346)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (346)
..++.+..+. +|...|.+++|+| ++.+|++++.|+.|++||+++ ...+..+..
T Consensus 190 ~~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~-----------------------~~~~~~~~~ 242 (372)
T 1k8k_C 190 PFGELMFESS---SSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADK-----------------------KMAVATLAS 242 (372)
T ss_dssp CTTCEEEECC---CCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGG-----------------------TTEEEEEEC
T ss_pred chhhheEecC---CCCCeEEEEEECC-CCCEEEEEeCCCEEEEEECCC-----------------------CceeEEEcc
Confidence 3677888887 7999999999999 889999999999999999998 345667788
Q ss_pred cccceEEEEec--CCEEEEEeecCeEEEEcCCC--CCC--CCC---------------------Ccccccc------ccc
Q 019117 239 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKM--KEQ--SPG---------------------EGTADIL------QKY 285 (346)
Q Consensus 239 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~--~~~--~~~---------------------~~~~~~~------~~~ 285 (346)
|...|.+++|+ +.+++++ .|+.|++|++.. ++. ... ....... ..+
T Consensus 243 ~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (372)
T 1k8k_C 243 ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL 321 (372)
T ss_dssp SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccc
Confidence 99999999998 5555555 999999999987 310 000 0000011 223
Q ss_pred -cCCCcCeeEEEEeecCC--cceEEEEcCCCcEEEEEcCCCC
Q 019117 286 -PVPECDIWFIKFSCDFH--YNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 286 -~~~~~~v~~~~~s~~~~--~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
.+|...|++++|++... ..+|++|+.||.|++||+.+++
T Consensus 322 ~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 322 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 47899999999775431 1389999999999999998765
No 78
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=9.8e-38 Score=267.42 Aligned_cols=274 Identities=14% Similarity=0.132 Sum_probs=188.7
Q ss_pred eeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117 24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (346)
Q Consensus 24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 102 (346)
.....+.+|.++|++|+|+|. ++.+|++++.|+ |++||+..+. ...+... ..+...+.+++ ++|+++ +|+
T Consensus 155 ~~~~~~~gH~~~V~~l~f~p~---~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~--~~~~~~~~~~~--~~~~~~-~l~ 225 (435)
T 4e54_B 155 PTFIKGIGAGGSITGLKFNPL---NTNQFYASSMEGTTRLQDFKGNI-LRVFASS--DTINIWFCSLD--VSASSR-MVV 225 (435)
T ss_dssp CEEECCCSSSCCCCEEEECSS---CTTEEEEECSSSCEEEEETTSCE-EEEEECC--SSCSCCCCCEE--EETTTT-EEE
T ss_pred eeEEEccCCCCCEEEEEEeCC---CCCEEEEEeCCCEEEEeeccCCc-eeEEecc--CCCCccEEEEE--ECCCCC-EEE
Confidence 344556899999999999983 468999999999 9999986543 3333221 11223344444 459998 999
Q ss_pred EeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEe
Q 019117 103 AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 182 (346)
Q Consensus 103 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 182 (346)
+|+.||.|++||++ ++.+..+.+|...|.+++|+|.+..+|++|+.|++|++||+++.+....+....+|...|++++|
T Consensus 226 ~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~ 304 (435)
T 4e54_B 226 TGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACF 304 (435)
T ss_dssp EECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCB
T ss_pred EEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeE
Confidence 99999999999986 45677888999999999999955668999999999999999987766555444479999999999
Q ss_pred cCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCE-EEEEeec
Q 019117 183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDF-ILSKSVD 259 (346)
Q Consensus 183 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~-l~~~~~d 259 (346)
+| ++.+|++++.||.|++||++.......... +...... ....+.........+..+.+. +.. ++++..+
T Consensus 305 sp-dg~~l~s~~~D~~i~iwd~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 377 (435)
T 4e54_B 305 SP-DGARLLTTDQKSEIRVYSASQWDCPLGLIP----HPHRHFQ--HLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYEL 377 (435)
T ss_dssp CT-TSSEEEEEESSSCEEEEESSSSSSEEEECC----CCCCCCS--SSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCC
T ss_pred CC-CCCeeEEEcCCCEEEEEECCCCccceEEec----ccccccc--cceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCC
Confidence 99 899999999999999999988443221110 0000000 000000000111122222222 222 2223345
Q ss_pred CeEEEEcCCCCCCCCCCccccccccc-cCCCcCeeEE-EEeecCCcceEEEEcCCCcEEEEEcCCCCcc
Q 019117 260 NEIVLWEPKMKEQSPGEGTADILQKY-PVPECDIWFI-KFSCDFHYNAAAIGNREGKIFVWELQSSPPV 326 (346)
Q Consensus 260 ~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~-~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 326 (346)
+.|++||..+++ .+..+ ..|...|.++ +|+|++ .+|++|+ |+.|+|||++++++.
T Consensus 378 ~~i~iwd~~~g~---------~~~~l~~~~~~~v~s~~~fspdg--~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 378 RTIDVFDGNSGK---------MMCQLYDPESSGISSLNEFNPMG--DTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp CCEEEECSSSCC---------EEEEECCSSCCCCCCEEEECTTS--SCEEEEC-SSEEEECCCC-----
T ss_pred CEEEEEECCCCc---------EEEEEeCCCCCcEEEEEEECCCC--CEEEEEc-CCcEEEEECCcCeee
Confidence 689999999876 44443 4577788887 699999 6888876 789999999998653
No 79
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-36 Score=260.69 Aligned_cols=274 Identities=15% Similarity=0.093 Sum_probs=210.7
Q ss_pred CceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCc---eeeeEeeeec-------------------------------
Q 019117 34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGG---VIAALQSYVD------------------------------- 79 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~---~~~~~~~~~~------------------------------- 79 (346)
.++.+++|+| +|++|+++..+.|++||+.+++ .+..+.....
T Consensus 5 ~p~~~v~~s~----dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T 2vdu_B 5 HPLQNLLTSR----DGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNK 80 (450)
T ss_dssp CCCCEEEECS----SSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC--------------------------------
T ss_pred ccEEEEEecC----CCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCc
Confidence 5789999999 7788888877779999999998 4444332110
Q ss_pred ------------------CCCccceEEEEEEEcCCCCcEE-EEeecCCeEEEEEcc--Ccceeeeec--cCCCceEEEEE
Q 019117 80 ------------------EDKEESFYTVSWACNVDGIPFL-VAGGINGIIRVIDVS--NEKLHKSFV--GHGDSINEIRT 136 (346)
Q Consensus 80 ------------------~~~~~~v~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~--~~~~~v~~~~~ 136 (346)
+.+...|.+++|+ |+++ +| ++++.||.|++||+. +++.+..+. .|...|.+++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~d~~-~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (450)
T 2vdu_B 81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLT--SDES-RLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISI 157 (450)
T ss_dssp -------------------CCCCCEEEEEEC--TTSS-EEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEE
T ss_pred CccccccCccccCCCCCCCccCCceEEEEEc--CCCC-EEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEE
Confidence 0122357777766 9998 75 899999999999999 888887776 56789999999
Q ss_pred eCCCCceEEEeeCCCCEEEEecCCCeeEE----EecccCCCCcceEEEEecCCC---CcEEEEEecCCeEEEEEccccce
Q 019117 137 QPLKPSLVVSASKDESVRLWNVQTGICIL----IFAGAGGHRNEVLSVDFHPSD---IYRIASCGMDNTVKIWSMKEFWT 209 (346)
Q Consensus 137 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~---~~~l~s~~~d~~i~iwd~~~~~~ 209 (346)
+| ++.+|++++.||.|++|++.+++... .+. +|...|++++|+| + +.+|++++.|+.|++||++..
T Consensus 158 sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~-- 230 (450)
T 2vdu_B 158 AE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPIL---GHVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQC-- 230 (450)
T ss_dssp CT-TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSE---ECSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESCT--
T ss_pred cC-CCCEEEEEeCCCcEEEEecCCcccccccceeee---cccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCC--
Confidence 99 88999999999999999998877554 444 6999999999999 7 889999999999999999872
Q ss_pred eeeeceeecCCCCCCCCccceeceEE-EeecccceEEEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccc--
Q 019117 210 YVEKSFTWTDLPSKFPTKYVQFPVFI-ASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY-- 285 (346)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-- 285 (346)
..+.. +..|...|.+++|+ +++|++++.|++|++||+.+++..........+..+
T Consensus 231 ---------------------~~~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~ 289 (450)
T 2vdu_B 231 ---------------------FIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLN 289 (450)
T ss_dssp ---------------------TCEEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCC
T ss_pred ---------------------ceeeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhh
Confidence 23333 45799999999997 889999999999999999987631111000000000
Q ss_pred --------------cCCCcCeeEEEEeecCCcceEEEEc-CCCcEEEEEc--CCC---CcceeeeeeeeEEEEEecCCC
Q 019117 286 --------------PVPECDIWFIKFSCDFHYNAAAIGN-REGKIFVWEL--QSS---PPVLIARLICFSLHVKYNPQS 344 (346)
Q Consensus 286 --------------~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~~~~spdg 344 (346)
......|..++|+|++ .+|++++ .|+.|++|++ .++ +.+......+.+.+++|+|++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~ 366 (450)
T 2vdu_B 290 DQHLAPPRFQNENNDIIEFAVSKIIKSKNL--PFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDE 366 (450)
T ss_dssp TTSBC----------CBCCCEEEEEECSSS--SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTE
T ss_pred hcccccccccccccccceEEEEEEEEeCCC--CEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCc
Confidence 0223578999999999 6788777 8999999999 554 333344444678999999964
No 80
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.5e-35 Score=254.90 Aligned_cols=259 Identities=17% Similarity=0.343 Sum_probs=222.4
Q ss_pred eeeeeecccCCCce-EEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117 23 YRVTNKLQEGKRPL-YAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (346)
Q Consensus 23 ~~~~~~~~~h~~~v-~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (346)
++....+.+|.+.| .++ ++ ++++|++|+.|+ |++||+.+++.+..+.. |...|.++++. +. +
T Consensus 108 ~~~~~~l~~h~~~v~~~~--~~----~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~-----h~~~v~~~~~~----~~-~ 171 (445)
T 2ovr_B 108 LKSPKVLKGHDDHVITCL--QF----CGNRIVSGSDDNTLKVWSAVTGKCLRTLVG-----HTGGVWSSQMR----DN-I 171 (445)
T ss_dssp CCCCEEEECSTTSCEEEE--EE----ETTEEEEEETTSCEEEEETTTCCEEEECCC-----CSSCEEEEEEE----TT-E
T ss_pred cceeEEecccCCCcEEEE--EE----cCCEEEEEECCCcEEEEECCCCcEEEEEcC-----CCCCEEEEEec----CC-E
Confidence 44556789999876 554 44 468999999998 99999998887776653 77888888875 44 8
Q ss_pred EEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180 (346)
Q Consensus 101 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 180 (346)
+++|+.||.|++||+.+++.+..+.+|...|.++.|++ ..+++|+.||+|++||+++++.+..+. +|...|.++
T Consensus 172 l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~ 245 (445)
T 2ovr_B 172 IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLM---GHVAAVRCV 245 (445)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEE---CCSSCEEEE
T ss_pred EEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEc---CCcccEEEE
Confidence 99999999999999999999999999999999999965 679999999999999999999999988 799999999
Q ss_pred EecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecC
Q 019117 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDN 260 (346)
Q Consensus 181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~ 260 (346)
+| ++.++++++.||.|++||+++ ...+..+..|...|.++.|++.++++++.|+
T Consensus 246 ~~---~~~~l~~~~~dg~i~iwd~~~-----------------------~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~ 299 (445)
T 2ovr_B 246 QY---DGRRVVSGAYDFMVKVWDPET-----------------------ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDT 299 (445)
T ss_dssp EE---CSSCEEEEETTSCEEEEEGGG-----------------------TEEEEEECCCSSCEEEEEECSSEEEEEETTS
T ss_pred EE---CCCEEEEEcCCCEEEEEECCC-----------------------CcEeEEecCCCCceEEEEECCCEEEEEeCCC
Confidence 98 456799999999999999988 4456677889999999999999999999999
Q ss_pred eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee----eeeeEE
Q 019117 261 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR----LICFSL 336 (346)
Q Consensus 261 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~ 336 (346)
.|++||+++++ .+..+..|...+.++.++ + .+|++++.||.|++||+.+++.+..+. +...+.
T Consensus 300 ~i~i~d~~~~~---------~~~~~~~~~~~v~~~~~~--~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 366 (445)
T 2ovr_B 300 SIRVWDVETGN---------CIHTLTGHQSLTSGMELK--D--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT 366 (445)
T ss_dssp CEEEEETTTCC---------EEEEECCCCSCEEEEEEE--T--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEE
T ss_pred eEEEEECCCCC---------EEEEEcCCcccEEEEEEe--C--CEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEE
Confidence 99999999876 677788888888877764 5 589999999999999999988766554 445588
Q ss_pred EEEecC
Q 019117 337 HVKYNP 342 (346)
Q Consensus 337 ~~~~sp 342 (346)
+++|++
T Consensus 367 ~~~~~~ 372 (445)
T 2ovr_B 367 CLQFNK 372 (445)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 888875
No 81
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.2e-35 Score=251.71 Aligned_cols=249 Identities=17% Similarity=0.252 Sum_probs=206.0
Q ss_pred eecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (346)
Q Consensus 27 ~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 105 (346)
..+.+|...|++|+|+| +|++||+|+.|+ |++||+.+++.+..+.. |...+.++++ ++. +|++|+
T Consensus 141 ~~~~~~~~~V~sv~fsp----dg~~lasgs~Dg~v~iWd~~~~~~~~~~~~-----h~~~v~~~s~----~~~-~l~sgs 206 (420)
T 4gga_A 141 LQMEQPGEYISSVAWIK----EGNYLAVGTSSAEVQLWDVQQQKRLRNMTS-----HSARVGSLSW----NSY-ILSSGS 206 (420)
T ss_dssp EECCSTTCCEEEEEECT----TSSEEEEEETTSCEEEEETTTTEEEEEECC-----CSSCEEEEEE----ETT-EEEEEE
T ss_pred EEecCCCCcEEEEEECC----CCCEEEEEECCCeEEEEEcCCCcEEEEEeC-----CCCceEEEee----CCC-EEEEEe
Confidence 34567889999999999 789999999999 99999999888777654 6667766655 355 999999
Q ss_pred cCCeEEEEEccCc-ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee----EEEecccCCCCcceEEE
Q 019117 106 INGIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC----ILIFAGAGGHRNEVLSV 180 (346)
Q Consensus 106 ~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~ 180 (346)
.|+.+++||.... ..+..+.+|...+..+.|+| ++.++++++.|+.+++|+..+++. +.... .|...|.++
T Consensus 207 ~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~---~~~~~V~~~ 282 (420)
T 4gga_A 207 RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT---QHQGAVKAV 282 (420)
T ss_dssp TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSCCSEEEC---CCSSCEEEE
T ss_pred CCCceeEeeecccceeeEEecccccceeeeeecC-CCCeeeeeeccccceEEeeccccccceeeeeec---ccCCceeee
Confidence 9999999998765 45677889999999999999 899999999999999999987653 33444 689999999
Q ss_pred EecCCCCcEEEEE--ecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEE
Q 019117 181 DFHPSDIYRIASC--GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK 256 (346)
Q Consensus 181 ~~~~~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~ 256 (346)
+|+|.+..+++++ +.|++|++||+.+. .....+.. ...+.++.|+ ++.++++
T Consensus 283 ~~~p~~~~~la~~~gs~D~~I~iwd~~t~-----------------------~~~~~~~~-~~~v~~~~~~~~~~~lv~~ 338 (420)
T 4gga_A 283 AWCPWQSNVLATGGGTSDRHIRIWNVCSG-----------------------ACLSAVDA-HSQVCSILWSPHYKELISG 338 (420)
T ss_dssp EECTTCTTEEEEEECTTTCEEEEEETTTT-----------------------EEEEEEEC-SSCEEEEEEETTTTEEEEE
T ss_pred eeCCCcccEEEEEeecCCCEEEEEeCCcc-----------------------ccceeecc-ccceeeeeecCCCCeEEEE
Confidence 9999777777764 47999999999983 33444444 4567788887 6677665
Q ss_pred e--ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCccee
Q 019117 257 S--VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI 328 (346)
Q Consensus 257 ~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 328 (346)
+ .|+.|+|||+.+++ ++..+.+|.+.|++++|+||+ .+|++|+.|++|+|||+.+..+...
T Consensus 339 sg~~d~~I~iwd~~~~~---------~v~~l~gH~~~V~~l~~spdg--~~l~S~s~D~tvriWdv~~~~~~~~ 401 (420)
T 4gga_A 339 HGFAQNQLVIWKYPTMA---------KVAELKGHTSRVLSLTMSPDG--ATVASAAADETLRLWRCFELDPARR 401 (420)
T ss_dssp ECTTTCCEEEEETTTCC---------EEEEECCCSSCEEEEEECTTS--SCEEEEETTTEEEEECCSCSSCC--
T ss_pred EecCCCEEEEEECCCCc---------EEEEEcCCCCCEEEEEEcCCC--CEEEEEecCCeEEEEECCCCCccch
Confidence 4 69999999999877 788899999999999999999 7899999999999999988665443
No 82
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=4e-36 Score=257.58 Aligned_cols=253 Identities=22% Similarity=0.338 Sum_probs=213.2
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 108 (346)
.+|...|++++| ++++|++|+.|+ |++||..+++....+.. |...|.++++ +++ +|++|+.||
T Consensus 130 ~~~~~~v~~~~~------d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-----h~~~v~~l~~----~~~-~l~sg~~dg 193 (435)
T 1p22_A 130 SETSKGVYCLQY------DDQKIVSGLRDNTIKIWDKNTLECKRILTG-----HTGSVLCLQY----DER-VIITGSSDS 193 (435)
T ss_dssp CSSCCCEEEEEC------CSSEEEEEESSSCEEEEESSSCCEEEEECC-----CSSCEEEEEC----CSS-EEEEEETTS
T ss_pred cCCCCcEEEEEE------CCCEEEEEeCCCeEEEEeCCCCeEEEEEcC-----CCCcEEEEEE----CCC-EEEEEcCCC
Confidence 567788999887 468999999988 99999998887777654 6778877766 566 999999999
Q ss_pred eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCc
Q 019117 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY 188 (346)
Q Consensus 109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 188 (346)
.|++||+.+++.+..+.+|...|.+++|++ ..+++|+.||.|++||+++++.........+|...|.+++| ++.
T Consensus 194 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~ 267 (435)
T 1p22_A 194 TVRVWDVNTGEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDK 267 (435)
T ss_dssp CEEEEESSSCCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETT
T ss_pred eEEEEECCCCcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCC
Confidence 999999999999999999999999999975 59999999999999999988766322222279999999999 456
Q ss_pred EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCC
Q 019117 189 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 268 (346)
Q Consensus 189 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~ 268 (346)
++++++.||.|++||+++ ...+..+..|...|.++.++++++++++.||.|++||++
T Consensus 268 ~l~s~~~dg~i~vwd~~~-----------------------~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~ 324 (435)
T 1p22_A 268 YIVSASGDRTIKVWNTST-----------------------CEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE 324 (435)
T ss_dssp EEEEEETTSEEEEEETTT-----------------------CCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred EEEEEeCCCeEEEEECCc-----------------------CcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 899999999999999988 445677888999999999999999999999999999999
Q ss_pred CCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC---------ccee-eeeeeeEEEE
Q 019117 269 MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP---------PVLI-ARLICFSLHV 338 (346)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~-~~~~~~~~~~ 338 (346)
+++ .+..+.+|...|.+++| ++ .+|++|+.||.|++||+.++. .+.. ..+.+.+.++
T Consensus 325 ~~~---------~~~~~~~h~~~v~~~~~--~~--~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 391 (435)
T 1p22_A 325 CGA---------CLRVLEGHEELVRCIRF--DN--KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL 391 (435)
T ss_dssp TCC---------EEEEECCCSSCEEEEEC--CS--SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE
T ss_pred CCC---------EEEEEeCCcCcEEEEEe--cC--CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEE
Confidence 876 67888889999999999 55 689999999999999997765 2221 2233457777
Q ss_pred Ee
Q 019117 339 KY 340 (346)
Q Consensus 339 ~~ 340 (346)
+|
T Consensus 392 ~~ 393 (435)
T 1p22_A 392 QF 393 (435)
T ss_dssp EE
T ss_pred Ee
Confidence 77
No 83
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.8e-35 Score=252.33 Aligned_cols=262 Identities=20% Similarity=0.330 Sum_probs=215.4
Q ss_pred eEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEc
Q 019117 36 LYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDV 115 (346)
Q Consensus 36 v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 115 (346)
++.|+||+ +++||+|.++.|+|||..+++....+.. ..|...|++++|+ |+|+ +|++|+.||.|++||+
T Consensus 108 ~~~l~wS~-----~n~lAvgld~tV~lWd~~tg~~~~~~~~---~~~~~~V~sv~fs--pdg~-~lasgs~Dg~v~iWd~ 176 (420)
T 4gga_A 108 LNLVDWSS-----GNVLAVALDNSVYLWSASSGDILQLLQM---EQPGEYISSVAWI--KEGN-YLAVGTSSAEVQLWDV 176 (420)
T ss_dssp CBCEEECT-----TSEEEEEETTEEEEEETTTCCEEEEEEC---CSTTCCEEEEEEC--TTSS-EEEEEETTSCEEEEET
T ss_pred ceeEEECC-----CCEEEEEeCCEEEEEECCCCCEEEEEEe---cCCCCcEEEEEEC--CCCC-EEEEEECCCeEEEEEc
Confidence 56799986 4689998866699999999987776653 2467789888887 9999 9999999999999999
Q ss_pred cCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC-eeEEEecccCCCCcceEEEEecCCCCcEEEEEe
Q 019117 116 SNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 194 (346)
Q Consensus 116 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 194 (346)
.+++.+..+.+|...+.++.+++ ..|++|+.|+.+++||.... ..+..+. +|...+..+.++| ++.++++++
T Consensus 177 ~~~~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~---~h~~~~~~~~~~~-~g~~l~s~~ 249 (420)
T 4gga_A 177 QQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLS---GHSQEVCGLRWAP-DGRHLASGG 249 (420)
T ss_dssp TTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEE---CCSSCEEEEEECT-TSSEEEEEE
T ss_pred CCCcEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEec---ccccceeeeeecC-CCCeeeeee
Confidence 99999999999999999998864 79999999999999998864 4455666 7999999999999 899999999
Q ss_pred cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEE--eecCeEEEEcCCC
Q 019117 195 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSK--SVDNEIVLWEPKM 269 (346)
Q Consensus 195 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~--~~d~~i~iwd~~~ 269 (346)
.|+.|++|+....+. ....+.....|...|.+++|+ +.+++++ +.|++|++||+.+
T Consensus 250 ~D~~v~i~~~~~~~~-------------------~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t 310 (420)
T 4gga_A 250 NDNLVNVWPSAPGEG-------------------GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS 310 (420)
T ss_dssp TTSCEEEEESSCCSS-------------------CSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT
T ss_pred ccccceEEeeccccc-------------------cceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc
Confidence 999999999987321 122455677899999999998 5566654 4799999999998
Q ss_pred CCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEE--EcCCCcEEEEEcCCCCcceeee-eeeeEEEEEecCCCCC
Q 019117 270 KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI--GNREGKIFVWELQSSPPVLIAR-LICFSLHVKYNPQSVY 346 (346)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~spdg~~ 346 (346)
++ .+..+..+ ..+.++.|++++. .+++ |+.|+.|+|||+.+++++..+. +.+.|++++|+|||++
T Consensus 311 ~~---------~~~~~~~~-~~v~~~~~~~~~~--~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~ 378 (420)
T 4gga_A 311 GA---------CLSAVDAH-SQVCSILWSPHYK--ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT 378 (420)
T ss_dssp TE---------EEEEEECS-SCEEEEEEETTTT--EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSC
T ss_pred cc---------cceeeccc-cceeeeeecCCCC--eEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence 76 45555544 4789999999994 4444 4479999999999998766543 4556999999999975
No 84
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.3e-36 Score=259.00 Aligned_cols=269 Identities=18% Similarity=0.305 Sum_probs=209.9
Q ss_pred ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (346)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (346)
..+....+.+|.+.|.+++|. +.+|++|+.|+ |++||+.+++.+..+.. |...|.+++|. +. +
T Consensus 162 ~~~~~~~~~~h~~~v~~l~~~------~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-----h~~~v~~l~~~----~~-~ 225 (435)
T 1p22_A 162 TLECKRILTGHTGSVLCLQYD------ERVIITGSSDSTVRVWDVNTGEMLNTLIH-----HCEAVLHLRFN----NG-M 225 (435)
T ss_dssp SCCEEEEECCCSSCEEEEECC------SSEEEEEETTSCEEEEESSSCCEEEEECC-----CCSCEEEEECC----TT-E
T ss_pred CCeEEEEEcCCCCcEEEEEEC------CCEEEEEcCCCeEEEEECCCCcEEEEEcC-----CCCcEEEEEEc----CC-E
Confidence 345667788999999999983 47999999998 99999999887776653 67788877774 34 8
Q ss_pred EEEeecCCeEEEEEccCccee---eeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcce
Q 019117 101 LVAGGINGIIRVIDVSNEKLH---KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV 177 (346)
Q Consensus 101 l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 177 (346)
+++|+.||.|++||+.+++.. ..+.+|...|.+++|. ++++++|+.||.|++||+++++.+..+. +|...|
T Consensus 226 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~v 299 (435)
T 1p22_A 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFVRTLN---GHKRGI 299 (435)
T ss_dssp EEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTTCCEEEEEE---CCSSCE
T ss_pred EEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCcCcEEEEEc---CCCCcE
Confidence 999999999999999988755 6778899999999993 5799999999999999999999999998 799999
Q ss_pred EEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEe
Q 019117 178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKS 257 (346)
Q Consensus 178 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~ 257 (346)
.+++++ +.++++|+.||.|++||+++ ...+..+..|...|.++.|++++|++++
T Consensus 300 ~~~~~~---~~~l~~g~~dg~i~iwd~~~-----------------------~~~~~~~~~h~~~v~~~~~~~~~l~sg~ 353 (435)
T 1p22_A 300 ACLQYR---DRLVVSGSSDNTIRLWDIEC-----------------------GACLRVLEGHEELVRCIRFDNKRIVSGA 353 (435)
T ss_dssp EEEEEE---TTEEEEEETTSCEEEEETTT-----------------------CCEEEEECCCSSCEEEEECCSSEEEEEE
T ss_pred EEEEeC---CCEEEEEeCCCeEEEEECCC-----------------------CCEEEEEeCCcCcEEEEEecCCEEEEEe
Confidence 999985 46899999999999999998 3456778889999999999999999999
Q ss_pred ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEE
Q 019117 258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLH 337 (346)
Q Consensus 258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 337 (346)
.||.|++||+.+.+..........+..+..|.+.|.+++| ++ .+|++++.||.|++||+.+...........+...
T Consensus 354 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~--~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 429 (435)
T 1p22_A 354 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DE--FQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRT 429 (435)
T ss_dssp TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CS--SCEEECCSSSEEEEEC------------------
T ss_pred CCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CC--CEEEEEeCCCEEEEEECCCCCCcccCCCCCCccc
Confidence 9999999999776532222222256777889999999999 55 6899999999999999998876555555555566
Q ss_pred EEecC
Q 019117 338 VKYNP 342 (346)
Q Consensus 338 ~~~sp 342 (346)
+.|.+
T Consensus 430 ~~~~~ 434 (435)
T 1p22_A 430 YTYIS 434 (435)
T ss_dssp -----
T ss_pred eeeec
Confidence 66654
No 85
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=3.3e-36 Score=257.51 Aligned_cols=260 Identities=16% Similarity=0.261 Sum_probs=211.4
Q ss_pred ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEecc----------CceeeeEeeeecCCCccceEEEEEEEcCC
Q 019117 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE----------GGVIAALQSYVDEDKEESFYTVSWACNVD 96 (346)
Q Consensus 28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 96 (346)
...+|.+.|++++|+|. ++.+||+++.++ |++|++.+ ......+. .|...+.+++|. |+
T Consensus 123 ~~~~h~~~v~~l~~~p~---~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~~--~~ 192 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQ---NACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR-----GHQKEGYGLSWN--PN 192 (430)
T ss_dssp EEEEESSCCSEEEEETT---EEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE-----CCSSCCCCEEEC--TT
T ss_pred EEEcCCCcEEEEEECCC---CCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec-----CCCCCeEEEEeC--CC
Confidence 34689999999999992 267999999888 99999986 34444444 367788888887 77
Q ss_pred CCcEEEEeecCCeEEEEEccCcce-------eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC---eeEEE
Q 019117 97 GIPFLVAGGINGIIRVIDVSNEKL-------HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG---ICILI 166 (346)
Q Consensus 97 ~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~ 166 (346)
+..+|++|+.||.|++||+.++.. ...+.+|...|.+++|+|.++.+|++++.|+.|++||++++ +.+..
T Consensus 193 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~ 272 (430)
T 2xyi_A 193 LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT 272 (430)
T ss_dssp STTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEE
T ss_pred CCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeE
Confidence 766899999999999999987322 45667899999999999977889999999999999999987 46666
Q ss_pred ecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEE
Q 019117 167 FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN 246 (346)
Q Consensus 167 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 246 (346)
+. .|...|++++|+|++..++++|+.||.|++||++.. ..++..+..|...|.++
T Consensus 273 ~~---~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~----------------------~~~~~~~~~h~~~v~~i 327 (430)
T 2xyi_A 273 VD---AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL----------------------KLKLHSFESHKDEIFQV 327 (430)
T ss_dssp EE---CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT----------------------TSCSEEEECCSSCEEEE
T ss_pred ee---cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC----------------------CCCeEEeecCCCCEEEE
Confidence 66 699999999999944558999999999999999872 23566788899999999
Q ss_pred Eec--C-CEEEEEeecCeEEEEcCCCCCCCCC-----CccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117 247 RWL--G-DFILSKSVDNEIVLWEPKMKEQSPG-----EGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (346)
Q Consensus 247 ~~~--~-~~l~~~~~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw 318 (346)
.|+ + .+|++++.|+.|++||+........ ......+..+.+|...|.+++|+|+++ .+|++++.||.|++|
T Consensus 328 ~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~l~s~s~dg~i~iw 406 (430)
T 2xyi_A 328 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-WIICSVSEDNIMQVW 406 (430)
T ss_dssp EECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSST-TEEEEEETTSEEEEE
T ss_pred EECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCC-CEEEEEECCCCEEEe
Confidence 998 4 4799999999999999987331110 001235667778899999999999993 289999999999999
Q ss_pred EcCCC
Q 019117 319 ELQSS 323 (346)
Q Consensus 319 d~~~~ 323 (346)
++...
T Consensus 407 ~~~~~ 411 (430)
T 2xyi_A 407 QMAEN 411 (430)
T ss_dssp EECHH
T ss_pred Ecccc
Confidence 99764
No 86
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-35 Score=242.40 Aligned_cols=258 Identities=16% Similarity=0.242 Sum_probs=212.0
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (346)
.+....+..|...|.+++|+| ++.+|++++.++ |++|++........+..+ ..|...+.+++| ++. +|
T Consensus 49 ~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~----~~~-~l 117 (313)
T 3odt_A 49 QWLGTVVYTGQGFLNSVCYDS----EKELLLFGGKDTMINGVPLFATSGEDPLYTL--IGHQGNVCSLSF----QDG-VV 117 (313)
T ss_dssp SEEEEEEEECSSCEEEEEEET----TTTEEEEEETTSCEEEEETTCCTTSCC-CEE--CCCSSCEEEEEE----ETT-EE
T ss_pred CEEEEEeecCCccEEEEEECC----CCCEEEEecCCCeEEEEEeeecCCCCcccch--hhcccCEEEEEe----cCC-EE
Confidence 445566788999999999999 789999999998 999998765433333322 237788888877 355 89
Q ss_pred EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEE
Q 019117 102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 181 (346)
Q Consensus 102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 181 (346)
++++.||.|++|| .++....+..|...+.++.|.|.++..+++++.|+.|++|| ..+....+.. .|...+.+++
T Consensus 118 ~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~--~~~~~i~~~~ 191 (313)
T 3odt_A 118 ISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSG--IHNDVVRHLA 191 (313)
T ss_dssp EEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECS--SCSSCEEEEE
T ss_pred EEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEec--cCcccEEEEE
Confidence 9999999999999 67788888899999999999987788999999999999999 4566666662 3889999999
Q ss_pred ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecC
Q 019117 182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDN 260 (346)
Q Consensus 182 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~ 260 (346)
|+| ++. +++++.|+.|++||++. ...+..+..|...|.+++|+ ...+++++.|+
T Consensus 192 ~~~-~~~-~~~~~~dg~i~i~d~~~-----------------------~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg 246 (313)
T 3odt_A 192 VVD-DGH-FISCSNDGLIKLVDMHT-----------------------GDVLRTYEGHESFVYCIKLLPNGDIVSCGEDR 246 (313)
T ss_dssp EEE-TTE-EEEEETTSEEEEEETTT-----------------------CCEEEEEECCSSCEEEEEECTTSCEEEEETTS
T ss_pred EcC-CCe-EEEccCCCeEEEEECCc-----------------------hhhhhhhhcCCceEEEEEEecCCCEEEEecCC
Confidence 998 766 99999999999999988 34567788899999999999 33799999999
Q ss_pred eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeee
Q 019117 261 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICF 334 (346)
Q Consensus 261 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 334 (346)
.|++||+.+++ .+..+..|...|.+++|+|++ . +++++.||.|++||+.+++........+.
T Consensus 247 ~v~iwd~~~~~---------~~~~~~~~~~~i~~~~~~~~~--~-~~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 308 (313)
T 3odt_A 247 TVRIWSKENGS---------LKQVITLPAISIWSVDCMSNG--D-IIVGSSDNLVRIFSQEKSRWASEDEIKGE 308 (313)
T ss_dssp EEEEECTTTCC---------EEEEEECSSSCEEEEEECTTS--C-EEEEETTSCEEEEESCGGGCCC-------
T ss_pred EEEEEECCCCc---------eeEEEeccCceEEEEEEccCC--C-EEEEeCCCcEEEEeCCCCceeehhhhhhh
Confidence 99999999876 677788888899999999998 4 66789999999999999877665555443
No 87
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-35 Score=248.03 Aligned_cols=250 Identities=12% Similarity=0.147 Sum_probs=215.8
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (346)
.+....+.+|...|.+++|+| ++++|++++.|+ |++||+.+++.+..+. +...+.+++|. |+++ +|
T Consensus 64 ~~~~~~~~~h~~~v~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~v~~~~~~--~~~~-~l 130 (369)
T 3zwl_B 64 GERLGTLDGHTGTIWSIDVDC----FTKYCVTGSADYSIKLWDVSNGQCVATWK------SPVPVKRVEFS--PCGN-YF 130 (369)
T ss_dssp CCEEEEECCCSSCEEEEEECT----TSSEEEEEETTTEEEEEETTTCCEEEEEE------CSSCEEEEEEC--TTSS-EE
T ss_pred chhhhhhhhcCCcEEEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEee------cCCCeEEEEEc--cCCC-EE
Confidence 456677889999999999999 789999999988 9999999888777665 55678777776 8998 99
Q ss_pred EEeecC-----CeEEEEEccCcc-----------eeeeeccCCC--ceEEEEEeCCCCceEEEeeCCCCEEEEecCC-Ce
Q 019117 102 VAGGIN-----GIIRVIDVSNEK-----------LHKSFVGHGD--SINEIRTQPLKPSLVVSASKDESVRLWNVQT-GI 162 (346)
Q Consensus 102 ~~~~~d-----g~i~iwd~~~~~-----------~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~ 162 (346)
++++.+ +.|++||+.... ....+..|.. .+.+++|+| ++.+|++++.||.|++||+++ ++
T Consensus 131 ~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~ 209 (369)
T 3zwl_B 131 LAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYE 209 (369)
T ss_dssp EEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTE
T ss_pred EEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcE
Confidence 999988 999999997664 3344555665 899999999 889999999999999999998 78
Q ss_pred eEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccc
Q 019117 163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 242 (346)
Q Consensus 163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (346)
.+..+. .|...|.+++|+| ++.+|++++.|+.|++||+++. ..+..+. +...
T Consensus 210 ~~~~~~---~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~-----------------------~~~~~~~-~~~~ 261 (369)
T 3zwl_B 210 YVDSID---LHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVSTL-----------------------QVLKKYE-TDCP 261 (369)
T ss_dssp EEEEEE---CCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTC-----------------------CEEEEEE-CSSC
T ss_pred eEEEEe---cCCCceeEEEECC-CCCEEEEecCCceEEEEECCCC-----------------------ceeeeec-CCCC
Confidence 888887 7999999999999 8999999999999999999883 2333333 7788
Q ss_pred eEEEEec--CCEEEEEeecC--------------eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceE
Q 019117 243 VDCNRWL--GDFILSKSVDN--------------EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAA 306 (346)
Q Consensus 243 i~~~~~~--~~~l~~~~~d~--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l 306 (346)
+.++.|+ ++++++++.++ .+++||..+.+ .+..+.+|...|.+++|+|++ .+|
T Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---------~~~~~~~~~~~v~~~~~s~~~--~~l 330 (369)
T 3zwl_B 262 LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE---------EIGRVQGHFGPLNTVAISPQG--TSY 330 (369)
T ss_dssp EEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCC---------EEEEEECCSSCEEEEEECTTS--SEE
T ss_pred ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc---------chhheecccCcEEEEEECCCC--CEE
Confidence 9999998 88999999888 89999998876 677888899999999999999 799
Q ss_pred EEEcCCCcEEEEEcCCCCc
Q 019117 307 AIGNREGKIFVWELQSSPP 325 (346)
Q Consensus 307 ~~~~~dg~i~iwd~~~~~~ 325 (346)
++++.||.|++|++.++..
T Consensus 331 ~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 331 ASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp EEEETTSEEEEEEECHHHH
T ss_pred EEEcCCCeEEEEECccccc
Confidence 9999999999999987653
No 88
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.4e-36 Score=287.24 Aligned_cols=286 Identities=17% Similarity=0.271 Sum_probs=228.2
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (346)
.+....+.+|.+.|.+++|+| ++++||+++.|+ |++||+.+++.+..+.. |...|.+++|....++. ++
T Consensus 647 ~~~~~~~~~h~~~v~~~~~s~----~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~-~l 716 (1249)
T 3sfz_A 647 GEKLLDIKAHEDEVLCCAFSS----DDSYIATCSADKKVKIWDSATGKLVHTYDE-----HSEQVNCCHFTNKSNHL-LL 716 (1249)
T ss_dssp CCEEEEECCCSSCEEEEEECT----TSSEEEEEETTSEEEEEETTTCCEEEEEEC-----CSSCEEEEEECSSSSCC-EE
T ss_pred CCEEEEeccCCCCEEEEEEec----CCCEEEEEeCCCeEEEEECCCCceEEEEcC-----CCCcEEEEEEecCCCce-EE
Confidence 456677889999999999999 789999999988 99999999988777764 77889888887433556 89
Q ss_pred EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEeccc-----------
Q 019117 102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA----------- 170 (346)
Q Consensus 102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----------- 170 (346)
++|+.|+.|++||+.+++.+..+.+|.+.|.+++|+| ++.+|++++.||+|++||+.+++....+...
T Consensus 717 ~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1249)
T 3sfz_A 717 ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPE 795 (1249)
T ss_dssp EEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------
T ss_pred EEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccc
Confidence 9999999999999999999999999999999999999 8899999999999999999877665544210
Q ss_pred -----------------------------------------CCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccce
Q 019117 171 -----------------------------------------GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT 209 (346)
Q Consensus 171 -----------------------------------------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 209 (346)
.+|...|.+++|+| ++.++++++.|+.|++||+.+
T Consensus 796 ~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~--- 871 (1249)
T 3sfz_A 796 DVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDS--- 871 (1249)
T ss_dssp CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTT---
T ss_pred cccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCC---
Confidence 14667788888888 788888888888888888877
Q ss_pred eeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCC-------------
Q 019117 210 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSP------------- 274 (346)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~------------- 274 (346)
...+..+..|...|.++.|+ ++++++++.|+.|++|++.......
T Consensus 872 --------------------~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~ 931 (1249)
T 3sfz_A 872 --------------------RLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQ 931 (1249)
T ss_dssp --------------------TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEE
T ss_pred --------------------CceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEc
Confidence 33445566677777777776 5677777777777777643210000
Q ss_pred ---------------------------------------------------------CCccccccccccCCCcCeeEEEE
Q 019117 275 ---------------------------------------------------------GEGTADILQKYPVPECDIWFIKF 297 (346)
Q Consensus 275 ---------------------------------------------------------~~~~~~~~~~~~~~~~~v~~~~~ 297 (346)
..........+.+|...|.+++|
T Consensus 932 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~ 1011 (1249)
T 3sfz_A 932 ENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQF 1011 (1249)
T ss_dssp TTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEE
T ss_pred CCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEE
Confidence 00011244556678899999999
Q ss_pred eecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCC
Q 019117 298 SCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSV 345 (346)
Q Consensus 298 s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~ 345 (346)
+|++ .+|++++.||.|++||+.+++......+...+.++.|+|+++
T Consensus 1012 s~dg--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 1057 (1249)
T 3sfz_A 1012 TADG--KTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSR 1057 (1249)
T ss_dssp CSSS--SCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSE
T ss_pred CCCC--CEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCc
Confidence 9999 789999999999999999998776666777789999999875
No 89
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=8.1e-36 Score=251.59 Aligned_cols=259 Identities=15% Similarity=0.176 Sum_probs=196.5
Q ss_pred ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec
Q 019117 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI 106 (346)
Q Consensus 28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 106 (346)
.+.+|...|.+++|+|. ++.+|++++.|+ |++||+.. .....+..+ ..+...+.+++|+ |+++ +|++++.
T Consensus 113 ~~~~h~~~v~~~~~~~~---~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~--~~~~~~v~~~~~~--~~~~-~l~~~~~ 183 (383)
T 3ei3_B 113 QGMGPGDAITGMKFNQF---NTNQLFVSSIRGATTLRDFSG-SVIQVFAKT--DSWDYWYCCVDVS--VSRQ-MLATGDS 183 (383)
T ss_dssp CCCSTTCBEEEEEEETT---EEEEEEEEETTTEEEEEETTS-CEEEEEECC--CCSSCCEEEEEEE--TTTT-EEEEEET
T ss_pred ecCCcCCceeEEEeCCC---CCCEEEEEeCCCEEEEEECCC-CceEEEecc--CCCCCCeEEEEEC--CCCC-EEEEECC
Confidence 34579999999999982 358999999988 99999874 444444432 2245778888887 8898 9999999
Q ss_pred CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCc-eEEEeeCCCCEEEEecCC----CeeEEEecccCCCCcceEEEE
Q 019117 107 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS-LVVSASKDESVRLWNVQT----GICILIFAGAGGHRNEVLSVD 181 (346)
Q Consensus 107 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~~~~~v~~~~ 181 (346)
|+.|++||+ +++.+..+.+|...|.+++|+| ++. +|++++.|+.|++||+++ +..+..+. |...|.+++
T Consensus 184 d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~ 257 (383)
T 3ei3_B 184 TGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP----HEKPVNAAY 257 (383)
T ss_dssp TSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE----CSSCEEEEE
T ss_pred CCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec----CCCceEEEE
Confidence 999999998 5778888999999999999999 666 999999999999999997 56666664 899999999
Q ss_pred ecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeec-ccceEEEEec--CCEEEEEee
Q 019117 182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH-SNYVDCNRWL--GDFILSKSV 258 (346)
Q Consensus 182 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~--~~~l~~~~~ 258 (346)
|+|.++.+|++++.|+.|++||+++............ .... ...++. ...+ ...+..+.|+ +++ +++.
T Consensus 258 ~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~--~~~~~~-~~~~p~~~~~~~~~s~dg~~--s~s~ 328 (383)
T 3ei3_B 258 FNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPH----RQFQ--HLTPIK-ATWHPMYDLIVAGRYPDDQL--LLND 328 (383)
T ss_dssp ECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCB----CCCT--TSCCCC-CEECSSSSEEEEECBCCTTT--CTTC
T ss_pred EcCCCCCEEEEEcCCCcEEEEECCCCccccccccccc----cccc--cccceE-EeccCCCCceEEEecCCccc--ccCC
Confidence 9985778899999999999999988443211110000 0000 000011 0111 2345556665 444 8889
Q ss_pred cCeEEEEcCCCCCCCCCCccccccccccC--CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117 259 DNEIVLWEPKMKEQSPGEGTADILQKYPV--PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (346)
Q Consensus 259 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~ 322 (346)
|+.|++||+.+++ .+..+.+ +...+..++|+|++ .+|++++ ||.|++||+++
T Consensus 329 d~~i~iwd~~~~~---------~~~~l~~~~~~~~~~~~~~s~~g--~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 329 KRTIDIYDANSGG---------LVHQLRDPNAAGIISLNKFSPTG--DVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CCCEEEEETTTCC---------EEEEECBTTBCSCCCEEEECTTS--SEEEEEE-TTEEEEEECC-
T ss_pred CCeEEEEecCCCc---------eeeeecCCCCCceEEEEEEecCc--cEEEEec-CCcEEEEecCC
Confidence 9999999999876 5666665 45678888999999 7899997 99999999875
No 90
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-36 Score=256.71 Aligned_cols=281 Identities=10% Similarity=0.064 Sum_probs=206.0
Q ss_pred cCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEec---cCceeeeEeee-----ecCC--CccceEEEEEEEcCCCCc
Q 019117 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCL---EGGVIAALQSY-----VDED--KEESFYTVSWACNVDGIP 99 (346)
Q Consensus 31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~---~~~~~~~~~~~-----~~~~--~~~~v~~~~~~~~~~~~~ 99 (346)
+|..+|++++|+| ++.+|++++.|+ |++||+. .++.......+ .... +...+.++.+.+++++.
T Consensus 109 ~h~~~v~~~~~~~----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~- 183 (437)
T 3gre_A 109 DCSSTVTQITMIP----NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS- 183 (437)
T ss_dssp ECSSCEEEEEECT----TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE-
T ss_pred cCCCCEEEEEEeC----CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC-
Confidence 5999999999998 789999999998 9999995 55544433321 1111 55677778877888998
Q ss_pred EEEEeecCCeEEEEEccCcceeeeecc--CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcce
Q 019117 100 FLVAGGINGIIRVIDVSNEKLHKSFVG--HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV 177 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 177 (346)
+|++++.|+.|++||+.+++.+..+.. |...|.+++|+| ++.+|++|+.||.|++||+++++++..+.. .|...|
T Consensus 184 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v 260 (437)
T 3gre_A 184 LLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSF--GDHAPI 260 (437)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBC--TTCEEE
T ss_pred EEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEec--CCCCce
Confidence 999999999999999999999999988 899999999999 899999999999999999999999888753 477899
Q ss_pred EEEEecCC---CCcEEEEEecCCeEEEEEccccceeeeeceeecCCC-CCCCCccceeceEEEee--cccceEEEEec-C
Q 019117 178 LSVDFHPS---DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLP-SKFPTKYVQFPVFIASV--HSNYVDCNRWL-G 250 (346)
Q Consensus 178 ~~~~~~~~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~i~~~~~~-~ 250 (346)
.+++|+|. ++.+|++++.||.|++||+++.+............. ..+...........+.+ |...|.+++|+ +
T Consensus 261 ~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~ 340 (437)
T 3gre_A 261 THVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSND 340 (437)
T ss_dssp EEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETT
T ss_pred EEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCc
Confidence 99966651 677999999999999999987543221110000000 00000000000011233 88889999999 6
Q ss_pred CEEEEEeecCeEEEEcCCCCCCCCCCcc----------------------------ccccccccCCCcCeeEEEEeecCC
Q 019117 251 DFILSKSVDNEIVLWEPKMKEQSPGEGT----------------------------ADILQKYPVPECDIWFIKFSCDFH 302 (346)
Q Consensus 251 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~v~~~~~s~~~~ 302 (346)
++|++++.|+.|++||+.+++....... .........|...|.+++|+++..
T Consensus 341 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~ 420 (437)
T 3gre_A 341 KILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDE 420 (437)
T ss_dssp EEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSS
T ss_pred eEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCC
Confidence 7999999999999999998763211100 001112233889999999999933
Q ss_pred cceEEEEcCCCcEEEEE
Q 019117 303 YNAAAIGNREGKIFVWE 319 (346)
Q Consensus 303 ~~~l~~~~~dg~i~iwd 319 (346)
..+|++|+.||.|+||+
T Consensus 421 ~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 421 TPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp SEEEEEEETTSCEEEEC
T ss_pred ceEEEEEcCCceEEEeC
Confidence 37999999999999995
No 91
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-36 Score=275.41 Aligned_cols=259 Identities=20% Similarity=0.303 Sum_probs=208.9
Q ss_pred eeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccC--ceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117 26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG--GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (346)
Q Consensus 26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 102 (346)
...+.+|.++|++++|+| ++++|++|+.|+ |++|++..+ .....+. .|...|.+++|+.+.++. +|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~----dg~~latg~~dg~I~vwd~~~~~~~~~~~l~-----~h~~~V~~l~~s~~~~~~-~l~ 71 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDY----YGKRLATCSSDKTIKIFEVEGETHKLIDTLT-----GHEGPVWRVDWAHPKFGT-ILA 71 (753)
T ss_dssp ------CCCCEEEECCCS----SSCCEEEEETTTEEEEEEEETTEEEEEEEEC-----CCSSCEEEEEECCTTSCS-EEE
T ss_pred eeecccCcceeEEEEECC----CCCeEEEEECCCcEEEEecCCCCCccceecc-----CCcCceEEEEecCCCCCC-EEE
Confidence 346789999999999999 788999999888 999998743 3333333 378899999887433377 999
Q ss_pred EeecCCeEEEEEccCcc--eeeeeccCCCceEEEEEeCCC--CceEEEeeCCCCEEEEecCCCe--eEEEecccCCCCcc
Q 019117 103 AGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLK--PSLVVSASKDESVRLWNVQTGI--CILIFAGAGGHRNE 176 (346)
Q Consensus 103 ~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~ 176 (346)
+|+.||.|++||+.+++ .+..+.+|...|.+++|+| + +..+++|+.||.|++||++++. ....+. +|...
T Consensus 72 s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~---~~~~~ 147 (753)
T 3jro_A 72 SCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIID---AHAIG 147 (753)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE---CCSSC
T ss_pred EEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEee---cCCCc
Confidence 99999999999999887 6778888999999999999 6 8999999999999999998773 333444 69999
Q ss_pred eEEEEecCC------------CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE
Q 019117 177 VLSVDFHPS------------DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD 244 (346)
Q Consensus 177 v~~~~~~~~------------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (346)
|.+++|+|. ++.++++|+.||.|++||++.... .......+..|...|.
T Consensus 148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~-------------------~~~~~~~~~~h~~~V~ 208 (753)
T 3jro_A 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-------------------TYVLESTLEGHSDWVR 208 (753)
T ss_dssp EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT-------------------EEEEEEEECCCSSCEE
T ss_pred eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc-------------------cceeeeeecCCCCcEE
Confidence 999999984 478999999999999999987321 1234567778999999
Q ss_pred EEEec-----CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117 245 CNRWL-----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (346)
Q Consensus 245 ~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd 319 (346)
+++|+ ++++++++.||.|++||+.+++... ...+.....|...|++++|+|++ .+|++++.||.|++|+
T Consensus 209 ~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~----~~~~~~~~~~~~~v~~l~~spdg--~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 209 DVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW----KKTLLKEEKFPDVLWRASWSLSG--NVLALSGGDNKVTLWK 282 (753)
T ss_dssp EEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCC----BCCBSSSSCCSSCCCCEEECTTT--CCEEEECSSSCEECCB
T ss_pred EEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcc----eeEEeccCCCCCceEEEEEcCCC--CEEEEEcCCCEEEEEe
Confidence 99998 4689999999999999998864211 11233445578899999999999 7899999999999999
Q ss_pred cCCC
Q 019117 320 LQSS 323 (346)
Q Consensus 320 ~~~~ 323 (346)
+.++
T Consensus 283 ~~~~ 286 (753)
T 3jro_A 283 ENLE 286 (753)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 9853
No 92
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=7.4e-37 Score=250.83 Aligned_cols=234 Identities=19% Similarity=0.251 Sum_probs=184.2
Q ss_pred CCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc--eeeeeccCCCceEEEEEeCC-CCceEEEeeCCCCEEEEe
Q 019117 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPL-KPSLVVSASKDESVRLWN 157 (346)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd 157 (346)
.|...|.+++|+ |+|+ +|++|+.|++|++||+.+++ .+..+.+|.+.|.+++|+|. ++++|++|+.|++|++||
T Consensus 11 ~H~~~V~~v~~s--~~g~-~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 11 SHEDMIHDAQMD--YYGT-RLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ---CCEEEEEEC--GGGC-EEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred cccCeEEEeeEc--CCCC-EEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 488889888887 8898 99999999999999998764 46788999999999999862 478999999999999999
Q ss_pred cCCCe--eEEEecccCCCCcceEEEEecCCC-CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceE
Q 019117 158 VQTGI--CILIFAGAGGHRNEVLSVDFHPSD-IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF 234 (346)
Q Consensus 158 ~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (346)
+++++ .+..+. +|...|++++|+|++ +.+|++++.|+.|++||++..... ....
T Consensus 88 ~~~~~~~~~~~~~---~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~--------------------~~~~ 144 (316)
T 3bg1_A 88 EENGTWEKSHEHA---GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW--------------------EVKK 144 (316)
T ss_dssp CSSSCCCEEEEEC---CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE--------------------EECC
T ss_pred CCCCcceEEEEcc---CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc--------------------ceee
Confidence 98873 555665 799999999999932 789999999999999999863110 0112
Q ss_pred EEeecccceEEEEecC-------------------CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEE
Q 019117 235 IASVHSNYVDCNRWLG-------------------DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI 295 (346)
Q Consensus 235 ~~~~~~~~i~~~~~~~-------------------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 295 (346)
.+..|...|.++.|++ ++|++++.|++|++||++... ....+..+.+|...|.++
T Consensus 145 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~------~~~~~~~l~~h~~~V~~v 218 (316)
T 3bg1_A 145 INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG------QWKEEQKLEAHSDWVRDV 218 (316)
T ss_dssp BTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS------CEEEEECCBCCSSCEEEE
T ss_pred eeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC------ccceeeecccCCCceEEE
Confidence 2345666777777762 589999999999999997542 112566788899999999
Q ss_pred EEeecCC--cceEEEEcCCCcEEEEEcCCCC-----cceeeeeeeeEEEEEecCCCCC
Q 019117 296 KFSCDFH--YNAAAIGNREGKIFVWELQSSP-----PVLIARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 296 ~~s~~~~--~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~spdg~~ 346 (346)
+|+|++. ..+|++++.|+.|++|++.+.. ......+...+.+++|+|+|++
T Consensus 219 ~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~ 276 (316)
T 3bg1_A 219 AWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANI 276 (316)
T ss_dssp ECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCC
T ss_pred EecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCE
Confidence 9999861 2589999999999999998732 1223345567999999999975
No 93
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-36 Score=255.04 Aligned_cols=263 Identities=14% Similarity=0.133 Sum_probs=191.6
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (346)
+++...+.+|...|++++|+| ++++|++++.|+ |++||+.++........+ ..|...|.+++|+ |+++ +|
T Consensus 45 ~~~~~~~~~h~~~v~~~~~s~----~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~--~~~~~~v~~~~~~--~~~~-~l 115 (377)
T 3dwl_C 45 WKHARTFSDHDKIVTCVDWAP----KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL--LRLNRAATFVRWS--PNED-KF 115 (377)
T ss_dssp EEECCCBCCCSSCEEEEEECT----TTCCEEEEETTSSEEEC------CCCCEEEC--CCCSSCEEEEECC--TTSS-CC
T ss_pred eEEEEEEecCCceEEEEEEeC----CCCEEEEEeCCCeEEEEEcCCCCceeeeeEe--cccCCceEEEEEC--CCCC-EE
Confidence 367778899999999999999 789999999988 999999887622222211 2377888888877 8888 99
Q ss_pred EEeecCCeEEEEEccCcc---eeeeecc-CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC-----------------
Q 019117 102 VAGGINGIIRVIDVSNEK---LHKSFVG-HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT----------------- 160 (346)
Q Consensus 102 ~~~~~dg~i~iwd~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----------------- 160 (346)
++++.|+.|++||+.+++ ....+.. |...|.+++|+| ++.+|++++.|+.|++||++.
T Consensus 116 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 194 (377)
T 3dwl_C 116 AVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLP 194 (377)
T ss_dssp EEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCC
T ss_pred EEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccc
Confidence 999999999999999887 4677777 999999999999 889999999999999999853
Q ss_pred -CeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeec
Q 019117 161 -GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 239 (346)
Q Consensus 161 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (346)
++++..+ +|...|.+++|+| ++.+|++++.|+.|++||++..... ...+..+..|
T Consensus 195 ~~~~~~~~----~~~~~v~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~-------------------~~~~~~~~~~ 250 (377)
T 3dwl_C 195 FNTVCAEY----PSGGWVHAVGFSP-SGNALAYAGHDSSVTIAYPSAPEQP-------------------PRALITVKLS 250 (377)
T ss_dssp EEEEEECC----CCSSSEEEEEECT-TSSCEEEEETTTEEC-CEECSTTSC-------------------EEECCCEECS
T ss_pred hhhhhhcc----cCCceEEEEEECC-CCCEEEEEeCCCcEEEEECCCCCCc-------------------ceeeEeecCC
Confidence 3344444 5999999999999 8899999999999999999983210 1125567789
Q ss_pred ccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCC---C-----cc-------------c-----------------
Q 019117 240 SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPG---E-----GT-------------A----------------- 279 (346)
Q Consensus 240 ~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~---~-----~~-------------~----------------- 279 (346)
...|.+++|+ +++|++++.++.+ +|+......... . .. .
T Consensus 251 ~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (377)
T 3dwl_C 251 QLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDL 329 (377)
T ss_dssp SSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC------------------
T ss_pred CCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhh
Confidence 9999999998 6778777766655 776653220000 0 00 0
Q ss_pred -----cccccccCCCcCeeEEEEeecCCc--ceEEEEcCCCcEEEEEc
Q 019117 280 -----DILQKYPVPECDIWFIKFSCDFHY--NAAAIGNREGKIFVWEL 320 (346)
Q Consensus 280 -----~~~~~~~~~~~~v~~~~~s~~~~~--~~l~~~~~dg~i~iwd~ 320 (346)
........|...|+++++.+.... ..|++|+.||.|++||+
T Consensus 330 ~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 330 KGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 000112238899999997765421 16999999999999986
No 94
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=238.36 Aligned_cols=261 Identities=20% Similarity=0.273 Sum_probs=203.7
Q ss_pred eEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEc
Q 019117 36 LYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDV 115 (346)
Q Consensus 36 v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 115 (346)
.++|+||+ + ++||+|.++.|+|||..+++.++.+.. ..|...|.+++|. |+++ +|++|+.||.|++||+
T Consensus 28 ~~~l~WS~----~-~~lAvg~D~tV~iWd~~tg~~~~~~~~---~~~~~~V~~v~~~--~~~~-~l~sgs~Dg~v~iw~~ 96 (318)
T 4ggc_A 28 LNLVDWSS----G-NVLAVALDNSVYLWSASSGDILQLLQM---EQPGEYISSVAWI--KEGN-YLAVGTSSAEVQLWDV 96 (318)
T ss_dssp CBCEEECT----T-SEEEEEETTEEEEEETTTCCEEEEEEC---CSTTCCEEEEEEC--TTSS-EEEEEETTSEEEEEET
T ss_pred ceEEEECC----C-CEEEEEeCCEEEEEECCCCCEEEEEEe---cCCCCeEEEEEEC--CCCC-EEEEEECCCcEEEeec
Confidence 56799998 3 488888766699999999988777653 3467788888877 9998 9999999999999999
Q ss_pred cCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe-eEEEecccCCCCcceEEEEecCCCCcEEEEEe
Q 019117 116 SNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-CILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 194 (346)
Q Consensus 116 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 194 (346)
.+++.+..+.+|...+.++.+. +..+++++.++.+++|+..... .+..+. +|...+..+.+++ ++.++++++
T Consensus 97 ~~~~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~l~s~~ 169 (318)
T 4ggc_A 97 QQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLS---GHSQEVCGLRWAP-DGRHLASGG 169 (318)
T ss_dssp TTTEEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEE---CCSSCEEEEEECT-TSSEEEEEE
T ss_pred CCceeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEc---CccCceEEEEEcC-CCCEEEEEe
Confidence 9999999999999998887765 4799999999999999988654 445555 7999999999998 889999999
Q ss_pred cCCeEEEEEccccceeeeeceeecCCCC----------CC---------CCc------cceeceEEEeecccceEEEEec
Q 019117 195 MDNTVKIWSMKEFWTYVEKSFTWTDLPS----------KF---------PTK------YVQFPVFIASVHSNYVDCNRWL 249 (346)
Q Consensus 195 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~----------~~---------~~~------~~~~~~~~~~~~~~~i~~~~~~ 249 (346)
.|+.|++||+++.+.............. .. ... ...........+...+..+.|.
T Consensus 170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~ 249 (318)
T 4ggc_A 170 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWS 249 (318)
T ss_dssp TTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEE
T ss_pred cCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeec
Confidence 9999999999874432111111110000 00 000 0011123344566778888887
Q ss_pred --CCEEEEEe--ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCc
Q 019117 250 --GDFILSKS--VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP 325 (346)
Q Consensus 250 --~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~ 325 (346)
++.+++++ .|+.|++||+++++ ++..+.+|.+.|++++|+|++ .+|++|+.||.|+|||+.+.+|
T Consensus 250 ~~~~~~~~~sg~~d~~i~iwd~~~~~---------~~~~l~gH~~~V~~l~~spdg--~~l~S~s~D~~v~iWd~~~~dP 318 (318)
T 4ggc_A 250 PHYKELISGHGFAQNQLVIWKYPTMA---------KVAELKGHTSRVLSLTMSPDG--ATVASAAADETLRLWRCFELDP 318 (318)
T ss_dssp TTTTEEEEEECTTTCCEEEEETTTCC---------EEEEECCCSSCEEEEEECTTS--SCEEEEETTTEEEEECCSCCCC
T ss_pred ccccceEEEEEcCCCEEEEEECCCCc---------EEEEEcCCCCCEEEEEEcCCC--CEEEEEecCCeEEEEECCCCCC
Confidence 66666544 79999999999877 788899999999999999999 7999999999999999987654
No 95
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.4e-35 Score=269.13 Aligned_cols=255 Identities=17% Similarity=0.236 Sum_probs=218.2
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (346)
.+....+.+|..+|.+++|+| ++++||+++.++ |++||+.+++.+..+.. |...|.+++|+ |+++ +|
T Consensus 45 ~~~~~~~~~~~~~v~~~~~s~----~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-----~~~~v~~~~~s--~~~~-~l 112 (814)
T 3mkq_A 45 QVEVRSIQVTETPVRAGKFIA----RKNWIIVGSDDFRIRVFNYNTGEKVVDFEA-----HPDYIRSIAVH--PTKP-YV 112 (814)
T ss_dssp TEEEEEEECCSSCEEEEEEEG----GGTEEEEEETTSEEEEEETTTCCEEEEEEC-----CSSCEEEEEEC--SSSS-EE
T ss_pred CceEEEEecCCCcEEEEEEeC----CCCEEEEEeCCCeEEEEECCCCcEEEEEec-----CCCCEEEEEEe--CCCC-EE
Confidence 456677889999999999999 789999999988 99999999888777754 67788888877 8998 99
Q ss_pred EEeecCCeEEEEEccCc-ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117 102 VAGGINGIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180 (346)
Q Consensus 102 ~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 180 (346)
++++.||.|++||+.++ .....+.+|...|.+++|+|.++..|++++.||.|++||+.+++....+.. .+...+.++
T Consensus 113 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--~~~~~v~~~ 190 (814)
T 3mkq_A 113 LSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT--GQERGVNYV 190 (814)
T ss_dssp EEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEEC--CCTTCCCEE
T ss_pred EEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEec--CCCCCEEEE
Confidence 99999999999999887 677788899999999999996678999999999999999998887777762 345889999
Q ss_pred EecCC-CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe
Q 019117 181 DFHPS-DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS 257 (346)
Q Consensus 181 ~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~ 257 (346)
+|+|. ++.++++++.||.|++||++. ...+..+..|...|.++.|+ ++++++++
T Consensus 191 ~~~~~~~~~~l~~~~~dg~i~~~d~~~-----------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 247 (814)
T 3mkq_A 191 DYYPLPDKPYMITASDDLTIKIWDYQT-----------------------KSCVATLEGHMSNVSFAVFHPTLPIIISGS 247 (814)
T ss_dssp EECCSTTCCEEEEECTTSEEEEEETTT-----------------------TEEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCC-----------------------CcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 99972 567899999999999999987 34566778899999999998 77999999
Q ss_pred ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
.||.|++||+.+++ .+..+..+...+.+++|+|++. ..+++++.++.+.+|++..+.
T Consensus 248 ~dg~v~vwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 248 EDGTLKIWNSSTYK---------VEKTLNVGLERSWCIATHPTGR-KNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp TTSCEEEEETTTCS---------EEEEECCSSSSEEEEEECTTCG-GGEEEEEETTEEEEEECSCCS
T ss_pred CCCeEEEEECCCCc---------EEEEeecCCCcEEEEEEccCCC-ceEEEEEeCCCEEEEEcCCCC
Confidence 99999999999876 6777888888999999999985 333444456778899987654
No 96
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.4e-35 Score=260.96 Aligned_cols=258 Identities=16% Similarity=0.189 Sum_probs=219.8
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccC----ceeeeEeeeecCCCccc-eEEEEEEEcC--CCCcEEE
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEG----GVIAALQSYVDEDKEES-FYTVSWACNV--DGIPFLV 102 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~----~~~~~~~~~~~~~~~~~-v~~~~~~~~~--~~~~~l~ 102 (346)
..|.+.|.+++|+| ++++||+++++.|.+|++.++ +....+. .|... |.+++|+ | +++ +|+
T Consensus 15 ~~~~~~v~~~~~sp----dg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~-----~h~~~~v~~~~~s--p~~~~~-~l~ 82 (615)
T 1pgu_A 15 STQRNFTTHLSYDP----TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT-----GHGSSVVTTVKFS--PIKGSQ-YLC 82 (615)
T ss_dssp CCCTTCCCCCEEET----TTTEEEEEETTEEEEEECCSSCCSSCSEEEEC-----TTTTSCEEEEEEC--SSTTCC-EEE
T ss_pred CCccCceeEEEECC----CCCEEEEecCCeEEEEECCCCCCccccceEEe-----cCCCceEEEEEEC--cCCCCC-EEE
Confidence 46889999999999 789999999666999999987 6655554 37778 9888887 8 898 999
Q ss_pred EeecCCeEEEEEccCc--------ceeeeeccCCCceEEEEEeCCCCceEEEeeCC----CCEEEEecCCCeeEEEeccc
Q 019117 103 AGGINGIIRVIDVSNE--------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKD----ESVRLWNVQTGICILIFAGA 170 (346)
Q Consensus 103 ~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~ 170 (346)
+++.||.|++||+.++ +....+..|...|.+++|+| ++.+|++++.+ +.|.+|| .++.+..+.
T Consensus 83 s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~-- 157 (615)
T 1pgu_A 83 SGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVS-- 157 (615)
T ss_dssp EEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETT--TCCEEEECC--
T ss_pred EecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeC-CCCEEEEeccCCCCccEEEEEE--CCCcceeee--
Confidence 9999999999999754 67778888999999999999 88999999987 6888888 567777777
Q ss_pred CCCCcceEEEEecCCCCc-EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc---ceEEE
Q 019117 171 GGHRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN---YVDCN 246 (346)
Q Consensus 171 ~~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~ 246 (346)
+|...|.+++|+| ++. ++++++.|+.|++||+.. ...+..+..|.. .|.++
T Consensus 158 -~~~~~v~~~~~~~-~~~~~l~~~~~d~~v~vwd~~~-----------------------~~~~~~~~~~~~~~~~v~~~ 212 (615)
T 1pgu_A 158 -GHSQRINACHLKQ-SRPMRSMTVGDDGSVVFYQGPP-----------------------FKFSASDRTHHKQGSFVRDV 212 (615)
T ss_dssp -SCSSCEEEEEECS-SSSCEEEEEETTTEEEEEETTT-----------------------BEEEEEECSSSCTTCCEEEE
T ss_pred -cCCccEEEEEECC-CCCcEEEEEeCCCcEEEEeCCC-----------------------cceeeeecccCCCCceEEEE
Confidence 7999999999999 554 899999999999999987 345667778888 99999
Q ss_pred Eec---CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccc-c---CCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117 247 RWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY-P---VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (346)
Q Consensus 247 ~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~---~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd 319 (346)
+|+ +++|++++.|+.|++||+.+++ .+..+ . .|...|.+++|+ ++ .+|++++.||.|++||
T Consensus 213 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------~~~~~~~~~~~~~~~v~~~~~~-~~--~~l~~~~~d~~i~~wd 280 (615)
T 1pgu_A 213 EFSPDSGEFVITVGSDRKISCFDGKSGE---------FLKYIEDDQEPVQGGIFALSWL-DS--QKFATVGADATIRVWD 280 (615)
T ss_dssp EECSTTCCEEEEEETTCCEEEEETTTCC---------EEEECCBTTBCCCSCEEEEEES-SS--SEEEEEETTSEEEEEE
T ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCC---------EeEEecccccccCCceEEEEEc-CC--CEEEEEcCCCcEEEEE
Confidence 998 5699999999999999998876 55666 4 788999999999 87 7999999999999999
Q ss_pred cCCCCcceeeeee-----eeEEEEEec
Q 019117 320 LQSSPPVLIARLI-----CFSLHVKYN 341 (346)
Q Consensus 320 ~~~~~~~~~~~~~-----~~~~~~~~s 341 (346)
+.+++.+..+... ..+.++.|+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (615)
T 1pgu_A 281 VTTSKCVQKWTLDKQQLGNQQVGVVAT 307 (615)
T ss_dssp TTTTEEEEEEECCTTCGGGCEEEEEEE
T ss_pred CCCCcEEEEEcCCCCcccCceeEEEeC
Confidence 9998776665554 345666664
No 97
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-35 Score=250.92 Aligned_cols=260 Identities=19% Similarity=0.293 Sum_probs=215.9
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCC----------CccceEEEEE
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDED----------KEESFYTVSW 91 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~ 91 (346)
.+....+.+|...|.+++|+| ++.+|++++.++ |++||+.+++....+....... ....+.+++|
T Consensus 139 ~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (425)
T 1r5m_A 139 GALLNVLNFHRAPIVSVKWNK----DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEW 214 (425)
T ss_dssp SCEEEEECCCCSCEEEEEECT----TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEE
T ss_pred CCeeeeccCCCccEEEEEECC----CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEE
Confidence 456667789999999999999 788999999888 9999998888777665422110 0001666666
Q ss_pred EEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccC
Q 019117 92 ACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG 171 (346)
Q Consensus 92 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 171 (346)
. +++ .+++++.+|.|++||+.+++.+..+..|...|.+++|+| ++.+|++++.|+.|++||+++++.+..+.
T Consensus 215 ~--~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--- 286 (425)
T 1r5m_A 215 V--DDD--KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLLSASDDGTLRIWHGGNGNSQNCFY--- 286 (425)
T ss_dssp E--ETT--EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEECSSSBSCSEEEC---
T ss_pred c--CCC--EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCccceEec---
Confidence 5 665 688999999999999999999999999999999999999 88899999999999999999999888887
Q ss_pred CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--
Q 019117 172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-- 249 (346)
Q Consensus 172 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 249 (346)
.|...|.+++|+| ++ ++++++.|+.|++||++. ...+..+..|...|.++.|+
T Consensus 287 ~~~~~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~~-----------------------~~~~~~~~~~~~~i~~~~~s~~ 341 (425)
T 1r5m_A 287 GHSQSIVSASWVG-DD-KVISCSMDGSVRLWSLKQ-----------------------NTLLALSIVDGVPIFAGRISQD 341 (425)
T ss_dssp CCSSCEEEEEEET-TT-EEEEEETTSEEEEEETTT-----------------------TEEEEEEECTTCCEEEEEECTT
T ss_pred CCCccEEEEEECC-CC-EEEEEeCCCcEEEEECCC-----------------------CcEeEecccCCccEEEEEEcCC
Confidence 7999999999999 66 999999999999999987 34566777899999999998
Q ss_pred CCEEEEEeecCeEEEEcCCCCCCCCC-----------CccccccccccCCCc--CeeEEEEeecCCcceEEEEcCCCcEE
Q 019117 250 GDFILSKSVDNEIVLWEPKMKEQSPG-----------EGTADILQKYPVPEC--DIWFIKFSCDFHYNAAAIGNREGKIF 316 (346)
Q Consensus 250 ~~~l~~~~~d~~i~iwd~~~~~~~~~-----------~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~~l~~~~~dg~i~ 316 (346)
+++|++++.||.|++||+.+.+.... ......+..+..|.. .|.+++|+|++ .+|++++.||.|+
T Consensus 342 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~ 419 (425)
T 1r5m_A 342 GQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG--NKISVAYSLQEGS 419 (425)
T ss_dssp SSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTS--SEEEEEESSSCCE
T ss_pred CCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCC--ceEEEEecCceEE
Confidence 78999999999999999987641000 001115667777866 99999999999 6899999999999
Q ss_pred EEEcC
Q 019117 317 VWELQ 321 (346)
Q Consensus 317 iwd~~ 321 (346)
+||++
T Consensus 420 iw~~~ 424 (425)
T 1r5m_A 420 VVAIP 424 (425)
T ss_dssp EEECC
T ss_pred EEeec
Confidence 99986
No 98
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.9e-35 Score=248.33 Aligned_cols=255 Identities=15% Similarity=0.175 Sum_probs=205.5
Q ss_pred eeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc-------eeeeEeeeecCCCccceEEEEEEEcC
Q 019117 24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG-------VIAALQSYVDEDKEESFYTVSWACNV 95 (346)
Q Consensus 24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~ 95 (346)
+....+.+|.+.|++++|+|. ++.+||+++.|+ |++|++.++. .+..+. .|...|.+++|. |
T Consensus 72 ~~~~~~~~h~~~V~~~~~~p~---~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~--p 141 (402)
T 2aq5_A 72 KNVPLVCGHTAPVLDIAWCPH---NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE-----GHTKRVGIVAWH--P 141 (402)
T ss_dssp TTCCCBCCCSSCEEEEEECTT---CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE-----CCSSCEEEEEEC--S
T ss_pred CCCceEecCCCCEEEEEeCCC---CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec-----CCCCeEEEEEEC--c
Confidence 344567899999999999982 468999999998 9999998873 344444 377889888887 8
Q ss_pred CCCcEEEEeecCCeEEEEEccCcceeeee--ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEe-cccCC
Q 019117 96 DGIPFLVAGGINGIIRVIDVSNEKLHKSF--VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF-AGAGG 172 (346)
Q Consensus 96 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~ 172 (346)
++..+|++++.||.|++||+.+++.+..+ ..|...|.+++|+| ++.+|++++.|+.|++||+++++.+..+ . .
T Consensus 142 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~ 217 (402)
T 2aq5_A 142 TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKDR---P 217 (402)
T ss_dssp SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEEC---S
T ss_pred CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeeecc---C
Confidence 87449999999999999999999999998 88999999999999 8999999999999999999999998888 5 5
Q ss_pred CCcc-eEEEEecCCCCcEEEEE---ecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE-eecccceEEEE
Q 019117 173 HRNE-VLSVDFHPSDIYRIASC---GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SVHSNYVDCNR 247 (346)
Q Consensus 173 ~~~~-v~~~~~~~~~~~~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~ 247 (346)
|.+. +.+++|+| ++.+++++ +.|+.|++||++.... ++... ..|...+.++.
T Consensus 218 ~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~~~----------------------~~~~~~~~~~~~v~~~~ 274 (402)
T 2aq5_A 218 HEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLEE----------------------PLSLQELDTSSGVLLPF 274 (402)
T ss_dssp SCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBCSS----------------------CSEEEECCCCSSCEEEE
T ss_pred CCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCccccC----------------------CceEEeccCCCceeEEE
Confidence 7665 89999999 88999998 7899999999988321 11122 24677799999
Q ss_pred ec--CCEEE-EEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 248 WL--GDFIL-SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 248 ~~--~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
|+ +++|+ +++.|+.|++||+.+++. ....+..+. +...|.+++|+|++ .++++ .++.+++|++.+++
T Consensus 275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~-----~~~~l~~~~-~~~~v~~~~~sp~~--~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 275 FDPDTNIVYLCGKGDSSIRYFEITSEAP-----FLHYLSMFS-SKESQRGMGYMPKR--GLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp EETTTTEEEEEETTCSCEEEEEECSSTT-----CEEEEEEEC-CSSCCSEEEECCGG--GSCGG--GTEEEEEEEEETTE
T ss_pred EcCCCCEEEEEEcCCCeEEEEEecCCCc-----ceEeecccc-cCCcccceEEeccc--cccee--cceeEEEEEcCCCc
Confidence 98 67775 555799999999998752 011222233 45899999999998 56653 56799999999865
Q ss_pred c
Q 019117 325 P 325 (346)
Q Consensus 325 ~ 325 (346)
.
T Consensus 345 ~ 345 (402)
T 2aq5_A 345 C 345 (402)
T ss_dssp E
T ss_pred E
Confidence 3
No 99
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-35 Score=250.17 Aligned_cols=267 Identities=9% Similarity=-0.012 Sum_probs=198.8
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceee-------eE----------------e--eeecCCCc
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIA-------AL----------------Q--SYVDEDKE 83 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~-------~~----------------~--~~~~~~~~ 83 (346)
+.-...|.+|+|+| ||+++|+++.|+ |+ |...++.+. .+ . ......+.
T Consensus 12 ~~~~~~v~sv~~Sp----DG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~ 85 (588)
T 2j04_A 12 KEFEDWKNNLTWAR----DGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPV 85 (588)
T ss_dssp CCCSSSSCCEEECT----TSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCS
T ss_pred hHhhccEEEEEECC----CCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCC
Confidence 34567899999999 889999999998 65 544333220 00 0 00011245
Q ss_pred cceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCC-----ceEEEEEeCCCCceEEEeeCCCCEEEEec
Q 019117 84 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD-----SINEIRTQPLKPSLVVSASKDESVRLWNV 158 (346)
Q Consensus 84 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~s~~~d~~i~iwd~ 158 (346)
..|.+++|+ |+|+ +||+++.||.|++||.+. .+..+. |.. .|.+++|+| ++++|++|+.||+|++||+
T Consensus 86 ~~V~~vawS--PdG~-~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~ 158 (588)
T 2j04_A 86 CYPRVCKPS--PIDD-WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSI 158 (588)
T ss_dssp CCEEEEEEC--SSSS-CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEEC
T ss_pred CcEEEEEEC--CCCC-EEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEEC
Confidence 668777776 9999 999999999999999544 566666 665 599999999 9999999999999999999
Q ss_pred CCCee-------EEEecc-cCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccce
Q 019117 159 QTGIC-------ILIFAG-AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ 230 (346)
Q Consensus 159 ~~~~~-------~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (346)
.+++. +..+.. ..+|...|.+++|+| ++ +++++.|++|++||+..... .
T Consensus 159 ~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~--------------------~ 215 (588)
T 2j04_A 159 RKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSH--------------------Q 215 (588)
T ss_dssp CCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSS--------------------C
T ss_pred CCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCcc--------------------c
Confidence 98752 455521 126889999999999 77 88889999999999987221 1
Q ss_pred eceEEE-eecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEE--eecCCcceEE
Q 019117 231 FPVFIA-SVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF--SCDFHYNAAA 307 (346)
Q Consensus 231 ~~~~~~-~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~~~l~ 307 (346)
.....+ ..|...|.+++|+++.|++++ +++|++||+.+++ ......+|...|..++| +|++ ..|+
T Consensus 216 ~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~---------~~~~~~gh~~~V~~va~~~s~d~--~~La 283 (588)
T 2j04_A 216 PVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYS---------ISSLKTGSLENFHIIPLNHEKES--TILL 283 (588)
T ss_dssp CCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTE---------EEEEECSCCSCCCEEEETTCSSC--EEEE
T ss_pred cceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCe---------EEEEEcCCCceEEEEEeeeCCCC--CEEE
Confidence 122345 368889999999988999987 6999999999875 21222278999999999 9999 7899
Q ss_pred EEcCCCcEEEEEcCC------C-----------------CcceeeeeeeeEEEEEecCCCC
Q 019117 308 IGNREGKIFVWELQS------S-----------------PPVLIARLICFSLHVKYNPQSV 345 (346)
Q Consensus 308 ~~~~dg~i~iwd~~~------~-----------------~~~~~~~~~~~~~~~~~spdg~ 345 (346)
++++||. ++|.... + .....+.....+.+++|||||+
T Consensus 284 ~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~ 343 (588)
T 2j04_A 284 MSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGY 343 (588)
T ss_dssp ECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSS
T ss_pred EEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCC
Confidence 9999999 8888621 1 1112222233478899999996
No 100
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-35 Score=244.59 Aligned_cols=229 Identities=17% Similarity=0.196 Sum_probs=193.6
Q ss_pred CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEcc--CcceeeeeccCCCceEEEEEeCCC--CceEEEeeCCCCEEEEe
Q 019117 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS--NEKLHKSFVGHGDSINEIRTQPLK--PSLVVSASKDESVRLWN 157 (346)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd 157 (346)
|...|.+++|+ |+++ +|++|+.||.|++||+. +++.+..+.+|...|.+++|++ + +.+|++++.||.|++||
T Consensus 10 h~~~v~~~~~s--~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~v~iwd 85 (379)
T 3jrp_A 10 HNELIHDAVLD--YYGK-RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWK 85 (379)
T ss_dssp CCCCEEEEEEC--SSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSCEEEEE
T ss_pred CcccEEEEEEc--CCCC-EEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC-CCCCCEEEEeccCCEEEEEE
Confidence 78889888887 8998 99999999999999998 5677788999999999999987 5 89999999999999999
Q ss_pred cCCCe--eEEEecccCCCCcceEEEEecCCC--CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceece
Q 019117 158 VQTGI--CILIFAGAGGHRNEVLSVDFHPSD--IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 233 (346)
Q Consensus 158 ~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (346)
+.+++ .+..+. .|...|.+++|+| + +.++++++.|+.|++||++... ....
T Consensus 86 ~~~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~---------------------~~~~ 140 (379)
T 3jrp_A 86 EENGRWSQIAVHA---VHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENG---------------------TTSP 140 (379)
T ss_dssp EETTEEEEEEEEC---CCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTS---------------------CCCE
T ss_pred cCCCceeEeeeec---CCCcceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCC---------------------ceee
Confidence 99887 566666 6999999999999 6 8899999999999999998732 1234
Q ss_pred EEEeecccceEEEEec---------------CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEe
Q 019117 234 FIASVHSNYVDCNRWL---------------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS 298 (346)
Q Consensus 234 ~~~~~~~~~i~~~~~~---------------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 298 (346)
..+..|...|.++.|+ +.++++++.|+.|++||+++.+. .......+..|...|.+++|+
T Consensus 141 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~h~~~v~~~~~s 215 (379)
T 3jrp_A 141 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-----TYVLESTLEGHSDWVRDVAWS 215 (379)
T ss_dssp EEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT-----EEEEEEEECCCSSCEEEEEEC
T ss_pred EEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc-----ceeeEEEEecccCcEeEEEEC
Confidence 4567899999999997 36899999999999999987642 122456777899999999999
Q ss_pred ec---CCcceEEEEcCCCcEEEEEcCCCCcceee------eeeeeEEEEEecCCCCC
Q 019117 299 CD---FHYNAAAIGNREGKIFVWELQSSPPVLIA------RLICFSLHVKYNPQSVY 346 (346)
Q Consensus 299 ~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~~~~~~~spdg~~ 346 (346)
|+ + .+|++++.||.|++||+.+++..... .....+.+++|+|+|++
T Consensus 216 p~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 270 (379)
T 3jrp_A 216 PTVLLR--SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV 270 (379)
T ss_dssp CCCSSS--EEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCC
T ss_pred CCCCCC--CeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCE
Confidence 99 6 79999999999999999987532211 14456899999999975
No 101
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.1e-34 Score=241.68 Aligned_cols=254 Identities=10% Similarity=0.054 Sum_probs=185.3
Q ss_pred eeeecccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117 25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (346)
Q Consensus 25 ~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 104 (346)
+...+.+|.+.|++++|+| ++++||+|+.+++++|+..++....... ...+..+++. ++++.+++++
T Consensus 11 ~~~~~~~h~~~V~~v~fs~----dg~~la~g~~~~~~iw~~~~~~~~~~~~-------~~~~~~~~~~--~~~~~~~~~~ 77 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQ----DQSCLILSTLKSFEIYNVHPVAHIMSQE-------MRHLSKVRML--HRTNYVAFVT 77 (355)
T ss_dssp --------CCCCCEEEECT----TSSEEEEECSSEEEEEEETTEEEEEEEE-------CSCCCEEEEC--TTSSEEEEEC
T ss_pred CccccccCCCceEEEEECC----CCCEEEEEcCCEEEEEecCCcceeeeee-------cCCeEEEEEc--CCCCEEEEEE
Confidence 3445688999999999999 7899999999999999987665443322 1135556666 5565244678
Q ss_pred ecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC-eeEEEecccCCCCcceEEEEec
Q 019117 105 GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-ICILIFAGAGGHRNEVLSVDFH 183 (346)
Q Consensus 105 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~ 183 (346)
+.|+.|++||+.+++.+..+. +...|.+++|++ + .++++. |+.|++||+.++ +.+..+. . ....++++
T Consensus 78 ~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~-~--~~~~~~-~~~i~i~d~~~~~~~~~~~~---~---~~~~~~~s 146 (355)
T 3vu4_A 78 GVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSR-E--FIVVSY-GDVISVFKFGNPWKRITDDI---R---FGGVCEFS 146 (355)
T ss_dssp SSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECS-S--EEEEEE-TTEEEEEESSTTCCBSSCCE---E---EEEEEEEE
T ss_pred CCccEEEEEECCCCcEEEEEE-CCCceEEEEEcC-C--EEEEEE-cCEEEEEECCCCceeeEEec---c---CCceEEEE
Confidence 888999999999999988887 677999999987 3 344443 789999999988 6666665 2 44456666
Q ss_pred CCCCcEEEE--EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceec-eEEEeecccceEEEEec--CCEEEEEee
Q 019117 184 PSDIYRIAS--CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP-VFIASVHSNYVDCNRWL--GDFILSKSV 258 (346)
Q Consensus 184 ~~~~~~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~--~~~l~~~~~ 258 (346)
+ .+++. |+.||.|++||++.......... ........+ +..+..|...|.+++|+ +++|++++.
T Consensus 147 ~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~--------~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~ 215 (355)
T 3vu4_A 147 N---GLLVYSNEFNLGQIHITKLQSSGSATTQDQ--------GVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ 215 (355)
T ss_dssp T---TEEEEEESSCTTCEEEEECCC--------------------------CCEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred c---cEEEEeCCCcCcEEEEEECCCCCccccccc--------cccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC
Confidence 5 34444 68899999999987331100000 000000123 66788999999999998 889999999
Q ss_pred cCe-EEEEcCCCCCCCCCCcccccccccc-C-CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 259 DNE-IVLWEPKMKEQSPGEGTADILQKYP-V-PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 259 d~~-i~iwd~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
|++ |++||+++++ .+..+. + |...|.+++|+|++ .+|++++.|+.|++||+..+.
T Consensus 216 d~~~v~iwd~~~~~---------~~~~~~~g~h~~~v~~~~~s~~~--~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 216 DGTIIRVFKTEDGV---------LVREFRRGLDRADVVDMKWSTDG--SKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp TCSEEEEEETTTCC---------EEEEEECTTCCSCEEEEEECTTS--CEEEEEETTCEEEEEESSCCS
T ss_pred CCCEEEEEECCCCc---------EEEEEEcCCCCCcEEEEEECCCC--CEEEEEECCCEEEEEEccCCC
Confidence 998 9999999876 667776 4 88999999999999 799999999999999998764
No 102
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=8.6e-35 Score=245.64 Aligned_cols=305 Identities=15% Similarity=0.128 Sum_probs=193.6
Q ss_pred CceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCce-------eeeEeeeecCCCccceEEEEEE--------------
Q 019117 34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGV-------IAALQSYVDEDKEESFYTVSWA-------------- 92 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~-------------- 92 (346)
...+++.|....+....+++.|.+++|.+|+...... ...+... .+...+..+.|.
T Consensus 16 ~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (393)
T 4gq1_A 16 VRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTI---QTGLPTLHLSFSSSCSYSENLHDGDG 92 (393)
T ss_dssp CCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEE---ECSSCEEEEEECTTCEEECC------
T ss_pred CCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEE---ecCCCeeeEeecCCccccccccCCCc
Confidence 3456778865444455788888877799998653221 1111111 122233333322
Q ss_pred ----EcCCCCcEEEEeecCCeEEEEEccCccee-----eeeccCCCceEEEEEeC-------CCCceEEEeeCCCCEEEE
Q 019117 93 ----CNVDGIPFLVAGGINGIIRVIDVSNEKLH-----KSFVGHGDSINEIRTQP-------LKPSLVVSASKDESVRLW 156 (346)
Q Consensus 93 ----~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~-------~~~~~l~s~~~d~~i~iw 156 (346)
+.+++. +|++++.|++|+|||.++++.. ..+.+|.+.|++++|+| .++++|++|+.|++|+||
T Consensus 93 ~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W 171 (393)
T 4gq1_A 93 NVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW 171 (393)
T ss_dssp ----CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred ceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence 123444 8999999999999999887543 45678999999999987 256899999999999999
Q ss_pred ecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCC--CccceeceE
Q 019117 157 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP--TKYVQFPVF 234 (346)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 234 (346)
|++++.++..+. .|...|.+++|+|++..+|++++.|++|++||++..+................. .........
T Consensus 172 d~~~~~~~~~~~---~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 248 (393)
T 4gq1_A 172 RLTDEGPILAGY---PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTC 248 (393)
T ss_dssp EEETTEEEEEEE---ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC---
T ss_pred ECCCCceeeeec---CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeee
Confidence 998888777776 689999999999955578999999999999999885432221111000000000 000011122
Q ss_pred EEeecccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCccc----------cccccccCCCcCeeEEEEeecC
Q 019117 235 IASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTA----------DILQKYPVPECDIWFIKFSCDF 301 (346)
Q Consensus 235 ~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----------~~~~~~~~~~~~v~~~~~s~~~ 301 (346)
....|...+.++.|. ++.+++++.|+++++||+...+........ ........+ .......|+|..
T Consensus 249 ~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 327 (393)
T 4gq1_A 249 HSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF-PSLLGACPHPRY 327 (393)
T ss_dssp ---CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS-CCSSCCEECSSC
T ss_pred ecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc-CcceeEEEccCC
Confidence 345688889999986 789999999999999999876532111000 000111111 122233455543
Q ss_pred CcceEEEEcCCCcEEEEEcCCCCccee-eeeeeeEEEEEecCCCCC
Q 019117 302 HYNAAAIGNREGKIFVWELQSSPPVLI-ARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 302 ~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~spdg~~ 346 (346)
...++++|+.||.|++||+.+++.... ..+...+.+++|||||++
T Consensus 328 ~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~ 373 (393)
T 4gq1_A 328 MDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSH 373 (393)
T ss_dssp TTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSE
T ss_pred CCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCE
Confidence 335788899999999999999876553 445567999999999985
No 103
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=9.1e-34 Score=253.48 Aligned_cols=267 Identities=15% Similarity=0.121 Sum_probs=219.4
Q ss_pred eeeeecccCCCc-eEEEEEEeecCCCccEEEEEcCCc-EEEEEeccC--------ceeeeEeeeecCCCccceEEEEEEE
Q 019117 24 RVTNKLQEGKRP-LYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG--------GVIAALQSYVDEDKEESFYTVSWAC 93 (346)
Q Consensus 24 ~~~~~~~~h~~~-v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~ 93 (346)
+....+.+|.+. |++++|+|.+ ++++||+++.|+ |++||+.++ .....+. .+...|.+++|+
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~--~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~s- 125 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIK--GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ-----VLAGPISDISWD- 125 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSST--TCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE-----CCSSCEEEEEEC-
T ss_pred ccceEEecCCCceEEEEEECcCC--CCCEEEEecCCCEEEEEeCCCCcccccccccccchhh-----cccccEEEEEEe-
Confidence 566778999999 9999999821 468999999988 999999755 3333333 267788888777
Q ss_pred cCCCCcEEEEeecC----CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCc-eEEEeeCCCCEEEEecCCCeeEEEec
Q 019117 94 NVDGIPFLVAGGIN----GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS-LVVSASKDESVRLWNVQTGICILIFA 168 (346)
Q Consensus 94 ~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~ 168 (346)
|+++ +|++++.+ +.|.+|| .++.+..+.+|...|.+++|+| ++. .+++++.|+.|++||+.+++.+..+.
T Consensus 126 -~~~~-~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~ 200 (615)
T 1pgu_A 126 -FEGR-RLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQ-SRPMRSMTVGDDGSVVFYQGPPFKFSASDR 200 (615)
T ss_dssp -TTSS-EEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECS-SSSCEEEEEETTTEEEEEETTTBEEEEEEC
T ss_pred -CCCC-EEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECC-CCCcEEEEEeCCCcEEEEeCCCcceeeeec
Confidence 9999 99999887 6888887 6778888999999999999999 555 89999999999999999999999988
Q ss_pred ccCCCCc---ceEEEEecCCC-CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE-e---ecc
Q 019117 169 GAGGHRN---EVLSVDFHPSD-IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-S---VHS 240 (346)
Q Consensus 169 ~~~~~~~---~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~ 240 (346)
+|.. .|.+++|+| + +.++++++.|+.|++||+++ ...+..+ . .|.
T Consensus 201 ---~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~-----------------------~~~~~~~~~~~~~~~ 253 (615)
T 1pgu_A 201 ---THHKQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGKS-----------------------GEFLKYIEDDQEPVQ 253 (615)
T ss_dssp ---SSSCTTCCEEEEEECS-TTCCEEEEEETTCCEEEEETTT-----------------------CCEEEECCBTTBCCC
T ss_pred ---ccCCCCceEEEEEECC-CCCCEEEEEeCCCeEEEEECCC-----------------------CCEeEEecccccccC
Confidence 7888 999999999 7 99999999999999999987 3344555 4 789
Q ss_pred cceEEEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCC----CcCeeEEEEeecCCcceEEEEcCCCcE
Q 019117 241 NYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP----ECDIWFIKFSCDFHYNAAAIGNREGKI 315 (346)
Q Consensus 241 ~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~~~l~~~~~dg~i 315 (346)
..|.++.|+ +++|++++.|+.|++||+.+++ .+..+..+ ...+.++.|+ ++ .++++++.||.|
T Consensus 254 ~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-~~--~~l~~~~~~g~i 321 (615)
T 1pgu_A 254 GGIFALSWLDSQKFATVGADATIRVWDVTTSK---------CVQKWTLDKQQLGNQQVGVVAT-GN--GRIISLSLDGTL 321 (615)
T ss_dssp SCEEEEEESSSSEEEEEETTSEEEEEETTTTE---------EEEEEECCTTCGGGCEEEEEEE-ET--TEEEEEETTSCE
T ss_pred CceEEEEEcCCCEEEEEcCCCcEEEEECCCCc---------EEEEEcCCCCcccCceeEEEeC-CC--CeEEEEECCCCE
Confidence 999999995 8899999999999999999876 44455444 4677888886 56 689999999999
Q ss_pred EEEEcCCCCcceee-eeeeeEEEEEecCC
Q 019117 316 FVWELQSSPPVLIA-RLICFSLHVKYNPQ 343 (346)
Q Consensus 316 ~iwd~~~~~~~~~~-~~~~~~~~~~~spd 343 (346)
++||+.+++++... .+...+.+++| |+
T Consensus 322 ~~~d~~~~~~~~~~~~~~~~v~~~~~-~~ 349 (615)
T 1pgu_A 322 NFYELGHDEVLKTISGHNKGITALTV-NP 349 (615)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEET-TT
T ss_pred EEEECCCCcEEEEEeCCCCCEEEEEe-cC
Confidence 99999987655433 23345777877 65
No 104
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-34 Score=237.36 Aligned_cols=244 Identities=9% Similarity=0.062 Sum_probs=180.8
Q ss_pred CccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEcc---------C
Q 019117 48 YFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS---------N 117 (346)
Q Consensus 48 ~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~---------~ 117 (346)
++.+|++|+.|+ |++||+.+++.+..+.. ..+..+.+. |+ +++++.|++|++|+.. +
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~-------~~v~~~~~~--~~----~~s~s~D~~i~~w~~~~~~~~~~~~~ 113 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTITT-------PNPRTGGEH--PA----IISRGPCNRLLLLYPGNQITILDSKT 113 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEEE-------ECCCTTCCC--CS----EEEECSTTEEEEEETTTEEEEEETTT
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEec-------CCceeeeeC--Cc----eEEecCCCeEEEEEccCceEEeecCC
Confidence 568999999999 99999999888776651 233334443 44 8899999999999765 4
Q ss_pred cceeeeec-cCCCceEEEEEeCC-CCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEec
Q 019117 118 EKLHKSFV-GHGDSINEIRTQPL-KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM 195 (346)
Q Consensus 118 ~~~~~~~~-~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 195 (346)
++.+..+. .|.+.|.+++|+|. ++.+|++++.||+|++||+++++.+..... .+...+++++|+| ++.+|++|+.
T Consensus 114 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~~~~~i~~~~~~p-dg~~lasg~~ 190 (343)
T 3lrv_A 114 NKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA--KSDVEYSSGVLHK-DSLLLALYSP 190 (343)
T ss_dssp CCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC--CSSCCCCEEEECT-TSCEEEEECT
T ss_pred cceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec--CCCCceEEEEECC-CCCEEEEEcC
Confidence 44444443 67789999999982 467999999999999999999988766642 3566899999999 9999999999
Q ss_pred CCeEEEEEccccceeeeeceeecCCCCCCCCccceece-EEEee-cccceEEEEec--CCEEEEEeecCeEEEEcCCCCC
Q 019117 196 DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV-FIASV-HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKE 271 (346)
Q Consensus 196 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~ 271 (346)
||.|++||+++.. .+ ..+.. |...|.+++|+ +.+|++++ |+.|++||+++.+
T Consensus 191 dg~i~iwd~~~~~-----------------------~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~ 246 (343)
T 3lrv_A 191 DGILDVYNLSSPD-----------------------QASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDV 246 (343)
T ss_dssp TSCEEEEESSCTT-----------------------SCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSST
T ss_pred CCEEEEEECCCCC-----------------------CCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCC
Confidence 9999999999832 23 45566 99999999998 77999999 5599999999876
Q ss_pred CCCCCccccccccccCCCcCe--eEEEEeecCCcceEEEEcC-CCcEEEEEcCCCCcceeeeeeeeEEEEEecC
Q 019117 272 QSPGEGTADILQKYPVPECDI--WFIKFSCDFHYNAAAIGNR-EGKIFVWELQSSPPVLIARLICFSLHVKYNP 342 (346)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~v--~~~~~s~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~sp 342 (346)
... .+..+..|...+ .+++|+|++ .+|++++. |+.|++|++.+....... ..+..++|+|
T Consensus 247 ~~~------~~~~~~~~~~~~~~~~~~~~~~g--~~l~~~s~~d~~i~v~~~~~~~~~~~~---~~~~~~~~~~ 309 (343)
T 3lrv_A 247 GTL------AYPTYTIPEFKTGTVTYDIDDSG--KNMIAYSNESNSLTIYKFDKKTKNWTK---DEESALCLQS 309 (343)
T ss_dssp TCB------SSCCCBC-----CCEEEEECTTS--SEEEEEETTTTEEEEEEECTTTCSEEE---EEEEECCC--
T ss_pred cce------eecccccccccccceEEEECCCC--CEEEEecCCCCcEEEEEEcccccceEe---cCceeEecCc
Confidence 311 122222233334 369999999 78999887 999999999776533222 3344555555
No 105
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.7e-33 Score=240.65 Aligned_cols=231 Identities=19% Similarity=0.301 Sum_probs=189.2
Q ss_pred CCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccC----------cceeeeeccCCCceEEEEEeCCCCceEEEeeCC
Q 019117 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN----------EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD 150 (346)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 150 (346)
.|...|.+++|+ |++..+|++++.+|.|++||+.+ .+.+..+.+|...|.+++|+|.+..+|++|+.|
T Consensus 126 ~h~~~v~~l~~~--p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 203 (430)
T 2xyi_A 126 NHEGEVNRARYM--PQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 203 (430)
T ss_dssp EESSCCSEEEEE--TTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred cCCCcEEEEEEC--CCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence 377788888887 76433999999999999999987 567788899999999999999433499999999
Q ss_pred CCEEEEecCCCee-------EEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCC
Q 019117 151 ESVRLWNVQTGIC-------ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK 223 (346)
Q Consensus 151 ~~i~iwd~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 223 (346)
|.|++||+..+.. ...+. +|...|.+++|+|.++.+|++++.|+.|++||++....
T Consensus 204 g~i~vwd~~~~~~~~~~~~~~~~~~---~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~-------------- 266 (430)
T 2xyi_A 204 HTICLWDINATPKEHRVIDAKNIFT---GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT-------------- 266 (430)
T ss_dssp SCEEEEETTSCCBGGGEEECSEEEC---CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS--------------
T ss_pred CeEEEEeCCCCCCCCceeccceeec---CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC--------------
Confidence 9999999987322 33444 79999999999997788999999999999999997310
Q ss_pred CCCccceeceEEEeecccceEEEEec--CC-EEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeec
Q 019117 224 FPTKYVQFPVFIASVHSNYVDCNRWL--GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD 300 (346)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 300 (346)
..++..+..|...|++++|+ +. ++++++.||.|++||++.... .+..+..|...|.+++|+|+
T Consensus 267 ------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~--------~~~~~~~h~~~v~~i~~sp~ 332 (430)
T 2xyi_A 267 ------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL--------KLHSFESHKDEIFQVQWSPH 332 (430)
T ss_dssp ------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--------CSEEEECCSSCEEEEEECSS
T ss_pred ------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC--------CeEEeecCCCCEEEEEECCC
Confidence 13455677899999999998 44 799999999999999997442 57777889999999999999
Q ss_pred CCcceEEEEcCCCcEEEEEcCCCC------------cceeeee---eeeEEEEEecCCCC
Q 019117 301 FHYNAAAIGNREGKIFVWELQSSP------------PVLIARL---ICFSLHVKYNPQSV 345 (346)
Q Consensus 301 ~~~~~l~~~~~dg~i~iwd~~~~~------------~~~~~~~---~~~~~~~~~spdg~ 345 (346)
++ .+|++++.||.|++||+.... +.....+ ...+.+++|+|+++
T Consensus 333 ~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 391 (430)
T 2xyi_A 333 NE-TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 391 (430)
T ss_dssp CT-TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSST
T ss_pred CC-CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCC
Confidence 85 479999999999999998732 1233333 34589999999987
No 106
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=3.8e-34 Score=241.73 Aligned_cols=258 Identities=13% Similarity=0.053 Sum_probs=179.4
Q ss_pred CccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEc------CCCCcEEEEeecCCeEEEEEccCcce
Q 019117 48 YFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACN------VDGIPFLVAGGINGIIRVIDVSNEKL 120 (346)
Q Consensus 48 ~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~~~~l~~~~~dg~i~iwd~~~~~~ 120 (346)
++.+||+++.|+ |+|||...+.............|.+.|.+++|++. .+++ +|++|+.|++|+|||+.++..
T Consensus 100 ~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~-~las~s~D~tv~~Wd~~~~~~ 178 (393)
T 4gq1_A 100 YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ-VIASVGDDCTLIIWRLTDEGP 178 (393)
T ss_dssp EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE-EEEEEETTSEEEEEEEETTEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC-EEEEEECCCeEEEEECCCCce
Confidence 567899999998 99999988766543332333568999999999841 2677 999999999999999999888
Q ss_pred eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecc----------------------cCCCCcceE
Q 019117 121 HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG----------------------AGGHRNEVL 178 (346)
Q Consensus 121 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----------------------~~~~~~~v~ 178 (346)
+..+..|...|.+++|+|.+..+|++++.|++|++||+++++....... ..+|...+.
T Consensus 179 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~ 258 (393)
T 4gq1_A 179 ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLA 258 (393)
T ss_dssp EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCS
T ss_pred eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccce
Confidence 8888889999999999995556899999999999999988765433211 125778899
Q ss_pred EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEE
Q 019117 179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILS 255 (346)
Q Consensus 179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~ 255 (346)
++.|++.++..+++++.|+++++||+............ ..................+...+..+.+. +.++++
T Consensus 259 ~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 334 (393)
T 4gq1_A 259 NVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDS----TMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATA 334 (393)
T ss_dssp EEEEETTTTCEEEEECTTSEEEEEEC-----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEE
T ss_pred eeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeee----cCccccEEEccccccccccCcceeEEEccCCCCEEEEE
Confidence 99998448999999999999999999874322111100 00000000001111222222223333332 336777
Q ss_pred EeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117 256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (346)
Q Consensus 256 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~ 322 (346)
|+.||+|++||+.+++ .......|..+|.+++|+||| ++||+++.+| +.+|.+..
T Consensus 335 gs~Dg~V~lwd~~~~~---------~~~~~~~~~~~V~svafspdG--~~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 335 HSQHGLIQLINTYEKD---------SNSIPIQLGMPIVDFCWHQDG--SHLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp ETTTTEEEEEETTCTT---------CCEEEEECSSCEEEEEECTTS--SEEEEEESSE-EEEEEEGG
T ss_pred ECCCCEEEEEECCCCc---------EEEEecCCCCcEEEEEEcCCC--CEEEEEeCCC-eEEEEEeC
Confidence 8889999999999876 455556677899999999999 7899998766 66776654
No 107
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-33 Score=257.37 Aligned_cols=265 Identities=13% Similarity=0.157 Sum_probs=194.2
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 108 (346)
.+|.+.|++++|+| ++.+||+|+.|+ |+||+....+....+ .+...|.+++|+ | |+ +|++++.|+
T Consensus 14 ~gh~~~V~~lafsp----dg~~lAsgs~Dg~I~lw~~~~~~~~~~~------~~~~~V~~l~fs--p-g~-~L~S~s~D~ 79 (902)
T 2oaj_A 14 YGMSSKPIAAAFDF----TQNLLAIATVTGEVHIYGQQQVEVVIKL------EDRSAIKEMRFV--K-GI-YLVVINAKD 79 (902)
T ss_dssp EECSSCEEEEEEET----TTTEEEEEETTSEEEEECSTTCEEEEEC------SSCCCEEEEEEE--T-TT-EEEEEETTC
T ss_pred cCCCCCcEEEEECC----CCCEEEEEeCCCEEEEEeCCCcEEEEEc------CCCCCEEEEEEc--C-CC-EEEEEECcC
Confidence 58999999999999 789999999998 999997665443322 256789888887 7 77 999999999
Q ss_pred eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEE-Ee-------cccCCCCcceEEE
Q 019117 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL-IF-------AGAGGHRNEVLSV 180 (346)
Q Consensus 109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~-------~~~~~~~~~v~~~ 180 (346)
+|++||+.+++.+..+. |...|++++|+| ++++|++|+.||+|++||+++++... .+ ....+|.+.|+++
T Consensus 80 ~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl 157 (902)
T 2oaj_A 80 TVYVLSLYSQKVLTTVF-VPGKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSI 157 (902)
T ss_dssp EEEEEETTTCSEEEEEE-CSSCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEE
T ss_pred eEEEEECCCCcEEEEEc-CCCCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEE
Confidence 99999999999888886 778999999999 89999999999999999999887641 11 1223789999999
Q ss_pred EecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEee
Q 019117 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV 258 (346)
Q Consensus 181 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~ 258 (346)
+|+|++...+++|+.|+.| +||++..+............... .... ......|...|.+++|+ |++|++++.
T Consensus 158 ~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~--~~~~---~~~~~~h~~~V~~v~fspdg~~lasgs~ 231 (902)
T 2oaj_A 158 QWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPG--GDFS---EKTNEKRTPKVIQSLYHPNSLHIITIHE 231 (902)
T ss_dssp EEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCC--STTC---CCTTSCBCCCEEEEEECTTSSEEEEEET
T ss_pred EEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCC--cccc---cccccccCCCeEEEEEcCCCCEEEEEEC
Confidence 9999556889999999999 99998843221111000000000 0000 00112356789999998 889999999
Q ss_pred cCeEEEEcCCCCCCCCCCcccccccccc-------------CCCcCeeEEEEeecCC---cceEEEEcCC-----CcEEE
Q 019117 259 DNEIVLWEPKMKEQSPGEGTADILQKYP-------------VPECDIWFIKFSCDFH---YNAAAIGNRE-----GKIFV 317 (346)
Q Consensus 259 d~~i~iwd~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~s~~~~---~~~l~~~~~d-----g~i~i 317 (346)
|++|++||+++++..... .+.... .+...|.+++|++... ..+|++|+.| ..+.+
T Consensus 232 Dg~i~lWd~~~g~~~~~r----~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~ 307 (902)
T 2oaj_A 232 DNSLVFWDANSGHMIMAR----TVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTM 307 (902)
T ss_dssp TCCEEEEETTTCCEEEEE----CSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEE
T ss_pred CCeEEEEECCCCcEEEEE----eecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEE
Confidence 999999999887631100 000000 1345799999976321 1467888665 37999
Q ss_pred EEc
Q 019117 318 WEL 320 (346)
Q Consensus 318 wd~ 320 (346)
|++
T Consensus 308 ~~~ 310 (902)
T 2oaj_A 308 IDL 310 (902)
T ss_dssp EEE
T ss_pred Eec
Confidence 985
No 108
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=8.4e-33 Score=220.80 Aligned_cols=267 Identities=10% Similarity=0.103 Sum_probs=179.7
Q ss_pred ccceeeeeecccCCCc----eEEEEEEeecCCCccEEEEEcCCcEEEEEeccCc---eeeeEeeeecC------------
Q 019117 20 KREYRVTNKLQEGKRP----LYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGG---VIAALQSYVDE------------ 80 (346)
Q Consensus 20 ~~~~~~~~~~~~h~~~----v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~---~~~~~~~~~~~------------ 80 (346)
...+++..+|+...+. +.++.|-. .+-....++++++..|++|+..++. .+..+..+..+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 100 (356)
T 2w18_A 22 PGNLQLVSELKNPSGSCSVDVSAMFWER-AGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYN 100 (356)
T ss_dssp --CEEEEEEECCCCSSCEEEEEEEEEC-----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCS
T ss_pred cceeeeeehhcCCCCCeEEEEeeeeecc-CCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccc
Confidence 3456777777665443 33444433 2212347888989999999999983 34333322110
Q ss_pred --------CCccceEEEEEEEcCC----CCcEEEEeec--------------------CCeEEEEEc-cCcceeeeeccC
Q 019117 81 --------DKEESFYTVSWACNVD----GIPFLVAGGI--------------------NGIIRVIDV-SNEKLHKSFVGH 127 (346)
Q Consensus 81 --------~~~~~v~~~~~~~~~~----~~~~l~~~~~--------------------dg~i~iwd~-~~~~~~~~~~~~ 127 (346)
-+...|..+++ +|+ ++ .+++++. |+.|++|++ .+++.+..+.+|
T Consensus 101 ~~~~~~~~~~~~~v~sla~--spd~~~~~~-~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~ 177 (356)
T 2w18_A 101 LVCVALGNLEIREIRALFC--SSDDESEKQ-VLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLM 177 (356)
T ss_dssp CEEEEECSSSEEEEEEECC--------CCE-EEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEEC
T ss_pred eeeeeeccccccceEEEEE--CCCcccccc-EEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccC
Confidence 01123444444 477 66 6666553 788888888 447777777788
Q ss_pred CCceEEEEEeCC--CCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEE------------EEE
Q 019117 128 GDSINEIRTQPL--KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI------------ASC 193 (346)
Q Consensus 128 ~~~v~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l------------~s~ 193 (346)
...+..++|+|. ++.+|++++.|++|+|||++++++++++.....+...+.+++|+| ++.++ ++|
T Consensus 178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSG 256 (356)
T 2w18_A 178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLR 256 (356)
T ss_dssp CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE-TTEEEEEEC-----------
T ss_pred CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeecc
Confidence 888888888772 567999999999999999999999999973111234778889999 77765 567
Q ss_pred ecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCC
Q 019117 194 GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQS 273 (346)
Q Consensus 194 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 273 (346)
+.|++|++||..+.+........ ...+|...+.+..+++.++++++.|++|+|||+.+++
T Consensus 257 s~D~tIklWd~~tgk~l~v~~~~------------------~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk-- 316 (356)
T 2w18_A 257 SPVFQLIVINPKTTLSVGVMLYC------------------LPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQ-- 316 (356)
T ss_dssp -CCEEEEEEETTTTEEEEEEEEC------------------CCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCS--
T ss_pred CCCcEEEEEECCCCEEEEEEEee------------------ccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCc--
Confidence 88999999999874321100000 0124444455556668899999999999999999987
Q ss_pred CCCccccccccccCCCcCee-EEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117 274 PGEGTADILQKYPVPECDIW-FIKFSCDFHYNAAAIGNREGKIFVWEL 320 (346)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~~~l~~~~~dg~i~iwd~ 320 (346)
.+.++.+|...+. .++|+||+ ++|++|+.|++|+|||+
T Consensus 317 -------~l~tL~gH~~~vvs~vafSPDG--~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 317 -------CTALLPPVSDQHWSFVKWSGTD--SHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp -------EEEEECCC--CCCCEEEECSSS--SEEEEECTTSCEEEEEE
T ss_pred -------EEEEecCCCCCeEEEEEECCCC--CEEEEEECCCcEEEecC
Confidence 7888888876655 58999999 79999999999999996
No 109
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=6.3e-33 Score=238.66 Aligned_cols=262 Identities=13% Similarity=0.160 Sum_probs=193.9
Q ss_pred cceeeeeecccCC------------CceEEEEEEeecCCCc--cEEEEEcCCc-EEEEEeccCceeee------------
Q 019117 21 REYRVTNKLQEGK------------RPLYAVVFNFIDSRYF--NVFATVGGNR-VTVYQCLEGGVIAA------------ 73 (346)
Q Consensus 21 ~~~~~~~~~~~h~------------~~v~~~~~~p~~~~~~--~~la~~~~~~-v~i~~~~~~~~~~~------------ 73 (346)
.++++...+.+|. +.|++++|+| ++ .+|++++.|+ |++|++.++.....
T Consensus 69 ~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~----~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~ 144 (447)
T 3dw8_B 69 GEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP----QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYR 144 (447)
T ss_dssp CCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC----CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC-------
T ss_pred cceeEecccccccccccccccccccCceEEEEEcC----CCCcceEEEeCCCCeEEEEecccccCCcceecccCcccccc
Confidence 4566788889998 8899999999 44 6888888888 99999876443210
Q ss_pred -----------------------EeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccC-cceee-------
Q 019117 74 -----------------------LQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN-EKLHK------- 122 (346)
Q Consensus 74 -----------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~------- 122 (346)
........|...|.+++|+ |+++ +|++| .|+.|++||+.+ ++.+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~ 220 (447)
T 3dw8_B 145 DPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN--SDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPA 220 (447)
T ss_dssp -CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC--TTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCS
T ss_pred CcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc--CCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccc
Confidence 0001113477888888887 8898 99998 799999999984 44443
Q ss_pred eeccCCCceEEEEEeCCCC-ceEEEeeCCCCEEEEecCCCee----EEEecccCCCCc------------ceEEEEecCC
Q 019117 123 SFVGHGDSINEIRTQPLKP-SLVVSASKDESVRLWNVQTGIC----ILIFAGAGGHRN------------EVLSVDFHPS 185 (346)
Q Consensus 123 ~~~~~~~~v~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~------------~v~~~~~~~~ 185 (346)
.+.+|...|.+++|+| ++ .+|++|+.||.|++||+++++. +..+. .|.. .|.+++|+|
T Consensus 221 ~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~- 295 (447)
T 3dw8_B 221 NMEELTEVITAAEFHP-NSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFE---EPEDPSNRSFFSEIISSISDVKFSH- 295 (447)
T ss_dssp SGGGCCCCEEEEEECS-SCTTEEEEEETTSCEEEEETTTCSSSCTTCEEEC---CC-----CCHHHHHTTCEEEEEECT-
T ss_pred cccccCcceEEEEECC-CCCcEEEEEeCCCeEEEEECcCCccccceeeEec---cCCCccccccccccCceEEEEEECC-
Confidence 3568999999999999 65 8999999999999999998886 66776 5665 899999999
Q ss_pred CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccc---------------eEEEEec-
Q 019117 186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY---------------VDCNRWL- 249 (346)
Q Consensus 186 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------i~~~~~~- 249 (346)
++.+|++++. +.|++||++... .++..+..|... +..++|+
T Consensus 296 ~g~~l~~~~~-~~v~iwd~~~~~----------------------~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~ 352 (447)
T 3dw8_B 296 SGRYMMTRDY-LSVKVWDLNMEN----------------------RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNG 352 (447)
T ss_dssp TSSEEEEEES-SEEEEEETTCCS----------------------SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECT
T ss_pred CCCEEEEeeC-CeEEEEeCCCCc----------------------cccceeeccccccccccccccccccccceEEEECC
Confidence 9999999998 999999998611 123344444421 2237777
Q ss_pred -CCEEEEEeecCeEEEEcCCCCCCCCCCcccc-----------------------ccccccCCCcCeeEEEEeecCCcce
Q 019117 250 -GDFILSKSVDNEIVLWEPKMKEQSPGEGTAD-----------------------ILQKYPVPECDIWFIKFSCDFHYNA 305 (346)
Q Consensus 250 -~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~v~~~~~s~~~~~~~ 305 (346)
+++|++++.||.|++||+.+++......... ...........|..++|+|++ .+
T Consensus 353 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~--~~ 430 (447)
T 3dw8_B 353 SDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKE--NI 430 (447)
T ss_dssp TSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSS--SE
T ss_pred CCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCC--CE
Confidence 7899999999999999999875321100000 000011234578999999999 78
Q ss_pred EEEEcCCCcEEEEEcC
Q 019117 306 AAIGNREGKIFVWELQ 321 (346)
Q Consensus 306 l~~~~~dg~i~iwd~~ 321 (346)
||+++.++ +++|.-+
T Consensus 431 la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 431 IAVATTNN-LYIFQDK 445 (447)
T ss_dssp EEEECSSC-EEEEECC
T ss_pred EEEEecce-eeeeccc
Confidence 99888775 7888643
No 110
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=8.2e-33 Score=234.97 Aligned_cols=229 Identities=15% Similarity=0.223 Sum_probs=187.8
Q ss_pred EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcC-CCCcEEEEeecCCeEEEEEccCcceeeeec-------------
Q 019117 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV-DGIPFLVAGGINGIIRVIDVSNEKLHKSFV------------- 125 (346)
Q Consensus 60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------- 125 (346)
+++|++..+.....+.. |...|.+++|+ | +++ +|++|+.||.|++||+.+++....+.
T Consensus 25 ~~v~~~~~~~~~~~~~~-----h~~~v~~~~~s--~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (408)
T 4a11_B 25 RRVLGLELNKDRDVERI-----HGGGINTLDIE--PVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPD 96 (408)
T ss_dssp HHHHTEEECTTEEECCC-----CSSCEEEEEEC--TTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTT
T ss_pred ceeeccccCcceeeeec-----cCCcEEEEEEe--cCCCC-EEEEEcCCCeEEEEECCCCcccceEeccccccccccccc
Confidence 67777777666555543 78899888887 8 888 99999999999999999887655443
Q ss_pred cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCC--CCcEEEEEecCCeEEEEE
Q 019117 126 GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS--DIYRIASCGMDNTVKIWS 203 (346)
Q Consensus 126 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~d~~i~iwd 203 (346)
+|...|.+++|+|.++.+|++++.||.|++||+.+++.+..+. +...+.++.++|. ++.++++++.|+.|++||
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 172 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN----FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD 172 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc----CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence 5999999999999777899999999999999999999998886 7888999999983 234999999999999999
Q ss_pred ccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CC-EEEEEeecCeEEEEcCCCCCCCCC-----
Q 019117 204 MKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD-FILSKSVDNEIVLWEPKMKEQSPG----- 275 (346)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~iwd~~~~~~~~~----- 275 (346)
++. ...+..+..|...|.+++|+ +. ++++++.||.|++||++.......
T Consensus 173 ~~~-----------------------~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~ 229 (408)
T 4a11_B 173 LKS-----------------------GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH 229 (408)
T ss_dssp SSS-----------------------SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTT
T ss_pred CCC-----------------------cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccc
Confidence 987 34566777899999999998 44 699999999999999987652110
Q ss_pred --CccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCc
Q 019117 276 --EGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP 325 (346)
Q Consensus 276 --~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~ 325 (346)
............|...|.+++|+|++ .+|++++.||.|++||+.+++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~ 279 (408)
T 4a11_B 230 NGKKSQAVESANTAHNGKVNGLCFTSDG--LHLLTVGTDNRMRLWNSSNGEN 279 (408)
T ss_dssp TTCSCCCTTTSSCSCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCB
T ss_pred ccccceeeccccccccCceeEEEEcCCC--CEEEEecCCCeEEEEECCCCcc
Confidence 01111233346688899999999999 7999999999999999988653
No 111
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.6e-32 Score=226.84 Aligned_cols=219 Identities=18% Similarity=0.275 Sum_probs=175.4
Q ss_pred CCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCc----ceeeeeccCCCceEEEEEeCC-CCceEEEeeCCCCEEE
Q 019117 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----KLHKSFVGHGDSINEIRTQPL-KPSLVVSASKDESVRL 155 (346)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~i 155 (346)
.|.+.|.+++|+ |+++ +|++|+.||.|++||+.++ +....+.+|...|.+++|+|. ++.+|++++.||.|++
T Consensus 9 gH~~~v~~~~~~--~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 9 GHDDLVHDVVYD--FYGR-HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp CCSSCEEEEEEC--SSSS-EEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred ccccceeEEEEc--CCCC-EEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 488899988887 8898 9999999999999999876 466777899999999999984 3789999999999999
Q ss_pred EecCCC---------eeEEEecccCCCCcceEEEEecCCC--CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCC
Q 019117 156 WNVQTG---------ICILIFAGAGGHRNEVLSVDFHPSD--IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF 224 (346)
Q Consensus 156 wd~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 224 (346)
||++++ +.+..+. .|...|.+++|+| + +.++++++.||.|++||++.............
T Consensus 86 wd~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~------ 155 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCTLN---DSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSE------ 155 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEEEC---CCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEE------
T ss_pred EecCCCcccccccCcceeeeec---ccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhcccccccc------
Confidence 999877 5566666 7999999999999 7 89999999999999999988432111100000
Q ss_pred CCccceeceEEEeecccceEEEEec-----CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEee
Q 019117 225 PTKYVQFPVFIASVHSNYVDCNRWL-----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC 299 (346)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 299 (346)
..........|...+.++.|+ +.++++++.|+.+.+|+....+ ...+..+.+|...|.+++|+|
T Consensus 156 ----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~h~~~i~~~~~~p 224 (351)
T 3f3f_A 156 ----MKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK-------LHVAAKLPGHKSLIRSISWAP 224 (351)
T ss_dssp ----EESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC-------EEEEEECCCCCSCEEEEEECC
T ss_pred ----ccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc-------eeeeeecCCCCcceeEEEECC
Confidence 000001112577788999986 6799999999999888877654 124677788999999999999
Q ss_pred cCCc--ceEEEEcCCCcEEEEEcCCC
Q 019117 300 DFHY--NAAAIGNREGKIFVWELQSS 323 (346)
Q Consensus 300 ~~~~--~~l~~~~~dg~i~iwd~~~~ 323 (346)
++.. .+|++++.||.|++||+.++
T Consensus 225 ~~~~~~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 225 SIGRWYQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp CSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred CCCCcceEEEEEcCCCeEEEEeCCCC
Confidence 9732 48999999999999999875
No 112
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=5e-32 Score=232.14 Aligned_cols=274 Identities=14% Similarity=0.035 Sum_probs=214.5
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (346)
++....+..+. .+.+++|+| ++.++++++.++ |++||..+++....+.......|...+.+++|. +++. ++
T Consensus 113 ~~~~~~~~~~~-~~~~~~~s~----~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~--~~~~-~~ 184 (433)
T 3bws_A 113 HRFISRFKTGF-QPKSVRFID----NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIP--EHNE-LW 184 (433)
T ss_dssp EEEEEEEECSS-CBCCCEESS----SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEG--GGTE-EE
T ss_pred ceEEEEEcCCC-CceEEEEeC----CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEc--CCCE-EE
Confidence 34455555444 456899998 578888888887 999999888776544322223466788888774 8888 99
Q ss_pred EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceE-EEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117 102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV-VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180 (346)
Q Consensus 102 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 180 (346)
++++.|+.|++||+.+++.+..+..|...+.+++|+| ++..+ ++++.|+.|++||+++++.+..+. ....+.++
T Consensus 185 ~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~----~~~~~~~~ 259 (433)
T 3bws_A 185 VSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKLEIRKTD----KIGLPRGL 259 (433)
T ss_dssp EEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTEEEEECC----CCSEEEEE
T ss_pred EEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCcEEEEec----CCCCceEE
Confidence 9999999999999999999999988999999999999 66655 566689999999999999888876 45669999
Q ss_pred EecCCCCcEEEEEe--------cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--C
Q 019117 181 DFHPSDIYRIASCG--------MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--G 250 (346)
Q Consensus 181 ~~~~~~~~~l~s~~--------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~ 250 (346)
+|+| ++..+++++ .|+.|++||+++.+ .. ....|...+.+++|+ +
T Consensus 260 ~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~-----------------------~~-~~~~~~~~~~~~~~~~~g 314 (433)
T 3bws_A 260 LLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEK-----------------------LI-DTIGPPGNKRHIVSGNTE 314 (433)
T ss_dssp EECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTE-----------------------EE-EEEEEEECEEEEEECSST
T ss_pred EEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCc-----------------------EE-eeccCCCCcceEEECCCC
Confidence 9999 887888877 48899999998732 12 223455678889998 5
Q ss_pred C-EEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcC---------------CCc
Q 019117 251 D-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR---------------EGK 314 (346)
Q Consensus 251 ~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~---------------dg~ 314 (346)
+ ++++++.|+.|++||+.+++ .+..+. +...+.+++|+|++ ++|++++. ||.
T Consensus 315 ~~l~~~~~~~~~v~v~d~~~~~---------~~~~~~-~~~~~~~~~~s~dg--~~l~~~~~~~~~~~~~~~~~g~~dg~ 382 (433)
T 3bws_A 315 NKIYVSDMCCSKIEVYDLKEKK---------VQKSIP-VFDKPNTIALSPDG--KYLYVSCRGPNHPTEGYLKKGLVLGK 382 (433)
T ss_dssp TEEEEEETTTTEEEEEETTTTE---------EEEEEE-CSSSEEEEEECTTS--SEEEEEECCCCCTTTCTTSCCSSCCE
T ss_pred CEEEEEecCCCEEEEEECCCCc---------EEEEec-CCCCCCeEEEcCCC--CEEEEEecCCCccccccccccccceE
Confidence 4 55667889999999999765 344443 45678999999999 56666655 579
Q ss_pred EEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117 315 IFVWELQSSPPVLIARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 315 i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~ 346 (346)
|++||+.+++.+........+.+++|+|||++
T Consensus 383 v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~ 414 (433)
T 3bws_A 383 VYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRY 414 (433)
T ss_dssp EEEEETTTTEEEEEEECSSSEEEEEECTTSCE
T ss_pred EEEEECCCCcEEEEecCCCCCceEEEcCCCCE
Confidence 99999999887777666667899999999974
No 113
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-33 Score=255.12 Aligned_cols=260 Identities=13% Similarity=0.041 Sum_probs=192.0
Q ss_pred cccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCcee--eeEeeee----cCCCccceEEEEEEEcCCCCcEE
Q 019117 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI--AALQSYV----DEDKEESFYTVSWACNVDGIPFL 101 (346)
Q Consensus 29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~--~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~l 101 (346)
+.+|...+..++|+| ++++||+|+.|+ |++||+.++... ..+.... ...|...|.+++|+ |+|+ +|
T Consensus 431 l~G~~~~v~sv~~sp----dg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafs--pdg~-~L 503 (902)
T 2oaj_A 431 LKGGVRTKRQKLPAE----YGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFA--AETL-EL 503 (902)
T ss_dssp CCCSBCCCCCCCCCS----EEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEE--TTTT-EE
T ss_pred ccCCcCCCCcccccc----cCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEec--CCCC-eE
Confidence 455555555566666 789999999999 999999877432 1111100 01477789888887 9999 99
Q ss_pred EEeecCCeEEEEEccCcc---------------------------------------------eeeeeccCCCceEEEEE
Q 019117 102 VAGGINGIIRVIDVSNEK---------------------------------------------LHKSFVGHGDSINEIRT 136 (346)
Q Consensus 102 ~~~~~dg~i~iwd~~~~~---------------------------------------------~~~~~~~~~~~v~~~~~ 136 (346)
|+|+.||+|+|||+.+++ ++..+.+|.+.|++++|
T Consensus 504 Asgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svaf 583 (902)
T 2oaj_A 504 AVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINN 583 (902)
T ss_dssp EEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEE
T ss_pred EEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEe
Confidence 999999999999998662 36678889999999999
Q ss_pred eCCCCceEEEeeCCCCEEEEecCCCeeEE--EecccC-CCCcceEEEEec-----CCC---CcEEEEEecCCeEEEEEc-
Q 019117 137 QPLKPSLVVSASKDESVRLWNVQTGICIL--IFAGAG-GHRNEVLSVDFH-----PSD---IYRIASCGMDNTVKIWSM- 204 (346)
Q Consensus 137 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~-~~~~~v~~~~~~-----~~~---~~~l~s~~~d~~i~iwd~- 204 (346)
+| ++ +|++|+.|++|++||++++..+. .+.... +|...|++++|+ | + +.+|++|+.|++|++||+
T Consensus 584 Sp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~-Dg~~~~~l~sgs~D~tv~~wd~~ 660 (902)
T 2oaj_A 584 SN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGD-DGYSSILMVCGTDMGEVITYKIL 660 (902)
T ss_dssp CB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTT-SSSEEEEEEEEETTSEEEEEEEE
T ss_pred cC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCC-CCCcceEEEEEecCCcEEEEEEe
Confidence 99 78 99999999999999998877664 232332 799999999999 8 5 489999999999999999
Q ss_pred --cccceeeeeceeecCCCCCCCCccceeceEEEeec-----ccceEEEE-ec----------------------CC-EE
Q 019117 205 --KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH-----SNYVDCNR-WL----------------------GD-FI 253 (346)
Q Consensus 205 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~-~~----------------------~~-~l 253 (346)
.+++ ....+.+| ...|..+. |+ .+ ++
T Consensus 661 p~~~g~-----------------------~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 717 (902)
T 2oaj_A 661 PASGGK-----------------------FDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIV 717 (902)
T ss_dssp ECGGGC-----------------------EEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEE
T ss_pred cCCCCc-----------------------EEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEE
Confidence 3322 11222222 23344333 22 12 33
Q ss_pred EEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEE---E------EeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 254 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI---K------FSCDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 254 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~------~s~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
++++ +..||||++.+++ +.++.-.|...+.++ . |++++ ..|++++.||.|++|++.+.+
T Consensus 718 l~~~-~~~ir~~~~~~~k---------~~~k~~~~~~~~~~v~~~~~~~~~~~~~~~--~~l~~~~~~g~i~~~s~p~l~ 785 (902)
T 2oaj_A 718 LITG-FDDIRLITLGKSK---------STHKGFKYPLAATGLSYISTVEKNNDRKNL--TVIITLEINGHLRVFTIPDFK 785 (902)
T ss_dssp EEEC-SSEEEEECTTCCC---------EEEEECSSCEEEEEEEEEEEECSSSCEEEE--EEEEEEETTSEEEEEETTTCC
T ss_pred EEEe-ccceEEEeCcccc---------ceeeEcccceeeeEEEEEEeccccccccCc--eEEEEEeCCCcEEEEECcchH
Confidence 3333 7899999999876 454444455666665 5 67877 689999999999999999999
Q ss_pred cceeeeeee
Q 019117 325 PVLIARLIC 333 (346)
Q Consensus 325 ~~~~~~~~~ 333 (346)
.+....+..
T Consensus 786 ~~~~~~~~~ 794 (902)
T 2oaj_A 786 EQMSEHIPF 794 (902)
T ss_dssp EEEEEECSS
T ss_pred HHhhccCCc
Confidence 777666543
No 114
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=5.1e-32 Score=226.89 Aligned_cols=253 Identities=11% Similarity=0.077 Sum_probs=200.3
Q ss_pred eeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117 24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (346)
Q Consensus 24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 102 (346)
.....+.+|...|++++|+| ++++|++++.|+ |++||+.+++...... |...|.+++|.+++++. +|+
T Consensus 77 ~~~~~~~~h~~~v~~~~~~~----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~~-~l~ 145 (368)
T 3mmy_A 77 TIPKAQQMHTGPVLDVCWSD----DGSKVFTASCDKTAKMWDLSSNQAIQIAQ------HDAPVKTIHWIKAPNYS-CVM 145 (368)
T ss_dssp EEEEEEEECSSCEEEEEECT----TSSEEEEEETTSEEEEEETTTTEEEEEEE------CSSCEEEEEEEECSSCE-EEE
T ss_pred eeEEEeccccCCEEEEEECc----CCCEEEEEcCCCcEEEEEcCCCCceeecc------ccCceEEEEEEeCCCCC-EEE
Confidence 34466789999999999999 789999999998 9999998887655332 78899999997779998 999
Q ss_pred EeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEe
Q 019117 103 AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 182 (346)
Q Consensus 103 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 182 (346)
+++.||.|++||+.+++.+..+..+. .+.++.+.+ ..+++++.++.+.+|+++........... .+...+.++++
T Consensus 146 ~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 220 (368)
T 3mmy_A 146 TGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRRIES-PLKHQHRCVAI 220 (368)
T ss_dssp EEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEECCC-SCSSCEEEEEE
T ss_pred EccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC---CeeEEEeCCCcEEEEEeccccchhhhccc-cccCCCceEEE
Confidence 99999999999999999888888664 677777765 47888888999999999876543332211 23445556665
Q ss_pred cCCCC----cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc------------ceEEE
Q 019117 183 HPSDI----YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN------------YVDCN 246 (346)
Q Consensus 183 ~~~~~----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~i~~~ 246 (346)
.+ +. ..+++++.||.|++||++.... ......+..|.. .|.++
T Consensus 221 ~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 279 (368)
T 3mmy_A 221 FK-DKQNKPTGFALGSIEGRVAIHYINPPNP--------------------AKDNFTFKCHRSNGTNTSAPQDIYAVNGI 279 (368)
T ss_dssp EE-CTTSCEEEEEEEETTSEEEEEESSCSCH--------------------HHHSEEEECSEEC----CCCEEECCEEEE
T ss_pred cc-cCCCCCCeEEEecCCCcEEEEecCCCCc--------------------cccceeeeeeecccccccccccccceEEE
Confidence 54 33 3399999999999999987321 123344445544 79999
Q ss_pred Eec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 247 RWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 247 ~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
+|+ +++|++++.||.|++||+.+++ .+..+..|...|.+++|+|++ .+|++++.|+..+.|++.+.+
T Consensus 280 ~~sp~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~s~~g--~~l~~~s~d~~~~~~~~~~~~ 348 (368)
T 3mmy_A 280 AFHPVHGTLATVGSDGRFSFWDKDART---------KLKTSEQLDQPISACCFNHNG--NIFAYASSYDWSKGHEFYNPQ 348 (368)
T ss_dssp EECTTTCCEEEEETTSCEEEEETTTTE---------EEEECCCCSSCEEEEEECTTS--SCEEEEECCCSTTCGGGCCTT
T ss_pred EEecCCCEEEEEccCCeEEEEECCCCc---------EEEEecCCCCCceEEEECCCC--CeEEEEecccccccccccCCC
Confidence 998 7799999999999999999876 678888899999999999999 789999998876666655443
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.5e-33 Score=251.39 Aligned_cols=230 Identities=17% Similarity=0.189 Sum_probs=193.7
Q ss_pred CCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEcc--CcceeeeeccCCCceEEEEEeCCC--CceEEEeeCCCCEEEE
Q 019117 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS--NEKLHKSFVGHGDSINEIRTQPLK--PSLVVSASKDESVRLW 156 (346)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~iw 156 (346)
.|.+.|.+++|+ |+++ +|++|+.||.|++||+. +++.+..+.+|.+.|.+++|+| + +++|++|+.||.|++|
T Consensus 7 gH~~~V~~l~~s--~dg~-~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 7 AHNELIHDAVLD--YYGK-RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -CCCCEEEECCC--SSSC-CEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEEE
T ss_pred cCcceeEEEEEC--CCCC-eEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEEE
Confidence 478889888877 8898 99999999999999998 5567888999999999999998 5 8899999999999999
Q ss_pred ecCCCe--eEEEecccCCCCcceEEEEecCCC--CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceec
Q 019117 157 NVQTGI--CILIFAGAGGHRNEVLSVDFHPSD--IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP 232 (346)
Q Consensus 157 d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (346)
|+.+++ .+..+. +|...|++++|+| + +.++++++.||.|++||++... ...
T Consensus 83 d~~~~~~~~~~~~~---~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~---------------------~~~ 137 (753)
T 3jro_A 83 KEENGRWSQIAVHA---VHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENG---------------------TTS 137 (753)
T ss_dssp EEETTEEEEEEEEC---CCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCSSS---------------------CCC
T ss_pred ECCCCccccccccc---CCCCCeEEEEECC-CCCCCEEEEEeCCCcEEEEEeecCC---------------------Ccc
Confidence 999886 566665 7999999999999 6 8999999999999999998732 123
Q ss_pred eEEEeecccceEEEEecC---------------CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEE
Q 019117 233 VFIASVHSNYVDCNRWLG---------------DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF 297 (346)
Q Consensus 233 ~~~~~~~~~~i~~~~~~~---------------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 297 (346)
......|...|.++.|++ .++++++.||.|++||+++... .......+.+|...|.+++|
T Consensus 138 ~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~-----~~~~~~~~~~h~~~V~~l~~ 212 (753)
T 3jro_A 138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-----TYVLESTLEGHSDWVRDVAW 212 (753)
T ss_dssp CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT-----EEEEEEEECCCSSCEEEEEE
T ss_pred eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc-----cceeeeeecCCCCcEEEEEe
Confidence 445678999999999973 6899999999999999987642 12356677889999999999
Q ss_pred eec---CCcceEEEEcCCCcEEEEEcCCCCcc------eeeeeeeeEEEEEecCCCCC
Q 019117 298 SCD---FHYNAAAIGNREGKIFVWELQSSPPV------LIARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 298 s~~---~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~spdg~~ 346 (346)
+|+ + .+|++++.||.|++||+.+++.. ....+.+.+.+++|+|+|++
T Consensus 213 sp~~~~~--~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~ 268 (753)
T 3jro_A 213 SPTVLLR--SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV 268 (753)
T ss_dssp CCCCSSS--EEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCC
T ss_pred ccCCCCC--CEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCE
Confidence 999 6 79999999999999999987421 12234556889999999975
No 116
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-31 Score=229.14 Aligned_cols=270 Identities=13% Similarity=0.102 Sum_probs=196.9
Q ss_pred ccCCCceEEEEEEeecCCCccEE-EEEcCCc-EEEEEec--cCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVF-ATVGGNR-VTVYQCL--EGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~l-a~~~~~~-v~i~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 105 (346)
.+|.+.|++++|+| ++++| ++++.|+ |++|++. ++..+..+..+ .+...+.+++|+ |+++ +|++|+
T Consensus 99 ~~~~~~v~~~~~s~----d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~---~~~~~v~~~~~s--p~~~-~l~~~~ 168 (450)
T 2vdu_B 99 PPIYSYIRNLRLTS----DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF---CFSKRPNAISIA--EDDT-TVIIAD 168 (450)
T ss_dssp -CCCCCEEEEEECT----TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE---ECSSCEEEEEEC--TTSS-EEEEEE
T ss_pred CccCCceEEEEEcC----CCCEEEEEECCCCeEEEEECcCCCCceeeeeecc---cCCCCceEEEEc--CCCC-EEEEEe
Confidence 46778999999999 67885 8898887 9999998 77777776642 255677777776 9998 999999
Q ss_pred cCCeEEEEEccCcceee----eeccCCCceEEEEEeCCC---CceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceE
Q 019117 106 INGIIRVIDVSNEKLHK----SFVGHGDSINEIRTQPLK---PSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 178 (346)
Q Consensus 106 ~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 178 (346)
.+|.|++|++.+++... .+.+|...|.+++|+| + +.+|++++.|+.|++||+++++.+..+.. +|...|.
T Consensus 169 ~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~h~~~v~ 245 (450)
T 2vdu_B 169 KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQCFIVDKWLF--GHKHFVS 245 (450)
T ss_dssp TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESCTTCEEEECC--CCSSCEE
T ss_pred CCCcEEEEecCCcccccccceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCCceeeeeec--CCCCceE
Confidence 99999999998877554 7788999999999999 7 88999999999999999999988877322 6999999
Q ss_pred EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceee--cCCCCCCCCccceeceEEEeecccceEEEEec--CCEEE
Q 019117 179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTW--TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL 254 (346)
Q Consensus 179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~ 254 (346)
+++|+ ++.+|++++.|+.|++||+++.+......... .........................|.++.|+ +++++
T Consensus 246 ~~~~s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 323 (450)
T 2vdu_B 246 SICCG--KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVA 323 (450)
T ss_dssp EEEEC--STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEE
T ss_pred EEEEC--CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEE
Confidence 99999 78899999999999999999854322111000 00000000000000000111234568888888 78999
Q ss_pred EEe-ecCeEEEEcC--CCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcC------CCcEEEEEcCCC
Q 019117 255 SKS-VDNEIVLWEP--KMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR------EGKIFVWELQSS 323 (346)
Q Consensus 255 ~~~-~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~------dg~i~iwd~~~~ 323 (346)
+++ .|+.|++|++ .... ....+..+..+ ..|.+++|+|++ .++++++. +..|.+|.+...
T Consensus 324 ~~~~~d~~i~iw~~~~~~~~------~l~~~~~~~~~-~~v~~~~~~~~~--~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 324 FFVEATKCIIILEMSEKQKG------DLALKQIITFP-YNVISLSAHNDE--FQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp EEETTCSEEEEEEECSSSTT------CEEEEEEEECS-SCEEEEEEETTE--EEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred EEECCCCeEEEEEeccCCCC------ceeeccEeccC-CceEEEEecCCc--EEEEEecccCCCCCCcceEEEEEEcC
Confidence 988 8999999999 4331 12356666666 789999999964 34444443 556889887654
No 117
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.8e-31 Score=221.49 Aligned_cols=246 Identities=14% Similarity=0.133 Sum_probs=196.8
Q ss_pred eeecccCCCceEEEEEEeecCCCcc-EEEEEcCCc-EEEEEe-ccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEE
Q 019117 26 TNKLQEGKRPLYAVVFNFIDSRYFN-VFATVGGNR-VTVYQC-LEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (346)
Q Consensus 26 ~~~~~~h~~~v~~~~~~p~~~~~~~-~la~~~~~~-v~i~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 102 (346)
...+.+|...|.+++|+| ++. +|++++.++ |++|++ .++.. ..+.. ..|...|.+++|. | +. +|+
T Consensus 49 ~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~---~~~~~~v~~l~~~--~-~~-~l~ 116 (342)
T 1yfq_A 49 LLQSLRYKHPLLCCNFID----NTDLQIYVGTVQGEILKVDLIGSPSF-QALTN---NEANLGICRICKY--G-DD-KLI 116 (342)
T ss_dssp EEEEEECSSCEEEEEEEE----SSSEEEEEEETTSCEEEECSSSSSSE-EECBS---CCCCSCEEEEEEE--T-TT-EEE
T ss_pred ceeeeecCCceEEEEECC----CCCcEEEEEcCCCeEEEEEeccCCce-Eeccc---cCCCCceEEEEeC--C-CC-EEE
Confidence 344568999999999999 688 999999888 999998 76644 22221 1277889888887 7 66 999
Q ss_pred EeecCCeEEEEEccC---------cceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC-CeeE--EEeccc
Q 019117 103 AGGINGIIRVIDVSN---------EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT-GICI--LIFAGA 170 (346)
Q Consensus 103 ~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~--~~~~~~ 170 (346)
+++.|+.|++||+.+ ++.+..+. |...|.+++|+| +. +++++.|+.|++||+++ +... ....
T Consensus 117 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~-- 190 (342)
T 1yfq_A 117 AASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDDNGTIEES-- 190 (342)
T ss_dssp EEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTTCCCEEEEC--
T ss_pred EEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC-Cc--EEEEeCCCeEEEEECCccccccceeeec--
Confidence 999999999999988 77777777 889999999998 44 99999999999999987 5432 2222
Q ss_pred CCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc---------
Q 019117 171 GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN--------- 241 (346)
Q Consensus 171 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 241 (346)
.|...+.+++|+|.++.++++++.||.|++|+++.... .........+..|..
T Consensus 191 -~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~ 252 (342)
T 1yfq_A 191 -GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD-----------------DYNSSKRFAFRCHRLNLKDTNLAY 252 (342)
T ss_dssp -SCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC-----------------STTCTTCEEEECCCCCTTCCSSCC
T ss_pred -CCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCc-----------------ccccccceeeecccccccccccce
Confidence 58889999999973567899999999999999987300 000123445566654
Q ss_pred ceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCC-CcCeeEEEEeecCCcceEEEEcCCCc-EEE
Q 019117 242 YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP-ECDIWFIKFSCDFHYNAAAIGNREGK-IFV 317 (346)
Q Consensus 242 ~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~~l~~~~~dg~-i~i 317 (346)
.|.+++|+ +++|++++.||.|++||+.+++ .+..+..| ...|.+++ |++ .+|++++.||. .+.
T Consensus 253 ~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---------~~~~~~~~h~~~v~~~~--~~~--~~l~s~s~Dg~~~~~ 319 (342)
T 1yfq_A 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK---------KIKNFAKFNEDSVVKIA--CSD--NILCLATSDDTFKTN 319 (342)
T ss_dssp CEEEEEECTTTCCEEEEETTSCEEEEETTTTE---------EEEECCCCSSSEEEEEE--ECS--SEEEEEEECTHHHHC
T ss_pred eEEEEEEcCCCCEEEEecCCceEEEEcCccHh---------HhhhhhcccCCCceEec--CCC--CeEEEEecCCccccc
Confidence 89999998 7899999999999999999876 67778888 89999999 888 79999999998 655
Q ss_pred EEc
Q 019117 318 WEL 320 (346)
Q Consensus 318 wd~ 320 (346)
|..
T Consensus 320 ~~~ 322 (342)
T 1yfq_A 320 AAI 322 (342)
T ss_dssp SSS
T ss_pred ccc
Confidence 553
No 118
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=6.7e-30 Score=215.97 Aligned_cols=254 Identities=14% Similarity=0.062 Sum_probs=195.7
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEE-EEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVF-ATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~l-a~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (346)
.++...+.+|. .+.+++|+| +++++ ++++.++ |++||+.+++....+.. ...+.+++|+ |+++ +
T Consensus 22 ~~~~~~~~~~~-~~~~~~~s~----dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~------~~~v~~~~~s--pdg~-~ 87 (391)
T 1l0q_A 22 NKVTATIPVGS-NPMGAVISP----DGTKVYVANAHSNDVSIIDTATNNVIATVPA------GSSPQGVAVS--PDGK-Q 87 (391)
T ss_dssp TEEEEEEECSS-SEEEEEECT----TSSEEEEEEGGGTEEEEEETTTTEEEEEEEC------SSSEEEEEEC--TTSS-E
T ss_pred CeEEEEeecCC-CcceEEECC----CCCEEEEECCCCCeEEEEECCCCeEEEEEEC------CCCccceEEC--CCCC-E
Confidence 34555666665 489999999 67765 6776666 99999988887776652 3367777766 9998 5
Q ss_pred E-EEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceE-EEeeCCCCEEEEecCCCeeEEEecccCCCCcceE
Q 019117 101 L-VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV-VSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 178 (346)
Q Consensus 101 l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 178 (346)
| ++++.++.|++||+.+++.+..+..+ ..+.+++|+| +++.+ ++++.|+.|++||+.+++.+..+. ....+.
T Consensus 88 l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----~~~~~~ 161 (391)
T 1l0q_A 88 VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVS----VGRSPK 161 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE----CCSSEE
T ss_pred EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEe----cCCCcc
Confidence 5 55667799999999999988887754 5689999999 66655 788889999999999999988887 345679
Q ss_pred EEEecCCCCcEE-EEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEE
Q 019117 179 SVDFHPSDIYRI-ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS 255 (346)
Q Consensus 179 ~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~ 255 (346)
+++|+| ++..+ ++++.++.|++||+++.+ ....+ .+...+.+++|+ ++++++
T Consensus 162 ~~~~~~-dg~~l~~~~~~~~~v~~~d~~~~~-----------------------~~~~~-~~~~~~~~~~~~~~g~~l~~ 216 (391)
T 1l0q_A 162 GIAVTP-DGTKVYVANFDSMSISVIDTVTNS-----------------------VIDTV-KVEAAPSGIAVNPEGTKAYV 216 (391)
T ss_dssp EEEECT-TSSEEEEEETTTTEEEEEETTTTE-----------------------EEEEE-ECSSEEEEEEECTTSSEEEE
T ss_pred eEEECC-CCCEEEEEeCCCCEEEEEECCCCe-----------------------EEEEE-ecCCCccceEECCCCCEEEE
Confidence 999999 66555 677889999999998732 22222 355678889998 778888
Q ss_pred Ee---ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee
Q 019117 256 KS---VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI 332 (346)
Q Consensus 256 ~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 332 (346)
++ .++.|++||+.+++ .+..+..+. .+.+++|+|+++ .++++++.|+.|++||+.+++.+......
T Consensus 217 ~~~~~~~~~v~~~d~~~~~---------~~~~~~~~~-~~~~~~~s~dg~-~l~~s~~~d~~v~v~d~~~~~~~~~~~~~ 285 (391)
T 1l0q_A 217 TNVDKYFNTVSMIDTGTNK---------ITARIPVGP-DPAGIAVTPDGK-KVYVALSFXNTVSVIDTATNTITATMAVG 285 (391)
T ss_dssp EEECSSCCEEEEEETTTTE---------EEEEEECCS-SEEEEEECTTSS-EEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred EecCcCCCcEEEEECCCCe---------EEEEEecCC-CccEEEEccCCC-EEEEEcCCCCEEEEEECCCCcEEEEEECC
Confidence 87 68999999998775 455555544 578999999994 24478899999999999998766555433
No 119
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=4.5e-30 Score=217.07 Aligned_cols=246 Identities=11% Similarity=0.070 Sum_probs=193.2
Q ss_pred cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCC
Q 019117 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG 128 (346)
Q Consensus 50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 128 (346)
.++++++.++ |++||+.+++.+..+.. ...+.+++|+ |+++.++++++.|+.|++||+.+++.+..+..+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~------~~~~~~~~~s--~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~ 74 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPV------GSNPMGAVIS--PDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS 74 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEEC------SSSEEEEEEC--TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeec------CCCcceEEEC--CCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC
Confidence 5788888887 99999998887776653 2346666665 9998334777789999999999999988887655
Q ss_pred CceEEEEEeCCCCceE-EEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEE-EEEecCCeEEEEEccc
Q 019117 129 DSINEIRTQPLKPSLV-VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI-ASCGMDNTVKIWSMKE 206 (346)
Q Consensus 129 ~~v~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~ 206 (346)
.+.+++|+| +++.| ++++.++.|++||+.+++.+..+. +...+.+++|+| +++.+ ++++.++.|++||+.+
T Consensus 75 -~v~~~~~sp-dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~----~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~ 147 (391)
T 1l0q_A 75 -SPQGVAVSP-DGKQVYVTNMASSTLSVIDTTSNTVAGTVK----TGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVT 147 (391)
T ss_dssp -SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE----CSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTT
T ss_pred -CccceEECC-CCCEEEEEECCCCEEEEEECCCCeEEEEEe----CCCCcceEEECC-CCCEEEEEeCCCCEEEEEECCC
Confidence 899999999 66655 566678999999999999988887 456789999999 66655 7888899999999987
Q ss_pred cceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEE-EEEeecCeEEEEcCCCCCCCCCCccccccc
Q 019117 207 FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADILQ 283 (346)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 283 (346)
. ..+..+..+ ..+.++.|+ ++++ ++++.++.|++||+++++ .+.
T Consensus 148 ~-----------------------~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~---------~~~ 194 (391)
T 1l0q_A 148 K-----------------------AVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS---------VID 194 (391)
T ss_dssp T-----------------------EEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE---------EEE
T ss_pred C-----------------------cEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe---------EEE
Confidence 3 233344433 456888888 6666 677889999999998875 333
Q ss_pred cccCCCcCeeEEEEeecCCcceEEEEc---CCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117 284 KYPVPECDIWFIKFSCDFHYNAAAIGN---REGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 284 ~~~~~~~~v~~~~~s~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~ 346 (346)
.+. +...+.+++|+|++ .+|++++ .++.|++||+.+++.+........+.+++|+|||++
T Consensus 195 ~~~-~~~~~~~~~~~~~g--~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~ 257 (391)
T 1l0q_A 195 TVK-VEAAPSGIAVNPEG--TKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKK 257 (391)
T ss_dssp EEE-CSSEEEEEEECTTS--SEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSE
T ss_pred EEe-cCCCccceEECCCC--CEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCE
Confidence 333 34578999999999 5677766 689999999999887766666666889999999973
No 120
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.2e-31 Score=220.96 Aligned_cols=210 Identities=10% Similarity=0.059 Sum_probs=164.6
Q ss_pred EcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecC---------CCee
Q 019117 93 CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ---------TGIC 163 (346)
Q Consensus 93 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~---------~~~~ 163 (346)
+.+++. +|++|+.||.|++||+.+++.+..+. ...|.++.|+| . +++++.|++|++|+.. +++.
T Consensus 44 ~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~-~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~ 116 (343)
T 3lrv_A 44 MYYDKW-VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHP-A---IISRGPCNRLLLLYPGNQITILDSKTNKV 116 (343)
T ss_dssp SSEEEE-EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCC-S---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred hcCCCC-EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCC-c---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence 335666 99999999999999999999888776 56788899998 4 9999999999999765 4444
Q ss_pred EEEecccCCCCcceEEEEecC-CCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE-eeccc
Q 019117 164 ILIFAGAGGHRNEVLSVDFHP-SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SVHSN 241 (346)
Q Consensus 164 ~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 241 (346)
+..+.. +|...|.+++|+| .++.++++++.||.|++||++..+ ..... ..|..
T Consensus 117 ~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-----------------------~~~~~~~~~~~ 171 (343)
T 3lrv_A 117 LREIEV--DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-----------------------QYIVHSAKSDV 171 (343)
T ss_dssp EEEEEC--CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC-----------------------EEEEECCCSSC
T ss_pred eEEeec--CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-----------------------EEEEEecCCCC
Confidence 444432 5778999999997 256789999999999999998732 22222 23555
Q ss_pred ceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCcccccc-ccccC-CCcCeeEEEEeecCCcceEEEEcCCCcEEE
Q 019117 242 YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADIL-QKYPV-PECDIWFIKFSCDFHYNAAAIGNREGKIFV 317 (346)
Q Consensus 242 ~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~-~~~~v~~~~~s~~~~~~~l~~~~~dg~i~i 317 (346)
.+.+++|+ +.+|++|+.|+.|++||+++++ .+ ..+.. |...|.+++|+|++ .+|++++ |+.|++
T Consensus 172 ~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~---------~~~~~~~~~h~~~v~~l~fs~~g--~~l~s~~-~~~v~i 239 (343)
T 3lrv_A 172 EYSSGVLHKDSLLLALYSPDGILDVYNLSSPD---------QASSRFPVDEEAKIKEVKFADNG--YWMVVEC-DQTVVC 239 (343)
T ss_dssp CCCEEEECTTSCEEEEECTTSCEEEEESSCTT---------SCCEECCCCTTSCEEEEEECTTS--SEEEEEE-SSBEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCCC---------CCccEEeccCCCCEEEEEEeCCC--CEEEEEe-CCeEEE
Confidence 79999998 8899999999999999999876 33 56666 88999999999999 7899999 559999
Q ss_pred EEcCCCCcceeeee----eeeE--EEEEecCCCCC
Q 019117 318 WELQSSPPVLIARL----ICFS--LHVKYNPQSVY 346 (346)
Q Consensus 318 wd~~~~~~~~~~~~----~~~~--~~~~~spdg~~ 346 (346)
||+++++....... ...+ .+++|+|+|+|
T Consensus 240 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 274 (343)
T 3lrv_A 240 FDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN 274 (343)
T ss_dssp EETTSSTTCBSSCCCBC-----CCEEEEECTTSSE
T ss_pred EEcCCCCcceeecccccccccccceEEEECCCCCE
Confidence 99999876543221 1122 36999999975
No 121
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.98 E-value=1.8e-30 Score=216.92 Aligned_cols=197 Identities=12% Similarity=0.048 Sum_probs=160.6
Q ss_pred CCCceEEEEEEeecCCCccEEEEEc--CCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117 32 GKRPLYAVVFNFIDSRYFNVFATVG--GNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (346)
Q Consensus 32 h~~~v~~~~~~p~~~~~~~~la~~~--~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 108 (346)
+...+.+++||| +|+++|+++ .|+ |+|||..+++.+..+. +...|.+++|+ |+|+ +|++++.+
T Consensus 132 ~~~~~~~v~fSp----Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~------~~~~V~~v~fs--pdg~-~l~s~s~~- 197 (365)
T 4h5i_A 132 ADDYTKLVYISR----EGTVAAIASSKVPAIMRIIDPSDLTEKFEIE------TRGEVKDLHFS--TDGK-VVAYITGS- 197 (365)
T ss_dssp TTCCEEEEEECT----TSSCEEEEESCSSCEEEEEETTTTEEEEEEE------CSSCCCEEEEC--TTSS-EEEEECSS-
T ss_pred cccCEEEEEEcC----CCCEEEEEECCCCCEEEEeECCCCcEEEEeC------CCCceEEEEEc--cCCc-eEEeccce-
Confidence 455689999999 788876544 566 9999999888776664 55678877776 9999 99998855
Q ss_pred eEEEEEccCcceee--eeccCCCceEEEEEeCCCCceEEEeeCCC----CEEEEecCCCee----EEEecccCCCCcceE
Q 019117 109 IIRVIDVSNEKLHK--SFVGHGDSINEIRTQPLKPSLVVSASKDE----SVRLWNVQTGIC----ILIFAGAGGHRNEVL 178 (346)
Q Consensus 109 ~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~----~~~~~~~~~~~~~v~ 178 (346)
.+.+|+..+++.+. ....|...|.+++|+| ++..+++++.|+ .+++|++..... ...+. +|...|+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~V~ 273 (365)
T 4h5i_A 198 SLEVISTVTGSCIARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVT---NRFKGIT 273 (365)
T ss_dssp CEEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEE---SSCSCEE
T ss_pred eEEEEEeccCcceeeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceecceeeeeec---CCCCCeE
Confidence 56777777776543 3456889999999999 889999998887 588899876653 23344 7899999
Q ss_pred EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEE-EeecccceEEEEec--CCEEEE
Q 019117 179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI-ASVHSNYVDCNRWL--GDFILS 255 (346)
Q Consensus 179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~--~~~l~~ 255 (346)
+++|+| ++++|++|+.|++|++||+++ ..++.. +.+|...|++++|+ +++|++
T Consensus 274 ~~~~Sp-dg~~lasgs~D~~V~iwd~~~-----------------------~~~~~~~~~gH~~~V~~v~fSpdg~~laS 329 (365)
T 4h5i_A 274 SMDVDM-KGELAVLASNDNSIALVKLKD-----------------------LSMSKIFKQAHSFAITEVTISPDSTYVAS 329 (365)
T ss_dssp EEEECT-TSCEEEEEETTSCEEEEETTT-----------------------TEEEEEETTSSSSCEEEEEECTTSCEEEE
T ss_pred eEEECC-CCCceEEEcCCCEEEEEECCC-----------------------CcEEEEecCcccCCEEEEEECCCCCEEEE
Confidence 999999 999999999999999999998 334555 46899999999999 889999
Q ss_pred EeecCeEEEEcCCCC
Q 019117 256 KSVDNEIVLWEPKMK 270 (346)
Q Consensus 256 ~~~d~~i~iwd~~~~ 270 (346)
++.|++|+|||+...
T Consensus 330 ~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 330 VSAANTIHIIKLPLN 344 (365)
T ss_dssp EETTSEEEEEECCTT
T ss_pred EeCCCeEEEEEcCCC
Confidence 999999999999654
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=6.8e-29 Score=212.67 Aligned_cols=240 Identities=8% Similarity=-0.035 Sum_probs=192.9
Q ss_pred ecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEE-EEee
Q 019117 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL-VAGG 105 (346)
Q Consensus 28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l-~~~~ 105 (346)
.+.+|...|.+++|+| ++.++++++.++ |++||+.+++....+.. +...+.+++|. |+++ ++ ++++
T Consensus 164 ~~~~~~~~v~~~~~~~----~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~-~l~~~~~ 231 (433)
T 3bws_A 164 KYKKKLGFVETISIPE----HNELWVSQMQANAVHVFDLKTLAYKATVDL-----TGKWSKILLYD--PIRD-LVYCSNW 231 (433)
T ss_dssp HHHTTCCEEEEEEEGG----GTEEEEEEGGGTEEEEEETTTCCEEEEEEC-----SSSSEEEEEEE--TTTT-EEEEEET
T ss_pred cccccCCceeEEEEcC----CCEEEEEECCCCEEEEEECCCceEEEEEcC-----CCCCeeEEEEc--CCCC-EEEEEec
Confidence 4568999999999988 788999999877 99999988887766653 56677777776 8898 55 5666
Q ss_pred cCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEee--------CCCCEEEEecCCCeeEEEecccCCCCcce
Q 019117 106 INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS--------KDESVRLWNVQTGICILIFAGAGGHRNEV 177 (346)
Q Consensus 106 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v 177 (346)
.++.|++||+.+++.+..+..+ ..+.+++|+| ++..+++++ .|+.|++||+++++.+..+. +...+
T Consensus 232 ~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~----~~~~~ 305 (433)
T 3bws_A 232 ISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG----PPGNK 305 (433)
T ss_dssp TTTEEEEEETTTTEEEEECCCC-SEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE----EEECE
T ss_pred CCCcEEEEECCCCcEEEEecCC-CCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc----CCCCc
Confidence 8999999999999888887754 4589999999 788888877 58899999999998887775 67789
Q ss_pred EEEEecCCCC-cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEE
Q 019117 178 LSVDFHPSDI-YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL 254 (346)
Q Consensus 178 ~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~ 254 (346)
.+++|+| ++ .++++++.|+.|++||+.+. .....+ .+...+.+++|+ +++++
T Consensus 306 ~~~~~~~-~g~~l~~~~~~~~~v~v~d~~~~-----------------------~~~~~~-~~~~~~~~~~~s~dg~~l~ 360 (433)
T 3bws_A 306 RHIVSGN-TENKIYVSDMCCSKIEVYDLKEK-----------------------KVQKSI-PVFDKPNTIALSPDGKYLY 360 (433)
T ss_dssp EEEEECS-STTEEEEEETTTTEEEEEETTTT-----------------------EEEEEE-ECSSSEEEEEECTTSSEEE
T ss_pred ceEEECC-CCCEEEEEecCCCEEEEEECCCC-----------------------cEEEEe-cCCCCCCeEEEcCCCCEEE
Confidence 9999999 55 56677799999999999872 223333 366778899998 77888
Q ss_pred EEee---------------cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc-CCCcEEEE
Q 019117 255 SKSV---------------DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-REGKIFVW 318 (346)
Q Consensus 255 ~~~~---------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~iw 318 (346)
+++. ||.|++||+.+++ .+..+.. ...+.+++|+|++ ++|++++ .|+.|++|
T Consensus 361 ~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~---------~~~~~~~-~~~~~~~~~s~dg--~~l~~~~~~d~~i~v~ 428 (433)
T 3bws_A 361 VSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT---------VKEFWEA-GNQPTGLDVSPDN--RYLVISDFLDHQIRVY 428 (433)
T ss_dssp EEECCCCCTTTCTTSCCSSCCEEEEEETTTTE---------EEEEEEC-SSSEEEEEECTTS--CEEEEEETTTTEEEEE
T ss_pred EEecCCCccccccccccccceEEEEEECCCCc---------EEEEecC-CCCCceEEEcCCC--CEEEEEECCCCeEEEE
Confidence 8776 5799999998876 4444544 3478999999999 5676665 59999999
Q ss_pred EcCC
Q 019117 319 ELQS 322 (346)
Q Consensus 319 d~~~ 322 (346)
++..
T Consensus 429 ~~~~ 432 (433)
T 3bws_A 429 RRDG 432 (433)
T ss_dssp EETT
T ss_pred EecC
Confidence 9864
No 123
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=5.8e-29 Score=204.22 Aligned_cols=226 Identities=16% Similarity=0.221 Sum_probs=176.3
Q ss_pred EEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeec--cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeE
Q 019117 87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI 164 (346)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 164 (346)
.+++|+ +++ +|++|. |++|+|||+.+++.++.+. +|...|.+++|+| ++++|++|+.||+|++||+++++.+
T Consensus 29 ~~l~WS--~~~--~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 29 NLVDWS--SGN--VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp BCEEEC--TTS--EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE
T ss_pred eEEEEC--CCC--EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECC-CCCEEEEEECCCcEEEeecCCceeE
Confidence 347776 664 677765 9999999999999877664 6788899999999 8999999999999999999999999
Q ss_pred EEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE
Q 019117 165 LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD 244 (346)
Q Consensus 165 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (346)
..+. +|...+.++.+. +..+++++.++.+++|+.... ...+..+..|...+.
T Consensus 103 ~~~~---~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~ 154 (318)
T 4ggc_A 103 RNMT---SHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVA----------------------EHHVATLSGHSQEVC 154 (318)
T ss_dssp EEEE---CCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSS----------------------SCEEEEEECCSSCEE
T ss_pred EEec---CccceEEEeecC---CCEEEEEecCCceEeeecCCC----------------------ceeEEEEcCccCceE
Confidence 9998 799888877764 468999999999999998872 234567788999999
Q ss_pred EEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCc------------------ccc---------------------ccc
Q 019117 245 CNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEG------------------TAD---------------------ILQ 283 (346)
Q Consensus 245 ~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~------------------~~~---------------------~~~ 283 (346)
.+.+. ++++++++.|++|++||+++++...... ... ...
T Consensus 155 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~ 234 (318)
T 4ggc_A 155 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 234 (318)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE
T ss_pred EEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc
Confidence 99998 8899999999999999998765311100 000 000
Q ss_pred cccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee-eeeeEEEEEecCCCCC
Q 019117 284 KYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR-LICFSLHVKYNPQSVY 346 (346)
Q Consensus 284 ~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~spdg~~ 346 (346)
....+...+..+.|+|++...++++|+.|+.|++||+.+++++..+. +.+.+++++|+|||++
T Consensus 235 ~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~ 298 (318)
T 4ggc_A 235 SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT 298 (318)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSC
T ss_pred ccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence 11123456788899998853233345689999999999998766554 4566999999999975
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=3.2e-29 Score=200.24 Aligned_cols=215 Identities=15% Similarity=0.091 Sum_probs=151.4
Q ss_pred ccceeeeeecccCCCc-------------------------eEEEEEEeecCCCccEEEEEcC-----------------
Q 019117 20 KREYRVTNKLQEGKRP-------------------------LYAVVFNFIDSRYFNVFATVGG----------------- 57 (346)
Q Consensus 20 ~~~~~~~~~~~~h~~~-------------------------v~~~~~~p~~~~~~~~la~~~~----------------- 57 (346)
..++++.+++..|..+ |++|+|+|++..-+..+++++.
T Consensus 73 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~ 152 (356)
T 2w18_A 73 AWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSG 152 (356)
T ss_dssp SSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEES
T ss_pred CccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecc
Confidence 3566777777777654 4555566632222666666542
Q ss_pred ---Cc-EEEEEecc-CceeeeEeeeecCCCccceEEEEEEEcC-CCCcEEEEeecCCeEEEEEccCcceeeeeccCC---
Q 019117 58 ---NR-VTVYQCLE-GGVIAALQSYVDEDKEESFYTVSWACNV-DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG--- 128 (346)
Q Consensus 58 ---~~-v~i~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--- 128 (346)
++ |++|++.. ++.+..+.. |...+..++|++.+ ++. +|++++.|++|+|||+++++.++++.+|.
T Consensus 153 ~g~d~~V~~~~~s~dG~~~~s~~~-----~~~~v~~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v 226 (356)
T 2w18_A 153 TLSDQQVEVMTFAEDGGGKENQFL-----MPPEETILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQ 226 (356)
T ss_dssp SSTTCEEEEEEECTTSCEEEEEEE-----CCCSSCEEEEEEEETSTT-EEEEEETTSEEEEEETTTCCEEEEEECCC---
T ss_pred cCCCCcEEEEEECCCCceeeeecc-----CCCceeeEEeeccCCCCc-eEEEecCCCcEEEEECCCCcEEEEEcCCCcce
Confidence 33 77777743 444444443 55566677777533 455 99999999999999999999999998654
Q ss_pred CceEEEEEeCCCCceE------------EEeeCCCCEEEEecCCCeeEEEecc--cCCCCcceEEEEecCCCCcEEEEEe
Q 019117 129 DSINEIRTQPLKPSLV------------VSASKDESVRLWNVQTGICILIFAG--AGGHRNEVLSVDFHPSDIYRIASCG 194 (346)
Q Consensus 129 ~~v~~~~~~~~~~~~l------------~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~ 194 (346)
..+.+++|+| ++.++ ++|+.|++|++||..+++.+..+.. ..+|...+.+..+ ++.++++++
T Consensus 227 ~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS 302 (356)
T 2w18_A 227 ASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAIL 302 (356)
T ss_dssp CCCEEEEEEE-TTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEE
T ss_pred eeeEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEc
Confidence 4677889999 77765 6788999999999999988776521 1256655544444 367899999
Q ss_pred cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE-EEEec--CCEEEEEeecCeEEEEcC
Q 019117 195 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD-CNRWL--GDFILSKSVDNEIVLWEP 267 (346)
Q Consensus 195 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~--~~~l~~~~~d~~i~iwd~ 267 (346)
.|++|++||+.+ +..+.++.+|...+. +++|+ |++|++|+.|++|+|||+
T Consensus 303 ~DgTIkIWDl~t-----------------------Gk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 303 TSGTIAIWDLLL-----------------------GQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTSCEEEEETTT-----------------------CSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCcEEEEECCC-----------------------CcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 999999999998 456777888887655 58998 789999999999999985
No 125
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=3.1e-28 Score=202.74 Aligned_cols=241 Identities=13% Similarity=0.106 Sum_probs=177.8
Q ss_pred ceEEEEEEeecCCCccEE-EEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117 35 PLYAVVFNFIDSRYFNVF-ATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (346)
Q Consensus 35 ~v~~~~~~p~~~~~~~~l-a~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 112 (346)
.+..+++.+ +++.+ ++++.++ |++||..+++.+..+. +...|.++++. ++ .++++. ++.|++
T Consensus 60 ~~~~~~~~~----~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~------~~~~v~~v~~~--~~---~~~~~~-~~~i~i 123 (355)
T 3vu4_A 60 HLSKVRMLH----RTNYVAFVTGVKEVVHIWDDVKKQDVSRIK------VDAPVKDLFLS--RE---FIVVSY-GDVISV 123 (355)
T ss_dssp CCCEEEECT----TSSEEEEECSSTTEEEEEETTTTEEEEEEE------CSSCEEEEEEC--SS---EEEEEE-TTEEEE
T ss_pred CeEEEEEcC----CCCEEEEEECCccEEEEEECCCCcEEEEEE------CCCceEEEEEc--CC---EEEEEE-cCEEEE
Confidence 577888887 44555 4566655 9999999988877665 44577777664 54 444443 789999
Q ss_pred EEccCc-ceeeeeccCCCceEEEEEeCCCCceEEE--eeCCCCEEEEecCCCe----------------eEEEecccCCC
Q 019117 113 IDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVS--ASKDESVRLWNVQTGI----------------CILIFAGAGGH 173 (346)
Q Consensus 113 wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s--~~~d~~i~iwd~~~~~----------------~~~~~~~~~~~ 173 (346)
||+.++ +.+..+.. +...+++++ ..++. |+.||.|++||+++++ .+..+. +|
T Consensus 124 ~d~~~~~~~~~~~~~---~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~---~h 194 (355)
T 3vu4_A 124 FKFGNPWKRITDDIR---FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK---AH 194 (355)
T ss_dssp EESSTTCCBSSCCEE---EEEEEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEEC---CC
T ss_pred EECCCCceeeEEecc---CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE---cc
Confidence 999988 66666664 445566766 45554 6899999999999765 155666 79
Q ss_pred CcceEEEEecCCCCcEEEEEecCCe-EEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe-e-cccceEEEEec-
Q 019117 174 RNEVLSVDFHPSDIYRIASCGMDNT-VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS-V-HSNYVDCNRWL- 249 (346)
Q Consensus 174 ~~~v~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~i~~~~~~- 249 (346)
...|++++|+| ++.+|++++.|++ |++||+++ ...+..+. + |...|.+++|+
T Consensus 195 ~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~-----------------------~~~~~~~~~g~h~~~v~~~~~s~ 250 (355)
T 3vu4_A 195 TNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTED-----------------------GVLVREFRRGLDRADVVDMKWST 250 (355)
T ss_dssp SSCEEEEEECT-TSSEEEEEETTCSEEEEEETTT-----------------------CCEEEEEECTTCCSCEEEEEECT
T ss_pred CCceEEEEECC-CCCEEEEEeCCCCEEEEEECCC-----------------------CcEEEEEEcCCCCCcEEEEEECC
Confidence 99999999999 9999999999998 99999998 34556666 4 99999999998
Q ss_pred -CCEEEEEeecCeEEEEcCCCCCCCCCCcccc-c----------ccc--c-cCCCcCeeEEEEeecCCcceEEEEcCCCc
Q 019117 250 -GDFILSKSVDNEIVLWEPKMKEQSPGEGTAD-I----------LQK--Y-PVPECDIWFIKFSCDFHYNAAAIGNREGK 314 (346)
Q Consensus 250 -~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~----------~~~--~-~~~~~~v~~~~~s~~~~~~~l~~~~~dg~ 314 (346)
+++|++++.|++|++||+............. . ... + .........++|++|+ .+|++++.||.
T Consensus 251 ~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~--~~l~~~~~dg~ 328 (355)
T 3vu4_A 251 DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISES--SLVVVWPHTRM 328 (355)
T ss_dssp TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSS--EEEEEETTTTE
T ss_pred CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCC--CEEEEEeCCCe
Confidence 7899999999999999998764221110000 0 000 0 1112234678999999 78999999999
Q ss_pred EEEEEcCCCCcc
Q 019117 315 IFVWELQSSPPV 326 (346)
Q Consensus 315 i~iwd~~~~~~~ 326 (346)
+++|++..++..
T Consensus 329 ~~~~~~~~~~~~ 340 (355)
T 3vu4_A 329 IETFKVVFDDEM 340 (355)
T ss_dssp EEEEEEEEETTT
T ss_pred EEEEEEEcCCCC
Confidence 999999876543
No 126
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.9e-29 Score=214.34 Aligned_cols=235 Identities=13% Similarity=0.096 Sum_probs=173.9
Q ss_pred cCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCe
Q 019117 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI 109 (346)
Q Consensus 31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 109 (346)
+|...|.+++||| +|.+||+++.++ |++|+... .+..+. +........+.+++|+ |+|+ +|++|+.||+
T Consensus 83 ~~~~~V~~vawSP----dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafS--PDG~-~LAsgs~DGt 152 (588)
T 2j04_A 83 QPVCYPRVCKPSP----IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWN--PIES-SIVVGNEDGE 152 (588)
T ss_dssp SCSCCEEEEEECS----SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEEC--SSSS-CEEEEETTSE
T ss_pred CCCCcEEEEEECC----CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEc--CCCC-EEEEEcCCCE
Confidence 5688899999999 889999999999 99999433 333332 2111123458777765 9999 9999999999
Q ss_pred EEEEEccCcce-------eeee----ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee---EEEecccCCCCc
Q 019117 110 IRVIDVSNEKL-------HKSF----VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC---ILIFAGAGGHRN 175 (346)
Q Consensus 110 i~iwd~~~~~~-------~~~~----~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~ 175 (346)
|++||+.++.. +.++ .+|...|.+++|+| ++ +++++.|++|++||+..++. ..++.. +|..
T Consensus 153 VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~--~h~~ 227 (588)
T 2j04_A 153 LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSHQPVSRMIQN--ASRR 227 (588)
T ss_dssp EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSSCCCEEEEEC--CCSS
T ss_pred EEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCccccceeeecc--cccC
Confidence 99999998753 5665 67888999999999 66 88889999999999987773 234522 5889
Q ss_pred ceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEe--c--CC
Q 019117 176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW--L--GD 251 (346)
Q Consensus 176 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~--~~ 251 (346)
.|.+++|+ + ..+++++ +++|++||+... .......+|...|..+.| + +.
T Consensus 228 ~V~svaFs--g-~~LASa~-~~tIkLWd~~~~-----------------------~~~~~~~gh~~~V~~va~~~s~d~~ 280 (588)
T 2j04_A 228 KITDLKIV--D-YKVVLTC-PGYVHKIDLKNY-----------------------SISSLKTGSLENFHIIPLNHEKEST 280 (588)
T ss_dssp CCCCEEEE--T-TEEEEEC-SSEEEEEETTTT-----------------------EEEEEECSCCSCCCEEEETTCSSCE
T ss_pred cEEEEEEE--C-CEEEEEe-CCeEEEEECCCC-----------------------eEEEEEcCCCceEEEEEeeeCCCCC
Confidence 99999998 3 6788887 699999999872 221222279999999999 7 56
Q ss_pred EEEEEeecCeEEEEcCCCCCCCCC--------------CccccccccccCCCcCeeEEEEeecCCcceEEEEcC
Q 019117 252 FILSKSVDNEIVLWEPKMKEQSPG--------------EGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR 311 (346)
Q Consensus 252 ~l~~~~~d~~i~iwd~~~~~~~~~--------------~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~ 311 (346)
.+++++.||+ ++|..+.-...+. ......+..+.+ ...|.+++||||| ..+|+++.
T Consensus 281 ~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG--~~lA~~~~ 350 (588)
T 2j04_A 281 ILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDG--YSIAIVYD 350 (588)
T ss_dssp EEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTS--SEEEEEEE
T ss_pred EEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCCC--CEEEEEEe
Confidence 8999999999 9999753211000 000111223333 4569999999999 67887763
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=4.4e-27 Score=205.54 Aligned_cols=279 Identities=11% Similarity=0.070 Sum_probs=203.0
Q ss_pred ceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEe--ccCceeeeEeeeecCCCccceEEEEEEEcC---
Q 019117 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQC--LEGGVIAALQSYVDEDKEESFYTVSWACNV--- 95 (346)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--- 95 (346)
..++..++..+.. +..++|+| ++++|++++.++ |.+||+ .+++.+..+. ....+..++| +|
T Consensus 168 t~~~~~~i~~g~~-~~~v~~sp----dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~------~g~~p~~va~--sp~~~ 234 (543)
T 1nir_A 168 SKKIVKVIDTGYA-VHISRMSA----SGRYLLVIGRDARIDMIDLWAKEPTKVAEIK------IGIEARSVES--SKFKG 234 (543)
T ss_dssp TCCEEEEEECSTT-EEEEEECT----TSCEEEEEETTSEEEEEETTSSSCEEEEEEE------CCSEEEEEEE--CCSTT
T ss_pred CceEEEEEecCcc-cceEEECC----CCCEEEEECCCCeEEEEECcCCCCcEEEEEe------cCCCcceEEe--CCCcC
Confidence 3445566653333 88999999 789999988877 999999 6776666554 2344555555 58
Q ss_pred -CCCcEEEEee-cCCeEEEEEccCcceeeeeccC----------CC-ceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe
Q 019117 96 -DGIPFLVAGG-INGIIRVIDVSNEKLHKSFVGH----------GD-SINEIRTQPLKPSLVVSASKDESVRLWNVQTGI 162 (346)
Q Consensus 96 -~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~----------~~-~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 162 (346)
+|+ +|++++ .+++|.+||..+++++..+..+ .. .+..+.++|++..++++...++.|.+||+.+.+
T Consensus 235 ~dg~-~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~ 313 (543)
T 1nir_A 235 YEDR-YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID 313 (543)
T ss_dssp CTTT-EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS
T ss_pred CCCC-EEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC
Confidence 999 888877 4899999999999988877642 22 788999999666778888899999999998876
Q ss_pred eEE--EecccCCCCcceEEEEecCCCCcEEE-EEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee-
Q 019117 163 CIL--IFAGAGGHRNEVLSVDFHPSDIYRIA-SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV- 238 (346)
Q Consensus 163 ~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 238 (346)
.+. .+. +...+.+++|+| ++++++ ++..+++|.+||+.+.+ .+..+..
T Consensus 314 ~l~~~~i~----~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg~-----------------------l~~~i~~g 365 (543)
T 1nir_A 314 NLTVTSIG----AAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDRR-----------------------LSALVDVG 365 (543)
T ss_dssp SCEEEEEE----CCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTTE-----------------------EEEEEECS
T ss_pred cceeEEec----cCcCccCceECC-CCCEEEEEecCCCeEEEEECCCCe-----------------------EEEeeccC
Confidence 544 343 566788999999 777655 45568999999999843 2222322
Q ss_pred ---cccceEEEEec--CCEEEEEe-ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc--
Q 019117 239 ---HSNYVDCNRWL--GDFILSKS-VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-- 310 (346)
Q Consensus 239 ---~~~~i~~~~~~--~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~-- 310 (346)
|......+... +..++++. .|++|.+||+.+.... ....+.++++..|...+..++|+|++ ++|++++
T Consensus 366 ~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~--~~~~~~v~~l~~~g~~~~~v~~~pdg--~~l~v~~~~ 441 (543)
T 1nir_A 366 KTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHP--QYAWKKVAELQGQGGGSLFIKTHPKS--SHLYVDTTF 441 (543)
T ss_dssp SSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCT--TTBTSEEEEEECSCSCCCCEECCTTC--CEEEECCTT
T ss_pred CCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCc--hhcCeEEEEEEcCCCCceEEEcCCCC--CcEEEecCC
Confidence 54433333221 44566665 5899999999873210 01134788888888888999999999 6888876
Q ss_pred -----CCCcEEEEEcCCCCcc-eeeee---------eeeEEEEEecCCCCC
Q 019117 311 -----REGKIFVWELQSSPPV-LIARL---------ICFSLHVKYNPQSVY 346 (346)
Q Consensus 311 -----~dg~i~iwd~~~~~~~-~~~~~---------~~~~~~~~~spdg~~ 346 (346)
.++.|.+||+.+++.. ..+.+ ...+.+++|+|||++
T Consensus 442 ~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~ 492 (543)
T 1nir_A 442 NPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDE 492 (543)
T ss_dssp CSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSE
T ss_pred CCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCE
Confidence 2779999999998866 33321 356889999999974
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=3.6e-27 Score=200.18 Aligned_cols=267 Identities=12% Similarity=0.023 Sum_probs=195.6
Q ss_pred eecccCCCceEEEEEEeec----------CCCccEEEEEcCC------c-EEEEEeccCceeeeEeeeecCCCccceEEE
Q 019117 27 NKLQEGKRPLYAVVFNFID----------SRYFNVFATVGGN------R-VTVYQCLEGGVIAALQSYVDEDKEESFYTV 89 (346)
Q Consensus 27 ~~~~~h~~~v~~~~~~p~~----------~~~~~~la~~~~~------~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~ 89 (346)
..+.+|...+..+++++.+ ...+..++.++.+ + |++||.. +.....+.. +...+.++
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~-----~~~~v~~~ 184 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHR-----SPQPLMSP 184 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEE-----ESSCEEEE
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeC-----CCCcceee
Confidence 4567888878777776410 0014555555442 4 9999986 444455543 45667777
Q ss_pred EEEEcCCCCcEEEEeecCC---eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEE-EeeCCCC--EEEEecCCCee
Q 019117 90 SWACNVDGIPFLVAGGING---IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVV-SASKDES--VRLWNVQTGIC 163 (346)
Q Consensus 90 ~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~--i~iwd~~~~~~ 163 (346)
+|+ |+|+ +|++++.++ .|++||+.+++.. .+..|...+.+++|+| +++.|+ +++.++. |++||+.+++.
T Consensus 185 ~~S--pdg~-~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~ 259 (415)
T 2hqs_A 185 AWS--PDGS-KLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQI 259 (415)
T ss_dssp EEC--TTSS-EEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCE
T ss_pred EEc--CCCC-EEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCE
Confidence 776 9999 999998775 9999999988765 4666888999999999 777666 7776665 99999988776
Q ss_pred EEEecccCCCCcceEEEEecCCCCcEEEEEec-CC--eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc
Q 019117 164 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-DN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240 (346)
Q Consensus 164 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (346)
..+. .|...+.+++|+| +++.|+.++. ++ .|.+||+.... ...+..+.
T Consensus 260 -~~l~---~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~------------------------~~~l~~~~ 310 (415)
T 2hqs_A 260 -RQVT---DGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGA------------------------PQRITWEG 310 (415)
T ss_dssp -EECC---CCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSC------------------------CEECCCSS
T ss_pred -EeCc---CCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCC------------------------EEEEecCC
Confidence 4444 5888999999999 8887777665 45 57777877621 22344466
Q ss_pred cceEEEEec--CCEEEEEeec---CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCC--
Q 019117 241 NYVDCNRWL--GDFILSKSVD---NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG-- 313 (346)
Q Consensus 241 ~~i~~~~~~--~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg-- 313 (346)
..+.++.|+ |++|++++.+ ..|.+||+.+++ . ..+..+. .+.+++|+||+ ++|++++.++
T Consensus 311 ~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~---------~-~~l~~~~-~~~~~~~spdg--~~l~~~s~~~~~ 377 (415)
T 2hqs_A 311 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG---------V-QVLSSTF-LDETPSLAPNG--TMVIYSSSQGMG 377 (415)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC---------E-EECCCSS-SCEEEEECTTS--SEEEEEEEETTE
T ss_pred CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC---------E-EEecCCC-CcCCeEEcCCC--CEEEEEEcCCCc
Confidence 678889998 8888888775 689999998875 2 2333443 78999999999 6788877776
Q ss_pred -cEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117 314 -KIFVWELQSSPPVLIARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 314 -~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~ 346 (346)
.|++||+.++.........+.+.+++|+|.--|
T Consensus 378 ~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~~~ 411 (415)
T 2hqs_A 378 SVLNLVSTDGRFKARLPATDGQVKFPAWSPYLHH 411 (415)
T ss_dssp EEEEEEETTSCCEEECCCSSSEEEEEEECCCCCC
T ss_pred cEEEEEECCCCcEEEeeCCCCCCcCCcccccccc
Confidence 799999987665555556678999999997543
No 129
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.96 E-value=6.5e-26 Score=188.79 Aligned_cols=263 Identities=10% Similarity=0.054 Sum_probs=196.2
Q ss_pred CCCceEEEEEEeecCCCccEEEEEcCC--------cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE
Q 019117 32 GKRPLYAVVFNFIDSRYFNVFATVGGN--------RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (346)
Q Consensus 32 h~~~v~~~~~~p~~~~~~~~la~~~~~--------~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 103 (346)
....+..++|+| +++.+++++.+ .|.+||..+++....+.. ...+..++++ ++|+.++++
T Consensus 39 ~~~~~~~~~~s~----dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~------~~~~~~~~~s--~dg~~l~v~ 106 (353)
T 3vgz_A 39 VGKGAYEMAYSQ----QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN------DLKPFGATIN--NTTQTLWFG 106 (353)
T ss_dssp EESSEEEEEEET----TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE------SSCCCSEEEE--TTTTEEEEE
T ss_pred hccCccceEECC----CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec------CCCcceEEEC--CCCCEEEEE
Confidence 345688999999 67777766632 399999988887776653 2223445555 999844555
Q ss_pred eecCCeEEEEEccCcceeeeeccCCCc---------eEEEEEeCCCCceEEEee--CCCCEEEEecCCCeeEEEecccCC
Q 019117 104 GGINGIIRVIDVSNEKLHKSFVGHGDS---------INEIRTQPLKPSLVVSAS--KDESVRLWNVQTGICILIFAGAGG 172 (346)
Q Consensus 104 ~~~dg~i~iwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~ 172 (346)
...++.|.+||..+++.+..+..+... +.+++|+| +++.+++++ .++.|.+||+.+++.+..+. .
T Consensus 107 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~---~ 182 (353)
T 3vgz_A 107 NTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQ---N 182 (353)
T ss_dssp ETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEEC---C
T ss_pred ecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCceEEEec---C
Confidence 566799999999999988877654422 78999999 666666554 57889999999999888886 3
Q ss_pred CCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee----cccceEEEEe
Q 019117 173 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV----HSNYVDCNRW 248 (346)
Q Consensus 173 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~ 248 (346)
+...+.+++|+| +++.+++++.++.|.+||+.+.+ ....+.. +...+..+.|
T Consensus 183 ~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~ 238 (353)
T 3vgz_A 183 TGKMSTGLALDS-EGKRLYTTNADGELITIDTADNK-----------------------ILSRKKLLDDGKEHFFINISL 238 (353)
T ss_dssp CCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTE-----------------------EEEEEECCCSSSCCCEEEEEE
T ss_pred CCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCe-----------------------EEEEEEcCCCCCCcccceEEE
Confidence 556688999999 88888888889999999998733 2222222 3455777888
Q ss_pred c--CCEEEEEee-cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCc
Q 019117 249 L--GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP 325 (346)
Q Consensus 249 ~--~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~ 325 (346)
+ ++++++++. ++.|.+||+.+++ .+..+.... ...++|+|+++ .++++...++.|.+||+.+++.
T Consensus 239 s~dg~~l~~~~~~~~~v~~~d~~~~~---------~~~~~~~~~--~~~~~~s~dg~-~l~v~~~~~~~v~~~d~~~~~~ 306 (353)
T 3vgz_A 239 DTARQRAFITDSKAAEVLVVDTRNGN---------ILAKVAAPE--SLAVLFNPARN-EAYVTHRQAGKVSVIDAKSYKV 306 (353)
T ss_dssp ETTTTEEEEEESSSSEEEEEETTTCC---------EEEEEECSS--CCCEEEETTTT-EEEEEETTTTEEEEEETTTTEE
T ss_pred CCCCCEEEEEeCCCCEEEEEECCCCc---------EEEEEEcCC--CceEEECCCCC-EEEEEECCCCeEEEEECCCCeE
Confidence 7 776666654 5999999998876 333333332 25689999994 3556666899999999999987
Q ss_pred ceeeeeeeeEEEEEecCCCCC
Q 019117 326 VLIARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 326 ~~~~~~~~~~~~~~~spdg~~ 346 (346)
+........+..++|+|||++
T Consensus 307 ~~~~~~~~~~~~~~~s~dg~~ 327 (353)
T 3vgz_A 307 VKTFDTPTHPNSLALSADGKT 327 (353)
T ss_dssp EEEEECCSEEEEEEECTTSCE
T ss_pred EEEEecCCCCCeEEEcCCCCE
Confidence 777777778899999999973
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=1.5e-25 Score=190.17 Aligned_cols=260 Identities=8% Similarity=0.016 Sum_probs=185.6
Q ss_pred CceEEEEEEeecCCCccEEEEEc----CC-----cEEEEEe--ccCceeee--EeeeecCCCccceEEEEEEEc------
Q 019117 34 RPLYAVVFNFIDSRYFNVFATVG----GN-----RVTVYQC--LEGGVIAA--LQSYVDEDKEESFYTVSWACN------ 94 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~~----~~-----~v~i~~~--~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~------ 94 (346)
..+...+|.+. ...++++|+ .+ .+++||+ .+++.+.. +.. +...+..+++.+.
T Consensus 63 ~~~~~~~w~~~---g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~d~~~~~ 134 (415)
T 2hqs_A 63 QEVQPAAWSAL---GIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKV-----NKQWLRYAGHTASDEVFEK 134 (415)
T ss_dssp GGCCHHHHHTT---TCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEE-----CGGGHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHhc---CCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEc-----ChhHHHHHHHHHHHHHHHH
Confidence 35666677662 235676775 23 3999999 88876532 333 3334443333311
Q ss_pred ------CCCCcEEEEeecC------CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCC---CEEEEecC
Q 019117 95 ------VDGIPFLVAGGIN------GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE---SVRLWNVQ 159 (346)
Q Consensus 95 ------~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~---~i~iwd~~ 159 (346)
+.+. .++.++.+ +.|++||+.. .....+..|...+.+++|+| +++.|++++.++ .|++||+.
T Consensus 135 ~~g~~~~~~~-~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~ 211 (415)
T 2hqs_A 135 LTGIKGAFRT-RIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLA 211 (415)
T ss_dssp HHSSCCCTTC-EEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETT
T ss_pred HcCCCCcCCC-EEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcC-CCCEEEEEEecCCCcEEEEEECC
Confidence 1244 56555544 7999999874 55677778999999999999 889999998875 99999999
Q ss_pred CCeeEEEecccCCCCcceEEEEecCCCCcEEE-EEecCCe--EEEEEccccceeeeeceeecCCCCCCCCccceeceEEE
Q 019117 160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIA-SCGMDNT--VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 236 (346)
Q Consensus 160 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (346)
+++... +. .|...+.+++|+| +++.|+ +++.++. |.+||+.+. ....+
T Consensus 212 tg~~~~-l~---~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~------------------------~~~~l 262 (415)
T 2hqs_A 212 NGAVRQ-VA---SFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASG------------------------QIRQV 262 (415)
T ss_dssp TCCEEE-EE---CCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTC------------------------CEEEC
T ss_pred CCcEEE-ee---cCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCC------------------------CEEeC
Confidence 888764 44 4788999999999 777666 6666654 999999872 12455
Q ss_pred eecccceEEEEec--CCEEEEEee-cC--eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcC
Q 019117 237 SVHSNYVDCNRWL--GDFILSKSV-DN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR 311 (346)
Q Consensus 237 ~~~~~~i~~~~~~--~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~ 311 (346)
..|...+.++.|+ |++|+.++. ++ .|.+||+.+++ ...+..+...+..++|+||+ ++|++++.
T Consensus 263 ~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~----------~~~l~~~~~~~~~~~~spdG--~~l~~~~~ 330 (415)
T 2hqs_A 263 TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA----------PQRITWEGSQNQDADVSSDG--KFMVMVSS 330 (415)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC----------CEECCCSSSEEEEEEECTTS--SEEEEEEE
T ss_pred cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC----------EEEEecCCCcccCeEECCCC--CEEEEEEC
Confidence 6677889999998 778888776 44 67778888764 22334455678899999999 67777765
Q ss_pred C---CcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117 312 E---GKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 312 d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~ 346 (346)
+ ..|++||+.+++....... ..+..++|+|||++
T Consensus 331 ~~g~~~i~~~d~~~~~~~~l~~~-~~~~~~~~spdg~~ 367 (415)
T 2hqs_A 331 NGGQQHIAKQDLATGGVQVLSST-FLDETPSLAPNGTM 367 (415)
T ss_dssp CSSCEEEEEEETTTCCEEECCCS-SSCEEEEECTTSSE
T ss_pred cCCceEEEEEECCCCCEEEecCC-CCcCCeEEcCCCCE
Confidence 3 5899999999876433322 36788999999973
No 131
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=6.7e-25 Score=177.90 Aligned_cols=242 Identities=12% Similarity=0.152 Sum_probs=176.1
Q ss_pred cCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccC-cceeeeeccC-CCceE
Q 019117 56 GGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN-EKLHKSFVGH-GDSIN 132 (346)
Q Consensus 56 ~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~-~~~v~ 132 (346)
+.++ |++||+.+++...... +...+.+++|+ |+|+ +|++++ ++.|.+||+.+ ++.......+ ...+.
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~------~~~~v~~~~~s--pdg~-~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 88 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQ------TPELFEAPNWS--PDGK-YLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNN 88 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEE------ESSCCEEEEEC--TTSS-EEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCS
T ss_pred CcceeEEEEeCCCCceeeecc------CCcceEeeEEC--CCCC-EEEEEc-CCeEEEEeCCCCCCceEecccccccccc
Confidence 3455 9999988776554333 45677777776 9999 888876 88999999999 8777666655 46789
Q ss_pred EEEEeCCCCceEEEee--CCCCEEEEec--CCCeeEEEecccCCCCcceEEEEecCCCCcEEE-EEecCCeEEEEEcccc
Q 019117 133 EIRTQPLKPSLVVSAS--KDESVRLWNV--QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA-SCGMDNTVKIWSMKEF 207 (346)
Q Consensus 133 ~~~~~~~~~~~l~s~~--~d~~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~ 207 (346)
+++|+| ++++|++++ .++...||.+ ..++ ...+. +...+..++|+| ++..++ ++..++.+++|++...
T Consensus 89 ~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~----~~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~ 161 (297)
T 2ojh_A 89 DHGISP-DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMT----KNLPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDID 161 (297)
T ss_dssp CCEECT-TSSEEEEEECTTTSSCEEEEEETTCCC-CEECC----SSSSEEEEEECT-TSSEEEEEEEETTEEEEEEEETT
T ss_pred ceEECC-CCCEEEEEEeCCCCcceEEEEECCCCc-eEEee----cCCCccceEECC-CCCEEEEEECCCCceEEEEEECC
Confidence 999999 888888888 3345556554 4444 34443 334589999999 666555 8888999999997641
Q ss_pred ceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe-ecCeEEEEcCCCCCCCCCCcccccccc
Q 019117 208 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS-VDNEIVLWEPKMKEQSPGEGTADILQK 284 (346)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 284 (346)
. .....+..+...+.++.|+ +++++.++ .++.+++|+++.... .+..
T Consensus 162 ~----------------------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~--------~~~~ 211 (297)
T 2ojh_A 162 S----------------------GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS--------SVER 211 (297)
T ss_dssp T----------------------CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS--------CEEE
T ss_pred C----------------------CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCC--------CcEE
Confidence 1 1233455677788999998 77777665 589999999863221 3455
Q ss_pred ccCCCcCeeEEEEeecCCcceEEEEcCC-----------CcEEEEEcCCCCcceeeeee---eeEEEEEecCCCCC
Q 019117 285 YPVPECDIWFIKFSCDFHYNAAAIGNRE-----------GKIFVWELQSSPPVLIARLI---CFSLHVKYNPQSVY 346 (346)
Q Consensus 285 ~~~~~~~v~~~~~s~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~---~~~~~~~~spdg~~ 346 (346)
+..+...+..++|+|++ ++|++++.+ +.|++||+.+++........ ..+..++|+|||++
T Consensus 212 ~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 285 (297)
T 2ojh_A 212 ITDSAYGDWFPHPSPSG--DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDE 285 (297)
T ss_dssp CCCCSEEEEEEEECTTS--SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSE
T ss_pred EecCCcccCCeEECCCC--CEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCE
Confidence 56667788999999999 677777665 56999999998765555443 34778999999974
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=5.4e-24 Score=186.04 Aligned_cols=259 Identities=11% Similarity=0.072 Sum_probs=188.6
Q ss_pred EEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEc--c
Q 019117 40 VFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDV--S 116 (346)
Q Consensus 40 ~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~--~ 116 (346)
+|+| ++.++++++.++ |.+||..+++.+..+.. ...+..+++ +|+|+ +|++++.|+.|.+||+ .
T Consensus 144 ~~~p----~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~------g~~~~~v~~--spdg~-~l~v~~~d~~V~v~D~~~~ 210 (543)
T 1nir_A 144 DLDL----PNLFSVTLRDAGQIALVDGDSKKIVKVIDT------GYAVHISRM--SASGR-YLLVIGRDARIDMIDLWAK 210 (543)
T ss_dssp CCCG----GGEEEEEEGGGTEEEEEETTTCCEEEEEEC------STTEEEEEE--CTTSC-EEEEEETTSEEEEEETTSS
T ss_pred ccCC----CCEEEEEEcCCCeEEEEECCCceEEEEEec------CcccceEEE--CCCCC-EEEEECCCCeEEEEECcCC
Confidence 3777 678889988887 99999999888777762 122555555 49999 9999999999999999 8
Q ss_pred CcceeeeeccCCCceEEEEEeC----CCCceEEEee-CCCCEEEEecCCCeeEEEecccCC-------C-CcceEEEEec
Q 019117 117 NEKLHKSFVGHGDSINEIRTQP----LKPSLVVSAS-KDESVRLWNVQTGICILIFAGAGG-------H-RNEVLSVDFH 183 (346)
Q Consensus 117 ~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~-------~-~~~v~~~~~~ 183 (346)
+++.+..+. +...+..++|+| + ++++++++ .+++|.+||..+++++..+..... | ...+.++.++
T Consensus 211 t~~~~~~i~-~g~~p~~va~sp~~~~d-g~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s 288 (543)
T 1nir_A 211 EPTKVAEIK-IGIEARSVESSKFKGYE-DRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS 288 (543)
T ss_dssp SCEEEEEEE-CCSEEEEEEECCSTTCT-TTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred CCcEEEEEe-cCCCcceEEeCCCcCCC-CCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEEC
Confidence 888888887 455679999998 5 45666665 589999999999999888763110 2 2378999999
Q ss_pred CCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEE-eecC
Q 019117 184 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK-SVDN 260 (346)
Q Consensus 184 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~-~~d~ 260 (346)
|++..++++...++.|.+||+..... ..+..+ .+...+..+.|+ +++++++ ..++
T Consensus 289 ~~~~~~~vs~~~~g~i~vvd~~~~~~---------------------l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~ 346 (543)
T 1nir_A 289 HEHPEFIVNVKETGKVLLVNYKDIDN---------------------LTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSN 346 (543)
T ss_dssp SSSSEEEEEETTTTEEEEEECTTSSS---------------------CEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGT
T ss_pred CCCCEEEEEECCCCeEEEEEecCCCc---------------------ceeEEe-ccCcCccCceECCCCCEEEEEecCCC
Confidence 96677788888899999999987321 011122 245567778887 7776655 4589
Q ss_pred eEEEEcCCCCCCCCCCccccccccccC----CCcCeeEEEEeecCCcceEEEEc-CCCcEEEEEcCC-------CCccee
Q 019117 261 EIVLWEPKMKEQSPGEGTADILQKYPV----PECDIWFIKFSCDFHYNAAAIGN-REGKIFVWELQS-------SPPVLI 328 (346)
Q Consensus 261 ~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~iwd~~~-------~~~~~~ 328 (346)
+|.+||+.+++ ++..+.. |.+....+ ++|++. .+++++. .|++|.+||+.+ .+.+..
T Consensus 347 ~v~v~D~~tg~---------l~~~i~~g~~ph~g~g~~~-~~p~~g-~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~ 415 (543)
T 1nir_A 347 KVAVIDSKDRR---------LSALVDVGKTPHPGRGANF-VHPKYG-PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAE 415 (543)
T ss_dssp EEEEEETTTTE---------EEEEEECSSSBCCTTCEEE-EETTTE-EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE
T ss_pred eEEEEECCCCe---------EEEeeccCCCCCCCCCccc-CCCCCc-cEEEeccCCCceEEEEEeCCCCCchhcCeEEEE
Confidence 99999999886 3444432 33333333 467743 5777775 689999999998 555555
Q ss_pred eeeee-eEEEEEecCCCCC
Q 019117 329 ARLIC-FSLHVKYNPQSVY 346 (346)
Q Consensus 329 ~~~~~-~~~~~~~spdg~~ 346 (346)
....+ .+..++|+|||++
T Consensus 416 l~~~g~~~~~v~~~pdg~~ 434 (543)
T 1nir_A 416 LQGQGGGSLFIKTHPKSSH 434 (543)
T ss_dssp EECSCSCCCCEECCTTCCE
T ss_pred EEcCCCCceEEEcCCCCCc
Confidence 44432 3577999999974
No 133
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.94 E-value=3.6e-24 Score=182.36 Aligned_cols=261 Identities=15% Similarity=0.140 Sum_probs=168.8
Q ss_pred CCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCce----------eeeEeeeecCCCccceEEEEEEEcCCCCcEE
Q 019117 32 GKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGV----------IAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (346)
Q Consensus 32 h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 101 (346)
+...++.+++++ ++.++++++.+++++|+...... ...........+...|.+++|+ |+|+ +|
T Consensus 35 ~~~~~n~lavs~----~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s--pdg~-~l 107 (434)
T 2oit_A 35 PKERSSLLAVSN----KYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALS--CDNL-TL 107 (434)
T ss_dssp CCSCCBCEEEET----TTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEEC--TTSC-EE
T ss_pred CCCCccEEEEec----CCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEc--CCCC-EE
Confidence 344688999998 67889999888999988643211 0100000001134568777776 9998 88
Q ss_pred E----EeecCCeEEEEEccCc--------ce---eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEE
Q 019117 102 V----AGGINGIIRVIDVSNE--------KL---HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI 166 (346)
Q Consensus 102 ~----~~~~dg~i~iwd~~~~--------~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 166 (346)
+ +|+.|+.|++||+.++ +. +..+.+|...|.+++|+|.++.+|++++.||+|++||++++..+..
T Consensus 108 av~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 108 SACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceee
Confidence 8 7889999999998765 21 4556679999999999995488999999999999999998877665
Q ss_pred ecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEE
Q 019117 167 FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN 246 (346)
Q Consensus 167 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 246 (346)
.. +|...|++++|+| ++.+|++|+.||.|++||++. ........ +......|...|.++
T Consensus 188 ~~---~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~~-~~~~~~~~----------------~~~~~~~~~~~v~~v 246 (434)
T 2oit_A 188 TL---PSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPTL-QEKKVIPC----------------PPFYESDHPVRVLDV 246 (434)
T ss_dssp EE---CGGGCEEEEEECT-TSSCEEEEETTSCEEEECTTC-CEEEEECC----------------CTTCCTTSCEEEEEE
T ss_pred cc---CCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccCC-cccccccC----------------CcccCCCCceeEEEE
Confidence 55 6889999999999 899999999999999999983 11000000 000001234478999
Q ss_pred Eec-CC-EEEE-EeecC------eEEEEcCCCCCCCCCC---ccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCc
Q 019117 247 RWL-GD-FILS-KSVDN------EIVLWEPKMKEQSPGE---GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK 314 (346)
Q Consensus 247 ~~~-~~-~l~~-~~~d~------~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~ 314 (346)
.|+ .. ++++ ...|| .+++|++...+..... ....+...+.+...+-..+..-++.+ .++++.+..+.
T Consensus 247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~-l~~v~s~~s~d 325 (434)
T 2oit_A 247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWD-LVLAASAASTE 325 (434)
T ss_dssp EEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGT-EEEEEETTCSB
T ss_pred EEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCC-EEEEecCCCCc
Confidence 998 33 3333 22332 3999999865321110 01111111112222333344446663 45555555666
Q ss_pred EEEEEcC
Q 019117 315 IFVWELQ 321 (346)
Q Consensus 315 i~iwd~~ 321 (346)
|.+....
T Consensus 326 v~vl~~~ 332 (434)
T 2oit_A 326 VSILARQ 332 (434)
T ss_dssp CEEEEEC
T ss_pred eeEEEec
Confidence 7776643
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=2.1e-23 Score=172.11 Aligned_cols=256 Identities=10% Similarity=0.024 Sum_probs=176.2
Q ss_pred ccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec-CCeEEEEEccCcce-eeeec
Q 019117 49 FNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI-NGIIRVIDVSNEKL-HKSFV 125 (346)
Q Consensus 49 ~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~-~~~~~ 125 (346)
+.++++++.++ |.+||..+++....+.. +.... .++| +|+|+ ++++++. ++.|.+||+.+++. ...+.
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-----~~~~~-~~~~--s~dg~-~l~~~~~~~~~i~~~d~~~~~~~~~~~~ 80 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITL-----GYDFV-DTAI--TSDCS-NVVVTSDFCQTLVQIETQLEPPKVVAIQ 80 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEEC-----CCCEE-EEEE--CSSSC-EEEEEESTTCEEEEEECSSSSCEEEEEE
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEc-----cCCcc-eEEE--cCCCC-EEEEEeCCCCeEEEEECCCCceeEEecc
Confidence 45677777776 99999988887666552 23333 4554 59998 5555554 88999999999987 77777
Q ss_pred cCCCceEEEEEeCCCCceEEEeeCCC---CEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCc-EEEEEecCCe-EE
Q 019117 126 GHGDSINEIRTQPLKPSLVVSASKDE---SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY-RIASCGMDNT-VK 200 (346)
Q Consensus 126 ~~~~~v~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~-i~ 200 (346)
.+..+..+++|+| ++++++++..++ .|.+||+.+++.+..+. ....+.+++|+| +++ ++++...++. |.
T Consensus 81 ~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~sp-dg~~l~~~~~~~~~~i~ 154 (331)
T 3u4y_A 81 EGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP----IPYDAVGIAISP-NGNGLILIDRSSANTVR 154 (331)
T ss_dssp ECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEE----CCTTEEEEEECT-TSSCEEEEEETTTTEEE
T ss_pred cCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEE----CCCCccceEECC-CCCEEEEEecCCCceEE
Confidence 7777666699999 888888665553 89999999999888876 455679999999 665 5555566688 99
Q ss_pred EEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEE-EeecCeEEEEcCCCCCCCCCCc
Q 019117 201 IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS-KSVDNEIVLWEPKMKEQSPGEG 277 (346)
Q Consensus 201 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~-~~~d~~i~iwd~~~~~~~~~~~ 277 (346)
+|++........ .. ............+.|+ ++++++ +..++.|.+||+.+++.
T Consensus 155 ~~~~~~~g~~~~------------------~~-~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~----- 210 (331)
T 3u4y_A 155 RFKIDADGVLFD------------------TG-QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN----- 210 (331)
T ss_dssp EEEECTTCCEEE------------------EE-EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS-----
T ss_pred EEEECCCCcEee------------------cC-CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc-----
Confidence 999875211000 00 1111334456788888 665544 45689999999987762
Q ss_pred cccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeee----------EEEEEecCCCCC
Q 019117 278 TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICF----------SLHVKYNPQSVY 346 (346)
Q Consensus 278 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~~~~spdg~~ 346 (346)
...+..+..+ ..+..++|+||++ .++++...++.|.+||+.+++.......... ...++|+|||++
T Consensus 211 -~~~~~~~~~~-~~~~~~~~spdg~-~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 286 (331)
T 3u4y_A 211 -ITLLNAVGTN-NLPGTIVVSRDGS-TVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETK 286 (331)
T ss_dssp -CEEEEEEECS-SCCCCEEECTTSS-EEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSE
T ss_pred -cceeeeccCC-CCCceEEECCCCC-EEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCE
Confidence 0114444433 5678899999994 2444555688999999999876332222211 234899999974
No 135
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=2.8e-23 Score=172.04 Aligned_cols=260 Identities=11% Similarity=0.063 Sum_probs=166.3
Q ss_pred cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC-CeEEEEEcc--Ccc--eeee
Q 019117 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN-GIIRVIDVS--NEK--LHKS 123 (346)
Q Consensus 50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~--~~~--~~~~ 123 (346)
.++++++.++ |.+|++........+.... +...+..++|+ |+|+ +|++++.+ +.|.+|++. +++ .+..
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s--pdg~-~l~~~~~~~~~v~~~~~~~~~~~~~~~~~ 79 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVVD---VPGQVQPMVVS--PDKR-YLYVGVRPEFRVLAYRIAPDDGALTFAAE 79 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEE---CSSCCCCEEEC--TTSS-EEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeEe---cCCCCceEEEC--CCCC-EEEEeecCCCeEEEEEecCCCCceeeccc
Confidence 4555546555 9999986433333333221 44456666665 9998 78888776 999999997 554 3444
Q ss_pred eccCCCceEEEEEeCCCCceEEEee-CCCCEEEEecC---CCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe-cCCe
Q 019117 124 FVGHGDSINEIRTQPLKPSLVVSAS-KDESVRLWNVQ---TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNT 198 (346)
Q Consensus 124 ~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~ 198 (346)
+..+. .+..++|+| +++++++++ .++.|.+||+. ..+.+..+. ....+.+++|+| +++++++++ .++.
T Consensus 80 ~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~s~-dg~~l~~~~~~~~~ 152 (343)
T 1ri6_A 80 SALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE----GLDGCHSANISP-DNRTLWVPALKQDR 152 (343)
T ss_dssp EECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC----CCTTBCCCEECT-TSSEEEEEEGGGTE
T ss_pred cccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEECCCCcccccccccc----CCCCceEEEECC-CCCEEEEecCCCCE
Confidence 55444 789999999 777665554 58899999994 334444444 345688999999 777677666 8999
Q ss_pred EEEEEccc-cceeeeeceeecCCCCCCCCccceeceE--EEee-cccceEEEEec--CCEEEEE-eecCeEEEEcCCCCC
Q 019117 199 VKIWSMKE-FWTYVEKSFTWTDLPSKFPTKYVQFPVF--IASV-HSNYVDCNRWL--GDFILSK-SVDNEIVLWEPKMKE 271 (346)
Q Consensus 199 i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~i~~~~~~--~~~l~~~-~~d~~i~iwd~~~~~ 271 (346)
|.+||+.. .... ... .... ....+..+.|+ +++++++ ..++.|.+|+++...
T Consensus 153 v~~~d~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~ 211 (343)
T 1ri6_A 153 ICLFTVSDDGHLV---------------------AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH 211 (343)
T ss_dssp EEEEEECTTSCEE---------------------EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTT
T ss_pred EEEEEecCCCcee---------------------eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCC
Confidence 99999976 2210 011 1122 23457778887 6666555 478999999996421
Q ss_pred CCCCCccccccccccC---CCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC--CCCccee--eeeeeeEEEEEecCCC
Q 019117 272 QSPGEGTADILQKYPV---PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ--SSPPVLI--ARLICFSLHVKYNPQS 344 (346)
Q Consensus 272 ~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~--~~~~~~~~~~~~spdg 344 (346)
.... .......+.. ....+..++|+|+++ .+++++..++.|.+||+. +++.... ......+..++|+|||
T Consensus 212 g~~~--~~~~~~~~~~~~~~~~~~~~i~~s~dg~-~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 288 (343)
T 1ri6_A 212 GNIE--CVQTLDMMPENFSDTRWAADIHITPDGR-HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSG 288 (343)
T ss_dssp SCCE--EEEEEECSCTTCCSCCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTS
T ss_pred CcEE--EEeeccccCccccccCCccceEECCCCC-EEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCC
Confidence 1000 0001111111 123567899999994 244466789999999998 3333222 2333447789999999
Q ss_pred CC
Q 019117 345 VY 346 (346)
Q Consensus 345 ~~ 346 (346)
++
T Consensus 289 ~~ 290 (343)
T 1ri6_A 289 KY 290 (343)
T ss_dssp SE
T ss_pred CE
Confidence 73
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=1.1e-22 Score=168.42 Aligned_cols=274 Identities=12% Similarity=0.100 Sum_probs=175.3
Q ss_pred cCCCceEEEEEEeecCCCccEEEEEcCC-c-EEEEEec--cCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee-
Q 019117 31 EGKRPLYAVVFNFIDSRYFNVFATVGGN-R-VTVYQCL--EGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG- 105 (346)
Q Consensus 31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~-~-v~i~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~- 105 (346)
.|...+.+++|+| ++++|++++.+ + |.+|++. ++.. ..+..+.. ...+..++|+ |+|+ +|++++
T Consensus 35 ~~~~~~~~~~~sp----dg~~l~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~s--~dg~-~l~~~~~ 103 (343)
T 1ri6_A 35 DVPGQVQPMVVSP----DKRYLYVGVRPEFRVLAYRIAPDDGAL-TFAAESAL---PGSLTHISTD--HQGQ-FVFVGSY 103 (343)
T ss_dssp ECSSCCCCEEECT----TSSEEEEEETTTTEEEEEEECTTTCCE-EEEEEEEC---SSCCSEEEEC--TTSS-EEEEEET
T ss_pred ecCCCCceEEECC----CCCEEEEeecCCCeEEEEEecCCCCce-eecccccc---CCCCcEEEEc--CCCC-EEEEEec
Confidence 4677899999999 77877777764 4 9999987 4332 22322221 2245556655 9998 665555
Q ss_pred cCCeEEEEEc---cCcceeeeeccCCCceEEEEEeCCCCceEEEee-CCCCEEEEecCC-CeeEE----EecccCCCCcc
Q 019117 106 INGIIRVIDV---SNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDESVRLWNVQT-GICIL----IFAGAGGHRNE 176 (346)
Q Consensus 106 ~dg~i~iwd~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~-~~~~~----~~~~~~~~~~~ 176 (346)
.++.|.+||+ .+.+.+..+..+ ..+.+++|+| +++.+++++ .++.|.+||+.+ ++... .+.. .....
T Consensus 104 ~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~~~~ 179 (343)
T 1ri6_A 104 NAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT--VEGAG 179 (343)
T ss_dssp TTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC--STTCC
T ss_pred CCCeEEEEECCCCccccccccccCC-CCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCceeeeccccccc--CCCCC
Confidence 5889999999 444455555543 4588999999 777777666 889999999987 54432 2221 23457
Q ss_pred eEEEEecCCCCcEE-EEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe---ecccceEEEEec--C
Q 019117 177 VLSVDFHPSDIYRI-ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS---VHSNYVDCNRWL--G 250 (346)
Q Consensus 177 v~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~--~ 250 (346)
+.+++|+| ++.++ +++..++.|.+||+.......... .....+. .....+..++|+ +
T Consensus 180 ~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~----------------~~~~~~~~~~~~~~~~~~i~~s~dg 242 (343)
T 1ri6_A 180 PRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGNIECV----------------QTLDMMPENFSDTRWAADIHITPDG 242 (343)
T ss_dssp EEEEEECT-TSSEEEEEETTTTEEEEEESSCTTSCCEEE----------------EEEECSCTTCCSCCCEEEEEECTTS
T ss_pred cceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEE----------------eeccccCccccccCCccceEECCCC
Confidence 88999999 67655 455588999999996411100000 0000000 012346678888 6
Q ss_pred CEEE-EEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc-CCCcEEEEEcC--CCCcc
Q 019117 251 DFIL-SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-REGKIFVWELQ--SSPPV 326 (346)
Q Consensus 251 ~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~iwd~~--~~~~~ 326 (346)
++|+ +...++.|.+||+..... ....+..+..+. .+..++|+|++ ++|++++ .++.|.+|++. +++..
T Consensus 243 ~~l~v~~~~~~~i~v~d~~~~~~-----~~~~~~~~~~~~-~~~~~~~s~dg--~~l~~~~~~~~~v~v~~~d~~~g~~~ 314 (343)
T 1ri6_A 243 RHLYACDRTASLITVFSVSEDGS-----VLSKEGFQPTET-QPRGFNVDHSG--KYLIAAGQKSHHISVYEIVGEQGLLH 314 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTSC-----CEEEEEEEECSS-SCCCEEECTTS--SEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred CEEEEEecCCCEEEEEEEcCCCC-----ceEEeeeecCCC-ccceEEECCCC--CEEEEecCCCCeEEEEEEcCCCceee
Confidence 6666 445799999999983210 111333444343 38889999999 5566665 68999999554 55443
Q ss_pred eeee--eeeeEEEEEecCCC
Q 019117 327 LIAR--LICFSLHVKYNPQS 344 (346)
Q Consensus 327 ~~~~--~~~~~~~~~~spdg 344 (346)
.... ....+.+++|.|+.
T Consensus 315 ~~~~~~~g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 315 EKGRYAVGQGPMWVVVNAHE 334 (343)
T ss_dssp EEEEEECSSSCCEEEEEEEC
T ss_pred EccccccCCCCeeEEEEccc
Confidence 3333 33457788888764
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=1.4e-23 Score=191.71 Aligned_cols=262 Identities=11% Similarity=0.003 Sum_probs=185.1
Q ss_pred ceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCc--eeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117 35 PLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGG--VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (346)
Q Consensus 35 ~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 112 (346)
.|.+++||| +|++|++++.+.|.+||+.++. ....+.. +...+..++|+ |||+ +|+.++ ++.|.+
T Consensus 110 ~v~~~~~Sp----Dg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~-----~~~~~~~~~~S--PDG~-~la~~~-~~~i~~ 176 (741)
T 2ecf_A 110 GIVDYQWSP----DAQRLLFPLGGELYLYDLKQEGKAAVRQLTH-----GEGFATDAKLS--PKGG-FVSFIR-GRNLWV 176 (741)
T ss_dssp ESCCCEECT----TSSEEEEEETTEEEEEESSSCSTTSCCBCCC-----SSSCEEEEEEC--TTSS-EEEEEE-TTEEEE
T ss_pred CcceeEECC----CCCEEEEEeCCcEEEEECCCCCcceEEEccc-----CCcccccccCC--CCCC-EEEEEe-CCcEEE
Confidence 488999999 8899999988779999988772 2222321 44567767666 9999 888887 569999
Q ss_pred EEccCcceeeeeccCCCc----------------eEEEEEeCCCCceEEEeeCCC-------------------------
Q 019117 113 IDVSNEKLHKSFVGHGDS----------------INEIRTQPLKPSLVVSASKDE------------------------- 151 (346)
Q Consensus 113 wd~~~~~~~~~~~~~~~~----------------v~~~~~~~~~~~~l~s~~~d~------------------------- 151 (346)
||+.+++.......+... +..++|+| +++.|++++.|+
T Consensus 177 ~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~ 255 (741)
T 2ecf_A 177 IDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPA 255 (741)
T ss_dssp EETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred EecCCCCEEEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCC
Confidence 999988766555444332 47899999 888888887665
Q ss_pred --------CEEEEecCC-CeeEEEecccCCCCcceEEEEecCCCCcEEEEEec-----CCeEEEEEccccceeeeeceee
Q 019117 152 --------SVRLWNVQT-GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-----DNTVKIWSMKEFWTYVEKSFTW 217 (346)
Q Consensus 152 --------~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~ 217 (346)
.|.+||+.+ ++...... ...|...+..++| | +++.|+.++. +..|.+||+.+.+
T Consensus 256 ~g~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g~--------- 323 (741)
T 2ecf_A 256 AGDANVQVKLGVISPAEQAQTQWIDL-GKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASNQ--------- 323 (741)
T ss_dssp TTSCCCEEEEEEECSSTTCCCEEECC-CSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTTCC---------
T ss_pred CCCCCCeeEEEEEECCCCCceEEecC-CCCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCCCc---------
Confidence 789999988 77554432 1137788999999 9 7777776653 5679999998732
Q ss_pred cCCCCCCCCccceeceEEEeeccc----ceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcC
Q 019117 218 TDLPSKFPTKYVQFPVFIASVHSN----YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD 291 (346)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (346)
.......+.. .+..+.|+ |+++++++.|+.++||.++... . ...+..+...
T Consensus 324 --------------~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~--------~-~~~l~~~~~~ 380 (741)
T 2ecf_A 324 --------------QRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG--------K-AAALTHGNWS 380 (741)
T ss_dssp --------------EEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS--------C-EEESCCSSSC
T ss_pred --------------eEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCC--------C-eeeeeecceE
Confidence 2222333332 34567787 7788888999988888776322 1 3445556667
Q ss_pred eeEE-EEeecCCcceEEEEcCCC--cEEEEEcCC-CCcceeeeeeeeEEEEEecCCCCC
Q 019117 292 IWFI-KFSCDFHYNAAAIGNREG--KIFVWELQS-SPPVLIARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 292 v~~~-~~s~~~~~~~l~~~~~dg--~i~iwd~~~-~~~~~~~~~~~~~~~~~~spdg~~ 346 (346)
+..+ .|+|+++ .++++++.++ .++||++.. +...........+..++|||||++
T Consensus 381 v~~~~~~s~dg~-~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~ 438 (741)
T 2ecf_A 381 VDELLAVDEKAG-LAYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSASFARNASV 438 (741)
T ss_dssp EEEEEEEETTTT-EEEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEECTTSSE
T ss_pred EEeEeEEeCCCC-EEEEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEEECCCCCE
Confidence 8777 5999994 3445666666 899999865 443333333445778999999974
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=1.6e-23 Score=190.23 Aligned_cols=263 Identities=9% Similarity=0.060 Sum_probs=181.1
Q ss_pred CceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEE
Q 019117 34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVI 113 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw 113 (346)
..|.+++|+| + ..++.+.++.+.+||+.+++...... +...+..++|+ |||+ +|+++ .++.|.+|
T Consensus 82 ~~v~~~~~sp----d-~~~~~~~~~~i~~~d~~~~~~~~l~~------~~~~~~~~~~S--pdG~-~la~~-~~~~i~v~ 146 (706)
T 2z3z_A 82 FPSFRTLDAG----R-GLVVLFTQGGLVGFDMLARKVTYLFD------TNEETASLDFS--PVGD-RVAYV-RNHNLYIA 146 (706)
T ss_dssp CCCEEEEETT----T-TEEEEEETTEEEEEETTTTEEEEEEC------CTTCCTTCEEC--TTSS-EEEEE-ETTEEEEE
T ss_pred cCceeEEECC----C-CeEEEEECCEEEEEECCCCceEEccC------CcccccCCcCC--CCCC-EEEEE-ECCeEEEE
Confidence 5699999999 6 45555555669999988765543322 23345556665 9999 88885 68999999
Q ss_pred EccC-----cceeeeeccCCCc--------------eEEEEEeCCCCceEEEee--------------------------
Q 019117 114 DVSN-----EKLHKSFVGHGDS--------------INEIRTQPLKPSLVVSAS-------------------------- 148 (346)
Q Consensus 114 d~~~-----~~~~~~~~~~~~~--------------v~~~~~~~~~~~~l~s~~-------------------------- 148 (346)
|+.+ ++.......+... +.++.|+| ++++|++++
T Consensus 147 ~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y 225 (706)
T 2z3z_A 147 RGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYY 225 (706)
T ss_dssp ECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECC
T ss_pred ecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeC
Confidence 9998 7766544444332 48999999 888888887
Q ss_pred -------CCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCC-----eEEEEEccccceeeeecee
Q 019117 149 -------KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-----TVKIWSMKEFWTYVEKSFT 216 (346)
Q Consensus 149 -------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~ 216 (346)
.+..|.+||+.+++...... ...|...+.+++|+| +++.|++++.++ .|.+||+.+.+..
T Consensus 226 ~~~g~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~------ 297 (706)
T 2z3z_A 226 PMAGTPSHHVTVGIYHLATGKTVYLQT-GEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFV------ 297 (706)
T ss_dssp CBTTSCCCEEEEEEEETTTTEEEECCC-CSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEE------
T ss_pred CCCCCCCCeeEEEEEECCCCceEeecc-CCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCcee------
Confidence 44679999999887654432 114667899999999 888888877775 8999999874110
Q ss_pred ecCCCCCCCCccceeceEEEeeccc---ceEEEEec----CCEEEEEeecCeEEEEcCC-CCCCCCCCccccccccccCC
Q 019117 217 WTDLPSKFPTKYVQFPVFIASVHSN---YVDCNRWL----GDFILSKSVDNEIVLWEPK-MKEQSPGEGTADILQKYPVP 288 (346)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~----~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~ 288 (346)
..+. ...+.. .+.++.|+ |+++++++.|+.++||+++ +++ .+..+..+
T Consensus 298 --------------~~~~-~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~---------~~~~l~~~ 353 (706)
T 2z3z_A 298 --------------RTLF-VETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR---------LIRQVTKG 353 (706)
T ss_dssp --------------EEEE-EEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC---------EEEECCCS
T ss_pred --------------eEEE-EccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC---------EEEecCCC
Confidence 0000 011111 12345553 5688888889999999876 332 44555666
Q ss_pred CcCeeE-EEEeecCCcceEEEEcCCC----cEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117 289 ECDIWF-IKFSCDFHYNAAAIGNREG----KIFVWELQSSPPVLIARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 289 ~~~v~~-~~~s~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~ 346 (346)
...+.. ++|+|+++ .++++++.++ .|+.||+.+++.. .......+..++|||||++
T Consensus 354 ~~~v~~~~~~spdg~-~l~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~ 414 (706)
T 2z3z_A 354 EWEVTNFAGFDPKGT-RLYFESTEASPLERHFYCIDIKGGKTK-DLTPESGMHRTQLSPDGSA 414 (706)
T ss_dssp SSCEEEEEEECTTSS-EEEEEESSSCTTCBEEEEEETTCCCCE-ESCCSSSEEEEEECTTSSE
T ss_pred CeEEEeeeEEcCCCC-EEEEEecCCCCceEEEEEEEcCCCCce-eccCCCceEEEEECCCCCE
Confidence 667776 79999994 3445555555 6777888777633 3334455788999999974
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=3e-22 Score=165.18 Aligned_cols=283 Identities=11% Similarity=0.029 Sum_probs=173.9
Q ss_pred eeeeecccCCCceEEEEEEeecCCCccEEEEEcC-Cc-EEEEEeccCce-eeeEeeeecCCCccceEEEEEEEcCCCCcE
Q 019117 24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGG-NR-VTVYQCLEGGV-IAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (346)
Q Consensus 24 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~-~~-v~i~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (346)
++...+..+...+ +++|+| +++++++++. ++ |.+||..+++. ...+.. +.....+++| +|+|+ +
T Consensus 31 ~~~~~~~~~~~~~-~~~~s~----dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~~--s~dg~-~ 97 (331)
T 3u4y_A 31 EILNQITLGYDFV-DTAITS----DCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE-----GQSSMADVDI--TPDDQ-F 97 (331)
T ss_dssp CEEEEEECCCCEE-EEEECS----SSCEEEEEESTTCEEEEEECSSSSCEEEEEEE-----CSSCCCCEEE--CTTSS-E
T ss_pred ceeeeEEccCCcc-eEEEcC----CCCEEEEEeCCCCeEEEEECCCCceeEEeccc-----CCCCccceEE--CCCCC-E
Confidence 3444444556666 999999 6775555444 44 99999988876 444442 2222222455 59999 7
Q ss_pred EEEeecCC---eEEEEEccCcceeeeeccCCCceEEEEEeCCCCc-eEEEeeCCCC-EEEEecCCCeeEEEe-cccCCCC
Q 019117 101 LVAGGING---IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS-LVVSASKDES-VRLWNVQTGICILIF-AGAGGHR 174 (346)
Q Consensus 101 l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~-i~iwd~~~~~~~~~~-~~~~~~~ 174 (346)
|+++..++ .|.+||+.+++.+..+..+ ....+++|+| +++ ++++...++. |.+|++.....+... .......
T Consensus 98 l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~ 175 (331)
T 3u4y_A 98 AVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISP-NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGG 175 (331)
T ss_dssp EEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECT-TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSS
T ss_pred EEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECC-CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCC
Confidence 87665553 8999999999988877644 4568999999 665 5555566688 999998754333111 0000245
Q ss_pred cceEEEEecCCCCc-EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CC
Q 019117 175 NEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD 251 (346)
Q Consensus 175 ~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~ 251 (346)
..+..++|+| +++ +++++..++.|.+||+.+.+. ...+..+. ....+..++|+ |+
T Consensus 176 ~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~~~--------------------~~~~~~~~-~~~~~~~~~~spdg~ 233 (331)
T 3u4y_A 176 TRPFNITFTP-DGNFAFVANLIGNSIGILETQNPEN--------------------ITLLNAVG-TNNLPGTIVVSRDGS 233 (331)
T ss_dssp SSEEEEEECT-TSSEEEEEETTTTEEEEEECSSTTS--------------------CEEEEEEE-CSSCCCCEEECTTSS
T ss_pred CCccceEECC-CCCEEEEEeCCCCeEEEEECCCCcc--------------------cceeeecc-CCCCCceEEECCCCC
Confidence 5689999999 776 455566789999999987321 00122333 23556778887 77
Q ss_pred EEEEE-eecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee
Q 019117 252 FILSK-SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR 330 (346)
Q Consensus 252 ~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (346)
+++++ ..++.|.+||+.+++..........+............++|+||++ .+++++..++.|.+||+.+........
T Consensus 234 ~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~v~~~~~~~v~v~d~~~~~~~~~~~ 312 (331)
T 3u4y_A 234 TVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTET-KLFISANISRELKVFTISGKVVGYVAG 312 (331)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSS-EEEEEETTTTEEEEEETTSCEEEECTT
T ss_pred EEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCC-EEEEecCCCCcEEEEEecCCcccceec
Confidence 66555 4588899999988752100000000000011111225689999994 244566677899999998765333333
Q ss_pred eeeeEEEEEecCCC
Q 019117 331 LICFSLHVKYNPQS 344 (346)
Q Consensus 331 ~~~~~~~~~~spdg 344 (346)
+........++|++
T Consensus 313 ~~~~g~~~~~~~~~ 326 (331)
T 3u4y_A 313 IEANGGIAICHPDK 326 (331)
T ss_dssp CCCBSCEEECCCC-
T ss_pred ccccCCeEEECCcc
Confidence 33222235555654
No 140
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=2.4e-23 Score=190.05 Aligned_cols=267 Identities=12% Similarity=0.043 Sum_probs=181.6
Q ss_pred CCceEEEEEEeecCCCccEEEEEcC-C------cEEEEEeccCceeeeEeeeecCC----------C---------ccce
Q 019117 33 KRPLYAVVFNFIDSRYFNVFATVGG-N------RVTVYQCLEGGVIAALQSYVDED----------K---------EESF 86 (346)
Q Consensus 33 ~~~v~~~~~~p~~~~~~~~la~~~~-~------~v~i~~~~~~~~~~~~~~~~~~~----------~---------~~~v 86 (346)
...|.+++|+| +|++|++++. + .|.+||+.+++....+....... . ...+
T Consensus 36 ~~~~~~~~~Sp----dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 111 (741)
T 2ecf_A 36 GPTLMKPKVAP----DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGI 111 (741)
T ss_dssp CCCCEEEEECT----TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEES
T ss_pred CCCCCCceEec----CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCc
Confidence 55799999999 8899998876 4 39999998887655544211000 0 0224
Q ss_pred EEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc--eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeE
Q 019117 87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI 164 (346)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 164 (346)
..++| +|||+ +|++++. +.|.+||+.+++ ....+..|...+..++|+| +++.|+.++. +.|++||+.+++..
T Consensus 112 ~~~~~--SpDg~-~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP-DG~~la~~~~-~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 112 VDYQW--SPDAQ-RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP-KGGFVSFIRG-RNLWVIDLASGRQM 185 (741)
T ss_dssp CCCEE--CTTSS-EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT-TSSEEEEEET-TEEEEEETTTTEEE
T ss_pred ceeEE--CCCCC-EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC-CCCEEEEEeC-CcEEEEecCCCCEE
Confidence 44555 49999 8888885 999999999873 4455667888899999999 8888888874 68999999988766
Q ss_pred EEecccCCCCcc----------------eEEEEecCCCCcEEEEEecCC-------------------------------
Q 019117 165 LIFAGAGGHRNE----------------VLSVDFHPSDIYRIASCGMDN------------------------------- 197 (346)
Q Consensus 165 ~~~~~~~~~~~~----------------v~~~~~~~~~~~~l~s~~~d~------------------------------- 197 (346)
.... .+... +.+++|+| ++++|++++.|+
T Consensus 186 ~~~~---~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 186 QLTA---DGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp ECCC---CCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred Eecc---CCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 5443 22221 47899999 888888877665
Q ss_pred --eEEEEEccc-cceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEee-----cCeEEEEcCC
Q 019117 198 --TVKIWSMKE-FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSV-----DNEIVLWEPK 268 (346)
Q Consensus 198 --~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~-----d~~i~iwd~~ 268 (346)
.|.+||+.+ .+... +.....|...+..+.|. |++|+.++. +..|++||+.
T Consensus 262 ~~~l~~~d~~~~~~~~~---------------------~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~ 320 (741)
T 2ecf_A 262 QVKLGVISPAEQAQTQW---------------------IDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLA 320 (741)
T ss_dssp EEEEEEECSSTTCCCEE---------------------ECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETT
T ss_pred eeEEEEEECCCCCceEE---------------------ecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECC
Confidence 667777654 32100 00001355667777763 678887654 6789999998
Q ss_pred CCCCCCCCccccccccccCCCc----CeeEEEEeecCCcceEEEEcCCCcEEEEEcC-CCCcceeeeeeeeEEEE-EecC
Q 019117 269 MKEQSPGEGTADILQKYPVPEC----DIWFIKFSCDFHYNAAAIGNREGKIFVWELQ-SSPPVLIARLICFSLHV-KYNP 342 (346)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~-~~sp 342 (346)
+++ ....+..+.. .+..++|+||+ +++++++.||.++||.+. ++...........+..+ .|+|
T Consensus 321 ~g~---------~~~~~~~~~~~~~~~~~~~~~spdg--~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~ 389 (741)
T 2ecf_A 321 SNQ---------QRVLAHETSPTWVPLHNSLRFLDDG--SILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDE 389 (741)
T ss_dssp TCC---------EEEEEEEECSSCCCCCSCCEECTTS--CEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEET
T ss_pred CCc---------eEEEEEcCCCCcCCcCCceEECCCC--eEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeC
Confidence 876 2222222221 34678999999 688889999988888765 23322222223345666 5999
Q ss_pred CCC
Q 019117 343 QSV 345 (346)
Q Consensus 343 dg~ 345 (346)
||+
T Consensus 390 dg~ 392 (741)
T 2ecf_A 390 KAG 392 (741)
T ss_dssp TTT
T ss_pred CCC
Confidence 986
No 141
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=4.2e-23 Score=167.28 Aligned_cols=236 Identities=9% Similarity=-0.076 Sum_probs=167.1
Q ss_pred ecccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEecc-CceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee-
Q 019117 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLE-GGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG- 105 (346)
Q Consensus 28 ~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~- 105 (346)
.+..|...|.+++|+| ++++|++++.+.|.+||+.+ ++....... .+...+.+++|+ |+|+ +|++++
T Consensus 36 ~~~~~~~~v~~~~~sp----dg~~l~~~~~~~i~~~d~~~~~~~~~~~~~----~~~~~~~~~~~s--pdg~-~l~~~~~ 104 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSP----DGKYLLLNSEGLLYRLSLAGDPSPEKVDTG----FATICNNDHGIS--PDGA-LYAISDK 104 (297)
T ss_dssp EEEEESSCCEEEEECT----TSSEEEEEETTEEEEEESSSCCSCEECCCT----TCCCBCSCCEEC--TTSS-EEEEEEC
T ss_pred eeccCCcceEeeEECC----CCCEEEEEcCCeEEEEeCCCCCCceEeccc----cccccccceEEC--CCCC-EEEEEEe
Confidence 4556889999999999 78999999877799999988 665443322 123456666665 9999 888888
Q ss_pred -cCCeEEEEEc--cCcceeeeeccCCCceEEEEEeCCCCceEE-EeeCCCCEEEEecCC-CeeEEEecccCCCCcceEEE
Q 019117 106 -INGIIRVIDV--SNEKLHKSFVGHGDSINEIRTQPLKPSLVV-SASKDESVRLWNVQT-GICILIFAGAGGHRNEVLSV 180 (346)
Q Consensus 106 -~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~ 180 (346)
.++...||.+ .+++ ...+..+ ..+..++|+| +++.|+ +++.++.+.+|+++. +.....+. .+...+.++
T Consensus 105 ~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~ 178 (297)
T 2ojh_A 105 VEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDSGVETRLT---HGEGRNDGP 178 (297)
T ss_dssp TTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECT-TSSEEEEEEEETTEEEEEEEETTTCCEEECC---CSSSCEEEE
T ss_pred CCCCcceEEEEECCCCc-eEEeecC-CCccceEECC-CCCEEEEEECCCCceEEEEEECCCCcceEcc---cCCCccccc
Confidence 3345555554 4444 3344433 3489999999 666665 788899999998632 23334444 577899999
Q ss_pred EecCCCCcEEEEEe-cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe
Q 019117 181 DFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS 257 (346)
Q Consensus 181 ~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~ 257 (346)
+|+| ++..++.++ .++.+++|++... ......+..|...+.++.|+ +++|++++
T Consensus 179 ~~s~-dg~~l~~~~~~~~~~~i~~~~~~----------------------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 235 (297)
T 2ojh_A 179 DYSP-DGRWIYFNSSRTGQMQIWRVRVD----------------------GSSVERITDSAYGDWFPHPSPSGDKVVFVS 235 (297)
T ss_dssp EECT-TSSEEEEEECTTSSCEEEEEETT----------------------SSCEEECCCCSEEEEEEEECTTSSEEEEEE
T ss_pred eECC-CCCEEEEEecCCCCccEEEECCC----------------------CCCcEEEecCCcccCCeEECCCCCEEEEEE
Confidence 9999 777666554 5899999998741 12334555667778889998 78888887
Q ss_pred ec-----------CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC
Q 019117 258 VD-----------NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE 312 (346)
Q Consensus 258 ~d-----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d 312 (346)
.+ +.|.+||+.+++. ..+..+..|...+..++|+|++ ++|++++.+
T Consensus 236 ~~~~~~~~~~~~~~~l~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~spdg--~~l~~~~~~ 292 (297)
T 2ojh_A 236 YDADVFDHPRDLDVRVQLMDMDGGNV-------ETLFDLFGGQGTMNSPNWSPDG--DEFAYVRYF 292 (297)
T ss_dssp EETTCCSCCSSEEEEEEEEETTSCSC-------EEEEEEEESTTTSCSCCBCTTS--SEEEEEEEC
T ss_pred cCCCCCcccccCceEEEEEecCCCCc-------eeeeccCCCCcccccceECCCC--CEEEEEEec
Confidence 76 5799999987652 1234444667788999999999 567666654
No 142
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=6.3e-23 Score=169.55 Aligned_cols=245 Identities=9% Similarity=-0.021 Sum_probs=169.4
Q ss_pred cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCcc-ceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccC
Q 019117 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEE-SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH 127 (346)
Q Consensus 50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 127 (346)
++|++++.++ |.+||..+++.+..+... +.. .+..++|+ |+|+.+++++..++.|.+||+.+++.+..+...
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~~~~s--~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~ 75 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIA----DAGPTPMVPMVA--PGGRIAYATVNKSESLVKIDLVTGETLGRIDLS 75 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECT----TCTTCCCCEEEC--TTSSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcC----CCCCCccceEEc--CCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcC
Confidence 4677777776 999999888776665421 111 24446555 999735566677899999999999887766531
Q ss_pred -----CCceEEEEEeCCCCceEEEee------------CCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEE
Q 019117 128 -----GDSINEIRTQPLKPSLVVSAS------------KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI 190 (346)
Q Consensus 128 -----~~~v~~~~~~~~~~~~l~s~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 190 (346)
...+..++|+| +++.+++++ .++.|.+||+.+++.+..+. ....+.+++|+| +++++
T Consensus 76 ~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~s~-dg~~l 149 (337)
T 1pby_B 76 TPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE----APRQITMLAWAR-DGSKL 149 (337)
T ss_dssp BTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE----CCSSCCCEEECT-TSSCE
T ss_pred CcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe----CCCCcceeEECC-CCCEE
Confidence 22677899999 787887775 57999999999998888776 345678899999 77767
Q ss_pred EEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc--cceEEEEec--CCEEEEEe---------
Q 019117 191 ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS--NYVDCNRWL--GDFILSKS--------- 257 (346)
Q Consensus 191 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~--~~~l~~~~--------- 257 (346)
+++ ++.|.+||+.+.+..... ..+. ..+ .|+ +..++..+
T Consensus 150 ~~~--~~~i~~~d~~~~~~~~~~-----------------------~~~~~~~~~---~~s~dg~~l~~~~~~~~~~~~~ 201 (337)
T 1pby_B 150 YGL--GRDLHVMDPEAGTLVEDK-----------------------PIQSWEAET---YAQPDVLAVWNQHESSGVMATP 201 (337)
T ss_dssp EEE--SSSEEEEETTTTEEEEEE-----------------------CSTTTTTTT---BCCCBCCCCCCCCTTTTEEEEE
T ss_pred EEe--CCeEEEEECCCCcEeeee-----------------------eccccCCCc---eeCCCccEEeeeccCCCceeee
Confidence 766 688999999874432111 1000 000 111 22221111
Q ss_pred -----ecC----------eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117 258 -----VDN----------EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (346)
Q Consensus 258 -----~d~----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~ 322 (346)
.++ .|.+||+.+++. ....+..+...+..++|+||+ ++++++ ++.|++||+.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~--------~~~~~~~~~~~~~~~~~s~dg--~~l~~~--~~~v~~~d~~~ 269 (337)
T 1pby_B 202 FYTARKDIDPADPTAYRTGLLTMDLETGEM--------AMREVRIMDVFYFSTAVNPAK--TRAFGA--YNVLESFDLEK 269 (337)
T ss_dssp EEEEBTTSCTTSGGGEEEEEEEEETTTCCE--------EEEEEEECSSCEEEEEECTTS--SEEEEE--ESEEEEEETTT
T ss_pred eeccccccccccccccccceEEEeCCCCCc--------eEeecCCCCCceeeEEECCCC--CEEEEe--CCeEEEEECCC
Confidence 111 689999988762 122233344578889999999 567776 79999999999
Q ss_pred CCcceeeeeeeeEEEEEecCCCCC
Q 019117 323 SPPVLIARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~spdg~~ 346 (346)
++.+........+.+++|+|||++
T Consensus 270 ~~~~~~~~~~~~~~~~~~s~dg~~ 293 (337)
T 1pby_B 270 NASIKRVPLPHSYYSVNVSTDGST 293 (337)
T ss_dssp TEEEEEEECSSCCCEEEECTTSCE
T ss_pred CcCcceecCCCceeeEEECCCCCE
Confidence 887666666667889999999973
No 143
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=8.4e-23 Score=192.69 Aligned_cols=261 Identities=11% Similarity=-0.004 Sum_probs=192.8
Q ss_pred eecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEecc-CceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE-GGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (346)
Q Consensus 27 ~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 104 (346)
..+.+|...+.++.|++ + .++++++.++ +.||.+.. +.....+.. +. .+...+|+ |+|+ .|+.+
T Consensus 197 ~~l~~~~~~v~~~~~s~----d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~-----~~-~~~~~~~S--pDG~-~la~~ 262 (1045)
T 1k32_A 197 KKIVDMSTHVSSPVIVG----H-RIYFITDIDGFGQIYSTDLDGKDLRKHTS-----FT-DYYPRHLN--TDGR-RILFS 262 (1045)
T ss_dssp EEEECCSSCCEEEEEET----T-EEEEEECTTSSCEEEEEETTSCSCEECCC-----CC-SSCEEEEE--ESSS-CEEEE
T ss_pred EECcCCCCcccceEEeC----C-EEEEEEeccCceEEEEEeCCCCcceEecC-----CC-CcceeeEc--CCCC-EEEEE
Confidence 34578999999999998 4 6667777666 88888764 333333332 11 34445555 9998 77777
Q ss_pred ecCCeEEEEEccCcceeeeecc-----------CCCceEEEEEe-CCCCceEEEeeCCCCEEEEecCCCeeEEEecccCC
Q 019117 105 GINGIIRVIDVSNEKLHKSFVG-----------HGDSINEIRTQ-PLKPSLVVSASKDESVRLWNVQTGICILIFAGAGG 172 (346)
Q Consensus 105 ~~dg~i~iwd~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 172 (346)
.++.|.+|++...+ +..+.. |...+..++|+ | ++..|++++ ++.|.+|++..++... +. .
T Consensus 263 -~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~~-~~---~ 334 (1045)
T 1k32_A 263 -KGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVLK-VP---E 334 (1045)
T ss_dssp -ETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEEE-CS---C
T ss_pred -eCCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceEE-cc---C
Confidence 48999999985443 334443 34578999999 9 888888887 7899999998776544 43 4
Q ss_pred CCc-ceEEEEecCCCCcEEEEEecCCeEE-EEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-
Q 019117 173 HRN-EVLSVDFHPSDIYRIASCGMDNTVK-IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL- 249 (346)
Q Consensus 173 ~~~-~v~~~~~~~~~~~~l~s~~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 249 (346)
|.. .+..++|+ ++..++.++.++.+. +||+.... ...+..|...+..++|+
T Consensus 335 ~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~------------------------~~~l~~~~~~~~~~~~Sp 388 (1045)
T 1k32_A 335 PLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGK------------------------AEKFEENLGNVFAMGVDR 388 (1045)
T ss_dssp CSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCC------------------------EEECCCCCCSEEEEEECT
T ss_pred CCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCC------------------------ceEecCCccceeeeEECC
Confidence 666 89999999 667787777777888 88887621 22233677788999998
Q ss_pred -CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC----------CcEEEE
Q 019117 250 -GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE----------GKIFVW 318 (346)
Q Consensus 250 -~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d----------g~i~iw 318 (346)
|++|++++.++.|++||+.+++ .......|...+..++||||+ ++|++++.+ +.|++|
T Consensus 389 DG~~la~~~~~~~v~~~d~~tg~---------~~~~~~~~~~~v~~~~~SpDG--~~la~~~~~~~~~~~~~~~~~i~l~ 457 (1045)
T 1k32_A 389 NGKFAVVANDRFEIMTVDLETGK---------PTVIERSREAMITDFTISDNS--RFIAYGFPLKHGETDGYVMQAIHVY 457 (1045)
T ss_dssp TSSEEEEEETTSEEEEEETTTCC---------EEEEEECSSSCCCCEEECTTS--CEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred CCCEEEEECCCCeEEEEECCCCc---------eEEeccCCCCCccceEECCCC--CeEEEEecCccccccCCCCCeEEEE
Confidence 8899999999999999998876 344444677888999999999 678777664 489999
Q ss_pred EcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117 319 ELQSSPPVLIARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 319 d~~~~~~~~~~~~~~~~~~~~~spdg~~ 346 (346)
|+.+++..........+..++|+|||++
T Consensus 458 d~~~g~~~~l~~~~~~~~~~~~spdG~~ 485 (1045)
T 1k32_A 458 DMEGRKIFAATTENSHDYAPAFDADSKN 485 (1045)
T ss_dssp ETTTTEEEECSCSSSBEEEEEECTTSCE
T ss_pred ECCCCcEEEeeCCCcccCCceEcCCCCE
Confidence 9998864333333445778999999974
No 144
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.91 E-value=2.6e-23 Score=177.10 Aligned_cols=199 Identities=13% Similarity=0.137 Sum_probs=146.2
Q ss_pred ceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc----------eee-----eeccCCCceEEEEEeCCCCceEE----
Q 019117 85 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK----------LHK-----SFVGHGDSINEIRTQPLKPSLVV---- 145 (346)
Q Consensus 85 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----------~~~-----~~~~~~~~v~~~~~~~~~~~~l~---- 145 (346)
.+..++++ +++. ++++++.++ +++|+..... .+. ....+...|.+++|+| ++++|+
T Consensus 38 ~~n~lavs--~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~~~ 112 (434)
T 2oit_A 38 RSSLLAVS--NKYG-LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSACMM 112 (434)
T ss_dssp CCBCEEEE--TTTT-EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEEEE
T ss_pred CccEEEEe--cCCC-EEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEEEe
Confidence 34557766 7787 899998887 8998753210 010 1112567899999999 788888
Q ss_pred EeeCCCCEEEEecCCC--------eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceee
Q 019117 146 SASKDESVRLWNVQTG--------ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTW 217 (346)
Q Consensus 146 s~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 217 (346)
+++.|+.|++||++++ +.+..+....+|...|.+++|+|+++.+|++++.||+|++||++..
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~---------- 182 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET---------- 182 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS----------
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC----------
Confidence 8899999999998754 3333333333799999999999954899999999999999999982
Q ss_pred cCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCcccccccccc-------CC
Q 019117 218 TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP-------VP 288 (346)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-------~~ 288 (346)
........|...|.+++|+ |++|++|+.||+|++||++ ++ ....+. .|
T Consensus 183 -------------~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~---------~~~~~~~~~~~~~~~ 239 (434)
T 2oit_A 183 -------------VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ---------EKKVIPCPPFYESDH 239 (434)
T ss_dssp -------------EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC---------EEEEECCCTTCCTTS
T ss_pred -------------cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc---------ccccccCCcccCCCC
Confidence 2344455688999999999 8899999999999999998 32 111111 23
Q ss_pred CcCeeEEEEeecCCcceEEE-EcCCC------cEEEEEcCCC
Q 019117 289 ECDIWFIKFSCDFHYNAAAI-GNREG------KIFVWELQSS 323 (346)
Q Consensus 289 ~~~v~~~~~s~~~~~~~l~~-~~~dg------~i~iwd~~~~ 323 (346)
...|.+++|++++ .++++ ...|| .+++|++...
T Consensus 240 ~~~v~~v~w~~~~--~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 240 PVRVLDVLWIGTY--VFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CEEEEEEEEEETT--EEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ceeEEEEEEecCc--eEEEEEccCCCccCCCCceEEEEeccC
Confidence 3479999999987 45533 33443 3899999875
No 145
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=2.6e-22 Score=189.36 Aligned_cols=266 Identities=10% Similarity=0.011 Sum_probs=196.8
Q ss_pred CCCceEEEEEE-eecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCcc-ceEEEEEEEcCCCCcEEEEeecCCe
Q 019117 32 GKRPLYAVVFN-FIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEE-SFYTVSWACNVDGIPFLVAGGINGI 109 (346)
Q Consensus 32 h~~~v~~~~~~-p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~l~~~~~dg~ 109 (346)
|...+.+++|+ | +|+.||+++.+.+.+|+...+.... +. .+.. .+..++| + +|+ .|+.++.++.
T Consensus 294 ~~~~v~~~~~S~p----dG~~la~~~~~~i~~~~~~~~~~~~-~~-----~~~~~~~~~~~~--s-dg~-~l~~~s~~~~ 359 (1045)
T 1k32_A 294 SIPSKFAEDFSPL----DGDLIAFVSRGQAFIQDVSGTYVLK-VP-----EPLRIRYVRRGG--D-TKV-AFIHGTREGD 359 (1045)
T ss_dssp ECGGGGEEEEEEC----GGGCEEEEETTEEEEECTTSSBEEE-CS-----CCSCEEEEEECS--S-SEE-EEEEEETTEE
T ss_pred cccccceeeecCC----CCCEEEEEEcCEEEEEcCCCCceEE-cc-----CCCcceEEeeeE--c-CCC-eEEEEECCCc
Confidence 44578999999 9 7899999886669999987665432 21 1333 5555555 4 787 8888888888
Q ss_pred EE-EEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCc
Q 019117 110 IR-VIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY 188 (346)
Q Consensus 110 i~-iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 188 (346)
+. +|++.+++.... ..|...+..++|+| +++.|++++.++.|++||+.+++....+. +|...+.+++|+| +++
T Consensus 360 l~~~~d~~~~~~~~l-~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~---~~~~~v~~~~~Sp-DG~ 433 (1045)
T 1k32_A 360 FLGIYDYRTGKAEKF-EENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIER---SREAMITDFTISD-NSR 433 (1045)
T ss_dssp EEEEEETTTCCEEEC-CCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSSCCCCEEECT-TSC
T ss_pred eEEEEECCCCCceEe-cCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEecc---CCCCCccceEECC-CCC
Confidence 88 999887765443 37888999999999 89999999999999999999998887776 5888999999999 888
Q ss_pred EEEEEecCC----------eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEE
Q 019117 189 RIASCGMDN----------TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK 256 (346)
Q Consensus 189 ~l~s~~~d~----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~ 256 (346)
+|++++.++ .|++||+... . ...+..|...+..+.|+ |++|+.+
T Consensus 434 ~la~~~~~~~~~~~~~~~~~i~l~d~~~g-----------------------~-~~~l~~~~~~~~~~~~spdG~~l~~~ 489 (1045)
T 1k32_A 434 FIAYGFPLKHGETDGYVMQAIHVYDMEGR-----------------------K-IFAATTENSHDYAPAFDADSKNLYYL 489 (1045)
T ss_dssp EEEEEEEECSSTTCSCCEEEEEEEETTTT-----------------------E-EEECSCSSSBEEEEEECTTSCEEEEE
T ss_pred eEEEEecCccccccCCCCCeEEEEECCCC-----------------------c-EEEeeCCCcccCCceEcCCCCEEEEE
Confidence 888777654 8999999872 1 34555677778888998 8899999
Q ss_pred eecCeEEEEcCCCCCCCC----------------------------------CCccccccccccCCCcCeeEEEEeecCC
Q 019117 257 SVDNEIVLWEPKMKEQSP----------------------------------GEGTADILQKYPVPECDIWFIKFSCDFH 302 (346)
Q Consensus 257 ~~d~~i~iwd~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 302 (346)
+.++...+|+........ .......+..+..+.+.+..++++||+
T Consensus 490 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg- 568 (1045)
T 1k32_A 490 SYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESS- 568 (1045)
T ss_dssp ESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSE-
T ss_pred ecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCC-
Confidence 988888888754322100 000011223344566788999999998
Q ss_pred cceEEE-------------EcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117 303 YNAAAI-------------GNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 303 ~~~l~~-------------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~ 346 (346)
.++++ ......|++||+.+++..... ..+..++|||||++
T Consensus 569 -~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~---~~v~~~~~S~DG~~ 621 (1045)
T 1k32_A 569 -ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK---NNLTDLRLSADRKT 621 (1045)
T ss_dssp -EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE---EEEEEEEECTTSCE
T ss_pred -eEEEEecccCcccccccccCCCceEEEEECCCCcEEEee---cCcceEEECCCCCE
Confidence 55664 123557899999988743322 56788999999974
No 146
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=2.4e-23 Score=189.66 Aligned_cols=262 Identities=9% Similarity=-0.008 Sum_probs=171.7
Q ss_pred ceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC------
Q 019117 35 PLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN------ 107 (346)
Q Consensus 35 ~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d------ 107 (346)
.+.+++|+| +|+++++ +.++ |++||..+++....+..+.. ....+..++|+ |||+ +|++++.+
T Consensus 18 ~~~~~~~sp----dg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~--~~~~v~~~~~S--pDg~-~l~~~~~~~~~~~~ 87 (723)
T 1xfd_A 18 HDPEAKWIS----DTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKI--ESLRAIRYEIS--PDRE-YALFSYNVEPIYQH 87 (723)
T ss_dssp CCCCCCBSS----SSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTT--TTTTCSEEEEC--TTSS-EEEEEESCCCCSSS
T ss_pred cccccEEcC----CCcEEEE-eCCCCEEEEECCCCcEEEEeccccc--cccccceEEEC--CCCC-EEEEEecCccceee
Confidence 467899999 7787777 4555 99999998887655542110 00136666665 9999 88888764
Q ss_pred ---CeEEEEEccCccee--eeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCc-------
Q 019117 108 ---GIIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN------- 175 (346)
Q Consensus 108 ---g~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~------- 175 (346)
+.+.+||+.+++.. .....|...+..++|+| +++.|+.++. +.|++||+.+++...... .+..
T Consensus 88 ~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~---~~~~~~~~~g~ 162 (723)
T 1xfd_A 88 SYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVS---TGKEGVIYNGL 162 (723)
T ss_dssp CCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEEC---CCBTTTEEEEE
T ss_pred cceeeEEEEECCCCceEeccCCccccccccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEec---CCCCCceECcc
Confidence 78899999988752 22234555688999999 8889998886 799999999887766554 2332
Q ss_pred -----------ceEEEEecCCCCcEEEEEecCC----------------------------------eEEEEEcccccee
Q 019117 176 -----------EVLSVDFHPSDIYRIASCGMDN----------------------------------TVKIWSMKEFWTY 210 (346)
Q Consensus 176 -----------~v~~~~~~~~~~~~l~s~~~d~----------------------------------~i~iwd~~~~~~~ 210 (346)
.+.+++|+| +++.|++++.|+ .|.+||+.+..
T Consensus 163 ~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~-- 239 (723)
T 1xfd_A 163 SDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT-- 239 (723)
T ss_dssp CCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC--
T ss_pred cceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc--
Confidence 237899999 888888876543 45566655421
Q ss_pred eeeceeecCCCCCCCCccceeceEEEee------cccceEEEEec--CCEEEEEee----cCeEEEEcCCCCCCCCCCcc
Q 019117 211 VEKSFTWTDLPSKFPTKYVQFPVFIASV------HSNYVDCNRWL--GDFILSKSV----DNEIVLWEPKMKEQSPGEGT 278 (346)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~--~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~ 278 (346)
....+.. +...+..+.|+ |+++++... +..|++||+.+++
T Consensus 240 ---------------------~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~------- 291 (723)
T 1xfd_A 240 ---------------------HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV------- 291 (723)
T ss_dssp ---------------------CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC-------
T ss_pred ---------------------eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc-------
Confidence 1122222 25678889998 667766643 3679999998876
Q ss_pred ccccccccC-CCcCe----eEEEEeecCCcceEEE--EcCCC------cEEEEE-cCCCC---cceeeeeeeeEEE-EEe
Q 019117 279 ADILQKYPV-PECDI----WFIKFSCDFHYNAAAI--GNREG------KIFVWE-LQSSP---PVLIARLICFSLH-VKY 340 (346)
Q Consensus 279 ~~~~~~~~~-~~~~v----~~~~~s~~~~~~~l~~--~~~dg------~i~iwd-~~~~~---~~~~~~~~~~~~~-~~~ 340 (346)
....+.. +...+ ..++|+|||+ .|+. +..++ .|++|| ..+++ ..........+.. ++|
T Consensus 292 --~~~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~ 367 (723)
T 1xfd_A 292 --CTKKHEDESEAWLHRQNEEPVFSKDGR--KFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAY 367 (723)
T ss_dssp --EEEEEEEECSSCCCCCCCCCEECTTSC--SEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEE
T ss_pred --ceEEEEeccCCEEeccCCCceEcCCCC--eEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEE
Confidence 2222211 22223 3679999994 4443 55666 577788 44444 2222211222333 699
Q ss_pred cCCCCC
Q 019117 341 NPQSVY 346 (346)
Q Consensus 341 spdg~~ 346 (346)
||||++
T Consensus 368 spdg~~ 373 (723)
T 1xfd_A 368 DEKGNK 373 (723)
T ss_dssp ETTTTE
T ss_pred cCCCCE
Confidence 999973
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=9e-21 Score=157.39 Aligned_cols=258 Identities=12% Similarity=0.062 Sum_probs=163.8
Q ss_pred cCCCceEEEEEEeecCCCccEEEEEcC--Cc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee-c
Q 019117 31 EGKRPLYAVVFNFIDSRYFNVFATVGG--NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG-I 106 (346)
Q Consensus 31 ~h~~~v~~~~~~p~~~~~~~~la~~~~--~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~-~ 106 (346)
.+...+..++|+| ++++++++.. ++ |.+|++.++.. ..+.... .+...+..++|+ |+|+ +|++++ .
T Consensus 37 ~~~~~p~~~a~sp----dg~l~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~--~~~~~p~~~a~s--pdg~-~l~~~~~~ 106 (347)
T 3hfq_A 37 AATQNPTYLALSA----KDCLYSVDKEDDEGGIAAWQIDGQTA-HKLNTVV--APGTPPAYVAVD--EARQ-LVYSANYH 106 (347)
T ss_dssp EECSCCCCEEECT----TCEEEEEEEETTEEEEEEEEEETTEE-EEEEEEE--EESCCCSEEEEE--TTTT-EEEEEETT
T ss_pred eccCCcceEEEcc----CCeEEEEEecCCCceEEEEEecCCcE-EEeeeee--cCCCCCEEEEEC--CCCC-EEEEEeCC
Confidence 4556678899999 6775555442 34 99999966543 2222211 133445556665 9998 777777 7
Q ss_pred CCeEEEEEccC-c--ceeeeecc---------CCCceEEEEEeCCCCceEEEeeCCCCEEEEecC-CCeeEEEecccCCC
Q 019117 107 NGIIRVIDVSN-E--KLHKSFVG---------HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-TGICILIFAGAGGH 173 (346)
Q Consensus 107 dg~i~iwd~~~-~--~~~~~~~~---------~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~ 173 (346)
++.|.+|++.. + +.+..+.. +...+.+++|+| +++++++...++.|.+|++. +++...........
T Consensus 107 ~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~ 185 (347)
T 3hfq_A 107 KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEA 185 (347)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCT
T ss_pred CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCC
Confidence 89999999963 2 23333321 123488999999 66677777778899999998 45433221100123
Q ss_pred CcceEEEEecCCCCcE-EEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc------cceEEE
Q 019117 174 RNEVLSVDFHPSDIYR-IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS------NYVDCN 246 (346)
Q Consensus 174 ~~~v~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~ 246 (346)
...+..++|+| ++++ +++...++.|.+|++....... ..+....... ..+..+
T Consensus 186 g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~-------------------~~~~~~~~~~~~~~~~~~~~~i 245 (347)
T 3hfq_A 186 GFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQTGAF-------------------TQLGIVKTIPADYTAHNGAAAI 245 (347)
T ss_dssp TCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEE-------------------EEEEEEESSCTTCCSCCEEEEE
T ss_pred CCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCce-------------------EEeeeeeecCCCCCCCCcceeE
Confidence 34678899999 7774 4556678899999987511100 0111121111 347788
Q ss_pred Eec--CCEEE-EEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc-CCCcEEEE--Ec
Q 019117 247 RWL--GDFIL-SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-REGKIFVW--EL 320 (346)
Q Consensus 247 ~~~--~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~iw--d~ 320 (346)
+|+ |++|+ +...++.|.+|++.... ....+..+..+...+..++|+||+ ++|++++ .++.|.+| |.
T Consensus 246 ~~spdG~~l~v~~~~~~~v~v~~~~~~g------~~~~~~~~~~~~~~~~~~~~spdg--~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 246 RLSHDGHFLYVSNRGYNTLAVFAVTADG------HLTLIQQISTEGDFPRDFDLDPTE--AFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp EECTTSCEEEEEEETTTEEEEEEECGGG------CEEEEEEEECSSSCCCEEEECTTS--SEEEEEETTTTEEEEEEECT
T ss_pred EECCCCCEEEEEeCCCCEEEEEEECCCC------cEEEeEEEecCCCCcCeEEECCCC--CEEEEEEcCCCcEEEEEEeC
Confidence 888 77764 55568999999997421 112445555555678899999999 5666655 56899999 55
Q ss_pred CCCCcce
Q 019117 321 QSSPPVL 327 (346)
Q Consensus 321 ~~~~~~~ 327 (346)
.+++...
T Consensus 318 ~tg~l~~ 324 (347)
T 3hfq_A 318 TSGKLSL 324 (347)
T ss_dssp TTCCEEE
T ss_pred CCCeEEe
Confidence 5666543
No 148
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=7.8e-22 Score=162.98 Aligned_cols=246 Identities=10% Similarity=0.078 Sum_probs=172.1
Q ss_pred ceEEEEEEeecCCCccE-EEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee-------
Q 019117 35 PLYAVVFNFIDSRYFNV-FATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG------- 105 (346)
Q Consensus 35 ~v~~~~~~p~~~~~~~~-la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~------- 105 (346)
.+..++|+| +++. ++++..++ |.+||+.+++.+..+.......+...+..++|+ |+|+ +|+++.
T Consensus 35 ~~~~~~~s~----dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~dg~-~l~~~~~~~~~~~ 107 (337)
T 1pby_B 35 TPMVPMVAP----GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALS--PDGK-TLAIYESPVRLEL 107 (337)
T ss_dssp CCCCEEECT----TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEEC--TTSS-EEEEEEEEEEECS
T ss_pred CccceEEcC----CCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEEC--CCCC-EEEEEeccccccc
Confidence 478899999 6654 45555555 999999888876655521100011234445554 9998 777775
Q ss_pred -----cCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEE
Q 019117 106 -----INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180 (346)
Q Consensus 106 -----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 180 (346)
.++.|.+||+.+++.+..+.. ...+..++|+| ++++|+++ ++.|.+||+.+++.+..+.. +. ....+
T Consensus 108 ~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~---~~-~~~~~ 179 (337)
T 1pby_B 108 THFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPI---QS-WEAET 179 (337)
T ss_dssp SCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECS---TT-TTTTT
T ss_pred ccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeec---cc-cCCCc
Confidence 579999999999888777764 45678899999 77777777 68899999999998877762 21 01123
Q ss_pred EecCCCCcEEEEEe-cCC-----------------------eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE
Q 019117 181 DFHPSDIYRIASCG-MDN-----------------------TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 236 (346)
Q Consensus 181 ~~~~~~~~~l~s~~-~d~-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (346)
.|+| ++..++..+ .++ .|.+||+.+.+. .....
T Consensus 180 ~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~----------------------~~~~~ 236 (337)
T 1pby_B 180 YAQP-DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM----------------------AMREV 236 (337)
T ss_dssp BCCC-BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE----------------------EEEEE
T ss_pred eeCC-CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc----------------------eEeec
Confidence 6788 555444333 233 467888877321 12234
Q ss_pred eecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCc
Q 019117 237 SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK 314 (346)
Q Consensus 237 ~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~ 314 (346)
..+...+.++.|+ +++++++ ++.|.+||+.+++ .+..+..+ ..+.+++|+|++ ++|++++.++.
T Consensus 237 ~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~---------~~~~~~~~-~~~~~~~~s~dg--~~l~~~~~~~~ 302 (337)
T 1pby_B 237 RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA---------SIKRVPLP-HSYYSVNVSTDG--STVWLGGALGD 302 (337)
T ss_dssp EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE---------EEEEEECS-SCCCEEEECTTS--CEEEEESBSSE
T ss_pred CCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCc---------CcceecCC-CceeeEEECCCC--CEEEEEcCCCc
Confidence 4566678888998 7788877 7999999998765 33333332 467899999999 67888888999
Q ss_pred EEEEEcCCCCcceeeeee
Q 019117 315 IFVWELQSSPPVLIARLI 332 (346)
Q Consensus 315 i~iwd~~~~~~~~~~~~~ 332 (346)
|++||+.+++.+..+...
T Consensus 303 i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 303 LAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp EEEEETTTCCEEEEEECG
T ss_pred EEEEECcCCcEEEEEEcC
Confidence 999999999876665554
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.90 E-value=3.3e-22 Score=177.49 Aligned_cols=251 Identities=12% Similarity=0.039 Sum_probs=175.5
Q ss_pred CCCceEEEEEEeecCCCccEEEEEcC-Cc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec---
Q 019117 32 GKRPLYAVVFNFIDSRYFNVFATVGG-NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI--- 106 (346)
Q Consensus 32 h~~~v~~~~~~p~~~~~~~~la~~~~-~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~--- 106 (346)
+..+|++++|+| ||+.||+++. ++ +.||++..+.. ..+.. .+...+..++|+ || + ++++++.
T Consensus 20 ~~~~~~~~~~~~----DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~----~~~~~~~~~~~s--pd-~-~l~~~~~~~g 86 (582)
T 3o4h_A 20 IAVEKYSLQGVV----DGDKLLVVGFSEGSVNAYLYDGGET-VKLNR----EPINSVLDPHYG--VG-R-VILVRDVSKG 86 (582)
T ss_dssp HHSCEEEEEEEE----TTTEEEEEEEETTEEEEEEEETTEE-EECCS----SCCSEECEECTT--CS-E-EEEEEECSTT
T ss_pred hccchheeecCC----CCCeEEEEEccCCceeEEEEcCCCc-Eeeec----ccccccccccCC--CC-e-EEEEeccCCC
Confidence 356799999999 8899998876 66 99999855443 33321 122456666665 88 6 8887765
Q ss_pred CCeEEEEEccC---cceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEec
Q 019117 107 NGIIRVIDVSN---EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 183 (346)
Q Consensus 107 dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 183 (346)
+....+|.+.. +... .+... ..+...+|+|++...+++.+.++.+.+||+.+++...... +.. .+++|+
T Consensus 87 ~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~----~~~--~~~~~s 158 (582)
T 3o4h_A 87 AEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR----LPG--FGFVSD 158 (582)
T ss_dssp SCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE----ESS--CEEEEE
T ss_pred CcceEEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec----CCC--ceEEEC
Confidence 45566765543 2222 33322 2344668888433444444445556699999887665554 222 789999
Q ss_pred CCCCcEEEEEecC----CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe
Q 019117 184 PSDIYRIASCGMD----NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS 257 (346)
Q Consensus 184 ~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~ 257 (346)
| +++++++++.+ +.|.+||+.+.+ ...+..|...+..++|+ |+.|+++.
T Consensus 159 p-DG~~la~~~~~~~~~~~i~~~d~~~g~------------------------~~~l~~~~~~~~~~~~SpDG~~l~~~~ 213 (582)
T 3o4h_A 159 I-RGDLIAGLGFFGGGRVSLFTSNLSSGG------------------------LRVFDSGEGSFSSASISPGMKVTAGLE 213 (582)
T ss_dssp E-ETTEEEEEEEEETTEEEEEEEETTTCC------------------------CEEECCSSCEEEEEEECTTSCEEEEEE
T ss_pred C-CCCEEEEEEEcCCCCeEEEEEcCCCCC------------------------ceEeecCCCccccceECCCCCEEEEcc
Confidence 9 89999988776 789999988722 23566788888999998 88999888
Q ss_pred ecC--eEEEEcCCCCCCCCCCccccccccccCCCcCeeEEE--------EeecCCcceEEEEcCCCcEEEEEcCCCCcce
Q 019117 258 VDN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIK--------FSCDFHYNAAAIGNREGKIFVWELQSSPPVL 327 (346)
Q Consensus 258 ~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 327 (346)
.++ .|++||+.+++ .. .+..+...+..++ |+||+ .++++++.|+.+++|++ ++...
T Consensus 214 ~~~~~~i~~~d~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~spdg--~~~~~~~~~g~~~l~~~--g~~~~ 279 (582)
T 3o4h_A 214 TAREARLVTVDPRDGS---------VE-DLELPSKDFSSYRPTAITWLGYLPDG--RLAVVARREGRSAVFID--GERVE 279 (582)
T ss_dssp CSSCEEEEEECTTTCC---------EE-ECCCSCSHHHHHCCSEEEEEEECTTS--CEEEEEEETTEEEEEET--TEEEC
T ss_pred CCCeeEEEEEcCCCCc---------EE-EccCCCcChhhhhhccccceeEcCCC--cEEEEEEcCCcEEEEEE--CCeec
Confidence 888 89999998876 22 4445555555566 99999 68999999999999999 54332
Q ss_pred eeeeeeeEEEEEecCCCC
Q 019117 328 IARLICFSLHVKYNPQSV 345 (346)
Q Consensus 328 ~~~~~~~~~~~~~spdg~ 345 (346)
...+.+.+++|+ ||+
T Consensus 280 --~~~~~v~~~~~s-dg~ 294 (582)
T 3o4h_A 280 --APQGNHGRVVLW-RGK 294 (582)
T ss_dssp --CCSSEEEEEEEE-TTE
T ss_pred --cCCCceEEEEec-CCE
Confidence 334567788888 775
No 150
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=7.3e-22 Score=179.87 Aligned_cols=276 Identities=8% Similarity=-0.027 Sum_probs=177.2
Q ss_pred eeecccCCC---ceEEEEEEeecCCCccEEEEEcCC---------c-EEEEEeccCceeeeEeeeecCCCccceEEEEEE
Q 019117 26 TNKLQEGKR---PLYAVVFNFIDSRYFNVFATVGGN---------R-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWA 92 (346)
Q Consensus 26 ~~~~~~h~~---~v~~~~~~p~~~~~~~~la~~~~~---------~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 92 (346)
...+.+|.. .|.+++||| +|++||+++.+ + +.+||+.+++. ..+... ..+...+..++|+
T Consensus 50 ~~~~~~~~~~~~~v~~~~~Sp----Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~--~~~~~~~~~~~~S 122 (723)
T 1xfd_A 50 TVLIEGKKIESLRAIRYEISP----DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPP--EVSNAKLQYAGWG 122 (723)
T ss_dssp EEEECTTTTTTTTCSEEEECT----TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCT--TCCSCCCSBCCBC
T ss_pred EEEeccccccccccceEEECC----CCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCC--ccccccccccEEC
Confidence 344455554 499999999 88999988763 3 88999888765 223221 1233335555555
Q ss_pred EcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCce------------------EEEEEeCCCCceEEEeeCCC---
Q 019117 93 CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSI------------------NEIRTQPLKPSLVVSASKDE--- 151 (346)
Q Consensus 93 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v------------------~~~~~~~~~~~~l~s~~~d~--- 151 (346)
|||+ .|+.++. +.|.+||+.+++.......+...+ .+++|+| +++.|++++.|+
T Consensus 123 --PdG~-~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~ 197 (723)
T 1xfd_A 123 --PKGQ-QLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRV 197 (723)
T ss_dssp --SSTT-CEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTS
T ss_pred --CCCC-EEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCcc
Confidence 9999 8888875 799999999888766655444333 7899999 888888877543
Q ss_pred -------------------------------CEEEEecCCCeeEEEeccc---CCCCcceEEEEecCCCCcEEEEEec--
Q 019117 152 -------------------------------SVRLWNVQTGICILIFAGA---GGHRNEVLSVDFHPSDIYRIASCGM-- 195 (346)
Q Consensus 152 -------------------------------~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~-- 195 (346)
.|++||+.+++....+... ..+...+..++|+| +++++++...
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~ 276 (723)
T 1xfd_A 198 PIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRA 276 (723)
T ss_dssp CEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETT
T ss_pred ceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCC
Confidence 7999999888765555410 01367889999999 8888866643
Q ss_pred --CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe-ecccce----EEEEec--CCEEEE--EeecC----
Q 019117 196 --DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS-VHSNYV----DCNRWL--GDFILS--KSVDN---- 260 (346)
Q Consensus 196 --d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i----~~~~~~--~~~l~~--~~~d~---- 260 (346)
+..|.+||+.+.+ ...... .+...+ ..+.|+ |+.|+. +..++
T Consensus 277 ~~~~~i~~~d~~~g~-----------------------~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 333 (723)
T 1xfd_A 277 QNVSILTLCDATTGV-----------------------CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGK 333 (723)
T ss_dssp SCEEEEEEEETTTCC-----------------------EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSC
T ss_pred CCeEEEEEEeCCCCc-----------------------ceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcc
Confidence 3579999998732 122222 223333 266777 665554 44566
Q ss_pred --eEEEEcC-CCCCCCCCCccccccccccCCCcCeeE-EEEeecCCcceEEEE-cCC--CcEEEEEcCCCCc--ceeee-
Q 019117 261 --EIVLWEP-KMKEQSPGEGTADILQKYPVPECDIWF-IKFSCDFHYNAAAIG-NRE--GKIFVWELQSSPP--VLIAR- 330 (346)
Q Consensus 261 --~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~~~l~~~-~~d--g~i~iwd~~~~~~--~~~~~- 330 (346)
.|.+||+ ..++. .....+..+...+.. ++|+||+ +.|+.. ..+ +.+++|++..... .....
T Consensus 334 ~~~l~~~d~~~~~~~-------~~~~~l~~~~~~~~~~~~~spdg--~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 404 (723)
T 1xfd_A 334 FYHITVSSSQPNSSN-------DNIQSITSGDWDVTKILAYDEKG--NKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSC 404 (723)
T ss_dssp EEEEEEECSSCCSSS-------CCCCBSCCSSSCEEEEEEEETTT--TEEEEEESSSCTTCCEEEEECSSTTCCCBCSST
T ss_pred eeEEEEEeccCCCCc-------cceeEeecCCeEEEeeeEEcCCC--CEEEEEEcCCCCcceEEEEEeCCCCCCcceecc
Confidence 5667773 33320 002233322334444 6999999 556544 444 7899999875321 22111
Q ss_pred ---eeeeEEEEEecCCCCC
Q 019117 331 ---LICFSLHVKYNPQSVY 346 (346)
Q Consensus 331 ---~~~~~~~~~~spdg~~ 346 (346)
....+..++|||||++
T Consensus 405 ~~~~~~~~~~~~~spdg~~ 423 (723)
T 1xfd_A 405 DLVENCTYFSASFSHSMDF 423 (723)
T ss_dssp TSSSSCCCCEEEECTTSSE
T ss_pred cccCCCCeEEEEECCCCCE
Confidence 2344678999999974
No 151
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.90 E-value=1e-21 Score=163.17 Aligned_cols=261 Identities=11% Similarity=0.021 Sum_probs=168.8
Q ss_pred EEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccC
Q 019117 39 VVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN 117 (346)
Q Consensus 39 ~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 117 (346)
+++++ ++.++++++.++ |.+||..+++....+... ....+..++|+ |+|+.++++...++.|.+||+.+
T Consensus 5 ~~~~~----~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~~~s--~dg~~~~v~~~~~~~i~~~d~~t 74 (349)
T 1jmx_B 5 PALKA----GHEYMIVTNYPNNLHVVDVASDTVYKSCVMP----DKFGPGTAMMA--PDNRTAYVLNNHYGDIYGIDLDT 74 (349)
T ss_dssp CCCCT----TCEEEEEEETTTEEEEEETTTTEEEEEEECS----SCCSSCEEEEC--TTSSEEEEEETTTTEEEEEETTT
T ss_pred ccccC----CCEEEEEeCCCCeEEEEECCCCcEEEEEecC----CCCCCceeEEC--CCCCEEEEEeCCCCcEEEEeCCC
Confidence 34555 567888887777 999999888776666531 11134445554 99983445666789999999999
Q ss_pred cceeeeeccCC------CceEEEEEeCCCCceEEEeeCC------------CCEEEEecCCCee---EEEecccCCCCcc
Q 019117 118 EKLHKSFVGHG------DSINEIRTQPLKPSLVVSASKD------------ESVRLWNVQTGIC---ILIFAGAGGHRNE 176 (346)
Q Consensus 118 ~~~~~~~~~~~------~~v~~~~~~~~~~~~l~s~~~d------------~~i~iwd~~~~~~---~~~~~~~~~~~~~ 176 (346)
++.+..+..+. ..+..++|+| +++++++++.+ +.|.+||+.+++. +..+. +...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~~~ 149 (349)
T 1jmx_B 75 CKNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP----MPRQ 149 (349)
T ss_dssp TEEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE----CCSS
T ss_pred CcEEEEEEcccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc----CCCc
Confidence 98877665322 3378999999 78888888765 8999999988543 33343 4446
Q ss_pred eEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCC------------CCCCcc----------------
Q 019117 177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPS------------KFPTKY---------------- 228 (346)
Q Consensus 177 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~------------~~~~~~---------------- 228 (346)
+.+++|+| +++ +++++ +.|.+||+.+.+............+. ......
T Consensus 150 ~~~~~~s~-dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 225 (349)
T 1jmx_B 150 VYLMRAAD-DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQD 225 (349)
T ss_dssp CCCEEECT-TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC------
T ss_pred ccceeECC-CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCC
Confidence 88999999 777 55544 34999999875432221111000000 000000
Q ss_pred -----------------ceeceEEEeecccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCC
Q 019117 229 -----------------VQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP 288 (346)
Q Consensus 229 -----------------~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 288 (346)
..........+...+..+.++ +++++++ ++.|.+||+.+++ .+..+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~---------~~~~~~~- 293 (349)
T 1jmx_B 226 PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK---------LIKAANL- 293 (349)
T ss_dssp -CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTE---------EEEEEEC-
T ss_pred ccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCe---------EEEEEcC-
Confidence 000011111222345556654 5677777 8899999998875 3333332
Q ss_pred CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee
Q 019117 289 ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI 332 (346)
Q Consensus 289 ~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 332 (346)
...+.+++|+|++ ++|++++.++.|++||+.+++.+..+...
T Consensus 294 ~~~~~~~~~s~dg--~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 294 DHTYYCVAFDKKG--DKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp SSCCCEEEECSSS--SCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred CCCccceEECCCC--CEEEEecCCCeEEEEeccccceeeeeecC
Confidence 2357789999999 56777888999999999998766665554
No 152
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.88 E-value=1.9e-20 Score=155.75 Aligned_cols=222 Identities=10% Similarity=0.057 Sum_probs=161.5
Q ss_pred cceEEEEEEEcCCCCcEEEEeec-------CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCc-eEEEeeCCCCEEE
Q 019117 84 ESFYTVSWACNVDGIPFLVAGGI-------NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS-LVVSASKDESVRL 155 (346)
Q Consensus 84 ~~v~~~~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~i 155 (346)
..+..++++ |+++ ++++++. ++.|.+||..+++.+..+.. ...+..++|+| +++ ++++...++.|.+
T Consensus 41 ~~~~~~~~s--~dg~-~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~v~~~~~~~v~~ 115 (353)
T 3vgz_A 41 KGAYEMAYS--QQEN-ALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINN-TTQTLWFGNTVNSAVTA 115 (353)
T ss_dssp SSEEEEEEE--TTTT-EEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEET-TTTEEEEEETTTTEEEE
T ss_pred cCccceEEC--CCCC-EEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECC-CCCEEEEEecCCCEEEE
Confidence 345556665 9998 6666663 56899999999998888774 34578999999 666 5566666899999
Q ss_pred EecCCCeeEEEecccCCC------CcceEEEEecCCCCcEEEEEe--cCCeEEEEEccccceeeeeceeecCCCCCCCCc
Q 019117 156 WNVQTGICILIFAGAGGH------RNEVLSVDFHPSDIYRIASCG--MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK 227 (346)
Q Consensus 156 wd~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 227 (346)
||+.+++.+..+...... ...+.+++|+| +++.+++++ .++.|.+||+.+.+
T Consensus 116 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~------------------- 175 (353)
T 3vgz_A 116 IDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIK------------------- 175 (353)
T ss_dssp EETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTE-------------------
T ss_pred EeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCc-------------------
Confidence 999999988887631111 01278999999 666666554 47899999998732
Q ss_pred cceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccC----CCcCeeEEEEeecC
Q 019117 228 YVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV----PECDIWFIKFSCDF 301 (346)
Q Consensus 228 ~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~ 301 (346)
....+..+...+.++.|+ ++++++++.++.|.+||+.+++ .+..+.. +...+..++|+|++
T Consensus 176 ----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~s~dg 242 (353)
T 3vgz_A 176 ----LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNK---------ILSRKKLLDDGKEHFFINISLDTAR 242 (353)
T ss_dssp ----EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE---------EEEEEECCCSSSCCCEEEEEEETTT
T ss_pred ----eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCe---------EEEEEEcCCCCCCcccceEEECCCC
Confidence 233343344456677776 7889999999999999998876 3333322 45567889999999
Q ss_pred CcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCC
Q 019117 302 HYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSV 345 (346)
Q Consensus 302 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~ 345 (346)
+ .++++...++.|.+||+.+++.+....... ...++|+|||+
T Consensus 243 ~-~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~s~dg~ 284 (353)
T 3vgz_A 243 Q-RAFITDSKAAEVLVVDTRNGNILAKVAAPE-SLAVLFNPARN 284 (353)
T ss_dssp T-EEEEEESSSSEEEEEETTTCCEEEEEECSS-CCCEEEETTTT
T ss_pred C-EEEEEeCCCCEEEEEECCCCcEEEEEEcCC-CceEEECCCCC
Confidence 4 244555566999999999998766666544 36799999997
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=1e-19 Score=151.07 Aligned_cols=252 Identities=10% Similarity=0.067 Sum_probs=157.7
Q ss_pred cEEEEEeccC-ceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec--CCeEEEEEccCcc--eeeeeccCCCceEE
Q 019117 59 RVTVYQCLEG-GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI--NGIIRVIDVSNEK--LHKSFVGHGDSINE 133 (346)
Q Consensus 59 ~v~i~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~--~~~~~~~~~~~v~~ 133 (346)
+|.+|++... ..+..+.... +...+..++|+ |+|+ +++++.. ++.|.+|++.+++ .+..+..+...+..
T Consensus 17 ~i~v~~~d~~tg~~~~~~~~~---~~~~p~~~a~s--pdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~ 90 (347)
T 3hfq_A 17 GIYQGTLDTTAKTLTNDGLLA---ATQNPTYLALS--AKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAY 90 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEEE---ECSCCCCEEEC--TTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSE
T ss_pred CEEEEEEcCCCCeEEEeeeee---ccCCcceEEEc--cCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEE
Confidence 3888877642 2222222111 22334445555 9998 6655543 6899999997765 44454557778899
Q ss_pred EEEeCCCCceEEEee-CCCCEEEEecCC-C--eeEEEecccC------CCCcceEEEEecCCCCcEEEEEecCCeEEEEE
Q 019117 134 IRTQPLKPSLVVSAS-KDESVRLWNVQT-G--ICILIFAGAG------GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 203 (346)
Q Consensus 134 ~~~~~~~~~~l~s~~-~d~~i~iwd~~~-~--~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 203 (346)
++|+| ++++|++++ .++.|.+|++.. + +.+..+.... .....+.+++|+| +++++++...++.|.+|+
T Consensus 91 ~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~ 168 (347)
T 3hfq_A 91 VAVDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYN 168 (347)
T ss_dssp EEEET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEE
T ss_pred EEECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEE
Confidence 99999 788777776 789999999963 2 3333332100 0123588999999 777777777788999999
Q ss_pred ccc-cceeeeeceeecCCCCCCCCccceeceEEEeec-ccceEEEEec--CCEEEE-EeecCeEEEEcCCCCCCCCCCcc
Q 019117 204 MKE-FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH-SNYVDCNRWL--GDFILS-KSVDNEIVLWEPKMKEQSPGEGT 278 (346)
Q Consensus 204 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~--~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~ 278 (346)
+.. ... ........+ ......++|+ |+++++ ...++.|.+|++..... .
T Consensus 169 ~~~~g~~---------------------~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g-----~ 222 (347)
T 3hfq_A 169 VSDAGQL---------------------SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG-----A 222 (347)
T ss_dssp ECTTSCE---------------------EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT-----E
T ss_pred ECCCCcE---------------------EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC-----c
Confidence 983 111 011111222 2246678888 775555 56689999999875210 0
Q ss_pred ccccccccCC------CcCeeEEEEeecCCcceE-EEEcCCCcEEEEEcCC-CCcceeeeeee---eEEEEEecCCCCC
Q 019117 279 ADILQKYPVP------ECDIWFIKFSCDFHYNAA-AIGNREGKIFVWELQS-SPPVLIARLIC---FSLHVKYNPQSVY 346 (346)
Q Consensus 279 ~~~~~~~~~~------~~~v~~~~~s~~~~~~~l-~~~~~dg~i~iwd~~~-~~~~~~~~~~~---~~~~~~~spdg~~ 346 (346)
...+..+... ...+..++|+||+ ++| ++...++.|.+|++.. +.......+.. .+..++|+|||++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~i~~spdG--~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~ 299 (347)
T 3hfq_A 223 FTQLGIVKTIPADYTAHNGAAAIRLSHDG--HFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAF 299 (347)
T ss_dssp EEEEEEEESSCTTCCSCCEEEEEEECTTS--CEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSE
T ss_pred eEEeeeeeecCCCCCCCCcceeEEECCCC--CEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCE
Confidence 0111121111 1358889999999 555 6666789999999973 33333333332 4788999999974
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=3.8e-19 Score=148.43 Aligned_cols=269 Identities=10% Similarity=0.038 Sum_probs=167.4
Q ss_pred CCCceEEEEEEeecCCCccEEEEEcCC-----cEEEEEeccC-ceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117 32 GKRPLYAVVFNFIDSRYFNVFATVGGN-----RVTVYQCLEG-GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (346)
Q Consensus 32 h~~~v~~~~~~p~~~~~~~~la~~~~~-----~v~i~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 105 (346)
+...+..++|+| ++++|++++.+ .|.+|++... ..+..+..... +......+++ +++ +|++++
T Consensus 48 ~~~~p~~l~~sp----dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~--~~~~p~~~~~----dg~-~l~~~~ 116 (361)
T 3scy_A 48 EVANPSYLIPSA----DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKT--MGADPCYLTT----NGK-NIVTAN 116 (361)
T ss_dssp ECSCCCSEEECT----TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEEC--SSSCEEEEEE----CSS-EEEEEE
T ss_pred cCCCCceEEECC----CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEecc--CCCCcEEEEE----CCC-EEEEEE
Confidence 667778899999 78888888774 4999998764 33343333221 2233333443 677 555555
Q ss_pred -cCCeEEEEEccCcceeeee------cc--------CCCceEEEEEeCCCCceEE-EeeCCCCEEEEecCCCee------
Q 019117 106 -INGIIRVIDVSNEKLHKSF------VG--------HGDSINEIRTQPLKPSLVV-SASKDESVRLWNVQTGIC------ 163 (346)
Q Consensus 106 -~dg~i~iwd~~~~~~~~~~------~~--------~~~~v~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~------ 163 (346)
.++.|.+|++.....+..+ .+ +...+.+++|+| ++++++ +...++.|.+|++.....
T Consensus 117 ~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~ 195 (361)
T 3scy_A 117 YSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEK 195 (361)
T ss_dssp TTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCC
T ss_pred CCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccc
Confidence 6889999999754332211 11 123458899999 777554 445588999999875431
Q ss_pred E------EEecccCCCCcceEEEEecCCCCcEEEEEe-cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE
Q 019117 164 I------LIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 236 (346)
Q Consensus 164 ~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (346)
+ ..... .+...+..++|+| +++++++++ .++.|.+||+......... .+...
T Consensus 196 l~~~~~~~~~~~--~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~------------------~~~~~ 254 (361)
T 3scy_A 196 FLTKGTPEAFKV--APGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQ------------------TVAAD 254 (361)
T ss_dssp CEEEEEEEEEEC--CTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEE------------------EEESC
T ss_pred eeecccccceec--CCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeE------------------EEecC
Confidence 1 11111 3456788999999 777666665 6899999999853211110 01111
Q ss_pred eecccceEEEEec--CCEEEEEeec--CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc-C
Q 019117 237 SVHSNYVDCNRWL--GDFILSKSVD--NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-R 311 (346)
Q Consensus 237 ~~~~~~i~~~~~~--~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~-~ 311 (346)
..+......++|+ |++|+++..+ +.|.+|++..... ....+..+.. ...+..++|+||+ ++|++++ .
T Consensus 255 ~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g-----~~~~~~~~~~-g~~~~~~~~spdg--~~l~~~~~~ 326 (361)
T 3scy_A 255 TVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNG-----TLTKVGYQLT-GIHPRNFIITPNG--KYLLVACRD 326 (361)
T ss_dssp SSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTC-----CEEEEEEEEC-SSCCCEEEECTTS--CEEEEEETT
T ss_pred CCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCC-----cEEEeeEecC-CCCCceEEECCCC--CEEEEEECC
Confidence 1223445788887 7788666654 8999999963210 1113333333 4567899999999 5666655 7
Q ss_pred CCcEEEEE--cCCCCcceee-e-eeeeEEEEEec
Q 019117 312 EGKIFVWE--LQSSPPVLIA-R-LICFSLHVKYN 341 (346)
Q Consensus 312 dg~i~iwd--~~~~~~~~~~-~-~~~~~~~~~~s 341 (346)
++.|.+|+ .++++..... . ....+.|+.|.
T Consensus 327 ~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 327 TNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp TTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 78999964 4566644332 1 12347888886
No 155
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=3.4e-20 Score=168.43 Aligned_cols=252 Identities=12% Similarity=0.054 Sum_probs=169.8
Q ss_pred cccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEecc-----CceeeeEeeeecC---------CCccceEEEEEEEc
Q 019117 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLE-----GGVIAALQSYVDE---------DKEESFYTVSWACN 94 (346)
Q Consensus 29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~-----~~~~~~~~~~~~~---------~~~~~v~~~~~~~~ 94 (346)
+..+...+.+++|+| +|+.||++.++.|.+|++.+ ++........... .+...+..+.|+
T Consensus 116 l~~~~~~~~~~~~Sp----dG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~S-- 189 (706)
T 2z3z_A 116 LFDTNEETASLDFSP----VGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWS-- 189 (706)
T ss_dssp EECCTTCCTTCEECT----TSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEEC--
T ss_pred ccCCcccccCCcCCC----CCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEEC--
Confidence 345667788999999 78999998666699999987 6654332211000 000113445555
Q ss_pred CCCCcEEEEee---------------------------------cCCeEEEEEccCcceeeeec--cCCCceEEEEEeCC
Q 019117 95 VDGIPFLVAGG---------------------------------INGIIRVIDVSNEKLHKSFV--GHGDSINEIRTQPL 139 (346)
Q Consensus 95 ~~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~ 139 (346)
|||+ +|++++ .+..|.+||+.+++...... .|...+..++|+|
T Consensus 190 pDg~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp- 267 (706)
T 2z3z_A 190 PKGS-CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSP- 267 (706)
T ss_dssp TTSS-EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECT-
T ss_pred CCCC-EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEEC-
Confidence 9999 888887 44689999999887654432 4677899999999
Q ss_pred CCceEEEeeCCC-----CEEEEecCCCeeEEEecccCCCC---cceEEEEecC-CCCcEEEEEecCCeEEEEEcccccee
Q 019117 140 KPSLVVSASKDE-----SVRLWNVQTGICILIFAGAGGHR---NEVLSVDFHP-SDIYRIASCGMDNTVKIWSMKEFWTY 210 (346)
Q Consensus 140 ~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~---~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~ 210 (346)
+++.|++++.++ .|.+||+.+++....+... .+. ..+..++|+| .++++++++..|+.+++|++...
T Consensus 268 dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~--- 343 (706)
T 2z3z_A 268 DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE-TDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT--- 343 (706)
T ss_dssp TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE-ECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETT---
T ss_pred CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc-cCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECC---
Confidence 888888877665 8999999988433333210 122 2346789997 25568889999999999988631
Q ss_pred eeeceeecCCCCCCCCccceeceEEEeecccceEE-EEec--CCEEEEEee-cC----eEEEEcCCCCCCCCCCcccccc
Q 019117 211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC-NRWL--GDFILSKSV-DN----EIVLWEPKMKEQSPGEGTADIL 282 (346)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~--~~~l~~~~~-d~----~i~iwd~~~~~~~~~~~~~~~~ 282 (346)
...+..+..+...+.. +.|+ ++.|+.++. ++ .|..||+.+++ .
T Consensus 344 -------------------~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~----------~ 394 (706)
T 2z3z_A 344 -------------------GRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK----------T 394 (706)
T ss_dssp -------------------SCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC----------C
T ss_pred -------------------CCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC----------c
Confidence 1223445556666766 6887 666655544 44 67777776653 1
Q ss_pred ccccCCCcCeeEEEEeecCCcceEEEE-cCC---CcEEEEEcCCCC
Q 019117 283 QKYPVPECDIWFIKFSCDFHYNAAAIG-NRE---GKIFVWELQSSP 324 (346)
Q Consensus 283 ~~~~~~~~~v~~~~~s~~~~~~~l~~~-~~d---g~i~iwd~~~~~ 324 (346)
..+. +...+..++|+||+ ++++.. +.+ +.|++||+.+++
T Consensus 395 ~~l~-~~~~~~~~~~spdg--~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 395 KDLT-PESGMHRTQLSPDG--SAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EESC-CSSSEEEEEECTTS--SEEEEEEECSSCSCEEEEEESSSCE
T ss_pred eecc-CCCceEEEEECCCC--CEEEEEecCCCCCcEEEEEECCCCe
Confidence 2222 45578899999999 455554 333 569999998876
No 156
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.87 E-value=2.5e-20 Score=157.18 Aligned_cols=272 Identities=11% Similarity=0.055 Sum_probs=173.4
Q ss_pred eeeecccCCCceEE-----EEEEeecCCCccEEEEEcC-Cc---EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcC
Q 019117 25 VTNKLQEGKRPLYA-----VVFNFIDSRYFNVFATVGG-NR---VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV 95 (346)
Q Consensus 25 ~~~~~~~h~~~v~~-----~~~~p~~~~~~~~la~~~~-~~---v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 95 (346)
....+..|...... .+|+| +|+.|+.++. ++ |.+||+.+++....... +...+....| +|
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~Sp----Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~-----~~~~~~~~~~--sp 90 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTR----DGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG-----RGDNTFGGFL--SP 90 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCT----TSCEEEEEECTTSSCEEEEEETTTCEEEECCCS-----SCBCSSSCEE--CT
T ss_pred ceEEecCCcccccchhhcCccCCC----CCCEEEEEEcCCCCceEEEEeCCCCceEEeeeC-----CCCCccceEE--cC
Confidence 34556667666665 78999 7888888776 55 88888877765444332 2222222344 59
Q ss_pred CCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEE--EeCCCCceEEEe----------------------eCCC
Q 019117 96 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR--TQPLKPSLVVSA----------------------SKDE 151 (346)
Q Consensus 96 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~s~----------------------~~d~ 151 (346)
+|+ .|+.++.++.|.+||+.+++....+..+...+.... ++| ++..++.. ..+.
T Consensus 91 dg~-~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (388)
T 3pe7_A 91 DDD-ALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCC 168 (388)
T ss_dssp TSS-EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCE
T ss_pred CCC-EEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcc
Confidence 999 999999899999999999987766666666554444 477 67776632 2447
Q ss_pred CEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecC------CeEEEEEccccceeeeeceeecCCCCCCC
Q 019117 152 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD------NTVKIWSMKEFWTYVEKSFTWTDLPSKFP 225 (346)
Q Consensus 152 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 225 (346)
.|.+||+.+++...... +...+..++|+|.++..|+....+ ..|.++|+....
T Consensus 169 ~l~~~d~~~g~~~~l~~----~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~----------------- 227 (388)
T 3pe7_A 169 RLMRVDLKTGESTVILQ----ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN----------------- 227 (388)
T ss_dssp EEEEEETTTCCEEEEEE----ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-----------------
T ss_pred eEEEEECCCCceEEeec----CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-----------------
Confidence 89999999887655543 667789999998345555555443 367777765521
Q ss_pred CccceeceEEEeecc--cceEEEEec--CCEEEEEee-cC----eEEEEcCCCCCCCCCCccccccccccCCC---cCee
Q 019117 226 TKYVQFPVFIASVHS--NYVDCNRWL--GDFILSKSV-DN----EIVLWEPKMKEQSPGEGTADILQKYPVPE---CDIW 293 (346)
Q Consensus 226 ~~~~~~~~~~~~~~~--~~i~~~~~~--~~~l~~~~~-d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~v~ 293 (346)
...+..+. ..+....|+ |+.|+..+. ++ .|.+||+.+++.. .+..+..+. ....
T Consensus 228 -------~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~-------~l~~~~~~~~~~~~~~ 293 (388)
T 3pe7_A 228 -------MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENR-------QLTSMPACSHLMSNYD 293 (388)
T ss_dssp -------CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEE-------EEEEECCEEEEEECTT
T ss_pred -------eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceE-------EEEcCCCceeeeecCC
Confidence 11222222 246677787 666655443 22 3999999987621 222222210 0012
Q ss_pred EEEEeecCCcceEEEE---------cCCCcEEEEEcCCCCcceeeeeee-----------eEEEEEecCCCCC
Q 019117 294 FIKFSCDFHYNAAAIG---------NREGKIFVWELQSSPPVLIARLIC-----------FSLHVKYNPQSVY 346 (346)
Q Consensus 294 ~~~~s~~~~~~~l~~~---------~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~~~~spdg~~ 346 (346)
.+.|+||++ .|+.. ..+..|++||+.+++......... .+..++|+|||++
T Consensus 294 ~~~~spdg~--~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~ 364 (388)
T 3pe7_A 294 GSLMVGDGS--DAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQ 364 (388)
T ss_dssp SSEEEEEEC--CC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSE
T ss_pred CCeEccCCC--cceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCE
Confidence 237999994 45532 456789999999987544444433 3567899999973
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.86 E-value=1e-20 Score=172.15 Aligned_cols=267 Identities=11% Similarity=0.025 Sum_probs=165.8
Q ss_pred EEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec---------CC
Q 019117 38 AVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI---------NG 108 (346)
Q Consensus 38 ~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~---------dg 108 (346)
+++|+| ++++++++.++.|++||..+++....+...... ...+..++|+ |||+ +|+.++. ++
T Consensus 20 ~~~~s~----dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~S--pDg~-~la~~~~~~~~~~~s~~~ 90 (719)
T 1z68_A 20 FPNWIS----GQEYLHQSADNNIVLYNIETGQSYTILSNRTMK--SVNASNYGLS--PDRQ-FVYLESDYSKLWRYSYTA 90 (719)
T ss_dssp CCEESS----SSEEEEECTTSCEEEEESSSCCEEEEECHHHHH--TTTCSEEEEC--TTSS-EEEEEEEEEECSSSCEEE
T ss_pred ccEECC----CCeEEEEcCCCCEEEEEcCCCcEEEEEcccccc--ccceeeEEEC--CCCC-eEEEEecCceeEEeecce
Confidence 789999 777777665444999999888876555421100 0125556655 9999 8888876 68
Q ss_pred eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcce-----------
Q 019117 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV----------- 177 (346)
Q Consensus 109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v----------- 177 (346)
.|++||+.+++.+.... ....+..++|+| +++.|+.+. ++.|++||+.+++....... ++...|
T Consensus 91 ~i~~~d~~~g~~~~~~~-l~~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~--~~~~~v~~g~~~~v~~e 165 (719)
T 1z68_A 91 TYYIYDLSNGEFVRGNE-LPRPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFN--GRENKIFNGIPDWVYEE 165 (719)
T ss_dssp EEEEEETTTTEECCSSC-CCSSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCCC--CBTTTEEESSCCHHHHH
T ss_pred EEEEEECCCCcccccee-cCcccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecC--CCcCCeEcccccceeee
Confidence 99999999887631111 125688999999 888888886 78999999988876543321 222222
Q ss_pred ------EEEEecCCCCcEEEEEecCC----------------------------------eEEEEEccccceeeeeceee
Q 019117 178 ------LSVDFHPSDIYRIASCGMDN----------------------------------TVKIWSMKEFWTYVEKSFTW 217 (346)
Q Consensus 178 ------~~~~~~~~~~~~l~s~~~d~----------------------------------~i~iwd~~~~~~~~~~~~~~ 217 (346)
.+++|+| +++.|++++.|. .|.+||+..........
T Consensus 166 e~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~--- 241 (719)
T 1z68_A 166 EMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQE--- 241 (719)
T ss_dssp HTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEE---
T ss_pred ecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeE---
Confidence 4899999 888888877652 66777776632100000
Q ss_pred cCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeec----CeEEEEc----CCCCCCCCCCccccccccc--
Q 019117 218 TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD----NEIVLWE----PKMKEQSPGEGTADILQKY-- 285 (346)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d----~~i~iwd----~~~~~~~~~~~~~~~~~~~-- 285 (346)
.. ....+..|...+.+++|+ ++++++.... ..|.+|| +.+++. ...+
T Consensus 242 -----------~~-~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~---------~~~~~~ 300 (719)
T 1z68_A 242 -----------VP-VPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC---------PKTQEH 300 (719)
T ss_dssp -----------CC-CCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC---------CGGGEE
T ss_pred -----------cc-CCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce---------EEEEec
Confidence 00 001123467788999998 5555554332 3488899 766652 2222
Q ss_pred --cCCCcCee-----EEEEeecCCcceEEEEcCCC--cEEEEEcCCCCcceeeeeeeeEEEEEecCCC
Q 019117 286 --PVPECDIW-----FIKFSCDFHYNAAAIGNREG--KIFVWELQSSPPVLIARLICFSLHVKYNPQS 344 (346)
Q Consensus 286 --~~~~~~v~-----~~~~s~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg 344 (346)
..+...+. .+.|+||++.-++++...+| .|.+||+.+++..........+..+.++ ||
T Consensus 301 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~ 367 (719)
T 1z68_A 301 IEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQ 367 (719)
T ss_dssp EEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CS
T ss_pred ccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eC
Confidence 24555555 78999999521233454555 5777788776633222222224444444 44
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.86 E-value=2e-19 Score=149.22 Aligned_cols=221 Identities=12% Similarity=0.033 Sum_probs=153.7
Q ss_pred EcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCC-CceEEEEEeCCCCce-EEEeeCCCCEEEEecCCCeeEEEeccc
Q 019117 93 CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG-DSINEIRTQPLKPSL-VVSASKDESVRLWNVQTGICILIFAGA 170 (346)
Q Consensus 93 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~ 170 (346)
+++++. ++++++.++.|.+||+.+++.+..+..+. ..+..++|+| +++. ++++..++.|.+||+.+++.+..+..
T Consensus 7 ~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~- 83 (349)
T 1jmx_B 7 LKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANL- 83 (349)
T ss_dssp CCTTCE-EEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEES-
T ss_pred ccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc-
Confidence 346777 89999999999999999999888776543 2578999999 6664 55666789999999999988877752
Q ss_pred CCC-----CcceEEEEecCCCCcEEEEEecC------------CeEEEEEccccceeeeeceeecCCCCCCCCccceece
Q 019117 171 GGH-----RNEVLSVDFHPSDIYRIASCGMD------------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 233 (346)
Q Consensus 171 ~~~-----~~~v~~~~~~~~~~~~l~s~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (346)
.+ ...+.+++|+| +++++++++.+ +.|.+||+.+.+. ...+
T Consensus 84 -~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--------------------~~~~ 141 (349)
T 1jmx_B 84 -SSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE--------------------AKPV 141 (349)
T ss_dssp -CCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG--------------------BCCS
T ss_pred -ccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccc--------------------ccee
Confidence 12 23478999999 88888888765 8999999987321 0111
Q ss_pred EEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCcccc-------------------------c---cc
Q 019117 234 FIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTAD-------------------------I---LQ 283 (346)
Q Consensus 234 ~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------------------------~---~~ 283 (346)
... .+...+.+++|+ ++ +++++ +.|.+||+.+++......... . +.
T Consensus 142 ~~~-~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (349)
T 1jmx_B 142 RTF-PMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA 217 (349)
T ss_dssp EEE-ECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE
T ss_pred eec-cCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeee
Confidence 122 234457788887 66 55544 349999998775321100000 0 00
Q ss_pred -------------------------------cccCCCcCeeEEEEee-cCCcceEEEEcCCCcEEEEEcCCCCcceeeee
Q 019117 284 -------------------------------KYPVPECDIWFIKFSC-DFHYNAAAIGNREGKIFVWELQSSPPVLIARL 331 (346)
Q Consensus 284 -------------------------------~~~~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 331 (346)
.+..+...+..++|+| ++ ++++++ ++.|.+||+.+++.+.....
T Consensus 218 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg--~~l~~~--~~~v~~~d~~~~~~~~~~~~ 293 (349)
T 1jmx_B 218 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP--NQIYGV--LNRLAKYDLKQRKLIKAANL 293 (349)
T ss_dssp EC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT--TEEEEE--ESEEEEEETTTTEEEEEEEC
T ss_pred ecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC--CEEEEE--cCeEEEEECccCeEEEEEcC
Confidence 0000112456778889 88 567776 88999999999887666666
Q ss_pred eeeEEEEEecCCCCC
Q 019117 332 ICFSLHVKYNPQSVY 346 (346)
Q Consensus 332 ~~~~~~~~~spdg~~ 346 (346)
...+.+++|+|||++
T Consensus 294 ~~~~~~~~~s~dg~~ 308 (349)
T 1jmx_B 294 DHTYYCVAFDKKGDK 308 (349)
T ss_dssp SSCCCEEEECSSSSC
T ss_pred CCCccceEECCCCCE
Confidence 666789999999874
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.85 E-value=2.9e-18 Score=143.06 Aligned_cols=257 Identities=10% Similarity=0.040 Sum_probs=154.1
Q ss_pred cEEEEEeccC-ceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC----CeEEEEEccC--cc--eeeeeccCCC
Q 019117 59 RVTVYQCLEG-GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN----GIIRVIDVSN--EK--LHKSFVGHGD 129 (346)
Q Consensus 59 ~v~i~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~--~~--~~~~~~~~~~ 129 (346)
+|.+|.+... ..+..+... +......++|+ |+|+ +|++++.+ +.|.+|++.. ++ .+.....+..
T Consensus 28 ~i~~~~~d~~~g~~~~~~~~----~~~~p~~l~~s--pdg~-~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~ 100 (361)
T 3scy_A 28 GIYTFRFNEETGESLPLSDA----EVANPSYLIPS--ADGK-FVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGA 100 (361)
T ss_dssp EEEEEEEETTTCCEEEEEEE----ECSCCCSEEEC--TTSS-EEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSS
T ss_pred CEEEEEEeCCCCCEEEeecc----cCCCCceEEEC--CCCC-EEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCC
Confidence 4999987532 222333222 22333345555 9998 88888875 7999999876 43 3334444556
Q ss_pred ceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecc---c--------CCCCcceEEEEecCCCCcEE-EEEecCC
Q 019117 130 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG---A--------GGHRNEVLSVDFHPSDIYRI-ASCGMDN 197 (346)
Q Consensus 130 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~--------~~~~~~v~~~~~~~~~~~~l-~s~~~d~ 197 (346)
....+++ . +..++++...++.|.+|++.....+..+.. . ..+...+.+++|+| +++++ ++...++
T Consensus 101 ~p~~~~~-d-g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~ 177 (361)
T 3scy_A 101 DPCYLTT-N-GKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTD 177 (361)
T ss_dssp CEEEEEE-C-SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTT
T ss_pred CcEEEEE-C-CCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCC
Confidence 6777777 3 444444444688999999975433322210 0 01233468899999 77655 4445588
Q ss_pred eEEEEEccccce----e-eeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe-ecCeEEEEcCCC
Q 019117 198 TVKIWSMKEFWT----Y-VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS-VDNEIVLWEPKM 269 (346)
Q Consensus 198 ~i~iwd~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~-~d~~i~iwd~~~ 269 (346)
.|.+|++..... . +.. ..........+......++|+ |+++++++ .++.|.+|++.+
T Consensus 178 ~v~v~~~~~~~~~~~~~~l~~---------------~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 242 (361)
T 3scy_A 178 QIHKFNINPNANADNKEKFLT---------------KGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD 242 (361)
T ss_dssp EEEEEEECTTCCTTTCCCCEE---------------EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET
T ss_pred EEEEEEEcCCCCcccccceee---------------cccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC
Confidence 999999876221 0 000 000011122234456788888 77777776 689999999986
Q ss_pred CCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEE-cC-CCcEEEEEcC--CCCcceeeeee--eeEEEEEecCC
Q 019117 270 KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG-NR-EGKIFVWELQ--SSPPVLIARLI--CFSLHVKYNPQ 343 (346)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~-~~-dg~i~iwd~~--~~~~~~~~~~~--~~~~~~~~spd 343 (346)
++.. ....+.....+......++|+||+ ++|+++ .. ++.|.+|++. +++......+. ..+..++|+||
T Consensus 243 g~~~----~~~~~~~~~~~~~~~~~i~~spdg--~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spd 316 (361)
T 3scy_A 243 GMLD----EIQTVAADTVNAQGSGDIHLSPDG--KYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPN 316 (361)
T ss_dssp TEEE----EEEEEESCSSCCCCEEEEEECTTS--SEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTT
T ss_pred CceE----EeEEEecCCCCCCCcccEEECCCC--CEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCC
Confidence 5310 000112222333456899999999 566444 44 5899999996 45543333333 35788999999
Q ss_pred CCC
Q 019117 344 SVY 346 (346)
Q Consensus 344 g~~ 346 (346)
|++
T Consensus 317 g~~ 319 (361)
T 3scy_A 317 GKY 319 (361)
T ss_dssp SCE
T ss_pred CCE
Confidence 974
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.85 E-value=2.4e-18 Score=143.65 Aligned_cols=255 Identities=13% Similarity=0.088 Sum_probs=161.7
Q ss_pred CCCceEEEEEEeecCCCccEEEEEcCCcEEEEEec-cCceeeeEeeeecCCCccceEEEEEEEcCCCCc-EEEEee----
Q 019117 32 GKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCL-EGGVIAALQSYVDEDKEESFYTVSWACNVDGIP-FLVAGG---- 105 (346)
Q Consensus 32 h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~l~~~~---- 105 (346)
+...+..++|+| ++++|++++.+.|.+|++. +++...... +.. .. .... +.++|+|+. +++++.
T Consensus 38 ~~~~~~~~a~sp----dg~~l~~~~~~~v~~~~~~~~g~~~~~~~-~~~--~g-~~~~--~~~spdg~~l~~~~~~~~~~ 107 (365)
T 1jof_A 38 QDEPISWMTFDH----ERKNIYGAAMKKWSSFAVKSPTEIVHEAS-HPI--GG-HPRA--NDADTNTRAIFLLAAKQPPY 107 (365)
T ss_dssp TTCCCSEEEECT----TSSEEEEEEBTEEEEEEEEETTEEEEEEE-EEC--CS-SGGG--GCTTSCCEEEEEEECSSTTC
T ss_pred CCCCCcEEEECC----CCCEEEEEccceEEEEEECCCCCEEEeeE-eec--CC-CCcc--EEECCCCCEEEEEEecCCcc
Confidence 345678899999 7888888877789999987 665433222 211 11 1222 345699983 244553
Q ss_pred ---------cCCeEEEEEcc-Ccceeeeec----cCCCceEEEEEeCCCCceEEEee-CCCCEEEEecC-CCeeEE--Ee
Q 019117 106 ---------INGIIRVIDVS-NEKLHKSFV----GHGDSINEIRTQPLKPSLVVSAS-KDESVRLWNVQ-TGICIL--IF 167 (346)
Q Consensus 106 ---------~dg~i~iwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~-~~~~~~--~~ 167 (346)
.+|.+.+|++. +++....+. .+...+.+++|+| ++++++++. .++.|.+||+. +++... .+
T Consensus 108 ~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~ 186 (365)
T 1jof_A 108 AVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSV 186 (365)
T ss_dssp CEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEE
T ss_pred eeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeE
Confidence 68999999997 465544333 2456799999999 777777665 46799999998 676432 22
Q ss_pred cccCCCCcceEEEEecCCCCcEEEEEec-CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE----eeccc-
Q 019117 168 AGAGGHRNEVLSVDFHPSDIYRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA----SVHSN- 241 (346)
Q Consensus 168 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~- 241 (346)
.. ..+...+..++|+| +++++++++. ++.|.+|++........... ..+..+ ..|..
T Consensus 187 ~~-~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~---------------~~~~~~~~~~~g~~~~ 249 (365)
T 1jof_A 187 DA-PDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTH---------------HSFPLIPPGIPDRDPE 249 (365)
T ss_dssp EC-SSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEE---------------EEEESSCTTCCCBCTT
T ss_pred ec-CCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEcc---------------ceEEcCCCCcCCcccc
Confidence 21 01356789999999 8877776664 78999998763110000000 000001 11222
Q ss_pred -----ceEEEE-ec--CCEEEEEeecC------eEEEEcCC-CCCCCCCCccccccc-cccCCCcCeeEEEEee---cCC
Q 019117 242 -----YVDCNR-WL--GDFILSKSVDN------EIVLWEPK-MKEQSPGEGTADILQ-KYPVPECDIWFIKFSC---DFH 302 (346)
Q Consensus 242 -----~i~~~~-~~--~~~l~~~~~d~------~i~iwd~~-~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~---~~~ 302 (346)
.+..++ |+ |++|+++..+. +|.+|++. +++. ..+. ....+...+..++|+| |+
T Consensus 250 ~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~-------~~~~~~~~~~~~~~~~~a~sp~~~dg- 321 (365)
T 1jof_A 250 TGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI-------EKQLFLSPTPTSGGHSNAVSPCPWSD- 321 (365)
T ss_dssp TSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE-------EEEEEEEECSSCCTTCCCEEECTTCT-
T ss_pred cccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE-------EEeeeeeecCCCCcccceecCCCcCC-
Confidence 477888 87 77887776543 89999996 3331 0111 1222344567789999 78
Q ss_pred cceEEEEcC-CCcEEEEEcCCC
Q 019117 303 YNAAAIGNR-EGKIFVWELQSS 323 (346)
Q Consensus 303 ~~~l~~~~~-dg~i~iwd~~~~ 323 (346)
++|++++. ++.|.+|++...
T Consensus 322 -~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 322 -EWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp -TEEEEECSSSCEEEEEEEETT
T ss_pred -CEEEEEEcCCCeEEEEEEchh
Confidence 67877775 589999999876
No 161
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.84 E-value=1.3e-18 Score=144.73 Aligned_cols=285 Identities=11% Similarity=0.016 Sum_probs=179.2
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEcC----------Cc-EEEEEeccCceeeeEeeeecCC-CccceEEEE
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGG----------NR-VTVYQCLEGGVIAALQSYVDED-KEESFYTVS 90 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~----------~~-v~i~~~~~~~~~~~~~~~~~~~-~~~~v~~~~ 90 (346)
.++...+..+..+ .++|+| ++++++++.. ++ |.+||..+.+.+..+....... +......++
T Consensus 41 ~~~~~~i~~g~~p--~i~~sp----dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~ 114 (361)
T 2oiz_A 41 GKFLGMVPTAFNG--HVQVSN----DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFR 114 (361)
T ss_dssp CCEEEEEECCEEE--EEEECT----TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEE
T ss_pred CeEEEEecCCCCC--ceEECC----CCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEE
Confidence 3445556556555 899999 7888888752 23 9999998888777765421100 112222344
Q ss_pred EEEcCCCCcEEEEeec--CCeEEEEEccCcceeee-eccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC-CeeEEE
Q 019117 91 WACNVDGIPFLVAGGI--NGIIRVIDVSNEKLHKS-FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT-GICILI 166 (346)
Q Consensus 91 ~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~ 166 (346)
++|+|+ +|+++.. ++.|.+||+.+++.+.. +... + ...+.+.|.+...+++.+.||.+.+|++.. ++....
T Consensus 115 --~spdg~-~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~ 189 (361)
T 2oiz_A 115 --QTTDGK-FIVLQNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQ 189 (361)
T ss_dssp --ECTTSS-EEEEEEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEE
T ss_pred --ECCCCC-EEEEECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeee
Confidence 459999 8887764 58999999999988877 6532 2 233667785557888899999999999865 554422
Q ss_pred ec---ccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce
Q 019117 167 FA---GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV 243 (346)
Q Consensus 167 ~~---~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 243 (346)
.. .......++ .+.++| ++..++..+.++.|.++|+............... .. .... ...+...
T Consensus 190 ~~~~~~~~~~~~~~-~~~~~~-~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~-------~~-~~~~---~~~p~g~ 256 (361)
T 2oiz_A 190 SRSKQMFSVKDDPI-FIAPAL-DKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLN-------DE-DKAK---NWVPGGY 256 (361)
T ss_dssp EECCCCSCTTTSCB-CSCCEE-CSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCC-------HH-HHHT---TCEECCS
T ss_pred ccccceEcCCCCce-EEEecc-cCCEEEEEeCCCeEEEEEecCCCceecccccccC-------cc-cccc---ccccCCe
Confidence 11 000122222 333455 4555666678899999998752211110000000 00 0000 0000111
Q ss_pred EEEEec--CCEEEEEee-----------cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc
Q 019117 244 DCNRWL--GDFILSKSV-----------DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN 310 (346)
Q Consensus 244 ~~~~~~--~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~ 310 (346)
..++++ ++.++++.. .+.|.+||+.+.+ .+..+..+. +.+++|+||+ ++|+++.
T Consensus 257 ~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~---------~v~~i~~~~--p~~ia~spdg--~~l~v~n 323 (361)
T 2oiz_A 257 NLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ---------RVARIPGRD--ALSMTIDQQR--NLMLTLD 323 (361)
T ss_dssp SCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE---------EEEEEECTT--CCEEEEETTT--TEEEEEC
T ss_pred eEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc---------EEEEEecCC--eeEEEECCCC--CEEEEeC
Confidence 113444 566666543 3589999999877 677777666 8999999999 5777777
Q ss_pred CCCcEEEEEcCCC--Ccceee-eeeeeEEEEEecCCCC
Q 019117 311 REGKIFVWELQSS--PPVLIA-RLICFSLHVKYNPQSV 345 (346)
Q Consensus 311 ~dg~i~iwd~~~~--~~~~~~-~~~~~~~~~~~spdg~ 345 (346)
. +.|.+||..++ +.+..+ .....+..++++|||+
T Consensus 324 ~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 324 G-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp S-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred C-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 6 99999999999 655553 4556689999999997
No 162
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=1.3e-19 Score=160.77 Aligned_cols=215 Identities=11% Similarity=-0.009 Sum_probs=146.4
Q ss_pred ccceEEEEEEEcCCCCcEEEEeec-CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeC---CCCEEEEec
Q 019117 83 EESFYTVSWACNVDGIPFLVAGGI-NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK---DESVRLWNV 158 (346)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---d~~i~iwd~ 158 (346)
...|+.++++ |||+ .||.++. ||+++||++.+++..+....+...+..++|+| + +++++++. +....+|.+
T Consensus 21 ~~~~~~~~~~--~DG~-~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~sp-d-~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 21 AVEKYSLQGV--VDGD-KLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGV-G-RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HSCEEEEEEE--ETTT-EEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTC-S-EEEEEEECSTTSCCEEEEEE
T ss_pred ccchheeecC--CCCC-eEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCC-C-eEEEEeccCCCCcceEEEEE
Confidence 3457767766 9999 8888776 99999999977665554443446899999999 6 77777765 455666655
Q ss_pred CC---CeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEE
Q 019117 159 QT---GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 235 (346)
Q Consensus 159 ~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (346)
.. +... .+. ....+...+|+|++...+++.+.++.+.+||+.+.+ ...
T Consensus 96 ~~~~~g~~~-~l~----~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~------------------------~~~ 146 (582)
T 3o4h_A 96 NTSRPGEEQ-RLE----AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG------------------------LRE 146 (582)
T ss_dssp ETTSTTCCE-ECT----TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE------------------------EEE
T ss_pred eccCCCccc-ccc----CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCc------------------------EEE
Confidence 43 3322 443 222344667887343444555555556699998732 112
Q ss_pred EeecccceEEEEec--CCEEEEEeec----CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEE
Q 019117 236 ASVHSNYVDCNRWL--GDFILSKSVD----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG 309 (346)
Q Consensus 236 ~~~~~~~i~~~~~~--~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~ 309 (346)
+..+.. .++.|+ |++|++++.+ +.|++||+.+++ ...+..+...+..++||||| ++|+++
T Consensus 147 l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~----------~~~l~~~~~~~~~~~~SpDG--~~l~~~ 212 (582)
T 3o4h_A 147 LARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG----------LRVFDSGEGSFSSASISPGM--KVTAGL 212 (582)
T ss_dssp EEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC----------CEEECCSSCEEEEEEECTTS--CEEEEE
T ss_pred eecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC----------ceEeecCCCccccceECCCC--CEEEEc
Confidence 222333 566776 9999988887 789999998875 23556677788999999999 678888
Q ss_pred cCCC--cEEEEEcCCCCcceeeeeeeeEEEEE--------ecCCCC
Q 019117 310 NREG--KIFVWELQSSPPVLIARLICFSLHVK--------YNPQSV 345 (346)
Q Consensus 310 ~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~--------~spdg~ 345 (346)
..++ .|++||+.+++..........+..+. |||||+
T Consensus 213 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 258 (582)
T 3o4h_A 213 ETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGR 258 (582)
T ss_dssp ECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSC
T ss_pred cCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCc
Confidence 8888 89999999987652222222344455 999984
No 163
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.82 E-value=2.7e-19 Score=162.80 Aligned_cols=264 Identities=8% Similarity=0.023 Sum_probs=164.5
Q ss_pred ceEEEEEEeecCCCccEEEEEcC---------Cc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117 35 PLYAVVFNFIDSRYFNVFATVGG---------NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (346)
Q Consensus 35 ~v~~~~~~p~~~~~~~~la~~~~---------~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 104 (346)
.|.+++||| +|++||+++. ++ |.+||+.+++.+.... ....+..++|+ |||+ .|+.+
T Consensus 61 ~~~~~~~Sp----Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~------l~~~~~~~~~S--PDG~-~la~~ 127 (719)
T 1z68_A 61 NASNYGLSP----DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE------LPRPIQYLCWS--PVGS-KLAYV 127 (719)
T ss_dssp TCSEEEECT----TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC------CCSSBCCEEEC--SSTT-CEEEE
T ss_pred ceeeEEECC----CCCeEEEEecCceeEEeecceEEEEEECCCCcccccee------cCcccccceEC--CCCC-EEEEE
Confidence 388999999 8899998876 34 9999988776521111 01234446665 9999 88887
Q ss_pred ecCCeEEEEEccCcceeeee-ccCCCce-----------------EEEEEeCCCCceEEEeeCCC---------------
Q 019117 105 GINGIIRVIDVSNEKLHKSF-VGHGDSI-----------------NEIRTQPLKPSLVVSASKDE--------------- 151 (346)
Q Consensus 105 ~~dg~i~iwd~~~~~~~~~~-~~~~~~v-----------------~~~~~~~~~~~~l~s~~~d~--------------- 151 (346)
. ++.|++|++.+++..+.. .++...| .+++|+| +++.|++++.|.
T Consensus 128 ~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~ 205 (719)
T 1z68_A 128 Y-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQ 205 (719)
T ss_dssp E-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSS
T ss_pred E-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCC
Confidence 5 789999999888765432 2332222 4899999 888998887552
Q ss_pred -------------------CEEEEecCCCeeE--EEec---ccCCCCcceEEEEecCCCCcEEEEEecC----CeEEEEE
Q 019117 152 -------------------SVRLWNVQTGICI--LIFA---GAGGHRNEVLSVDFHPSDIYRIASCGMD----NTVKIWS 203 (346)
Q Consensus 152 -------------------~i~iwd~~~~~~~--~~~~---~~~~~~~~v~~~~~~~~~~~~l~s~~~d----~~i~iwd 203 (346)
.|++||+.+++.. ..+. ...+|...+..++|+| ++.++++.... ..|.+||
T Consensus 206 ~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d 284 (719)
T 1z68_A 206 YPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICD 284 (719)
T ss_dssp SCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEE
T ss_pred CccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEc
Confidence 7889999887643 1111 0115788899999999 67777774432 2488888
Q ss_pred ----ccccceeeeeceeecCCCCCCCCccceece-EEEeecccceE-----EEEec--CCEEEE--EeecC--eEEEEcC
Q 019117 204 ----MKEFWTYVEKSFTWTDLPSKFPTKYVQFPV-FIASVHSNYVD-----CNRWL--GDFILS--KSVDN--EIVLWEP 267 (346)
Q Consensus 204 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~-----~~~~~--~~~l~~--~~~d~--~i~iwd~ 267 (346)
+.+.+.. ... .....|...+. .+.|+ |+.++. ...++ .|.+||+
T Consensus 285 ~~~~~~~g~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~ 344 (719)
T 1z68_A 285 FREDWQTWDCP--------------------KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKD 344 (719)
T ss_dssp ECSSSSSEECC--------------------GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESS
T ss_pred ccCCCCCCceE--------------------EEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEEC
Confidence 5542210 000 00124455554 66776 664433 44454 5777777
Q ss_pred CCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcC----CCcEEEEEcCC--CCc-ceeee-----eeeeE
Q 019117 268 KMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR----EGKIFVWELQS--SPP-VLIAR-----LICFS 335 (346)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~----dg~i~iwd~~~--~~~-~~~~~-----~~~~~ 335 (346)
.+++ ...+..+...+..+.++ +++ .+++++.. ++..++|.+.. +.. ..... ....+
T Consensus 345 ~~~~----------~~~lt~~~~~v~~~~~~-d~~-~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~ 412 (719)
T 1z68_A 345 TVEN----------AIQITSGKWEAINIFRV-TQD-SLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQY 412 (719)
T ss_dssp CSTT----------CEECSCSSSCEEEEEEE-CSS-EEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCB
T ss_pred CCCc----------eEecccCceEEEEEEEE-eCC-EEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCce
Confidence 6653 22334445567777777 774 34444444 47889998764 321 11111 11345
Q ss_pred EEEEecCCCCC
Q 019117 336 LHVKYNPQSVY 346 (346)
Q Consensus 336 ~~~~~spdg~~ 346 (346)
..+.|+|||++
T Consensus 413 ~~~~~s~dg~~ 423 (719)
T 1z68_A 413 YTASFSDYAKY 423 (719)
T ss_dssp EEEEECGGGSS
T ss_pred EEEEECCCCCE
Confidence 67899999874
No 164
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.82 E-value=7.2e-17 Score=130.09 Aligned_cols=248 Identities=11% Similarity=0.117 Sum_probs=168.4
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeee-cCCCccceEEEEEEEcCCCCcEEEEeec-
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYV-DEDKEESFYTVSWACNVDGIPFLVAGGI- 106 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~- 106 (346)
.++...+.+++++| ++.++++...++ |.+||.. ++....+.... ...+...+..+++. .+++. ++++...
T Consensus 26 ~g~~~~p~~v~~~~----~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~-~~~g~-l~v~~~~~ 98 (286)
T 1q7f_A 26 EGQFTEPSGVAVNA----QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVV-RNSGD-IIVTERSP 98 (286)
T ss_dssp TTCBSCEEEEEECT----TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEE-TTTTE-EEEEECGG
T ss_pred CCccCCCceEEECC----CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEE-cCCCe-EEEEcCCC
Confidence 34556789999998 678888876665 9999965 55544443211 01122345556552 35665 5555533
Q ss_pred CCeEEEEEccCcceeeeec-cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCC
Q 019117 107 NGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS 185 (346)
Q Consensus 107 dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 185 (346)
++.|.+|| .+++.+..+. .+...+..+++.| +++++++...++.|.+||.. ++.+..+... .+...+.+++++|
T Consensus 99 ~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~-~~~~~p~~i~~~~- 173 (286)
T 1q7f_A 99 THQIQIYN-QYGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCS-KHLEFPNGVVVND- 173 (286)
T ss_dssp GCEEEEEC-TTSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECT-TTCSSEEEEEECS-
T ss_pred CCEEEEEC-CCCcEEEEecCccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCC-CCEEEEeCCC-CccCCcEEEEECC-
Confidence 78999999 5677666664 3445789999999 77888887788999999964 6666665421 2445789999998
Q ss_pred CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeec--ccceEEEEec--CCEEEEEeecC-
Q 019117 186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH--SNYVDCNRWL--GDFILSKSVDN- 260 (346)
Q Consensus 186 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~--~~~l~~~~~d~- 260 (346)
+++++++...++.|.+||.... .+..+..+ ...+..++++ |+++++...++
T Consensus 174 ~g~l~v~~~~~~~i~~~~~~g~------------------------~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~ 229 (286)
T 1q7f_A 174 KQEIFISDNRAHCVKVFNYEGQ------------------------YLRQIGGEGITNYPIGVGINSNGEILIADNHNNF 229 (286)
T ss_dssp SSEEEEEEGGGTEEEEEETTCC------------------------EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSC
T ss_pred CCCEEEEECCCCEEEEEcCCCC------------------------EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCE
Confidence 8888888788899999997541 11122211 2457788887 77777777776
Q ss_pred eEEEEcCCCCCCCCCCccccccccccCC--CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcc
Q 019117 261 EIVLWEPKMKEQSPGEGTADILQKYPVP--ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV 326 (346)
Q Consensus 261 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 326 (346)
.|.+||... + .+..+..+ ...+.+++++|++ .++++ +.|+.|++|++....++
T Consensus 230 ~i~~~~~~g-~---------~~~~~~~~~~~~~~~~i~~~~~g--~l~vs-~~~~~v~v~~~~~~~pv 284 (286)
T 1q7f_A 230 NLTIFTQDG-Q---------LISALESKVKHAQCFDVALMDDG--SVVLA-SKDYRLYIYRYVQLAPV 284 (286)
T ss_dssp EEEEECTTS-C---------EEEEEEESSCCSCEEEEEEETTT--EEEEE-ETTTEEEEEECSCCCCT
T ss_pred EEEEECCCC-C---------EEEEEcccCCCCcceeEEECCCC--cEEEE-CCCCeEEEEEccccccc
Confidence 999999653 2 23333332 2347789999998 56666 56899999998776543
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=4.4e-18 Score=155.07 Aligned_cols=275 Identities=11% Similarity=0.050 Sum_probs=164.5
Q ss_pred CceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC------
Q 019117 34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN------ 107 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d------ 107 (346)
.....++|+| ++++++++ ++.|++||+.+++....+..+........... +.++|||+ +|+.++.+
T Consensus 17 ~~~~~~~w~~----dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Spdg~-~l~~~~~~~~~~r~ 88 (740)
T 4a5s_A 17 LKLYSLRWIS----DHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSIND--YSISPDGQ-FILLEYNYVKQWRH 88 (740)
T ss_dssp CCCCCEEECS----SSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCE--EEECTTSS-EEEEEEEEEECSSS
T ss_pred ccccccEECC----CCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccc--eEECCCCC-EEEEEECCeeeEEE
Confidence 3466899999 78899987 44599999999887666554322111111222 34569999 88888875
Q ss_pred ---CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcce-------
Q 019117 108 ---GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV------- 177 (346)
Q Consensus 108 ---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v------- 177 (346)
+.+.+||+.+++... +..|...+...+|+| +++.|+.+. ++.|++|++.+++..+.... ++...+
T Consensus 89 ~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SP-dG~~la~~~-~~~i~~~~~~~~~~~~lt~~--g~~~~~~~g~~~~ 163 (740)
T 4a5s_A 89 SYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSYRITWT--GKEDIIYNGITDW 163 (740)
T ss_dssp CEEEEEEEEETTTTEECC-SSCCCTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCSC--CBTTTEEESBCCH
T ss_pred ccceEEEEEECCCCcEEE-cccCCCcceeeEECC-CCCEEEEEE-CCeEEEEECCCCceEEEcCC--CCccceecCcccc
Confidence 567799999988554 566778899999999 888888875 68999999988775443221 222222
Q ss_pred ----------EEEEecCCCCcEEEEEecCCe-EEEEEcccccee-----eeeceee--cCCCCC------CCCcc--cee
Q 019117 178 ----------LSVDFHPSDIYRIASCGMDNT-VKIWSMKEFWTY-----VEKSFTW--TDLPSK------FPTKY--VQF 231 (346)
Q Consensus 178 ----------~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~-----~~~~~~~--~~~~~~------~~~~~--~~~ 231 (346)
..+.|+| +++.|+..+.|.. +.+|++...... ......+ .+.... ..... ...
T Consensus 164 v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~ 242 (740)
T 4a5s_A 164 VYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT 242 (740)
T ss_dssp HHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSS
T ss_pred cccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCC
Confidence 3589999 8888887765543 777766432110 0000000 000000 00000 000
Q ss_pred --ceEEEe------ecccceEEEEec--CCEEEEEee----cCeEEEEcCCCCCCCCCCccccccccc--cCCCcCee--
Q 019117 232 --PVFIAS------VHSNYVDCNRWL--GDFILSKSV----DNEIVLWEPKMKEQSPGEGTADILQKY--PVPECDIW-- 293 (346)
Q Consensus 232 --~~~~~~------~~~~~i~~~~~~--~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~v~-- 293 (346)
....+. .|...+..+.|+ |+.++.... +..|.+||+.+++.... ...+..+ ..+...+.
T Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~---~~~~~~l~~~~~~~~v~~~ 319 (740)
T 4a5s_A 243 NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWN---CLVARQHIEMSTTGWVGRF 319 (740)
T ss_dssp CCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEE---ECGGGCEEEECSSSCSSSS
T ss_pred cceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccc---eeEEEEeeeccCCceEccC
Confidence 111222 266778999998 665555433 34799999988651000 0011111 22333333
Q ss_pred ---EEEEeecCCcceEE-EEc-CCC--cEEEEEcCCCCcce
Q 019117 294 ---FIKFSCDFHYNAAA-IGN-REG--KIFVWELQSSPPVL 327 (346)
Q Consensus 294 ---~~~~s~~~~~~~l~-~~~-~dg--~i~iwd~~~~~~~~ 327 (346)
...|+|||+ .++ ..+ .+| .|++||+.+++...
T Consensus 320 ~~~~p~fspDG~--~l~~~~s~~~G~~~l~~~~~~~~~~~~ 358 (740)
T 4a5s_A 320 RPSEPHFTLDGN--SFYKIISNEEGYRHICYFQIDKKDCTF 358 (740)
T ss_dssp SCCCCEECTTSS--EEEEEEECTTSCEEEEEEETTCSSCEE
T ss_pred cCCCceEcCCCC--EEEEEEEcCCCceEEEEEECCCCceEe
Confidence 678999994 444 444 343 68888988776543
No 166
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.81 E-value=6.9e-17 Score=132.79 Aligned_cols=246 Identities=11% Similarity=0.018 Sum_probs=173.1
Q ss_pred CCCceEEEEEEeecCCCccEEEEEcCC-------------------------cEEEEEeccCceeeeEeeeecCCCccce
Q 019117 32 GKRPLYAVVFNFIDSRYFNVFATVGGN-------------------------RVTVYQCLEGGVIAALQSYVDEDKEESF 86 (346)
Q Consensus 32 h~~~v~~~~~~p~~~~~~~~la~~~~~-------------------------~v~i~~~~~~~~~~~~~~~~~~~~~~~v 86 (346)
.-+.+.+|+++| +|+++++...+ .|.+||..+++....+. ..+-...
T Consensus 22 ~l~~v~~va~d~----~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~----~~~~~~p 93 (329)
T 3fvz_A 22 LPGQVSGVALDS----KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG----KNLFYLP 93 (329)
T ss_dssp CCSCEEEEEECT----TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC----TTTCSSE
T ss_pred ecCCceEEEECC----CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC----CCccCCc
Confidence 346799999998 78999998877 49999987777654332 1123345
Q ss_pred EEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc-eeeee---------ccCCCceEEEEEeCCCCceEEEee-CCCCEEE
Q 019117 87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-LHKSF---------VGHGDSINEIRTQPLKPSLVVSAS-KDESVRL 155 (346)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~---------~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~i 155 (346)
..+++. ++|+ ++++...++.|++||..... .+..+ ..+-.....++++|.++.++++.+ .++.|++
T Consensus 94 ~gia~d--~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~ 170 (329)
T 3fvz_A 94 HGLSID--TDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQ 170 (329)
T ss_dssp EEEEEC--TTSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEE
T ss_pred eEEEEC--CCCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEE
Confidence 556655 9998 88888889999999976542 44444 234457899999985567777775 6899999
Q ss_pred EecCCCeeEEEecccC-------CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCcc
Q 019117 156 WNVQTGICILIFAGAG-------GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY 228 (346)
Q Consensus 156 wd~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (346)
|| .+++.+..+.... ++-..+..++++|+++.++++...++.|++||..+.+.
T Consensus 171 ~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~------------------- 230 (329)
T 3fvz_A 171 FS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF------------------- 230 (329)
T ss_dssp EC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-------------------
T ss_pred Ec-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE-------------------
Confidence 99 5677777764211 12244899999993388888888899999999985221
Q ss_pred ceeceEEE--eecccceEEEEec--------CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccc---cCCCcCeeEE
Q 019117 229 VQFPVFIA--SVHSNYVDCNRWL--------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY---PVPECDIWFI 295 (346)
Q Consensus 229 ~~~~~~~~--~~~~~~i~~~~~~--------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~ 295 (346)
+..+ ..+...+..++++ ++..++...+.+|++|++.+++ .+..+ ..+...+..+
T Consensus 231 ----~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~---------~~~~~~~~~~~~~~p~~i 297 (329)
T 3fvz_A 231 ----VREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGE---------IIDVFKPVRKHFDMPHDI 297 (329)
T ss_dssp ----EEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCC---------EEEEECCSSSCCSSEEEE
T ss_pred ----EEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCe---------EEEEEcCCCCccCCeeEE
Confidence 1111 1233344455554 3333333445689999998876 34443 3455678999
Q ss_pred EEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117 296 KFSCDFHYNAAAIGNREGKIFVWELQSS 323 (346)
Q Consensus 296 ~~s~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (346)
+++|++ .++++...++.|++|++...
T Consensus 298 a~~~dG--~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 298 VASEDG--TVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EECTTS--EEEEEESSSCCEEEEEEEEC
T ss_pred EECCCC--CEEEEECCCCEEEEEeCCcc
Confidence 999999 78899999999999998753
No 167
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.81 E-value=6.9e-19 Score=148.64 Aligned_cols=256 Identities=12% Similarity=0.028 Sum_probs=160.9
Q ss_pred eEEEEEEeecCCCccEEEEEcCC----cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 019117 36 LYAVVFNFIDSRYFNVFATVGGN----RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (346)
Q Consensus 36 v~~~~~~p~~~~~~~~la~~~~~----~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 111 (346)
+..++|+| +|+.|+..... .|.+|++.+++....... .........| +|+|+ +|+.++.++.|.
T Consensus 38 ~~~~~~Sp----dG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~-----~~~~~~~~~~--spdg~-~l~~~~~~~~l~ 105 (396)
T 3c5m_A 38 FYQKCFTQ----DGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEG-----KGDNTFGGFI--STDER-AFFYVKNELNLM 105 (396)
T ss_dssp TTSCCBCT----TSCEEEEEECTTSSCEEEEEETTTTEEEECCCS-----SCBCTTTCEE--CTTSS-EEEEEETTTEEE
T ss_pred eecCcCCC----CCCEEEEEEecCCCceEEEEECCCCcEEEeecC-----CCCccccceE--CCCCC-EEEEEEcCCcEE
Confidence 77889999 78887776543 388888776654332211 1111111344 49999 898988889999
Q ss_pred EEEccCcceeeeeccCCCceEE-------------------EEEeCCCCceEEEe-----eCCCCEEEEecCCCeeEEEe
Q 019117 112 VIDVSNEKLHKSFVGHGDSINE-------------------IRTQPLKPSLVVSA-----SKDESVRLWNVQTGICILIF 167 (346)
Q Consensus 112 iwd~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~ 167 (346)
+||+.+++.......+...... +.|+| +++.++.. ..+..|.+||+.+++.....
T Consensus 106 ~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~ 184 (396)
T 3c5m_A 106 KVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH 184 (396)
T ss_dssp EEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE
T ss_pred EEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCCcceEEEEECCCCcEEeec
Confidence 9999988766555544432222 34566 55555443 35678999999988766555
Q ss_pred cccCCCCcceEEEEecCCCCcEEEEEecC------CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeec--
Q 019117 168 AGAGGHRNEVLSVDFHPSDIYRIASCGMD------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH-- 239 (346)
Q Consensus 168 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 239 (346)
. +...+..+.|+|.++..|+..+.+ ..|.+||+.... ...+..+
T Consensus 185 ~----~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~------------------------~~~l~~~~~ 236 (396)
T 3c5m_A 185 Q----DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN------------------------VRKIKEHAE 236 (396)
T ss_dssp E----ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC------------------------CEESSCCCT
T ss_pred c----CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc------------------------eeEeeccCC
Confidence 3 667789999998445545544433 357788876521 1111111
Q ss_pred ccceEEEEec--CCEEEEEeec-----CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEee-cCCcceEEEEc-
Q 019117 240 SNYVDCNRWL--GDFILSKSVD-----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC-DFHYNAAAIGN- 310 (346)
Q Consensus 240 ~~~i~~~~~~--~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~~- 310 (346)
...+..+.|+ |++|+.++.+ +.|.+||+.+++. ..+..... .. +.|+| |+ +++++++
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-------~~l~~~~~----~~-~~~s~~dg--~~l~~~~~ 302 (396)
T 3c5m_A 237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN-------EEVMVMPP----CS-HLMSNFDG--SLMVGDGC 302 (396)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE-------EEEEECCS----EE-EEEECSSS--SEEEEEEC
T ss_pred CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe-------EEeeeCCC----CC-CCccCCCC--ceEEEecC
Confidence 2246677887 7777776654 5599999987652 11222221 22 88999 99 5666543
Q ss_pred ---------------CCCcEEEEEcCCCCcceeeeeee-----------eEEEEEecCCCCC
Q 019117 311 ---------------REGKIFVWELQSSPPVLIARLIC-----------FSLHVKYNPQSVY 346 (346)
Q Consensus 311 ---------------~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~~~~spdg~~ 346 (346)
.++.|++||+.+++......... ....+.|+|||++
T Consensus 303 ~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 364 (396)
T 3c5m_A 303 DAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDG 364 (396)
T ss_dssp CC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSE
T ss_pred CcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCe
Confidence 34789999999887544333332 1455789999863
No 168
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.81 E-value=9.6e-18 Score=140.04 Aligned_cols=255 Identities=8% Similarity=-0.047 Sum_probs=154.5
Q ss_pred cEEEEEecc-CceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEcc-CcceeeeeccC-CCceEEEE
Q 019117 59 RVTVYQCLE-GGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS-NEKLHKSFVGH-GDSINEIR 135 (346)
Q Consensus 59 ~v~i~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~-~~~v~~~~ 135 (346)
+|.+|++.. ...+..+..... .....+..+++ +|+|+ +|++++.+ .|.+|++. +++........ .+.+..++
T Consensus 15 ~i~~~~~d~~~g~l~~~~~~~~-~~~~~~~~~a~--spdg~-~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~ 89 (365)
T 1jof_A 15 AIFTVQFDDEKLTCKLIKRTEI-PQDEPISWMTF--DHERK-NIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRAND 89 (365)
T ss_dssp EEEEEEEETTTTEEEEEEEEEC-CTTCCCSEEEE--CTTSS-EEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGC
T ss_pred cEEEEEEECCCCCEEEeeEEcc-CCCCCCcEEEE--CCCCC-EEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEE
Confidence 488887643 223333332110 11223444555 49998 88888887 99999997 77654433211 12356689
Q ss_pred EeCCCCce--EEEee-------------CCCCEEEEecC-CCeeEEEeccc-CCCCcceEEEEecCCCCcEEEEEe-cCC
Q 019117 136 TQPLKPSL--VVSAS-------------KDESVRLWNVQ-TGICILIFAGA-GGHRNEVLSVDFHPSDIYRIASCG-MDN 197 (346)
Q Consensus 136 ~~~~~~~~--l~s~~-------------~d~~i~iwd~~-~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~-~d~ 197 (346)
|+| +++. +++++ .++.+.+|++. +++....+... ..+...+.+++|+| ++++++++. .++
T Consensus 90 ~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~ 167 (365)
T 1jof_A 90 ADT-NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTAN 167 (365)
T ss_dssp TTS-CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTT
T ss_pred ECC-CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCC
Confidence 999 7773 55553 68999999997 46554433310 01456789999999 787777665 467
Q ss_pred eEEEEEcc-ccceeeeeceeecCCCCCCCCccceeceEEEe--ecccceEEEEec--CCEEEEEee-cCeEEEEcCCC--
Q 019117 198 TVKIWSMK-EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS--VHSNYVDCNRWL--GDFILSKSV-DNEIVLWEPKM-- 269 (346)
Q Consensus 198 ~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~--~~~l~~~~~-d~~i~iwd~~~-- 269 (346)
.|.+||+. +.+. ..+..+. .|...+..++|+ |+++++++. ++.|.+|+++.
T Consensus 168 ~v~~~~~~~~g~~---------------------~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~ 226 (365)
T 1jof_A 168 KLWTHRKLASGEV---------------------ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT 226 (365)
T ss_dssp EEEEEEECTTSCE---------------------EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred EEEEEEECCCCCE---------------------EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCC
Confidence 99999997 4221 0111222 235568888898 778877765 78999998753
Q ss_pred CCCCCCCcccccccccc----CCCc------CeeEEE-EeecCCcceEEEEcCC-C-----cEEEEEcC-CCCcceeee-
Q 019117 270 KEQSPGEGTADILQKYP----VPEC------DIWFIK-FSCDFHYNAAAIGNRE-G-----KIFVWELQ-SSPPVLIAR- 330 (346)
Q Consensus 270 ~~~~~~~~~~~~~~~~~----~~~~------~v~~~~-~s~~~~~~~l~~~~~d-g-----~i~iwd~~-~~~~~~~~~- 330 (346)
++.... ...+..+. ++.. .+..++ |+||+ ++|+++..+ + .|.+|++. +++......
T Consensus 227 g~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG--~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~ 301 (365)
T 1jof_A 227 HMPVYT---HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG--KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL 301 (365)
T ss_dssp CCEEEE---EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS--SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE
T ss_pred CcEEEc---cceEEcCCCCcCCcccccccccccccEEEECCCC--CEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeee
Confidence 321000 00111121 1222 478899 99999 566555432 2 89999996 565433221
Q ss_pred e---eeeEEEEEecC---CCCC
Q 019117 331 L---ICFSLHVKYNP---QSVY 346 (346)
Q Consensus 331 ~---~~~~~~~~~sp---dg~~ 346 (346)
. ...+..++|+| ||+|
T Consensus 302 ~~~~~~~~~~~a~sp~~~dg~~ 323 (365)
T 1jof_A 302 SPTPTSGGHSNAVSPCPWSDEW 323 (365)
T ss_dssp EECSSCCTTCCCEEECTTCTTE
T ss_pred eecCCCCcccceecCCCcCCCE
Confidence 2 22356789999 7874
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.81 E-value=1.8e-17 Score=149.51 Aligned_cols=250 Identities=9% Similarity=-0.021 Sum_probs=163.6
Q ss_pred eecccCCCceEEEEEEeecCCCccEEEEE--cCCc-EEEEEeccCceeeeEeeeecCCCccceE---------EEEEEEc
Q 019117 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATV--GGNR-VTVYQCLEGGVIAALQSYVDEDKEESFY---------TVSWACN 94 (346)
Q Consensus 27 ~~~~~h~~~v~~~~~~p~~~~~~~~la~~--~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~---------~~~~~~~ 94 (346)
..+.+|...|..++|++ +.-++++. +.++ ..||....+.....+.. +...+. ...|+.+
T Consensus 17 ~~~~~~~~~~~~~~~s~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~S 87 (662)
T 3azo_A 17 ALVASRSGRPACVGAVG----DEVWWVAPRPAEAGRATLVRRRADGAEESALP-----APWNVRNRVFEYSGFPWAGVPR 87 (662)
T ss_dssp HHHHHTCSCCEEEEEET----TEEEEEEEETTTTTEEEEEEECTTSCEEESSC-----TTCCBCCCGGGTCCCCEEEECC
T ss_pred HHHhhcCCccceeEEcC----CeEEEEecCcccCCcEEEEEECCCCCcceeCC-----CCccccccccccCCccceeeee
Confidence 34678999999999997 55666666 4455 88898655544443332 222222 3445445
Q ss_pred CCCCcE-EEEee-cCCeEEEEEcc--C-cceeeeecc-----CCCceEEEEEeCCCCceEEEeeCC----------CCEE
Q 019117 95 VDGIPF-LVAGG-INGIIRVIDVS--N-EKLHKSFVG-----HGDSINEIRTQPLKPSLVVSASKD----------ESVR 154 (346)
Q Consensus 95 ~~~~~~-l~~~~-~dg~i~iwd~~--~-~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~d----------~~i~ 154 (346)
|||+ . |+.++ .+..|.++++. . ++ ...+.. |...+..++|+| +++.|++++.+ ..|+
T Consensus 88 PDg~-~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~ 164 (662)
T 3azo_A 88 PAGG-PLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLA 164 (662)
T ss_dssp SSSS-CEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEE
T ss_pred cCCC-eEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCceeEEE
Confidence 9999 5 55444 35667777765 2 33 344444 667889999999 88888888876 5899
Q ss_pred EEecCC------CeeEEEecccCCCCcceEEEEecCCCCcEEEEEecC--------CeEEEEEcc-ccceeeeeceeecC
Q 019117 155 LWNVQT------GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD--------NTVKIWSMK-EFWTYVEKSFTWTD 219 (346)
Q Consensus 155 iwd~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~-~~~~~~~~~~~~~~ 219 (346)
+||+.+ ++...... .+...+..++|+| ++++|+.++.+ ..|.+||+. +...
T Consensus 165 ~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~---------- 230 (662)
T 3azo_A 165 AVPLDGSAAADRSAVRELSD---DAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF---------- 230 (662)
T ss_dssp EEETTSTTTTCGGGSEESSC---SCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE----------
T ss_pred EEECCCCccccCCceeEEEe---cCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc----------
Confidence 999987 55443330 2456788899999 88888877654 379999998 3210
Q ss_pred CCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecC--eEEEEcCCCCCCCCCCccccccccccCCCc-----
Q 019117 220 LPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN--EIVLWEPKMKEQSPGEGTADILQKYPVPEC----- 290 (346)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----- 290 (346)
.........|...+..+.|+ |++++++..++ .|.+||+.+++.. .....+..
T Consensus 231 ----------~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~---------~l~~~~~~~~~p~ 291 (662)
T 3azo_A 231 ----------ADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT---------QLCRREEEFAGPL 291 (662)
T ss_dssp ----------EEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE---------ESSCCSSBSSCCC
T ss_pred ----------cccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee---------ecccccccccCcc
Confidence 01222333456788999998 77778887788 6666676555421 11111111
Q ss_pred ---CeeEEEEeecCCcceEEEEcCCCcEEEE--EcCCCC
Q 019117 291 ---DIWFIKFSCDFHYNAAAIGNREGKIFVW--ELQSSP 324 (346)
Q Consensus 291 ---~v~~~~~s~~~~~~~l~~~~~dg~i~iw--d~~~~~ 324 (346)
.+..++|++++ .++++++. +.++|| |+.+++
T Consensus 292 w~~~~~~~~~~~~~--~~~~~~~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 292 WTPGMRWFAPLANG--LIAVVHGK-GAAVLGILDPESGE 327 (662)
T ss_dssp CSTTCCSEEECTTS--CEEEEEBS-SSCEEEEEETTTTE
T ss_pred ccccCceEeEeCCC--EEEEEEEc-CccEEEEEECCCCc
Confidence 14568899988 68888888 999999 555554
No 170
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.77 E-value=1.8e-16 Score=130.68 Aligned_cols=265 Identities=12% Similarity=0.001 Sum_probs=168.8
Q ss_pred CceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117 34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 112 (346)
..|.+++|+| ++..++..+.++ ++.| .++....+.. +...+..++|. ++|+ +++++..++.|.+
T Consensus 6 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~--~~g~-l~~~~~~~~~i~~ 70 (333)
T 2dg1_A 6 QDLPTLFYSG----KSNSAVPIISESELQTI---TAEPWLEISK-----KGLQLEGLNFD--RQGQ-LFLLDVFEGNIFK 70 (333)
T ss_dssp CCCCBCCSCG----GGGCSSCCCCGGGSCEE---ECEEEEEEES-----SCCCEEEEEEC--TTSC-EEEEETTTCEEEE
T ss_pred cccceeeecC----CccceeEEeecccCccc---ccceeEEEec-----cCccccCcEEC--CCCC-EEEEECCCCEEEE
Confidence 3467788888 445555555454 7888 2344443332 33345566665 8898 8888888999999
Q ss_pred EEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCC----CCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCc
Q 019117 113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD----ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY 188 (346)
Q Consensus 113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 188 (346)
||..+++.......+...+.+++++| ++.++++...+ +.|.+||..+++....+... .+...+.+++++| ++.
T Consensus 71 ~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~i~~d~-~g~ 147 (333)
T 2dg1_A 71 INPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL-STAYCIDDMVFDS-KGG 147 (333)
T ss_dssp ECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS-SSCCCEEEEEECT-TSC
T ss_pred EeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC-ccCCcccceEECC-CCC
Confidence 99988876654445667899999999 77777777666 68999999877654333211 2456789999999 777
Q ss_pred EEEEEec------CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEE-EEeec
Q 019117 189 RIASCGM------DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL-SKSVD 259 (346)
Q Consensus 189 ~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~-~~~~d 259 (346)
++++... .+.|..+|....+ ...+..+...+..+.|+ ++.++ +.+.+
T Consensus 148 l~v~~~~~~~~~~~~~l~~~~~~~~~------------------------~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~ 203 (333)
T 2dg1_A 148 FYFTDFRGYSTNPLGGVYYVSPDFRT------------------------VTPIIQNISVANGIALSTDEKVLWVTETTA 203 (333)
T ss_dssp EEEEECCCBTTBCCEEEEEECTTSCC------------------------EEEEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred EEEEeccccccCCCceEEEEeCCCCE------------------------EEEeecCCCcccceEECCCCCEEEEEeCCC
Confidence 7776553 2455555544311 11122233446778887 56554 44568
Q ss_pred CeEEEEcCCCC-CCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee-----
Q 019117 260 NEIVLWEPKMK-EQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC----- 333 (346)
Q Consensus 260 ~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----- 333 (346)
+.|.+||+.+. ....... ......+..+ ..+..+++++++ .++++...++.|.+||. +++.+..+....
T Consensus 204 ~~i~~~d~~~~g~~~~~~~-~~~~~~~~~~-~~~~~i~~d~~G--~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~ 278 (333)
T 2dg1_A 204 NRLHRIALEDDGVTIQPFG-ATIPYYFTGH-EGPDSCCIDSDD--NLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGH 278 (333)
T ss_dssp TEEEEEEECTTSSSEEEEE-EEEEEECCSS-SEEEEEEEBTTC--CEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTC
T ss_pred CeEEEEEecCCCcCccccc-ceEEEecCCC-CCCCceEECCCC--CEEEEEcCCCEEEEECC-CCCEEEEEEcCCCcccc
Confidence 89999998642 2100000 0011112222 357789999998 56777767789999998 455444444432
Q ss_pred --eEEEEEecCCCC
Q 019117 334 --FSLHVKYNPQSV 345 (346)
Q Consensus 334 --~~~~~~~spdg~ 345 (346)
.+..++|+|||+
T Consensus 279 ~~~~~~~~~~~dg~ 292 (333)
T 2dg1_A 279 MLRSTHPQFIPGTN 292 (333)
T ss_dssp SCBCCEEEECTTSC
T ss_pred ccCcceEEECCCCC
Confidence 478899999974
No 171
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.76 E-value=6.1e-15 Score=121.03 Aligned_cols=253 Identities=6% Similarity=-0.081 Sum_probs=175.7
Q ss_pred CceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117 34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 112 (346)
.....+.+.. +.++++...++ |.+||..+++.+..+.. ......+++. ++++ ++++...++.|.+
T Consensus 44 ~~~~~i~~~~-----~~lyv~~~~~~~v~viD~~t~~~~~~i~~------~~~p~~i~~~--~~g~-lyv~~~~~~~v~~ 109 (328)
T 3dsm_A 44 DVAQSMVIRD-----GIGWIVVNNSHVIFAIDINTFKEVGRITG------FTSPRYIHFL--SDEK-AYVTQIWDYRIFI 109 (328)
T ss_dssp SCEEEEEEET-----TEEEEEEGGGTEEEEEETTTCCEEEEEEC------CSSEEEEEEE--ETTE-EEEEEBSCSEEEE
T ss_pred ccceEEEEEC-----CEEEEEEcCCCEEEEEECcccEEEEEcCC------CCCCcEEEEe--CCCe-EEEEECCCCeEEE
Confidence 4467787753 46666666545 99999999888777742 2345556665 7775 5555547899999
Q ss_pred EEccCcceeeeeccCC-----CceEEEEEeCCCCceEEEee-CCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCC
Q 019117 113 IDVSNEKLHKSFVGHG-----DSINEIRTQPLKPSLVVSAS-KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD 186 (346)
Q Consensus 113 wd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 186 (346)
||..+++....+.... .....+++ . ++.++++.. .++.|.++|+.+++.+..+. .......++++| +
T Consensus 110 iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~----~g~~p~~i~~~~-d 182 (328)
T 3dsm_A 110 INPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELT----IGIQPTSLVMDK-Y 182 (328)
T ss_dssp EETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEE----CSSCBCCCEECT-T
T ss_pred EECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEE----cCCCccceEEcC-C
Confidence 9999998877765433 14556777 3 555555554 48899999999999888876 334567889998 7
Q ss_pred CcEEEEEecC----------CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeec-ccceEEEEec--CCEE
Q 019117 187 IYRIASCGMD----------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH-SNYVDCNRWL--GDFI 253 (346)
Q Consensus 187 ~~~l~s~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~--~~~l 253 (346)
+++++++..+ +.|.++|..+.+ ....+... ......++++ ++.|
T Consensus 183 G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~-----------------------v~~~~~~~~g~~p~~la~~~d~~~l 239 (328)
T 3dsm_A 183 NKMWTITDGGYEGSPYGYEAPSLYRIDAETFT-----------------------VEKQFKFKLGDWPSEVQLNGTRDTL 239 (328)
T ss_dssp SEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE-----------------------EEEEEECCTTCCCEEEEECTTSCEE
T ss_pred CCEEEEECCCccCCccccCCceEEEEECCCCe-----------------------EEEEEecCCCCCceeEEEecCCCEE
Confidence 8877777654 789999998732 12222211 2356788888 6777
Q ss_pred EEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEE----cCCCcEEEEEcCCCCcceee
Q 019117 254 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG----NREGKIFVWELQSSPPVLIA 329 (346)
Q Consensus 254 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~ 329 (346)
.++.. .|.+||..+++... ...+.........++++|++. .++++. ..++.|.+||.. ++.+..+
T Consensus 240 yv~~~--~v~~~d~~t~~~~~-------~~~~~~~~~~p~gi~vdp~~g-~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 240 YWINN--DIWRMPVEADRVPV-------RPFLEFRDTKYYGLTVNPNNG-EVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp EEESS--SEEEEETTCSSCCS-------SCSBCCCSSCEEEEEECTTTC-CEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred EEEcc--EEEEEECCCCceee-------eeeecCCCCceEEEEEcCCCC-eEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 77654 89999998876311 011111135678899999553 566666 678999999998 8888888
Q ss_pred eeeeeEEEEEec
Q 019117 330 RLICFSLHVKYN 341 (346)
Q Consensus 330 ~~~~~~~~~~~s 341 (346)
.....+..++|-
T Consensus 309 ~~G~~P~~~~~~ 320 (328)
T 3dsm_A 309 YVGIIPGAFCWK 320 (328)
T ss_dssp EEEESEEEEEEE
T ss_pred EeccCcceEEEe
Confidence 777777877774
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.75 E-value=3.4e-16 Score=141.09 Aligned_cols=260 Identities=8% Similarity=-0.029 Sum_probs=154.8
Q ss_pred eecccCCCceE---------EEEEE--eecCCCccE-EEEEcCCc--EEEEEec-cC-ceeeeEeeeecCCCccceEEEE
Q 019117 27 NKLQEGKRPLY---------AVVFN--FIDSRYFNV-FATVGGNR--VTVYQCL-EG-GVIAALQSYVDEDKEESFYTVS 90 (346)
Q Consensus 27 ~~~~~h~~~v~---------~~~~~--p~~~~~~~~-la~~~~~~--v~i~~~~-~~-~~~~~~~~~~~~~~~~~v~~~~ 90 (346)
..+..|...+. ...|+ | +|+. |+.++... |.+++.. ++ .....+.......+...+..++
T Consensus 61 ~~l~~~~~~~~~~~~~~~~~~~~~~~SP----Dg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~ 136 (662)
T 3azo_A 61 ESALPAPWNVRNRVFEYSGFPWAGVPRP----AGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPV 136 (662)
T ss_dssp EESSCTTCCBCCCGGGTCCCCEEEECCS----SSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEE
T ss_pred ceeCCCCccccccccccCCccceeeeec----CCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcE
Confidence 34555655555 56666 7 6777 77766544 5555543 01 3333333211111344555566
Q ss_pred EEEcCCCCcEEEEeecC----------CeEEEEEccC------cceeeeec-cCCCceEEEEEeCCCCceEEEeeCC---
Q 019117 91 WACNVDGIPFLVAGGIN----------GIIRVIDVSN------EKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKD--- 150 (346)
Q Consensus 91 ~~~~~~~~~~l~~~~~d----------g~i~iwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d--- 150 (346)
|+ |||+ .|+.++.+ ..|.+||+.+ ++.. .+. .+...+..++|+| +++.|+.++.+
T Consensus 137 ~s--pDg~-~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~ 211 (662)
T 3azo_A 137 LL--PERG-EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPR 211 (662)
T ss_dssp EE--TTTT-EEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECT-TSSEEEEEEECTTC
T ss_pred EC--CCCC-EEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECC-CCCEEEEEECCCCC
Confidence 65 9999 88888776 5899999988 5543 444 5567788999999 88888877754
Q ss_pred -----CCEEEEecC-CC---eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCC--eEEEEEccccceeeeeceeecC
Q 019117 151 -----ESVRLWNVQ-TG---ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN--TVKIWSMKEFWTYVEKSFTWTD 219 (346)
Q Consensus 151 -----~~i~iwd~~-~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~ 219 (346)
..|.+||+. ++ +...... ++...+..++|+| ++++++++..++ .|.+||+...+......
T Consensus 212 ~~~~~~~i~~~d~~~~g~~~~~~~l~~---~~~~~~~~~~~sp-dg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~----- 282 (662)
T 3azo_A 212 MPWEGTELKTARVTEDGRFADTRTLLG---GPEEAIAQAEWAP-DGSLIVATDRTGWWNLHRVDPATGAATQLCR----- 282 (662)
T ss_dssp CTTTCEEEEEEEECTTSCEEEEEEEEE---ETTBCEEEEEECT-TSCEEEEECTTSSCEEEEECTTTCCEEESSC-----
T ss_pred CCCCCcEEEEEEECCCCcccccEEeCC---CCCceEcceEECC-CCeEEEEECCCCCeEEEEEECCCCceeeccc-----
Confidence 379999998 56 4333333 3578899999999 777888888888 55555554422100000
Q ss_pred CCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEE--cCCCCCCCCCCccccccccccCCCcCeeEE
Q 019117 220 LPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLW--EPKMKEQSPGEGTADILQKYPVPECDIWFI 295 (346)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 295 (346)
.... ...+ . -...+..+.|+ ++++++++. +.++|| |+.+++ +..+..+...+..+
T Consensus 283 ~~~~-----~~~p----~-w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~----------~~~l~~~~~~~~~~ 341 (662)
T 3azo_A 283 REEE-----FAGP----L-WTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE----------LVDAAGPWTEWAAT 341 (662)
T ss_dssp CSSB-----SSCC----C-CSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE----------EEECCSSCCEEEEE
T ss_pred cccc-----ccCc----c-ccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc----------EEEecCCCCeEEEE
Confidence 0000 0000 0 00013456665 678888888 999999 444332 34555566666655
Q ss_pred EEeecCCcceEEEEcCCC--cEEEEEcCCCCcc
Q 019117 296 KFSCDFHYNAAAIGNREG--KIFVWELQSSPPV 326 (346)
Q Consensus 296 ~~s~~~~~~~l~~~~~dg--~i~iwd~~~~~~~ 326 (346)
++++++..++++++.+. .|.+||+.+++..
T Consensus 342 -~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~ 373 (662)
T 3azo_A 342 -LTVSGTRAVGVAASPRTAYEVVELDTVTGRAR 373 (662)
T ss_dssp -EEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred -EecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence 25666434455555554 4666677677643
No 173
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.75 E-value=1.9e-16 Score=133.30 Aligned_cols=213 Identities=10% Similarity=-0.013 Sum_probs=144.4
Q ss_pred EEcCCCCcEEEEeec-CC--eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEec
Q 019117 92 ACNVDGIPFLVAGGI-NG--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA 168 (346)
Q Consensus 92 ~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 168 (346)
.++|||+ +|+.++. ++ .|.+||+.+++......++...+..+.|+| +++.|+.++.++.|++||+.+++....+.
T Consensus 42 ~~SpDg~-~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~g~~~~~~~ 119 (388)
T 3pe7_A 42 CFTRDGS-KLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSP-DDDALFYVKDGRNLMRVDLATLEENVVYQ 119 (388)
T ss_dssp CBCTTSC-EEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred cCCCCCC-EEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcC-CCCEEEEEeCCCeEEEEECCCCcceeeee
Confidence 3459999 7777776 66 488889999888777777766666788999 88999999999999999999988776665
Q ss_pred ccCCCCcceEEEE--ecCCCCcEEEEE----------------------ecCCeEEEEEccccceeeeeceeecCCCCCC
Q 019117 169 GAGGHRNEVLSVD--FHPSDIYRIASC----------------------GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF 224 (346)
Q Consensus 169 ~~~~~~~~v~~~~--~~~~~~~~l~s~----------------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 224 (346)
.+...+.... ++| ++.+++.. ..+..|.+||+.+.+
T Consensus 120 ---~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~---------------- 179 (388)
T 3pe7_A 120 ---VPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE---------------- 179 (388)
T ss_dssp ---CCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC----------------
T ss_pred ---chhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc----------------
Confidence 3455554443 477 77777642 234678889988732
Q ss_pred CCccceeceEEEeecccceEEEEecC---CEEEEEeec------CeEEEEcCCCCCCCCCCccccccccccCCC--cCee
Q 019117 225 PTKYVQFPVFIASVHSNYVDCNRWLG---DFILSKSVD------NEIVLWEPKMKEQSPGEGTADILQKYPVPE--CDIW 293 (346)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~v~ 293 (346)
...+..+...+..+.|++ +.|+....+ ..|.++|+...+ ...+..+. ..+.
T Consensus 180 --------~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~----------~~~l~~~~~~~~~~ 241 (388)
T 3pe7_A 180 --------STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN----------MRKVKTHAEGESCT 241 (388)
T ss_dssp --------EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC----------CEESCCCCTTEEEE
T ss_pred --------eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc----------eEEeeeCCCCcccc
Confidence 233445666778888864 566666543 378888876654 12222222 3577
Q ss_pred EEEEeecCCcceEEEEcC-CC----cEEEEEcCCCCcceeeeeeee------EEEEEecCCCCC
Q 019117 294 FIKFSCDFHYNAAAIGNR-EG----KIFVWELQSSPPVLIARLICF------SLHVKYNPQSVY 346 (346)
Q Consensus 294 ~~~~s~~~~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~------~~~~~~spdg~~ 346 (346)
..+|+||+ +.|+..+. ++ .|++||+.+++........+. ...+.|+|||++
T Consensus 242 ~~~~spdg--~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~ 303 (388)
T 3pe7_A 242 HEFWVPDG--SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSD 303 (388)
T ss_dssp EEEECTTS--SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECC
T ss_pred cceECCCC--CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCc
Confidence 88999999 44544332 22 399999999986554444431 112368898863
No 174
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.74 E-value=1.9e-15 Score=124.17 Aligned_cols=223 Identities=12% Similarity=0.038 Sum_probs=154.1
Q ss_pred cceEEEEEEEcCCCCcEEEEeecC------------------------CeEEEEEccCcceeeeec-cCCCceEEEEEeC
Q 019117 84 ESFYTVSWACNVDGIPFLVAGGIN------------------------GIIRVIDVSNEKLHKSFV-GHGDSINEIRTQP 138 (346)
Q Consensus 84 ~~v~~~~~~~~~~~~~~l~~~~~d------------------------g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~ 138 (346)
..+..+++. ++|+ ++++...+ +.|.+||..+++.+..+. ++-.....++++|
T Consensus 24 ~~v~~va~d--~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 24 GQVSGVALD--SKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT 100 (329)
T ss_dssp SCEEEEEEC--TTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT
T ss_pred CCceEEEEC--CCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC
Confidence 456666665 8998 77777766 479999998888776654 3445789999999
Q ss_pred CCCceEEEeeCCCCEEEEecCCCe-eEEEeccc------CCCCcceEEEEecCCCCcEEEEEe-cCCeEEEEEcccccee
Q 019117 139 LKPSLVVSASKDESVRLWNVQTGI-CILIFAGA------GGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTY 210 (346)
Q Consensus 139 ~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~ 210 (346)
+++++++...++.|++||..... .+..+... .++...+..++++|.++.++++.+ .++.|++||... .
T Consensus 101 -~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~-- 176 (329)
T 3fvz_A 101 -DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-K-- 176 (329)
T ss_dssp -TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-C--
T ss_pred -CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-C--
Confidence 78888888889999999986432 45554210 134457899999985677777776 689999999543 1
Q ss_pred eeeceeecCCCCCCCCccceeceEEEe----------ecccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCc
Q 019117 211 VEKSFTWTDLPSKFPTKYVQFPVFIAS----------VHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEG 277 (346)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 277 (346)
.+..+. .+-.....++++ +.++++...+++|++|+..+++
T Consensus 177 ---------------------~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~------ 229 (329)
T 3fvz_A 177 ---------------------FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE------ 229 (329)
T ss_dssp ---------------------EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC------
T ss_pred ---------------------EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc------
Confidence 111111 122336778886 4566666778999999998665
Q ss_pred cccccccc--cCCCcCeeEEEEee------cCCcceEEEEcCCCcEEEEEcCCCCcceeee----eeeeEEEEEecCCCC
Q 019117 278 TADILQKY--PVPECDIWFIKFSC------DFHYNAAAIGNREGKIFVWELQSSPPVLIAR----LICFSLHVKYNPQSV 345 (346)
Q Consensus 278 ~~~~~~~~--~~~~~~v~~~~~s~------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~~spdg~ 345 (346)
.+..+ ..+...+..++|+| ++ ...++...+..|++||+.+++.+..+. ....+..++++|||.
T Consensus 230 ---~~~~~~~~~~~~~~~~~~~~pg~~~~~~g--~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~ 304 (329)
T 3fvz_A 230 ---FVREIKHASFGRNVFAISYIPGFLFAVNG--KPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGT 304 (329)
T ss_dssp ---EEEEECCTTTTTCEEEEEEETTEEEEEEC--CCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSE
T ss_pred ---EEEEEeccccCCCcceeeecCCEEEEeCC--CEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCC
Confidence 33333 23445778889998 33 233333445689999999998766542 223478899999984
No 175
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.74 E-value=5.6e-15 Score=118.96 Aligned_cols=217 Identities=10% Similarity=0.030 Sum_probs=150.6
Q ss_pred cceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeec------cCCCceEEEEEeCCCCceEEEeeC-CCCEEEE
Q 019117 84 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV------GHGDSINEIRTQPLKPSLVVSASK-DESVRLW 156 (346)
Q Consensus 84 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~iw 156 (346)
.....+++. ++|. ++++...++.|.+||.. ++.+..+. ++...+..+++.+.++.++++... ++.|.+|
T Consensus 30 ~~p~~v~~~--~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 30 TEPSGVAVN--AQND-IIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp SCEEEEEEC--TTCC-EEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CCCceEEEC--CCCC-EEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 344555554 8888 88888889999999977 55555553 244578899995326666666543 7899999
Q ss_pred ecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE
Q 019117 157 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 236 (346)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (346)
| .+++.+..+.. .+...+.+++++| +++++++...++.|.+||.... .+..+
T Consensus 106 d-~~g~~~~~~~~--~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~------------------------~~~~~ 157 (286)
T 1q7f_A 106 N-QYGQFVRKFGA--TILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNGN------------------------VLHKF 157 (286)
T ss_dssp C-TTSCEEEEECT--TTCSCEEEEEECT-TSCEEEEETTTTEEEEECTTSC------------------------EEEEE
T ss_pred C-CCCcEEEEecC--ccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCCCC------------------------EEEEe
Confidence 9 56777776642 2446789999998 7888888778899999996541 11112
Q ss_pred e--ecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccC--CCcCeeEEEEeecCCcceEEEEc
Q 019117 237 S--VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV--PECDIWFIKFSCDFHYNAAAIGN 310 (346)
Q Consensus 237 ~--~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~l~~~~ 310 (346)
. .+...+..++++ ++++++...++.|++||.... .+..+.. +...+..+++++++ .++++..
T Consensus 158 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~----------~~~~~~~~g~~~~p~~i~~d~~G--~l~v~~~ 225 (286)
T 1q7f_A 158 GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ----------YLRQIGGEGITNYPIGVGINSNG--EILIADN 225 (286)
T ss_dssp ECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC----------EEEEESCTTTSCSEEEEEECTTC--CEEEEEC
T ss_pred CCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC----------EEEEEccCCccCCCcEEEECCCC--CEEEEeC
Confidence 1 233457888887 566666677999999997542 2233322 23568899999998 6777777
Q ss_pred CCC-cEEEEEcCCCCcceeeeeee---eEEEEEecCCCC
Q 019117 311 REG-KIFVWELQSSPPVLIARLIC---FSLHVKYNPQSV 345 (346)
Q Consensus 311 ~dg-~i~iwd~~~~~~~~~~~~~~---~~~~~~~spdg~ 345 (346)
.++ .|.+||.. ++.+..+.... .+..++++|+|+
T Consensus 226 ~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~ 263 (286)
T 1q7f_A 226 HNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGS 263 (286)
T ss_dssp SSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTE
T ss_pred CCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCc
Confidence 776 99999954 55444443322 267899999986
No 176
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.73 E-value=1.5e-14 Score=117.05 Aligned_cols=242 Identities=12% Similarity=-0.010 Sum_probs=157.1
Q ss_pred ecccCCCceEEEEEEeecCCCcc-EEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117 28 KLQEGKRPLYAVVFNFIDSRYFN-VFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (346)
Q Consensus 28 ~~~~h~~~v~~~~~~p~~~~~~~-~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 105 (346)
.+..+.....+++|+| +++ +++++..++ |..|+..++ ...+.. +...+..+++. ++|+ ++++..
T Consensus 22 ~l~~~~~~~eg~~~d~----~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~-----~~~~~~~l~~~--~dg~-l~v~~~ 87 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVP----ARSAVIFSDVRQNRTWAWSDDGQ--LSPEMH-----PSHHQNGHCLN--KQGH-LIACSH 87 (296)
T ss_dssp EEECCCSSEEEEEEEG----GGTEEEEEEGGGTEEEEEETTSC--EEEEES-----SCSSEEEEEEC--TTCC-EEEEET
T ss_pred EEecCCccccCCeEeC----CCCEEEEEeCCCCEEEEEECCCC--eEEEEC-----CCCCcceeeEC--CCCc-EEEEec
Confidence 3445666788999999 676 777776665 999997765 343332 34456656555 8998 777777
Q ss_pred cCCeEEEEEccCcceeeeeccC----CCceEEEEEeCCCCceEEE----ee-------------CCCCEEEEecCCCeeE
Q 019117 106 INGIIRVIDVSNEKLHKSFVGH----GDSINEIRTQPLKPSLVVS----AS-------------KDESVRLWNVQTGICI 164 (346)
Q Consensus 106 ~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s----~~-------------~d~~i~iwd~~~~~~~ 164 (346)
.++.|.+||..+++........ ...+..++++| ++.++++ |+ ..+.|..++.. ++.
T Consensus 88 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~- 164 (296)
T 3e5z_A 88 GLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL- 164 (296)
T ss_dssp TTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-
T ss_pred CCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-
Confidence 6789999999888754433221 23567899999 7888887 33 12455555554 443
Q ss_pred EEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE
Q 019117 165 LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD 244 (346)
Q Consensus 165 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (346)
..+. .+...+..++|+| +++.+++.+.++.|.+|++........ . ...+..+...+.
T Consensus 165 ~~~~---~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~-----------------~--~~~~~~~~~~p~ 221 (296)
T 3e5z_A 165 SAPI---RDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNARGETEY-----------------Q--GVHFTVEPGKTD 221 (296)
T ss_dssp EEEE---CCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSSSCEEE-----------------E--EEEECCSSSCCC
T ss_pred EEee---cCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcC-----------------C--CeEeeCCCCCCC
Confidence 3333 3666789999999 777777777889999999873110000 0 011122344456
Q ss_pred EEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEe-ecCCcceEEEEcCCCcEEEEEcC
Q 019117 245 CNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS-CDFHYNAAAIGNREGKIFVWELQ 321 (346)
Q Consensus 245 ~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~~~l~~~~~dg~i~iwd~~ 321 (346)
.++++ |++.++. ++.|.+||.. ++ .+..+..+.. +.+++|. |++ ..|.+++.+ .+.-++..
T Consensus 222 ~i~~d~~G~l~v~~--~~~v~~~~~~-g~---------~~~~~~~~~~-~~~~~f~~~d~--~~L~v~t~~-~l~~~~~~ 285 (296)
T 3e5z_A 222 GLRVDAGGLIWASA--GDGVHVLTPD-GD---------ELGRVLTPQT-TSNLCFGGPEG--RTLYMTVST-EFWSIETN 285 (296)
T ss_dssp SEEEBTTSCEEEEE--TTEEEEECTT-SC---------EEEEEECSSC-CCEEEEESTTS--CEEEEEETT-EEEEEECS
T ss_pred eEEECCCCCEEEEc--CCeEEEECCC-CC---------EEEEEECCCC-ceeEEEECCCC--CEEEEEcCC-eEEEEEcc
Confidence 67776 6655544 8899999986 33 4555666666 8999994 777 567776665 45556666
Q ss_pred CCCc
Q 019117 322 SSPP 325 (346)
Q Consensus 322 ~~~~ 325 (346)
+.+.
T Consensus 286 ~~~~ 289 (296)
T 3e5z_A 286 VRGL 289 (296)
T ss_dssp CCBC
T ss_pred cccc
Confidence 5543
No 177
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.73 E-value=4.6e-16 Score=140.77 Aligned_cols=246 Identities=10% Similarity=-0.031 Sum_probs=157.8
Q ss_pred ccCCCceEEEEEEeecCCCccEEEE-----EcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFAT-----VGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~-----~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 103 (346)
.+|...+..++||| +|++||. |+.+. |++||+.+++.+.. ... .......++|+ |||+ .|+.
T Consensus 117 ~~~~~~~~~~~~SP----DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~--~~~---~~~~~~~~~ws--pDg~-~l~~ 184 (695)
T 2bkl_A 117 KDGTVSLGTWAVSW----DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV--DVI---EGGKYATPKWT--PDSK-GFYY 184 (695)
T ss_dssp SSSCEEEEEEEECT----TSSEEEEEEEETTCSCCEEEEEETTTCCBCSS--CCB---SCCTTCCCEEC--TTSS-EEEE
T ss_pred cCCCEEEEEEEECC----CCCEEEEEECCCCCceEEEEEEECCCCCCcCC--ccc---CcccccceEEe--cCCC-EEEE
Confidence 35666789999999 7888884 33334 99999988875411 000 11111345665 9999 8888
Q ss_pred eecCCe-------------EEEEEccCcc----eeeeeccCCCceEEEEEeCCCCceEEEeeCCC----CEEEEecCCCe
Q 019117 104 GGINGI-------------IRVIDVSNEK----LHKSFVGHGDSINEIRTQPLKPSLVVSASKDE----SVRLWNVQTGI 162 (346)
Q Consensus 104 ~~~dg~-------------i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~----~i~iwd~~~~~ 162 (346)
++.+.. |++|++.+++ .+.....+...+..+.|+| ++++|+.++.++ .|.+|+..+++
T Consensus 185 ~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~ 263 (695)
T 2bkl_A 185 EWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKD 263 (695)
T ss_dssp EECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCSS
T ss_pred EEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCc
Confidence 887765 9999998876 3333344566889999999 777777766555 67777765554
Q ss_pred eEEEecccCCCCcceEEEEecCCCCcEEEEEe---cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeec
Q 019117 163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCG---MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 239 (346)
Q Consensus 163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (346)
... +. .+...+....++. +. +++... .++.|.+||+.+... .....+..+
T Consensus 264 ~~~-l~---~~~~~~~~~~~~~-g~-l~~~s~~~~~~~~l~~~d~~~~~~---------------------~~~~~l~~~ 316 (695)
T 2bkl_A 264 FRL-LV---KGVGAKYEVHAWK-DR-FYVLTDEGAPRQRVFEVDPAKPAR---------------------ASWKEIVPE 316 (695)
T ss_dssp CEE-EE---ECSSCCEEEEEET-TE-EEEEECTTCTTCEEEEEBTTBCSG---------------------GGCEEEECC
T ss_pred eEE-ee---cCCCceEEEEecC-Cc-EEEEECCCCCCCEEEEEeCCCCCc---------------------cCCeEEecC
Confidence 433 33 2445556666643 44 555554 257899999876321 001222222
Q ss_pred --ccceEEEEec-CCEEEEEeecCeEEEEcCCC-CCCCCCCccccccccccCC-CcCeeEEEEeecCCcceEE-EE---c
Q 019117 240 --SNYVDCNRWL-GDFILSKSVDNEIVLWEPKM-KEQSPGEGTADILQKYPVP-ECDIWFIKFSCDFHYNAAA-IG---N 310 (346)
Q Consensus 240 --~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~~l~-~~---~ 310 (346)
...+..+.++ +.++++...|+..+||.+.. ++ ....+..+ .+.+..++++|+++ .++ +. .
T Consensus 317 ~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~---------~~~~l~~~~~~~v~~~~~s~d~~--~l~~~~ss~~ 385 (695)
T 2bkl_A 317 DSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGK---------PVRTVQLPGVGAASNLMGLEDLD--DAYYVFTSFT 385 (695)
T ss_dssp CSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCC---------EEEECCCSSSSEECCCBSCTTCS--EEEEEEEETT
T ss_pred CCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCC---------eeEEecCCCCeEEEEeecCCCCC--EEEEEEcCCC
Confidence 3456777777 66778888899988886652 22 23334443 45677788899884 444 32 3
Q ss_pred CCCcEEEEEcCCCCcc
Q 019117 311 REGKIFVWELQSSPPV 326 (346)
Q Consensus 311 ~dg~i~iwd~~~~~~~ 326 (346)
..+.|++||+.+++..
T Consensus 386 ~P~~v~~~d~~~g~~~ 401 (695)
T 2bkl_A 386 TPRQIYKTSVSTGKSE 401 (695)
T ss_dssp EEEEEEEEETTTCCEE
T ss_pred CCCEEEEEECCCCcEE
Confidence 4578999999988743
No 178
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.73 E-value=1.3e-16 Score=145.44 Aligned_cols=224 Identities=10% Similarity=0.091 Sum_probs=145.4
Q ss_pred EEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCc-----eEEEEEeCCCCceEEEeeCC---------CC
Q 019117 87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDS-----INEIRTQPLKPSLVVSASKD---------ES 152 (346)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~l~s~~~d---------~~ 152 (346)
..+.|+ |+|+ +++++ |+.|++||+.+++....+.+|... ...+.|+| +++.|+.++.+ +.
T Consensus 20 ~~~~w~--~dg~-~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 20 YSLRWI--SDHE-YLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCEEEC--SSSE-EEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEE
T ss_pred cccEEC--CCCc-EEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECC-CCCEEEEEECCeeeEEEccceE
Confidence 346666 9998 88886 899999999999987777776542 24588999 88888888876 55
Q ss_pred EEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceec
Q 019117 153 VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP 232 (346)
Q Consensus 153 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (346)
+.+||+.+++... +. .+...+...+|+| +++.|+.+ .++.|.+||+.......... . ...
T Consensus 94 ~~~~d~~~~~~~~-l~---~~~~~~~~~~~SP-dG~~la~~-~~~~i~~~~~~~~~~~~lt~---~-----------g~~ 153 (740)
T 4a5s_A 94 YDIYDLNKRQLIT-EE---RIPNNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNLPSYRITW---T-----------GKE 153 (740)
T ss_dssp EEEEETTTTEECC-SS---CCCTTEEEEEECS-STTCEEEE-ETTEEEEESSTTSCCEECCS---C-----------CBT
T ss_pred EEEEECCCCcEEE-cc---cCCCcceeeEECC-CCCEEEEE-ECCeEEEEECCCCceEEEcC---C-----------CCc
Confidence 6799999987654 43 5778899999999 88878777 47899999997743211000 0 000
Q ss_pred eEEEeeccc---------ceEEEEec--CCEEEEEeecC------------------------------------eEEEE
Q 019117 233 VFIASVHSN---------YVDCNRWL--GDFILSKSVDN------------------------------------EIVLW 265 (346)
Q Consensus 233 ~~~~~~~~~---------~i~~~~~~--~~~l~~~~~d~------------------------------------~i~iw 265 (346)
...+.++.+ ....+.|+ |++|+.++.|. +|++|
T Consensus 154 ~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~ 233 (740)
T 4a5s_A 154 DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV 233 (740)
T ss_dssp TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred cceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEE
Confidence 011122221 12346676 67777765432 46777
Q ss_pred cCCC---CCCCCCCcccccccccc------CCCcCeeEEEEeecCCcceEEEE----cCCCcEEEEEcCCCC----c---
Q 019117 266 EPKM---KEQSPGEGTADILQKYP------VPECDIWFIKFSCDFHYNAAAIG----NREGKIFVWELQSSP----P--- 325 (346)
Q Consensus 266 d~~~---~~~~~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~~~l~~~----~~dg~i~iwd~~~~~----~--- 325 (346)
|+.+ ++.. ....+. .+...+..++|+||+ ++++.. +.+..|++||+.+++ .
T Consensus 234 d~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~wspdg--~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~ 304 (740)
T 4a5s_A 234 NTDSLSSVTNA-------TSIQITAPASMLIGDHYLCDVTWATQE--RISLQWLRRIQNYSVMDICDYDESSGRWNCLVA 304 (740)
T ss_dssp ETTSCCSSSCC-------CEEEECCCHHHHTSCEEEEEEEEEETT--EEEEEEEESSTTEEEEEEEEEETTTTEEEECGG
T ss_pred ECCCCCCCCcc-------eEEEecCCccCCCCCeEEEEEEEeCCC--eEEEEEeCCCCCEEEEEEEECCCCccccceeEE
Confidence 7776 4210 011111 356678999999999 544443 234579999999987 1
Q ss_pred ceee--eeeeeE-----EEEEecCCCC
Q 019117 326 VLIA--RLICFS-----LHVKYNPQSV 345 (346)
Q Consensus 326 ~~~~--~~~~~~-----~~~~~spdg~ 345 (346)
.... ...+.+ ....|||||+
T Consensus 305 ~~l~~~~~~~~v~~~~~~~p~fspDG~ 331 (740)
T 4a5s_A 305 RQHIEMSTTGWVGRFRPSEPHFTLDGN 331 (740)
T ss_dssp GCEEEECSSSCSSSSSCCCCEECTTSS
T ss_pred EEeeeccCCceEccCcCCCceEcCCCC
Confidence 1111 112222 2688999997
No 179
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.72 E-value=3.8e-14 Score=116.74 Aligned_cols=242 Identities=10% Similarity=0.013 Sum_probs=151.7
Q ss_pred eeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117 26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (346)
Q Consensus 26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 104 (346)
...+..+...+.+++|+| ++++++++..++ |.+||..+++....... +...+..+++. ++|+ ++++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~----~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~-----~~~~~~~i~~~--~dg~-l~v~~ 104 (333)
T 2dg1_A 37 WLEISKKGLQLEGLNFDR----QGQLFLLDVFEGNIFKINPETKEIKRPFVS-----HKANPAAIKIH--KDGR-LFVCY 104 (333)
T ss_dssp EEEEESSCCCEEEEEECT----TSCEEEEETTTCEEEEECTTTCCEEEEEEC-----SSSSEEEEEEC--TTSC-EEEEE
T ss_pred eEEEeccCccccCcEECC----CCCEEEEECCCCEEEEEeCCCCcEEEEeeC-----CCCCcceEEEC--CCCc-EEEEe
Confidence 344566777789999998 678888877666 99999876654433221 34567667665 8898 77776
Q ss_pred ecC----CeEEEEEccCcceeeeec--cCCCceEEEEEeCCCCceEEEeeC------CCCEEEEecCCCeeEEEecccCC
Q 019117 105 GIN----GIIRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASK------DESVRLWNVQTGICILIFAGAGG 172 (346)
Q Consensus 105 ~~d----g~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~ 172 (346)
..+ +.|.+||..+++....+. .+...+.+++++| ++.++++... .+.|..+|...++......
T Consensus 105 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---- 179 (333)
T 2dg1_A 105 LGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ---- 179 (333)
T ss_dssp CTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE----
T ss_pred CCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEeec----
Confidence 655 689999988776543332 2445789999999 7777776553 2456666665444433222
Q ss_pred CCcceEEEEecCCCCc-EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--
Q 019117 173 HRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-- 249 (346)
Q Consensus 173 ~~~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 249 (346)
....+..++|+| +++ ++++...++.|.+||+......... .. .........+ ..+..+.++
T Consensus 180 ~~~~~~~i~~~~-dg~~l~v~~~~~~~i~~~d~~~~g~~~~~-~~-------------~~~~~~~~~~-~~~~~i~~d~~ 243 (333)
T 2dg1_A 180 NISVANGIALST-DEKVLWVTETTANRLHRIALEDDGVTIQP-FG-------------ATIPYYFTGH-EGPDSCCIDSD 243 (333)
T ss_dssp EESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSSSEEE-EE-------------EEEEEECCSS-SEEEEEEEBTT
T ss_pred CCCcccceEECC-CCCEEEEEeCCCCeEEEEEecCCCcCccc-cc-------------ceEEEecCCC-CCCCceEECCC
Confidence 334578999999 766 4555566889999998641100000 00 0000011111 356677887
Q ss_pred CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCC------cCeeEEEEeecCCcceEEEEcCC
Q 019117 250 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE------CDIWFIKFSCDFHYNAAAIGNRE 312 (346)
Q Consensus 250 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~~~l~~~~~d 312 (346)
|+++++...++.|.+||.. ++ .+..+..+. ..+.+++|+||+ ..|+.++.+
T Consensus 244 G~l~v~~~~~~~v~~~d~~-g~---------~~~~~~~~~~~~g~~~~~~~~~~~~dg--~~L~v~~~~ 300 (333)
T 2dg1_A 244 DNLYVAMYGQGRVLVFNKR-GY---------PIGQILIPGRDEGHMLRSTHPQFIPGT--NQLIICSND 300 (333)
T ss_dssp CCEEEEEETTTEEEEECTT-SC---------EEEEEECTTGGGTCSCBCCEEEECTTS--CEEEEEEEC
T ss_pred CCEEEEEcCCCEEEEECCC-CC---------EEEEEEcCCCccccccCcceEEECCCC--CEEEEEeCc
Confidence 6777766678899999984 33 233333322 268899999987 345444443
No 180
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.72 E-value=4.2e-15 Score=134.89 Aligned_cols=244 Identities=9% Similarity=0.031 Sum_probs=158.3
Q ss_pred cCCCceEEEEEEeecCCCccEEEEEcC----C--cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117 31 EGKRPLYAVVFNFIDSRYFNVFATVGG----N--RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (346)
Q Consensus 31 ~h~~~v~~~~~~p~~~~~~~~la~~~~----~--~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 104 (346)
+|...+..++||| +|++||.+.. + .|++||+.+++....... ...+..++|+ |||+ .|+.+
T Consensus 122 ~~~~~~~~~~~SP----Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~------~~~~~~~~ws--pDg~-~l~~~ 188 (710)
T 2xdw_A 122 DGTVALRGYAFSE----DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE------RVKFSCMAWT--HDGK-GMFYN 188 (710)
T ss_dssp TSCEEEEEEEECT----TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE------EECSCCEEEC--TTSS-EEEEE
T ss_pred CCCEEEEEEEECC----CCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc------CcccceEEEE--eCCC-EEEEE
Confidence 4555688999999 7888886643 2 499999988876553221 1123446666 9999 88887
Q ss_pred ecCCe----------------EEEEEccCccee--e--eeccCCCceEEEEEeCCCCceEEEeeC-----CCCEEEEecC
Q 019117 105 GINGI----------------IRVIDVSNEKLH--K--SFVGHGDSINEIRTQPLKPSLVVSASK-----DESVRLWNVQ 159 (346)
Q Consensus 105 ~~dg~----------------i~iwd~~~~~~~--~--~~~~~~~~v~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~ 159 (346)
+.++. |.+|++.+++.. . ....|...+..+.|+| ++++|+.++. +..|.+||+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~ 267 (710)
T 2xdw_A 189 AYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQ 267 (710)
T ss_dssp ECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGG
T ss_pred EECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECc
Confidence 77665 999999887632 2 2233556688999999 7777776654 5689999997
Q ss_pred C------Ce-eEEEecccCCCCcceEEEEecCCCCcEEE-EEecC---CeEEEEEccccceeeeeceeecCCCCCCCCcc
Q 019117 160 T------GI-CILIFAGAGGHRNEVLSVDFHPSDIYRIA-SCGMD---NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY 228 (346)
Q Consensus 160 ~------~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (346)
+ +. ....+. .+...+.. .|+| ++..|+ .+..+ +.|.+||+.....
T Consensus 268 ~~~~~~~~~~~~~~l~---~~~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~------------------- 323 (710)
T 2xdw_A 268 QESNGITGILKWVKLI---DNFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEE------------------- 323 (710)
T ss_dssp GSSSSSCSSCCCEEEE---CSSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCG-------------------
T ss_pred ccccccCCccceEEee---CCCCcEEE-EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCc-------------------
Confidence 6 43 344454 35555554 4777 555444 44333 3699999876310
Q ss_pred ceeceEEEeeccc--ceEEEEec-C-CEEEEEeecCe--EEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCC
Q 019117 229 VQFPVFIASVHSN--YVDCNRWL-G-DFILSKSVDNE--IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH 302 (346)
Q Consensus 229 ~~~~~~~~~~~~~--~i~~~~~~-~-~~l~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 302 (346)
.....+..|.. .+..+.|. + .++++...|+. |.+|++.+++ .+..+..+.+.+..++++|++.
T Consensus 324 --~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~---------~~~~l~~~~~~v~~~~~s~d~~ 392 (710)
T 2xdw_A 324 --SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA---------LLKIFPLEVGSVVGYSGQKKDT 392 (710)
T ss_dssp --GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC---------EEEEECCCSSEEEEEECCTTCS
T ss_pred --ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC---------EEEecCCCCceEEEEecCCCCC
Confidence 01223333433 57778887 4 46667777775 5566765554 3455555667788899999884
Q ss_pred cceEEEEc---CCCcEEEEEcCCCC
Q 019117 303 YNAAAIGN---REGKIFVWELQSSP 324 (346)
Q Consensus 303 ~~~l~~~~---~dg~i~iwd~~~~~ 324 (346)
.++++.+ ..+.|++||+.+++
T Consensus 393 -~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 393 -EIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp -EEEEEEECSSCCCEEEEEETTSSS
T ss_pred -EEEEEEeCCCCCCEEEEEECCCCc
Confidence 2333322 45789999998877
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.72 E-value=7e-15 Score=121.81 Aligned_cols=219 Identities=11% Similarity=0.017 Sum_probs=141.8
Q ss_pred EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC---C--eEEEEEccCcceeeeeccCCCceEEE
Q 019117 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN---G--IIRVIDVSNEKLHKSFVGHGDSINEI 134 (346)
Q Consensus 60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d---g--~i~iwd~~~~~~~~~~~~~~~~v~~~ 134 (346)
|.+|++.+++... + ..+...+|+ |||+ .|+..+.+ + .|.+|++.+++.......+ . +..+
T Consensus 45 l~~~d~~~~~~~~-l---------~~~~~~~~S--pDg~-~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~ 109 (347)
T 2gop_A 45 IVIENLKNNARRF-I---------ENATMPRIS--PDGK-KIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSL 109 (347)
T ss_dssp EEEEETTTCCEEE-E---------ESCEEEEEC--TTSS-EEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEE
T ss_pred EEEEeCCCCceEE-c---------ccCCCeEEC--CCCC-EEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccce
Confidence 8899987765422 2 223445554 9999 77776643 3 4778888887765554433 3 9999
Q ss_pred EEeCCCCceEEEeeC---------------------------CCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117 135 RTQPLKPSLVVSASK---------------------------DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI 187 (346)
Q Consensus 135 ~~~~~~~~~l~s~~~---------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 187 (346)
+|+| +++.|+.++. ...|.+||+.+++.+..+. . . .+..++|+| ++
T Consensus 110 ~wsp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~---~-~-~~~~~~~sp-dg 182 (347)
T 2gop_A 110 EWNE-DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE---K-P-RFSSGIWHR-DK 182 (347)
T ss_dssp EECT-TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEE---E-E-TTCEEEEET-TE
T ss_pred eECC-CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeec---C-C-CcccccCCC-Ce
Confidence 9999 7777777653 2579999999888756665 2 3 788999999 77
Q ss_pred cEEEEEecCC-------eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeec-
Q 019117 188 YRIASCGMDN-------TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVD- 259 (346)
Q Consensus 188 ~~l~s~~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d- 259 (346)
+++++..++ ...+|.+.... ...+..+ ..+..+..+|++|+.++.+
T Consensus 183 -~~~~~~~~~~~~~~~~~~~l~~~d~~~------------------------~~~l~~~-~~~~~~spdg~~l~~~~~~~ 236 (347)
T 2gop_A 183 -IVVNVPHREIIPQYFKFWDIYIWEDGK------------------------EEKMFEK-VSFYAVDSDGERILLYGKPE 236 (347)
T ss_dssp -EEEEEECCCSSCCSSCCEEEEEEETTE------------------------EEEEEEE-ESEEEEEECSSCEEEEECCS
T ss_pred -EEEEEecccccccccccccEEEeCCCc------------------------eEEeccC-cceeeECCCCCEEEEEEccc
Confidence 777776542 34555444311 1122222 3444443347777776644
Q ss_pred -------CeEEEEcCCCCCCCCCCccccccccccCCCcCeeE-EEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeee
Q 019117 260 -------NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWF-IKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL 331 (346)
Q Consensus 260 -------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 331 (346)
..|.+|| +++ .......+...+.. +.|+ |+ ++++++.++.++|| +.+++.......
T Consensus 237 ~~~~~~~~~l~~~d--~~~---------~~~l~~~~~~~~~~~~~~s-dg---~~~~~~~~~~~~l~-~~~g~~~~~~~~ 300 (347)
T 2gop_A 237 KKYMSEHNKLYIYD--GKE---------VMGILDEVDRGVGQAKIKD-GK---VYFTLFEEGSVNLY-IWDGEIKPIAKG 300 (347)
T ss_dssp SSCCCSSCEEEEEC--SSC---------EEESSTTCCSEEEEEEEET-TE---EEEEEEETTEEEEE-EESSSEEEEECS
T ss_pred cCCccccceEEEEC--CCc---------eEeccccCCcccCCccEEc-Cc---EEEEEecCCcEEEE-EcCCceEEEecC
Confidence 3688888 333 22223344566775 8898 65 78888899999999 886654444434
Q ss_pred eeeEEEEEecC
Q 019117 332 ICFSLHVKYNP 342 (346)
Q Consensus 332 ~~~~~~~~~sp 342 (346)
.+.+..+.|+|
T Consensus 301 ~~~v~~~~~s~ 311 (347)
T 2gop_A 301 RHWIMGFDVDE 311 (347)
T ss_dssp SSEEEEEEESS
T ss_pred CCeEEeeeeeC
Confidence 55678888887
No 182
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.72 E-value=2.8e-15 Score=124.65 Aligned_cols=253 Identities=13% Similarity=0.032 Sum_probs=157.0
Q ss_pred cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee----------cCCeEEEEEccCcceeeeeccC-
Q 019117 59 RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG----------INGIIRVIDVSNEKLHKSFVGH- 127 (346)
Q Consensus 59 ~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~- 127 (346)
.|.+||..+++.+..+.. ...+ .+.++|+|+ +++++. .++.|.+||..+.+.+..+...
T Consensus 32 ~v~v~D~~t~~~~~~i~~-----g~~p----~i~~spdg~-~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~ 101 (361)
T 2oiz_A 32 RVHVYDYTNGKFLGMVPT-----AFNG----HVQVSNDGK-KIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP 101 (361)
T ss_dssp EEEEEETTTCCEEEEEEC-----CEEE----EEEECTTSS-EEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT
T ss_pred eEEEEECCCCeEEEEecC-----CCCC----ceEECCCCC-EEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc
Confidence 499999888877665542 1111 345569999 887775 3678999999998888777642
Q ss_pred -----CCceEEEEEeCCCCceEEEeeC--CCCEEEEecCCCeeEEE-ecccCCCCcceEEEEecCCCCcEEEEEecCCeE
Q 019117 128 -----GDSINEIRTQPLKPSLVVSASK--DESVRLWNVQTGICILI-FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTV 199 (346)
Q Consensus 128 -----~~~v~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 199 (346)
......++++| ++++|+++.. +++|.+||+.+++.+.. +. ..+. ..+.+.|.+...+++.+.||.+
T Consensus 102 ~~~~~g~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~----~~~~-~~v~~~p~~~~~~~~~~~dg~~ 175 (361)
T 2oiz_A 102 KRVQGLNYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDYVEDVTA----AAGC-WSVIPQPNRPRSFMTICGDGGL 175 (361)
T ss_dssp TBCCBCCCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEEEEEEGG----GTTE-EEEEECTTSSSEEEEEETTSSE
T ss_pred cccccCCCcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcEEEEEec----CCCc-ceeEEcCCCCeeEEEECCCCcE
Confidence 24567899999 7888887763 68999999999998887 65 2222 2355677455788888999999
Q ss_pred EEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE-EEEecCCEEEEEeecCeEEEEcCCCCCCCCCCcc
Q 019117 200 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD-CNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGT 278 (346)
Q Consensus 200 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 278 (346)
.+|++.......... . . .. .+......+. .....+..++..+.++.|.++|+......... .
T Consensus 176 ~~v~~~~~g~~~~~~-~-~--~~------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~-~ 238 (361)
T 2oiz_A 176 LTINLGEDGKVASQS-R-S--KQ------------MFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDG-P 238 (361)
T ss_dssp EEEEECTTSSEEEEE-E-C--CC------------CSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEE-E
T ss_pred EEEEECCCCcEeeec-c-c--cc------------eEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecc-c
Confidence 999986511111000 0 0 00 0000000000 00111455666677899999998754311000 0
Q ss_pred ccccc----cccCCCcCeeEEEEeecCCcceEEEEc----------CCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCC
Q 019117 279 ADILQ----KYPVPECDIWFIKFSCDFHYNAAAIGN----------REGKIFVWELQSSPPVLIARLICFSLHVKYNPQS 344 (346)
Q Consensus 279 ~~~~~----~~~~~~~~v~~~~~s~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg 344 (346)
..... ...........++|+|++. .++++.. ..+.|.+||+.+++.+....... +..++|+|||
T Consensus 239 ~~~~~~~~~~~~~~p~g~~~~a~~~dg~-~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg 316 (361)
T 2oiz_A 239 WSLLNDEDKAKNWVPGGYNLVGLHRASG-RMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQR 316 (361)
T ss_dssp EESCCHHHHHTTCEECCSSCEEEETTTT-EEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTT
T ss_pred ccccCccccccccccCCeeEEEEecCCC-eEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCC
Confidence 00000 0000011222378999984 3333332 13589999999998877777777 8999999999
Q ss_pred CC
Q 019117 345 VY 346 (346)
Q Consensus 345 ~~ 346 (346)
++
T Consensus 317 ~~ 318 (361)
T 2oiz_A 317 NL 318 (361)
T ss_dssp TE
T ss_pred CE
Confidence 74
No 183
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.71 E-value=5.3e-15 Score=118.05 Aligned_cols=239 Identities=9% Similarity=-0.071 Sum_probs=155.7
Q ss_pred ceEEEEEEeecCCCccEEE-EEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117 35 PLYAVVFNFIDSRYFNVFA-TVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (346)
Q Consensus 35 ~v~~~~~~p~~~~~~~~la-~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 112 (346)
...+++++| ++.+++ +...++ |.+|+..+.... .+. ......+..+++. ++|+ ++++.. ++.|.+
T Consensus 25 ~p~~i~~~~----~g~l~v~~~~~~~~i~~~~~~~~~~~-~~~----~~~~~~p~~i~~~--~~g~-l~v~~~-~~~i~~ 91 (270)
T 1rwi_B 25 SPSGVAVDS----AGNVYVTSEGMYGRVVKLATGSTGTT-VLP----FNGLYQPQGLAVD--GAGT-VYVTDF-NNRVVT 91 (270)
T ss_dssp CEEEEEECT----TCCEEEEECSSSCEEEEECC-----E-ECC----CCSCCSCCCEEEC--TTCC-EEEEET-TTEEEE
T ss_pred CccceEECC----CCCEEEEccCCCCcEEEecCCCcccc-eEe----eCCcCCcceeEEC--CCCC-EEEEcC-CCEEEE
Confidence 678899988 678777 534444 999986543321 111 1122334445554 8887 666665 889999
Q ss_pred EEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEE
Q 019117 113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS 192 (346)
Q Consensus 113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 192 (346)
||................+..+++.+ ++.++++...++.|.+|+..+........ .....+.+++++| +++++++
T Consensus 92 ~d~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~---~~~~~p~~i~~~~-~g~l~v~ 166 (270)
T 1rwi_B 92 LAAGSNNQTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPF---TGLNDPDGVAVDN-SGNVYVT 166 (270)
T ss_dssp ECTTCSCCEECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCC---CSCCSCCCEEECT-TCCEEEE
T ss_pred EeCCCceEeeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeEeecc---ccCCCceeEEEeC-CCCEEEE
Confidence 99876543322222335789999999 77777777778899999865544332221 2334678999998 7787777
Q ss_pred EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCC
Q 019117 193 CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMK 270 (346)
Q Consensus 193 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~ 270 (346)
...++.|.+||...... ......+...+..++++ |.++++...++.|.+|+....
T Consensus 167 ~~~~~~i~~~~~~~~~~-----------------------~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 167 DTDNNRVVKLEAESNNQ-----------------------VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST 223 (270)
T ss_dssp EGGGTEEEEECTTTCCE-----------------------EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred ECCCCEEEEEecCCCce-----------------------EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence 77788999999876221 00011122456778887 566666667889999998764
Q ss_pred CCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCc
Q 019117 271 EQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP 325 (346)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~ 325 (346)
.. ......+...+.++++++++ .++++...++.|+++++...+.
T Consensus 224 ~~---------~~~~~~~~~~p~~i~~~~~g--~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 224 TS---------TVLPFTGLNTPLAVAVDSDR--TVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CC---------EECCCCSCSCEEEEEECTTC--CEEEEEGGGTEEEEECCCGGGS
T ss_pred cc---------eeeccCCCCCceeEEECCCC--CEEEEECCCCEEEEEcCCCccc
Confidence 31 11111223468899999998 6888888999999999887653
No 184
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.70 E-value=5e-13 Score=108.13 Aligned_cols=262 Identities=10% Similarity=-0.033 Sum_probs=171.1
Q ss_pred cccCCCceEEEEEEeecCCCccEEEEEcCC-cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGN-RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (346)
Q Consensus 29 ~~~h~~~v~~~~~~p~~~~~~~~la~~~~~-~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 107 (346)
+..+...+.++++.| ++.++++...+ +|.+||.. +. ...+. .......+..+++. ++|. ++++...+
T Consensus 10 ~~~~~~~~~~i~~d~----~g~l~v~~~~~~~v~~~d~~-~~-~~~~~---~~~~~~~~~~i~~~--~~g~-l~v~~~~~ 77 (299)
T 2z2n_A 10 LTNQDTGPYGITVSD----KGKVWITQHKANMISCINLD-GK-ITEYP---LPTPDAKVMCLTIS--SDGE-VWFTENAA 77 (299)
T ss_dssp CCSSSCCEEEEEECT----TSCEEEEETTTTEEEEECTT-CC-EEEEE---CSSTTCCEEEEEEC--TTSC-EEEEETTT
T ss_pred CCCcCCCccceEECC----CCCEEEEecCCCcEEEEcCC-CC-eEEec---CCcccCceeeEEEC--CCCC-EEEeCCCC
Confidence 345567899999998 67888877644 49999976 43 22222 11133456556554 8888 77776668
Q ss_pred CeEEEEEccCcce-eeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCC
Q 019117 108 GIIRVIDVSNEKL-HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD 186 (346)
Q Consensus 108 g~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 186 (346)
+.|..||.. ++. ...+......+..+++.+ ++.++++...++.|.+||. +++....... .....+.++++++ +
T Consensus 78 ~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~--~~~~~~~~i~~~~-~ 151 (299)
T 2z2n_A 78 NKIGRITKK-GIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELP--NKGSYPSFITLGS-D 151 (299)
T ss_dssp TEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECS--STTCCEEEEEECT-T
T ss_pred CeEEEECCC-CcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCC--CCCCCCceEEEcC-C
Confidence 899999976 332 222223456789999998 7777777777889999998 5554332211 2456789999998 7
Q ss_pred CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEE
Q 019117 187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVL 264 (346)
Q Consensus 187 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~i 264 (346)
+.++++...++.|..||. +... ...........+..+.++ +++.++...++.|.+
T Consensus 152 g~l~v~~~~~~~i~~~~~-~g~~----------------------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 208 (299)
T 2z2n_A 152 NALWFTENQNNAIGRITE-SGDI----------------------TEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGR 208 (299)
T ss_dssp SCEEEEETTTTEEEEECT-TCCE----------------------EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred CCEEEEeCCCCEEEEEcC-CCcE----------------------EEeeCCCCCCcceeEEECCCCCEEEEccCCceEEE
Confidence 787777777789999998 4211 001111233456677776 666666656889999
Q ss_pred EcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee---eeEEEEEec
Q 019117 265 WEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI---CFSLHVKYN 341 (346)
Q Consensus 265 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~s 341 (346)
||. +++. .......+...+.++++++++ .+.++...++.|..||. +++ ...+... ..+.++++
T Consensus 209 ~~~-~g~~--------~~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~- 274 (299)
T 2z2n_A 209 ITT-SGEI--------TEFKIPTPNARPHAITAGAGI--DLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF- 274 (299)
T ss_dssp ECT-TCCE--------EEEECSSTTCCEEEEEECSTT--CEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-
T ss_pred ECC-CCcE--------EEEECCCCCCCceeEEECCCC--CEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-
Confidence 998 5441 111122344578899999998 56666667889999998 443 2233222 34677888
Q ss_pred CCCC
Q 019117 342 PQSV 345 (346)
Q Consensus 342 pdg~ 345 (346)
++|+
T Consensus 275 ~~g~ 278 (299)
T 2z2n_A 275 DGET 278 (299)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8775
No 185
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.69 E-value=2.6e-13 Score=118.56 Aligned_cols=273 Identities=11% Similarity=0.051 Sum_probs=172.1
Q ss_pred ceEEEEEEeecCCCccEEEEEcCCc-EEEEEec--cCceeeeEeeeecCCCccceEEEEEEEc----CCCCcEEEEe-ec
Q 019117 35 PLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCL--EGGVIAALQSYVDEDKEESFYTVSWACN----VDGIPFLVAG-GI 106 (346)
Q Consensus 35 ~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~l~~~-~~ 106 (346)
.+..+.|+| +|+++++++.++ |.+||+. +.+.+..+.. +... ..+.++ |+|+ +++++ ..
T Consensus 198 ~p~~v~~Sp----DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~------G~~P--~~ia~s~~~~pDGk-~l~v~n~~ 264 (567)
T 1qks_A 198 AVHISRLSA----SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI------GSEA--RSIETSKMEGWEDK-YAIAGAYW 264 (567)
T ss_dssp CEEEEEECT----TSCEEEEEETTSEEEEEETTSSSCCEEEEEEC------CSEE--EEEEECCSTTCTTT-EEEEEEEE
T ss_pred CccceEECC----CCCEEEEEcCCCeEEEEECCCCCCcEeEEEec------CCCC--ceeEEccccCCCCC-EEEEEEcc
Confidence 466899999 788888888776 9999985 6666655542 2222 344556 5998 55555 45
Q ss_pred CCeEEEEEccCcceeeeeccC----------CC-ceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCc
Q 019117 107 NGIIRVIDVSNEKLHKSFVGH----------GD-SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN 175 (346)
Q Consensus 107 dg~i~iwd~~~~~~~~~~~~~----------~~-~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 175 (346)
++.|.++|..+.+.+..+... .. .+..+..++.+..++++...+|.|.++|..+.+.+..... ....
T Consensus 265 ~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i--~~~~ 342 (567)
T 1qks_A 265 PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI--SAER 342 (567)
T ss_dssp TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE--ECCS
T ss_pred CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee--eccc
Confidence 699999999999888776521 12 5778888885566677777889999999987643322221 1345
Q ss_pred ceEEEEecCCCCcEEEE-EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CC-
Q 019117 176 EVLSVDFHPSDIYRIAS-CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD- 251 (346)
Q Consensus 176 ~v~~~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~- 251 (346)
....+.|+| +++++++ ...++.|.++|+.+.+....... --...|...-..+ ++ +.
T Consensus 343 ~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~~i~v------------------gg~~Phpg~g~~~-~~p~~g~ 402 (567)
T 1qks_A 343 FLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDT------------------GGQTPHPGRGANF-VHPTFGP 402 (567)
T ss_dssp SEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEEC------------------SSSSBCCTTCEEE-EETTTEE
T ss_pred cccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEEEEec------------------cCcCCCCccceee-ECCCCCc
Confidence 677899999 6666655 44678999999998432111000 0001233211122 22 23
Q ss_pred EEEEEe-ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcC-------CCcEEEEEcCCC
Q 019117 252 FILSKS-VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR-------EGKIFVWELQSS 323 (346)
Q Consensus 252 ~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~-------dg~i~iwd~~~~ 323 (346)
..+++. .+++|.++|..+.+.. ....+.++.+......-..+..+|++ ++|.+... .+.|.++|+.+.
T Consensus 403 v~~t~~~g~~~Vsvid~~~~~~~--~~~~kvv~~i~~~g~g~~~i~~~p~~--~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 403 VWATSHMGDDSVALIGTDPEGHP--DNAWKILDSFPALGGGSLFIKTHPNS--QYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEEEEBSSSSEEEEEECCTTTCT--TTBTSEEEEEECSCSCCCCEECCTTC--SEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EEEeCCCCCCeEEEecCCCCCCc--cccCEEEEEEecCCCCCEEEEeCCCC--CeEEEecCCCCCcccCceEEEEECCcc
Confidence 334443 4689999999874311 00122455555543343557889999 55665442 469999999887
Q ss_pred -----Ccc-eeeee---------eeeEEEEEecCCCCC
Q 019117 324 -----PPV-LIARL---------ICFSLHVKYNPQSVY 346 (346)
Q Consensus 324 -----~~~-~~~~~---------~~~~~~~~~spdg~~ 346 (346)
... ..... ...+.++.|+|||++
T Consensus 479 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 516 (567)
T 1qks_A 479 TGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTE 516 (567)
T ss_dssp CCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSE
T ss_pred cccccCCCcEEeccccccccCCCCcceEeeeECCCCCE
Confidence 211 22221 246889999999974
No 186
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.68 E-value=2.9e-13 Score=118.25 Aligned_cols=254 Identities=11% Similarity=0.028 Sum_probs=169.5
Q ss_pred CccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEcc--Ccceeeee
Q 019117 48 YFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS--NEKLHKSF 124 (346)
Q Consensus 48 ~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~ 124 (346)
.+.++++...++ |.++|..+++.+..+.. ...+..+. ++|||+ ++++++.++.|.+||+. +++.+..+
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~------g~~p~~v~--~SpDGr-~lyv~~~dg~V~viD~~~~t~~~v~~i 236 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDT------GYAVHISR--LSASGR-YLFVIGRDGKVNMIDLWMKEPTTVAEI 236 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEEC------SSCEEEEE--ECTTSC-EEEEEETTSEEEEEETTSSSCCEEEEE
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeC------CCCccceE--ECCCCC-EEEEEcCCCeEEEEECCCCCCcEeEEE
Confidence 345666666666 99999999888777752 33444455 459999 89999999999999996 77888777
Q ss_pred ccCCCceEEEEEe----CCCCceEEEe-eCCCCEEEEecCCCeeEEEecccCC-------C-CcceEEEEecCCCCcEEE
Q 019117 125 VGHGDSINEIRTQ----PLKPSLVVSA-SKDESVRLWNVQTGICILIFAGAGG-------H-RNEVLSVDFHPSDIYRIA 191 (346)
Q Consensus 125 ~~~~~~v~~~~~~----~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~-------~-~~~v~~~~~~~~~~~~l~ 191 (346)
.... ....++|+ | ++++++++ ..+++|.++|..+.+.+..+..... | ...+..+..++.+..+++
T Consensus 237 ~~G~-~P~~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv 314 (567)
T 1qks_A 237 KIGS-EARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 314 (567)
T ss_dssp ECCS-EEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEE
T ss_pred ecCC-CCceeEEccccCC-CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEE
Confidence 7543 46799999 6 66655554 5569999999999998887763210 1 226788888885566777
Q ss_pred EEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe-ecCeEEEEcCC
Q 019117 192 SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS-VDNEIVLWEPK 268 (346)
Q Consensus 192 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~-~d~~i~iwd~~ 268 (346)
....+|.|.++|...... ..+..+ ........+.|+ +++++++. .++.|.++|+.
T Consensus 315 ~~~~~g~v~~vd~~~~~~---------------------~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~ 372 (567)
T 1qks_A 315 NVKETGKILLVDYTDLNN---------------------LKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTK 372 (567)
T ss_dssp EETTTTEEEEEETTCSSE---------------------EEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred EecCCCeEEEEecCCCcc---------------------ceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECC
Confidence 777789999999876321 111111 223345567777 77776655 58999999999
Q ss_pred CCCCCCCCccccccccccC-----CCcCeeEEE-EeecCCcceEEEEc-CCCcEEEEEcCC-------CCcceeeeeee-
Q 019117 269 MKEQSPGEGTADILQKYPV-----PECDIWFIK-FSCDFHYNAAAIGN-REGKIFVWELQS-------SPPVLIARLIC- 333 (346)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~-~s~~~~~~~l~~~~-~dg~i~iwd~~~-------~~~~~~~~~~~- 333 (346)
+++. +..+.. |.+. .+. ++|++. .+.+++. .++.|.++|..+ .+.+......+
T Consensus 373 t~kl---------~~~i~vgg~~Phpg~--g~~~~~p~~g-~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~ 440 (567)
T 1qks_A 373 EGKL---------VAIEDTGGQTPHPGR--GANFVHPTFG-PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG 440 (567)
T ss_dssp TTEE---------EEEEECSSSSBCCTT--CEEEEETTTE-EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS
T ss_pred CCcE---------EEEEeccCcCCCCcc--ceeeECCCCC-cEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC
Confidence 8762 222221 2211 222 577753 4555553 568999999988 33334433332
Q ss_pred eEEEEEecCCCCC
Q 019117 334 FSLHVKYNPQSVY 346 (346)
Q Consensus 334 ~~~~~~~spdg~~ 346 (346)
....+..+|||++
T Consensus 441 g~~~i~~~p~~~~ 453 (567)
T 1qks_A 441 GSLFIKTHPNSQY 453 (567)
T ss_dssp CCCCEECCTTCSE
T ss_pred CCEEEEeCCCCCe
Confidence 2345788999874
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.68 E-value=3e-14 Score=115.26 Aligned_cols=219 Identities=10% Similarity=-0.075 Sum_probs=147.3
Q ss_pred ceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeE
Q 019117 85 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI 164 (346)
Q Consensus 85 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 164 (346)
....++|. |+|+.+++++..++.|..|+..++ ...+..+...+.+++++| ++.++++...++.|.+||..+++..
T Consensus 29 ~~eg~~~d--~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 29 WTEGPVYV--PARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEWE 103 (296)
T ss_dssp SEEEEEEE--GGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCEE
T ss_pred cccCCeEe--CCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcEE
Confidence 34456666 888647788888999999999877 566666778899999999 7888777777789999999888755
Q ss_pred EEecccCC-CCcceEEEEecCCCCcEEEE----Eec-------------CCeEEEEEccccceeeeeceeecCCCCCCCC
Q 019117 165 LIFAGAGG-HRNEVLSVDFHPSDIYRIAS----CGM-------------DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT 226 (346)
Q Consensus 165 ~~~~~~~~-~~~~v~~~~~~~~~~~~l~s----~~~-------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 226 (346)
........ ....+..++++| +++++++ ++. .+.|..++...
T Consensus 104 ~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g-------------------- 162 (296)
T 3e5z_A 104 SIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDG-------------------- 162 (296)
T ss_dssp EEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTS--------------------
T ss_pred EEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCCC--------------------
Confidence 44321111 123567899998 8888887 331 23455554431
Q ss_pred ccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCC-CCCCCCCCccccccccccCCCcCeeEEEEeecCCc
Q 019117 227 KYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPK-MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY 303 (346)
Q Consensus 227 ~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 303 (346)
....+..+......++|+ ++.+++.+.++.|.+|++. +++.. .....+..+...+..++++++|
T Consensus 163 -----~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~------~~~~~~~~~~~~p~~i~~d~~G-- 229 (296)
T 3e5z_A 163 -----TLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETE------YQGVHFTVEPGKTDGLRVDAGG-- 229 (296)
T ss_dssp -----CEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEE------EEEEEECCSSSCCCSEEEBTTS--
T ss_pred -----CEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCc------CCCeEeeCCCCCCCeEEECCCC--
Confidence 122233445556788887 7777777778999999987 32200 0011112244556789999999
Q ss_pred ceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEe-cCCCC
Q 019117 304 NAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKY-NPQSV 345 (346)
Q Consensus 304 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-spdg~ 345 (346)
.+.++. ++.|.+||.. ++.+..+.....+.+++| +||++
T Consensus 230 ~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~~~~~~f~~~d~~ 269 (296)
T 3e5z_A 230 LIWASA--GDGVHVLTPD-GDELGRVLTPQTTSNLCFGGPEGR 269 (296)
T ss_dssp CEEEEE--TTEEEEECTT-SCEEEEEECSSCCCEEEEESTTSC
T ss_pred CEEEEc--CCeEEEECCC-CCEEEEEECCCCceeEEEECCCCC
Confidence 555554 7889999986 555555554444788999 58875
No 188
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.68 E-value=4.9e-14 Score=115.63 Aligned_cols=242 Identities=10% Similarity=-0.064 Sum_probs=156.5
Q ss_pred cEEEEEeccCceeeeEeee-ecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEe
Q 019117 59 RVTVYQCLEGGVIAALQSY-VDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQ 137 (346)
Q Consensus 59 ~v~i~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 137 (346)
+|.++|..+++....+..- ...........+.+ .+++ ++++...++.|.+||..+++.+.++. .......++++
T Consensus 18 ~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~---~~~~-lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~ 92 (328)
T 3dsm_A 18 TLSYYDPATCEVENEVFYRANGFKLGDVAQSMVI---RDGI-GWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL 92 (328)
T ss_dssp EEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEE---ETTE-EEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred eEEEEECCCCEEhhhhHhhhcCcccCccceEEEE---ECCE-EEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence 4999998887765433110 01112233444554 2344 66666678999999999999988885 34678899998
Q ss_pred CCCCceEEEeeCCCCEEEEecCCCeeEEEecccC--CCCcceEEEEecCCCCcEEEEEe-cCCeEEEEEccccceeeeec
Q 019117 138 PLKPSLVVSASKDESVRLWNVQTGICILIFAGAG--GHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKS 214 (346)
Q Consensus 138 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~ 214 (346)
+ ++.++++...++.|.+||..+++....+.... +.......+++ . ++.++++.. .++.|.++|+.+.+.
T Consensus 93 ~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~----- 164 (328)
T 3dsm_A 93 S-DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKV----- 164 (328)
T ss_dssp E-TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEE-----
T ss_pred C-CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeE-----
Confidence 8 66555555478999999999998887776211 01125667777 3 666666654 488999999987432
Q ss_pred eeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeec----------CeEEEEcCCCCCCCCCCcccccc
Q 019117 215 FTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD----------NEIVLWEPKMKEQSPGEGTADIL 282 (346)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d----------~~i~iwd~~~~~~~~~~~~~~~~ 282 (346)
...+.. ......+.++ |++++++..+ +.|.++|..+.+ ..
T Consensus 165 ------------------~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~---------v~ 216 (328)
T 3dsm_A 165 ------------------VDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT---------VE 216 (328)
T ss_dssp ------------------EEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE---------EE
T ss_pred ------------------EEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe---------EE
Confidence 112221 1123345555 5555555544 789999998775 33
Q ss_pred ccccCC-CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeee---eeeEEEEEecCCCC
Q 019117 283 QKYPVP-ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL---ICFSLHVKYNPQSV 345 (346)
Q Consensus 283 ~~~~~~-~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~spdg~ 345 (346)
..+... ......++|+|++ ++|.++.. .|.+||..+++....... ...+..++++|++.
T Consensus 217 ~~~~~~~g~~p~~la~~~d~--~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g 279 (328)
T 3dsm_A 217 KQFKFKLGDWPSEVQLNGTR--DTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNG 279 (328)
T ss_dssp EEEECCTTCCCEEEEECTTS--CEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTC
T ss_pred EEEecCCCCCceeEEEecCC--CEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCC
Confidence 333322 2367899999998 45665544 899999998875322111 24578899999543
No 189
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.67 E-value=1.1e-14 Score=120.60 Aligned_cols=224 Identities=13% Similarity=0.042 Sum_probs=140.8
Q ss_pred CceEEEEEEeecCCCccEEEEEcCC----c--EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117 34 RPLYAVVFNFIDSRYFNVFATVGGN----R--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~~~~----~--v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 107 (346)
..+..++|+| +|+.||..+.+ . |.+|++.+++...... ... +..++|+ |+|+ .|+.++.+
T Consensus 59 ~~~~~~~~Sp----Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~------~~~-~~~~~ws--pdg~-~l~~~~~~ 124 (347)
T 2gop_A 59 ENATMPRISP----DGKKIAFMRANEEKKVSEIWVADLETLSSKKILE------AKN-IRSLEWN--EDSR-KLLIVGFK 124 (347)
T ss_dssp ESCEEEEECT----TSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE------ESE-EEEEEEC--TTSS-EEEEEEEC
T ss_pred ccCCCeEECC----CCCEEEEEEeccCCCcceEEEEECCCCceEEEEc------CCC-ccceeEC--CCCC-EEEEEEcc
Confidence 4578899999 78888877642 2 7788877665444332 122 6556665 9998 77776532
Q ss_pred ---------------------------CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCC-------CE
Q 019117 108 ---------------------------GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE-------SV 153 (346)
Q Consensus 108 ---------------------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-------~i 153 (346)
..|.+||+.+++.+..+.. . .+..+.|+| ++ +++++..+. ..
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~ 200 (347)
T 2gop_A 125 RREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFW 200 (347)
T ss_dssp CCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCE
T ss_pred CCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC-Ce-EEEEEecccccccccccc
Confidence 5799999988876455544 3 788999999 66 777776542 34
Q ss_pred EEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecC--------CeEEEEEccccceeeeeceeecCCCCCCC
Q 019117 154 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD--------NTVKIWSMKEFWTYVEKSFTWTDLPSKFP 225 (346)
Q Consensus 154 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 225 (346)
.+|.+.+++. ..+. .+ ..+..+ +| +++.|+.++.+ ..|.+|| ..+
T Consensus 201 ~l~~~d~~~~-~~l~---~~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~----------------- 253 (347)
T 2gop_A 201 DIYIWEDGKE-EKMF---EK-VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD--GKE----------------- 253 (347)
T ss_dssp EEEEEETTEE-EEEE---EE-ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC--SSC-----------------
T ss_pred cEEEeCCCce-EEec---cC-cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC--CCc-----------------
Confidence 5555445544 3343 23 445544 88 77767666543 3677777 311
Q ss_pred CccceeceEEEeecccceEE-EEecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcc
Q 019117 226 TKYVQFPVFIASVHSNYVDC-NRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN 304 (346)
Q Consensus 226 ~~~~~~~~~~~~~~~~~i~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 304 (346)
.......+...+.. +.|+..++++++.++.++|| +.+++ . ..+..+...|.+++|+| .
T Consensus 254 ------~~~l~~~~~~~~~~~~~~sdg~~~~~~~~~~~~l~-~~~g~---------~-~~~~~~~~~v~~~~~s~-~--- 312 (347)
T 2gop_A 254 ------VMGILDEVDRGVGQAKIKDGKVYFTLFEEGSVNLY-IWDGE---------I-KPIAKGRHWIMGFDVDE-I--- 312 (347)
T ss_dssp ------EEESSTTCCSEEEEEEEETTEEEEEEEETTEEEEE-EESSS---------E-EEEECSSSEEEEEEESS-S---
T ss_pred ------eEeccccCCcccCCccEEcCcEEEEEecCCcEEEE-EcCCc---------e-EEEecCCCeEEeeeeeC-c---
Confidence 11111233455664 77762288888999999999 87432 2 22223466788999998 4
Q ss_pred eEEEEcCCCcE-EEEEcCCCC
Q 019117 305 AAAIGNREGKI-FVWELQSSP 324 (346)
Q Consensus 305 ~l~~~~~dg~i-~iwd~~~~~ 324 (346)
++++++.++.. .+|.+. ++
T Consensus 313 ~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 313 VVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp EEEEEECSSSCCEEEEES-SS
T ss_pred EEEEEcCCCChHHheEeC-Cc
Confidence 55566555554 777766 44
No 190
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.67 E-value=7.3e-16 Score=130.05 Aligned_cols=211 Identities=8% Similarity=-0.085 Sum_probs=133.7
Q ss_pred EEcCCCCcEEEEeecC---CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEec
Q 019117 92 ACNVDGIPFLVAGGIN---GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA 168 (346)
Q Consensus 92 ~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 168 (346)
.++|+|+ +|+..... ..|.+||+.+++.......+......+.|+| +++.|+.++.++.|.+||+.+++......
T Consensus 42 ~~SpdG~-~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~~~~~~~~~ 119 (396)
T 3c5m_A 42 CFTQDGK-KLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIST-DERAFFYVKNELNLMKVDLETLEEQVIYT 119 (396)
T ss_dssp CBCTTSC-EEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred cCCCCCC-EEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECC-CCCEEEEEEcCCcEEEEECCCCCcEEEEe
Confidence 3459999 76665432 4788889988876554443333333478999 88999998888899999999887655554
Q ss_pred ccCCCCcceEE-------------------EEecCCCCcEEEEE-----ecCCeEEEEEccccceeeeeceeecCCCCCC
Q 019117 169 GAGGHRNEVLS-------------------VDFHPSDIYRIASC-----GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF 224 (346)
Q Consensus 169 ~~~~~~~~v~~-------------------~~~~~~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 224 (346)
.+...... +.|+| +++.++.. ..+..|.+||+...+
T Consensus 120 ---~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~---------------- 179 (396)
T 3c5m_A 120 ---VDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNPTCRLIKVDIETGE---------------- 179 (396)
T ss_dssp ---CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEEEEEETTTCC----------------
T ss_pred ---cccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCCcceEEEEECCCCc----------------
Confidence 23332222 24566 44444433 345678888887622
Q ss_pred CCccceeceEEEeecccceEEEEecC---CEEEEEeec------CeEEEEcCCCCCCCCCCccccccccccCC--CcCee
Q 019117 225 PTKYVQFPVFIASVHSNYVDCNRWLG---DFILSKSVD------NEIVLWEPKMKEQSPGEGTADILQKYPVP--ECDIW 293 (346)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~v~ 293 (346)
...+..+...+..+.|++ +.|+..+.+ ..|.+||+...+. ..+..+ ...+.
T Consensus 180 --------~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~----------~~l~~~~~~~~~~ 241 (396)
T 3c5m_A 180 --------LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV----------RKIKEHAEGESCT 241 (396)
T ss_dssp --------EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC----------EESSCCCTTEEEE
T ss_pred --------EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce----------eEeeccCCCcccc
Confidence 122234566677888863 455555443 4688888865531 111111 23577
Q ss_pred EEEEeecCCcceEEEEcCC-----CcEEEEEcCCCCcceeeeeeeeEEEEEecC-CCCC
Q 019117 294 FIKFSCDFHYNAAAIGNRE-----GKIFVWELQSSPPVLIARLICFSLHVKYNP-QSVY 346 (346)
Q Consensus 294 ~~~~s~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~sp-dg~~ 346 (346)
.++|+||+ ++|+..+.+ +.|++||+.+++........+. . +.|+| ||++
T Consensus 242 ~~~~spdg--~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-~-~~~s~~dg~~ 296 (396)
T 3c5m_A 242 HEFWIPDG--SAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPC-S-HLMSNFDGSL 296 (396)
T ss_dssp EEEECTTS--SCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSE-E-EEEECSSSSE
T ss_pred ceEECCCC--CEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCC-C-CCccCCCCce
Confidence 89999999 556665443 4599999998876554444432 2 89999 9863
No 191
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.67 E-value=1.2e-13 Score=110.19 Aligned_cols=213 Identities=8% Similarity=-0.034 Sum_probs=149.6
Q ss_pred CccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeecc
Q 019117 48 YFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG 126 (346)
Q Consensus 48 ~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 126 (346)
.+++|++++.++ |.+||..+++.+..+.... ...+..+.+. |+|+ +++ +.++.|..||. +++.+..+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~----~~~~~~~~~~--pdG~-ilv--s~~~~V~~~d~-~G~~~W~~~~ 73 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEK----GWECNSVAAT--KAGE-ILF--SYSKGAKMITR-DGRELWNIAA 73 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCT----TCCCCEEEEC--TTSC-EEE--ECBSEEEEECT-TSCEEEEEEC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCc----cCCCcCeEEC--CCCC-EEE--eCCCCEEEECC-CCCEEEEEcC
Confidence 368899988888 9999988999887776421 1234445554 9998 777 34678999998 8999988886
Q ss_pred C-CCceEEEEEeCCCCceEEEeeC-CCCEEEEecCCCeeEEEecccC---CCCcceEEEEecCCCCcEEEEEecCCeEEE
Q 019117 127 H-GDSINEIRTQPLKPSLVVSASK-DESVRLWNVQTGICILIFAGAG---GHRNEVLSVDFHPSDIYRIASCGMDNTVKI 201 (346)
Q Consensus 127 ~-~~~v~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i 201 (346)
+ ...+.++.+.+ +++.+++.+. ++.|..+|. +++.+..+.... .+......+++.+ +++++++...++.|..
T Consensus 74 ~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~ 150 (276)
T 3no2_A 74 PAGCEMQTARILP-DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVRE 150 (276)
T ss_dssp CTTCEEEEEEECT-TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEE
T ss_pred CCCccccccEECC-CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEE
Confidence 5 35788999999 8888888876 778888885 688777765311 1223455667887 8899999999999999
Q ss_pred EEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccc
Q 019117 202 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTA 279 (346)
Q Consensus 202 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 279 (346)
||.. ++. +..+... ....++... ++.++++..+++|..+|..+++
T Consensus 151 ~d~~-G~~-----------------------~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~-------- 197 (276)
T 3no2_A 151 IAPN-GQL-----------------------LNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNR-------- 197 (276)
T ss_dssp ECTT-SCE-----------------------EEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCC--------
T ss_pred ECCC-CCE-----------------------EEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCc--------
Confidence 9987 332 2222222 122233333 7888888888899999999887
Q ss_pred cccccccCC------CcCeeEEEEeecCCcceEEEE
Q 019117 280 DILQKYPVP------ECDIWFIKFSCDFHYNAAAIG 309 (346)
Q Consensus 280 ~~~~~~~~~------~~~v~~~~~s~~~~~~~l~~~ 309 (346)
.+.++... -..+..+...+++ .++++.
T Consensus 198 -~~w~~~~~~~~~~~l~~~~~~~~~~~G--~i~v~~ 230 (276)
T 3no2_A 198 -IVRRVNANDIEGVQLFFVAQLFPLQNG--GLYICN 230 (276)
T ss_dssp -EEEEEEGGGSBSCCCSEEEEEEECTTS--CEEEEE
T ss_pred -EEEEecCCCCCCccccccccceEcCCC--CEEEEe
Confidence 33333211 1236777788888 556555
No 192
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.67 E-value=4.1e-14 Score=112.80 Aligned_cols=211 Identities=12% Similarity=0.051 Sum_probs=148.0
Q ss_pred CCCcEEEEeecCCeEEEEEccCcceeeeeccCC-CceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC
Q 019117 96 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG-DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR 174 (346)
Q Consensus 96 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 174 (346)
.++ +|++++.++.|.+||.++++.+..+..+. ..+.++.+.| ++++++ +.++.|..||. +++.+..+.. ...
T Consensus 4 ~~~-~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~--~~~ 76 (276)
T 3no2_A 4 PQH-LLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAA--PAG 76 (276)
T ss_dssp CCE-EEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEEC--CTT
T ss_pred CCc-EEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcC--CCC
Confidence 345 89999999999999999999999998765 4789999999 888888 34678999999 8999999873 123
Q ss_pred cceEEEEecCCCCcEEEEEec-CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEe--cCC
Q 019117 175 NEVLSVDFHPSDIYRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW--LGD 251 (346)
Q Consensus 175 ~~v~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~ 251 (346)
..+.++.+.| +++++++.+. ++.|..+|... +....... ... ...+......+.+ +|+
T Consensus 77 ~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~~G-k~l~~~~~--~~~---------------~~~~~~~~~~v~~~~~G~ 137 (276)
T 3no2_A 77 CEMQTARILP-DGNALVAWCGHPSTILEVNMKG-EVLSKTEF--ETG---------------IERPHAQFRQINKNKKGN 137 (276)
T ss_dssp CEEEEEEECT-TSCEEEEEESTTEEEEEECTTS-CEEEEEEE--CCS---------------CSSGGGSCSCCEECTTSC
T ss_pred ccccccEECC-CCCEEEEecCCCCEEEEEeCCC-CEEEEEec--cCC---------------CCcccccccCceECCCCC
Confidence 5788999998 8888888776 77777777532 21111100 000 0001111112222 288
Q ss_pred EEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeee
Q 019117 252 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL 331 (346)
Q Consensus 252 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 331 (346)
++++...++.|..||.. ++ .+.++..+ ..+.++.+.+++ .++++++.++.|..+|..+++.+-.+..
T Consensus 138 ~lv~~~~~~~v~~~d~~-G~---------~~w~~~~~-~~~~~~~~~~~g--~~~v~~~~~~~v~~~d~~tG~~~w~~~~ 204 (276)
T 3no2_A 138 YLVPLFATSEVREIAPN-GQ---------LLNSVKLS-GTPFSSAFLDNG--DCLVACGDAHCFVQLNLESNRIVRRVNA 204 (276)
T ss_dssp EEEEETTTTEEEEECTT-SC---------EEEEEECS-SCCCEEEECTTS--CEEEECBTTSEEEEECTTTCCEEEEEEG
T ss_pred EEEEecCCCEEEEECCC-CC---------EEEEEECC-CCccceeEcCCC--CEEEEeCCCCeEEEEeCcCCcEEEEecC
Confidence 99999999999999998 66 45555443 345667788888 6888888888999999998887655532
Q ss_pred e-------eeEEEEEecCCCC
Q 019117 332 I-------CFSLHVKYNPQSV 345 (346)
Q Consensus 332 ~-------~~~~~~~~spdg~ 345 (346)
. ..+..+...|+|.
T Consensus 205 ~~~~~~~l~~~~~~~~~~~G~ 225 (276)
T 3no2_A 205 NDIEGVQLFFVAQLFPLQNGG 225 (276)
T ss_dssp GGSBSCCCSEEEEEEECTTSC
T ss_pred CCCCCccccccccceEcCCCC
Confidence 1 1144555555553
No 193
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.67 E-value=3.8e-14 Score=116.48 Aligned_cols=286 Identities=12% Similarity=0.005 Sum_probs=176.0
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEc-----------CCcEEEEEeccCceeeeEeeeecC--CCccceEEE
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVG-----------GNRVTVYQCLEGGVIAALQSYVDE--DKEESFYTV 89 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~-----------~~~v~i~~~~~~~~~~~~~~~~~~--~~~~~v~~~ 89 (346)
.+.+.++.....+ .++++| +|+.+++++ .+.|.+||..+.+.+..+..-... ........+
T Consensus 69 ~~v~~~I~vG~~P--~va~sp----DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~ 142 (386)
T 3sjl_D 69 GRVIGMIDGGFLP--NPVVAD----DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMT 142 (386)
T ss_dssp TEEEEEEEECSSC--EEEECT----TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGE
T ss_pred CeEEEEEECCCCC--cEEECC----CCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceE
Confidence 4455555444444 399999 777776664 234999999998888777531100 001112224
Q ss_pred EEEEcCCCCcEEEEeec--CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC-CeeEEE
Q 019117 90 SWACNVDGIPFLVAGGI--NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT-GICILI 166 (346)
Q Consensus 90 ~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~ 166 (346)
. ++|||+ +++++.. ++.|.++|+.+++.+.++.... . .. +.|.+...+++.+.||.+.+.++.+ ++....
T Consensus 143 a--~spDGk-~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~-~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~ 215 (386)
T 3sjl_D 143 S--LTPDGK-TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YH-IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT 215 (386)
T ss_dssp E--ECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EE-EEEEETTEEEEEETTSCEEEEECCSSSCCEEE
T ss_pred E--EcCCCC-EEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ce-eecCCCceeEEECCCCCEEEEECCCCCeEEEe
Confidence 4 459999 7777653 6899999999999998886322 1 22 2343667788888899999999976 554322
Q ss_pred ecc-cCCCCcceE-EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE
Q 019117 167 FAG-AGGHRNEVL-SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD 244 (346)
Q Consensus 167 ~~~-~~~~~~~v~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (346)
... ......++. ...|.+.++++++ .+.+|.|.+.|+................ .. ...........
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~---------~~--~~~g~~p~g~q 283 (386)
T 3sjl_D 216 HTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTE---------AE--RADGWRPGGWQ 283 (386)
T ss_dssp ECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCH---------HH--HHTTEEECSSS
T ss_pred ecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccc---------cc--ccccccCCCcc
Confidence 210 001112222 2456432666555 4457999999997632211111100000 00 00001112222
Q ss_pred EEEec--CCEEEEEee----------cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC
Q 019117 245 CNRWL--GDFILSKSV----------DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE 312 (346)
Q Consensus 245 ~~~~~--~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d 312 (346)
.+.++ ++.+..... .+.|.+.|+.+.+ .+.++... ..++++++++|++..++++...+
T Consensus 284 ~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k---------v~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~ 353 (386)
T 3sjl_D 284 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE---------RLAKFEMG-HEIDSINVSQDEKPLLYALSTGD 353 (386)
T ss_dssp CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC---------EEEEEEEE-EEECEEEECSSSSCEEEEEETTT
T ss_pred eeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe---------EEEEEECC-CCcceEEECCCCCeEEEEEcCCC
Confidence 23333 566655532 3579999999987 55555543 36889999999952244546678
Q ss_pred CcEEEEEcCCCCcceeeeeeeeEEEEEecCC
Q 019117 313 GKIFVWELQSSPPVLIARLICFSLHVKYNPQ 343 (346)
Q Consensus 313 g~i~iwd~~~~~~~~~~~~~~~~~~~~~spd 343 (346)
+.|.++|..+++.+......++.+.+.+++|
T Consensus 354 ~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 354 KTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp TEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred CeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 9999999999999999999999999999998
No 194
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.67 E-value=2.5e-13 Score=123.29 Aligned_cols=226 Identities=8% Similarity=-0.069 Sum_probs=141.6
Q ss_pred EEEEcCCCCcEEEEeecCC-----eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCC------------
Q 019117 90 SWACNVDGIPFLVAGGING-----IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDES------------ 152 (346)
Q Consensus 90 ~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~------------ 152 (346)
.+.++|||+ +|+.+..++ .|++||+.+++.+.....+ ..+..++|+| +++.|+.++.++.
T Consensus 129 ~~~~SPDg~-~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~ 205 (710)
T 2xdw_A 129 GYAFSEDGE-YFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTETSTN 205 (710)
T ss_dssp EEEECTTSS-EEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECT-TSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred EEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEe-CCCEEEEEEECCccccccccccccC
Confidence 344559999 777665433 8999999999876543322 2367899999 8888888877766
Q ss_pred ----EEEEecCCCeeE--EEecccCCCCcceEEEEecCCCCcEEEEEec-----CCeEEEEEccccceeeeeceeecCCC
Q 019117 153 ----VRLWNVQTGICI--LIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-----DNTVKIWSMKEFWTYVEKSFTWTDLP 221 (346)
Q Consensus 153 ----i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~ 221 (346)
|++|++.+++.. ..+. ...+...+..+.|+| ++++|+..+. +..|.+||+........
T Consensus 206 ~~~~v~~~~l~t~~~~~~~v~~-~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~--------- 274 (710)
T 2xdw_A 206 LHQKLYYHVLGTDQSEDILCAE-FPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGIT--------- 274 (710)
T ss_dssp CCCEEEEEETTSCGGGCEEEEC-CTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC---------
T ss_pred CCCEEEEEECCCCcccceEEec-cCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccC---------
Confidence 999999877532 2222 113556688999999 7777776654 56899999875100000
Q ss_pred CCCCCccceeceEEEeecccceEEE-EecCCEEEEEeec----CeEEEEcCCCCCCCCCCccccccccccCCC--cCeeE
Q 019117 222 SKFPTKYVQFPVFIASVHSNYVDCN-RWLGDFILSKSVD----NEIVLWEPKMKEQSPGEGTADILQKYPVPE--CDIWF 294 (346)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~v~~ 294 (346)
.......+..+...+... .-.|+.|+..+.+ +.|.+||+.++.. .....+..+. ..+..
T Consensus 275 -------~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~-------~~~~~l~~~~~~~~~~~ 340 (710)
T 2xdw_A 275 -------GILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE-------SKWKVLVPEHEKDVLEW 340 (710)
T ss_dssp -------SSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG-------GGCEEEECCCSSCEEEE
T ss_pred -------CccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc-------ccceeccCCCCCCeEEE
Confidence 000122334444444432 2227766665543 3699999887531 0112222332 25778
Q ss_pred EEEeecCCcceEEEEcCCCc--EEEEEcCCCCcceeeee-eeeEEEEEecCCCC
Q 019117 295 IKFSCDFHYNAAAIGNREGK--IFVWELQSSPPVLIARL-ICFSLHVKYNPQSV 345 (346)
Q Consensus 295 ~~~s~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~-~~~~~~~~~spdg~ 345 (346)
++|++++ .++++...|+. |++|++.+++.+..... .+.+..+.++|+++
T Consensus 341 ~~~~~~~--~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~ 392 (710)
T 2xdw_A 341 VACVRSN--FLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDT 392 (710)
T ss_dssp EEEETTT--EEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCS
T ss_pred EEEEcCC--EEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCC
Confidence 8998666 67888888874 66678767764443333 34567788999874
No 195
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.66 E-value=5.5e-14 Score=127.24 Aligned_cols=219 Identities=11% Similarity=0.014 Sum_probs=136.5
Q ss_pred ceEEEEEEEcCCCCcEEE-----EeecCCeEEEEEccCccee-eeeccCCCceEEEEEeCCCCceEEEeeCCCC------
Q 019117 85 SFYTVSWACNVDGIPFLV-----AGGINGIIRVIDVSNEKLH-KSFVGHGDSINEIRTQPLKPSLVVSASKDES------ 152 (346)
Q Consensus 85 ~v~~~~~~~~~~~~~~l~-----~~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~------ 152 (346)
.+...+ ++|||+ +|+ .|+.+..|++||+.+++.+ .... .......++|+| +++.|+.++.|..
T Consensus 122 ~~~~~~--~SPDG~-~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 122 SLGTWA--VSWDGK-KVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EGGKYATPKWTP-DSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp EEEEEE--ECTTSS-EEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SCCTTCCCEECT-TSSEEEEEECCCCTTSCGG
T ss_pred EEEEEE--ECCCCC-EEEEEECCCCCceEEEEEEECCCCCCcCCccc-CcccccceEEec-CCCEEEEEEecCCCCCccc
Confidence 444444 459999 777 4455678999999998865 2111 111126899999 8888888888776
Q ss_pred -------EEEEecCCCee--EEEecccCCCCcceEEEEecCCCCcEEEEEecCC----eEEEEEccccceeeeeceeecC
Q 019117 153 -------VRLWNVQTGIC--ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN----TVKIWSMKEFWTYVEKSFTWTD 219 (346)
Q Consensus 153 -------i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~~ 219 (346)
|++|++.+++. ...+. ...+...+..+.|+| ++++|+..+.++ .|.+|+....
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~-~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~------------ 262 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHE-RTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEK------------ 262 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEEC-CCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCS------------
T ss_pred cCCCCCEEEEEECCCCchhceEEEe-cCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCC------------
Confidence 99999987762 22222 114556888999999 777776666554 5555544321
Q ss_pred CCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEee----cCeEEEEcCCCCCCCCCCcccccccccc-CC-CcCe
Q 019117 220 LPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSV----DNEIVLWEPKMKEQSPGEGTADILQKYP-VP-ECDI 292 (346)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~-~~~v 292 (346)
....+..+...+....+. ++ ++..+. ++.|.+||+.+++.. ....+. .+ ...+
T Consensus 263 ------------~~~~l~~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~-------~~~~l~~~~~~~~l 322 (695)
T 2bkl_A 263 ------------DFRLLVKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARA-------SWKEIVPEDSSASL 322 (695)
T ss_dssp ------------SCEEEEECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGG-------GCEEEECCCSSCEE
T ss_pred ------------ceEEeecCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCcc-------CCeEEecCCCCCeE
Confidence 123344445455555455 55 444443 588999999775410 011222 22 3457
Q ss_pred eEEEEeecCCcceEEEEcCCCcEEEEEcC-CCCcceeeee--eeeEEEEEecCCCC
Q 019117 293 WFIKFSCDFHYNAAAIGNREGKIFVWELQ-SSPPVLIARL--ICFSLHVKYNPQSV 345 (346)
Q Consensus 293 ~~~~~s~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~--~~~~~~~~~spdg~ 345 (346)
..++|+ ++ .++++...|+..++|.+. +++....... .+.+..+.++||++
T Consensus 323 ~~~~~~-~~--~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~ 375 (695)
T 2bkl_A 323 LSVSIV-GG--HLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLD 375 (695)
T ss_dssp EEEEEE-TT--EEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCS
T ss_pred EEEEEE-CC--EEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCC
Confidence 778887 44 688888999988888665 3443333332 23456678888874
No 196
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.64 E-value=1.2e-13 Score=110.18 Aligned_cols=216 Identities=10% Similarity=-0.014 Sum_probs=140.0
Q ss_pred eEEEEEEEcCCCCcEEE-EeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeE
Q 019117 86 FYTVSWACNVDGIPFLV-AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI 164 (346)
Q Consensus 86 v~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 164 (346)
...+++ +++|+ +++ +...++.|.+|+..+.........+...+.++++.+ ++.++++.. ++.|.+||......
T Consensus 26 p~~i~~--~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~- 99 (270)
T 1rwi_B 26 PSGVAV--DSAGN-VYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQ- 99 (270)
T ss_dssp EEEEEE--CTTCC-EEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCC-
T ss_pred ccceEE--CCCCC-EEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceE-
Confidence 344544 48888 777 557789999999766543322223345678999999 677666655 88999999875543
Q ss_pred EEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE
Q 019117 165 LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD 244 (346)
Q Consensus 165 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (346)
..+.. .....+.+++++| ++.++++...++.|.+|+...... ..........+.
T Consensus 100 ~~~~~--~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~-----------------------~~~~~~~~~~p~ 153 (270)
T 1rwi_B 100 TVLPF--DGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQ-----------------------TVLPFTGLNDPD 153 (270)
T ss_dssp EECCC--CSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSC-----------------------EECCCCSCCSCC
T ss_pred eeeec--CCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCcee-----------------------EeeccccCCCce
Confidence 33321 2335789999998 778788777788999997654211 000111122355
Q ss_pred EEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117 245 CNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (346)
Q Consensus 245 ~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~ 322 (346)
.++++ ++++++...++.|.+||...... ......+...+..+++++++ .++++...++.|.+|+..+
T Consensus 154 ~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~---------~~~~~~~~~~p~~i~~d~~g--~l~v~~~~~~~v~~~~~~~ 222 (270)
T 1rwi_B 154 GVAVDNSGNVYVTDTDNNRVVKLEAESNNQ---------VVLPFTDITAPWGIAVDEAG--TVYVTEHNTNQVVKLLAGS 222 (270)
T ss_dssp CEEECTTCCEEEEEGGGTEEEEECTTTCCE---------EECCCSSCCSEEEEEECTTC--CEEEEETTTSCEEEECTTC
T ss_pred eEEEeCCCCEEEEECCCCEEEEEecCCCce---------EeecccCCCCceEEEECCCC--CEEEEECCCCcEEEEcCCC
Confidence 66666 67666666788999999876541 11111222567899999998 6777777789999999876
Q ss_pred CCcceeeeee--eeEEEEEecCCCC
Q 019117 323 SPPVLIARLI--CFSLHVKYNPQSV 345 (346)
Q Consensus 323 ~~~~~~~~~~--~~~~~~~~spdg~ 345 (346)
..... .... ..+..++++|+|+
T Consensus 223 ~~~~~-~~~~~~~~p~~i~~~~~g~ 246 (270)
T 1rwi_B 223 TTSTV-LPFTGLNTPLAVAVDSDRT 246 (270)
T ss_dssp SCCEE-CCCCSCSCEEEEEECTTCC
T ss_pred Cccee-eccCCCCCceeEEECCCCC
Confidence 54322 2222 3478899999986
No 197
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.63 E-value=7.8e-14 Score=127.14 Aligned_cols=244 Identities=9% Similarity=-0.047 Sum_probs=150.8
Q ss_pred cCCCceEEEEEEeecCCCccEEEEEcCC------cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEe
Q 019117 31 EGKRPLYAVVFNFIDSRYFNVFATVGGN------RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (346)
Q Consensus 31 ~h~~~v~~~~~~p~~~~~~~~la~~~~~------~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 104 (346)
+|...+..++||| ||++||.+..+ .|++||+.+++.+.... ....+..++|+ || + .|+.+
T Consensus 160 ~~~~~~~~~~~SP----DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~------~~~~~~~~~ws--pD-~-~l~~~ 225 (741)
T 1yr2_A 160 DGATALDAWAASD----DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL------KWVKFSGLAWL--GN-D-ALLYS 225 (741)
T ss_dssp ---EEEEEEEECT----TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE------EEEESCCCEES--TT-S-EEEEE
T ss_pred CCCEEEEeEEECC----CCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC------CCceeccEEEE--CC-C-EEEEE
Confidence 3445688999999 78888887543 29999998887654311 11112235555 88 7 77776
Q ss_pred ecCCe--------------EEEEEccCcce--eeee--ccCCCceEEEEEeCCCCceEEEeeCCC-----CEEEEecCCC
Q 019117 105 GINGI--------------IRVIDVSNEKL--HKSF--VGHGDSINEIRTQPLKPSLVVSASKDE-----SVRLWNVQTG 161 (346)
Q Consensus 105 ~~dg~--------------i~iwd~~~~~~--~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~ 161 (346)
+.++. |.+|++.++.. ...+ ..+...+..+.|+| ++++|+..+.++ .|.+||+.++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 226 RFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp ECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred EecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCC
Confidence 65543 88999877652 2222 33344688999999 787777666443 7999999876
Q ss_pred --eeEEEecccCCCCcceEEEEecCCCCcEEEEEec----CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEE
Q 019117 162 --ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM----DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 235 (346)
Q Consensus 162 --~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (346)
+....+. .+...+....+ | ++..|+..+. ++.|.+||+.... ......
T Consensus 305 ~~~~~~~l~---~~~~~~~~~~~-~-dg~~l~~~s~~~~~~~~l~~~d~~~~~---------------------~~~~~l 358 (741)
T 1yr2_A 305 KIGPVTALI---PDLKAQWDFVD-G-VGDQLWFVSGDGAPLKKIVRVDLSGST---------------------PRFDTV 358 (741)
T ss_dssp EECCCEEEE---CSSSSCEEEEE-E-ETTEEEEEECTTCTTCEEEEEECSSSS---------------------CEEEEE
T ss_pred CCcccEEec---CCCCceEEEEe-c-cCCEEEEEECCCCCCCEEEEEeCCCCc---------------------cccEEE
Confidence 3134444 34444444433 6 5555655554 3459999987621 001112
Q ss_pred EeecccceEEEEec-CCEEEEEeecCeEEEEcCCC-CCCCCCCccccccccccCC-CcCeeEEEEeecCCcceEEE---E
Q 019117 236 ASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKM-KEQSPGEGTADILQKYPVP-ECDIWFIKFSCDFHYNAAAI---G 309 (346)
Q Consensus 236 ~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~~l~~---~ 309 (346)
+..+...+..+.+. +.++++...|+..+||.++. ++ ....+..+ .+.+..+.++|+++ .++++ .
T Consensus 359 ~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~---------~~~~l~~~~~~~v~~~~~s~d~~-~l~~~~ss~ 428 (741)
T 1yr2_A 359 VPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGK---------PAGAVSLPGIGSASGLSGRPGDR-HAYLSFSSF 428 (741)
T ss_dssp ECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSC---------EEEECBCSSSCEEEEEECCBTCS-CEEEEEEET
T ss_pred ecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCC---------ceeeccCCCCeEEEEeecCCCCC-EEEEEEcCC
Confidence 23344456667777 55777888898888876542 22 23334432 46788899999884 23332 2
Q ss_pred cCCCcEEEEEcCCCCc
Q 019117 310 NREGKIFVWELQSSPP 325 (346)
Q Consensus 310 ~~dg~i~iwd~~~~~~ 325 (346)
...+.|++||+.+++.
T Consensus 429 ~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 429 TQPATVLALDPATAKT 444 (741)
T ss_dssp TEEEEEEEEETTTTEE
T ss_pred CCCCEEEEEECCCCcE
Confidence 3467899999988763
No 198
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.63 E-value=2e-12 Score=105.40 Aligned_cols=247 Identities=10% Similarity=0.009 Sum_probs=153.6
Q ss_pred cCCCceEEEEEEeecCCCccEEEE-------Ec-CCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCC-CCcEE
Q 019117 31 EGKRPLYAVVFNFIDSRYFNVFAT-------VG-GNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFL 101 (346)
Q Consensus 31 ~h~~~v~~~~~~p~~~~~~~~la~-------~~-~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l 101 (346)
..-....+++|++ ++.++++ .. .++|.+|+..+++... +.......+...+..+++ +++ |+ ++
T Consensus 15 ~~~~~~~~~~~~~----~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~--~~~~g~-l~ 86 (314)
T 1pjx_A 15 EDIPGAEGPVFDK----NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPEVNGYGGIPAGCQC--DRDANQ-LF 86 (314)
T ss_dssp CCCTTCEEEEECT----TSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EECCEETTEECCEEEEEE--CSSSSE-EE
T ss_pred ccCCCccCceECC----CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEecccCCCCCCCceEEE--ecCCCc-EE
Confidence 3344568899987 6788877 33 4459999977665432 221000112234555554 488 65 44
Q ss_pred EEeecCCeEEEEEccCcceeee-ecc----CCCceEEEEEeCCCCceEEEeeCC---------------CCEEEEecCCC
Q 019117 102 VAGGINGIIRVIDVSNEKLHKS-FVG----HGDSINEIRTQPLKPSLVVSASKD---------------ESVRLWNVQTG 161 (346)
Q Consensus 102 ~~~~~dg~i~iwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~l~s~~~d---------------~~i~iwd~~~~ 161 (346)
++. ..+.|.+||.. ++.... ... ....+.++++.+ ++.++++...+ +.|..||.. +
T Consensus 87 v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g 162 (314)
T 1pjx_A 87 VAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G 162 (314)
T ss_dssp EEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S
T ss_pred EEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-C
Confidence 444 34579999988 665433 221 124588999999 77777776554 567777765 5
Q ss_pred eeEEEecccCCCCcceEEEEec----CCCCcE-EEEEecCCeEEEEEccc-cceeeeeceeecCCCCCCCCccceeceEE
Q 019117 162 ICILIFAGAGGHRNEVLSVDFH----PSDIYR-IASCGMDNTVKIWSMKE-FWTYVEKSFTWTDLPSKFPTKYVQFPVFI 235 (346)
Q Consensus 162 ~~~~~~~~~~~~~~~v~~~~~~----~~~~~~-l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (346)
+...... +......++++ | +++. +++...++.|.+||+.. ..... ......
T Consensus 163 ~~~~~~~----~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~------------------~~~~~~ 219 (314)
T 1pjx_A 163 QMIQVDT----AFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIEN------------------KKVWGH 219 (314)
T ss_dssp CEEEEEE----EESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEE------------------EEEEEE
T ss_pred CEEEecc----CCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCcccc------------------ceEEEE
Confidence 5443332 34456889999 9 6654 45555678999999862 11000 001112
Q ss_pred Eeecc-cceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC
Q 019117 236 ASVHS-NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE 312 (346)
Q Consensus 236 ~~~~~-~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d 312 (346)
+..+. .....++++ |+++++...++.|.+||..+++ .+..+..+...+.+++|+++++ .++++...+
T Consensus 220 ~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~---------~~~~~~~~~~~~~~i~~~~dg~-~l~v~~~~~ 289 (314)
T 1pjx_A 220 IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ---------PKMRIRCPFEKPSNLHFKPQTK-TIFVTEHEN 289 (314)
T ss_dssp CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS---------CSEEEECSSSCEEEEEECTTSS-EEEEEETTT
T ss_pred CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCc---------EeEEEeCCCCCceeEEECCCCC-EEEEEeCCC
Confidence 22222 446677777 7777777678899999988655 3334444556789999999983 255666677
Q ss_pred CcEEEEEcCC
Q 019117 313 GKIFVWELQS 322 (346)
Q Consensus 313 g~i~iwd~~~ 322 (346)
+.|..|++..
T Consensus 290 ~~l~~~~~~~ 299 (314)
T 1pjx_A 290 NAVWKFEWQR 299 (314)
T ss_dssp TEEEEEECSS
T ss_pred CeEEEEeCCC
Confidence 8999999875
No 199
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.62 E-value=9.5e-14 Score=114.59 Aligned_cols=146 Identities=10% Similarity=0.095 Sum_probs=113.4
Q ss_pred CceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCce--------eeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117 34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGV--------IAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 105 (346)
.+++.+++++ ...++++|+.+++++|++..... ....... .... |+.++| +++ +|+++
T Consensus 38 ~~~nlLais~----~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~---~lp~-V~~l~f----d~~-~L~v~- 103 (388)
T 1xip_A 38 ASLQNLDISN----SKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK---EIPD-VIFVCF----HGD-QVLVS- 103 (388)
T ss_dssp SCCBCEEEET----TTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE---ECTT-EEEEEE----ETT-EEEEE-
T ss_pred ccccEEEEcC----CCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe---eCCC-eeEEEE----CCC-EEEEE-
Confidence 3689999998 67899999999999999765431 1110011 1334 877777 677 88888
Q ss_pred cCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCC
Q 019117 106 INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS 185 (346)
Q Consensus 106 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 185 (346)
.++.|++||+.+.........|...+.++.+.+ . .+++++.||.|.+||+.+++... +...|++++|+|
T Consensus 104 ~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~~~~~-------~~~~Vs~v~WSp- 172 (388)
T 1xip_A 104 TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQ-------LAQNVTSFDVTN- 172 (388)
T ss_dssp ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEE-------EEESEEEEEECS-
T ss_pred cCCcEEEEEchhhhccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccCCcccc-------ccCCceEEEEcC-
Confidence 889999999988776666777888899888876 2 38888999999999999877643 345899999999
Q ss_pred CCcEEEEEecCCeEEEEEccc
Q 019117 186 DIYRIASCGMDNTVKIWSMKE 206 (346)
Q Consensus 186 ~~~~l~s~~~d~~i~iwd~~~ 206 (346)
.+ ++.|..||.+++|+...
T Consensus 173 kG--~~vg~~dg~i~~~~~~~ 191 (388)
T 1xip_A 173 SQ--LAVLLKDRSFQSFAWRN 191 (388)
T ss_dssp SE--EEEEETTSCEEEEEEET
T ss_pred Cc--eEEEEcCCcEEEEcCCC
Confidence 66 67789999999998876
No 200
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.62 E-value=9e-12 Score=100.74 Aligned_cols=262 Identities=7% Similarity=-0.049 Sum_probs=169.8
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 108 (346)
......+.++++.+ ++.++++...++ |.+|+.. ++. ..+. .......+..+++. ++|. +.++...++
T Consensus 16 ~~~~~~p~~i~~d~----~g~l~v~~~~~~~v~~~~~~-~~~-~~~~---~~~~~~~~~~i~~~--~~g~-l~v~~~~~~ 83 (300)
T 2qc5_A 16 SIPDSGPYGITSSE----DGKVWFTQHKANKISSLDQS-GRI-KEFE---VPTPDAKVMCLIVS--SLGD-IWFTENGAN 83 (300)
T ss_dssp SSTTCCEEEEEECT----TSCEEEEETTTTEEEEECTT-SCE-EEEE---CSSTTCCEEEEEEC--TTSC-EEEEETTTT
T ss_pred CCCCCCcceeeECC----CCCEEEEcCCCCeEEEECCC-Cce-EEEE---CCCCCCcceeEEEC--CCCC-EEEEecCCC
Confidence 34456789999988 678888776544 9999966 443 2222 11223455556554 8887 777666678
Q ss_pred eEEEEEccCcceee-eeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117 109 IIRVIDVSNEKLHK-SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI 187 (346)
Q Consensus 109 ~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 187 (346)
.|..+|.. ++... .+......+..+++.+ ++.++++...++.|..+|.. ++... +.. ......+.++++.+ ++
T Consensus 84 ~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~-~~~-~~~~~~~~~i~~d~-~g 157 (300)
T 2qc5_A 84 KIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYE-YDL-PNKGSYPAFITLGS-DN 157 (300)
T ss_dssp EEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEE-EEC-SSTTCCEEEEEECT-TS
T ss_pred eEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEE-ccC-CCCCCCceeEEECC-CC
Confidence 99999987 55432 2232346789999998 77777777767899999987 55442 221 02456789999998 77
Q ss_pred cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEE
Q 019117 188 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLW 265 (346)
Q Consensus 188 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iw 265 (346)
+++++...++.|..||... .. .......+...+..+.++ +++.++....+.|.+|
T Consensus 158 ~l~v~~~~~~~i~~~~~~g-~~----------------------~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 214 (300)
T 2qc5_A 158 ALWFTENQNNSIGRITNTG-KL----------------------EEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRI 214 (300)
T ss_dssp SEEEEETTTTEEEEECTTC-CE----------------------EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred CEEEEecCCCeEEEECCCC-cE----------------------EEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEE
Confidence 7777766678899998832 11 011111223456777776 6666665567789999
Q ss_pred cCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee---eeEEEEEecC
Q 019117 266 EPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI---CFSLHVKYNP 342 (346)
Q Consensus 266 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~sp 342 (346)
+. +++. ...........+.++++++++ .+.++...++.|..||. +++. ..+... ..+.++.++|
T Consensus 215 ~~-~g~~--------~~~~~~~~~~~~~~i~~d~~g--~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~~~ 281 (300)
T 2qc5_A 215 TT-TGEI--------SEYDIPTPNARPHAITAGKNS--EIWFTEWGANQIGRITN-DNTI-QEYQLQTENAEPHGITFGK 281 (300)
T ss_dssp CT-TCCE--------EEEECSSTTCCEEEEEECSTT--CEEEEETTTTEEEEECT-TSCE-EEEECCSTTCCCCCEEECT
T ss_pred cC-CCcE--------EEEECCCCCCCceEEEECCCC--CEEEeccCCCeEEEECC-CCcE-EEEECCccCCccceeEeCC
Confidence 98 3321 111122334568899999998 56666666789999998 4443 233232 3467788888
Q ss_pred CCC
Q 019117 343 QSV 345 (346)
Q Consensus 343 dg~ 345 (346)
+|+
T Consensus 282 ~g~ 284 (300)
T 2qc5_A 282 DGS 284 (300)
T ss_dssp TSC
T ss_pred CCC
Confidence 876
No 201
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.60 E-value=2.5e-12 Score=108.48 Aligned_cols=260 Identities=9% Similarity=-0.049 Sum_probs=155.7
Q ss_pred CceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC--eE
Q 019117 34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING--II 110 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg--~i 110 (346)
.....|+|+| +++++++...++ |++||..++........ ..... ++| +++++ .|+++..++ .|
T Consensus 131 ~~P~~la~d~----~g~lyv~d~~~~~I~~id~~~g~~~~~~~~------~~~~~-ia~--~~~g~-~l~~~d~~~~~~I 196 (409)
T 3hrp_A 131 KYMWGIAAVG----NNTVLAYQRDDPRVRLISVDDNKVTTVHPG------FKGGK-PAV--TKDKQ-RVYSIGWEGTHTV 196 (409)
T ss_dssp CCEEEEEECS----TTEEEEEETTTTEEEEEETTTTEEEEEEET------CCBCB-CEE--CTTSS-EEEEEBSSTTCEE
T ss_pred CCceEEEEeC----CCCEEEEecCCCcEEEEECCCCEEEEeecc------CCCCc-eeE--ecCCC-cEEEEecCCCceE
Confidence 4578899988 678888877655 99999876655443332 11222 444 48898 788777655 78
Q ss_pred EEEEccCcceeeee----ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecc--cCCCCcce-E-EEEe
Q 019117 111 RVIDVSNEKLHKSF----VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG--AGGHRNEV-L-SVDF 182 (346)
Q Consensus 111 ~iwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~v-~-~~~~ 182 (346)
.+++...+.....+ ......+.+++++| +...|+.+..++.|..||..++... .+.. ..+....- . .++|
T Consensus 197 ~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p-~~g~lyv~d~~~~I~~~d~~~~~~~-~~~~~~~~g~~~~~P~~~ia~ 274 (409)
T 3hrp_A 197 YVYMKASGWAPTRIGQLGSTFSGKIGAVALDE-TEEWLYFVDSNKNFGRFNVKTQEVT-LIKQLELSGSLGTNPGPYLIY 274 (409)
T ss_dssp EEEEGGGTTCEEEEEECCTTSCSCCCBCEECT-TSSEEEEECTTCEEEEEETTTCCEE-EEEECCCCSCCCCSSCCEEEE
T ss_pred EEEEcCCCceeEEeeeccchhcCCcEEEEEeC-CCCeEEEEECCCcEEEEECCCCCEE-EEecccccCCCCCCccccEEE
Confidence 89988766543333 22456678999999 4445555777889999999876533 2210 00122222 3 9999
Q ss_pred cCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe-ec
Q 019117 183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS-VD 259 (346)
Q Consensus 183 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~-~d 259 (346)
+|.++.++++-..++.|+.|+.......... ........ . . ......-.....++++ |+++++-. .+
T Consensus 275 ~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g----~~~~~g~~--d-g---~~~~~~~~~P~gia~d~dG~lyvad~~~~ 344 (409)
T 3hrp_A 275 YFVDSNFYMSDQNLSSVYKITPDGECEWFCG----SATQKTVQ--D-G---LREEALFAQPNGMTVDEDGNFYIVDGFKG 344 (409)
T ss_dssp ETTTTEEEEEETTTTEEEEECTTCCEEEEEE----CTTCCSCB--C-E---EGGGCBCSSEEEEEECTTCCEEEEETTTT
T ss_pred eCCCCEEEEEeCCCCEEEEEecCCCEEEEEe----CCCCCCcC--C-C---cccccEeCCCeEEEEeCCCCEEEEeCCCC
Confidence 9955777777777889999987652110000 00000000 0 0 0000011335677887 77777777 78
Q ss_pred CeEEEEcCCCCCCCCCCcccccc-----ccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117 260 NEIVLWEPKMKEQSPGEGTADIL-----QKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (346)
Q Consensus 260 ~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~ 321 (346)
++|+.|++.+++........... ......-.....+++++++ .++++-..++.|+.++++
T Consensus 345 ~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g--~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 345 YCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEG--GYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp CEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS--EEEEEESTTCEEEEEEEC
T ss_pred CEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC--CEEEEECCCCeEEEEEeC
Confidence 99999997665421100000000 0000112457889999997 688888888888887753
No 202
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.59 E-value=1.6e-11 Score=102.16 Aligned_cols=278 Identities=9% Similarity=-0.078 Sum_probs=164.4
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEc-----------CCcEEEEEeccCceeeeEeee-ec-CCCccceEEE
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVG-----------GNRVTVYQCLEGGVIAALQSY-VD-EDKEESFYTV 89 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~-----------~~~v~i~~~~~~~~~~~~~~~-~~-~~~~~~v~~~ 89 (346)
.+...++.....+ .++|+| +++.++++. ++.|.+||..+.+.+..+..- .. ........
T Consensus 57 ~~~~~~i~~g~~p--~i~~sp----Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~-- 128 (373)
T 2mad_H 57 GSILGHVNGGFLP--NPVAAH----SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSW-- 128 (373)
T ss_pred CeEEEEecCCCCC--CeEECC----CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCcc--
Confidence 3344455433344 899999 788888775 234999999887776665421 00 00011122
Q ss_pred EEEEcCCCCcEEEEeec--CCeEEEEEccCcceeee-eccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEE
Q 019117 90 SWACNVDGIPFLVAGGI--NGIIRVIDVSNEKLHKS-FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI 166 (346)
Q Consensus 90 ~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 166 (346)
.+.++|||+ +|+++.. ++.|.++| .+++.+.. +... . ++.+.|.+...+++.+.||.+.++|. +++.+..
T Consensus 129 ~~~~spDG~-~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~ 201 (373)
T 2mad_H 129 MNANTPNNA-DLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA 201 (373)
T ss_pred ceEECCCCC-EEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence 344559999 8887764 57899999 99988877 6532 2 24555645667788888999999999 8876643
Q ss_pred ecc---cCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce
Q 019117 167 FAG---AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV 243 (346)
Q Consensus 167 ~~~---~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 243 (346)
... ..+.........+.+.++.+++.. ..+.+.+.|+..........+..... ........+...
T Consensus 202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~-----------~~~~~~~~p~g~ 269 (373)
T 2mad_H 202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSG-----------GRKADTWRPGGW 269 (373)
T ss_pred EeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCC-----------cccccceecCce
Confidence 320 001111122345566344444444 67889999986532111110000000 000011112223
Q ss_pred EEEEec--CCEEEEEee----------cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc-
Q 019117 244 DCNRWL--GDFILSKSV----------DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN- 310 (346)
Q Consensus 244 ~~~~~~--~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~- 310 (346)
..+.++ ++.+.++.. ++.|.++|+.+.+ .+.++... ....+++|+||++ .+++++.
T Consensus 270 ~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~---------vv~~i~~g-~~p~~i~~s~Dg~-~~l~v~~~ 338 (373)
T 2mad_H 270 QQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ---------TSSQISLG-HDVDAISVAQDGG-PDLYALSA 338 (373)
T ss_pred EeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE---------EEEEEECC-CCcCeEEECCCCC-eEEEEEcC
Confidence 334444 566655432 3579999999876 55555433 2578999999994 2666666
Q ss_pred CCCcEEEEEcCCCCccee-eeeeeeEEEE
Q 019117 311 REGKIFVWELQSSPPVLI-ARLICFSLHV 338 (346)
Q Consensus 311 ~dg~i~iwd~~~~~~~~~-~~~~~~~~~~ 338 (346)
.++.|.+||+.+++.+.. ......+..+
T Consensus 339 ~~~~V~ViD~~t~~vv~~i~~vG~~P~~~ 367 (373)
T 2mad_H 339 GTEVLHIYDAGAGDQDQSTVELGSGPQVL 367 (373)
T ss_pred CCCeEEEEECCCCCEEeeecCCCCCCcEE
Confidence 589999999999987765 3444444433
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.59 E-value=2e-12 Score=117.87 Aligned_cols=219 Identities=14% Similarity=0.018 Sum_probs=134.4
Q ss_pred EEEEcCCCCcEEEEeecC-----CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCC------------
Q 019117 90 SWACNVDGIPFLVAGGIN-----GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDES------------ 152 (346)
Q Consensus 90 ~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~------------ 152 (346)
.+.++|||+ +|+.+..+ ..|++||+.+++.+.... +...+..++|+| + +.|+.++.++.
T Consensus 167 ~~~~SPDG~-~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~~~~~~ 242 (741)
T 1yr2_A 167 AWAASDDGR-LLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQALNYN 242 (741)
T ss_dssp EEEECTTSS-EEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEEST-T-SEEEEEECCCC--------CCCC
T ss_pred eEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEEC-C-CEEEEEEecCcccccccccCCCC
Confidence 344559999 77766543 469999999998754321 222346789999 6 77777766554
Q ss_pred --EEEEecCCCee--EEEecccCCCCcceEEEEecCCCCcEEEEEecCC-----eEEEEEccccceeeeeceeecCCCCC
Q 019117 153 --VRLWNVQTGIC--ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-----TVKIWSMKEFWTYVEKSFTWTDLPSK 223 (346)
Q Consensus 153 --i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~ 223 (346)
|++|++.+++. ...+.. ..+...+..+.|+| ++++|+..+.++ .|.+||+.....
T Consensus 243 ~~v~~~~lgt~~~~~~lv~~~-~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~-------------- 306 (741)
T 1yr2_A 243 QTVWLHRLGTPQSADQPVFAT-PELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKI-------------- 306 (741)
T ss_dssp CEEEEEETTSCGGGCEEEECC-TTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEE--------------
T ss_pred CEEEEEECCCCchhCEEEecc-CCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCC--------------
Confidence 88999877652 222221 13344688999999 887777666543 899999876310
Q ss_pred CCCccceeceEEEeecccceEEEEec-CCEEEEEee----cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEe
Q 019117 224 FPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSV----DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS 298 (346)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 298 (346)
.....+..+...+....+. ++.|+..+. ++.|.+||+.+.. . . ....+..+...+..++++
T Consensus 307 -------~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~----~--~~~l~~~~~~~l~~~~~~ 372 (741)
T 1yr2_A 307 -------GPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGST-P----R--FDTVVPESKDNLESVGIA 372 (741)
T ss_dssp -------CCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSS-C----E--EEEEECCCSSEEEEEEEE
T ss_pred -------cccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCc-c----c--cEEEecCCCCeEEEEEEE
Confidence 0022333333333333223 777777765 3459999987641 0 0 112223334456667776
Q ss_pred ecCCcceEEEEcCCCcEEEEEcC-CCCcceeeee--eeeEEEEEecCCCC
Q 019117 299 CDFHYNAAAIGNREGKIFVWELQ-SSPPVLIARL--ICFSLHVKYNPQSV 345 (346)
Q Consensus 299 ~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~--~~~~~~~~~spdg~ 345 (346)
++ .++++...|+..+||.+. +++....... .+.+..+.++||++
T Consensus 373 -~~--~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~ 419 (741)
T 1yr2_A 373 -GN--RLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDR 419 (741)
T ss_dssp -BT--EEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCS
T ss_pred -CC--EEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCC
Confidence 33 578888889987777654 3443333333 34577899999885
No 204
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.59 E-value=1.9e-11 Score=98.80 Aligned_cols=232 Identities=9% Similarity=0.037 Sum_probs=144.3
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 108 (346)
..+..-.-+..|+|. ++.++++...++ |..||..++.. ..+. ....+..+++. ++|+ ++++. ++
T Consensus 9 ~~~~~~~Egp~w~~~---~~~l~~~d~~~~~i~~~d~~~~~~-~~~~------~~~~~~~i~~~--~dG~-l~v~~--~~ 73 (297)
T 3g4e_A 9 PENCRCGESPVWEEV---SNSLLFVDIPAKKVCRWDSFTKQV-QRVT------MDAPVSSVALR--QSGG-YVATI--GT 73 (297)
T ss_dssp CCCCSBEEEEEEETT---TTEEEEEETTTTEEEEEETTTCCE-EEEE------CSSCEEEEEEB--TTSS-EEEEE--TT
T ss_pred ccCCccccCCeEECC---CCEEEEEECCCCEEEEEECCCCcE-EEEe------CCCceEEEEEC--CCCC-EEEEE--CC
Confidence 344445668889882 356777766555 99999876554 2222 23456666654 9998 55553 56
Q ss_pred eEEEEEccCcceeeeecc----CCCceEEEEEeCCCCceEEEeeCC---------CCEEEEecCC-CeeEEEecccCCCC
Q 019117 109 IIRVIDVSNEKLHKSFVG----HGDSINEIRTQPLKPSLVVSASKD---------ESVRLWNVQT-GICILIFAGAGGHR 174 (346)
Q Consensus 109 ~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~-~~~~~~~~~~~~~~ 174 (346)
.|.+||..+++....... ....++.+++.| ++.++++.... ..-.+|.+.. ++...... ..
T Consensus 74 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~----~~ 148 (297)
T 3g4e_A 74 KFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD----QV 148 (297)
T ss_dssp EEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE----EE
T ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee----cc
Confidence 899999988765432221 124578999999 77766654321 2345555543 33333222 44
Q ss_pred cceEEEEecCCCCc-EEEEEecCCeEEEEEcc--ccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--
Q 019117 175 NEVLSVDFHPSDIY-RIASCGMDNTVKIWSMK--EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-- 249 (346)
Q Consensus 175 ~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 249 (346)
...+.++|+| +++ ++++.+.++.|.+||+. +..... ......+..+......++++
T Consensus 149 ~~pngi~~sp-dg~~lyv~~~~~~~i~~~~~d~~~G~~~~------------------~~~~~~~~~~~~~p~g~~~d~~ 209 (297)
T 3g4e_A 149 DISNGLDWSL-DHKIFYYIDSLSYSVDAFDYDLQTGQISN------------------RRSVYKLEKEEQIPDGMCIDAE 209 (297)
T ss_dssp SBEEEEEECT-TSCEEEEEEGGGTEEEEEEECTTTCCEEE------------------EEEEEECCGGGCEEEEEEEBTT
T ss_pred ccccceEEcC-CCCEEEEecCCCCcEEEEeccCCCCcccC------------------cEEEEECCCCCCCCCeeEECCC
Confidence 5678999999 665 45666668899999974 211000 01122222234456778887
Q ss_pred CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEe-ecCCcceEEEEc
Q 019117 250 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS-CDFHYNAAAIGN 310 (346)
Q Consensus 250 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~~~l~~~~ 310 (346)
|++.++....+.|..||..+++ .+..+..+...+++++|. |+++ .++++..
T Consensus 210 G~lwva~~~~~~v~~~d~~tG~---------~~~~i~~p~~~~t~~~f~g~d~~-~L~vt~~ 261 (297)
T 3g4e_A 210 GKLWVACYNGGRVIRLDPVTGK---------RLQTVKLPVDKTTSCCFGGKNYS-EMYVTCA 261 (297)
T ss_dssp SCEEEEEETTTEEEEECTTTCC---------EEEEEECSSSBEEEEEEESGGGC-EEEEEEB
T ss_pred CCEEEEEcCCCEEEEEcCCCce---------EEEEEECCCCCceEEEEeCCCCC-EEEEEcC
Confidence 7666666667889999998776 566666666789999999 8874 3334433
No 205
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.56 E-value=3.9e-11 Score=96.89 Aligned_cols=239 Identities=10% Similarity=-0.058 Sum_probs=153.6
Q ss_pred CCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeE
Q 019117 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII 110 (346)
Q Consensus 32 h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 110 (346)
+...+.++++.+ ++.++++...++ |..|+.. +. ...+. .......+..+++. ++|. ++++...++.|
T Consensus 55 ~~~~~~~i~~~~----~g~l~v~~~~~~~i~~~~~~-g~-~~~~~---~~~~~~~~~~i~~~--~~g~-l~v~~~~~~~i 122 (299)
T 2z2n_A 55 PDAKVMCLTISS----DGEVWFTENAANKIGRITKK-GI-IKEYT---LPNPDSAPYGITEG--PNGD-IWFTEMNGNRI 122 (299)
T ss_dssp TTCCEEEEEECT----TSCEEEEETTTTEEEEECTT-SC-EEEEE---CSSTTCCEEEEEEC--TTSC-EEEEETTTTEE
T ss_pred ccCceeeEEECC----CCCEEEeCCCCCeEEEECCC-Cc-EEEEe---CCCcCCCceeeEEC--CCCC-EEEEecCCceE
Confidence 456788999987 678888877555 9999864 33 22222 11133455555554 8887 77777678899
Q ss_pred EEEEccCcceee-eeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcE
Q 019117 111 RVIDVSNEKLHK-SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR 189 (346)
Q Consensus 111 ~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 189 (346)
.+||. +++... ....+...+..+++.+ ++.++++...++.|..||. +++....... .....+.++++++ ++.+
T Consensus 123 ~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~--~~~~~~~~i~~~~-~g~l 196 (299)
T 2z2n_A 123 GRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIP--TPASGPVGITKGN-DDAL 196 (299)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECS--STTCCEEEEEECT-TSSE
T ss_pred EEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCC--CCCCcceeEEECC-CCCE
Confidence 99998 554432 2233456789999998 7777777767789999998 6655432111 2445788999998 7787
Q ss_pred EEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcC
Q 019117 190 IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEP 267 (346)
Q Consensus 190 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~ 267 (346)
+++...++.|.+||. +... .......+...+.++.++ |++.++...++.|..||.
T Consensus 197 ~v~~~~~~~i~~~~~-~g~~----------------------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 197 WFVEIIGNKIGRITT-SGEI----------------------TEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp EEEETTTTEEEEECT-TCCE----------------------EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred EEEccCCceEEEECC-CCcE----------------------EEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 777666889999998 4211 011122234567788887 565555556789999998
Q ss_pred CCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 268 KMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
. ++. .......+...+.++++ +++ .+.++.+ .+.|..++..+++
T Consensus 254 ~-g~~--------~~~~~~~~~~~~~~i~~-~~g--~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 254 N-NII--------EEYPIQIKSAEPHGICF-DGE--TIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp T-TEE--------EEEECSSSSCCEEEEEE-CSS--CEEEEET-TTEEEEEEEC---
T ss_pred C-Cce--------EEEeCCCCCCccceEEe-cCC--CEEEEec-CCcEEEEEcCccc
Confidence 3 321 11112233457889999 777 4555544 5678788877653
No 206
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.55 E-value=1.8e-11 Score=101.76 Aligned_cols=240 Identities=7% Similarity=-0.134 Sum_probs=150.4
Q ss_pred cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee----------cCCeEEEEEccCcceeeeeccC-
Q 019117 59 RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG----------INGIIRVIDVSNEKLHKSFVGH- 127 (346)
Q Consensus 59 ~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~- 127 (346)
.|.++|..+++.+..+.. +.. ..+.+ +|||+ +++++. .++.|.+||..+.+.+..+...
T Consensus 48 ~v~v~D~~t~~~~~~i~~------g~~-p~i~~--spDg~-~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~ 117 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNG------GFL-PNPVA--AHSGS-EFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD 117 (373)
T ss_pred EEEEEECCCCeEEEEecC------CCC-CCeEE--CCCCC-EEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCC
Confidence 579999988877655542 111 13444 59999 777765 3678999999998887766432
Q ss_pred ------CCceEEEEEeCCCCceEEEeeC--CCCEEEEecCCCeeEEE-ecccCCCCcceEEEEecCCCCcEEEEEecCCe
Q 019117 128 ------GDSINEIRTQPLKPSLVVSASK--DESVRLWNVQTGICILI-FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT 198 (346)
Q Consensus 128 ------~~~v~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 198 (346)
......+.|+| ++++|+++.. ++.|.++| .+++.+.. +. .... +.+.|.+...+++.+.||.
T Consensus 118 ~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~----~~~~---~~~~~~~~~~~~~~~~dg~ 188 (373)
T 2mad_H 118 APRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS----SPTC---YHIHPGAPSTFYLLCAQGG 188 (373)
T ss_pred ccccccCCCccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC----CCce---EEEEeCCCceEEEEcCCCC
Confidence 12346899999 7888887764 57899999 99988877 65 2222 4445545566777888999
Q ss_pred EEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce-EEEEec--CCEEEEEeecCeEEEEcCCCCCCCCC
Q 019117 199 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV-DCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPG 275 (346)
Q Consensus 199 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~ 275 (346)
+.++|. ..+....... .+.. .....+ ....+. +..++..+.++.+.+.|+......
T Consensus 189 ~~~vd~-~g~~~~~~~~---------------~~~~---~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~-- 247 (373)
T 2mad_H 189 LAKTDH-AGGAAGAGLV---------------GAML---TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGAT-- 247 (373)
T ss_pred EEEEEC-CCcEEEEEec---------------cccc---cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcce--
Confidence 999999 6332100000 0000 001111 111121 333333346778999998754311
Q ss_pred Ccccccccccc----------CCCcCeeEEEEeecCCcceEEEEc----------CCCcEEEEEcCCCCcceeeeeeeeE
Q 019117 276 EGTADILQKYP----------VPECDIWFIKFSCDFHYNAAAIGN----------REGKIFVWELQSSPPVLIARLICFS 335 (346)
Q Consensus 276 ~~~~~~~~~~~----------~~~~~v~~~~~s~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~ 335 (346)
.+..+. ........+.++|++. .+.+.. ..+.|.++|+.+++.+..+...+.+
T Consensus 248 -----v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~--~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p 320 (373)
T 2mad_H 248 -----NKAPIDALSGGRKADTWRPGGWQQVAYLKSSD--GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDV 320 (373)
T ss_pred -----EeeeeeecCCcccccceecCceEeEEECCCCC--EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCc
Confidence 111111 0112344578999984 444432 2357999999999888888777778
Q ss_pred EEEEecCCCC
Q 019117 336 LHVKYNPQSV 345 (346)
Q Consensus 336 ~~~~~spdg~ 345 (346)
..++|+|||+
T Consensus 321 ~~i~~s~Dg~ 330 (373)
T 2mad_H 321 DAISVAQDGG 330 (373)
T ss_pred CeEEECCCCC
Confidence 9999999997
No 207
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.54 E-value=1.8e-13 Score=112.98 Aligned_cols=166 Identities=11% Similarity=0.016 Sum_probs=122.6
Q ss_pred ceEEEEEeCCCCceEEEeeCCCCEEEEecCCCe-----------eEEEecccCCCCcceEEEEecCCCCcEEEEEecCCe
Q 019117 130 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-----------CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT 198 (346)
Q Consensus 130 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 198 (346)
.++.+++++ ...++++|+.++ +.+|++.+.+ ..... .+.. |+.++| ++.+|+++ .++.
T Consensus 39 ~~nlLais~-~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~----~lp~-V~~l~f---d~~~L~v~-~~~~ 107 (388)
T 1xip_A 39 SLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK----EIPD-VIFVCF---HGDQVLVS-TRNA 107 (388)
T ss_dssp CCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE----ECTT-EEEEEE---ETTEEEEE-ESSE
T ss_pred cccEEEEcC-CCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe----eCCC-eeEEEE---CCCEEEEE-cCCc
Confidence 689999999 888999999875 6679875433 11222 2556 999999 56777777 8899
Q ss_pred EEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCcc
Q 019117 199 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGT 278 (346)
Q Consensus 199 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 278 (346)
|++||+++.. .......|...+.++.+....+++++.||.|.+||+.++.
T Consensus 108 l~v~dv~sl~-----------------------~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~------- 157 (388)
T 1xip_A 108 LYSLDLEELS-----------------------EFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKS------- 157 (388)
T ss_dssp EEEEESSSTT-----------------------CEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCC-------
T ss_pred EEEEEchhhh-----------------------ccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCc-------
Confidence 9999998833 2223445666777777775458999999999999999765
Q ss_pred ccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCc--ceee------e----eeeeEEEEEecCCCCC
Q 019117 279 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP--VLIA------R----LICFSLHVKYNPQSVY 346 (346)
Q Consensus 279 ~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~------~----~~~~~~~~~~spdg~~ 346 (346)
... +...|++++|||+| ++.|..||.+++|+...++. ...+ . ...++.++.|.++++|
T Consensus 158 --~~~----~~~~Vs~v~WSpkG----~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~f 227 (388)
T 1xip_A 158 --TKQ----LAQNVTSFDVTNSQ----LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDF 227 (388)
T ss_dssp --EEE----EEESEEEEEECSSE----EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEE
T ss_pred --ccc----ccCCceEEEEcCCc----eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeE
Confidence 111 34589999999998 67788999999998877663 2222 1 2456899999998754
No 208
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.53 E-value=5.7e-12 Score=103.62 Aligned_cols=252 Identities=7% Similarity=-0.047 Sum_probs=161.6
Q ss_pred CccEEEEEcC-----C-cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee----------cCCeEE
Q 019117 48 YFNVFATVGG-----N-RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG----------INGIIR 111 (346)
Q Consensus 48 ~~~~la~~~~-----~-~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~----------~dg~i~ 111 (346)
++..+.+... + .|.++|..+++.+..+..- ..+ . +. ++|||+ +++++. .++.|.
T Consensus 43 d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG-----~~P-~-va--~spDG~-~lyVan~~~~r~~~G~~~~~Vs 112 (386)
T 3sjl_D 43 DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-----FLP-N-PV--VADDGS-FIAHASTVFSRIARGERTDYVE 112 (386)
T ss_dssp CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-----SSC-E-EE--ECTTSS-CEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC-----CCC-c-EE--ECCCCC-EEEEEcccccccccCCCCCEEE
Confidence 5555555543 3 4999999998888877641 122 2 44 459999 666554 367899
Q ss_pred EEEccCcceeeeeccCC-------CceEEEEEeCCCCceEEEeeC--CCCEEEEecCCCeeEEEecccCCCCcceEEEEe
Q 019117 112 VIDVSNEKLHKSFVGHG-------DSINEIRTQPLKPSLVVSASK--DESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 182 (346)
Q Consensus 112 iwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 182 (346)
+||..+.+.+..+.-.. .....++|+| ++++++++.. ++.|.++|+.+++.+..+.. .+. ...+
T Consensus 113 viD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v----~g~--~~~~ 185 (386)
T 3sjl_D 113 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV----PDC--YHIF 185 (386)
T ss_dssp EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEEC----CSE--EEEE
T ss_pred EEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC----CCc--ceee
Confidence 99999999888775321 2456799999 7787777653 68999999999999998862 221 2223
Q ss_pred cCCCCcEEEEEecCCeEEEEEccc-cceeeeeceeecCCCCCCCCccceeceEEEeecccceE-EEEec--CCEEEEEee
Q 019117 183 HPSDIYRIASCGMDNTVKIWSMKE-FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD-CNRWL--GDFILSKSV 258 (346)
Q Consensus 183 ~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~--~~~l~~~~~ 258 (346)
|.+...+++.+.||++.+.++.. .+...... ..+. .....+. ...|. ...++-.+.
T Consensus 186 -P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~-------~~~~------------~~~~~~~~~~~~~~~dG~~~~vs~ 245 (386)
T 3sjl_D 186 -PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT-------EVFH------------PEDEFLINHPAYSQKAGRLVWPTY 245 (386)
T ss_dssp -EEETTEEEEEETTSCEEEEECCSSSCCEEEEC-------CCCS------------CTTSCBCSCCEEETTTTEEEEEBT
T ss_pred -cCCCceeEEECCCCCEEEEECCCCCeEEEeec-------ceec------------cccccccccceeEcCCCcEEEEeC
Confidence 43566777888899999998876 22110000 0000 0000010 11332 233334566
Q ss_pred cCeEEEEcCCCCCCCCCCcccccccccc----------CCCcCeeEEEEeecCCcceEEEEc----------CCCcEEEE
Q 019117 259 DNEIVLWEPKMKEQSPGEGTADILQKYP----------VPECDIWFIKFSCDFHYNAAAIGN----------REGKIFVW 318 (346)
Q Consensus 259 d~~i~iwd~~~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~s~~~~~~~l~~~~----------~dg~i~iw 318 (346)
+|.|.+.|+.+.... .+..+. ...+....++++++++ .+.... ..+.|.+.
T Consensus 246 ~g~V~v~d~~~~~~~-------v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~--~lyV~~~~~~~~~hk~~~~~V~vi 316 (386)
T 3sjl_D 246 TGKIHQIDLSSGDAK-------FLPAVEALTEAERADGWRPGGWQQVAYHRALD--RIYLLVDQRDEWRHKTASRFVVVL 316 (386)
T ss_dssp TSEEEEEECTTSSCE-------ECCCEESSCHHHHHTTEEECSSSCEEEETTTT--EEEEEEEECCTTCTTSCEEEEEEE
T ss_pred CCEEEEEECCCCcce-------eecceeccccccccccccCCCcceeeECCCCC--eEEEEeccccccccCCCCCEEEEE
Confidence 899999999765421 111111 1122344577888885 333332 13579999
Q ss_pred EcCCCCcceeeeeeeeEEEEEecCCCC
Q 019117 319 ELQSSPPVLIARLICFSLHVKYNPQSV 345 (346)
Q Consensus 319 d~~~~~~~~~~~~~~~~~~~~~spdg~ 345 (346)
|+.+++.+..+.+...+..++++|||+
T Consensus 317 D~~t~kv~~~i~vg~~~~~lavs~D~~ 343 (386)
T 3sjl_D 317 DAKTGERLAKFEMGHEIDSINVSQDEK 343 (386)
T ss_dssp ETTTCCEEEEEEEEEEECEEEECSSSS
T ss_pred ECCCCeEEEEEECCCCcceEEECCCCC
Confidence 999999988888888899999999996
No 209
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.49 E-value=1.8e-11 Score=102.51 Aligned_cols=285 Identities=11% Similarity=-0.017 Sum_probs=166.9
Q ss_pred ceeeeeecccCCCceEEEEEEeecCCCccEEEEEc-----------CCcEEEEEeccCceeeeEeeeecCC--CccceEE
Q 019117 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVG-----------GNRVTVYQCLEGGVIAALQSYVDED--KEESFYT 88 (346)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~-----------~~~v~i~~~~~~~~~~~~~~~~~~~--~~~~v~~ 88 (346)
..+.+.++..-..+ .++++| +++.|+++. .+.|.++|..+++.+..+..-.... ......
T Consensus 108 t~~vv~~I~vG~~P--gia~Sp----Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~- 180 (426)
T 3c75_H 108 TGRILGMTDGGFLP--HPVAAE----DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQW- 180 (426)
T ss_dssp TTEEEEEEEECSSC--EEEECT----TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG-
T ss_pred CCEEEEEEECCCCC--ceEECC----CCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcc-
Confidence 34445555444445 799999 677666664 2339999999988877765310000 001111
Q ss_pred EEEEEcCCCCcEEEEeec--CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEE
Q 019117 89 VSWACNVDGIPFLVAGGI--NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI 166 (346)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 166 (346)
.+.++|||+ +++++.. ++.|.+.|+.+++.+..+..... ....|.+...+++.+.||.+.+.+..+++....
T Consensus 181 -~~~~spDGk-~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~ 254 (426)
T 3c75_H 181 -MNALTPDNK-NLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVT 254 (426)
T ss_dssp -GSEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred -eEEEcCCCC-EEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence 234559999 7777763 58999999999998888764221 334443456777778889988888866655432
Q ss_pred ec-ccCCCCcce-EEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceE
Q 019117 167 FA-GAGGHRNEV-LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD 244 (346)
Q Consensus 167 ~~-~~~~~~~~v-~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (346)
.. .......++ ..+.+.+ ++..++..+..+.|.+.|+................. ...... ......
T Consensus 255 ~~~~~~v~~~p~~~~~~~~~-dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~--------~i~~g~---~p~g~~ 322 (426)
T 3c75_H 255 NTEVFHTEDELLINHPAFSL-RSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEA--------ERADDW---RPGGWQ 322 (426)
T ss_dssp ECCCCSCTTSCBCSCCEECT-TTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTT--------TGGGTE---EECSSS
T ss_pred eeeeeccCCCceeeEeeecC-CCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccc--------cccccc---ccCCce
Confidence 10 000111121 2356787 555555556678999999865322111110000000 000000 111111
Q ss_pred EEEec--CCEEEEEee----------cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEc-C
Q 019117 245 CNRWL--GDFILSKSV----------DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-R 311 (346)
Q Consensus 245 ~~~~~--~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~-~ 311 (346)
.+.++ ++.+++... ++.|.++|+.+.+ .+.++.... ....+.|+||++. ++++.. .
T Consensus 323 ~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k---------vv~~I~vg~-~P~gia~spDg~~-~lyv~n~~ 391 (426)
T 3c75_H 323 QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE---------RINKIELGH-EIDSINVSQDAEP-LLYALSAG 391 (426)
T ss_dssp CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC---------EEEEEEEEE-EECEEEECCSSSC-EEEEEETT
T ss_pred eeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe---------EEEEEECCC-CcCeEEEccCCCE-EEEEEcCC
Confidence 12343 565555532 4579999999887 566665433 5789999999942 555555 6
Q ss_pred CCcEEEEEcCCCCcceee-eeeeeEEEEEecCC
Q 019117 312 EGKIFVWELQSSPPVLIA-RLICFSLHVKYNPQ 343 (346)
Q Consensus 312 dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~spd 343 (346)
++.|.++|+.+++.+..+ ..... ..+..+||
T Consensus 392 s~~VsVID~~t~kvv~tI~~vG~~-P~~i~~~~ 423 (426)
T 3c75_H 392 TQTLHIYDAATGEELRSVDQLGRG-PQIITTHD 423 (426)
T ss_dssp TTEEEEEETTTCCEEEEECCCSSS-CCEEECCC
T ss_pred CCeEEEEECCCCCEEEEecCCCCC-CcEEEcCC
Confidence 999999999999877665 33333 33666665
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.49 E-value=9.5e-11 Score=94.66 Aligned_cols=221 Identities=7% Similarity=-0.001 Sum_probs=142.6
Q ss_pred EEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEe
Q 019117 88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF 167 (346)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 167 (346)
...|. +++..++++...++.|..||..+++. ..+. ....+.++++++ +++++++ . ++.|.+||..+++.....
T Consensus 17 gp~w~--~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~~~~ 89 (297)
T 3g4e_A 17 SPVWE--EVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAVVLA 89 (297)
T ss_dssp EEEEE--TTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEEEEE
T ss_pred CCeEE--CCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEEEEE
Confidence 45665 75443777777889999999987764 2332 456799999999 7775554 4 567999999887654433
Q ss_pred cccC-CCCcceEEEEecCCCCcEEEEEecC---------CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe
Q 019117 168 AGAG-GHRNEVLSVDFHPSDIYRIASCGMD---------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 237 (346)
Q Consensus 168 ~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (346)
.... .....++.++++| +++++++.... ..-.+|.+.... ......
T Consensus 90 ~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-----------------------~~~~~~ 145 (297)
T 3g4e_A 90 TVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDH-----------------------HVKKYF 145 (297)
T ss_dssp ECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-----------------------CEEEEE
T ss_pred ecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCC-----------------------CEEEEe
Confidence 2111 1234688999999 77766654322 234555544310 111122
Q ss_pred ecccceEEEEec--CCEE-EEEeecCeEEEEcCC--CCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC
Q 019117 238 VHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPK--MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE 312 (346)
Q Consensus 238 ~~~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d 312 (346)
.+......++|+ ++.| ++.+.++.|.+|++. ++.. ........+......+..+++.+++ .+.++...+
T Consensus 146 ~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~----~~~~~~~~~~~~~~~p~g~~~d~~G--~lwva~~~~ 219 (297)
T 3g4e_A 146 DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQI----SNRRSVYKLEKEEQIPDGMCIDAEG--KLWVACYNG 219 (297)
T ss_dssp EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCE----EEEEEEEECCGGGCEEEEEEEBTTS--CEEEEEETT
T ss_pred eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcc----cCcEEEEECCCCCCCCCeeEECCCC--CEEEEEcCC
Confidence 233445678887 6655 555668899999874 3321 0011222333334567889999998 567776677
Q ss_pred CcEEEEEcCCCCcceeeeee-eeEEEEEec-CCCC
Q 019117 313 GKIFVWELQSSPPVLIARLI-CFSLHVKYN-PQSV 345 (346)
Q Consensus 313 g~i~iwd~~~~~~~~~~~~~-~~~~~~~~s-pdg~ 345 (346)
+.|..||..+++.+..+..+ ..+++++|. ||++
T Consensus 220 ~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~ 254 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYS 254 (297)
T ss_dssp TEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGC
T ss_pred CEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCC
Confidence 88999999989877777766 468999998 8765
No 211
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.48 E-value=6.7e-12 Score=103.60 Aligned_cols=268 Identities=11% Similarity=0.022 Sum_probs=158.3
Q ss_pred eeeeeecccCCCceEEEEEEeecCCCccEEEEEcC--Cc-EEEEEeccCceeeeEeeee--cCCCccceEEEEEEEcCCC
Q 019117 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGG--NR-VTVYQCLEGGVIAALQSYV--DEDKEESFYTVSWACNVDG 97 (346)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~--~~-v~i~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~ 97 (346)
++.+..+. ..+..|+++| +|+++++... ++ +.||.+.++ .+..+.... ...+-..+..+++. ++|
T Consensus 9 ~~~v~~~~---~~p~~va~~~----~g~~~v~~~~~~~~~~~l~~~~~g-~~~~~p~~~~~~~~~~~~p~gv~~d--~~g 78 (343)
T 2qe8_A 9 LEVVAELS---LAPGNITLTP----DGRLFLSLHQFYQPEMQVAELTQD-GLIPFPPQSGNAIITFDTVLGIKSD--GNG 78 (343)
T ss_dssp CEEEEEES---SCEEEEEECT----TSCEEEEECGGGCCSCSEEEEETT-EEEESCCCCSSCCCCCSCEEEEEEC--SSS
T ss_pred eEEEEEcC---CCcceEEECC----CCCEEEEeCCCCCCceEEEEECCC-CeecCCCcccCcccceeEeeEEEEc--CCC
Confidence 44444443 6789999998 7889988642 22 566666533 232222111 11123455555554 888
Q ss_pred CcEEEEeec-----CCeEEEEEccCcceeeeecc------CCCceEEEEEeCCCCceEEEee---CCCCEEEEecCCCee
Q 019117 98 IPFLVAGGI-----NGIIRVIDVSNEKLHKSFVG------HGDSINEIRTQPLKPSLVVSAS---KDESVRLWNVQTGIC 163 (346)
Q Consensus 98 ~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~ 163 (346)
+ ++++-.. ++.|.+||+.+++.+..+.. +...+..+++++.++..+++.. .++.|.+||+.+++.
T Consensus 79 ~-L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~ 157 (343)
T 2qe8_A 79 I-VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA 157 (343)
T ss_dssp E-EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred c-EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence 7 5555433 57899999999887666542 2245689999983455556655 678999999998887
Q ss_pred EEEecccCCCCcceE-EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccc
Q 019117 164 ILIFAGAGGHRNEVL-SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 242 (346)
Q Consensus 164 ~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (346)
...+. +|..... ...+.+ ++..+.+.+.++.++.|.. .
T Consensus 158 ~r~~~---~~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~~~-------------------------------------~ 196 (343)
T 2qe8_A 158 ARVLQ---GYPGIAPEDIDLVI-DGVPVQIGQPDGTVIRPHL-------------------------------------G 196 (343)
T ss_dssp EEECT---TCTTTSCCSCCCEE-TTEECBEECTTSCEECCCC-------------------------------------C
T ss_pred EEEec---CCCcccccccceeE-CCEEEEeccCCCceeceec-------------------------------------c
Confidence 66664 3322110 133444 5566666667777655421 2
Q ss_pred eEEEEec--CCEEEEEeecC-eEEEEcCCCCCCCCCCccccccccc--cCCCcCeeEEEEeecCCcceEEEEcCCCcEEE
Q 019117 243 VDCNRWL--GDFILSKSVDN-EIVLWEPKMKEQSPGEGTADILQKY--PVPECDIWFIKFSCDFHYNAAAIGNREGKIFV 317 (346)
Q Consensus 243 i~~~~~~--~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~i 317 (346)
+..++++ ++.|+.+..++ .+..++........ .........+ .++.+....+++++++ .++++...++.|.+
T Consensus 197 ~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~g~~g~pdgia~d~~G--~l~va~~~~~~V~~ 273 (343)
T 2qe8_A 197 VNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQ-LTDAELGSKIERYSEKPICDGISIDKDH--NIYVGDLAHSAIGV 273 (343)
T ss_dssp EEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTT-CCHHHHHTTCEEEEECCSCSCEEECTTC--CEEEEEGGGTEEEE
T ss_pred cceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCC-CChhhhhcceEecccCCCCceEEECCCC--CEEEEccCCCeEEE
Confidence 3456666 66777776655 44444432111000 0000011111 1223356678999998 78888888999999
Q ss_pred EEcCCCCcceeeeee--eeEEEEEecCCCC
Q 019117 318 WELQSSPPVLIARLI--CFSLHVKYNPQSV 345 (346)
Q Consensus 318 wd~~~~~~~~~~~~~--~~~~~~~~spdg~ 345 (346)
||.++++........ ..+..++|.|+|+
T Consensus 274 ~d~~~G~~~~~~~~~~~~~p~~va~~~~g~ 303 (343)
T 2qe8_A 274 ITSADRAYKLLVTDEKLSWTDSFNFGSDGY 303 (343)
T ss_dssp EETTTTEEEEEEECGGGSCEEEEEECTTSC
T ss_pred EECCCCCEEEEEECCceecCCeeEECCCCc
Confidence 998666543333322 2478899999886
No 212
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.48 E-value=1.1e-11 Score=103.72 Aligned_cols=248 Identities=7% Similarity=-0.048 Sum_probs=154.2
Q ss_pred cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee----------cCCeEEEEEccCcceeeeeccC-
Q 019117 59 RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG----------INGIIRVIDVSNEKLHKSFVGH- 127 (346)
Q Consensus 59 ~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~- 127 (346)
.|.++|..+.+.+..+..- ..+ .+.+ +|||+ +|+++. .++.|.++|..+.+.+..+.-.
T Consensus 100 ~VsVID~~t~~vv~~I~vG-----~~P--gia~--SpDgk-~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g 169 (426)
T 3c75_H 100 QQFVIDGSTGRILGMTDGG-----FLP--HPVA--AEDGS-FFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPD 169 (426)
T ss_dssp EEEEEETTTTEEEEEEEEC-----SSC--EEEE--CTTSS-CEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT
T ss_pred eEEEEECCCCEEEEEEECC-----CCC--ceEE--CCCCC-EEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCC
Confidence 4999999999988887742 122 3554 59999 666654 4678999999999988877532
Q ss_pred ------CCceEEEEEeCCCCceEEEeeC--CCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeE
Q 019117 128 ------GDSINEIRTQPLKPSLVVSASK--DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTV 199 (346)
Q Consensus 128 ------~~~v~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 199 (346)
......+.|+| ++++++++.. ++.|.+.|+.+++.+..+.. .+. ....|.+...+++.+.||.+
T Consensus 170 ~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v----~g~---~~~~p~g~~~~v~~~~dG~~ 241 (426)
T 3c75_H 170 APRFLVGTYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV----PDC---YHIFPASPTVFYMNCRDGSL 241 (426)
T ss_dssp CCCCCBSCCGGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEEC----CSE---EEEEEEETTEEEEEETTSSE
T ss_pred ccccccCCCcceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeEEEEEEc----CCc---eeeccCCCcEEEEEcCCCCE
Confidence 23456889999 7888887764 57899999999999988873 221 22334344666777778888
Q ss_pred EEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce-EEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCC
Q 019117 200 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV-DCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE 276 (346)
Q Consensus 200 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~ 276 (346)
.+.++...+...... .. +......+ ..+.+. ++.++..+..+.|.+.|..........
T Consensus 242 ~~V~~~~~~v~~~~~-------~~------------~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~ 302 (426)
T 3c75_H 242 ARVDFADGETKVTNT-------EV------------FHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRA 302 (426)
T ss_dssp EEEECCTTCCEEEEC-------CC------------CSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECC
T ss_pred EEEECCCCcEEEEee-------ee------------eccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEee
Confidence 888874322110000 00 00000000 011222 555556667788999998654311000
Q ss_pred cccccc----ccccCCCcCeeEEEEeecCCcceEEEEc---------CCCcEEEEEcCCCCcceeeeeeeeEEEEEecCC
Q 019117 277 GTADIL----QKYPVPECDIWFIKFSCDFHYNAAAIGN---------REGKIFVWELQSSPPVLIARLICFSLHVKYNPQ 343 (346)
Q Consensus 277 ~~~~~~----~~~~~~~~~v~~~~~s~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spd 343 (346)
. .... ............++++++++ +++++.. .++.|.++|+.+.+.+..+.....+..+.|+||
T Consensus 303 ~-~~~~~~~~i~~g~~p~g~~~va~s~dg~-rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spD 380 (426)
T 3c75_H 303 P-IEALTEAERADDWRPGGWQQTAYHRQSD-RIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQD 380 (426)
T ss_dssp C-EESSCTTTGGGTEEECSSSCEEEEGGGT-EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCS
T ss_pred e-eeeccccccccccccCCceeeEEcCCCC-EEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccC
Confidence 0 0000 00000111223468999985 2333322 245799999999998888888888999999999
Q ss_pred CC
Q 019117 344 SV 345 (346)
Q Consensus 344 g~ 345 (346)
|+
T Consensus 381 g~ 382 (426)
T 3c75_H 381 AE 382 (426)
T ss_dssp SS
T ss_pred CC
Confidence 97
No 213
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.47 E-value=3.8e-11 Score=97.79 Aligned_cols=222 Identities=12% Similarity=0.066 Sum_probs=139.9
Q ss_pred eEEEEEEEcCCCCcEEEE-------eecCCeEEEEEccCcceeeeec----cCCCceEEEEEeCCC-CceEEEeeCCCCE
Q 019117 86 FYTVSWACNVDGIPFLVA-------GGINGIIRVIDVSNEKLHKSFV----GHGDSINEIRTQPLK-PSLVVSASKDESV 153 (346)
Q Consensus 86 v~~~~~~~~~~~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~-~~~l~s~~~d~~i 153 (346)
...++|. ++|. ++++ +..++.|.+||..+++...... ++...+..+++++ + +.++++.. .+.|
T Consensus 20 ~~~~~~~--~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v~~~-~~~l 94 (314)
T 1pjx_A 20 AEGPVFD--KNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADM-RLGL 94 (314)
T ss_dssp CEEEEEC--TTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEET-TTEE
T ss_pred ccCceEC--CCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEEEEC-CCCE
Confidence 3446665 8887 7777 6778999999988777543221 2446789999999 6 65555544 4479
Q ss_pred EEEecCCCeeEEE-ecccC-CCCcceEEEEecCCCCcEEEEEecC---------------CeEEEEEccccceeeeecee
Q 019117 154 RLWNVQTGICILI-FAGAG-GHRNEVLSVDFHPSDIYRIASCGMD---------------NTVKIWSMKEFWTYVEKSFT 216 (346)
Q Consensus 154 ~iwd~~~~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d---------------~~i~iwd~~~~~~~~~~~~~ 216 (346)
.+||.. ++.... ..... .....+.++++++ ++.++++...+ +.|..||... .
T Consensus 95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~-------- 163 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-Q-------- 163 (314)
T ss_dssp EEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-C--------
T ss_pred EEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCCC-C--------
Confidence 999988 665433 22111 1234588999998 77877776554 4566665432 1
Q ss_pred ecCCCCCCCCccceeceEEEeecccceEEEEec------CCEEEEE-eecCeEEEEcCC-CCCCCCCCccccccccccCC
Q 019117 217 WTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL------GDFILSK-SVDNEIVLWEPK-MKEQSPGEGTADILQKYPVP 288 (346)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~l~~~-~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~ 288 (346)
......+......+.++ ++.++.+ ..++.|.+||+. +++.. .......+..+
T Consensus 164 ----------------~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~----~~~~~~~~~~~ 223 (314)
T 1pjx_A 164 ----------------MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE----NKKVWGHIPGT 223 (314)
T ss_dssp ----------------EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE----EEEEEEECCCC
T ss_pred ----------------EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccc----cceEEEECCCC
Confidence 11111222334556665 3345444 567899999976 22200 00122223333
Q ss_pred C-cCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee-eeEEEEEecCCCC
Q 019117 289 E-CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI-CFSLHVKYNPQSV 345 (346)
Q Consensus 289 ~-~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~spdg~ 345 (346)
. ..+..+++++++ .++++...++.|.+||..+++........ ..+.+++|+|||+
T Consensus 224 ~~~~p~~i~~d~~G--~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~ 280 (314)
T 1pjx_A 224 HEGGADGMDFDEDN--NLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTK 280 (314)
T ss_dssp SSCEEEEEEEBTTC--CEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSS
T ss_pred CCCCCCceEECCCC--CEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCC
Confidence 3 457889999998 67777767889999999877765555544 4578899999986
No 214
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.45 E-value=5.1e-11 Score=107.72 Aligned_cols=245 Identities=9% Similarity=0.021 Sum_probs=146.9
Q ss_pred ccCCCceEEEEEEeecCCCccEEEEEc----CC-c-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEE
Q 019117 30 QEGKRPLYAVVFNFIDSRYFNVFATVG----GN-R-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (346)
Q Consensus 30 ~~h~~~v~~~~~~p~~~~~~~~la~~~----~~-~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 103 (346)
.+|...+..++||| +|++||.+. .+ . |++||+.+++.+..... ......++| + ||+ .|+.
T Consensus 125 ~~~~~~l~~~~~Sp----Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~------~~k~~~~~W--s-Dg~-~l~y 190 (693)
T 3iuj_A 125 PDGTTALDQLSFSR----DGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK------DVKFSGISW--L-GNE-GFFY 190 (693)
T ss_dssp TTSCCEEEEEEECT----TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE------EEESCCCEE--E-TTT-EEEE
T ss_pred CCCcEEEEEEEECC----CCCEEEEEEecCCCceEEEEEEECCCCCCCccccC------CceeccEEE--e-CCC-EEEE
Confidence 34666788999999 788888532 22 3 99999998876443110 101122445 4 677 6776
Q ss_pred eecCC-------------eEEEEEccCcce----eeeecc-CCCceEEEEEeCCCCceEE-EeeC---CCCEEEEecCCC
Q 019117 104 GGING-------------IIRVIDVSNEKL----HKSFVG-HGDSINEIRTQPLKPSLVV-SASK---DESVRLWNVQTG 161 (346)
Q Consensus 104 ~~~dg-------------~i~iwd~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~~l~-s~~~---d~~i~iwd~~~~ 161 (346)
++.+. .|.+|++.++.. +..... |...+..+.|+| ++++|+ +.+. +..|.++|+.++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~ 269 (693)
T 3iuj_A 191 SSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQE 269 (693)
T ss_dssp EESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTST
T ss_pred EEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCC
Confidence 66653 499999877642 223333 445678899999 666654 3332 358999999776
Q ss_pred e-eEEEecccCCCCcceEEEEecCCCCcEEEEEecC---CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe
Q 019117 162 I-CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD---NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 237 (346)
Q Consensus 162 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (346)
. ....+. .+....... ++++++.+++....+ +.|..+|+..... .....+.
T Consensus 270 ~~~~~~l~---~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~---------------------~~~~~l~ 324 (693)
T 3iuj_A 270 NAPLLTVQ---GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP---------------------AHWRDLI 324 (693)
T ss_dssp TCCCEEEE---CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG---------------------GGCEEEE
T ss_pred CCceEEEe---CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc---------------------cccEEEe
Confidence 3 344444 355555554 444366666666554 5788899876321 0122334
Q ss_pred ecccceEEEEecCCEEEEEeecC---eEEEEcCCCCCCCCCCccccccccccC-CCcCeeEEEEeecCCcceEEEEcCC-
Q 019117 238 VHSNYVDCNRWLGDFILSKSVDN---EIVLWEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNRE- 312 (346)
Q Consensus 238 ~~~~~i~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~l~~~~~d- 312 (346)
.|...+..+...++.|+....++ .|++|++.... ...+.. ..+.+..+.+++++. .|+....+
T Consensus 325 ~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~----------~~~l~~p~~~~~~~~~~~~d~~--~l~~~~ss~ 392 (693)
T 3iuj_A 325 PERQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGKR----------VREVALPGLGSVSGFNGKHDDP--ALYFGFENY 392 (693)
T ss_dssp CCCSSCEEEEEETTEEEEEEEETTEEEEEEECTTSCE----------EEEECCSSSSEEEECCCCTTCS--CEEEEEECS
T ss_pred cCCCCEEEEEEECCEEEEEEEECCeeEEEEEECCCCe----------eEEeecCCCceEEeeecCCCCC--EEEEEecCC
Confidence 44444434444477777666544 68999987543 222222 234566777788874 33333322
Q ss_pred ---CcEEEEEcCCCCcc
Q 019117 313 ---GKIFVWELQSSPPV 326 (346)
Q Consensus 313 ---g~i~iwd~~~~~~~ 326 (346)
+.|+.||+.+++..
T Consensus 393 ~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 393 AQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp SSCCEEEEECTTTCCEE
T ss_pred CCCCEEEEEECCCCeEE
Confidence 78999999887643
No 215
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.44 E-value=6.1e-10 Score=89.91 Aligned_cols=236 Identities=10% Similarity=-0.003 Sum_probs=150.3
Q ss_pred CCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeE
Q 019117 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII 110 (346)
Q Consensus 32 h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 110 (346)
+...+.++++.+ ++.++++...++ |..||.. ++. ..+. .......+..+++. ++|. ++++...++.|
T Consensus 60 ~~~~~~~i~~~~----~g~l~v~~~~~~~v~~~d~~-g~~-~~~~---~~~~~~~~~~i~~~--~~g~-l~v~~~~~~~i 127 (300)
T 2qc5_A 60 PDAKVMCLIVSS----LGDIWFTENGANKIGKLSKK-GGF-TEYP---LPQPDSGPYGITEG--LNGD-IWFTQLNGDRI 127 (300)
T ss_dssp TTCCEEEEEECT----TSCEEEEETTTTEEEEECTT-SCE-EEEE---CSSTTCCEEEEEEC--STTC-EEEEETTTTEE
T ss_pred CCCcceeEEECC----CCCEEEEecCCCeEEEECCC-CCe-EEec---CCCCCCCCccceEC--CCCC-EEEEccCCCeE
Confidence 346788999887 678887776555 9999866 443 2222 11123455556554 8887 77777668899
Q ss_pred EEEEccCcceee-eeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcE
Q 019117 111 RVIDVSNEKLHK-SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR 189 (346)
Q Consensus 111 ~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 189 (346)
..+|.. ++... .+......+..+++.+ +++++++...++.|..+|. +++... +.. ......+.++++++ ++.+
T Consensus 128 ~~~~~~-g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~-~~~~~~~~~i~~d~-~g~l 201 (300)
T 2qc5_A 128 GKLTAD-GTIYEYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRITN-TGKLEE-YPL-PTNAAAPVGITSGN-DGAL 201 (300)
T ss_dssp EEECTT-SCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEE-EEC-SSTTCCEEEEEECT-TSSE
T ss_pred EEECCC-CCEEEccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEECC-CCcEEE-eeC-CCCCCCcceEEECC-CCCE
Confidence 999987 55442 2333456789999999 7777766666788999998 555443 321 12445789999998 7787
Q ss_pred EEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcC
Q 019117 190 IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEP 267 (346)
Q Consensus 190 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~ 267 (346)
+++....+.|.+||... .. .......+...+.++.++ +++.++...++.|..||.
T Consensus 202 ~v~~~~~~~i~~~~~~g-~~----------------------~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 202 WFVEIMGNKIGRITTTG-EI----------------------SEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp EEEETTTTEEEEECTTC-CE----------------------EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred EEEccCCCEEEEEcCCC-cE----------------------EEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 77766677899998832 10 011111234456778877 665555556789999998
Q ss_pred CCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117 268 KMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (346)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~ 321 (346)
. ++. ...........+.++++.+++ .+.++.. . .|..+|.+
T Consensus 259 ~-g~~--------~~~~~~~~~~~~~~i~~~~~g--~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 259 D-NTI--------QEYQLQTENAEPHGITFGKDG--SVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp T-SCE--------EEEECCSTTCCCCCEEECTTS--CEEEECS-S-EEEEEEEC
T ss_pred C-CcE--------EEEECCccCCccceeEeCCCC--CEEEEcc-C-ceEEeCCC
Confidence 3 321 111122233467888999888 4444444 4 67766653
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.44 E-value=4.6e-11 Score=100.76 Aligned_cols=232 Identities=10% Similarity=0.041 Sum_probs=141.0
Q ss_pred ceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCC--CEEEEecCCCe
Q 019117 85 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE--SVRLWNVQTGI 162 (346)
Q Consensus 85 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~ 162 (346)
....+++. ++++ ++++...++.|++||..+++....... ..... ++|+| +++.|+++..++ .|.+++...+.
T Consensus 132 ~P~~la~d--~~g~-lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 132 YMWGIAAV--GNNT-VLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CEEEEEEC--STTE-EEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CceEEEEe--CCCC-EEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCc
Confidence 34445554 8888 777777789999999988776555443 23334 99999 777888777765 78888887655
Q ss_pred eEEEecccC-CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc
Q 019117 163 CILIFAGAG-GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241 (346)
Q Consensus 163 ~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (346)
....+.... .....+.+++++|.++. |+.+..++.|..||............. ...+..
T Consensus 206 ~~~~~g~~~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~~~~~~~~~~-------------------~~g~~~ 265 (409)
T 3hrp_A 206 APTRIGQLGSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQEVTLIKQLE-------------------LSGSLG 265 (409)
T ss_dssp CEEEEEECCTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETTTCCEEEEEECC-------------------CCSCCC
T ss_pred eeEEeeeccchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECCCCCEEEEeccc-------------------ccCCCC
Confidence 443431110 14567789999984455 444677889999998763211110000 000111
Q ss_pred ce--EEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCccc---ccc--ccccCCCcCeeEEEEeecCCcceEEEEc-
Q 019117 242 YV--DCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTA---DIL--QKYPVPECDIWFIKFSCDFHYNAAAIGN- 310 (346)
Q Consensus 242 ~i--~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~--~~~~~~~~~v~~~~~s~~~~~~~l~~~~- 310 (346)
.- ..++|+ +.++++-...+.|+.|+...... ...... ... ......-.....+++++++ .++++-+
T Consensus 266 ~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~-~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG--~lyvad~~ 342 (409)
T 3hrp_A 266 TNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECE-WFCGSATQKTVQDGLREEALFAQPNGMTVDEDG--NFYIVDGF 342 (409)
T ss_dssp CSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE-EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC--CEEEEETT
T ss_pred CCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE-EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC--CEEEEeCC
Confidence 11 266676 34555556688999998764310 000000 000 0000112357889999998 6777777
Q ss_pred CCCcEEEEEcCCCCcceeeee---------------eeeEEEEEecCCCC
Q 019117 311 REGKIFVWELQSSPPVLIARL---------------ICFSLHVKYNPQSV 345 (346)
Q Consensus 311 ~dg~i~iwd~~~~~~~~~~~~---------------~~~~~~~~~spdg~ 345 (346)
.++.|+.|++.++........ -..+..++++|+|.
T Consensus 343 ~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~ 392 (409)
T 3hrp_A 343 KGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG 392 (409)
T ss_dssp TTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE
T ss_pred CCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC
Confidence 899999999877764333322 12478899999875
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.42 E-value=1.4e-09 Score=88.95 Aligned_cols=226 Identities=14% Similarity=-0.012 Sum_probs=134.4
Q ss_pred ceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEE
Q 019117 35 PLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVI 113 (346)
Q Consensus 35 ~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw 113 (346)
-..+..|+|. .+.++++...++ |..|+..++.. ..+. ....+.++++. ++|+ ++++. .+ .|.+|
T Consensus 50 ~~egp~~~~~---~~~l~~~d~~~~~i~~~d~~~~~~-~~~~------~~~~v~~i~~~--~dg~-l~v~~-~~-gl~~~ 114 (326)
T 2ghs_A 50 LGEGPTFDPA---SGTAWWFNILERELHELHLASGRK-TVHA------LPFMGSALAKI--SDSK-QLIAS-DD-GLFLR 114 (326)
T ss_dssp BEEEEEEETT---TTEEEEEEGGGTEEEEEETTTTEE-EEEE------CSSCEEEEEEE--ETTE-EEEEE-TT-EEEEE
T ss_pred CCcCCeEeCC---CCEEEEEECCCCEEEEEECCCCcE-EEEE------CCCcceEEEEe--CCCe-EEEEE-CC-CEEEE
Confidence 3567889982 246666665555 99999776543 2222 23456667665 8887 65544 34 59999
Q ss_pred EccCcceeeeecc----CCCceEEEEEeCCCCceEEEeeC------CCCEEEEecCCCeeEEEecccCCCCcceEEEEec
Q 019117 114 DVSNEKLHKSFVG----HGDSINEIRTQPLKPSLVVSASK------DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 183 (346)
Q Consensus 114 d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 183 (346)
|..+++....... ....+.+++++| ++.++++... .+.|..++ +++...... .......++|+
T Consensus 115 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~----~~~~~~~i~~s 187 (326)
T 2ghs_A 115 DTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA----DISIPNSICFS 187 (326)
T ss_dssp ETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE----EESSEEEEEEC
T ss_pred ECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC----CCcccCCeEEc
Confidence 9888775432221 124688999999 7776665432 24455555 455433222 33457799999
Q ss_pred CCCCcEE-EEEecCCeEEEEEcc--cc-ceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEe
Q 019117 184 PSDIYRI-ASCGMDNTVKIWSMK--EF-WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS 257 (346)
Q Consensus 184 ~~~~~~l-~s~~~d~~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~ 257 (346)
| +++.+ ++.+.++.|.+||+. +. .... ......+.........+.++ |++.++..
T Consensus 188 ~-dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~------------------~~~~~~~~~~~~~p~gi~~d~~G~lwva~~ 248 (326)
T 2ghs_A 188 P-DGTTGYFVDTKVNRLMRVPLDARTGLPTGK------------------AEVFIDSTGIKGGMDGSVCDAEGHIWNARW 248 (326)
T ss_dssp T-TSCEEEEEETTTCEEEEEEBCTTTCCBSSC------------------CEEEEECTTSSSEEEEEEECTTSCEEEEEE
T ss_pred C-CCCEEEEEECCCCEEEEEEcccccCCcccC------------------ceEEEECCCCCCCCCeeEECCCCCEEEEEe
Confidence 9 66644 555567899999986 31 1000 00011111122345567776 66666555
Q ss_pred ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEe-ecCCcceEEEEcCC
Q 019117 258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS-CDFHYNAAAIGNRE 312 (346)
Q Consensus 258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~~~l~~~~~d 312 (346)
.++.|.+||.. ++ .+..+..+...+.+++|+ +++. .++++...+
T Consensus 249 ~~~~v~~~d~~-g~---------~~~~i~~~~~~~~~~af~g~d~~-~L~vt~~~~ 293 (326)
T 2ghs_A 249 GEGAVDRYDTD-GN---------HIARYEVPGKQTTCPAFIGPDAS-RLLVTSARE 293 (326)
T ss_dssp TTTEEEEECTT-CC---------EEEEEECSCSBEEEEEEESTTSC-EEEEEEBCT
T ss_pred CCCEEEEECCC-CC---------EEEEEECCCCCcEEEEEecCCCC-EEEEEecCC
Confidence 56889999984 43 344555556679999998 8874 233444433
No 218
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.39 E-value=2.6e-13 Score=113.00 Aligned_cols=204 Identities=8% Similarity=-0.013 Sum_probs=116.7
Q ss_pred CCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC-
Q 019117 96 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR- 174 (346)
Q Consensus 96 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~- 174 (346)
++. .+++++.||.|..||..+++.+..+.. +.+.+..+.. ++..+++++.|+.|+.||..+++.+..+. .+.
T Consensus 8 ~~~-~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~---~~~~ 80 (369)
T 2hz6_A 8 PET-LLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLP---FTIP 80 (369)
T ss_dssp CTT-EEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECS---CCHH
T ss_pred eCC-EEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeee---ccCc
Confidence 355 899999999999999999999988875 4555555555 66688888899999999999998877665 121
Q ss_pred cceE-EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEE
Q 019117 175 NEVL-SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFI 253 (346)
Q Consensus 175 ~~v~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 253 (346)
..+. +..+. .+..+++++.++.|..||..+++.. ..+..+.. +. ....++.+
T Consensus 81 ~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~-----------------------w~~~~~~~-~~-~~p~~~~v 133 (369)
T 2hz6_A 81 ELVQASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQ-----------------------QTLSSAFA-DS-LSPSTSLL 133 (369)
T ss_dssp HHHTTCSCC-------CCCCEEEEEEEEECCC-----------------------------------------------E
T ss_pred cccccCceEe--cCCEEEEEeCCCEEEEEECCCCcEE-----------------------EEecCCCc-cc-ccccCCEE
Confidence 1111 11111 3346778888999999999984431 11111110 00 01137788
Q ss_pred EEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecC-CcceEEEEcCCCcEEEEEcCCCCcceeeeee
Q 019117 254 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF-HYNAAAIGNREGKIFVWELQSSPPVLIARLI 332 (346)
Q Consensus 254 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 332 (346)
++++.|+.|+.||..+++... .+.... .....++.+. ....+++++.||.|+.||..+++.+-...+.
T Consensus 134 ~~~~~dg~v~a~d~~tG~~~W---------~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~ 202 (369)
T 2hz6_A 134 YLGRTEYTITMYDTKTRELRW---------NATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA 202 (369)
T ss_dssp EEEEEEEEEECCCSSSSSCCC---------EEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS
T ss_pred EEEecCCEEEEEECCCCCEEE---------eEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC
Confidence 899999999999999887322 221110 1112233321 0025677888999999999999877666665
Q ss_pred eeEE-EEEecCCC
Q 019117 333 CFSL-HVKYNPQS 344 (346)
Q Consensus 333 ~~~~-~~~~spdg 344 (346)
..+. ...+++||
T Consensus 203 ~pv~~~~~~~~dg 215 (369)
T 2hz6_A 203 SPVVAFYVWQREG 215 (369)
T ss_dssp SCEEEEEECTTSS
T ss_pred CceEEEEEecCCc
Confidence 5543 35566665
No 219
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.39 E-value=1.6e-09 Score=88.69 Aligned_cols=216 Identities=7% Similarity=-0.075 Sum_probs=134.2
Q ss_pred EEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEec
Q 019117 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA 168 (346)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 168 (346)
..|. +++..++++...++.|..||..+++.. .+. ....+.++++++ ++.++++. .+ .|.+||..+++......
T Consensus 54 p~~~--~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~-dg~l~v~~-~~-gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 54 PTFD--PASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIAS-DD-GLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEE--TTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEEE-TT-EEEEEETTTCCEEEEEC
T ss_pred CeEe--CCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeC-CCeEEEEE-CC-CEEEEECCCCcEEEEee
Confidence 5565 765537777777899999999877643 232 346799999999 77766654 44 49999998877543322
Q ss_pred ccC-CCCcceEEEEecCCCCcEEEEEec------CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc
Q 019117 169 GAG-GHRNEVLSVDFHPSDIYRIASCGM------DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241 (346)
Q Consensus 169 ~~~-~~~~~v~~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (346)
... .....+..++++| +++++++... .+.|..++ ..+ ...+..+..
T Consensus 127 ~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~------------------------~~~~~~~~~ 179 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGK------------------------VTKLFADIS 179 (326)
T ss_dssp SSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTE------------------------EEEEEEEES
T ss_pred CCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCc------------------------EEEeeCCCc
Confidence 111 1134688999999 7776665432 23455554 211 111112223
Q ss_pred ceEEEEec--CCEEEEE-eecCeEEEEcCC--CC-CCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcE
Q 019117 242 YVDCNRWL--GDFILSK-SVDNEIVLWEPK--MK-EQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI 315 (346)
Q Consensus 242 ~i~~~~~~--~~~l~~~-~~d~~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i 315 (346)
....++|+ ++.++.+ +.++.|.+|++. ++ +... ......+......+..+++.+++ .+.++...++.|
T Consensus 180 ~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~----~~~~~~~~~~~~~p~gi~~d~~G--~lwva~~~~~~v 253 (326)
T 2ghs_A 180 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK----AEVFIDSTGIKGGMDGSVCDAEG--HIWNARWGEGAV 253 (326)
T ss_dssp SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC----CEEEEECTTSSSEEEEEEECTTS--CEEEEEETTTEE
T ss_pred ccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccC----ceEEEECCCCCCCCCeeEECCCC--CEEEEEeCCCEE
Confidence 45678887 6655444 557899999986 44 2110 01122222233456788899888 566665566889
Q ss_pred EEEEcCCCCcceeeeeee-eEEEEEec-CCCC
Q 019117 316 FVWELQSSPPVLIARLIC-FSLHVKYN-PQSV 345 (346)
Q Consensus 316 ~iwd~~~~~~~~~~~~~~-~~~~~~~s-pdg~ 345 (346)
.+||. +++.+..+.... .+.+++|+ ||++
T Consensus 254 ~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~ 284 (326)
T 2ghs_A 254 DRYDT-DGNHIARYEVPGKQTTCPAFIGPDAS 284 (326)
T ss_dssp EEECT-TCCEEEEEECSCSBEEEEEEESTTSC
T ss_pred EEECC-CCCEEEEEECCCCCcEEEEEecCCCC
Confidence 99998 566555555444 47899998 8875
No 220
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.37 E-value=5.1e-10 Score=92.83 Aligned_cols=225 Identities=12% Similarity=0.074 Sum_probs=137.2
Q ss_pred CCCCcEEEEeecCCeEEEEEccCc----ceeeeec-------cCCCceEEEEEeCCCCceEEEeeCC------CCEEEEe
Q 019117 95 VDGIPFLVAGGINGIIRVIDVSNE----KLHKSFV-------GHGDSINEIRTQPLKPSLVVSASKD------ESVRLWN 157 (346)
Q Consensus 95 ~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd 157 (346)
++++.+++.+..++.|.++|+.+. +.++++. .....-..+...| ++ +++++..+ +.|.+.|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEE
Confidence 667756777788899999998755 5555552 1112456778889 66 76666555 7899999
Q ss_pred cCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe-------------------cCCeEEEEEccccceeeeeceeec
Q 019117 158 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-------------------MDNTVKIWSMKEFWTYVEKSFTWT 218 (346)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-------------------~d~~i~iwd~~~~~~~~~~~~~~~ 218 (346)
..+.+.+..+....+....-+.+.|+| +++.+++.. .+.+|.+||+.+.+
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k---------- 239 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK---------- 239 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE----------
T ss_pred CCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc----------
Confidence 999999998874322223345688899 888888874 36899999998732
Q ss_pred CCCCCCCCccceeceEEEeec--ccceEEEEe--c--CCEEEEEe------ecCeEEEEcCCCCCCCCCC----ccccc-
Q 019117 219 DLPSKFPTKYVQFPVFIASVH--SNYVDCNRW--L--GDFILSKS------VDNEIVLWEPKMKEQSPGE----GTADI- 281 (346)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~--~--~~~l~~~~------~d~~i~iwd~~~~~~~~~~----~~~~~- 281 (346)
.+.++..- ......+.| + ++++.+++ .+++|.+|..+.++..... .....
T Consensus 240 -------------~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~ 306 (462)
T 2ece_A 240 -------------RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLE 306 (462)
T ss_dssp -------------EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECC
T ss_pred -------------EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccc
Confidence 12222211 112233434 4 66666665 4567877665432110000 00000
Q ss_pred --c----ccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC-CCccee--eeeee---------------eEEE
Q 019117 282 --L----QKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS-SPPVLI--ARLIC---------------FSLH 337 (346)
Q Consensus 282 --~----~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~--~~~~~---------------~~~~ 337 (346)
+ ..+.+-......+.+|+|++ .+.++.-..+.|.+||+.. +++... ....+ .+..
T Consensus 307 ~~lp~~~~~f~~~~~~pa~I~lS~DGr-fLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~ 385 (462)
T 2ece_A 307 GNLPEILKPFKAVPPLVTDIDISLDDK-FLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQM 385 (462)
T ss_dssp SSCCGGGGGGTEECCCCCCEEECTTSC-EEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCC
T ss_pred ccccccccccccCCCceeEEEECCCCC-EEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCE
Confidence 0 00111123577899999995 3445556688999999864 333332 22321 3678
Q ss_pred EEecCCCCC
Q 019117 338 VKYNPQSVY 346 (346)
Q Consensus 338 ~~~spdg~~ 346 (346)
+++||||++
T Consensus 386 ~~lSpDGk~ 394 (462)
T 2ece_A 386 LEISRDGRR 394 (462)
T ss_dssp EEECTTSSE
T ss_pred EEEcCCCCE
Confidence 999999974
No 221
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.37 E-value=1.4e-09 Score=88.10 Aligned_cols=234 Identities=12% Similarity=0.029 Sum_probs=138.5
Q ss_pred ecccCCCceEEEEEEeecCCCcc-EEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117 28 KLQEGKRPLYAVVFNFIDSRYFN-VFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (346)
Q Consensus 28 ~~~~h~~~v~~~~~~p~~~~~~~-~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 105 (346)
.+..+........|+| +++ ++++...++ |..|+. +++ ...+.. ....+..+++. ++|+ ++++..
T Consensus 39 ~l~~~~~~~egp~~~~----~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~-----~~~~~~gl~~d--~dG~-l~v~~~ 104 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWE----AQRTLVWSDLVGRRVLGWRE-DGT-VDVLLD-----ATAFTNGNAVD--AQQR-LVHCEH 104 (305)
T ss_dssp EEECCCSSEEEEEEEG----GGTEEEEEETTTTEEEEEET-TSC-EEEEEE-----SCSCEEEEEEC--TTSC-EEEEET
T ss_pred EEecCCcCccCCeEeC----CCCEEEEEECCCCEEEEEeC-CCC-EEEEeC-----CCCccceeeEC--CCCC-EEEEEC
Confidence 3444556678899998 666 666666555 999986 444 333322 23345555554 8998 666666
Q ss_pred cCCeEEEEEccCcceeeeecc----CCCceEEEEEeCCCCceEEE----eeC-------------CCCEEEEecCCCeeE
Q 019117 106 INGIIRVIDVSNEKLHKSFVG----HGDSINEIRTQPLKPSLVVS----ASK-------------DESVRLWNVQTGICI 164 (346)
Q Consensus 106 ~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s----~~~-------------d~~i~iwd~~~~~~~ 164 (346)
.++.|.+|+.+ ++....... ....+.++++.| ++.++++ |.. .+.|..+|..+++..
T Consensus 105 ~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~ 182 (305)
T 3dr2_A 105 GRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ 182 (305)
T ss_dssp TTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE
T ss_pred CCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE
Confidence 66889999976 553222211 123467899999 7787776 332 245777777666543
Q ss_pred EEecccCCCCcceEEEEecCCCCcEEEEEecC------CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee
Q 019117 165 LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 238 (346)
Q Consensus 165 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (346)
... .......++|+| +++.|+.+... +.|.+|++.... .... ... ...
T Consensus 183 ~~~-----~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~~-----------------~~~-~~~ 236 (305)
T 3dr2_A 183 RMA-----DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVEITAFAWRDGA--LHDR-----------------RHF-ASV 236 (305)
T ss_dssp EEE-----EESSEEEEEECT-TSSEEEEEECCC---CCCEEEEEEEETTE--EEEE-----------------EEE-ECC
T ss_pred EEe-----cCCCCcceEEcC-CCCEEEEEecCCcCCCCCEEEEEEecCCC--ccCC-----------------eEE-EEC
Confidence 322 123567899999 77766666554 689999987522 0000 000 001
Q ss_pred cccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEE
Q 019117 239 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 316 (346)
Q Consensus 239 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~ 316 (346)
.......+.++ |+ |.++..+ .|.+|+... + .+..+..+. .+..++|++++ +.|..++.++ +.
T Consensus 237 ~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~~g-~---------~~~~~~~~~-~~~~~~f~~d~--~~L~it~~~~-l~ 300 (305)
T 3dr2_A 237 PDGLPDGFCVDRGGW-LWSSSGT-GVCVFDSDG-Q---------LLGHIPTPG-TASNCTFDQAQ--QRLFITGGPC-LW 300 (305)
T ss_dssp SSSCCCSEEECTTSC-EEECCSS-EEEEECTTS-C---------EEEEEECSS-CCCEEEECTTS--CEEEEEETTE-EE
T ss_pred CCCCCCeEEECCCCC-EEEecCC-cEEEECCCC-C---------EEEEEECCC-ceeEEEEeCCC--CEEEEEcCCe-EE
Confidence 12223345555 66 4455544 599999853 3 344444444 58889999887 4566655554 44
Q ss_pred EEE
Q 019117 317 VWE 319 (346)
Q Consensus 317 iwd 319 (346)
.++
T Consensus 301 ~~~ 303 (305)
T 3dr2_A 301 MLP 303 (305)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
No 222
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.36 E-value=6.7e-11 Score=97.43 Aligned_cols=279 Identities=9% Similarity=-0.089 Sum_probs=161.6
Q ss_pred cceeeeeecccCCCceEEEEEEeecCCCccEEEEEc-----------CCcEEEEEeccCceeeeEeeeecCC--CccceE
Q 019117 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVG-----------GNRVTVYQCLEGGVIAALQSYVDED--KEESFY 87 (346)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~-----------~~~v~i~~~~~~~~~~~~~~~~~~~--~~~~v~ 87 (346)
..++.+.++.....+ .++|+| +++.+.++. ++.|.+||..+++.+..+....... ......
T Consensus 54 ~t~~v~~~i~vG~~P--~i~~sp----Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~ 127 (368)
T 1mda_H 54 GCGVTLGHSLGAFLS--LAVAGH----SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVH 127 (368)
T ss_dssp TTTEEEEEEEECTTC--EEEECT----TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTT
T ss_pred CCCeEEEEEeCCCCC--ceEECC----CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcc
Confidence 345556666544456 799999 677777765 2339999999999888876320000 001122
Q ss_pred EEEEEEcCCCCcEEEEeec--CCeEEE--EEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC---
Q 019117 88 TVSWACNVDGIPFLVAGGI--NGIIRV--IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT--- 160 (346)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--- 160 (346)
.+.+ +|||+ +++++.. +..+.+ +|+.+ +..+... +. +.+.|.+...+++.+.|+.+.+.|+.+
T Consensus 128 ~ia~--SpDGk-~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~ 197 (368)
T 1mda_H 128 IIGN--CASSA-CLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp SEEE--CTTSS-CEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred eEEE--cCCCC-EEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence 2444 59999 7777754 467888 99877 4444321 11 223453555667778899999999886
Q ss_pred --CeeEEEe-cccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEe
Q 019117 161 --GICILIF-AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 237 (346)
Q Consensus 161 --~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (346)
++..... ....-...+. . .+.++.+++ .+. +.|.+.|+............... . .... ..
T Consensus 198 ~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~-vs~-~~V~viD~~~~~~~v~~~~~~~~-------~--~~~~--~~ 260 (368)
T 1mda_H 198 AAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVW-AVA-SSILQGDIPAAGATMKAAIDGNE-------S--GRKA--DN 260 (368)
T ss_dssp CCEECCCCSCTTSCBCSCCE---E-ETTTTEEEE-CBS-SCCEEEECCSSCCEEECCCCSSC-------T--HHHH--TT
T ss_pred cCCeEEEEeeeeeeCCCCcc---c-cccCCEEEE-EcC-CEEEEEECCCCcceEEEEEEecc-------c--cccc--cc
Confidence 4332110 0000012222 3 443444444 444 89999998652111110000000 0 0000 00
Q ss_pred ecccceEEEEec--CCEEEEEee---------cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceE
Q 019117 238 VHSNYVDCNRWL--GDFILSKSV---------DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAA 306 (346)
Q Consensus 238 ~~~~~i~~~~~~--~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l 306 (346)
..+.....+.++ ++.++++.. ++.+.++|+.+.+ .+..+.... ....++|+||++ .++
T Consensus 261 ~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~---------vv~~i~vg~-~p~gi~~s~Dg~-~l~ 329 (368)
T 1mda_H 261 FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ---------TSGPISNGH-DSDAIIAAQDGA-SDN 329 (368)
T ss_dssp EEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC---------EEECCEEEE-EECEEEECCSSS-CEE
T ss_pred cccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe---------EEEEEECCC-CcceEEECCCCC-EEE
Confidence 011111113344 666665432 2356699999887 555555443 588999999995 356
Q ss_pred EEEc-CCCcEEEEEcCCCCcceeeeeeeeEEEEEecCC
Q 019117 307 AIGN-REGKIFVWELQSSPPVLIARLICFSLHVKYNPQ 343 (346)
Q Consensus 307 ~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spd 343 (346)
++.. .++.|.++|+.+++.+..+.....+..+++.+.
T Consensus 330 va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i~~~~~ 367 (368)
T 1mda_H 330 YANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQNE 367 (368)
T ss_dssp EEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECCCC
T ss_pred EEccCCCCeEEEEECCCCcEEEEEECCCCCCEEEeecC
Confidence 6666 689999999999998888887777888887764
No 223
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.36 E-value=7.4e-09 Score=82.16 Aligned_cols=250 Identities=6% Similarity=-0.100 Sum_probs=145.6
Q ss_pred cEEEEEcCCcEEEEEeccCcee-----eeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeee
Q 019117 50 NVFATVGGNRVTVYQCLEGGVI-----AALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF 124 (346)
Q Consensus 50 ~~la~~~~~~v~i~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 124 (346)
.+|..+..+.|+.+++...... ..+.. .......+++. +++..++++-..++.|..+++........+
T Consensus 2 ~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~-----~~~~~~gi~~d--~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~ 74 (267)
T 1npe_A 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHI-----PAKVIIGLAFD--CVDKVVYWTDISEPSIGRASLHGGEPTTII 74 (267)
T ss_dssp EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEE-----EEEEEEEEEEE--TTTTEEEEEETTTTEEEEEESSSCCCEEEE
T ss_pred cEEEEEcCCeEEEEEecCcccccccceeeecC-----CCCcEEEEEEe--cCCCEEEEEECCCCEEEEEecCCCCcEEEE
Confidence 3455555556888887654321 11111 12234445555 766535556566789999998766543333
Q ss_pred ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEec--CCeEEEE
Q 019117 125 VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM--DNTVKIW 202 (346)
Q Consensus 125 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--d~~i~iw 202 (346)
.........+++.+.++.++++-...+.|.++++.... ...+.. ........++++|.++.++++... .+.|..+
T Consensus 75 ~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~~--~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~ 151 (267)
T 1npe_A 75 RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFD--TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETS 151 (267)
T ss_dssp CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC--SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEE
T ss_pred ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEEE--CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEE
Confidence 33335678999998445566666667899999986433 222221 122567899999844554454433 4678888
Q ss_pred EccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEE-EEEeecCeEEEEcCCCCCCCCCCccc
Q 019117 203 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTA 279 (346)
Q Consensus 203 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~ 279 (346)
++..... .............++++ ++.| ++-...+.|.++|+.....
T Consensus 152 ~~dg~~~-----------------------~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~------- 201 (267)
T 1npe_A 152 HMDGTNR-----------------------RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR------- 201 (267)
T ss_dssp ETTSCCC-----------------------EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE-------
T ss_pred ecCCCCc-----------------------EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce-------
Confidence 8764110 00000112345667776 4555 4445578999999875431
Q ss_pred cccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee--eEEEEEecCCCC
Q 019117 280 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC--FSLHVKYNPQSV 345 (346)
Q Consensus 280 ~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~spdg~ 345 (346)
...... ......++. ++. .++++....+.|..+|..+++.+....... .+..+++.|++.
T Consensus 202 --~~~~~~-~~~P~gi~~--d~~-~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 202 --RKVLEG-LQYPFAVTS--YGK-NLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp --EEEEEC-CCSEEEEEE--ETT-EEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred --EEEecC-CCCceEEEE--eCC-EEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 111111 123345554 342 466666677899999999887666655433 367899998864
No 224
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.35 E-value=3.9e-10 Score=101.41 Aligned_cols=277 Identities=10% Similarity=0.067 Sum_probs=155.5
Q ss_pred cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee------cCCeEEEEEccCcceee
Q 019117 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG------INGIIRVIDVSNEKLHK 122 (346)
Q Consensus 50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~ 122 (346)
..++.++.++ |..+|..+|+.+..............+...-.. .++. ++.+. .+|.|..||..+|+.+.
T Consensus 122 g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v--~~g~--v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 122 GKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRV--VNGK--VVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEE--ETTE--EEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred CEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEE--ECCE--EEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 4566666566 999999999987766542010000111100011 1444 44443 36899999999999887
Q ss_pred eeccCC-------------------------------CceEEEEEeCCCCceEEEeeCCCC-------------------
Q 019117 123 SFVGHG-------------------------------DSINEIRTQPLKPSLVVSASKDES------------------- 152 (346)
Q Consensus 123 ~~~~~~-------------------------------~~v~~~~~~~~~~~~l~s~~~d~~------------------- 152 (346)
.+.... ..-..+++.| +..+++.+..++.
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~ 276 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSS 276 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTE
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence 764210 0112577888 6778888877763
Q ss_pred EEEEecCCCeeEEEecccCCCC-------cceEEEEecCCCCc---EEEEEecCCeEEEEEccccceeeeeceeecCCCC
Q 019117 153 VRLWNVQTGICILIFAGAGGHR-------NEVLSVDFHPSDIY---RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPS 222 (346)
Q Consensus 153 i~iwd~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 222 (346)
|..+|.++|+.+..++... |. ..+....... ++. .++.++.+|.++++|.++++......+.......
T Consensus 277 v~AlD~~TG~~~W~~~~~~-~d~wd~~~~~~~~l~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~ 354 (689)
T 1yiq_A 277 IVAVNADTGEYVWHYQTTP-GDAWDYTATQHMILAELPI-DGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTK 354 (689)
T ss_dssp EEEEETTTCCEEEEEESST-TCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred EEEEEccCCceeEeeecCC-cccccccCCCCcEEEeecc-CCcEEEEEEEECCCCeEEEEECCCCCEecccccccccccc
Confidence 9999999999998886321 21 1222222222 343 7889999999999999987654322211000000
Q ss_pred C---CCCcc-----------ceeceEEEeeccc--ceEEEEec--CCEEEEEee--------------------------
Q 019117 223 K---FPTKY-----------VQFPVFIASVHSN--YVDCNRWL--GDFILSKSV-------------------------- 258 (346)
Q Consensus 223 ~---~~~~~-----------~~~~~~~~~~~~~--~i~~~~~~--~~~l~~~~~-------------------------- 258 (346)
. ..... ............. .-..++++ .+++++...
T Consensus 355 ~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 434 (689)
T 1yiq_A 355 GMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGL 434 (689)
T ss_dssp EEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSS
T ss_pred ccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCc
Confidence 0 00000 0000000000000 00012333 233333211
Q ss_pred -------------------cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117 259 -------------------DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (346)
Q Consensus 259 -------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd 319 (346)
+|.|+.||+.+++ .+..+..+. ++..-.++..+ .+++.++.||.|+.||
T Consensus 435 ~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~---------~~W~~~~~~-~~~~g~~~tag--glvf~gt~dg~l~a~D 502 (689)
T 1yiq_A 435 RTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ---------AAWEVPYVT-IFNGGTLSTAG--NLVFEGSADGRVIAYA 502 (689)
T ss_dssp EECCCCSSHHHHHHHHTTCEEEEEEEETTTTE---------EEEEEEESS-SCCCCEEEETT--TEEEEECTTSEEEEEE
T ss_pred cccccCcccccCCCCCCCcceeEEEEECCCCC---------eEeEccCCC-CccCccceECC--CEEEEECCCCcEEEEE
Confidence 4789999999887 333333322 23333566666 5888899999999999
Q ss_pred cCCCCcceeeeeeeeE--EEEEecCCCC
Q 019117 320 LQSSPPVLIARLICFS--LHVKYNPQSV 345 (346)
Q Consensus 320 ~~~~~~~~~~~~~~~~--~~~~~spdg~ 345 (346)
.++|+.+-.+++...+ .-+.|+.||+
T Consensus 503 ~~tG~~lw~~~~~~~~~~~p~ty~~~G~ 530 (689)
T 1yiq_A 503 ADTGEKLWEQPAASGVMAAPVTYSVDGE 530 (689)
T ss_dssp TTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred CCCCccceeeeCCCCcccCceEEEECCE
Confidence 9999988777766443 2366677764
No 225
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.33 E-value=8.7e-10 Score=89.37 Aligned_cols=216 Identities=7% Similarity=-0.081 Sum_probs=135.5
Q ss_pred EEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEE
Q 019117 87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI 166 (346)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 166 (346)
....|. ++|+.++++...++.|..|+. +++ ...+..+...+..+++++ +++++++...++.|.+|+.. ++....
T Consensus 48 egp~~~--~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~-g~~~~~ 121 (305)
T 3dr2_A 48 EGPAWW--EAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRSDAD-GQAHLL 121 (305)
T ss_dssp EEEEEE--GGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred cCCeEe--CCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEECCC-CCEEEE
Confidence 345666 888746777778899999997 444 344555667789999999 77766665566789999986 554332
Q ss_pred ecccCC-CCcceEEEEecCCCCcEEEE----Eec-------------CCeEEEEEccccceeeeeceeecCCCCCCCCcc
Q 019117 167 FAGAGG-HRNEVLSVDFHPSDIYRIAS----CGM-------------DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY 228 (346)
Q Consensus 167 ~~~~~~-~~~~v~~~~~~~~~~~~l~s----~~~-------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (346)
.....+ ....+..++++| ++.++++ |.. .+.|..||..+.+
T Consensus 122 ~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~-------------------- 180 (305)
T 3dr2_A 122 VGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP-------------------- 180 (305)
T ss_dssp ECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC--------------------
T ss_pred EeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc--------------------
Confidence 221111 123567899998 8888876 332 2456666664421
Q ss_pred ceeceEEEeecccceEEEEec--CCEEEEEeec------CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeec
Q 019117 229 VQFPVFIASVHSNYVDCNRWL--GDFILSKSVD------NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD 300 (346)
Q Consensus 229 ~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 300 (346)
+..+. .......++|+ ++.|+.+... +.|.+|++..... ........ ...+....+++.++
T Consensus 181 ----~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l----~~~~~~~~--~~~~~pdgi~~d~~ 249 (305)
T 3dr2_A 181 ----LQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL----HDRRHFAS--VPDGLPDGFCVDRG 249 (305)
T ss_dssp ----CEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE----EEEEEEEC--CSSSCCCSEEECTT
T ss_pred ----EEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc----cCCeEEEE--CCCCCCCeEEECCC
Confidence 11111 23345677887 6667766654 7899999875320 00001111 12334566889998
Q ss_pred CCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCC
Q 019117 301 FHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLHVKYNPQSV 345 (346)
Q Consensus 301 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~ 345 (346)
+ + |.++..+ .|.+|+. +++.+..+.....+..++|+|+++
T Consensus 250 G--~-lwv~~~~-gv~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~ 289 (305)
T 3dr2_A 250 G--W-LWSSSGT-GVCVFDS-DGQLLGHIPTPGTASNCTFDQAQQ 289 (305)
T ss_dssp S--C-EEECCSS-EEEEECT-TSCEEEEEECSSCCCEEEECTTSC
T ss_pred C--C-EEEecCC-cEEEECC-CCCEEEEEECCCceeEEEEeCCCC
Confidence 8 4 4444444 4999998 466566666666678899999875
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.32 E-value=4.1e-10 Score=101.08 Aligned_cols=277 Identities=8% Similarity=0.023 Sum_probs=157.3
Q ss_pred cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec------CCeEEEEEccCcceee
Q 019117 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI------NGIIRVIDVSNEKLHK 122 (346)
Q Consensus 50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~ 122 (346)
..++.++.++ +..+|..+++.+..+...........+...-.. .++ .++.++. ++.|..+|..+++.+.
T Consensus 129 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~--~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKG--KVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETT--EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECC--EEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 4555666555 999999999987776532010000111111111 134 4555543 6999999999999887
Q ss_pred eeccCCCc--------------------------------eEEEEEeCCCCceEEEeeCCC-------------------
Q 019117 123 SFVGHGDS--------------------------------INEIRTQPLKPSLVVSASKDE------------------- 151 (346)
Q Consensus 123 ~~~~~~~~--------------------------------v~~~~~~~~~~~~l~s~~~d~------------------- 151 (346)
.+...... ...+++.| +...++.+..++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~ 283 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLA 283 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeE
Confidence 76532211 13577888 667777776553
Q ss_pred CEEEEecCCCeeEEEecccCCCC-------cceEEEEecCCCC---cEEEEEecCCeEEEEEccccceeeeeceeecCCC
Q 019117 152 SVRLWNVQTGICILIFAGAGGHR-------NEVLSVDFHPSDI---YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLP 221 (346)
Q Consensus 152 ~i~iwd~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 221 (346)
.|..+|.++++.+..++... |. ....-+.... ++ ..++.++.+|.+.++|..+++......+......
T Consensus 284 sv~AlD~~TG~~~W~~~~~~-~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~ 361 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETP-GDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWA 361 (677)
T ss_dssp EEEEECTTTCCEEEEEESST-TCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred EEEEEECCCCCEEEEEecCC-CcccccccCCCcEEEeccc-CCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcc
Confidence 49999999999998876421 21 1222233333 45 6889999999999999998665433221110000
Q ss_pred CCC--CCccc--------eeceEEEeecccc--eEEEEec--CCEEEEEee-----------------------------
Q 019117 222 SKF--PTKYV--------QFPVFIASVHSNY--VDCNRWL--GDFILSKSV----------------------------- 258 (346)
Q Consensus 222 ~~~--~~~~~--------~~~~~~~~~~~~~--i~~~~~~--~~~l~~~~~----------------------------- 258 (346)
... ..+.. ...........+. -..++++ ..++++...
T Consensus 362 ~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 441 (677)
T 1kb0_A 362 SGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWN 441 (677)
T ss_dssp EEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCC
T ss_pred cccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccc
Confidence 000 00000 0000000000000 0123343 344444332
Q ss_pred --------------cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 259 --------------DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 259 --------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
.+.|..||+.+++ .+.++.. ..++....++.++ .+++.++.||.+++||..+++
T Consensus 442 ~g~~~~~~~~~~~~~g~l~A~D~~tG~---------~~W~~~~-~~~~~~g~~~~~g--~~v~~g~~dg~l~a~D~~tG~ 509 (677)
T 1kb0_A 442 TAKFFNAEPPKSKPFGRLLAWDPVAQK---------AAWSVEH-VSPWNGGTLTTAG--NVVFQGTADGRLVAYHAATGE 509 (677)
T ss_dssp CCEEECSSCCCSCCEEEEEEEETTTTE---------EEEEEEE-SSSCCCCEEEETT--TEEEEECTTSEEEEEETTTCC
T ss_pred cccccccccCCCCCccEEEEEeCCCCc---------EEeecCC-CCCCcCcceEeCC--CEEEEECCCCcEEEEECCCCc
Confidence 2789999999887 3333332 2234445577777 578888999999999999999
Q ss_pred cceeeeeeeeE--EEEEecCCCC
Q 019117 325 PVLIARLICFS--LHVKYNPQSV 345 (346)
Q Consensus 325 ~~~~~~~~~~~--~~~~~spdg~ 345 (346)
.+..+.+...+ .-+.|+++|+
T Consensus 510 ~lw~~~~~~~~~~~p~~y~~~G~ 532 (677)
T 1kb0_A 510 KLWEAPTGTGVVAAPSTYMVDGR 532 (677)
T ss_dssp EEEEEECSSCCCSCCEEEEETTE
T ss_pred eeeeeeCCCCcccCCEEEEeCCE
Confidence 88777765432 2255556653
No 227
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.29 E-value=8.3e-13 Score=109.98 Aligned_cols=179 Identities=8% Similarity=-0.021 Sum_probs=95.9
Q ss_pred CccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeecc
Q 019117 48 YFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG 126 (346)
Q Consensus 48 ~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 126 (346)
++..+++++.++ |+.||..+++.+..+.. . .+.+..+. .++. .+++++.||.|+.||..+++.+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~-----~~~s~p~~--~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~ 77 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--D-----PVLQVPTH--VEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPF 77 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--C-----CSCCCC-------C-CEEECTTTCCEEEC-----CCSEECSC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--C-----CceecceE--cCCC-EEEEeCCCCEEEEEECCCCceeeeeec
Confidence 356777777766 99999999998777653 1 12222222 5566 777788999999999999987766543
Q ss_pred CCC-ceE-EEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEc
Q 019117 127 HGD-SIN-EIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 204 (346)
Q Consensus 127 ~~~-~v~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~ 204 (346)
+.. .+. ...+. .+..+++++.|+.|..||.++|+.+..+. .+. ...++| .+..+++++.|+.|..||.
T Consensus 78 ~~~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~~---~~~----~~~~~p-~~~~v~~~~~dg~v~a~d~ 147 (369)
T 2hz6_A 78 TIPELVQASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTLS---SAF----ADSLSP-STSLLYLGRTEYTITMYDT 147 (369)
T ss_dssp CHHHHHTTCSCC-------CCCCEEEEEEEEECCC------------------------------EEEEEEEEEEECCCS
T ss_pred cCccccccCceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEec---CCC----cccccc-cCCEEEEEecCCEEEEEEC
Confidence 321 110 00111 24567788889999999999999988876 222 234566 6778888999999999999
Q ss_pred cccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecC-----CEEEEEeecCeEEEEcCCCCC
Q 019117 205 KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG-----DFILSKSVDNEIVLWEPKMKE 271 (346)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~l~~~~~d~~i~iwd~~~~~ 271 (346)
++++...... .... ....+.+ ..+++++.||.|..||..+++
T Consensus 148 ~tG~~~W~~~---------------------~~~~----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 148 KTRELRWNAT---------------------YFDY----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp SSSSCCCEEE---------------------EEEE----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred CCCCEEEeEe---------------------cccc----cCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence 8844211111 0011 1111222 567788899999999999887
No 228
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.25 E-value=3.1e-09 Score=96.13 Aligned_cols=215 Identities=10% Similarity=0.014 Sum_probs=124.5
Q ss_pred EEEcCCCCcEEEE-----eecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCC-------------C
Q 019117 91 WACNVDGIPFLVA-----GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE-------------S 152 (346)
Q Consensus 91 ~~~~~~~~~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-------------~ 152 (346)
+.++|||+ +||. |+....|++||+.+++.+.... +......++|+ + ++.|+.++.+. .
T Consensus 134 ~~~SpDg~-~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-D-g~~l~y~~~~~~~~~~~~~~~~~~~ 209 (693)
T 3iuj_A 134 LSFSRDGR-ILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-G-NEGFFYSSYDKPDGSELSARTDQHK 209 (693)
T ss_dssp EEECTTSS-EEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-T-TTEEEEEESSCCC-------CCCCE
T ss_pred EEECCCCC-EEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-C-CCEEEEEEecCcccccccccCCCcE
Confidence 44569999 7773 3333579999999998654311 11113567898 4 45566555553 3
Q ss_pred EEEEecCCCee--EEEecccCC-CCcceEEEEecCCCCcEEE-EEec---CCeEEEEEccccceeeeeceeecCCCCCCC
Q 019117 153 VRLWNVQTGIC--ILIFAGAGG-HRNEVLSVDFHPSDIYRIA-SCGM---DNTVKIWSMKEFWTYVEKSFTWTDLPSKFP 225 (346)
Q Consensus 153 i~iwd~~~~~~--~~~~~~~~~-~~~~v~~~~~~~~~~~~l~-s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 225 (346)
|++|++.++.. ...+.. .. +......+.|+| ++++|+ +.+. +..|.++|+.....
T Consensus 210 v~~~~lgt~~~~~~~v~~~-~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~---------------- 271 (693)
T 3iuj_A 210 VYFHRLGTAQEDDRLVFGA-IPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENA---------------- 271 (693)
T ss_dssp EEEEETTSCGGGCEEEESC-SGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTC----------------
T ss_pred EEEEECCCCcccceEEEec-CCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCC----------------
Confidence 99999876643 222321 12 344578899999 666664 4332 25899999876311
Q ss_pred CccceeceEEEeecccceEEE-EecCCEEEEEe-e---cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeec
Q 019117 226 TKYVQFPVFIASVHSNYVDCN-RWLGDFILSKS-V---DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD 300 (346)
Q Consensus 226 ~~~~~~~~~~~~~~~~~i~~~-~~~~~~l~~~~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 300 (346)
....+..+....... ...++.|+..+ . .+.|..+|+.++.. .....+..+...+. .|+++
T Consensus 272 ------~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~-------~~~~~l~~~~~~~~--~~s~~ 336 (693)
T 3iuj_A 272 ------PLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGP-------AHWRDLIPERQQVL--TVHSG 336 (693)
T ss_dssp ------CCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG-------GGCEEEECCCSSCE--EEEEE
T ss_pred ------ceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc-------cccEEEecCCCCEE--EEEEE
Confidence 223344444444443 22255554443 3 36799999987541 01223333444444 89999
Q ss_pred CCcceEEEEc-CCC--cEEEEEcCCCCcceeeeee--eeEEEEEecCCCC
Q 019117 301 FHYNAAAIGN-REG--KIFVWELQSSPPVLIARLI--CFSLHVKYNPQSV 345 (346)
Q Consensus 301 ~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~--~~~~~~~~spdg~ 345 (346)
+ ..|+... .++ .|++|++.++. .....+. +.+..+.++|+++
T Consensus 337 g--~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~ 383 (693)
T 3iuj_A 337 S--GYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDP 383 (693)
T ss_dssp T--TEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCS
T ss_pred C--CEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCC
Confidence 8 4555544 444 68999987553 2333322 3455677777765
No 229
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.22 E-value=6.2e-09 Score=81.15 Aligned_cols=194 Identities=10% Similarity=0.004 Sum_probs=126.4
Q ss_pred EEEEEEEcCCCCcEEEEeec--CCeEEEEEccCcceeeeeccCC-CceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee
Q 019117 87 YTVSWACNVDGIPFLVAGGI--NGIIRVIDVSNEKLHKSFVGHG-DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC 163 (346)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 163 (346)
..+.+. +++. ++++.+. ++.|+++|+.+++.+..+.-.. .....+++. ++.+.++.-.++.+.++|..+.+.
T Consensus 24 ~Gl~~~--~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 24 QGLVYA--ENDT-LFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp EEEEEC--STTE-EEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred ccEEEe--CCCe-EEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence 445554 7765 5555443 6899999999999888775322 223456665 345666666789999999999999
Q ss_pred EEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee--cc-
Q 019117 164 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV--HS- 240 (346)
Q Consensus 164 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~- 240 (346)
+..+.. + ...-..+ +++++.++ .+..++.|.++|..+.+. ...+.. +.
T Consensus 99 ~~~i~~--g-~~~g~gl--t~Dg~~l~-vs~gs~~l~viD~~t~~v-----------------------~~~I~Vg~~~~ 149 (266)
T 2iwa_A 99 IKNFTH--Q-MKDGWGL--ATDGKILY-GSDGTSILYEIDPHTFKL-----------------------IKKHNVKYNGH 149 (266)
T ss_dssp EEEEEC--C-SSSCCEE--EECSSSEE-EECSSSEEEEECTTTCCE-----------------------EEEEECEETTE
T ss_pred EEEEEC--C-CCCeEEE--EECCCEEE-EECCCCeEEEEECCCCcE-----------------------EEEEEECCCCc
Confidence 998863 1 1222334 44244544 445688999999988432 112211 11
Q ss_pred --cceEEEEecCCEEEEEe-ecCeEEEEcCCCCCCCCCCccccccccccCC-------------CcCeeEEEEeecCCcc
Q 019117 241 --NYVDCNRWLGDFILSKS-VDNEIVLWEPKMKEQSPGEGTADILQKYPVP-------------ECDIWFIKFSCDFHYN 304 (346)
Q Consensus 241 --~~i~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~~ 304 (346)
..+..+.|.+..+.+.. .++.|.+.|+.+++. +..+... ......++|+|+++ +
T Consensus 150 p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V---------~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~-~ 219 (266)
T 2iwa_A 150 RVIRLNELEYINGEVWANIWQTDCIARISAKDGTL---------LGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK-R 219 (266)
T ss_dssp ECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCE---------EEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT-E
T ss_pred ccccceeEEEECCEEEEecCCCCeEEEEECCCCcE---------EEEEECCCcccccccccccccCceEEEEEcCCCC-E
Confidence 12455556533444444 578999999999873 3333221 13568999999986 6
Q ss_pred eEEEEcCCCcEEEEEcCCCC
Q 019117 305 AAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 305 ~l~~~~~dg~i~iwd~~~~~ 324 (346)
+++++...+.+.+.++....
T Consensus 220 lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 220 IFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEEETTCSEEEEEEEEECC
T ss_pred EEEECCCCCeEEEEEEeccc
Confidence 88889899999999987754
No 230
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.20 E-value=1.9e-09 Score=88.84 Aligned_cols=222 Identities=7% Similarity=-0.142 Sum_probs=129.0
Q ss_pred eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEee----------CCCCEEEEecCCCeeEEEecccCCC----C
Q 019117 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS----------KDESVRLWNVQTGICILIFAGAGGH----R 174 (346)
Q Consensus 109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~----~ 174 (346)
.|.++|..+++.+.++.....+ .+.++| +++.++++. .++.|.+||+.+++.+..+....+. .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 8899999999999998865555 799999 777777665 4788999999999999998631000 1
Q ss_pred cceEEEEecCCCCcEEEEEec--CCeEEE--EEccccceeeeec-e---eecC----CCCCCCCccc-----------ee
Q 019117 175 NEVLSVDFHPSDIYRIASCGM--DNTVKI--WSMKEFWTYVEKS-F---TWTD----LPSKFPTKYV-----------QF 231 (346)
Q Consensus 175 ~~v~~~~~~~~~~~~l~s~~~--d~~i~i--wd~~~~~~~~~~~-~---~~~~----~~~~~~~~~~-----------~~ 231 (346)
.....++++| ++++++++.. +..|.+ +|+.+. ...... . .... .......+.. ..
T Consensus 124 ~~P~~ia~Sp-DGk~lyVan~~~~~~v~V~~iD~~tv-~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~ 201 (368)
T 1mda_H 124 PRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASDD-QLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGI 201 (368)
T ss_dssp CCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEEE-EEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred CCcceEEEcC-CCCEEEEEccCCCCeEEEEEEchhhc-eEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCe
Confidence 3467899999 7777777764 457888 888761 111000 0 0000 0000000000 00
Q ss_pred ceE----EEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccC----------CCcCeeEEEE
Q 019117 232 PVF----IASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV----------PECDIWFIKF 297 (346)
Q Consensus 232 ~~~----~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~ 297 (346)
... .+.....+. . ...+..++..+. +.|.+.|..+.... .+..+.. .......+++
T Consensus 202 v~~~~t~~i~vg~~P~-~-~~~~~~~~~vs~-~~V~viD~~~~~~~-------v~~~~~~~~~~~~~~~~~p~g~~~v~~ 271 (368)
T 1mda_H 202 VGAQCTGAQNCSSQAA-Q-ANYPGMLVWAVA-SSILQGDIPAAGAT-------MKAAIDGNESGRKADNFRSAGFQMVAK 271 (368)
T ss_dssp CCCCSCTTSCBCSCCE-E-ETTTTEEEECBS-SCCEEEECCSSCCE-------EECCCCSSCTHHHHTTEEECSSSCEEE
T ss_pred EEEEeeeeeeCCCCcc-c-cccCCEEEEEcC-CEEEEEECCCCcce-------EEEEEEeccccccccccccCcceeeEE
Confidence 000 000000111 1 111444444445 78888887643210 1111110 0111222689
Q ss_pred eecCCcceEEEEc---C-----CCcEEEEEcCCCCcceeeeeeeeEEEEEecCCCCC
Q 019117 298 SCDFHYNAAAIGN---R-----EGKIFVWELQSSPPVLIARLICFSLHVKYNPQSVY 346 (346)
Q Consensus 298 s~~~~~~~l~~~~---~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~spdg~~ 346 (346)
+||++ +++++.. . ++.+.++|+.+.+.+..+.....+..++|+|||++
T Consensus 272 s~dg~-~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~ 327 (368)
T 1mda_H 272 LKNTD-GIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGAS 327 (368)
T ss_dssp ETTTT-EEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSC
T ss_pred cCCCC-EEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCE
Confidence 99985 2333322 2 23566999999998888888888999999999973
No 231
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.18 E-value=2.7e-08 Score=83.09 Aligned_cols=231 Identities=11% Similarity=0.019 Sum_probs=138.6
Q ss_pred cEEEEEcCC-cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCC
Q 019117 50 NVFATVGGN-RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG 128 (346)
Q Consensus 50 ~~la~~~~~-~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 128 (346)
..+..++.+ .|..+|..+++......... ........ .++ .++.++.++.|..+|..+++.+.......
T Consensus 104 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~-----~~~~~p~~---~~~--~v~v~~~~g~l~~~d~~tG~~~W~~~~~~ 173 (376)
T 3q7m_A 104 GHVYIGSEKAQVYALNTSDGTVAWQTKVAG-----EALSRPVV---SDG--LVLIHTSNGQLQALNEADGAVKWTVNLDM 173 (376)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECSS-----CCCSCCEE---ETT--EEEEECTTSEEEEEETTTCCEEEEEECCC
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEEeCCC-----ceEcCCEE---ECC--EEEEEcCCCeEEEEECCCCcEEEEEeCCC
Confidence 344444444 49999998888766554211 10000111 233 67788889999999999999887765432
Q ss_pred Cce-----EEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCC-cceEE---EEecC-CCCcEEEEEecCCe
Q 019117 129 DSI-----NEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR-NEVLS---VDFHP-SDIYRIASCGMDNT 198 (346)
Q Consensus 129 ~~v-----~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~v~~---~~~~~-~~~~~l~s~~~d~~ 198 (346)
... ...... +..++.+..++.|..+|..+++.+.......... ..+.. +...| ..+..++.++.++.
T Consensus 174 ~~~~~~~~~~~~~~---~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~ 250 (376)
T 3q7m_A 174 PSLSLRGESAPTTA---FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGN 250 (376)
T ss_dssp -----CCCCCCEEE---TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSC
T ss_pred CceeecCCCCcEEE---CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcE
Confidence 211 122222 3467778889999999999999888775211000 00000 10111 02345777778899
Q ss_pred EEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCcc
Q 019117 199 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGT 278 (346)
Q Consensus 199 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 278 (346)
+..+|..+++... ... ......+...++.++.++.++.|..+|..+++.
T Consensus 251 l~~~d~~tG~~~w-----------------------~~~--~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~------ 299 (376)
T 3q7m_A 251 LTALDLRSGQIMW-----------------------KRE--LGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVT------ 299 (376)
T ss_dssp EEEEETTTCCEEE-----------------------EEC--CCCEEEEEEETTEEEEEETTCCEEEEETTTCCE------
T ss_pred EEEEECCCCcEEe-----------------------ecc--CCCCCCceEECCEEEEEcCCCeEEEEECCCCcE------
Confidence 9999998743211 111 112334445588888889999999999998873
Q ss_pred cccccccc-CCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeee
Q 019117 279 ADILQKYP-VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL 331 (346)
Q Consensus 279 ~~~~~~~~-~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 331 (346)
+.... .....+...... + ..|+.++.+|.|+++|..+++.+.....
T Consensus 300 ---~w~~~~~~~~~~~~~~~~--~--~~l~v~~~~g~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 300 ---LWTQSDLLHRLLTSPVLY--N--GNLVVGDSEGYLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp ---EEEECTTTTSCCCCCEEE--T--TEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ---EEeecccCCCcccCCEEE--C--CEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence 22222 111112222222 3 3688888999999999999987665554
No 232
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.17 E-value=3.2e-08 Score=77.19 Aligned_cols=186 Identities=11% Similarity=-0.030 Sum_probs=125.0
Q ss_pred ceeeeeccCCC--ceEEEEEeCCCCceEEEeeC--CCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe
Q 019117 119 KLHKSFVGHGD--SINEIRTQPLKPSLVVSASK--DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 194 (346)
Q Consensus 119 ~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 194 (346)
+.+.+++ |.. ....+.|++ ++.++++.+. ++.|.++|+.+++.+..+... .......+++. ++.+.++.-
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~--~~~fgeGi~~~--g~~lyv~t~ 83 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMD--DSYFGEGLTLL--NEKLYQVVW 83 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECC--TTCCEEEEEEE--TTEEEEEET
T ss_pred eEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecC--CCcceEEEEEe--CCEEEEEEe
Confidence 4555664 443 357999998 5655555543 579999999999999887631 22233456665 456666666
Q ss_pred cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCC
Q 019117 195 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSP 274 (346)
Q Consensus 195 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 274 (346)
.++.+.++|..+.+. +..+..-...-..++++++.++++..++.|.++|..+.+
T Consensus 84 ~~~~v~viD~~t~~v-----------------------~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~--- 137 (266)
T 2iwa_A 84 LKNIGFIYDRRTLSN-----------------------IKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFK--- 137 (266)
T ss_dssp TCSEEEEEETTTTEE-----------------------EEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCC---
T ss_pred cCCEEEEEECCCCcE-----------------------EEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCc---
Confidence 788999999988432 223322111123466666666666678999999998876
Q ss_pred CCccccccccccCC-----CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee--------------eE
Q 019117 275 GEGTADILQKYPVP-----ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC--------------FS 335 (346)
Q Consensus 275 ~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------------~~ 335 (346)
.+..+... -..+..+.|. ++ .+.+....++.|.+.|.++++.+..+.+.+ ..
T Consensus 138 ------v~~~I~Vg~~~~p~~~~nele~~-dg--~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~ 208 (266)
T 2iwa_A 138 ------LIKKHNVKYNGHRVIRLNELEYI-NG--EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVL 208 (266)
T ss_dssp ------EEEEEECEETTEECCCEEEEEEE-TT--EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCE
T ss_pred ------EEEEEEECCCCcccccceeEEEE-CC--EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCce
Confidence 33333321 1246678888 66 566777678899999999999877777642 35
Q ss_pred EEEEecCCCC
Q 019117 336 LHVKYNPQSV 345 (346)
Q Consensus 336 ~~~~~spdg~ 345 (346)
+.++|+|+++
T Consensus 209 nGIa~~~~~~ 218 (266)
T 2iwa_A 209 NGIAWDQENK 218 (266)
T ss_dssp EEEEEETTTT
T ss_pred EEEEEcCCCC
Confidence 7899999985
No 233
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.16 E-value=5.2e-09 Score=86.30 Aligned_cols=241 Identities=7% Similarity=-0.081 Sum_probs=140.6
Q ss_pred cCCCceEEEEEEeecCCCccEEEEEcC------CcEEEEEeccCceeeeEeeeec-CCCccceEEEEEEEcCCCCcEEEE
Q 019117 31 EGKRPLYAVVFNFIDSRYFNVFATVGG------NRVTVYQCLEGGVIAALQSYVD-EDKEESFYTVSWACNVDGIPFLVA 103 (346)
Q Consensus 31 ~h~~~v~~~~~~p~~~~~~~~la~~~~------~~v~i~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~ 103 (346)
+|...+.+|+++| +++++++-.. ..|.+||+.+++.+..+..... ..+...+..+++. +++...+++
T Consensus 64 ~~~~~p~gv~~d~----~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd--~~~g~~yvt 137 (343)
T 2qe8_A 64 ITFDTVLGIKSDG----NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVD--LIHNFVYIS 137 (343)
T ss_dssp CCCSCEEEEEECS----SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEE--TTTTEEEEE
T ss_pred cceeEeeEEEEcC----CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEe--cCCCEEEEE
Confidence 4567899999998 6777776543 4599999888876665542111 0112234556665 655424555
Q ss_pred ee---cCCeEEEEEccCcceeeeeccCCCceE-EEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEE
Q 019117 104 GG---INGIIRVIDVSNEKLHKSFVGHGDSIN-EIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS 179 (346)
Q Consensus 104 ~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 179 (346)
-. .++.|.+||+.+++..+.+.+|..... ...+.+ ++..+.+.+.++.++.|. ..+..
T Consensus 138 d~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~~-----------------~~~~g 199 (343)
T 2qe8_A 138 DPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVI-DGVPVQIGQPDGTVIRPH-----------------LGVNG 199 (343)
T ss_dssp ECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEE-TTEECBEECTTSCEECCC-----------------CCEEE
T ss_pred cCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeE-CCEEEEeccCCCceecee-----------------cccce
Confidence 54 678999999998887776665432111 133445 556666667777765542 13578
Q ss_pred EEecCCCCcEEEEEecCC-eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEE
Q 019117 180 VDFHPSDIYRIASCGMDN-TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK 256 (346)
Q Consensus 180 ~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~ 256 (346)
++|+| +++.|+.+..++ .+..++........ .........+ ...++......++++ |+++++.
T Consensus 200 ia~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~------------~~~~~~~~~~-~~~g~~g~pdgia~d~~G~l~va~ 265 (343)
T 2qe8_A 200 IVLDA-ENEWLYLSPMHSTSMYRIKSADLSNLQ------------LTDAELGSKI-ERYSEKPICDGISIDKDHNIYVGD 265 (343)
T ss_dssp EEECT-TSCEEEEEESSCSEEEEEEHHHHTCTT------------CCHHHHHTTC-EEEEECCSCSCEEECTTCCEEEEE
T ss_pred eEecc-CCCEEEEEeCCCCeEEEEEHHHhcCCC------------CChhhhhcce-EecccCCCCceEEECCCCCEEEEc
Confidence 99999 777777776655 45545433211000 0000000001 111233344456676 7788888
Q ss_pred eecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEE
Q 019117 257 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (346)
Q Consensus 257 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd 319 (346)
..++.|.+||..+++. ..+.... ....+.+++|.+++ .++++.+..+.+.+|+
T Consensus 266 ~~~~~V~~~d~~~G~~-------~~~~~~~-~~~~p~~va~~~~g--~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 266 LAHSAIGVITSADRAY-------KLLVTDE-KLSWTDSFNFGSDG--YLYFDCNQLHHSAPLN 318 (343)
T ss_dssp GGGTEEEEEETTTTEE-------EEEEECG-GGSCEEEEEECTTS--CEEEEECCGGGSGGGB
T ss_pred cCCCeEEEEECCCCCE-------EEEEECC-ceecCCeeEECCCC--cEEEEeCccccccccc
Confidence 8899999999844431 1111111 23467899999987 5666666555554444
No 234
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.13 E-value=5e-07 Score=71.51 Aligned_cols=222 Identities=9% Similarity=0.019 Sum_probs=128.1
Q ss_pred CceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117 34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 112 (346)
..+..++|+|. .+.++++-..++ |..++.........+. ........+++. +++..++++-...+.|.+
T Consensus 36 ~~~~gi~~d~~---~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-----~~~~~p~~ia~d--~~~~~lyv~d~~~~~I~~ 105 (267)
T 1npe_A 36 KVIIGLAFDCV---DKVVYWTDISEPSIGRASLHGGEPTTIIR-----QDLGSPEGIALD--HLGRTIFWTDSQLDRIEV 105 (267)
T ss_dssp EEEEEEEEETT---TTEEEEEETTTTEEEEEESSSCCCEEEEC-----TTCCCEEEEEEE--TTTTEEEEEETTTTEEEE
T ss_pred CcEEEEEEecC---CCEEEEEECCCCEEEEEecCCCCcEEEEE-----CCCCCccEEEEE--ecCCeEEEEECCCCEEEE
Confidence 34678999871 245555555444 9999976543322221 111344556655 765525555566789999
Q ss_pred EEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeC--CCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEE
Q 019117 113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK--DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI 190 (346)
Q Consensus 113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 190 (346)
++++.................++++|.++.++++... .+.|..+++. ++....+.. ........++++|+++.++
T Consensus 106 ~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d-g~~~~~~~~--~~~~~P~gia~d~~~~~ly 182 (267)
T 1npe_A 106 AKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTNRRILAQ--DNLGLPNGLTFDAFSSQLC 182 (267)
T ss_dssp EETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCCCEEEEC--TTCSCEEEEEEETTTTEEE
T ss_pred EEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC-CCCcEEEEE--CCCCCCcEEEEcCCCCEEE
Confidence 9986543222222222457899999933444444333 3678888875 333333321 1234678999998445556
Q ss_pred EEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEe-ecCeEEEEcCCC
Q 019117 191 ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKS-VDNEIVLWEPKM 269 (346)
Q Consensus 191 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~-~d~~i~iwd~~~ 269 (346)
++-...+.|.++|+..... ..... .......++..++.++.+. ..+.|.++|..+
T Consensus 183 v~d~~~~~I~~~~~~g~~~-----------------------~~~~~-~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~ 238 (267)
T 1npe_A 183 WVDAGTHRAECLNPAQPGR-----------------------RKVLE-GLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAI 238 (267)
T ss_dssp EEETTTTEEEEEETTEEEE-----------------------EEEEE-CCCSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred EEECCCCEEEEEecCCCce-----------------------EEEec-CCCCceEEEEeCCEEEEEECCCCeEEEEeCCC
Confidence 6666678999999875211 00111 1122344555555555554 568999999987
Q ss_pred CCCCCCCccccccccccCCC-cCeeEEEEeecC
Q 019117 270 KEQSPGEGTADILQKYPVPE-CDIWFIKFSCDF 301 (346)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~ 301 (346)
++ .+..+.... .....+++.|++
T Consensus 239 g~---------~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 239 SK---------EMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp TE---------EEEEECCSSCCCCCCEEEECSC
T ss_pred CC---------ceEEEccccccccceeeecCcc
Confidence 76 344443322 246778888876
No 235
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.13 E-value=4.5e-08 Score=81.79 Aligned_cols=237 Identities=9% Similarity=0.052 Sum_probs=138.4
Q ss_pred cEEEEEcCC-cEEEEEeccCceeeeEeeeecCC----CccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeee
Q 019117 50 NVFATVGGN-RVTVYQCLEGGVIAALQSYVDED----KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF 124 (346)
Q Consensus 50 ~~la~~~~~-~v~i~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 124 (346)
..+.+++.+ .|..+|..+++.+.......... ....+.. ... .++. .++.++.++.|..+|..+++.+...
T Consensus 54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~--~~~~-~v~v~~~~g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVT--VSGG-HVYIGSEKAQVYALNTSDGTVAWQT 129 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEE--EETT-EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-Cce--EeCC-EEEEEcCCCEEEEEECCCCCEEEEE
Confidence 455555555 59999998888766554311000 0112221 112 2234 6888888999999999999988776
Q ss_pred ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcce------EEEEecCCCCcEEEEEecCCe
Q 019117 125 VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV------LSVDFHPSDIYRIASCGMDNT 198 (346)
Q Consensus 125 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v------~~~~~~~~~~~~l~s~~~d~~ 198 (346)
............. +..++.++.++.|..+|..+++.+..+.. ...+ ...... +..++.++.++.
T Consensus 130 ~~~~~~~~~p~~~---~~~v~v~~~~g~l~~~d~~tG~~~W~~~~----~~~~~~~~~~~~~~~~---~~~v~~g~~~g~ 199 (376)
T 3q7m_A 130 KVAGEALSRPVVS---DGLVLIHTSNGQLQALNEADGAVKWTVNL----DMPSLSLRGESAPTTA---FGAAVVGGDNGR 199 (376)
T ss_dssp ECSSCCCSCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEEC----CC-----CCCCCCEEE---TTEEEECCTTTE
T ss_pred eCCCceEcCCEEE---CCEEEEEcCCCeEEEEECCCCcEEEEEeC----CCCceeecCCCCcEEE---CCEEEEEcCCCE
Confidence 6443322222232 34777788899999999999998888762 1121 112222 245777888999
Q ss_pred EEEEEccccceeeeeceeecCCCCCCCCccceeceEEE-eecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCCc
Q 019117 199 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEG 277 (346)
Q Consensus 199 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 277 (346)
+..+|..+++............. .....+ ...... ...+..++.++.++.+..+|..+++
T Consensus 200 l~~~d~~tG~~~w~~~~~~~~~~---------~~~~~~~~~~~~p----~~~~~~v~~~~~~g~l~~~d~~tG~------ 260 (376)
T 3q7m_A 200 VSAVLMEQGQMIWQQRISQATGS---------TEIDRLSDVDTTP----VVVNGVVFALAYNGNLTALDLRSGQ------ 260 (376)
T ss_dssp EEEEETTTCCEEEEEECCC--------------------CCCCCC----EEETTEEEEECTTSCEEEEETTTCC------
T ss_pred EEEEECCCCcEEEEEecccCCCC---------cccccccccCCCc----EEECCEEEEEecCcEEEEEECCCCc------
Confidence 99999987543222111000000 000000 000111 1226788888889999999999886
Q ss_pred cccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCccee
Q 019117 278 TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI 328 (346)
Q Consensus 278 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 328 (346)
.+..... .....+.. ++ ..+..++.++.|..+|..+++.+-.
T Consensus 261 ---~~w~~~~--~~~~~~~~--~~--~~l~~~~~~g~l~~~d~~tG~~~w~ 302 (376)
T 3q7m_A 261 ---IMWKREL--GSVNDFIV--DG--NRIYLVDQNDRVMALTIDGGVTLWT 302 (376)
T ss_dssp ---EEEEECC--CCEEEEEE--ET--TEEEEEETTCCEEEEETTTCCEEEE
T ss_pred ---EEeeccC--CCCCCceE--EC--CEEEEEcCCCeEEEEECCCCcEEEe
Confidence 2322221 12333333 33 4677778889999999999875443
No 236
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.12 E-value=2.4e-07 Score=77.04 Aligned_cols=245 Identities=11% Similarity=0.025 Sum_probs=135.8
Q ss_pred CccEEEEEcC-Cc-EEEEEeccC-ceeeeEeeeec-CC--CccceEEEEEEEcCCCCcEEEEeecC------CeEEEEEc
Q 019117 48 YFNVFATVGG-NR-VTVYQCLEG-GVIAALQSYVD-ED--KEESFYTVSWACNVDGIPFLVAGGIN------GIIRVIDV 115 (346)
Q Consensus 48 ~~~~la~~~~-~~-v~i~~~~~~-~~~~~~~~~~~-~~--~~~~v~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~ 115 (346)
++++|...+. +. |.++|..+. ...+..+.... +. ..+.-.-..+.+.|+| +++++..+ |.|.++|.
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECT
T ss_pred cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEEC
Confidence 4566655544 34 999998755 22222222110 00 0000112233445888 55555544 78999999
Q ss_pred cCcceeeeeccCC---CceEEEEEeCCCCceEEEee-------------------CCCCEEEEecCCCeeEEEecccCCC
Q 019117 116 SNEKLHKSFVGHG---DSINEIRTQPLKPSLVVSAS-------------------KDESVRLWNVQTGICILIFAGAGGH 173 (346)
Q Consensus 116 ~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~s~~-------------------~d~~i~iwd~~~~~~~~~~~~~~~~ 173 (346)
++.+.+.++.... ..-..+.|+| +.+.+++.. .+.+|.+||+.+++.+.++.... .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~-~ 249 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE-E 249 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT-T
T ss_pred CCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC-C
Confidence 9999988886322 2245688899 788888874 36899999999998888887311 2
Q ss_pred CcceEEEEe--cCCCCcEEEEEe------cCCeEEEEEccccceeeeeceeecCCCC--CCCCccceeceEEEeecccce
Q 019117 174 RNEVLSVDF--HPSDIYRIASCG------MDNTVKIWSMKEFWTYVEKSFTWTDLPS--KFPTKYVQFPVFIASVHSNYV 243 (346)
Q Consensus 174 ~~~v~~~~~--~~~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i 243 (346)
......+.| +| ++++++.+. .+++|.+|............+.....+. ..+..... +..-....
T Consensus 250 g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~-----f~~~~~~p 323 (462)
T 2ece_A 250 NRMALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKP-----FKAVPPLV 323 (462)
T ss_dssp EEEEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGG-----GTEECCCC
T ss_pred CCccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccc-----cccCCCce
Confidence 234556656 98 666666555 5678888777542211111111000000 00000000 00001234
Q ss_pred EEEEec--CCEEEEEee-cCeEEEEcCCCCCCCCCCccccccccccCC--------------CcCeeEEEEeecCCcceE
Q 019117 244 DCNRWL--GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYPVP--------------ECDIWFIKFSCDFHYNAA 306 (346)
Q Consensus 244 ~~~~~~--~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~~~~s~~~~~~~l 306 (346)
..+.++ +++|.++.. .+.|.+||+..... ...+..+... .+....+.++||| ++|
T Consensus 324 a~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~------~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDG--k~L 395 (462)
T 2ece_A 324 TDIDISLDDKFLYLSLWGIGEVRQYDISNPFK------PVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDG--RRV 395 (462)
T ss_dssp CCEEECTTSCEEEEEETTTTEEEEEECSSTTS------CEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTS--SEE
T ss_pred eEEEECCCCCEEEEEeCCCCEEEEEEecCCCC------cEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCC--CEE
Confidence 556666 777777765 78999999864321 1122222211 1135779999999 566
Q ss_pred EEEc
Q 019117 307 AIGN 310 (346)
Q Consensus 307 ~~~~ 310 (346)
+++.
T Consensus 396 yVaN 399 (462)
T 2ece_A 396 YVTN 399 (462)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 6655
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.11 E-value=1.7e-09 Score=88.63 Aligned_cols=245 Identities=9% Similarity=-0.055 Sum_probs=142.5
Q ss_pred ceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEE
Q 019117 35 PLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVID 114 (346)
Q Consensus 35 ~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd 114 (346)
.+.++...+ ++. +..+..+ +..+|. +++....+.. .........+. ++ .+..++.++.|..+|
T Consensus 61 ~~~~~~~~~----~g~-l~v~t~~-l~~~d~-~g~~~~~~~~-----~~~~~~~~~~~---~~--~l~v~t~~~~l~~~d 123 (330)
T 3hxj_A 61 IECRPSIGK----DGT-IYFGSDK-VYAINP-DGTEKWRFDT-----KKAIVSDFTIF---ED--ILYVTSMDGHLYAIN 123 (330)
T ss_dssp EEECCEETT----TTE-ECCSSCE-EEEECC-CGGGGGGSCC----------CCEEEE---TT--EEEEECTTSEEEEEC
T ss_pred cccceEEec----CCc-EEEecCc-EEEECC-CCcEEEEEEC-----CCCcccCceEE---CC--EEEEEecCCEEEEEc
Confidence 344555443 444 4445555 878874 5554333221 11111112222 34 577888889999999
Q ss_pred ccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe
Q 019117 115 VSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 194 (346)
Q Consensus 115 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 194 (346)
.. ++.......+...+.++...+ ++ .++.++.++.|..+|.. ++.+..+. .....+.++...+ ++.+++ ++
T Consensus 124 ~~-g~~~~~~~~~~~~~~~~~~~~-~g-~l~vgt~~~~l~~~d~~-g~~~~~~~---~~~~~~~~~~~d~-~g~l~v-~t 194 (330)
T 3hxj_A 124 TD-GTEKWRFKTKKAIYATPIVSE-DG-TIYVGSNDNYLYAINPD-GTEKWRFK---TNDAITSAASIGK-DGTIYF-GS 194 (330)
T ss_dssp TT-SCEEEEEECSSCCCSCCEECT-TS-CEEEECTTSEEEEECTT-SCEEEEEE---CSSCCCSCCEECT-TCCEEE-ES
T ss_pred CC-CCEEEEEcCCCceeeeeEEcC-CC-EEEEEcCCCEEEEECCC-CCEeEEEe---cCCCceeeeEEcC-CCEEEE-Ee
Confidence 88 777766665555666677765 44 46667788999999998 88777766 3455667777765 666444 44
Q ss_pred cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEcCCCCCCC
Q 019117 195 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQS 273 (346)
Q Consensus 195 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~ 273 (346)
+.|..+| .+.. ...........+.++..+ ...+..++.++.|..+|... +
T Consensus 195 --~~l~~~d-~~g~-----------------------~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g-~-- 245 (330)
T 3hxj_A 195 --DKVYAIN-PDGT-----------------------EKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDG-T-- 245 (330)
T ss_dssp --SSEEEEC-TTSC-----------------------EEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECTTS-C--
T ss_pred --CEEEEEC-CCCc-----------------------EEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECCCC-C--
Confidence 7889998 4422 122222233445566666 33677777788888887533 2
Q ss_pred CCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeee-EEEEEecCCCC
Q 019117 274 PGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICF-SLHVKYNPQSV 345 (346)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~spdg~ 345 (346)
.+..+......+..+.+.+++ .|..++.+|.|..+|. +++.......... +.++...++|+
T Consensus 246 -------~~~~~~~~~~~~~~~~~~~~g---~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~ 307 (330)
T 3hxj_A 246 -------EKWRFKTGKRIESSPVIGNTD---TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT 307 (330)
T ss_dssp -------EEEEEECSSCCCSCCEECTTS---CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC
T ss_pred -------EeEEeeCCCCccccceEcCCC---eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE
Confidence 222333222233344555454 5777888888999995 6665544444322 33444445543
No 238
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.11 E-value=2.9e-08 Score=89.32 Aligned_cols=214 Identities=13% Similarity=0.116 Sum_probs=128.7
Q ss_pred EEEEEeccCceeeeEeeeecCCC-------------------------ccceEEEEEEEcCCCCcEEEEeecCCe-----
Q 019117 60 VTVYQCLEGGVIAALQSYVDEDK-------------------------EESFYTVSWACNVDGIPFLVAGGINGI----- 109 (346)
Q Consensus 60 v~i~~~~~~~~~~~~~~~~~~~~-------------------------~~~v~~~~~~~~~~~~~~l~~~~~dg~----- 109 (346)
|..||..+++.+..+........ ...++ ...++++++. +++.+..++.
T Consensus 185 v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w-~~~~~d~~~~-~vy~~~~~g~~w~~~ 262 (689)
T 1yiq_A 185 VTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAW-DSFAYDPELN-LLYIGVGNGSLWDPK 262 (689)
T ss_dssp EEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCC-SCEEEETTTT-EEEEECCCEESSCHH
T ss_pred EEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccc-cceeEcCCCC-EEEEeCCCCCccccC
Confidence 99999999998776653110000 00111 1234457777 7888877763
Q ss_pred --------------EEEEEccCcceeeeecc--CC-------CceEEEEEeCCCCc---eEEEeeCCCCEEEEecCCCee
Q 019117 110 --------------IRVIDVSNEKLHKSFVG--HG-------DSINEIRTQPLKPS---LVVSASKDESVRLWNVQTGIC 163 (346)
Q Consensus 110 --------------i~iwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~~---~l~s~~~d~~i~iwd~~~~~~ 163 (346)
|..+|.++++.+..++. |. .++....... ++. .++.++.+|.++++|.++|+.
T Consensus 263 ~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~ 341 (689)
T 1yiq_A 263 WRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-DGKPRKVLMQAPKNGFFYVIDRATGEL 341 (689)
T ss_dssp HHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc-CCcEEEEEEEECCCCeEEEEECCCCCE
Confidence 99999999999887764 21 1222222222 343 788999999999999999998
Q ss_pred EEEecccC-------------------------CCCc-----------ceEEEEecCCCCcEEEEEec------------
Q 019117 164 ILIFAGAG-------------------------GHRN-----------EVLSVDFHPSDIYRIASCGM------------ 195 (346)
Q Consensus 164 ~~~~~~~~-------------------------~~~~-----------~v~~~~~~~~~~~~l~s~~~------------ 195 (346)
+....... .... .-..++++| +..++++...
T Consensus 342 l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~ 420 (689)
T 1yiq_A 342 LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP-DTGLVYIPAHIMSAYYEHIPEA 420 (689)
T ss_dssp EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET-TTTEEEEEEEECCEEEECCSSC
T ss_pred eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC-CCCEEEEeccccceeeeecccc
Confidence 85443110 0000 011267888 6566666533
Q ss_pred ---------------------------------CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccc
Q 019117 196 ---------------------------------DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 242 (346)
Q Consensus 196 ---------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (346)
+|.|..||+.+.+ .+.....+...
T Consensus 421 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~-----------------------~~W~~~~~~~~ 477 (689)
T 1yiq_A 421 PKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ-----------------------AAWEVPYVTIF 477 (689)
T ss_dssp CCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE-----------------------EEEEEEESSSC
T ss_pred ccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC-----------------------eEeEccCCCCc
Confidence 2556777776632 23333333221
Q ss_pred eE-EEEecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcC-eeEEEEeecCCcceEEEEc
Q 019117 243 VD-CNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD-IWFIKFSCDFHYNAAAIGN 310 (346)
Q Consensus 243 i~-~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~~~l~~~~ 310 (346)
.. .+.-.+.+++.++.|+.++.||.++++ .+.++..+.+. ..-+.|..+|+ .++++.+
T Consensus 478 ~~g~~~tagglvf~gt~dg~l~a~D~~tG~---------~lw~~~~~~~~~~~p~ty~~~G~-qyv~~~~ 537 (689)
T 1yiq_A 478 NGGTLSTAGNLVFEGSADGRVIAYAADTGE---------KLWEQPAASGVMAAPVTYSVDGE-QYVTFMA 537 (689)
T ss_dssp CCCEEEETTTEEEEECTTSEEEEEETTTCC---------EEEEEECSSCCCSCCEEEEETTE-EEEEEEE
T ss_pred cCccceECCCEEEEECCCCcEEEEECCCCc---------cceeeeCCCCcccCceEEEECCE-EEEEEEe
Confidence 11 222238899999999999999999998 55555543222 23467788885 4665543
No 239
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.10 E-value=4.2e-08 Score=75.59 Aligned_cols=196 Identities=16% Similarity=0.178 Sum_probs=115.6
Q ss_pred CccceEEEEEEEcCCCCcEEEEeecCC--eEEEEEccCcceeeeeccCCCc-eEEEEEeCCCCceEEEeeCCCCEEEEec
Q 019117 82 KEESFYTVSWACNVDGIPFLVAGGING--IIRVIDVSNEKLHKSFVGHGDS-INEIRTQPLKPSLVVSASKDESVRLWNV 158 (346)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~~d~~i~iwd~ 158 (346)
|+..-..-.+.++ ++. ++.+.+.+| .|+++|+++++.+..+.-.... -..++.. ++.+.+..-.++.+.++|.
T Consensus 39 hd~~~ftqGL~~~-~~~-LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~ 114 (262)
T 3nol_A 39 HDTKAFTEGFFYR-NGY-FYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNI 114 (262)
T ss_dssp CCTTCEEEEEEEE-TTE-EEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEET
T ss_pred CCCCcccceEEEE-CCE-EEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEEC
Confidence 3333322333444 565 777777766 8999999999988887643322 1335554 3455556667899999999
Q ss_pred CCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee
Q 019117 159 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 238 (346)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (346)
.+.+.+.++.. ...-..+++ ++..|+.+..++.|.++|..+++..... ....
T Consensus 115 ~t~~~~~ti~~----~~eG~glt~---dg~~L~~SdGs~~i~~iDp~T~~v~~~I---------------------~V~~ 166 (262)
T 3nol_A 115 RNLRQVRSFNY----DGEGWGLTH---NDQYLIMSDGTPVLRFLDPESLTPVRTI---------------------TVTA 166 (262)
T ss_dssp TTCCEEEEEEC----SSCCCCEEE---CSSCEEECCSSSEEEEECTTTCSEEEEE---------------------ECEE
T ss_pred ccCcEEEEEEC----CCCceEEec---CCCEEEEECCCCeEEEEcCCCCeEEEEE---------------------Eecc
Confidence 99999999973 222234443 3444555455788999999884421111 1111
Q ss_pred cc---cceEEEEecCCEEEEEe-ecCeEEEEcCCCCCCCCCCccccccccc---cCCCcCeeEEEEeecCCcceEEEEc
Q 019117 239 HS---NYVDCNRWLGDFILSKS-VDNEIVLWEPKMKEQSPGEGTADILQKY---PVPECDIWFIKFSCDFHYNAAAIGN 310 (346)
Q Consensus 239 ~~---~~i~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~~~l~~~~ 310 (346)
.. ..+..+.|.+..+.+.. .++.|.+.|..+++.........+.... .........|+|+|+++ +++++|-
T Consensus 167 ~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~-~lfVTGK 244 (262)
T 3nol_A 167 HGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH-RLFVTGK 244 (262)
T ss_dssp TTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT-EEEEEET
T ss_pred CCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCC-EEEEECC
Confidence 11 23344566533444444 5889999999998732211111111110 11124568899999885 4556553
No 240
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.10 E-value=1.1e-08 Score=83.67 Aligned_cols=216 Identities=13% Similarity=0.028 Sum_probs=133.4
Q ss_pred EEEEEc-CCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCC
Q 019117 51 VFATVG-GNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD 129 (346)
Q Consensus 51 ~la~~~-~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 129 (346)
.+..++ .+++..+|.. ++....... ....+..+.. .+++. +..++.++.|..+|.. ++....+.....
T Consensus 109 ~l~v~t~~~~l~~~d~~-g~~~~~~~~-----~~~~~~~~~~--~~~g~--l~vgt~~~~l~~~d~~-g~~~~~~~~~~~ 177 (330)
T 3hxj_A 109 ILYVTSMDGHLYAINTD-GTEKWRFKT-----KKAIYATPIV--SEDGT--IYVGSNDNYLYAINPD-GTEKWRFKTNDA 177 (330)
T ss_dssp EEEEECTTSEEEEECTT-SCEEEEEEC-----SSCCCSCCEE--CTTSC--EEEECTTSEEEEECTT-SCEEEEEECSSC
T ss_pred EEEEEecCCEEEEEcCC-CCEEEEEcC-----CCceeeeeEE--cCCCE--EEEEcCCCEEEEECCC-CCEeEEEecCCC
Confidence 344454 4459999976 665444332 1222222322 35665 6667778999999988 877776665566
Q ss_pred ceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccce
Q 019117 130 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT 209 (346)
Q Consensus 130 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 209 (346)
.+.++...+ ++.++ .++ +.|..+| .+++.+..+. .....+.++...+ ++. +..++.++.|..+|... .
T Consensus 178 ~~~~~~~d~-~g~l~-v~t--~~l~~~d-~~g~~~~~~~---~~~~~~~~~~~~~-~g~-l~v~t~~~gl~~~~~~g-~- 245 (330)
T 3hxj_A 178 ITSAASIGK-DGTIY-FGS--DKVYAIN-PDGTEKWNFY---AGYWTVTRPAISE-DGT-IYVTSLDGHLYAINPDG-T- 245 (330)
T ss_dssp CCSCCEECT-TCCEE-EES--SSEEEEC-TTSCEEEEEC---CSSCCCSCCEECT-TSC-EEEEETTTEEEEECTTS-C-
T ss_pred ceeeeEEcC-CCEEE-EEe--CEEEEEC-CCCcEEEEEc---cCCcceeceEECC-CCe-EEEEcCCCeEEEECCCC-C-
Confidence 677777766 55544 444 7899999 7777777665 3446678888886 555 55566778888887533 1
Q ss_pred eeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCC
Q 019117 210 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP 288 (346)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 288 (346)
.+.........+.++... +..|..++.++.|..+|. +++ .+..+...
T Consensus 246 ----------------------~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~---------~~~~~~~~ 293 (330)
T 3hxj_A 246 ----------------------EKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGT---------EKWNFETG 293 (330)
T ss_dssp ----------------------EEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSC---------EEEEEECS
T ss_pred ----------------------EeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCc---------EEEEEEcC
Confidence 111222222222233334 567888888889999996 444 23333334
Q ss_pred CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 289 ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 289 ~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
...+.++...+++ .|..++.+|.+++...+..+
T Consensus 294 ~~~~~~~~~d~~g---~l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 294 SWIIATPVIDENG---TIYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp SCCCSCCEECTTC---CEEEECTTSCEEEEEC----
T ss_pred CccccceEEcCCC---EEEEEcCCCeEEEEeccccc
Confidence 4556667776776 47778999999998776543
No 241
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.08 E-value=5.1e-08 Score=75.11 Aligned_cols=182 Identities=9% Similarity=0.024 Sum_probs=122.4
Q ss_pred ceeeeeccCCC--ceEEEEEeCCCCceEEEeeCCC--CEEEEecCCCeeEEEecccCCCCcce--EEEEecCCCCcEEEE
Q 019117 119 KLHKSFVGHGD--SINEIRTQPLKPSLVVSASKDE--SVRLWNVQTGICILIFAGAGGHRNEV--LSVDFHPSDIYRIAS 192 (346)
Q Consensus 119 ~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~s 192 (346)
+.+.+++ |.. ....+.|+ ++.++.+.+.+| .|+++|+.+++.+..+.. .... -.++.. +..+.+.
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l----~~~~FgeGit~~--g~~ly~l 102 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL----GKRYFGEGISDW--KDKIVGL 102 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC----CTTCCEEEEEEE--TTEEEEE
T ss_pred EEEEEec-CCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEec----CCccceeEEEEe--CCEEEEE
Confidence 3455664 543 34788888 457777777766 899999999999988862 2233 345554 4555555
Q ss_pred EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCC
Q 019117 193 CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQ 272 (346)
Q Consensus 193 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 272 (346)
.-.++.+.+||..+.+ .+.++.... .-..+++.++.|+.+..++.|.++|..+.+
T Consensus 103 tw~~~~v~v~D~~t~~-----------------------~~~ti~~~~-eG~glt~dg~~L~~SdGs~~i~~iDp~T~~- 157 (262)
T 3nol_A 103 TWKNGLGFVWNIRNLR-----------------------QVRSFNYDG-EGWGLTHNDQYLIMSDGTPVLRFLDPESLT- 157 (262)
T ss_dssp ESSSSEEEEEETTTCC-----------------------EEEEEECSS-CCCCEEECSSCEEECCSSSEEEEECTTTCS-
T ss_pred EeeCCEEEEEECccCc-----------------------EEEEEECCC-CceEEecCCCEEEEECCCCeEEEEcCCCCe-
Confidence 5668899999998843 233333222 223555667766666668899999999876
Q ss_pred CCCCccccccccccCC-----CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeee-------------ee
Q 019117 273 SPGEGTADILQKYPVP-----ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLI-------------CF 334 (346)
Q Consensus 273 ~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------~~ 334 (346)
.+.++... -..+..+.|. ++ .+.+..-.++.|.+.|.++++.+..+.+. ..
T Consensus 158 --------v~~~I~V~~~g~~~~~lNELe~~-~G--~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~v 226 (262)
T 3nol_A 158 --------PVRTITVTAHGEELPELNELEWV-DG--EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDV 226 (262)
T ss_dssp --------EEEEEECEETTEECCCEEEEEEE-TT--EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCC
T ss_pred --------EEEEEEeccCCccccccceeEEE-CC--EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCc
Confidence 33333321 1334557776 66 56677767889999999999977766653 13
Q ss_pred EEEEEecCCCC
Q 019117 335 SLHVKYNPQSV 345 (346)
Q Consensus 335 ~~~~~~spdg~ 345 (346)
.+.|+|+|+++
T Consensus 227 lNGIA~dp~~~ 237 (262)
T 3nol_A 227 LNGIAWDKEHH 237 (262)
T ss_dssp EEEEEEETTTT
T ss_pred eEEEEEcCCCC
Confidence 57899999864
No 242
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=99.04 E-value=1.9e-06 Score=72.03 Aligned_cols=235 Identities=9% Similarity=-0.062 Sum_probs=140.4
Q ss_pred cEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCC
Q 019117 50 NVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD 129 (346)
Q Consensus 50 ~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 129 (346)
.+|+.+....|+.+++........+. .......++|. +.+..++++-...+.|..++++.......+.....
T Consensus 88 ~~l~~~~~~~I~~i~~~~~~~~~~~~------~~~~~~gl~~d--~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~ 159 (386)
T 3v65_B 88 PVLLFANRIDIRQVLPHRSEYTLLLN------NLENAIALDFH--HRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE 159 (386)
T ss_dssp CEEEEECBSCEEEECTTSCCCEEEEC------SCSCEEEEEEE--TTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCS
T ss_pred ceeEeecCccceeeccCCCcEEEEec------CCCccEEEEEe--cCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCC
Confidence 45556666668888876544433332 22334456555 65552555656678999999876654443433334
Q ss_pred ceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecC-CeEEEEEccccc
Q 019117 130 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-NTVKIWSMKEFW 208 (346)
Q Consensus 130 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~ 208 (346)
....+++.+.++.++++-...+.|.+.++........+. ........++++|.++.++++-... +.|..+++....
T Consensus 160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~---~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~ 236 (386)
T 3v65_B 160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW---QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 236 (386)
T ss_dssp CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC---SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec---CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence 557888887456666676677889998886443333332 2345678999998556666665555 678888876511
Q ss_pred eeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CC-EEEEEeecCeEEEEcCCCCCCCCCCccccccccc
Q 019117 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY 285 (346)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 285 (346)
........-.....|+++ +. +.++-...+.|..+|+..... ...+
T Consensus 237 -----------------------~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~---------~~~~ 284 (386)
T 3v65_B 237 -----------------------RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR---------KAVI 284 (386)
T ss_dssp -----------------------CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC---------EEEE
T ss_pred -----------------------cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee---------EEEE
Confidence 011111112335667776 44 445555678899999875331 1111
Q ss_pred cCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee
Q 019117 286 PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR 330 (346)
Q Consensus 286 ~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (346)
.........+++ ..+ .++.+-...+.|..++..+++....+.
T Consensus 285 ~~~~~~P~giav-~~~--~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 285 SQGLPHPFAITV-FED--SLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp CSSCSSEEEEEE-ETT--EEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred ECCCCCceEEEE-ECC--EEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 112335677788 333 467777788899999977776555443
No 243
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.04 E-value=1.8e-07 Score=72.03 Aligned_cols=183 Identities=7% Similarity=-0.065 Sum_probs=126.0
Q ss_pred ceeeeeccCCC--ceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecC
Q 019117 119 KLHKSFVGHGD--SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 196 (346)
Q Consensus 119 ~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 196 (346)
+.+.+++ |.. ....+.|+ ++.++.+.+.+|.|+++|+.+++.+..+ . .....--.+++. +..+.+..-.+
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l--~~~~FgeGit~~--g~~Ly~ltw~~ 115 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-R--LGNIFAEGLASD--GERLYQLTWTE 115 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-E--CTTCCEEEEEEC--SSCEEEEESSS
T ss_pred EEEEEEc-CCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-C--CCCcceeEEEEe--CCEEEEEEccC
Confidence 4455564 433 34788887 4678888888999999999999988877 2 222222346665 45666666678
Q ss_pred CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCCC
Q 019117 197 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGE 276 (346)
Q Consensus 197 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 276 (346)
+.+.+||..+++ .+.++... ..-..+++.++.|+.+..++.|.++|..+.+
T Consensus 116 ~~v~V~D~~Tl~-----------------------~~~ti~~~-~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~----- 166 (268)
T 3nok_A 116 GLLFTWSGMPPQ-----------------------RERTTRYS-GEGWGLCYWNGKLVRSDGGTMLTFHEPDGFA----- 166 (268)
T ss_dssp CEEEEEETTTTE-----------------------EEEEEECS-SCCCCEEEETTEEEEECSSSEEEEECTTTCC-----
T ss_pred CEEEEEECCcCc-----------------------EEEEEeCC-CceeEEecCCCEEEEECCCCEEEEEcCCCCe-----
Confidence 999999999843 23333322 2224566678877777779999999999876
Q ss_pred ccccccccccCC-----CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee--------------eEEE
Q 019117 277 GTADILQKYPVP-----ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC--------------FSLH 337 (346)
Q Consensus 277 ~~~~~~~~~~~~-----~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------------~~~~ 337 (346)
.+.++... -..+..+.|. ++ .+.+..-.++.|.+.|.++++.+..+.+.+ ..+.
T Consensus 167 ----v~~~I~V~~~g~~v~~lNeLe~~-dG--~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNG 239 (268)
T 3nok_A 167 ----LVGAVQVKLRGQPVELINELECA-NG--VIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNG 239 (268)
T ss_dssp ----EEEEEECEETTEECCCEEEEEEE-TT--EEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEE
T ss_pred ----EEEEEEeCCCCcccccccccEEe-CC--EEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEE
Confidence 33333321 1244667776 66 566777678899999999999877776542 3578
Q ss_pred EEecCCCC
Q 019117 338 VKYNPQSV 345 (346)
Q Consensus 338 ~~~spdg~ 345 (346)
|+|+|+++
T Consensus 240 IA~dp~~~ 247 (268)
T 3nok_A 240 IAVEPGSG 247 (268)
T ss_dssp EEECTTTC
T ss_pred EEEcCCCC
Confidence 99999865
No 244
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.04 E-value=1.7e-07 Score=72.26 Aligned_cols=181 Identities=9% Similarity=0.026 Sum_probs=112.9
Q ss_pred CCcEEEEeecCCeEEEEEccCcceeeeeccCCC-ceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCc
Q 019117 97 GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD-SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN 175 (346)
Q Consensus 97 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 175 (346)
+. ++.+.+.+|.|+++|+++++.+..+ -... .-..+++. ++.+.+..-.++.+.++|..+.+.+.++.. ..
T Consensus 65 ~~-Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~----~~ 136 (268)
T 3nok_A 65 GH-FFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTTRY----SG 136 (268)
T ss_dssp TE-EEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEEEC----SS
T ss_pred CE-EEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEEeC----CC
Confidence 44 7888888899999999999988777 2222 12345554 455666666789999999999999999973 23
Q ss_pred ceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc---cceEEEEecCCE
Q 019117 176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS---NYVDCNRWLGDF 252 (346)
Q Consensus 176 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~ 252 (346)
.-..+++ ++..|+.+..++.|.++|..+++..... ....+. ..+..+.|.+..
T Consensus 137 eGwGLt~---Dg~~L~vSdGs~~l~~iDp~T~~v~~~I---------------------~V~~~g~~v~~lNeLe~~dG~ 192 (268)
T 3nok_A 137 EGWGLCY---WNGKLVRSDGGTMLTFHEPDGFALVGAV---------------------QVKLRGQPVELINELECANGV 192 (268)
T ss_dssp CCCCEEE---ETTEEEEECSSSEEEEECTTTCCEEEEE---------------------ECEETTEECCCEEEEEEETTE
T ss_pred ceeEEec---CCCEEEEECCCCEEEEEcCCCCeEEEEE---------------------EeCCCCcccccccccEEeCCE
Confidence 3345554 3445555556889999999884421111 111122 234556666334
Q ss_pred EEEEe-ecCeEEEEcCCCCCCCCCCcccccccc----ccCCCcCeeEEEEeecCCcceEEEEc
Q 019117 253 ILSKS-VDNEIVLWEPKMKEQSPGEGTADILQK----YPVPECDIWFIKFSCDFHYNAAAIGN 310 (346)
Q Consensus 253 l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~~~~~~~l~~~~ 310 (346)
|.+.. .++.|.+.|..+++.........+... ..........|+++|+++ +++++|-
T Consensus 193 lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~-rlfVTGK 254 (268)
T 3nok_A 193 IYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSG-RIFMTGK 254 (268)
T ss_dssp EEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTC-CEEEEET
T ss_pred EEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCC-EEEEeCC
Confidence 54444 578999999999873221111111110 011224678899999885 5666663
No 245
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.02 E-value=2.7e-07 Score=70.48 Aligned_cols=190 Identities=9% Similarity=0.042 Sum_probs=114.7
Q ss_pred eEEEEEEEcCCCCcEEEEeecC--CeEEEEEccCcceeeeeccCCCc-eEEEEEeCCCCceEEEeeCCCCEEEEecCCCe
Q 019117 86 FYTVSWACNVDGIPFLVAGGIN--GIIRVIDVSNEKLHKSFVGHGDS-INEIRTQPLKPSLVVSASKDESVRLWNVQTGI 162 (346)
Q Consensus 86 v~~~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 162 (346)
...+.|. . +. ++.+.+.+ ..|+.+|+.+++.+..+.-.... -..+++. ++.+....-.++.+.++|..+.+
T Consensus 23 tqGL~~~--~-~~-LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 23 TEGLFYL--R-GH-LYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp EEEEEEE--T-TE-EEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred cccEEEE--C-CE-EEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 3445553 4 44 66666665 48999999999988877643321 2344554 45566666778999999999999
Q ss_pred eEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecc--
Q 019117 163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS-- 240 (346)
Q Consensus 163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 240 (346)
.+.++.. ...-..++.. ++.++++ ..++.|.++|..+++..... ....+.
T Consensus 97 ~~~ti~~----~~~Gwglt~d--g~~L~vS-dgs~~l~~iDp~t~~~~~~I---------------------~V~~~g~~ 148 (243)
T 3mbr_X 97 PRARFRY----PGEGWALTSD--DSHLYMS-DGTAVIRKLDPDTLQQVGSI---------------------KVTAGGRP 148 (243)
T ss_dssp EEEEEEC----SSCCCEEEEC--SSCEEEE-CSSSEEEEECTTTCCEEEEE---------------------ECEETTEE
T ss_pred EEEEEeC----CCCceEEeeC--CCEEEEE-CCCCeEEEEeCCCCeEEEEE---------------------EEccCCcc
Confidence 9999973 2333455532 4454454 55889999999884421111 111111
Q ss_pred -cceEEEEecCCEEEEEe-ecCeEEEEcCCCCCCCCCCccccccccc----cCCCcCeeEEEEeecCCcceEEEEc
Q 019117 241 -NYVDCNRWLGDFILSKS-VDNEIVLWEPKMKEQSPGEGTADILQKY----PVPECDIWFIKFSCDFHYNAAAIGN 310 (346)
Q Consensus 241 -~~i~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~~~l~~~~ 310 (346)
..+..+.+.+..+.+.. .+..|.+.|..+++.........+.... .......+.|+++|+++ +++++|-
T Consensus 149 ~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~-~lfVTGK 223 (243)
T 3mbr_X 149 LDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD-RLFVTGK 223 (243)
T ss_dssp CCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT-EEEEEET
T ss_pred cccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCC-EEEEECC
Confidence 23455666644444444 5789999999998742211111111111 11224678899999885 5666664
No 246
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.02 E-value=2.3e-07 Score=79.97 Aligned_cols=261 Identities=7% Similarity=0.043 Sum_probs=154.4
Q ss_pred EEEEcCCc-EEEEEeccCceeeeEeeeecCC----------------------------C------ccceEEEEEEE---
Q 019117 52 FATVGGNR-VTVYQCLEGGVIAALQSYVDED----------------------------K------EESFYTVSWAC--- 93 (346)
Q Consensus 52 la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~----------------------------~------~~~v~~~~~~~--- 93 (346)
|.+|+..+ ++|+-+-+++.++.+..|.... + .+......+++
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 45555555 8999888888887777654311 0 11122244443
Q ss_pred cCCCCcEEEEeecCCeEEEEEccCcceeeeecc-CCCceEEEEE-e-CCCCceEEEee------------------CCCC
Q 019117 94 NVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG-HGDSINEIRT-Q-PLKPSLVVSAS------------------KDES 152 (346)
Q Consensus 94 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~~l~s~~------------------~d~~ 152 (346)
.+||+.+++....++.|.+.|+++.+..+.+.- .......+++ . | ++.++++++ .++.
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCce
Confidence 247883444445567899999999997774432 2345788887 4 8 677777764 3457
Q ss_pred EEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecC---------------CeEEEEEccccceeeeec-ee
Q 019117 153 VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD---------------NTVKIWSMKEFWTYVEKS-FT 216 (346)
Q Consensus 153 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---------------~~i~iwd~~~~~~~~~~~-~~ 216 (346)
+.+.|..+.+....+.. .+....++++| ++.++++.+.+ ..|.+.|........... ..
T Consensus 177 vtvID~~t~~v~~qI~V----gg~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~ 251 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLV----SGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ 251 (595)
T ss_dssp EEEEETTTTEEEEEEEE----SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred EEEEECCCCeEEEEEEe----CCCccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence 99999999998888862 23567788999 77777777655 347777776532211000 00
Q ss_pred ecCCCCCCCCccc-eec-eEEEeecccceEEEEec--CCEEEEEe-ecCeEEEEcCCCCCC---CCCCccccccccccCC
Q 019117 217 WTDLPSKFPTKYV-QFP-VFIASVHSNYVDCNRWL--GDFILSKS-VDNEIVLWEPKMKEQ---SPGEGTADILQKYPVP 288 (346)
Q Consensus 217 ~~~~~~~~~~~~~-~~~-~~~~~~~~~~i~~~~~~--~~~l~~~~-~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~ 288 (346)
+...-.-...... ... +..+.. .....++.++ |+++++++ .+.+|.++|+.+.+. .............. -
T Consensus 252 ~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-v 329 (595)
T 1fwx_A 252 ELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-L 329 (595)
T ss_dssp EETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-C
T ss_pred EECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-C
Confidence 0000000000000 011 112221 2234456666 77666555 589999999986521 00011111222222 2
Q ss_pred CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117 289 ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (346)
Q Consensus 289 ~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~ 322 (346)
......++|+++| ...++.-.|+.|.+||+.+
T Consensus 330 G~gP~h~aF~~dG--~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 330 GLGPLHTAFDGRG--NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CSCEEEEEECTTS--EEEEEETTTTEEEEEEHHH
T ss_pred CCCcceEEECCCC--eEEEEEecCCcEEEEEhhH
Confidence 3467889999999 5777888999999999987
No 247
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.00 E-value=5e-08 Score=83.94 Aligned_cols=259 Identities=11% Similarity=0.045 Sum_probs=151.0
Q ss_pred CccEEEEEcCCc--EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee------------------cC
Q 019117 48 YFNVFATVGGNR--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG------------------IN 107 (346)
Q Consensus 48 ~~~~la~~~~~~--v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~------------------~d 107 (346)
||+++..+..++ |.+.|+.+.+..+.+... .......+++.--|+++ ++++++ .+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip----~g~~phg~~~~~~p~~~-~v~~~~~~~~p~~~dg~~l~~~~~~~ 174 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIP----NAKGIHGLRPQKWPRSN-YVFCNGEDETPLVNDGTNMEDVANYV 174 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECS----SCCSEEEEEECCSSBCS-EEEEEECSCEESSCSSSSTTCGGGEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCC----CCCCCcceeeeecCCCc-EEEEecccccccCCCCcccccccccC
Confidence 566666666554 999999998887766321 22344445543127888 777763 34
Q ss_pred CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCC------------------------------------
Q 019117 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE------------------------------------ 151 (346)
Q Consensus 108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~------------------------------------ 151 (346)
+.+.+.|.++.+....+.--. ....++++| ++.++++.+.+.
T Consensus 175 ~~vtvID~~t~~v~~qI~Vgg-~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~ 252 (595)
T 1fwx_A 175 NVFTAVDADKWEVAWQVLVSG-NLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE 252 (595)
T ss_dssp EEEEEEETTTTEEEEEEEESS-CCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred ceEEEEECCCCeEEEEEEeCC-CccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence 689999999988888776322 456788999 677777776443
Q ss_pred --CEEEEecCC--Cee-EEEecccCCCCcceEEEEecCCCCcEE-EEEecCCeEEEEEccccceeeeeceeecCCCCCCC
Q 019117 152 --SVRLWNVQT--GIC-ILIFAGAGGHRNEVLSVDFHPSDIYRI-ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP 225 (346)
Q Consensus 152 --~i~iwd~~~--~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 225 (346)
.|.+.|.++ ++. +..+. -.....++.++| +++++ +++..+.+|.++|+.+.+.......
T Consensus 253 i~~V~VID~~~~~~~~~~~~Ip----vg~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l---------- 317 (595)
T 1fwx_A 253 LNGVKVVDGRKEASSLFTRYIP----IANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENA---------- 317 (595)
T ss_dssp ETTEEEEECSGGGCCSSEEEEE----EESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCC----------
T ss_pred ECcEEEEeCcccCCceeEEEEe----cCCCceEEEEcC-CCCEEEEeCCCCCeEEEEECccccccccccc----------
Confidence 367777776 444 44443 334567899999 66555 4555678999999997431100000
Q ss_pred CccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCC-CCccccccccccCCCcC-----eeEEEE
Q 019117 226 TKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSP-GEGTADILQKYPVPECD-----IWFIKF 297 (346)
Q Consensus 226 ~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~-----v~~~~~ 297 (346)
.....+.....-......++|+ |...++.-.|+.|.+||+....... .......+.++..|-.+ -..+.+
T Consensus 318 --~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~ 395 (595)
T 1fwx_A 318 --DPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETL 395 (595)
T ss_dssp --CGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTST
T ss_pred --CcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEe
Confidence 0001111111122345667777 6333445569999999987621000 00011244444444321 122356
Q ss_pred eecCCcceEEEEc---CCCc----------EEEEEcCCCCcceeeeee
Q 019117 298 SCDFHYNAAAIGN---REGK----------IFVWELQSSPPVLIARLI 332 (346)
Q Consensus 298 s~~~~~~~l~~~~---~dg~----------i~iwd~~~~~~~~~~~~~ 332 (346)
+||| ++|++.. .|.. -.++|+.+++........
T Consensus 396 ~~DG--k~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv~d~p 441 (595)
T 1fwx_A 396 DATN--DWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGP 441 (595)
T ss_dssp TCCS--SEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEEEE
T ss_pred CCCC--CEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEEEEEEc
Confidence 7899 5666653 2432 188999777655544433
No 248
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.99 E-value=3.1e-07 Score=82.58 Aligned_cols=225 Identities=12% Similarity=0.110 Sum_probs=136.8
Q ss_pred EEEEEeccCceeeeEeeeecCC--------------------------CccceEEEEEEEcCCCCcEEEEeecCC-----
Q 019117 60 VTVYQCLEGGVIAALQSYVDED--------------------------KEESFYTVSWACNVDGIPFLVAGGING----- 108 (346)
Q Consensus 60 v~i~~~~~~~~~~~~~~~~~~~--------------------------~~~~v~~~~~~~~~~~~~~l~~~~~dg----- 108 (346)
|+.||..+++.+..+....... ....+. ...++++++. .++.+..++
T Consensus 192 v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w-~~~~~d~~~~-~vy~~~~~~~~w~~ 269 (677)
T 1kb0_A 192 ITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMW-DSMTFDAELN-TMYVGTGNGSPWSH 269 (677)
T ss_dssp EEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCC-SCEEEETTTT-EEEEECCCEESSCH
T ss_pred EEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccc-cceeEcCCCC-EEEEECCCCccccC
Confidence 9999999999877665422110 000000 1234457777 777776553
Q ss_pred --------------eEEEEEccCcceeeeecc--CC-------CceEEEEEeCCCC---ceEEEeeCCCCEEEEecCCCe
Q 019117 109 --------------IIRVIDVSNEKLHKSFVG--HG-------DSINEIRTQPLKP---SLVVSASKDESVRLWNVQTGI 162 (346)
Q Consensus 109 --------------~i~iwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~ 162 (346)
.|..+|.++++.+..++. |. .....+.... ++ ..++.++.+|.|.++|..+|+
T Consensus 270 ~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~l~~lD~~tG~ 348 (677)
T 1kb0_A 270 KVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLDRTNGK 348 (677)
T ss_dssp HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred CCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc-CCcEeeEEEEECCCCEEEEEECCCCC
Confidence 599999999998887653 21 1222333333 45 688999999999999999999
Q ss_pred eEEEecccCC--------CCcce------------------------EEEEecCCCCcEEEEEecC--------------
Q 019117 163 CILIFAGAGG--------HRNEV------------------------LSVDFHPSDIYRIASCGMD-------------- 196 (346)
Q Consensus 163 ~~~~~~~~~~--------~~~~v------------------------~~~~~~~~~~~~l~s~~~d-------------- 196 (346)
.+..+..... ...++ ..++++| +..++++...+
T Consensus 349 ~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~g 427 (677)
T 1kb0_A 349 FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QTGLVYLPAQNVPVNLMDDKKWEFN 427 (677)
T ss_dssp EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TTTEEEEEEEECCCEEEECTTCCTT
T ss_pred EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-CCCEEEEeChhcceeeecccccccc
Confidence 9877652100 00011 1567888 66666665432
Q ss_pred -----------------------------CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEE--
Q 019117 197 -----------------------------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC-- 245 (346)
Q Consensus 197 -----------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-- 245 (346)
|.|..||+.+.+. +..... ...+..
T Consensus 428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~-----------------------~W~~~~-~~~~~~g~ 483 (677)
T 1kb0_A 428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA-----------------------AWSVEH-VSPWNGGT 483 (677)
T ss_dssp CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE-----------------------EEEEEE-SSSCCCCE
T ss_pred cccccccccccccccccccccccCCCCCccEEEEEeCCCCcE-----------------------EeecCC-CCCCcCcc
Confidence 5677777776332 222221 111221
Q ss_pred EEecCCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCC-cCeeEEEEeecCCcceEEEEcC-------------
Q 019117 246 NRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE-CDIWFIKFSCDFHYNAAAIGNR------------- 311 (346)
Q Consensus 246 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~l~~~~~------------- 311 (346)
+...+.+++.++.|+.+++||..+++ .+..+.... ....-+.+..+++ .++++.+.
T Consensus 484 ~~~~g~~v~~g~~dg~l~a~D~~tG~---------~lw~~~~~~~~~~~p~~y~~~G~-~~v~~~~G~~~~~~~~~~~~~ 553 (677)
T 1kb0_A 484 LTTAGNVVFQGTADGRLVAYHAATGE---------KLWEAPTGTGVVAAPSTYMVDGR-QYVSVAVGWGGVYGLAARATE 553 (677)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCC---------EEEEEECSSCCCSCCEEEEETTE-EEEEEEECCCHHHHHHCCSCS
T ss_pred eEeCCCEEEEECCCCcEEEEECCCCc---------eeeeeeCCCCcccCCEEEEeCCE-EEEEEeccCCccccccccccc
Confidence 22237788889999999999999988 555554332 2223456778885 35554322
Q ss_pred ---CCcEEEEEcCC
Q 019117 312 ---EGKIFVWELQS 322 (346)
Q Consensus 312 ---dg~i~iwd~~~ 322 (346)
.+.+..|.+..
T Consensus 554 ~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 554 RQGPGTVYTFVVGG 567 (677)
T ss_dssp CCCCCEEEEEEETC
T ss_pred cCCCCeEEEEeccc
Confidence 36777777763
No 249
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.98 E-value=3.8e-07 Score=69.71 Aligned_cols=182 Identities=10% Similarity=-0.039 Sum_probs=121.0
Q ss_pred ceeeeeccCC--CceEEEEEeCCCCceEEEeeCCC--CEEEEecCCCeeEEEecccCCCCcce--EEEEecCCCCcEEEE
Q 019117 119 KLHKSFVGHG--DSINEIRTQPLKPSLVVSASKDE--SVRLWNVQTGICILIFAGAGGHRNEV--LSVDFHPSDIYRIAS 192 (346)
Q Consensus 119 ~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~s 192 (346)
+.+.+++ |. .....+.|++ +.++.+.+.+| .|+.+|+.+++.+..+.. .... -.+++. ++.++..
T Consensus 10 ~v~~~~p-hd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l----~~~~fgeGi~~~--~~~ly~l 80 (243)
T 3mbr_X 10 RVVKRYP-HDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEV----PPPYFGAGIVAW--RDRLIQL 80 (243)
T ss_dssp EEEEEEE-CCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEEC----CTTCCEEEEEEE--TTEEEEE
T ss_pred EEEEEcC-CCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeC----CCCcceeEEEEe--CCEEEEE
Confidence 3455554 54 4566899986 56677777654 899999999999988863 2222 345554 4566666
Q ss_pred EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCC
Q 019117 193 CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQ 272 (346)
Q Consensus 193 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 272 (346)
.-.++.+.+||..+++ .+.++.... .-..++..++.|+.+..++.|.++|..+.+
T Consensus 81 tw~~~~v~v~D~~tl~-----------------------~~~ti~~~~-~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~- 135 (243)
T 3mbr_X 81 TWRNHEGFVYDLATLT-----------------------PRARFRYPG-EGWALTSDDSHLYMSDGTAVIRKLDPDTLQ- 135 (243)
T ss_dssp ESSSSEEEEEETTTTE-----------------------EEEEEECSS-CCCEEEECSSCEEEECSSSEEEEECTTTCC-
T ss_pred EeeCCEEEEEECCcCc-----------------------EEEEEeCCC-CceEEeeCCCEEEEECCCCeEEEEeCCCCe-
Confidence 6678999999998843 233333222 224566666666666668999999999876
Q ss_pred CCCCccccccccccCC-----CcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee--------------
Q 019117 273 SPGEGTADILQKYPVP-----ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC-------------- 333 (346)
Q Consensus 273 ~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------- 333 (346)
.+.++... -..+..+.+. ++ .+.+..-.+..|.+.|.++++.+..+.+.+
T Consensus 136 --------~~~~I~V~~~g~~~~~lNeLe~~-~G--~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~ 204 (243)
T 3mbr_X 136 --------QVGSIKVTAGGRPLDNLNELEWV-NG--ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTND 204 (243)
T ss_dssp --------EEEEEECEETTEECCCEEEEEEE-TT--EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSS
T ss_pred --------EEEEEEEccCCcccccceeeEEe-CC--EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCC
Confidence 33333321 1244556655 55 566666678899999999999777666442
Q ss_pred eEEEEEecCCCC
Q 019117 334 FSLHVKYNPQSV 345 (346)
Q Consensus 334 ~~~~~~~spdg~ 345 (346)
..+.|+|+|+++
T Consensus 205 vlNGIA~d~~~~ 216 (243)
T 3mbr_X 205 VLNGIAFDAEHD 216 (243)
T ss_dssp CEEEEEEETTTT
T ss_pred ceEEEEEcCCCC
Confidence 357899999764
No 250
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.96 E-value=7.4e-06 Score=67.42 Aligned_cols=246 Identities=8% Similarity=-0.084 Sum_probs=143.8
Q ss_pred CCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117 33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (346)
Q Consensus 33 ~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 112 (346)
.+...|.+..+ ..+|+.+....|+..++........+. .......++|. +.+..++++-...+.|..
T Consensus 33 ~d~~~C~~~~~-----~~~ll~~~~~~I~~i~~~g~~~~~~~~------~~~~~~~l~~d--~~~~~ly~~D~~~~~I~r 99 (349)
T 3v64_C 33 PDRRSCKALGP-----EPVLLFANRIDIRQVLPHRSEYTLLLN------NLENAIALDFH--HRRELVFWSDVTLDRILR 99 (349)
T ss_dssp TTSSCEEESSS-----CCEEEEECBSCEEEECTTSCCEEEEEC------SCSCEEEEEEE--TTTTEEEEEETTTTEEEE
T ss_pred CCCCccccccc-----CceeEeecccceEEEeCCCCeeEEeec------CCCceEEEEEe--ccccEEEEEeccCCceEE
Confidence 34445655443 245555555668887765443322222 22234455555 655525555556789999
Q ss_pred EEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEE
Q 019117 113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS 192 (346)
Q Consensus 113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 192 (346)
++++.......+.........+++.+.++.++++-...+.|.+.++........+. ........++++|.++.++++
T Consensus 100 ~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~---~~l~~P~~iavdp~~g~ly~t 176 (349)
T 3v64_C 100 ANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW---QSLEKPRAIALHPMEGTIYWT 176 (349)
T ss_dssp EETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---TTCSCEEEEEEETTTTEEEEE
T ss_pred EecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe---CCCCCcceEEEecCcCeEEEe
Confidence 99876654443333334567889987456666776777889999987443333332 234567899999856666666
Q ss_pred EecC-CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEE-EEEeecCeEEEEcCC
Q 019117 193 CGMD-NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPK 268 (346)
Q Consensus 193 ~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~ 268 (346)
-... +.|..+++..... .......-.....++++ ++.| ++-...+.|..+|+.
T Consensus 177 d~~~~~~I~r~~~dG~~~-----------------------~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 177 DWGNTPRIEASSMDGSGR-----------------------RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp ECSSSCEEEEEETTSCSC-----------------------EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred ccCCCCEEEEEeCCCCCc-----------------------EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 5555 7888888765111 00001112234567776 4444 444556789999987
Q ss_pred CCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee
Q 019117 269 MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA 329 (346)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 329 (346)
.... ...+.........+++ .++ .++.+-...+.|..++..+++....+
T Consensus 234 G~~~---------~~~~~~~~~~P~giav-~~~--~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 234 GSHR---------KAVISQGLPHPFAITV-FED--SLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp SCSC---------EEEECSSCSSEEEEEE-ETT--EEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCce---------EEEEeCCCCCceEEEE-ECC--EEEEecCCCCeEEEEEccCCCccEEe
Confidence 5431 1111112335667787 344 56677777888999987677655444
No 251
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.95 E-value=1.8e-07 Score=84.04 Aligned_cols=153 Identities=12% Similarity=0.073 Sum_probs=95.4
Q ss_pred cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec------CCeEEEEEccCcceee
Q 019117 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI------NGIIRVIDVSNEKLHK 122 (346)
Q Consensus 50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~ 122 (346)
..++.++.++ |..+|..+++.+......... ....+...-.. .++ .++++.. +|.|..+|..+++.+.
T Consensus 118 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~-~~~~~~~~P~v--~~~--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 192 (668)
T 1kv9_A 118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPA-KPYSITGAPRV--VKG--KVIIGNGGAEYGVRGFVSAYDADTGKLAW 192 (668)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECSCTT-SSCBCCSCCEE--ETT--EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred CEEEEEcCCCEEEEEECCCCCEeeeeccCCCC-CcceecCCCEE--ECC--EEEEeCCCCCcCCCCEEEEEECCCCcEEE
Confidence 4555666555 999999999987776532110 00111100001 134 4555543 5899999999999887
Q ss_pred eeccCC-------------------------------CceEEEEEeCCCCceEEEeeCCC-------------------C
Q 019117 123 SFVGHG-------------------------------DSINEIRTQPLKPSLVVSASKDE-------------------S 152 (346)
Q Consensus 123 ~~~~~~-------------------------------~~v~~~~~~~~~~~~l~s~~~d~-------------------~ 152 (346)
.+.... .....+++.| ...+++.++.++ .
T Consensus 193 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~ 271 (668)
T 1kv9_A 193 RFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSS 271 (668)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred EecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence 764210 0112467888 667787777665 3
Q ss_pred EEEEecCCCeeEEEecccCCCC-------cceEEEEecCCCCc---EEEEEecCCeEEEEEcccccee
Q 019117 153 VRLWNVQTGICILIFAGAGGHR-------NEVLSVDFHPSDIY---RIASCGMDNTVKIWSMKEFWTY 210 (346)
Q Consensus 153 i~iwd~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~---~l~s~~~d~~i~iwd~~~~~~~ 210 (346)
|..+|.++++.+..++.. .|. .++....+.. ++. .++.++.+|.+.++|..+++..
T Consensus 272 v~AlD~~tG~~~W~~~~~-~~~~wd~~~~~~~~~~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 272 ILAIRPDTGKLAWHYQVT-PGDSWDFTATQQITLAELNI-DGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp EEEECTTTCCEEEEEESS-TTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred EEEEcCCCCceeeEeecC-CCccccccCCCCcEEEEecc-CCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 999999999999888742 121 2222222222 443 6889999999999999886654
No 252
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.89 E-value=1.7e-05 Score=73.00 Aligned_cols=272 Identities=7% Similarity=0.005 Sum_probs=155.4
Q ss_pred eEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEc
Q 019117 36 LYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDV 115 (346)
Q Consensus 36 v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 115 (346)
|.++...+ ++.+.+....+++..|+..+++...... ......|.++... ++|. |..|+.++-+.+||.
T Consensus 175 i~~i~~d~----~g~lwigt~~~Gl~~~~~~~~~~~~~~~----~~~~~~i~~i~~d--~~g~--lwigt~~~Gl~~~~~ 242 (795)
T 4a2l_A 175 IASTLYRQ----GDQIYIGTSTDGLYTYSITQKTFEKVIP----ILGTKQIQAILQQ--SPTR--IWVATEGAGLFLINP 242 (795)
T ss_dssp CEEEEEEE----TTEEEEEESSSCEEEEETTTCCEEECC--------CCCEEEEEEE--ETTE--EEEEEBSSCEEEEET
T ss_pred eEEEEECC----CCCEEEEECCCCEEEEeCCCCeEEEecC----CCCCCeeEEEEEc--CCCC--EEEEECCCCeEEEeC
Confidence 88888776 5677765545679999976654322111 1123456555543 6665 555554545889998
Q ss_pred cCcceeeeecc-------CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEeccc----CCCCcceEEEEecC
Q 019117 116 SNEKLHKSFVG-------HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA----GGHRNEVLSVDFHP 184 (346)
Q Consensus 116 ~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~ 184 (346)
.+++....... ....|.++...+ ++. |..|+.+ -|.+||..+++........ .-....|.++...+
T Consensus 243 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~ 319 (795)
T 4a2l_A 243 KTKEIKNYLHSPSNPKSISSNYIRSLAMDS-QNR-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDS 319 (795)
T ss_dssp TTTEEEEECCCTTCTTSCSCSBEEEEEECT-TSC-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECT
T ss_pred CCCeEEEeecCCCCccccCCCeEEEEEEcC-CCC-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeC
Confidence 77654332211 235689998887 554 4445555 5899998877644332110 11346799999986
Q ss_pred CCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEE
Q 019117 185 SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIV 263 (346)
Q Consensus 185 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~ 263 (346)
++. |..|+.++-|..|+.....-..... ... ........|.++..+ ...|..|+.++-|.
T Consensus 320 -~g~-lWigt~~~Gl~~~~~~~~~~~~~~~-----~~~------------~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~ 380 (795)
T 4a2l_A 320 -QGG-MWLGTYFGGLNYYHPIRNRFKNIRN-----IPY------------KNSLSDNVVSCIVEDKDKNLWIGTNDGGLN 380 (795)
T ss_dssp -TSC-EEEEESSSCEEEECGGGGSSEEECC-----CTT------------SSSCSCSSEEEEEECTTSCEEEEESSSCEE
T ss_pred -CcC-EEEEECCCCeEEeCCCcccceEEcC-----CCC------------CCCCCCCeeEEEEECCCCCEEEEECCCCeE
Confidence 665 5556777778888876521100000 000 001123457788777 45677788888899
Q ss_pred EEcCCCCCCCCCCccccccccc-cCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee-----eeeeEEE
Q 019117 264 LWEPKMKEQSPGEGTADILQKY-PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR-----LICFSLH 337 (346)
Q Consensus 264 iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~ 337 (346)
.|+..+++........ .... ......|.++...+++ .+|..|+.++-|..||..+++...... ....+.+
T Consensus 381 ~~~~~~~~~~~~~~~~--~~~~~~l~~~~v~~i~~d~~g--~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~ 456 (795)
T 4a2l_A 381 LYNPITQRFTSYTLQE--DESARGIGSNNIKAVYVDEKK--SLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYA 456 (795)
T ss_dssp EECTTTCCEEEECCC--------CCSCSCEEEEEEETTT--TEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEE
T ss_pred EEcCCCCcEEEEecCC--CCcccCCCCccEEEEEEcCCC--CEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEE
Confidence 9998765421000000 0000 1123568888877776 436677777779999988875332211 1234666
Q ss_pred EEecCCCC
Q 019117 338 VKYNPQSV 345 (346)
Q Consensus 338 ~~~spdg~ 345 (346)
+...++|+
T Consensus 457 i~~d~~g~ 464 (795)
T 4a2l_A 457 ILPDGEGN 464 (795)
T ss_dssp EEECSSSC
T ss_pred EEECCCCC
Confidence 66666654
No 253
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.89 E-value=1.5e-05 Score=64.73 Aligned_cols=234 Identities=6% Similarity=-0.053 Sum_probs=136.9
Q ss_pred EEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccC----cceeeeecc
Q 019117 51 VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN----EKLHKSFVG 126 (346)
Q Consensus 51 ~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~ 126 (346)
+|+.+..+.|+..++........+. .......++|. +.+..++++-..++.|..+++.. ......+..
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~------~~~~p~g~~~d--~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~ 74 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIP------NLRNVVALDTE--VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 74 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEEC------SCSSEEEEEEE--TTTTEEEEEETTTTEEEEEEC--------CEEEECS
T ss_pred EEEEECCCeEEEEECCCcceEehhc------CCCceEEEEEE--eCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC
Confidence 5666666779999987765544433 22334455555 65552555666678999999876 222222332
Q ss_pred CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecC-CeEEEEEcc
Q 019117 127 HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-NTVKIWSMK 205 (346)
Q Consensus 127 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~iwd~~ 205 (346)
.-.....+++.+.++.++++-...+.|.+.++........+. ........++++|.++.++++.... +.|...++.
T Consensus 75 ~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~---~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d 151 (316)
T 1ijq_A 75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 151 (316)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE---CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE---CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC
Confidence 234567889986455666666778899999987443332332 2345678999998455555554333 678888876
Q ss_pred ccceeeeeceeecCCCCCCCCccceeceEEE-eecccceEEEEec--CCEEE-EEeecCeEEEEcCCCCCCCCCCccccc
Q 019117 206 EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SVHSNYVDCNRWL--GDFIL-SKSVDNEIVLWEPKMKEQSPGEGTADI 281 (346)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~ 281 (346)
... ...+ ...-.....++++ ++.|. +-...+.|..+|++.... ..
T Consensus 152 G~~------------------------~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-------~~ 200 (316)
T 1ijq_A 152 GVD------------------------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KT 200 (316)
T ss_dssp SCC------------------------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EE
T ss_pred CCC------------------------eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-------EE
Confidence 411 1111 1122345677776 44554 444567899999875331 11
Q ss_pred cccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee
Q 019117 282 LQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA 329 (346)
Q Consensus 282 ~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 329 (346)
+............+++. .+ .++.+-...+.|..++..+++.+..+
T Consensus 201 ~~~~~~~~~~P~giav~-~~--~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 201 ILEDEKRLAHPFSLAVF-ED--KVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEECTTTTSSEEEEEEE-TT--EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EeecCCccCCcEEEEEE-CC--EEEEEECCCCeEEEEeCCCCcceEEE
Confidence 11111112345677774 33 56677777889999998777654443
No 254
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.84 E-value=2.4e-06 Score=75.21 Aligned_cols=154 Identities=12% Similarity=0.100 Sum_probs=90.2
Q ss_pred cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec------CCeEEEEEccCcceee
Q 019117 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI------NGIIRVIDVSNEKLHK 122 (346)
Q Consensus 50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~ 122 (346)
..++.++.++ +..+|..+++.+.....-... ....+...-.. .++ .++.++. ++.|..+|..+++.+.
T Consensus 116 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~-~~~~~~~~P~v--~~g--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 190 (571)
T 2ad6_A 116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPK-VGSTLTQAPFV--AKD--TVLMGCSGAELGVRGAVNAFDLKTGELKW 190 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCCGG-GTCBCCSCCEE--ETT--EEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred CEEEEEeCCCEEEEEECCCCCEEEEecCCCCC-ccceeccCCEE--ECC--EEEEEecCCccCCCCEEEEEECCCCcEEE
Confidence 4555555555 999999999887665431100 00011110011 134 4555544 7999999999999887
Q ss_pred eeccCCCc-------------------------------------e-EEEEEeCCCCceEEEeeCC--------------
Q 019117 123 SFVGHGDS-------------------------------------I-NEIRTQPLKPSLVVSASKD-------------- 150 (346)
Q Consensus 123 ~~~~~~~~-------------------------------------v-~~~~~~~~~~~~l~s~~~d-------------- 150 (346)
.+...... + ..+++.+ ....++.+..+
T Consensus 191 ~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~ 269 (571)
T 2ad6_A 191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGSGNPAPWNETMRPGDNK 269 (571)
T ss_dssp EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred EEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcC-CCCeEEEECCCCccccCCccCCCce
Confidence 66532110 0 1355666 44555555432
Q ss_pred --CCEEEEecCCCeeEEEecccC-------CCCcceEEEEecCCCC---cEEEEEecCCeEEEEEccccceee
Q 019117 151 --ESVRLWNVQTGICILIFAGAG-------GHRNEVLSVDFHPSDI---YRIASCGMDNTVKIWSMKEFWTYV 211 (346)
Q Consensus 151 --~~i~iwd~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~ 211 (346)
+.|..+|.++++.+..++... ....++. +...+ ++ ..++.++.+|.+.++|..+++...
T Consensus 270 y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~~w 340 (571)
T 2ad6_A 270 WTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPV-NGKMTPLLSHIDRNGILYTLNRENGNLIV 340 (571)
T ss_dssp TTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEE-TTEEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred eEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-Eeccc-CCcEEEEEEEeCCCcEEEEEECCCCCEEe
Confidence 359999999999988876321 0112222 22223 45 467788889999999998865533
No 255
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.79 E-value=2.9e-05 Score=71.55 Aligned_cols=272 Identities=11% Similarity=0.011 Sum_probs=154.5
Q ss_pred CCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeee---cCCCccceEEEEEEEcCCCCcEEEEeecCCe
Q 019117 33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYV---DEDKEESFYTVSWACNVDGIPFLVAGGINGI 109 (346)
Q Consensus 33 ~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 109 (346)
...|+++...+ +|.+.+... ++|.+|+..++.. ..+.... .......|.++.. +++|. |..|+.++-
T Consensus 262 ~~~i~~i~~d~----~g~lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~--D~~g~--lWigt~~~G 331 (795)
T 4a2l_A 262 SNYIRSLAMDS----QNRLWIGTF-NDLNIYHEGTDSF-ASYSSNPVENGSLSQRSVRSIFM--DSQGG--MWLGTYFGG 331 (795)
T ss_dssp CSBEEEEEECT----TSCEEEEES-SCEEEEETTTTEE-EEECCCTTSTTSCSSSCEEEEEE--CTTSC--EEEEESSSC
T ss_pred CCeEEEEEEcC----CCCEEEEeC-ChhheEcCCCCeE-EEEecCCCCCCCCCCCcEEEEEE--eCCcC--EEEEECCCC
Confidence 35688888765 566666554 4899999665543 2222110 0112345665554 47776 677777777
Q ss_pred EEEEEccCcceeeeec------cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEeccc-----CCCCcceE
Q 019117 110 IRVIDVSNEKLHKSFV------GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA-----GGHRNEVL 178 (346)
Q Consensus 110 i~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~v~ 178 (346)
|..|+..+++...... -....|.++...+ ++ .|..|+.++-|..||..+++........ .-....|.
T Consensus 332 l~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-~g-~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 409 (795)
T 4a2l_A 332 LNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-DK-NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIK 409 (795)
T ss_dssp EEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-TS-CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEE
T ss_pred eEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-CC-CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEE
Confidence 9999876654322111 0235688988876 44 4666777777999998876544332110 01246789
Q ss_pred EEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEe
Q 019117 179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKS 257 (346)
Q Consensus 179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~ 257 (346)
++...+ ++.+|..|+.++-|..||..+.+...... . . .......|.++..+ ...|..|+
T Consensus 410 ~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~~~-----~----------~----~~l~~~~v~~i~~d~~g~lwigt 469 (795)
T 4a2l_A 410 AVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENFNQ-----R----------N----SQLVNENVYAILPDGEGNLWLGT 469 (795)
T ss_dssp EEEEET-TTTEEEEEETTTEEEEEETTTCCEEEECT-----T----------T----SCCSCSCEEEEEECSSSCEEEEE
T ss_pred EEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEeec-----C----------C----CCcCCCeeEEEEECCCCCEEEEe
Confidence 999886 67646667777789999987632110000 0 0 00123467777776 34455555
Q ss_pred ecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee---e---e
Q 019117 258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA---R---L 331 (346)
Q Consensus 258 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~---~ 331 (346)
. +.+.+||..+++....... ..........|.++...+++ . |..|+. +-|..||..+++. ... . +
T Consensus 470 ~-~Gl~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~i~~d~~g--~-lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l 540 (795)
T 4a2l_A 470 L-SALVRFNPEQRSFTTIEKE---KDGTPVVSKQITTLFRDSHK--R-LWIGGE-EGLSVFKQEGLDI-QKASILPVSNV 540 (795)
T ss_dssp S-SCEEEEETTTTEEEECCBC---TTCCBCCCCCEEEEEECTTC--C-EEEEES-SCEEEEEEETTEE-EECCCSCSCGG
T ss_pred c-CceeEEeCCCCeEEEcccc---ccccccCCceEEEEEECCCC--C-EEEEeC-CceEEEeCCCCeE-EEecCCCCCCC
Confidence 5 4588899876542110000 00001123568888888777 3 333444 4588899877643 111 0 1
Q ss_pred -eeeEEEEEecCCCC
Q 019117 332 -ICFSLHVKYNPQSV 345 (346)
Q Consensus 332 -~~~~~~~~~spdg~ 345 (346)
...+.++...++|+
T Consensus 541 ~~~~i~~i~~d~~g~ 555 (795)
T 4a2l_A 541 TKLFTNCIYEASNGI 555 (795)
T ss_dssp GGSCEEEEEECTTSC
T ss_pred CCCeeEEEEECCCCC
Confidence 12467777777775
No 256
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.75 E-value=4.7e-05 Score=62.62 Aligned_cols=160 Identities=9% Similarity=-0.061 Sum_probs=97.4
Q ss_pred CceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117 34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 112 (346)
..+..++|++ .++.++.+-...+ |..++.........+.. .......+++. +.+..++++-...+.|.+
T Consensus 73 ~~~~~l~~d~---~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~-----~~~~p~glavd--~~~g~ly~~d~~~~~I~~ 142 (349)
T 3v64_C 73 ENAIALDFHH---RRELVFWSDVTLDRILRANLNGSNVEEVVST-----GLESPGGLAVD--WVHDKLYWTDSGTSRIEV 142 (349)
T ss_dssp SCEEEEEEET---TTTEEEEEETTTTEEEEEETTSCSCEEEECS-----SCSCCCEEEEE--TTTTEEEEEETTTTEEEE
T ss_pred CceEEEEEec---cccEEEEEeccCCceEEEecCCCCceEEEeC-----CCCCccEEEEe--cCCCeEEEEcCCCCeEEE
Confidence 3467889987 2345555554444 88888665443222211 11222335554 644426666666789999
Q ss_pred EEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCC-CCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEE
Q 019117 113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD-ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA 191 (346)
Q Consensus 113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 191 (346)
.+++.......+...-.....+++.|.++.++++-... +.|...++.. .....+.. ..-...+.++++|.++.+++
T Consensus 143 ~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~--~~~~~PnGla~d~~~~~lY~ 219 (349)
T 3v64_C 143 ANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-SGRRIIAD--THLFWPNGLTIDYAGRRMYW 219 (349)
T ss_dssp EETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEESCC--SSCSCEEEEEEETTTTEEEE
T ss_pred EcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-CCcEEEEE--CCCCCcceEEEeCCCCEEEE
Confidence 99875443333333445678999998555555665555 7788888763 33333321 23456789999985666666
Q ss_pred EEecCCeEEEEEccc
Q 019117 192 SCGMDNTVKIWSMKE 206 (346)
Q Consensus 192 s~~~d~~i~iwd~~~ 206 (346)
+-...+.|..+|+..
T Consensus 220 aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 220 VDAKHHVIERANLDG 234 (349)
T ss_dssp EETTTTEEEEEETTS
T ss_pred EECCCCEEEEEeCCC
Confidence 666678899999875
No 257
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.75 E-value=1.7e-05 Score=69.93 Aligned_cols=75 Identities=8% Similarity=0.057 Sum_probs=48.4
Q ss_pred cCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeeeeEEE-
Q 019117 259 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLICFSLH- 337 (346)
Q Consensus 259 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~- 337 (346)
+|.|..||+.+++. +-+..... ++..-.....+ .+++.++.||.++.||.++++.+-.+++...+..
T Consensus 465 ~G~l~A~D~~tG~~---------~W~~~~~~-~~~~g~~~tag--glvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~ 532 (582)
T 1flg_A 465 VGSLRAMDPVSGKV---------VWEHKEHL-PLWAGVLATAG--NLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSP 532 (582)
T ss_dssp SEEEEEECTTTCCE---------EEEEEESS-CCCSCCEEETT--TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred cceEEEEECCCCCE---------EEEecCCC-CCcccceEeCC--CEEEEECCCCcEEEEECCCCCEEEEecCCCCcccC
Confidence 68899999998873 22222111 11111122234 4777899999999999999998887777655432
Q ss_pred -EEecCCCC
Q 019117 338 -VKYNPQSV 345 (346)
Q Consensus 338 -~~~spdg~ 345 (346)
+.|..||+
T Consensus 533 P~~y~~~G~ 541 (582)
T 1flg_A 533 PITWEQDGE 541 (582)
T ss_dssp CEEEEETTE
T ss_pred ceEEEECCE
Confidence 56666664
No 258
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.75 E-value=4e-05 Score=62.33 Aligned_cols=242 Identities=11% Similarity=0.011 Sum_probs=130.3
Q ss_pred CceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecC---------------CCccceEEEEEEEcC-C
Q 019117 34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDE---------------DKEESFYTVSWACNV-D 96 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~-~ 96 (346)
....+++|.+ ++.++.++..++ |..|+...+.. ..+...... ........+++. + +
T Consensus 19 ~~p~~i~~d~----~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~--~~~ 91 (322)
T 2fp8_A 19 YAPNSFTFDS----TNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYN--LQN 91 (322)
T ss_dssp SCCCCEECCT----TCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEE--TTT
T ss_pred CCceEEEEcC----CCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEc--CCC
Confidence 3455678877 677566665554 88888654432 222210000 001234555554 6 5
Q ss_pred CCcEEEEeecCCeEEEEEccCcceeeee---cc-CCCceEEEEEeCCCCceEEEeeC-----------------CCCEEE
Q 019117 97 GIPFLVAGGINGIIRVIDVSNEKLHKSF---VG-HGDSINEIRTQPLKPSLVVSASK-----------------DESVRL 155 (346)
Q Consensus 97 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~-~~~~v~~~~~~~~~~~~l~s~~~-----------------d~~i~i 155 (346)
|. |+.+...+.|..+|..+++..... .+ .......+++.+.++.+.++-.. ++.|..
T Consensus 92 g~--l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 169 (322)
T 2fp8_A 92 NQ--LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK 169 (322)
T ss_dssp TE--EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred Cc--EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence 54 555544556888887765422111 11 12346789998723444444322 367888
Q ss_pred EecCCCeeEEEecccCCCCcceEEEEecCCCCcE-EEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceE
Q 019117 156 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR-IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF 234 (346)
Q Consensus 156 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (346)
+|..+++...... .......++++| +++. +++-...+.|.+|++...... ......
T Consensus 170 ~d~~~~~~~~~~~----~~~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~~------------------~~~~~~ 226 (322)
T 2fp8_A 170 YDPSTKETTLLLK----ELHVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKKG------------------TAEVLV 226 (322)
T ss_dssp EETTTTEEEEEEE----EESCCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTTT------------------CEEEEE
T ss_pred EeCCCCEEEEecc----CCccCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcCC------------------ccceEE
Confidence 8887666433322 223456799998 7664 455466789999998752100 000011
Q ss_pred EEeecccceEEEEec--CCEEEEEee----------cCeEEEEcCCCCCCCCCCccccccccccCC----CcCeeEEEEe
Q 019117 235 IASVHSNYVDCNRWL--GDFILSKSV----------DNEIVLWEPKMKEQSPGEGTADILQKYPVP----ECDIWFIKFS 298 (346)
Q Consensus 235 ~~~~~~~~i~~~~~~--~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~s 298 (346)
. ... ...++++ |++.++... .+.|..+|.. ++ .+..+... ...+..+++
T Consensus 227 ~---~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~---------~~~~~~~~~g~~~~~~~~~~~- 291 (322)
T 2fp8_A 227 K---IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GN---------ILEVIPLPPPFAGEHFEQIQE- 291 (322)
T ss_dssp E---CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SC---------EEEEEECCTTTTTSCCCEEEE-
T ss_pred e---CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CC---------EEEEEECCCCCccccceEEEE-
Confidence 1 112 4556666 665555544 4678888875 33 22333222 234666666
Q ss_pred ecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 299 CDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 299 ~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
.++ .++++...++.|..+++....
T Consensus 292 ~~g--~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 292 HDG--LLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp ETT--EEEEECSSCSEEEEEEC----
T ss_pred eCC--EEEEeecCCCceEEEeccccc
Confidence 355 566666678899999987544
No 259
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.73 E-value=2.4e-05 Score=65.38 Aligned_cols=202 Identities=8% Similarity=-0.093 Sum_probs=115.9
Q ss_pred CceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117 34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 112 (346)
..+..++|.+ ..+.++.+-...+ |..++.........+.. .......+++. +.+..++++-...+.|.+
T Consensus 116 ~~~~gl~~d~---~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~-----~~~~p~glavd--~~~g~lY~~d~~~~~I~~ 185 (386)
T 3v65_B 116 ENAIALDFHH---RRELVFWSDVTLDRILRANLNGSNVEEVVST-----GLESPGGLAVD--WVHDKLYWTDSGTSRIEV 185 (386)
T ss_dssp SCEEEEEEET---TTTEEEEEETTTTEEEEEETTSCCEEEEECS-----SCSCCCCEEEE--TTTTEEEEEETTTTEEEE
T ss_pred CccEEEEEec---CCCeEEEEeCCCCcEEEEecCCCCcEEEEeC-----CCCCccEEEEE--eCCCeEEEEcCCCCeEEE
Confidence 4467899987 2345555554444 88888665443222211 11122235544 644425566666788999
Q ss_pred EEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCC-CCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEE
Q 019117 113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD-ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA 191 (346)
Q Consensus 113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 191 (346)
.+++.......+...-.....+++.|.++.++++-... +.|...++... ....+.. ..-.....|+++|.++.+++
T Consensus 186 ~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~--~~~~~PnGlavd~~~~~lY~ 262 (386)
T 3v65_B 186 ANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIAD--THLFWPNGLTIDYAGRRMYW 262 (386)
T ss_dssp CBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEEC--SSCSCEEEEEEEGGGTEEEE
T ss_pred EeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-CcEEEEE--CCCCCeeeEEEeCCCCEEEE
Confidence 88765443333333445678999998555555555444 67888887643 3333321 23446789999984566666
Q ss_pred EEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEcCCCC
Q 019117 192 SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMK 270 (346)
Q Consensus 192 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~ 270 (346)
+-...+.|..+|+..... .............+++. +.++++-...+.|..++..++
T Consensus 263 aD~~~~~I~~~d~dG~~~-----------------------~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 263 VDAKHHVIERANLDGSHR-----------------------KAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp EETTTTEEEEECTTSCSC-----------------------EEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred EECCCCEEEEEeCCCCee-----------------------EEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCC
Confidence 666678899998865111 00111112233445555 445555556788888886555
Q ss_pred C
Q 019117 271 E 271 (346)
Q Consensus 271 ~ 271 (346)
+
T Consensus 320 ~ 320 (386)
T 3v65_B 320 K 320 (386)
T ss_dssp C
T ss_pred c
Confidence 4
No 260
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.70 E-value=7.3e-06 Score=72.17 Aligned_cols=152 Identities=11% Similarity=0.068 Sum_probs=91.8
Q ss_pred EEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee------cCCeEEEEEccCcceeeee
Q 019117 52 FATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG------INGIIRVIDVSNEKLHKSF 124 (346)
Q Consensus 52 la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~ 124 (346)
++.++.++ +..+|..+++.+......... ....+..--.. .++ .+++++ .+|.|+.+|..+++.+..+
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~-~~~~~~ssP~v--~~g--~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~ 198 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIK-VGSTLTIAPYV--VKD--KVIIGSSGAELGVRGYLTAYDVKTGEQVWRA 198 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGG-GTCBCCSCCEE--ETT--EEEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCC-ccceeecCCEE--ECC--EEEEEecccccCCCCeEEEEECCCCcEEEEE
Confidence 55555555 999999999887665431100 00011110011 134 455554 3799999999999988776
Q ss_pred ccCCCc-------------------------------------e-EEEEEeCCCCceEEEeeCC----------------
Q 019117 125 VGHGDS-------------------------------------I-NEIRTQPLKPSLVVSASKD---------------- 150 (346)
Q Consensus 125 ~~~~~~-------------------------------------v-~~~~~~~~~~~~l~s~~~d---------------- 150 (346)
...... + ...++.+ ...+++.+..+
T Consensus 199 ~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~ 277 (599)
T 1w6s_A 199 YATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWT 277 (599)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTS
T ss_pred cCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeCCCCccccCcccCCCcccc
Confidence 532111 0 1345556 55566666544
Q ss_pred CCEEEEecCCCeeEEEecccCCCC--------cceEEEEec-CCCC---cEEEEEecCCeEEEEEccccceeee
Q 019117 151 ESVRLWNVQTGICILIFAGAGGHR--------NEVLSVDFH-PSDI---YRIASCGMDNTVKIWSMKEFWTYVE 212 (346)
Q Consensus 151 ~~i~iwd~~~~~~~~~~~~~~~~~--------~~v~~~~~~-~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~ 212 (346)
+.|..+|.++++.+..++... |. .++. +... . ++ ..++.++.+|.+.++|.++++....
T Consensus 278 ~sv~Ald~~TG~~~W~~q~~~-~d~wd~d~~~~p~l-~d~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~ 348 (599)
T 1w6s_A 278 MTIFGRDADTGEAKFGYQKTP-HDEWDYAGVNVMML-SEQKDK-DGKARKLLTHPDRNGIVYTLDRTDGALVSA 348 (599)
T ss_dssp SEEEEEETTTCCEEEEEESST-TCSSCCCCCCCCEE-EEEECT-TSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ceEEEEeCCCCceeeEeecCC-CccccccCCCccEE-Eecccc-CCcEEEEEEEECCCcEEEEEECCCCCEeec
Confidence 379999999999998887421 21 1222 2222 3 45 5677788999999999988665443
No 261
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.69 E-value=7e-05 Score=60.40 Aligned_cols=236 Identities=9% Similarity=-0.019 Sum_probs=127.7
Q ss_pred ccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117 20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI 98 (346)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (346)
....+....+... .....++|+| +++++++-..++ |..||... .....+. .......+++ +++|+
T Consensus 19 ~~~~~~~~~~p~~-~~pegia~~~----~g~lyv~d~~~~~I~~~d~~g-~~~~~~~------~~~~p~gia~--~~dG~ 84 (306)
T 2p4o_A 19 LAPAKIITSFPVN-TFLENLASAP----DGTIFVTNHEVGEIVSITPDG-NQQIHAT------VEGKVSGLAF--TSNGD 84 (306)
T ss_dssp CCCEEEEEEECTT-CCEEEEEECT----TSCEEEEETTTTEEEEECTTC-CEEEEEE------CSSEEEEEEE--CTTSC
T ss_pred CCCceEeEeCCCC-CCcceEEECC----CCCEEEEeCCCCeEEEECCCC-ceEEEEe------CCCCceeEEE--cCCCc
Confidence 3445556666433 5577899988 677777775555 88888543 3322222 1234445555 48888
Q ss_pred cEEEEeecC--CeEEEEEccCcceeeeec-cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee-EEEecc-----
Q 019117 99 PFLVAGGIN--GIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC-ILIFAG----- 169 (346)
Q Consensus 99 ~~l~~~~~d--g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~----- 169 (346)
++++.... ..|..+|..+++...... ........++..+ ++..+++-..++.|.++|...++. +.....
T Consensus 85 -l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~ 162 (306)
T 2p4o_A 85 -LVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARS 162 (306)
T ss_dssp -EEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred -EEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccc
Confidence 65555332 246677777776533222 1222334555555 555555555688899999875432 211110
Q ss_pred -cCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEe
Q 019117 170 -AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW 248 (346)
Q Consensus 170 -~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 248 (346)
....-.....+ +|+++.++++-...+.|..|++..... .. ........ .....+++
T Consensus 163 ~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~-~~----------------~~~~~~~~----~~P~gi~v 219 (306)
T 2p4o_A 163 NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDK-PG----------------EPEIFVEQ----TNIDDFAF 219 (306)
T ss_dssp STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSC-BC----------------CCEEEEES----CCCSSEEE
T ss_pred cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCC-CC----------------ccEEEecc----CCCCCeEE
Confidence 00112244556 663445566666678999999874100 00 00000011 12334555
Q ss_pred c--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEe---ecCC
Q 019117 249 L--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS---CDFH 302 (346)
Q Consensus 249 ~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~ 302 (346)
+ |++.++....+.|.++|.. ++. ..+..+.......++++|. +++.
T Consensus 220 d~dG~l~va~~~~~~V~~~~~~-G~~-------~~~~~~~~~~~~p~~~a~~g~~~d~~ 270 (306)
T 2p4o_A 220 DVEGNLYGATHIYNSVVRIAPD-RST-------TIIAQAEQGVIGSTAVAFGQTEGDCT 270 (306)
T ss_dssp BTTCCEEEECBTTCCEEEECTT-CCE-------EEEECGGGTCTTEEEEEECCSTTTTT
T ss_pred CCCCCEEEEeCCCCeEEEECCC-CCE-------EEEeecccccCCceEEEEecccCCCC
Confidence 5 7776666667899999975 331 0122233333567899998 7863
No 262
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=0.00011 Score=67.43 Aligned_cols=268 Identities=9% Similarity=-0.032 Sum_probs=150.2
Q ss_pred CceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeee--cCCCccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 019117 34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYV--DEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 111 (346)
..|.++...+ ++.+.+... +++.+||..++.......... .......|.++.. .++|. |..|...+-|.
T Consensus 211 ~~i~~i~~d~----~g~lwigt~-~Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~--d~~g~--lWigt~~~Gl~ 281 (781)
T 3v9f_A 211 NDVRCIYKDT----NGNIWIGTS-KGLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQ--LKDNK--LWIATELNGIM 281 (781)
T ss_dssp SSEEEEEECT----TCCEEEEET-TEEEEEETTTTEEEC-----------CCCCEEEEEE--CTTSE--EEEEESSSCEE
T ss_pred CceeEEEEcC----CCCEEEEeC-CcHheECCCCCcEEEEEcCCCccccccCceEEEEEE--CCCCC--EEEEeCCCCeE
Confidence 4577777655 566666654 489999966554322111100 0112345655544 36665 66677645688
Q ss_pred EEEccCcceeeeec--------------cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEec------ccC
Q 019117 112 VIDVSNEKLHKSFV--------------GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA------GAG 171 (346)
Q Consensus 112 iwd~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------~~~ 171 (346)
++|..+++...... -....|.++...+ ++ .|..|+.++-|..++........... ...
T Consensus 282 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~-~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 359 (781)
T 3v9f_A 282 ILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS-FN-NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESS 359 (781)
T ss_dssp EEETTCC---------CEEECBCSSTTSBSSSCEEEEEECS-SC-CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSC
T ss_pred EECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC-CC-CEEEEecCCeEEEeCCCCCcceeeccCccccccCC
Confidence 89987665322111 1345788988876 44 46667767779999987554322211 001
Q ss_pred CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-C
Q 019117 172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-G 250 (346)
Q Consensus 172 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 250 (346)
.....|.++...+ ++. |..|+.++-|..||......... ..........|.++..+ .
T Consensus 360 l~~~~v~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~~~~--------------------~~~~~~~~~~v~~i~~d~~ 417 (781)
T 3v9f_A 360 LSNKVVSSVCDDG-QGK-LWIGTDGGGINVFENGKRVAIYN--------------------KENRELLSNSVLCSLKDSE 417 (781)
T ss_dssp CSSSCEEEEEECT-TSC-EEEEEBSSCEEEEETTEEEEECC-------------------------CCCSBEEEEEECTT
T ss_pred CCCcceEEEEEcC-CCC-EEEEeCCCcEEEEECCCCeEEEc--------------------cCCCCCCCcceEEEEECCC
Confidence 1345799999886 555 55566666788888765211000 00001234568888776 5
Q ss_pred CEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee
Q 019117 251 DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR 330 (346)
Q Consensus 251 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (346)
..|..|+.++.+..++..+++... ..........|.++...+++ . |..|+. +-|..||..+++......
T Consensus 418 g~lWigt~~~Gl~~~~~~~~~~~~-------~~~~~~~~~~v~~i~~d~~g--~-lwigt~-~Gl~~~~~~~~~~~~~~~ 486 (781)
T 3v9f_A 418 GNLWFGTYLGNISYYNTRLKKFQI-------IELEKNELLDVRVFYEDKNK--K-IWIGTH-AGVFVIDLASKKVIHHYD 486 (781)
T ss_dssp SCEEEEETTEEEEEECSSSCEEEE-------CCSTTTCCCCEEEEEECTTS--E-EEEEET-TEEEEEESSSSSCCEEEC
T ss_pred CCEEEEeccCCEEEEcCCCCcEEE-------eccCCCCCCeEEEEEECCCC--C-EEEEEC-CceEEEeCCCCeEEeccc
Confidence 566667777779999987654210 00001234578888777776 3 444444 458899988766433322
Q ss_pred e------eeeEEEEEecCCCC
Q 019117 331 L------ICFSLHVKYNPQSV 345 (346)
Q Consensus 331 ~------~~~~~~~~~spdg~ 345 (346)
. ...+.++...++|+
T Consensus 487 ~~~~~~~~~~i~~i~~d~~g~ 507 (781)
T 3v9f_A 487 TSNSQLLENFVRSIAQDSEGR 507 (781)
T ss_dssp TTTSSCSCSCEEEEEECTTCC
T ss_pred CcccccccceeEEEEEcCCCC
Confidence 1 23466777777664
No 263
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=4.2e-05 Score=70.30 Aligned_cols=251 Identities=10% Similarity=-0.055 Sum_probs=141.5
Q ss_pred CCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeee-----ecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117 33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSY-----VDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (346)
Q Consensus 33 ~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 107 (346)
...|.++...+ +|.+.+....++|..++...... ..+... ........|.++.. +++|. |..|+.+
T Consensus 312 ~~~v~~i~~D~----~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~v~~i~~--d~~g~--lWigt~~ 382 (781)
T 3v9f_A 312 NASARYIFQDS----FNNIWIGTWGGGINFISNAPPTF-HTWSYSPTQMNESSLSNKVVSSVCD--DGQGK--LWIGTDG 382 (781)
T ss_dssp SSCEEEEEECS----SCCEEEEEBSSCEEEECSSCCSC-EEEC----CCCSSCCSSSCEEEEEE--CTTSC--EEEEEBS
T ss_pred CCeEEEEEEeC----CCCEEEEecCCeEEEeCCCCCcc-eeeccCccccccCCCCCcceEEEEE--cCCCC--EEEEeCC
Confidence 45688888765 56766666577799998655432 222110 01112345655544 36675 6677766
Q ss_pred CeEEEEEccCcceeeee---ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecC
Q 019117 108 GIIRVIDVSNEKLHKSF---VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP 184 (346)
Q Consensus 108 g~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 184 (346)
+-|..|+..+++..... ......|.++...+ ++ .|..|+.++-|..+|..+++.. .+.........|.++...+
T Consensus 383 ~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g-~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~ 459 (781)
T 3v9f_A 383 GGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EG-NLWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDK 459 (781)
T ss_dssp SCEEEEETTEEEEECC-----CCCSBEEEEEECT-TS-CEEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECT
T ss_pred CcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CC-CEEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECC
Confidence 66889997765432211 12346788888876 44 4555676667899998776543 3321012346789998886
Q ss_pred CCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEE
Q 019117 185 SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIV 263 (346)
Q Consensus 185 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~ 263 (346)
++.+ ..|+. +-|..||..+........ .. . .......|.++..+ ...|..|+.++-+.
T Consensus 460 -~g~l-wigt~-~Gl~~~~~~~~~~~~~~~-----~~--------~-----~~~~~~~i~~i~~d~~g~lWigt~~~Gl~ 518 (781)
T 3v9f_A 460 -NKKI-WIGTH-AGVFVIDLASKKVIHHYD-----TS--------N-----SQLLENFVRSIAQDSEGRFWIGTFGGGVG 518 (781)
T ss_dssp -TSEE-EEEET-TEEEEEESSSSSCCEEEC-----TT--------T-----SSCSCSCEEEEEECTTCCEEEEESSSCEE
T ss_pred -CCCE-EEEEC-CceEEEeCCCCeEEeccc-----Cc--------c-----cccccceeEEEEEcCCCCEEEEEcCCCEE
Confidence 6654 44454 568888877622100000 00 0 00113557777776 44566666655588
Q ss_pred EEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCc
Q 019117 264 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP 325 (346)
Q Consensus 264 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~ 325 (346)
.+|..+.+... ....-......|.++...+++ . |..++.+|.|..||..+++.
T Consensus 519 ~~~~~~~~~~~------~~~~~~l~~~~i~~i~~d~~g--~-lWi~T~~Glv~~~d~~~~~~ 571 (781)
T 3v9f_A 519 IYTPDMQLVRK------FNQYEGFCSNTINQIYRSSKG--Q-MWLATGEGLVCFPSARNFDY 571 (781)
T ss_dssp EECTTCCEEEE------ECTTTTCSCSCEEEEEECTTS--C-EEEEETTEEEEESCTTTCCC
T ss_pred EEeCCCCeEEE------ccCCCCCCCCeeEEEEECCCC--C-EEEEECCCceEEECCCCCcE
Confidence 89887653110 000011134568888887777 3 44444466658888877653
No 264
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.67 E-value=0.00011 Score=61.65 Aligned_cols=237 Identities=5% Similarity=-0.073 Sum_probs=139.2
Q ss_pred cEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCc----ceeeeec
Q 019117 50 NVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----KLHKSFV 125 (346)
Q Consensus 50 ~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~ 125 (346)
.+|+.+....|+..++........+. ....+..++|. +.+..++++-...+.|..+++... .....+.
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~~~~~------~~~~~~~l~~d--~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~ 155 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYTSLIP------NLRNVVALDTE--VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 155 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCEEEEC------SCSCEEEEEEE--TTTTEEEEEETTTTEEEEEEC------CCCEEEEC
T ss_pred ceeEEeccceeEEEccCCcceeEecc------ccCcceEEeee--eccCceEEEecCCCeEEEEEcccCCCCCcceEEEe
Confidence 46666666678888877654433332 23345556665 655425555556788999998652 2223333
Q ss_pred cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEec-CCeEEEEEc
Q 019117 126 GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-DNTVKIWSM 204 (346)
Q Consensus 126 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~iwd~ 204 (346)
........+++.+.+++++++-...+.|.+.++........+. ........|+++|.++.++++-.. .+.|...++
T Consensus 156 ~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~---~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~ 232 (400)
T 3p5b_L 156 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 232 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE---CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEET
T ss_pred CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe---CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeC
Confidence 3445678899987456666676777899999987554433343 234568899999845555555433 367888887
Q ss_pred cccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEE-eecCeEEEEcCCCCCCCCCCccccc
Q 019117 205 KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK-SVDNEIVLWEPKMKEQSPGEGTADI 281 (346)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~ 281 (346)
.... ........-.....|+++ ++.|..+ ...+.|..+|++.... ..
T Consensus 233 dG~~-----------------------~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-------~~ 282 (400)
T 3p5b_L 233 NGVD-----------------------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KT 282 (400)
T ss_dssp TSCS-----------------------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-------EE
T ss_pred CCCc-----------------------cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-------EE
Confidence 6511 111111122345667776 4555444 4567899999875431 11
Q ss_pred cccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeee
Q 019117 282 LQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR 330 (346)
Q Consensus 282 ~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (346)
+...........++++. .+ .++.+-...+.|..+|..+++.+....
T Consensus 283 ~~~~~~~l~~P~gl~v~-~~--~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 283 ILEDEKRLAHPFSLAVF-ED--KVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EEECSSTTSSEEEEEEE-TT--EEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EEeCCCCCCCCEEEEEe-CC--EEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 11111122344566663 22 466777778899999987877655443
No 265
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.64 E-value=0.00019 Score=65.38 Aligned_cols=236 Identities=6% Similarity=-0.075 Sum_probs=134.0
Q ss_pred cEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCc----ceeeeec
Q 019117 50 NVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----KLHKSFV 125 (346)
Q Consensus 50 ~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~ 125 (346)
.+|+.+....|+..++........+. ....+..+++. +.+..++++-...+.|+.+++... .....+.
T Consensus 396 p~Ll~an~~~Ir~i~l~~~~~~~l~~------~~~~~~gl~~d--~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~ 467 (791)
T 3m0c_C 396 AYLFFTNRHEVRKMTLDRSEYTSLIP------NLRNVVALDTE--VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 467 (791)
T ss_dssp CEEEEECBSSEEEECTTSCCCEEEEC------SCSSEEEEEEE--TTTTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred cccccccccceeEeeccCCcceeeec------CCCceEEEeec--ccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe
Confidence 35555555668887776554433332 22334445554 644425566666788999988753 2233333
Q ss_pred cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecC-CeEEEEEc
Q 019117 126 GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-NTVKIWSM 204 (346)
Q Consensus 126 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~iwd~ 204 (346)
........|++.+.+++++++-...+.|.+.++........+. ........|+++|..+.++++-... +.|...++
T Consensus 468 ~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~---~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~ 544 (791)
T 3m0c_C 468 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 544 (791)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE---CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe---CCCCCcceEEEecCCCCEEEecCCCCCeEEEEec
Confidence 3445667899987455677777778899999987444333333 2445689999998445555554333 67888887
Q ss_pred cccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEE-eecCeEEEEcCCCCCCCCCCccccc
Q 019117 205 KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK-SVDNEIVLWEPKMKEQSPGEGTADI 281 (346)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~ 281 (346)
.... ........-.....|+++ +..|+.+ ...+.|...++...... .
T Consensus 545 dG~~-----------------------~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~-------~ 594 (791)
T 3m0c_C 545 NGVD-----------------------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-------T 594 (791)
T ss_dssp TSCC-----------------------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-------E
T ss_pred CCCc-----------------------eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE-------E
Confidence 6521 111111122345667766 4444444 45678999998764311 1
Q ss_pred cccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee
Q 019117 282 LQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA 329 (346)
Q Consensus 282 ~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 329 (346)
+..-...-....+|++. +. .++++-...+.|...|..+++.+..+
T Consensus 595 v~~~~~~l~~P~glav~--~~-~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 595 ILEDEKRLAHPFSLAVF--ED-KVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEECTTTTSSEEEEEEE--TT-EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EecCCCccCCCCEEEEe--CC-EEEEEECCCCEEEEEeCCCCcceEEe
Confidence 11111111234455553 32 46666677788988888777654443
No 266
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.63 E-value=0.00011 Score=59.53 Aligned_cols=234 Identities=8% Similarity=-0.031 Sum_probs=135.0
Q ss_pred cEEEEEcCCcEEEEEeccCc--eeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCccee-eeecc
Q 019117 50 NVFATVGGNRVTVYQCLEGG--VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH-KSFVG 126 (346)
Q Consensus 50 ~~la~~~~~~v~i~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~ 126 (346)
.+|+.+....|+..++.... ....+.. ......+.|. +.+..++.+-...+.|..+++...... ..+..
T Consensus 5 p~ll~~~~~~I~~i~l~~~~~~~~~~~~~------~~~~~~ld~d--~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~ 76 (318)
T 3sov_A 5 PLLLYANRRDLRLVDATNGKENATIVVGG------LEDAAAVDFV--FSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS 76 (318)
T ss_dssp CEEEEECEEEEEEEETTCTTSCCEEEEEE------EEEEEEEEEE--GGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE
T ss_pred cEEEEEccCeEEEEECCCCceEEEEEecC------CCccEEEEEE--eCCCEEEEEECCCCcEEEEEccCCCceEEEEcC
Confidence 35566655669999987653 1122221 1223334444 644426666667789999998766422 22222
Q ss_pred CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe-cCCeEEEEEcc
Q 019117 127 HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMK 205 (346)
Q Consensus 127 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~ 205 (346)
.-.....+++.+.++.++++-...+.|.++++........+. ........++++|.++.++++-. ..+.|...++.
T Consensus 77 ~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~---~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 153 (318)
T 3sov_A 77 GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW---QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD 153 (318)
T ss_dssp CCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT
T ss_pred CCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe---CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC
Confidence 334567888887456666776677899999986433322222 24456789999984455555442 35778888776
Q ss_pred ccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEE-EEEeecCeEEEEcCCCCCCCCCCcccccc
Q 019117 206 EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADIL 282 (346)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 282 (346)
.... .......-..-..++++ ++.| ++-+..+.|..+|++.... ..+
T Consensus 154 G~~~-----------------------~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-------~~~ 203 (318)
T 3sov_A 154 GSSR-----------------------FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-------QAV 203 (318)
T ss_dssp SCSC-----------------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEE
T ss_pred CCCe-----------------------EEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-------EEE
Confidence 4110 00111112234567776 4444 4445578899999875331 011
Q ss_pred ccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee
Q 019117 283 QKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA 329 (346)
Q Consensus 283 ~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 329 (346)
. .........+++..+ .++.+-...+.|..++..+++.....
T Consensus 204 ~--~~~~~~P~glav~~~---~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 204 V--KGSLPHPFALTLFED---ILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp E--CSCCSCEEEEEEETT---EEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred e--cCCCCCceEEEEeCC---EEEEEecCCCeEEEEECCCCCceEEE
Confidence 1 112335566777432 46667777889999999887754443
No 267
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.63 E-value=2.1e-06 Score=77.07 Aligned_cols=203 Identities=13% Similarity=0.046 Sum_probs=114.0
Q ss_pred ccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCc-----cce-EEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceee
Q 019117 49 FNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKE-----ESF-YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHK 122 (346)
Q Consensus 49 ~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~-----~~v-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 122 (346)
+.+++....+.|..+|..+++.+............ ..+ ..+++ .+. .++.++.|+.|..+|..+++.+.
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~v~v~~~dg~l~alD~~tG~~~W 141 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGD-KVYVGTLDGRLIALDAKTGKAIW 141 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBT-EEEEECTTSEEEEEETTTCCEEE
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECC-EEEEEcCCCEEEEEECCCCCEee
Confidence 44555444444999999999887766432110000 000 01122 133 68888889999999999999887
Q ss_pred eeccCC----CceEE-EEEeCCCCceEEEeeC------CCCEEEEecCCCeeEEEecccCCCC-----------------
Q 019117 123 SFVGHG----DSINE-IRTQPLKPSLVVSASK------DESVRLWNVQTGICILIFAGAGGHR----------------- 174 (346)
Q Consensus 123 ~~~~~~----~~v~~-~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~----------------- 174 (346)
.+.... ..+.+ -.+. ++ .++.+.. +|.|..+|.++|+.+..+....+..
T Consensus 142 ~~~~~~~~~~~~~~~~P~v~--~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 218 (668)
T 1kv9_A 142 SQQTTDPAKPYSITGAPRVV--KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (668)
T ss_dssp EEECSCTTSSCBCCSCCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred eeccCCCCCcceecCCCEEE--CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence 775421 11111 1111 33 4454433 5899999999999998886311110
Q ss_pred -----------cceEEEEecCCCCcEEEEEecCC-------------------eEEEEEccccceeeeeceeecCCCCCC
Q 019117 175 -----------NEVLSVDFHPSDIYRIASCGMDN-------------------TVKIWSMKEFWTYVEKSFTWTDLPSKF 224 (346)
Q Consensus 175 -----------~~v~~~~~~~~~~~~l~s~~~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~ 224 (346)
.....++++| ...+++.++.++ .|..+|.++++......... +. ..
T Consensus 219 g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~--~~-~w 294 (668)
T 1kv9_A 219 GDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTP--GD-SW 294 (668)
T ss_dssp SSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESST--TC-CS
T ss_pred ccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCC--Cc-cc
Confidence 0112467887 666777777665 38888888854322211100 00 00
Q ss_pred CCccceeceEEEeecccceEEEEecCC---EEEEEeecCeEEEEcCCCCCC
Q 019117 225 PTKYVQFPVFIASVHSNYVDCNRWLGD---FILSKSVDNEIVLWEPKMKEQ 272 (346)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~ 272 (346)
.. ... .+..+..+.+.|+ .++.++.+|.+.++|..+++.
T Consensus 295 d~-~~~--------~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 336 (668)
T 1kv9_A 295 DF-TAT--------QQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL 336 (668)
T ss_dssp CC-CCC--------SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred cc-cCC--------CCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence 00 000 0001122333444 688899999999999998874
No 268
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.58 E-value=8.3e-05 Score=57.63 Aligned_cols=200 Identities=11% Similarity=0.030 Sum_probs=125.8
Q ss_pred eeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEE
Q 019117 123 SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW 202 (346)
Q Consensus 123 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iw 202 (346)
.+.+-...+..++++|+++.++++...++.|...|.. ++.+..+.. +-....-.+++.+ ++.++++.-.++.+.++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l--~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL--DFVKDLETIEYIG-DNQFVISDERDYAIYVI 96 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC--SSCSSEEEEEECS-TTEEEEEETTTTEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec--CCCCChHHeEEeC-CCEEEEEECCCCcEEEE
Confidence 4555667899999999555566667888999999998 888887752 1225677888887 77776776667889999
Q ss_pred Eccccceeee-eceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccc
Q 019117 203 SMKEFWTYVE-KSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTA 279 (346)
Q Consensus 203 d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 279 (346)
++........ ... ..++. ..........++|+ ++.|.++.......+|.++...... ..
T Consensus 97 ~v~~~~~i~~~~~~--------------~~~~~-~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~---~l 158 (255)
T 3qqz_A 97 SLTPNSEVKILKKI--------------KIPLQ-ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSN---EL 158 (255)
T ss_dssp EECTTCCEEEEEEE--------------ECCCS-SCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSS---CC
T ss_pred EcCCCCeeeeeeee--------------ccccc-cccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCC---ce
Confidence 8876321000 000 00000 01234456889998 5577777776555666554210000 00
Q ss_pred cccc----cccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee----------eEEEEEecCCCC
Q 019117 280 DILQ----KYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC----------FSLHVKYNPQSV 345 (346)
Q Consensus 280 ~~~~----~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------~~~~~~~spdg~ 345 (346)
..+. .-..+...+.++++.|... .+++.......|.++|.. ++++....+.. ....|+|.|+|+
T Consensus 159 ~i~~~~~~~~~~~~~d~S~l~~dp~tg-~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ 236 (255)
T 3qqz_A 159 HISKDKALQRQFTLDDVSGAEFNQQKN-TLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN 236 (255)
T ss_dssp EEEECHHHHHTCCSSCCCEEEEETTTT-EEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred eeecchhhccccccCCceeEEEcCCCC-eEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence 0110 0011234678999999875 677778888899999976 45666666652 357799999986
Q ss_pred C
Q 019117 346 Y 346 (346)
Q Consensus 346 ~ 346 (346)
+
T Consensus 237 l 237 (255)
T 3qqz_A 237 I 237 (255)
T ss_dssp E
T ss_pred E
Confidence 3
No 269
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.57 E-value=0.00016 Score=58.32 Aligned_cols=227 Identities=11% Similarity=0.034 Sum_probs=126.0
Q ss_pred eEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCC--CEEEEecCCCee
Q 019117 86 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE--SVRLWNVQTGIC 163 (346)
Q Consensus 86 v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~ 163 (346)
...++|. ++|+ ++++-..++.|..||.... ....+. ....+..+++.+ +++++++..... .|..+|..+++.
T Consensus 34 pegia~~--~~g~-lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~ 107 (306)
T 2p4o_A 34 LENLASA--PDGT-IFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTV 107 (306)
T ss_dssp EEEEEEC--TTSC-EEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred cceEEEC--CCCC-EEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeE
Confidence 3445555 8887 7777767899999997653 333332 345688999999 677665554322 466677777765
Q ss_pred EEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce
Q 019117 164 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV 243 (346)
Q Consensus 164 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 243 (346)
...... ........++..+ ++..+++-..++.|.++|............... .... .. ..-...
T Consensus 108 ~~~~~~--~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~-~~~~-~~-----------~~~~~p 171 (306)
T 2p4o_A 108 ETLLTL--PDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPML-ARSN-SE-----------SVFPAA 171 (306)
T ss_dssp EEEEEC--TTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGG-SCSS-TT-----------CCSCSE
T ss_pred EEEEeC--CCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCcc-cccc-cc-----------CCCCcC
Confidence 433321 1222345555555 566555555688898888764211110000000 0000 00 000112
Q ss_pred EEEEecCCEE-EEEeecCeEEEEcCCC-CCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117 244 DCNRWLGDFI-LSKSVDNEIVLWEPKM-KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (346)
Q Consensus 244 ~~~~~~~~~l-~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~ 321 (346)
..+..+++.| ++-...+.|..+++.. ++.. ........ .....+++.++| .+.++....+.|.++|..
T Consensus 172 ngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~----~~~~~~~~----~~P~gi~vd~dG--~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 172 NGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPG----EPEIFVEQ----TNIDDFAFDVEG--NLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp EEEEEETTEEEEEETTTTEEEEEEBCTTSCBC----CCEEEEES----CCCSSEEEBTTC--CEEEECBTTCCEEEECTT
T ss_pred CCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCC----ccEEEecc----CCCCCeEECCCC--CEEEEeCCCCeEEEECCC
Confidence 2233346544 4445678999999875 2210 01111111 245668899998 566666677899999975
Q ss_pred CCCcceeee--ee-eeEEEEEec---CCCC
Q 019117 322 SSPPVLIAR--LI-CFSLHVKYN---PQSV 345 (346)
Q Consensus 322 ~~~~~~~~~--~~-~~~~~~~~s---pdg~ 345 (346)
++...... .. ..+.+++|. ||++
T Consensus 242 -G~~~~~~~~~~~~~~p~~~a~~g~~~d~~ 270 (306)
T 2p4o_A 242 -RSTTIIAQAEQGVIGSTAVAFGQTEGDCT 270 (306)
T ss_dssp -CCEEEEECGGGTCTTEEEEEECCSTTTTT
T ss_pred -CCEEEEeecccccCCceEEEEecccCCCC
Confidence 55432222 22 347889998 8864
No 270
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.56 E-value=6.6e-05 Score=68.52 Aligned_cols=152 Identities=10% Similarity=-0.012 Sum_probs=89.6
Q ss_pred ceEEEEEE-eecCCCccEEEEEcC----Cc--EEEEEeccC-ceeee-EeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117 35 PLYAVVFN-FIDSRYFNVFATVGG----NR--VTVYQCLEG-GVIAA-LQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (346)
Q Consensus 35 ~v~~~~~~-p~~~~~~~~la~~~~----~~--v~i~~~~~~-~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 105 (346)
.+...+|| | +|++||.+.+ +. |+++|+.++ +.+.. +.. ....++|+ |||+ .|+...
T Consensus 175 ~~~~~~~S~P----DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~--------~~~~~~Ws--pDg~-~l~y~~ 239 (751)
T 2xe4_A 175 DVMEVKPAPP----EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG--------TNGEIVWG--PDHT-SLFYVT 239 (751)
T ss_dssp EEEEEEECTT----TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE--------ECSCCEEC--SSTT-EEEEEE
T ss_pred EEeeeEecCC----CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC--------ceeeEEEe--cCCC-EEEEEE
Confidence 67889999 8 7888875432 22 999998887 53211 111 11224555 9998 555555
Q ss_pred cC-----CeEEEEEccCcce--eeeec-cCCCceEEEEEeCCCCceEEEee---CCCCEEEEecCCCe-eE--EEecccC
Q 019117 106 IN-----GIIRVIDVSNEKL--HKSFV-GHGDSINEIRTQPLKPSLVVSAS---KDESVRLWNVQTGI-CI--LIFAGAG 171 (346)
Q Consensus 106 ~d-----g~i~iwd~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~-~~--~~~~~~~ 171 (346)
.+ ..|.++++.+++. ...+. ........+.|+| ++++|+..+ ....|.++|+.++. .. ..+..
T Consensus 240 ~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~-- 316 (751)
T 2xe4_A 240 KDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP-- 316 (751)
T ss_dssp ECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC--
T ss_pred ECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec--
Confidence 44 3688888877642 22222 2234567889999 777666544 23468888887652 12 33321
Q ss_pred CCCcceEEEEecCCCCcEEEEEecC--C--eEEEEEcc
Q 019117 172 GHRNEVLSVDFHPSDIYRIASCGMD--N--TVKIWSMK 205 (346)
Q Consensus 172 ~~~~~v~~~~~~~~~~~~l~s~~~d--~--~i~iwd~~ 205 (346)
........+.|+. ++.+++....+ + .|..+|+.
T Consensus 317 ~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~ 353 (751)
T 2xe4_A 317 REKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRG 353 (751)
T ss_dssp CCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETT
T ss_pred CCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCC
Confidence 2345566677664 66666665554 3 45556654
No 271
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.50 E-value=1.2e-05 Score=72.19 Aligned_cols=117 Identities=11% Similarity=0.031 Sum_probs=67.0
Q ss_pred EEEEEeecCCCccEEEEEcCC------------cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117 38 AVVFNFIDSRYFNVFATVGGN------------RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (346)
Q Consensus 38 ~~~~~p~~~~~~~~la~~~~~------------~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 105 (346)
++++.| .++++++.|+.+ .+.+||..+++.... ..... .+.......++ ..+|+ +++.|+
T Consensus 190 ~~av~~---~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~-~~~~~-~~~~~~~~~~~--~~~g~-lyv~GG 261 (656)
T 1k3i_A 190 AAAIEP---TSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR-TVTVT-KHDMFCPGISM--DGNGQ-IVVTGG 261 (656)
T ss_dssp EEEEET---TTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC-EEEEC-SCCCSSCEEEE--CTTSC-EEEECS
T ss_pred eEEEEe---cCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeC-cccCC-CCCCccccccC--CCCCC-EEEeCC
Confidence 445554 246788887532 278888877653322 11111 11111112333 37888 888887
Q ss_pred -cCCeEEEEEccCcceee--eeccCCCceEEEEEeCCCCceEEEee-CC-----CCEEEEecCCCeeE
Q 019117 106 -INGIIRVIDVSNEKLHK--SFVGHGDSINEIRTQPLKPSLVVSAS-KD-----ESVRLWNVQTGICI 164 (346)
Q Consensus 106 -~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~-~d-----~~i~iwd~~~~~~~ 164 (346)
.+..+.+||..+.+-.. .+.... .-.+++..+ ++++++.|+ .+ ..+.+||..+.+-.
T Consensus 262 ~~~~~v~~yd~~t~~W~~~~~~~~~R-~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 262 NDAKKTSLYDSSSDSWIPGPDMQVAR-GYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp SSTTCEEEEEGGGTEEEECCCCSSCC-SSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred CCCCceEEecCcCCceeECCCCCccc-cccceEEec-CCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence 45689999988765322 222111 123455556 678888888 34 56899999877643
No 272
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.47 E-value=0.00039 Score=58.89 Aligned_cols=156 Identities=10% Similarity=0.077 Sum_probs=92.2
Q ss_pred ceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC-C----e
Q 019117 35 PLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN-G----I 109 (346)
Q Consensus 35 ~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d-g----~ 109 (346)
....|+++|.+ ++.++++-..+.|+.+|...+....... .......+++. ++|+ +|+.+... + .
T Consensus 138 ~P~~lavdp~~--~g~Lyv~d~~~~I~~id~~~~~v~~~~~------~~~~P~~ia~d--~~G~-~lyvad~~~~~~~~~ 206 (430)
T 3tc9_A 138 GAVWLSFDPKN--HNHLYLVGEQHPTRLIDFEKEYVSTVYS------GLSKVRTICWT--HEAD-SMIITNDQNNNDRPN 206 (430)
T ss_dssp CCCEEEEETTE--EEEEEEEEBTEEEEEEETTTTEEEEEEC------CCSCEEEEEEC--TTSS-EEEEEECCSCTTSEE
T ss_pred CCCEEEECCCC--CCeEEEEeCCCcEEEEECCCCEEEEEec------CCCCcceEEEe--CCCC-EEEEEeCCCCcccce
Confidence 45678898610 2455555444448888876544332222 22334445554 8888 56665542 1 3
Q ss_pred EEEEEccCccee--eeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117 110 IRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI 187 (346)
Q Consensus 110 i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 187 (346)
+.+.+ ..+... ..+.. ......++++|.++.++++-..++.|..++...+........ +.....+.++|+| ++
T Consensus 207 v~~~~-~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~--~~~~~P~gia~~p-dG 281 (430)
T 3tc9_A 207 NYILT-RESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI--QDSGWEFHIQFHP-SG 281 (430)
T ss_dssp EEEEE-GGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC--SSSSCCEEEEECT-TS
T ss_pred EEEEe-CCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc--CCCCcceeEEEcC-CC
Confidence 33344 333322 22322 234578889985566666666778999999986654333321 1234678999999 77
Q ss_pred c-EEEEEecCCeEEEEEccc
Q 019117 188 Y-RIASCGMDNTVKIWSMKE 206 (346)
Q Consensus 188 ~-~l~s~~~d~~i~iwd~~~ 206 (346)
+ ++++-...+.|..++...
T Consensus 282 ~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 282 NYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SEEEEEETTTTEEEEEEEET
T ss_pred CEEEEEECCCCEEEEEeCCc
Confidence 6 556666678899988764
No 273
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.46 E-value=0.00024 Score=55.11 Aligned_cols=168 Identities=10% Similarity=0.110 Sum_probs=106.2
Q ss_pred eecccCCCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee
Q 019117 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (346)
Q Consensus 27 ~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 105 (346)
+.+.+-.+.+..++|+|. .+.++++...++ |...|.. ++.++.+.. ........+++. +++. ++++.-
T Consensus 20 ~~l~g~~~~lSGla~~~~---~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l----~g~~D~EGIa~~--~~g~-~~vs~E 88 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQ---SNTLFSTINKPAAIVEMTTN-GDLIRTIPL----DFVKDLETIEYI--GDNQ-FVISDE 88 (255)
T ss_dssp EECTTCCSCEEEEEEETT---TTEEEEEEETTEEEEEEETT-CCEEEEEEC----SSCSSEEEEEEC--STTE-EEEEET
T ss_pred eECCCcccCcceeEEeCC---CCEEEEEECCCCeEEEEeCC-CCEEEEEec----CCCCChHHeEEe--CCCE-EEEEEC
Confidence 345666678999999982 345666666666 8888876 666555532 112345556665 7776 666665
Q ss_pred cCCeEEEEEccCcce---eeeec------cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecC---CCeeEEEecc----
Q 019117 106 INGIIRVIDVSNEKL---HKSFV------GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ---TGICILIFAG---- 169 (346)
Q Consensus 106 ~dg~i~iwd~~~~~~---~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~~---- 169 (346)
.++.+.++++..... +.... ..+.....++|+| .++.|+++.+.....+|.++ ....+..+..
T Consensus 89 ~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~ 167 (255)
T 3qqz_A 89 RDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR-QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQ 167 (255)
T ss_dssp TTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET-TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHH
T ss_pred CCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeC-CCCEEEEEECcCCceEEEEcccccCCceeeecchhhc
Confidence 678899998765432 12221 1345578999999 56566666655555666554 1111222210
Q ss_pred cCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117 170 AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (346)
Q Consensus 170 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 206 (346)
...+...+.+++++|..+.+++.....+.+..+|...
T Consensus 168 ~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g 204 (255)
T 3qqz_A 168 RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG 204 (255)
T ss_dssp HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC
Confidence 0123446789999997788888888888999999876
No 274
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.46 E-value=0.00023 Score=62.71 Aligned_cols=59 Identities=8% Similarity=-0.010 Sum_probs=42.8
Q ss_pred CeEEEEEccCcceeeeeccCC----------CceEEEEEe-CCCC---ceEEEeeCCCCEEEEecCCCeeEEEec
Q 019117 108 GIIRVIDVSNEKLHKSFVGHG----------DSINEIRTQ-PLKP---SLVVSASKDESVRLWNVQTGICILIFA 168 (346)
Q Consensus 108 g~i~iwd~~~~~~~~~~~~~~----------~~v~~~~~~-~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~ 168 (346)
+.|..+|.++++.+..++... .++ -+... . ++ ..++.++.+|.+.++|.++++.+....
T Consensus 278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~-l~d~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMM-LSEQKDK-DGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEECT-TSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ceEEEEeCCCCceeeEeecCCCccccccCCCccE-EEecccc-CCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 489999999999887776422 112 12222 3 45 567788999999999999999887765
No 275
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.46 E-value=0.00034 Score=56.63 Aligned_cols=202 Identities=8% Similarity=-0.084 Sum_probs=114.8
Q ss_pred ceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEE
Q 019117 35 PLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVI 113 (346)
Q Consensus 35 ~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw 113 (346)
.+.+++|.+. .+.++.+-..++ |..++...+.....+... .-.....+++. +.+..++++-...+.|.++
T Consensus 36 ~~~~ld~d~~---~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~----~l~~p~glavd--~~~g~ly~~d~~~~~I~~~ 106 (318)
T 3sov_A 36 DAAAVDFVFS---HGLIYWSDVSEEAIKRTEFNKTESVQNVVVS----GLLSPDGLACD--WLGEKLYWTDSETNRIEVS 106 (318)
T ss_dssp EEEEEEEEGG---GTEEEEEETTTTEEEEEETTSSSCCCEEEEE----CCSCCCEEEEE--TTTTEEEEEETTTTEEEEE
T ss_pred ccEEEEEEeC---CCEEEEEECCCCcEEEEEccCCCceEEEEcC----CCCCccEEEEE--cCCCeEEEEECCCCEEEEE
Confidence 4568889872 345555655554 888887655322211110 11122335544 5444266666667899999
Q ss_pred EccCcceeeeeccCCCceEEEEEeCCCCceEEEee-CCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEE
Q 019117 114 DVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS 192 (346)
Q Consensus 114 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 192 (346)
+++.......+.........+++.|.++.++++-. ..+.|...++. +.....+.. ..-...+.++++|.++.++++
T Consensus 107 ~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~--~~l~~Pnglavd~~~~~lY~a 183 (318)
T 3sov_A 107 NLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIIN--SEIYWPNGLTLDYEEQKLYWA 183 (318)
T ss_dssp ETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEEC--SSCSCEEEEEEETTTTEEEEE
T ss_pred ECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEE--CCCCCccEEEEeccCCEEEEE
Confidence 98754333333334456789999984444444432 35778888875 333333321 123567899999855666666
Q ss_pred EecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEcCCCCC
Q 019117 193 CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKE 271 (346)
Q Consensus 193 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~ 271 (346)
-...+.|..+|+..... .............+++. +.++++-...+.|..++..+++
T Consensus 184 D~~~~~I~~~d~dG~~~-----------------------~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 184 DAKLNFIHKSNLDGTNR-----------------------QAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp ETTTTEEEEEETTSCSC-----------------------EEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred ECCCCEEEEEcCCCCce-----------------------EEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCC
Confidence 66678899999875111 00011112233455555 4455555557889999887665
No 276
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.45 E-value=0.00035 Score=56.53 Aligned_cols=206 Identities=8% Similarity=-0.040 Sum_probs=115.2
Q ss_pred CCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccC---ceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG---GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (346)
Q Consensus 33 ~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 108 (346)
...+.+++|++. .+.++.+-..++ |..++.... .....+.. ..-.....+++. +.+..+.++-...+
T Consensus 29 ~~~p~g~~~d~~---~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~----~~~~~p~glavd--~~~~~ly~~d~~~~ 99 (316)
T 1ijq_A 29 LRNVVALDTEVA---SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----RDIQAPDGLAVD--WIHSNIYWTDSVLG 99 (316)
T ss_dssp CSSEEEEEEETT---TTEEEEEETTTTEEEEEEC--------CEEEEC----SSCSCCCEEEEE--TTTTEEEEEETTTT
T ss_pred CCceEEEEEEeC---CCEEEEEECCCCcEEEEECCCCCCCcccEEEEe----CCCCCcCEEEEe--ecCCeEEEEECCCC
Confidence 345778999871 345556655544 888887651 22222110 011223445554 54442556656778
Q ss_pred eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCC-CCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD-ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI 187 (346)
Q Consensus 109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 187 (346)
.|.+.+++.......+.........+++.|.++.++++.... +.|...++. +.....+.. ..-.....++++|.++
T Consensus 100 ~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~--~~~~~P~gla~d~~~~ 176 (316)
T 1ijq_A 100 TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVT--ENIQWPNGITLDLLSG 176 (316)
T ss_dssp EEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEEC--SSCSCEEEEEEETTTT
T ss_pred EEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEE--CCCCCceEEEEeccCC
Confidence 999999875443333333345678999998455555554333 678888875 444443321 2345688999998455
Q ss_pred cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEc
Q 019117 188 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWE 266 (346)
Q Consensus 188 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd 266 (346)
.++++-...+.|..+|+..... ..+............+++. +.++++-...+.|..++
T Consensus 177 ~lY~~D~~~~~I~~~d~dg~~~---------------------~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~ 235 (316)
T 1ijq_A 177 RLYWVDSKLHSISSIDVNGGNR---------------------KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSAN 235 (316)
T ss_dssp EEEEEETTTTEEEEEETTSCSC---------------------EEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCeEEEEecCCCce---------------------EEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEe
Confidence 6556666677999999875111 0010100011223455555 44555555577888888
Q ss_pred CCCCC
Q 019117 267 PKMKE 271 (346)
Q Consensus 267 ~~~~~ 271 (346)
..+++
T Consensus 236 ~~~g~ 240 (316)
T 1ijq_A 236 RLTGS 240 (316)
T ss_dssp TTTCC
T ss_pred CCCCc
Confidence 76665
No 277
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.44 E-value=5.8e-05 Score=68.91 Aligned_cols=112 Identities=9% Similarity=-0.001 Sum_probs=68.8
Q ss_pred EEEEEEEc-CCCCcEEEEeec-C----CeEEEEEccCc-ceee-eeccCCCceEEEEEeCCCCceEEEeeCC-----CCE
Q 019117 87 YTVSWACN-VDGIPFLVAGGI-N----GIIRVIDVSNE-KLHK-SFVGHGDSINEIRTQPLKPSLVVSASKD-----ESV 153 (346)
Q Consensus 87 ~~~~~~~~-~~~~~~l~~~~~-d----g~i~iwd~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i 153 (346)
....+.++ |||+ +|+.+.. + ..|+++|+.++ +.+. .+. .....+.|+| +++.|+....| ..|
T Consensus 175 ~~~~~~~S~PDG~-~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHD-LVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGP-DHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTC-EEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECS-STTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCC-EEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEec-CCCEEEEEEECCCCCCCEE
Confidence 34567789 9998 6664432 2 35999999988 6322 121 1235788999 66666555544 358
Q ss_pred EEEecCCCee--EEEecccCCCCcceEEEEecCCCCcEEEEEec---CCeEEEEEccc
Q 019117 154 RLWNVQTGIC--ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM---DNTVKIWSMKE 206 (346)
Q Consensus 154 ~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~ 206 (346)
.++++.+++. ...+.. ........+.|+| ++++|+.... ...|.++|+..
T Consensus 250 ~~~~lgt~~~~~~lv~~~--~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEE--HNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp EEEETTSCGGGCEEEEEC--CCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSS
T ss_pred EEEECCCCchhcEEEEec--CCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCC
Confidence 8888876542 223321 1234566889999 7766665442 33577778765
No 278
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.43 E-value=9.9e-05 Score=64.95 Aligned_cols=59 Identities=10% Similarity=0.029 Sum_probs=41.9
Q ss_pred CeEEEEEccCcceeeeeccC--C--------CceEEEEEeCCCC---ceEEEeeCCCCEEEEecCCCeeEEEec
Q 019117 108 GIIRVIDVSNEKLHKSFVGH--G--------DSINEIRTQPLKP---SLVVSASKDESVRLWNVQTGICILIFA 168 (346)
Q Consensus 108 g~i~iwd~~~~~~~~~~~~~--~--------~~v~~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~ 168 (346)
+.|..+|.++++.+..++.. . .++ -+...+ ++ ..++.++.+|.+.++|..+++.+..+.
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~ 343 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPV-NGKMTPLLSHIDRNGILYTLNRENGNLIVAEK 343 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEE-TTEEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEeccc-CCcEEEEEEEeCCCcEEEEEECCCCCEEeeec
Confidence 36999999999988777532 1 222 122223 44 367788899999999999999887765
No 279
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.42 E-value=0.00056 Score=57.32 Aligned_cols=206 Identities=7% Similarity=-0.073 Sum_probs=116.2
Q ss_pred CCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc---eeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCC
Q 019117 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG---VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (346)
Q Consensus 33 ~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 108 (346)
...+..|+|++. .+.++.+-..++ |..+++.... ....+.. ........+++. +.+..+.++-...+
T Consensus 111 ~~~~~~l~~d~~---~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~----~~~~~p~glavD--~~~~~lY~~d~~~~ 181 (400)
T 3p5b_L 111 LRNVVALDTEVA---SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----RDIQAPDGLAVD--WIHSNIYWTDSVLG 181 (400)
T ss_dssp CSCEEEEEEETT---TTEEEEEETTTTEEEEEEC------CCCEEEEC----SSCSCEEEEEEE--TTTTEEEEEETTTT
T ss_pred cCcceEEeeeec---cCceEEEecCCCeEEEEEcccCCCCCcceEEEe----CCCCCcccEEEE--ecCCceEEEECCCC
Confidence 456788999872 345555544444 8888765422 1111111 012234445554 54442666666778
Q ss_pred eEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeC-CCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCC
Q 019117 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK-DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI 187 (346)
Q Consensus 109 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 187 (346)
.|.+.+++.......+...-.....|++.|.++.++++-.. .+.|...++........+. ..-.....|++++.++
T Consensus 182 ~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~---~~l~~P~glavd~~~~ 258 (400)
T 3p5b_L 182 TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT---ENIQWPNGITLDLLSG 258 (400)
T ss_dssp EEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC---SSCSCEEEEEEETTTT
T ss_pred eEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE---CCCCceEEEEEEeCCC
Confidence 99999987655444444344567899999944545555422 4788888886433322222 2335789999998455
Q ss_pred cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEc
Q 019117 188 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWE 266 (346)
Q Consensus 188 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd 266 (346)
.++++-...+.|..+|+..... ..+......-.....+++. +.++++-...+.|..+|
T Consensus 259 ~lY~aD~~~~~I~~~d~dG~~~---------------------~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~ 317 (400)
T 3p5b_L 259 RLYWVDSKLHSISSIDVNGGNR---------------------KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSAN 317 (400)
T ss_dssp EEEEEETTTTEEEEEETTSCCC---------------------EEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEE
T ss_pred EEEEEECCCCEEEEEeCCCCcc---------------------EEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEE
Confidence 5555555677899999865211 0111110111223455555 44555555677888888
Q ss_pred CCCCC
Q 019117 267 PKMKE 271 (346)
Q Consensus 267 ~~~~~ 271 (346)
..+++
T Consensus 318 ~~~G~ 322 (400)
T 3p5b_L 318 RLTGS 322 (400)
T ss_dssp SSSCC
T ss_pred cCCCC
Confidence 76665
No 280
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.40 E-value=8.6e-05 Score=65.45 Aligned_cols=59 Identities=8% Similarity=0.021 Sum_probs=43.1
Q ss_pred CeEEEEEccCcceeeeecc--CC--------CceEEEEEe-CCCC---ceEEEeeCCCCEEEEecCCCeeEEEec
Q 019117 108 GIIRVIDVSNEKLHKSFVG--HG--------DSINEIRTQ-PLKP---SLVVSASKDESVRLWNVQTGICILIFA 168 (346)
Q Consensus 108 g~i~iwd~~~~~~~~~~~~--~~--------~~v~~~~~~-~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~ 168 (346)
+.|..+|..+++.+..++. |. .++ -+... . ++ ..++.++.+|.+.++|..+++.+..+.
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~-l~~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 363 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELV-LFDYKAK-DGKIVKATAHADRNGFFYVVDRSNGKLQNAFP 363 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCE-EEEEECS-SSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcE-EEeeecC-CCCEEEEEEEECCCceEEEEECCCCCEecccc
Confidence 6899999999999887753 21 122 12222 2 34 478889999999999999999887765
No 281
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.36 E-value=0.00065 Score=57.95 Aligned_cols=162 Identities=8% Similarity=0.085 Sum_probs=93.0
Q ss_pred eEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEE-----EEcCCCCcEEEEeecCC-
Q 019117 36 LYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSW-----ACNVDGIPFLVAGGING- 108 (346)
Q Consensus 36 v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~~~l~~~~~dg- 108 (346)
...|+|.|.+ .+.++++..... |++.|..++.....+.. ..........++| -++++|. .|+++...+
T Consensus 141 p~~la~dp~~--~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~--~~~~~~~p~~ia~~~~~~~~d~~G~-~lyvad~~~~ 215 (496)
T 3kya_A 141 NGRLAFDPLN--KDHLYICYDGHKAIQLIDLKNRMLSSPLNI--NTIPTNRIRSIAFNKKIEGYADEAE-YMIVAIDYDG 215 (496)
T ss_dssp EEEEEEETTE--EEEEEEEEETEEEEEEEETTTTEEEEEECC--TTSSCSBEEEEEECCCBTTTBCTTC-EEEEEECCCT
T ss_pred CCEEEEccCC--CCEEEEEECCCCeEEEEECCCCEEEEEEcc--CccccCCCcEEEEeecccccCCCCC-EEEEEeCCCC
Confidence 5688998721 245555554434 88888766554433321 1112234555666 0048887 566665443
Q ss_pred ------eEEEEEccC-ccee-----eeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecC-------CCee------
Q 019117 109 ------IIRVIDVSN-EKLH-----KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-------TGIC------ 163 (346)
Q Consensus 109 ------~i~iwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-------~~~~------ 163 (346)
.|.+.+... ++.. ..+... .....++++|.++.++++-..++.|..+|+. ++..
T Consensus 216 ~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 216 KGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp TGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred CcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 255665333 2221 222221 2345788899566667777788889999987 4543
Q ss_pred -----EEE-ecccCCCCcceEEEEecCCCCc-EEEEEecCCeEEEEEccc
Q 019117 164 -----ILI-FAGAGGHRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKE 206 (346)
Q Consensus 164 -----~~~-~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~ 206 (346)
... +.. +.....+.++|+| +++ ++++-.....|+.++...
T Consensus 295 ~~~g~~~~l~~~--~~~~~p~~ia~~p-~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 295 NNPNTFKQLFTI--ADPSWEFQIFIHP-TGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp GCTTTEEEEEEC--SSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEET
T ss_pred ccccccceeEec--CCCCCceEEEEcC-CCCEEEEEeCCCCEEEEEecCC
Confidence 112 221 2345678999999 777 455555677898877654
No 282
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.36 E-value=1.6e-06 Score=78.12 Aligned_cols=235 Identities=6% Similarity=-0.048 Sum_probs=125.4
Q ss_pred EEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccC----cceeeeecc
Q 019117 51 VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN----EKLHKSFVG 126 (346)
Q Consensus 51 ~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~ 126 (346)
+|+.+....|+..++........+.. ...+..++|. +.+..++++-...+.|..+++.. ......+..
T Consensus 379 ~ll~~~~~~I~~id~~~~~~~~~~~~------~~~p~gla~d--~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~ 450 (699)
T 1n7d_A 379 YLFFTNRHEVRKMTLDRSEYTSLIPN------LRNVVALDTE--VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 450 (699)
T ss_dssp CBCCCCTTC-CEECTTSCCEECCSCC------CTTCCCCEEE--TTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS
T ss_pred eEEecCccceEEEeCCCCcceeeecc------CcceEEEccc--cccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC
Confidence 34444445577777665544333322 1223345554 65552444445568899999875 222222222
Q ss_pred CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecC-CeEEEEEcc
Q 019117 127 HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-NTVKIWSMK 205 (346)
Q Consensus 127 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~iwd~~ 205 (346)
.......|++.+.++.++++-...+.|.++++........+. ........++++|.++.++++-... +.|..+++.
T Consensus 451 ~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~---~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d 527 (699)
T 1n7d_A 451 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR---EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 527 (699)
T ss_dssp CC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECC---CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS
T ss_pred CCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEe---CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC
Confidence 223356788875356666666667899999987544333332 2234567899998455555544333 677777665
Q ss_pred ccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCcccccc
Q 019117 206 EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADIL 282 (346)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 282 (346)
.... .......-.....|+++ +.++++-...+.|..+++...... .+
T Consensus 528 G~~~-----------------------~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~-------~~ 577 (699)
T 1n7d_A 528 GVDI-----------------------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-------TI 577 (699)
T ss_dssp SCCC-----------------------CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE-------EE
T ss_pred CCCe-----------------------eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE-------EE
Confidence 4110 00000111223456665 445555566788999998754311 11
Q ss_pred ccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceee
Q 019117 283 QKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA 329 (346)
Q Consensus 283 ~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 329 (346)
............|++..+ .++++....+.|..++..+++.+..+
T Consensus 578 ~~~~~~~~~P~glavd~~---~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 578 LEDEKRLAHPFSLAVFED---KVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp CCCSSSCSSCCCCEEETT---EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred EecCCcCCCceEeEEECC---EEEEEeCCCCeEEEEEccCCCceEEe
Confidence 111111123344555433 46666677789999998777654433
No 283
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.35 E-value=0.00063 Score=54.90 Aligned_cols=206 Identities=11% Similarity=0.072 Sum_probs=122.6
Q ss_pred EEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCc-------eEEEeeC---CCCEEEEecC-CCeeEEEec
Q 019117 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS-------LVVSASK---DESVRLWNVQ-TGICILIFA 168 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~l~s~~~---d~~i~iwd~~-~~~~~~~~~ 168 (346)
+++.....+-+.+||+ +++.++.+.. +.++.+..-| +-. ++++... +++|.+|++. ....+..+.
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~ 117 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT 117 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence 6666677789999999 8888888864 5677777776 221 3333333 5789999773 222355553
Q ss_pred cc--C-CCC-cceEEEEe--cCCCC-cEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeeccc
Q 019117 169 GA--G-GHR-NEVLSVDF--HPSDI-YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241 (346)
Q Consensus 169 ~~--~-~~~-~~v~~~~~--~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (346)
.. . +.. ..+..+++ +|..+ .+++....+|.+..|++...... ......+..+..- .
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g----------------~~~~~lVR~f~lg-s 180 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNG----------------YISGKKVRAFKMN-S 180 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS----------------CEEEEEEEEEECS-S
T ss_pred ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCC----------------cccceEEEEecCC-C
Confidence 10 0 011 56777887 66334 36888888999999999651100 0012234444433 3
Q ss_pred ceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCcccccccccc--CCCcCeeEEEEe--ecCCcceEEEEcCCCcE
Q 019117 242 YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP--VPECDIWFIKFS--CDFHYNAAAIGNREGKI 315 (346)
Q Consensus 242 ~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s--~~~~~~~l~~~~~dg~i 315 (346)
.+-.+..+ ...|..+-++..|..++.+..... ....+..+. .-...+..|++- +++++-+++++-.++.+
T Consensus 181 q~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~----~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~ 256 (355)
T 3amr_A 181 QTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGS----NGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSY 256 (355)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEEECSTTSCS----CCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEE
T ss_pred CcceEEEcCCCCeEEEecccceEEEEeCCcCCCC----CceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEE
Confidence 56666666 678999988877666664422100 011233322 122468888884 45532245555477899
Q ss_pred EEEEcC-CCCcceeee
Q 019117 316 FVWELQ-SSPPVLIAR 330 (346)
Q Consensus 316 ~iwd~~-~~~~~~~~~ 330 (346)
.+||.+ +.+.+..+.
T Consensus 257 ~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 257 AIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEESSTTCCEEEEEE
T ss_pred EEEECCCCCcEEEEEE
Confidence 999997 555555554
No 284
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.35 E-value=0.0013 Score=58.48 Aligned_cols=233 Identities=6% Similarity=-0.132 Sum_probs=138.4
Q ss_pred cEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCC
Q 019117 50 NVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD 129 (346)
Q Consensus 50 ~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 129 (346)
.+|+.+....|+..++........+.. ..-.....++|. +.+..++++-..++.|..++++.......+.....
T Consensus 7 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~----~~~~~~~~l~~d--~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~ 80 (628)
T 4a0p_A 7 AFLLFSRRADIRRISLETNNNNVAIPL----TGVKEASALDFD--VTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLD 80 (628)
T ss_dssp CEEEEEETTEEEEEESSCTTCEEECCC----CSCSCEEEEEEE--TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred cEEEEEeCCcEEEEECCCCCcceEEEc----CCCCceEEEEEE--CCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCC
Confidence 466666666799999876543222221 011234445554 75552555666788999999876544333333334
Q ss_pred ceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEE-ecCCeEEEEEccccc
Q 019117 130 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC-GMDNTVKIWSMKEFW 208 (346)
Q Consensus 130 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~ 208 (346)
....+++.+.+++++++-...+.|.+.++........+. ..-.....++++|..+.++++- +..+.|...++....
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~---~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~ 157 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW---KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE 157 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEEC---SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEe---CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc
Confidence 567888887456666776777889999986443322222 2345678999998555555554 225677777776521
Q ss_pred eeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEE-eecCeEEEEcCCCCCCCCCCccccccccc
Q 019117 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK-SVDNEIVLWEPKMKEQSPGEGTADILQKY 285 (346)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 285 (346)
...+...-.....|+++ ++.|..+ ...+.|..+|+..... ..+
T Consensus 158 ------------------------~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-------~v~--- 203 (628)
T 4a0p_A 158 ------------------------RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-------EVI--- 203 (628)
T ss_dssp ------------------------CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEE---
T ss_pred ------------------------eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-------EEe---
Confidence 11111223445677776 4544444 5578899999876431 111
Q ss_pred cCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCccee
Q 019117 286 PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI 328 (346)
Q Consensus 286 ~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 328 (346)
.........+++.. + .++.+-...+.|...|..+++....
T Consensus 204 ~~~l~~P~glav~~-~--~ly~tD~~~~~I~~~dk~tg~~~~~ 243 (628)
T 4a0p_A 204 ADDLPHPFGLTQYQ-D--YIYWTDWSRRSIERANKTSGQNRTI 243 (628)
T ss_dssp EECCSCEEEEEEET-T--EEEEEETTTTEEEEEETTTCCSCEE
T ss_pred eccCCCceEEEEEC-C--EEEEecCCCCEEEEEECCCCCceEE
Confidence 11223445677754 3 4666666788999999877765443
No 285
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.33 E-value=0.0017 Score=59.18 Aligned_cols=161 Identities=9% Similarity=-0.010 Sum_probs=95.8
Q ss_pred CCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCc----eeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG----VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (346)
Q Consensus 33 ~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 107 (346)
...+.+|+|.+. .+.++++-...+ |+.+++.... ....+.. .......+++. +.+.+++++-...
T Consensus 423 ~~~~~gl~~d~~---~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~-----~l~~P~GLAvD--~~~~~LY~tD~~~ 492 (791)
T 3m0c_C 423 LRNVVALDTEVA---SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-----DIQAPDGLAVD--WIHSNIYWTDSVL 492 (791)
T ss_dssp CSSEEEEEEETT---TTEEEEEETTTTEEEEEEC--------CEEEECS-----SCSCCCEEEEE--TTTTEEEEEETTT
T ss_pred CCceEEEeeccc---CCeeEEeeccceeEEEEeccCCCCCcceeEEEec-----CCCCcceeeee--ecCCcEEEEecCC
Confidence 445678888872 345555555444 8777765421 1111210 11223345554 6665366666778
Q ss_pred CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCC-CCEEEEecCCCeeEEEecccCCCCcceEEEEecCCC
Q 019117 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD-ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD 186 (346)
Q Consensus 108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 186 (346)
+.|.+.+++.......+.........|++.|..+.++++-... +.|...++. +.....+.. ..-.....|++++.+
T Consensus 493 ~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d-G~~~~~lv~--~~l~~P~GLavD~~~ 569 (791)
T 3m0c_C 493 GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVT--ENIQWPNGITLDLLS 569 (791)
T ss_dssp TEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEEC--SSCSCEEEEEEETTT
T ss_pred CeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC-CCceEEEEe--CCCCCceEEEEecCC
Confidence 8999999875544333333445688999999445555554333 678888886 443333331 234678999999745
Q ss_pred CcEEEEEecCCeEEEEEccc
Q 019117 187 IYRIASCGMDNTVKIWSMKE 206 (346)
Q Consensus 187 ~~~l~s~~~d~~i~iwd~~~ 206 (346)
+.++++-.....|...++..
T Consensus 570 ~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 570 GRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp TEEEEEETTTTEEEEEETTS
T ss_pred CeEEEEeCCCCcEEEEecCC
Confidence 55555555567899998865
No 286
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.33 E-value=3.9e-05 Score=68.92 Aligned_cols=234 Identities=8% Similarity=-0.080 Sum_probs=118.1
Q ss_pred eEEEEEEeecCCCccEEEEEcCCc--EEEEEeccCceeeeEeeeecCCCccce-EEEEEEEcCCCCcEEEEee-cC----
Q 019117 36 LYAVVFNFIDSRYFNVFATVGGNR--VTVYQCLEGGVIAALQSYVDEDKEESF-YTVSWACNVDGIPFLVAGG-IN---- 107 (346)
Q Consensus 36 v~~~~~~p~~~~~~~~la~~~~~~--v~i~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~l~~~~-~d---- 107 (346)
..++++.+ ++.+++.|+.+. +.+||..++.-.. +... ..... ...+. .++|+ +++.|+ .+
T Consensus 245 ~~~~~~~~----~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~----~~~R~~~s~~~--~~dg~-iyv~GG~~~~~~~ 312 (656)
T 1k3i_A 245 CPGISMDG----NGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDM----QVARGYQSSAT--MSDGR-VFTIGGSWSGGVF 312 (656)
T ss_dssp SCEEEECT----TSCEEEECSSSTTCEEEEEGGGTEEEE-CCCC----SSCCSSCEEEE--CTTSC-EEEECCCCCSSSC
T ss_pred cccccCCC----CCCEEEeCCCCCCceEEecCcCCceeE-CCCC----CccccccceEE--ecCCe-EEEEeCcccCCcc
Confidence 33456666 678999998554 9999988764322 2211 11111 11222 26888 888887 34
Q ss_pred -CeEEEEEccCcceeee-----eccCCCceEEEEEeCCCCceEEEeeCCC---------CEEEEecCCCeeEEEecccCC
Q 019117 108 -GIIRVIDVSNEKLHKS-----FVGHGDSINEIRTQPLKPSLVVSASKDE---------SVRLWNVQTGICILIFAGAGG 172 (346)
Q Consensus 108 -g~i~iwd~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~l~s~~~d~---------~i~iwd~~~~~~~~~~~~~~~ 172 (346)
..+.+||..+.+-... ....... ....+.. ++..++.|+.+| .+..||..+............
T Consensus 313 ~~~~e~yd~~t~~W~~~~~~~~~p~~~~~-~~~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~ 390 (656)
T 1k3i_A 313 EKNGEVYSPSSKTWTSLPNAKVNPMLTAD-KQGLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQS 390 (656)
T ss_dssp CCCEEEEETTTTEEEEETTSCSGGGCCCC-TTGGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEE
T ss_pred cccceEeCCCCCcceeCCCcccccccccc-ccceeec-CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcccc
Confidence 5799999987653221 0000000 0011222 444555555444 467788876654433321000
Q ss_pred ------CCcceEEEEecCCCCcEEEEEecCC-----------eEEEEEccccceeeeeceeecCCCCCCCCccceeceEE
Q 019117 173 ------HRNEVLSVDFHPSDIYRIASCGMDN-----------TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 235 (346)
Q Consensus 173 ------~~~~v~~~~~~~~~~~~l~s~~~d~-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (346)
....-.++.|...++++++.|+.++ .|.+||.....-.... .. .
T Consensus 391 ~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-------~~------------~ 451 (656)
T 1k3i_A 391 NRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-------SN------------G 451 (656)
T ss_dssp TTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-------TT------------C
T ss_pred ccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-------cC------------C
Confidence 0112244444433778888887543 5667776552110000 00 0
Q ss_pred EeecccceEEEEe-cCCEEEEEeec-----------CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCc
Q 019117 236 ASVHSNYVDCNRW-LGDFILSKSVD-----------NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY 303 (346)
Q Consensus 236 ~~~~~~~i~~~~~-~~~~l~~~~~d-----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 303 (346)
+......-.++.. .+++++.|+.+ ..+.+||..+.+- ..+..............+.+++
T Consensus 452 mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W-------~~~~~~~~~R~~hs~a~ll~dg-- 522 (656)
T 1k3i_A 452 LYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF-------YKQNPNSIVRVYHSISLLLPDG-- 522 (656)
T ss_dssp CSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE-------EECCCCSSCCCTTEEEEECTTS--
T ss_pred CCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCce-------eecCCCCCccccccHhhcCCCc--
Confidence 0000111222333 47888888864 4688999876541 1222222222233345567888
Q ss_pred ceEEEEcC
Q 019117 304 NAAAIGNR 311 (346)
Q Consensus 304 ~~l~~~~~ 311 (346)
++++.|+.
T Consensus 523 ~v~v~GG~ 530 (656)
T 1k3i_A 523 RVFNGGGG 530 (656)
T ss_dssp CEEEEECC
T ss_pred EEEecCCC
Confidence 68888874
No 287
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.32 E-value=0.00043 Score=56.18 Aligned_cols=198 Identities=12% Similarity=0.040 Sum_probs=108.7
Q ss_pred ceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcC-CCCcEEEEeec-------
Q 019117 35 PLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV-DGIPFLVAGGI------- 106 (346)
Q Consensus 35 ~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~l~~~~~------- 106 (346)
.+..+++.+ .++.++++....++..+|..++. +..+..............+++ ++ +|. +.++-..
T Consensus 81 ~p~gi~~~~---~~g~l~v~d~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~--d~~~G~-l~v~d~~~~~~~~~ 153 (322)
T 2fp8_A 81 RTYDISYNL---QNNQLYIVDCYYHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTV--DQRTGI-VYFTDVSTLYDDRG 153 (322)
T ss_dssp CEEEEEEET---TTTEEEEEETTTEEEEECTTCEE-CEEEESEETTEECSCEEEEEE--CTTTCC-EEEEESCSSCCTTC
T ss_pred CCceEEEcC---CCCcEEEEECCCCEEEEeCCCCE-EEEecccCCCCcccccceEEE--ecCCCE-EEEECCcccccccc
Confidence 467888885 13566666555668888855433 222221111101122344544 48 887 5554322
Q ss_pred ----------CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceE-EEeeCCCCEEEEecCCCe--eEEEecccCCC
Q 019117 107 ----------NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV-VSASKDESVRLWNVQTGI--CILIFAGAGGH 173 (346)
Q Consensus 107 ----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~ 173 (346)
++.|..+|..+++...... .......++++| +++.| ++-...+.|.++++.... ....+.. .
T Consensus 154 ~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~ 228 (322)
T 2fp8_A 154 VQQIMDTSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---I 228 (322)
T ss_dssp HHHHHHHTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---C
T ss_pred cceehcccCCCceEEEEeCCCCEEEEecc-CCccCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---C
Confidence 3678888887665433222 223456899999 66644 444566889999987421 1222221 1
Q ss_pred CcceEEEEecCCCCcEEEEEec----------CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeec----
Q 019117 174 RNEVLSVDFHPSDIYRIASCGM----------DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH---- 239 (346)
Q Consensus 174 ~~~v~~~~~~~~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 239 (346)
.+ ...+++++ +++++++... .+.|..+|... + .+..+...
T Consensus 229 ~g-P~gi~~d~-~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G-~-----------------------~~~~~~~~~g~~ 282 (322)
T 2fp8_A 229 PN-PGNIKRNA-DGHFWVSSSEELDGNMHGRVDPKGIKFDEFG-N-----------------------ILEVIPLPPPFA 282 (322)
T ss_dssp SS-EEEEEECT-TSCEEEEEEEETTSSTTSCEEEEEEEECTTS-C-----------------------EEEEEECCTTTT
T ss_pred CC-CCCeEECC-CCCEEEEecCcccccccCCCccEEEEECCCC-C-----------------------EEEEEECCCCCc
Confidence 23 78899998 7776666544 35677777543 1 11112111
Q ss_pred ccceEEEEec-CCEEEEEeecCeEEEEcCCCC
Q 019117 240 SNYVDCNRWL-GDFILSKSVDNEIVLWEPKMK 270 (346)
Q Consensus 240 ~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~ 270 (346)
...++++.+. +++.++....+.|..+++...
T Consensus 283 ~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 283 GEHFEQIQEHDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp TSCCCEEEEETTEEEEECSSCSEEEEEEC---
T ss_pred cccceEEEEeCCEEEEeecCCCceEEEecccc
Confidence 1234555555 445555556788999988644
No 288
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.31 E-value=0.0011 Score=56.13 Aligned_cols=159 Identities=9% Similarity=0.070 Sum_probs=89.3
Q ss_pred ceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC---C-eE
Q 019117 35 PLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN---G-II 110 (346)
Q Consensus 35 ~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d---g-~i 110 (346)
....|+|+|. +..+.++++-....|+.++..++....... .......+++. ++|+ ++++-... . .+
T Consensus 140 ~P~gvavd~~-s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~------~~~~P~giavd--~dG~-lyVad~~~~~~~~gv 209 (433)
T 4hw6_A 140 NIWRMMFDPN-SNYDDLYWVGQRDAFRHVDFVNQYVDIKTT------NIGQCADVNFT--LNGD-MVVVDDQSSDTNTGI 209 (433)
T ss_dssp CCCEEEECTT-TTTCEEEEECBTSCEEEEETTTTEEEEECC------CCSCEEEEEEC--TTCC-EEEEECCSCTTSEEE
T ss_pred CCceEEEccc-cCCCEEEEEeCCCCEEEEECCCCEEEEeec------CCCCccEEEEC--CCCC-EEEEcCCCCcccceE
Confidence 4568899872 002555555444459999976655433322 22334455554 8998 66655421 1 23
Q ss_pred EEEEccCccee-eeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCc-
Q 019117 111 RVIDVSNEKLH-KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY- 188 (346)
Q Consensus 111 ~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~- 188 (346)
...+...+... ..+. .-.....+++.|.++.++++-..++.|..+|..++.....+... +.......++|+| +++
T Consensus 210 ~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~-~~~~~~~~ia~dp-dG~~ 286 (433)
T 4hw6_A 210 YLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMM-DTKGSNFHIVWHP-TGDW 286 (433)
T ss_dssp EEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEEC-SCCSSCEEEEECT-TSSE
T ss_pred EEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEecc-CCCCCcccEEEeC-CCCE
Confidence 33333222110 1222 23345678888845555556556788999998877653332211 1223345799999 666
Q ss_pred EEEEEecCCeEEEEEccc
Q 019117 189 RIASCGMDNTVKIWSMKE 206 (346)
Q Consensus 189 ~l~s~~~d~~i~iwd~~~ 206 (346)
++++-...+.|..+++..
T Consensus 287 LYvad~~~~~I~~~~~d~ 304 (433)
T 4hw6_A 287 AYIIYNGKHCIYRVDYNR 304 (433)
T ss_dssp EEEEETTTTEEEEEEBCT
T ss_pred EEEEeCCCCEEEEEeCCC
Confidence 556666678899988763
No 289
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.22 E-value=0.0013 Score=53.06 Aligned_cols=199 Identities=10% Similarity=0.150 Sum_probs=117.1
Q ss_pred EEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEE--cCCCCc--EEEEe-ec--CCeE
Q 019117 38 AVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWAC--NVDGIP--FLVAG-GI--NGII 110 (346)
Q Consensus 38 ~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~--~l~~~-~~--dg~i 110 (346)
++-.+|.++....++++.-.+++.+||+ +++.+..+.. +.+..+.+.+ ...|+. ++++. .. +++|
T Consensus 30 avw~~~~dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-------g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l 101 (355)
T 3amr_A 30 AIWLDPKTPQNSKLITTNKKSGLVVYSL-DGKMLHSYNT-------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTI 101 (355)
T ss_dssp EEECCSSCGGGCEEEEEETTTEEEEEET-TSCEEEEECC-------SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEE
T ss_pred cEecCCCCCCccEEEEEcCCCCEEEEcC-CCcEEEEccC-------CCcccEEEecccccCCceEeEEEEeCCCCCCCeE
Confidence 4556676665555666666666999998 7887776641 2333344332 123331 22333 33 5789
Q ss_pred EEEEcc--Ccceeeeecc------CC-CceEEEEE--eCCCCc-eEEEeeCCCCEEEEecC-------CCeeEEEecccC
Q 019117 111 RVIDVS--NEKLHKSFVG------HG-DSINEIRT--QPLKPS-LVVSASKDESVRLWNVQ-------TGICILIFAGAG 171 (346)
Q Consensus 111 ~iwd~~--~~~~~~~~~~------~~-~~v~~~~~--~~~~~~-~l~s~~~d~~i~iwd~~-------~~~~~~~~~~~~ 171 (346)
.+|++. +++ +..+.. .. ..+..+++ +|..+. ++++...+|.+..|++. +.+.++.+.
T Consensus 102 ~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~--- 177 (355)
T 3amr_A 102 EIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK--- 177 (355)
T ss_dssp EEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE---
T ss_pred EEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec---
Confidence 999773 333 433311 11 45666777 663343 67788888999999983 346677776
Q ss_pred CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE--eecccceEEEEec
Q 019117 172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA--SVHSNYVDCNRWL 249 (346)
Q Consensus 172 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~ 249 (346)
..+.+..+...+ ....|+.+-++.-|..++.+..... ....+... ..-...+..|+..
T Consensus 178 -lgsq~EgcvvDd-~~g~Lyv~eEd~GIw~~da~p~~~~------------------~~~~v~~~~~g~l~aDvEGLai~ 237 (355)
T 3amr_A 178 -MNSQTEGMAADD-EYGRLYIAEEDEAIWKFSAEPDGGS------------------NGTVIDRADGRHLTRDIEGLTIY 237 (355)
T ss_dssp -CSSCEEEEEEET-TTTEEEEEETTTEEEEEECSTTSCS------------------CCEEEEEBSSSSBCSCEEEEEEE
T ss_pred -CCCCcceEEEcC-CCCeEEEecccceEEEEeCCcCCCC------------------CceEEEEecCCccccCcceEEEE
Confidence 556888999997 7778888888866655554431100 00111111 1111245555552
Q ss_pred ----CC-EEEEEe-ecCeEEEEcCC
Q 019117 250 ----GD-FILSKS-VDNEIVLWEPK 268 (346)
Q Consensus 250 ----~~-~l~~~~-~d~~i~iwd~~ 268 (346)
++ +|++++ .+++..+||..
T Consensus 238 ~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 238 YAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp ECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred ecCCCCEEEEEEcCCCCEEEEEECC
Confidence 33 666665 57899999996
No 290
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.17 E-value=0.0014 Score=52.40 Aligned_cols=162 Identities=9% Similarity=0.071 Sum_probs=100.1
Q ss_pred eEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCC--CccceEEEEEEE---cCCCCcEEEEee----
Q 019117 36 LYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDED--KEESFYTVSWAC---NVDGIPFLVAGG---- 105 (346)
Q Consensus 36 v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~---~~~~~~~l~~~~---- 105 (346)
--+++|.+ .++.++++.-..+ |..|+...+.... + .+.... .........+.+ .++++ ++++..
T Consensus 15 PE~~~wd~---~~g~~~vs~l~~g~V~~~~~~~~~~~~-~-~~~~~s~~g~~~~~~sGl~~~~~D~~gr-L~vv~~~~~a 88 (334)
T 2p9w_A 15 PEDTIYDR---TRQVFYQSNLYKGRIEVYNPKTQSHFN-V-VIDGASSNGDGEQQMSGLSLLTHDNSKR-LFAVMKNAKS 88 (334)
T ss_dssp CSCEEEET---TTTEEEEEETTTTEEEEECTTTCCEEE-E-CCTTTCCSSCCSEEEEEEEESSSSSCCE-EEEEEEETTT
T ss_pred CcCccCcC---CCCEEEEEeccCCEEEEEcCCCCeEEE-E-ecCCccccCCCcceeeEEEEeccCCCCc-EEEEEccccc
Confidence 34678886 2345555554555 9999976444332 2 221100 122233344455 47776 666543
Q ss_pred ---------cCCeEEEEEcc---Ccceeeeec--cC-----------CCceEEEEEeCCCCceEEEeeCC-CCEEEEecC
Q 019117 106 ---------INGIIRVIDVS---NEKLHKSFV--GH-----------GDSINEIRTQPLKPSLVVSASKD-ESVRLWNVQ 159 (346)
Q Consensus 106 ---------~dg~i~iwd~~---~~~~~~~~~--~~-----------~~~v~~~~~~~~~~~~l~s~~~d-~~i~iwd~~ 159 (346)
.+..|..+|+. +++.+.... .. .....+++..+ +++..++++.. +.|...+..
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTT
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCC
Confidence 26789999998 777665442 11 12478999999 88888888887 777777765
Q ss_pred CCeeEEEecc-c--CCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117 160 TGICILIFAG-A--GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (346)
Q Consensus 160 ~~~~~~~~~~-~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 206 (346)
++.+..+.. . .......+.|+++| ++++|++....|.+..+|+..
T Consensus 168 -G~~~~~~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 168 -GKTVSTFAWESGNGGQRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp -SCCEEEEEECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSEEEEECSS
T ss_pred -CCEEeeeeecCCCcccccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCC
Confidence 333333221 0 01223467999999 777777776699999999884
No 291
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.12 E-value=2.4e-05 Score=70.51 Aligned_cols=159 Identities=9% Similarity=-0.026 Sum_probs=89.6
Q ss_pred CceEEEEEEeecCCCccEEEEE-cCCc-EEEEEecc----CceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC
Q 019117 34 RPLYAVVFNFIDSRYFNVFATV-GGNR-VTVYQCLE----GGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~-~~~~-v~i~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 107 (346)
..+..|+|.+ .+..|..+ ...+ |..+++.. ......+.. .......+++ ++.+..++++-...
T Consensus 406 ~~p~gla~d~----~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~-----~~~~P~glav--D~~~g~LY~tD~~~ 474 (699)
T 1n7d_A 406 RNVVALDTEV----ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-----DIQAPDGLAV--DWIHSNIYWTDSVL 474 (699)
T ss_dssp TTCCCCEEET----TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS-----CC--CCCEEC--CCSSSBCEECCTTT
T ss_pred cceEEEcccc----ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC-----CCCCcceEEE--EeeCCcEEEEeccC
Confidence 3456788887 33444444 3333 88888764 111111110 0111222443 34443255665667
Q ss_pred CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCC-CCEEEEecCCCeeEEEecccCCCCcceEEEEecCCC
Q 019117 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD-ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD 186 (346)
Q Consensus 108 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 186 (346)
+.|.++++........+.........|++.|.++.++++-... +.|.++++.. .....+.. ..-...+.|+|+|.+
T Consensus 475 ~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~~--~~l~~PnGlavd~~~ 551 (699)
T 1n7d_A 475 GTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVT--ENIQWPNGITLDLLS 551 (699)
T ss_dssp SCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEESC--SSCSSCCCEEECTTT
T ss_pred CeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEEe--CCCCCccEEEEeccC
Confidence 8899999875543333333334567889998445555544333 6788887753 33333321 123456789999855
Q ss_pred CcEEEEEecCCeEEEEEccc
Q 019117 187 IYRIASCGMDNTVKIWSMKE 206 (346)
Q Consensus 187 ~~~l~s~~~d~~i~iwd~~~ 206 (346)
+.++++-...+.|..+++..
T Consensus 552 ~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 552 GRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp CCEEEEETTTTEEEEECSSS
T ss_pred CEEEEEecCCCeEEEEccCC
Confidence 67677767778899999865
No 292
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.12 E-value=0.0019 Score=51.72 Aligned_cols=233 Identities=12% Similarity=0.064 Sum_probs=115.4
Q ss_pred ccEEEEEc-CC------cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC-----CeEEEEEcc
Q 019117 49 FNVFATVG-GN------RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN-----GIIRVIDVS 116 (346)
Q Consensus 49 ~~~la~~~-~~------~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~ 116 (346)
+.+++.|+ .+ .+.+||..+.+- ..+..... .... . .+.. .+++ +++.|+.+ ..+.+||+.
T Consensus 15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~W-~~~~~~p~--~r~~-~-~~~~--~~~~-l~v~GG~~~~~~~~~~~~~d~~ 86 (301)
T 2vpj_A 15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEW-SFLPSITR--KRRY-V-ASVS--LHDR-IYVIGGYDGRSRLSSVECLDYT 86 (301)
T ss_dssp EEEEEECCEETTTEECCCEEEEETTTTEE-EECCCCSS--CCBS-C-EEEE--ETTE-EEEECCBCSSCBCCCEEEEETT
T ss_pred CEEEEEeCccCCCcceeEEEEEcCCCCeE-EeCCCCCh--hhcc-c-cEEE--ECCE-EEEEcCCCCCccCceEEEEECC
Confidence 46677776 22 388888766542 22222111 1111 1 1122 3455 77777754 468899987
Q ss_pred Ccc---e--eeeeccCCCceEEEEEeCCCCceEEEeeCCC-----CEEEEecCCCeeEEEecccCCCCcceEEEEecCCC
Q 019117 117 NEK---L--HKSFVGHGDSINEIRTQPLKPSLVVSASKDE-----SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD 186 (346)
Q Consensus 117 ~~~---~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 186 (346)
+.+ - +..+.........+.+ ++.+++.|+.++ .+.+||+.+.+-...-... ...... +++.. +
T Consensus 87 ~~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~-~~~~~--~ 159 (301)
T 2vpj_A 87 ADEDGVWYSVAPMNVRRGLAGATTL---GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ-TAREGA-GLVVA--S 159 (301)
T ss_dssp CCTTCCCEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS-SCCBSC-EEEEE--T
T ss_pred CCCCCeeEECCCCCCCccceeEEEE---CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCC-CCcccc-eEEEE--C
Confidence 765 2 2222221222222222 567777776543 5888998876543322111 111112 22222 5
Q ss_pred CcEEEEEecC-----CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeec--
Q 019117 187 IYRIASCGMD-----NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVD-- 259 (346)
Q Consensus 187 ~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d-- 259 (346)
+.+++.|+.+ ..+.+||+.+..-.... .+......-.++.+.+.+++.|+.+
T Consensus 160 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~---------------------~~p~~r~~~~~~~~~~~i~v~GG~~~~ 218 (301)
T 2vpj_A 160 GVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT---------------------PMATKRSGAGVALLNDHIYVVGGFDGT 218 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEEEC---------------------CCSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred CEEEEECCCCCCcccceEEEEeCCCCcEEeCC---------------------CCCcccccceEEEECCEEEEEeCCCCC
Confidence 6777777765 35788888763211110 0000001112233346667777664
Q ss_pred ---CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC-----CcEEEEEcCCCCccee
Q 019117 260 ---NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE-----GKIFVWELQSSPPVLI 328 (346)
Q Consensus 260 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~ 328 (346)
..+.+||+.+.+- ..+..+....... .+...++ .+++.|+.+ ..+.+||+++.+-...
T Consensus 219 ~~~~~v~~yd~~~~~W-------~~~~~~p~~r~~~--~~~~~~~--~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 284 (301)
T 2vpj_A 219 AHLSSVEAYNIRTDSW-------TTVTSMTTPRCYV--GATVLRG--RLYAIAGYDGNSLLSSIECYDPIIDSWEVV 284 (301)
T ss_dssp SBCCCEEEEETTTTEE-------EEECCCSSCCBSC--EEEEETT--EEEEECCBCSSSBEEEEEEEETTTTEEEEE
T ss_pred cccceEEEEeCCCCcE-------EECCCCCCcccce--eEEEECC--EEEEEcCcCCCcccccEEEEcCCCCeEEEc
Confidence 4688999887641 1122222111111 1223355 577777655 4688999988764433
No 293
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.06 E-value=0.0051 Score=54.67 Aligned_cols=233 Identities=9% Similarity=-0.016 Sum_probs=124.7
Q ss_pred cEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcce-eeeeccCC
Q 019117 50 NVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL-HKSFVGHG 128 (346)
Q Consensus 50 ~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~ 128 (346)
.+|+-+....|+..++........+.. ........+++. +.+..++++-...+.|..++++.... ...+...-
T Consensus 10 ~~~~~~~~~~I~~i~~~~~~~~~~~~~----~~~~~~~~ld~~--~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~ 83 (619)
T 3s94_A 10 PLLLYANRRDLRLVDATNGKENATIVV----GGLEDAAAVDFV--FSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL 83 (619)
T ss_dssp CCEEEECSSBEEEECCC---------C----BCCSCEEEEEEE--TTTTEEEEEETTTTEEEEEEC-----CEEEECSSC
T ss_pred ceEEEeccccEEEEeCCCCcceEEEEE----cCCCceEEEEEE--eCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCC
Confidence 356666667788888765421111110 012234445554 65552444545568899998875532 22333333
Q ss_pred CceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe-cCCeEEEEEcccc
Q 019117 129 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEF 207 (346)
Q Consensus 129 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~ 207 (346)
.....+++.+.+++++++-...+.|.+.++........+. ..-.....|+++|.++.++++-- ..+.|...++...
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~---~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~ 160 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW---QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS 160 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEe---CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC
Confidence 5688999998556666676778899999987443322232 23456789999984565555542 2456766666541
Q ss_pred ceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEE-EEEeecCeEEEEcCCCCCCCCCCcccccccc
Q 019117 208 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADILQK 284 (346)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 284 (346)
. ........-.....|+++ ++.| ++-...+.|..+|+....... ..
T Consensus 161 ~-----------------------~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~------~~-- 209 (619)
T 3s94_A 161 S-----------------------RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA------VV-- 209 (619)
T ss_dssp S-----------------------CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------
T ss_pred c-----------------------eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEE------EE--
Confidence 1 011111122345667776 4444 444556789999987643211 11
Q ss_pred ccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcc
Q 019117 285 YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV 326 (346)
Q Consensus 285 ~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 326 (346)
........++++..+ .++.+-...+.|...|..+++..
T Consensus 210 -~~~~~~P~gi~~~~~---~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 210 -KGSLPHPFALTLFED---ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp -------CCCEEESSS---EEEEECTTTCSEEEEESSSCCCC
T ss_pred -eCCCCCceEEEEeCC---EEEEecCCCCEEEEEECCCCccc
Confidence 111122345666543 35666667788999998887643
No 294
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.02 E-value=0.0026 Score=53.82 Aligned_cols=151 Identities=11% Similarity=0.067 Sum_probs=87.0
Q ss_pred EEEEEEEcC-CCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeC-CC----CEEEEecCC
Q 019117 87 YTVSWACNV-DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK-DE----SVRLWNVQT 160 (346)
Q Consensus 87 ~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~----~i~iwd~~~ 160 (346)
..+++. | ++. .|+.+...+.|+.+|+..++...... .......++|++ +++.|+.+.. ++ .+...+. .
T Consensus 140 ~~lavd--p~~~g-~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~ 213 (430)
T 3tc9_A 140 VWLSFD--PKNHN-HLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-E 213 (430)
T ss_dssp CEEEEE--TTEEE-EEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-G
T ss_pred CEEEEC--CCCCC-eEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-C
Confidence 345554 6 344 56665555889999987766444333 455678999999 7774544443 22 2333332 3
Q ss_pred CeeE--EEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee
Q 019117 161 GICI--LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 238 (346)
Q Consensus 161 ~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (346)
+... ..+. .......++++|.++.++++-..++.|..++....... .+....
T Consensus 214 g~~~~~~~l~----~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~---------------------~~~~~~- 267 (430)
T 3tc9_A 214 SGFKVITELT----KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT---------------------PLFTIQ- 267 (430)
T ss_dssp GTSCSEEEEE----ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE---------------------EEEECS-
T ss_pred Cceeeeeeec----cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE---------------------EEEEcC-
Confidence 3222 2222 12345678899856777777667789999998752210 011111
Q ss_pred cccceEEEEec--CCE-EEEEeecCeEEEEcCCC
Q 019117 239 HSNYVDCNRWL--GDF-ILSKSVDNEIVLWEPKM 269 (346)
Q Consensus 239 ~~~~i~~~~~~--~~~-l~~~~~d~~i~iwd~~~ 269 (346)
....-..++++ +++ +++-...+.|..++.+.
T Consensus 268 ~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 268 DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 11235567777 774 44445678899987653
No 295
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.97 E-value=0.0083 Score=53.40 Aligned_cols=200 Identities=8% Similarity=-0.092 Sum_probs=115.6
Q ss_pred CceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117 34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 112 (346)
..+..|+|++ .++.++.+-..++ |..+++........+.. .......+++. +.+.++.++-...+.|.+
T Consensus 37 ~~~~~l~~d~---~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~-----g~~~P~GlAvD--~~~~~LY~tD~~~~~I~v 106 (628)
T 4a0p_A 37 KEASALDFDV---TDNRIYWTDISLKTISRAFMNGSALEHVVEF-----GLDYPEGMAVD--WLGKNLYWADTGTNRIEV 106 (628)
T ss_dssp SCEEEEEEET---TTTEEEEEETTTTEEEEEETTSCSCEEEECS-----SCSCCCEEEEE--TTTTEEEEEETTTTEEEE
T ss_pred CceEEEEEEC---CCCEEEEEECCCCeEEEEECCCCCcEEEEeC-----CCCCcceEEEE--eCCCEEEEEECCCCEEEE
Confidence 4577999998 2355666655555 88887654333222221 11223345554 555536666666789999
Q ss_pred EEccCcceeeeeccCCCceEEEEEeCCCCceEEEe-eCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEE
Q 019117 113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSA-SKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA 191 (346)
Q Consensus 113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 191 (346)
.+++.......+...-.....|++.|..+.++++- +..+.|...++.... ...+. ..-.....|++++.++.+++
T Consensus 107 ~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~---~~~~~P~GlalD~~~~~LY~ 182 (628)
T 4a0p_A 107 SKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLV---PNVGRANGLTIDYAKRRLYW 182 (628)
T ss_dssp EETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEE---CSCSSEEEEEEETTTTEEEE
T ss_pred EecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEE---CCCCCcceEEEccccCEEEE
Confidence 99875443222323445678999999445444443 235677777776433 33333 24567889999984455555
Q ss_pred EEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEe-ecCeEEEEcCCCC
Q 019117 192 SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKS-VDNEIVLWEPKMK 270 (346)
Q Consensus 192 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~-~d~~i~iwd~~~~ 270 (346)
+-...+.|..+|+..... ..+.........+++.++.+.... ..+.|...|..++
T Consensus 183 aD~~~~~I~~~d~dG~~~------------------------~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 183 TDLDTNLIESSNMLGLNR------------------------EVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp EETTTTEEEEEETTSCSC------------------------EEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred EECCCCEEEEEcCCCCce------------------------EEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCC
Confidence 556677899999876211 111112223345665544444443 4677888886665
Q ss_pred C
Q 019117 271 E 271 (346)
Q Consensus 271 ~ 271 (346)
+
T Consensus 239 ~ 239 (628)
T 4a0p_A 239 Q 239 (628)
T ss_dssp C
T ss_pred C
Confidence 4
No 296
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.95 E-value=0.0046 Score=49.63 Aligned_cols=232 Identities=9% Similarity=0.019 Sum_probs=115.8
Q ss_pred ccEEEEEcCC---cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC----CeEEEEEccCccee
Q 019117 49 FNVFATVGGN---RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN----GIIRVIDVSNEKLH 121 (346)
Q Consensus 49 ~~~la~~~~~---~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~ 121 (346)
+.+++.|+.+ .+.+||..+++-. .+..... .... . .+.. .+++ +++.|+.+ ..+.+||+.+.+-.
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~-~~~~~p~--~r~~-~-~~~~--~~~~-lyv~GG~~~~~~~~~~~~d~~~~~W~ 83 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWT-DIRCPFE--KRRD-A-ACVF--WDNV-VYILGGSQLFPIKRMDCYNVVKDSWY 83 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEE-ECCCCSC--CCBS-C-EEEE--ETTE-EEEECCBSSSBCCEEEEEETTTTEEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEe-cCCCCCc--ccce-e-EEEE--ECCE-EEEEeCCCCCCcceEEEEeCCCCeEE
Confidence 3566667654 3899997765432 2222111 1111 1 1122 3455 77777754 67889998876532
Q ss_pred --eeeccCCCceEEEEEeCCCCceEEEeeCC------CCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEE
Q 019117 122 --KSFVGHGDSINEIRTQPLKPSLVVSASKD------ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC 193 (346)
Q Consensus 122 --~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 193 (346)
..+.........+.+ ++.+++.|+.+ ..+.+||+.+.+-...-... ...... +++.. ++.+++.|
T Consensus 84 ~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~-~~~~~--~~~iyv~G 156 (306)
T 3ii7_A 84 SKLGPPTPRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSML-TQRCSH-GMVEA--NGLIYVCG 156 (306)
T ss_dssp EEECCSSCCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCS-SCCBSC-EEEEE--TTEEEEEC
T ss_pred ECCCCCccccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCc-CCccee-EEEEE--CCEEEEEC
Confidence 222221222222222 56777777765 45889999877543321110 111111 22232 56677777
Q ss_pred ec---------CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeec-----
Q 019117 194 GM---------DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVD----- 259 (346)
Q Consensus 194 ~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d----- 259 (346)
+. -..+.+||+.+..-.... .+......-..+.+.+.+++.|+.+
T Consensus 157 G~~~~~~~~~~~~~~~~yd~~~~~W~~~~---------------------~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~ 215 (306)
T 3ii7_A 157 GSLGNNVSGRVLNSCEVYDPATETWTELC---------------------PMIEARKNHGLVFVKDKIFAVGGQNGLGGL 215 (306)
T ss_dssp CEESCTTTCEECCCEEEEETTTTEEEEEC---------------------CCSSCCBSCEEEEETTEEEEECCEETTEEB
T ss_pred CCCCCCCcccccceEEEeCCCCCeEEECC---------------------CccchhhcceEEEECCEEEEEeCCCCCCCC
Confidence 64 245788888773211110 0000001112223336667777654
Q ss_pred CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC-----CcEEEEEcCCCCcce
Q 019117 260 NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE-----GKIFVWELQSSPPVL 327 (346)
Q Consensus 260 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~ 327 (346)
..+.+||+.+.+- ..+..+.........+.+ ++ .+++.|+.+ ..+.+||+.+.+-..
T Consensus 216 ~~~~~yd~~~~~W-------~~~~~~p~~r~~~~~~~~--~~--~i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 277 (306)
T 3ii7_A 216 DNVEYYDIKLNEW-------KMVSPMPWKGVTVKCAAV--GS--IVYVLAGFQGVGRLGHILEYNTETDKWVA 277 (306)
T ss_dssp CCEEEEETTTTEE-------EECCCCSCCBSCCEEEEE--TT--EEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred ceEEEeeCCCCcE-------EECCCCCCCccceeEEEE--CC--EEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence 4588899887541 122222222222222222 45 577777744 468999998876443
No 297
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.93 E-value=0.0035 Score=50.19 Aligned_cols=229 Identities=11% Similarity=0.094 Sum_probs=111.7
Q ss_pred ccEEEEEcCC-----cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC-----CeEEEEEccCc
Q 019117 49 FNVFATVGGN-----RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN-----GIIRVIDVSNE 118 (346)
Q Consensus 49 ~~~la~~~~~-----~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 118 (346)
+.+++.|+.+ .+.+||..+.. ...+..... .... ..+ .. .+++ +++.|+.+ ..+.+||..+.
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~-W~~~~~~p~--~r~~-~~~-~~--~~~~-lyv~GG~~~~~~~~~~~~~d~~~~ 87 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEER-WHQVAELPS--RRCR-AGM-VY--MAGL-VFAVGGFNGSLRVRTVDSYDPVKD 87 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTE-EEEECCCSS--CCBS-CEE-EE--ETTE-EEEESCBCSSSBCCCEEEEETTTT
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCc-EeEcccCCc--cccc-ceE-EE--ECCE-EEEEeCcCCCccccceEEECCCCC
Confidence 3566666542 38888877654 333322111 1111 112 22 2455 77777654 35888998776
Q ss_pred cee--eeeccCCCceEEEEEeCCCCceEEEeeCCC-----CEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEE
Q 019117 119 KLH--KSFVGHGDSINEIRTQPLKPSLVVSASKDE-----SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA 191 (346)
Q Consensus 119 ~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 191 (346)
+-. ..+.........+.+ ++.+++.|+.++ .+.+||+.+.+-...-.. ...... .+++.. ++.+++
T Consensus 88 ~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~-p~~r~~-~~~~~~--~~~iyv 160 (302)
T 2xn4_A 88 QWTSVANMRDRRSTLGAAVL---NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPM-NTRRSS-VGVGVV--GGLLYA 160 (302)
T ss_dssp EEEEECCCSSCCBSCEEEEE---TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCC-SSCCBS-CEEEEE--TTEEEE
T ss_pred ceeeCCCCCccccceEEEEE---CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCC-CCcccC-ceEEEE--CCEEEE
Confidence 522 222221122222222 467777777553 477888877654332111 111111 223333 566777
Q ss_pred EEecC-------CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeec-----
Q 019117 192 SCGMD-------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVD----- 259 (346)
Q Consensus 192 s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d----- 259 (346)
.|+.+ ..+.+||+.+..-.... .+......-..+.+.+.+++.|+.+
T Consensus 161 ~GG~~~~~~~~~~~~~~yd~~~~~W~~~~---------------------~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 219 (302)
T 2xn4_A 161 VGGYDVASRQCLSTVECYNATTNEWTYIA---------------------EMSTRRSGAGVGVLNNLLYAVGGHDGPLVR 219 (302)
T ss_dssp ECCEETTTTEECCCEEEEETTTTEEEEEC---------------------CCSSCCBSCEEEEETTEEEEECCBSSSSBC
T ss_pred EeCCCCCCCccccEEEEEeCCCCcEEECC---------------------CCccccccccEEEECCEEEEECCCCCCccc
Confidence 77653 34788888763211110 0000001112233346677777664
Q ss_pred CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCC-----cEEEEEcCCCC
Q 019117 260 NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG-----KIFVWELQSSP 324 (346)
Q Consensus 260 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg-----~i~iwd~~~~~ 324 (346)
..+.+||+.+.+- ..+..+......- . +...++ .+++.|+.++ .+.+||+.+.+
T Consensus 220 ~~~~~yd~~~~~W-------~~~~~~~~~r~~~-~-~~~~~~--~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 220 KSVEVYDPTTNAW-------RQVADMNMCRRNA-G-VCAVNG--LLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CCEEEEETTTTEE-------EEECCCSSCCBSC-E-EEEETT--EEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred ceEEEEeCCCCCE-------eeCCCCCCccccC-e-EEEECC--EEEEECCcCCCcccccEEEEcCCCCe
Confidence 3688999877541 1121121111111 1 222355 5777777553 48999998765
No 298
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.83 E-value=0.023 Score=54.24 Aligned_cols=179 Identities=15% Similarity=0.134 Sum_probs=104.4
Q ss_pred EEEEEeccCceeeeEeeeecCCCccceEEEEEE-EcCCCCcEEEEee----------cCCeEEEEEccCcceeeee-ccC
Q 019117 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWA-CNVDGIPFLVAGG----------INGIIRVIDVSNEKLHKSF-VGH 127 (346)
Q Consensus 60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~-~~~ 127 (346)
|++.|..+.+.+.. +... ..+.+.+++.. +..+.+.+|++|. ..|.|.+|++..++..... ...
T Consensus 809 i~lidp~t~~~i~~---~~l~-~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v 884 (1158)
T 3ei3_A 809 LLIIDQHTFEVLHA---HQFL-QNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEV 884 (1158)
T ss_dssp EEEEETTTCCEEEE---EECC-TTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEeCCCCeEEEE---EeCC-CCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEc
Confidence 55555444443322 2222 34555555543 3333344888886 3588999999755432221 124
Q ss_pred CCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEcccc
Q 019117 128 GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF 207 (346)
Q Consensus 128 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 207 (346)
.++|++++--. +.++++. ..+|++|++...+.+. ... .+-..|..+.... .+++++.|..-..|.++..+..
T Consensus 885 ~g~v~al~~~~--g~Lla~i--g~~l~vy~l~~~~~L~-~~~--~~~~~i~~~~l~~-~~~~I~vgD~~~Sv~~~~y~~~ 956 (1158)
T 3ei3_A 885 KGAVYSMVEFN--GKLLASI--NSTVRLYEWTTEKELR-TEC--NHYNNIMALYLKT-KGDFILVGDLMRSVLLLAYKPM 956 (1158)
T ss_dssp SSCEEEEEEET--TEEEEEE--TTEEEEEEECTTSCEE-EEE--EECCCSCEEEEEE-ETTEEEEEESSBCEEEEEEETT
T ss_pred CCcCEEEeeeC--CEEEEEc--CCEEEEEECCCCceEE-EEe--eccccEEEEEEec-cCCEEEEEEhhheEEEEEEEcC
Confidence 67888887653 4444433 3789999998665444 110 1111133222222 3567888888777777655431
Q ss_pred ceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEcCCCC
Q 019117 208 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMK 270 (346)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~ 270 (346)
.. ......-..++.+++++.+- .+.++.+..+|.+.+......
T Consensus 957 ~~--------------------~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 957 EG--------------------NFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp TT--------------------EEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECTT
T ss_pred CC--------------------eEEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEecCCC
Confidence 11 22233334567788888885 778888999999999987653
No 299
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.71 E-value=0.012 Score=47.09 Aligned_cols=169 Identities=10% Similarity=-0.006 Sum_probs=100.2
Q ss_pred eccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEE-eccc---CCCCcceEEEEe---cCCCCcEEEEEe--
Q 019117 124 FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI-FAGA---GGHRNEVLSVDF---HPSDIYRIASCG-- 194 (346)
Q Consensus 124 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~---~~~~~~v~~~~~---~~~~~~~l~s~~-- 194 (346)
+........+++|.+.++.++++.-..++|..||...+..... +... ......+..|.| .| ++.++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~ 86 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNA 86 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEET
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccc
Confidence 3334445568899884444444444789999999975543333 2210 011224689999 68 677777543
Q ss_pred -----------cCCeEEEEEcc---ccceeeeeceeecCCCCCCCCccceeceEEEe--ec-----------ccceEEEE
Q 019117 195 -----------MDNTVKIWSMK---EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS--VH-----------SNYVDCNR 247 (346)
Q Consensus 195 -----------~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----------~~~i~~~~ 247 (346)
.+..|..||+. +.+ .+.... .. ......++
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~-----------------------~~~~~dL~~~~~~~~~~~g~~~~~~nDva 143 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSK-----------------------PVWSVNFEKVQDEFEKKAGKRPFGVVQSA 143 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCC-----------------------CSEEEESHHHHHHHHHHHSSCCEEEEEEE
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCC-----------------------EEEEecCccccccccccccccccCCceeE
Confidence 26789999998 422 111111 10 11355666
Q ss_pred ec--CCEEEEEeec-CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117 248 WL--GDFILSKSVD-NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (346)
Q Consensus 248 ~~--~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~ 322 (346)
.+ |+..++++.. +.|...+.+........ ............+.|+++|++ .+|++...+|.|..+|+.+
T Consensus 144 vD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~----~~~~~~~~~~G~nGIv~~pdg--~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 144 QDRDGNSYVAFALGMPAIARVSADGKTVSTFA----WESGNGGQRPGYSGITFDPHS--NKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp ECTTSCEEEEEEESSCEEEEECTTSCCEEEEE----ECCCCSSSCCSCSEEEEETTT--TEEEEESSSSSEEEEECSS
T ss_pred ECCCCCEEEeCCCCCCeEEEEeCCCCEEeeee----ecCCCcccccCcceEEEeCCC--CEEEEEcCCCeEEEEcCCC
Confidence 66 8888888888 88877777654210000 000001122346789999999 5666665599999999874
No 300
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.68 E-value=0.014 Score=47.28 Aligned_cols=253 Identities=9% Similarity=0.007 Sum_probs=122.2
Q ss_pred cccceeeeeecccCCCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCC
Q 019117 19 KKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI 98 (346)
Q Consensus 19 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (346)
.-..++.... .....+.+|.|.+ .+..++++. .+..+.....++....+.. ........+..+.+. + +.
T Consensus 23 ~g~~W~~~~~--~~~~~~~~v~~~~----~~~~~~~G~-~g~i~~s~DgG~tW~~~~~-~~~~~~~~~~~i~~~--~-~~ 91 (327)
T 2xbg_A 23 DYNPWEAIQL--PTTATILDMSFID----RHHGWLVGV-NATLMETRDGGQTWEPRTL-VLDHSDYRFNSVSFQ--G-NE 91 (327)
T ss_dssp SSCCEEEEEC--SCSSCEEEEEESS----SSCEEEEET-TTEEEEESSTTSSCEECCC-CCSCCCCEEEEEEEE--T-TE
T ss_pred CCCCceEeec--CCCCcEEEEEECC----CCcEEEEcC-CCeEEEeCCCCCCCeECCC-CCCCCCccEEEEEec--C-Ce
Confidence 3455654432 2345799999875 456777664 4433333333443333321 111123356666653 5 43
Q ss_pred cEEEEeecCCeEEEEEccCcceeeeec---cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCc
Q 019117 99 PFLVAGGINGIIRVIDVSNEKLHKSFV---GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN 175 (346)
Q Consensus 99 ~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 175 (346)
.++ ++..+.|.. ..+.++.-..+. .+.+.+..+.+.+ ++..++.+ .++.|.. ....++.-..... ....
T Consensus 92 -~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~--~~~~ 163 (327)
T 2xbg_A 92 -GWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKNWQALVQ--EAIG 163 (327)
T ss_dssp -EEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSSEEEEEC--SCCC
T ss_pred -EEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCCCEEeec--CCCc
Confidence 444 455665443 223343222221 2335577888776 55555554 4565432 2223444333332 3456
Q ss_pred ceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEE
Q 019117 176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFIL 254 (346)
Q Consensus 176 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~ 254 (346)
.+..+++.| ++.+++.+...+..+-.|-.. .. -.++ .......+..+.+. ...++
T Consensus 164 ~~~~~~~~~-~~~~~~~g~~G~~~~S~d~gG-~t--------------------W~~~--~~~~~~~~~~~~~~~~g~~~ 219 (327)
T 2xbg_A 164 VMRNLNRSP-SGEYVAVSSRGSFYSTWEPGQ-TA--------------------WEPH--NRTTSRRLHNMGFTPDGRLW 219 (327)
T ss_dssp CEEEEEECT-TSCEEEEETTSSEEEEECTTC-SS--------------------CEEE--ECCSSSCEEEEEECTTSCEE
T ss_pred ceEEEEEcC-CCcEEEEECCCcEEEEeCCCC-Cc--------------------eeEC--CCCCCCccceeEECCCCCEE
Confidence 788999998 777666654433333333211 00 0000 11233456666665 33455
Q ss_pred EEeecCeEEEEcCCCCCCCCCCccccccccc-cCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 255 SKSVDNEIVLWEPKMKEQSPGEGTADILQKY-PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 255 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
.++.+|.+++.+.+.++. ...+..- ......+..+.+.+++ .+++++. +|.| ++....++
T Consensus 220 ~~~~~G~~~~s~~D~G~t------W~~~~~~~~~~~~~~~~v~~~~~~--~~~~~g~-~g~i-~~S~DgG~ 280 (327)
T 2xbg_A 220 MIVNGGKIAFSDPDNSEN------WGELLSPLRRNSVGFLDLAYRTPN--EVWLAGG-AGAL-LCSQDGGQ 280 (327)
T ss_dssp EEETTTEEEEEETTEEEE------ECCCBCTTSSCCSCEEEEEESSSS--CEEEEES-TTCE-EEESSTTS
T ss_pred EEeCCceEEEecCCCCCe------eEeccCCcccCCcceEEEEecCCC--EEEEEeC-CCeE-EEeCCCCc
Confidence 566678877764332221 0011100 0112357888888776 4555544 6766 44444443
No 301
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.67 E-value=0.012 Score=47.17 Aligned_cols=232 Identities=10% Similarity=0.053 Sum_probs=113.2
Q ss_pred CccEEEEEcC-----CcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec----C-----CeEEEE
Q 019117 48 YFNVFATVGG-----NRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI----N-----GIIRVI 113 (346)
Q Consensus 48 ~~~~la~~~~-----~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~----d-----g~i~iw 113 (346)
++.+++.|+. +.+.+||..+.+- ..+..... ...-..++ . .+++ +++.|+. + ..+.+|
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W-~~~~~~p~---~r~~~~~~-~--~~~~-lyv~GG~~~~~~~~~~~~~~~~~ 95 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTW-LRLADLQV---PRSGLAGC-V--VGGL-LYAVGGRNNSPDGNTDSSALDCY 95 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEE-EECCCCSS---CCBSCEEE-E--ETTE-EEEECCEEEETTEEEECCCEEEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeE-eECCCCCc---ccccceEE-E--ECCE-EEEECCCcCCCCCCeecceEEEE
Confidence 3467777763 2388999766543 22222111 11111122 2 3455 6777765 2 468889
Q ss_pred EccCccee--eeeccCCCceEEEEEeCCCCceEEEeeCC-----CCEEEEecCCCeeEEEecccCCCCcceEEEEecCCC
Q 019117 114 DVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKD-----ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD 186 (346)
Q Consensus 114 d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 186 (346)
|+.+.+-. ..+.........+.+ ++.+++.|+.+ ..+.+||+.+.+-...-... ...... +++.. +
T Consensus 96 d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~-~~~~~--~ 168 (308)
T 1zgk_A 96 NPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML-TRRIGV-GVAVL--N 168 (308)
T ss_dssp ETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCS-SCCBSC-EEEEE--T
T ss_pred CCCCCeEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCC-ccccce-EEEEE--C
Confidence 98776422 222221222222322 45677777643 35888998876533221110 111122 22232 5
Q ss_pred CcEEEEEecC-----CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeec--
Q 019117 187 IYRIASCGMD-----NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVD-- 259 (346)
Q Consensus 187 ~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d-- 259 (346)
+.+++.|+.+ ..+.+||+.+..-. ..+. +......-.++.+.+.+++.|+.+
T Consensus 169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~--------~~~~-------------~p~~r~~~~~~~~~~~iyv~GG~~~~ 227 (308)
T 1zgk_A 169 RLLYAVGGFDGTNRLNSAECYYPERNEWR--------MITA-------------MNTIRSGAGVCVLHNCIYAAGGYDGQ 227 (308)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEE--------ECCC-------------CSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred CEEEEEeCCCCCCcCceEEEEeCCCCeEe--------eCCC-------------CCCccccceEEEECCEEEEEeCCCCC
Confidence 6777777664 35788888763211 1100 000011112233346667777664
Q ss_pred ---CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC-----CcEEEEEcCCCCcc
Q 019117 260 ---NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE-----GKIFVWELQSSPPV 326 (346)
Q Consensus 260 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~ 326 (346)
..+.+||+.+.+- ..+..+....... +++ ..++ .+++.|+.+ ..+.+||+.+.+-.
T Consensus 228 ~~~~~v~~yd~~~~~W-------~~~~~~p~~r~~~-~~~-~~~~--~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 228 DQLNSVERYDVETETW-------TFVAPMKHRRSAL-GIT-VHQG--RIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp SBCCCEEEEETTTTEE-------EECCCCSSCCBSC-EEE-EETT--EEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred CccceEEEEeCCCCcE-------EECCCCCCCccce-EEE-EECC--EEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 5688999887641 1122222111111 122 2345 577777643 45888998876543
No 302
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.63 E-value=0.015 Score=46.26 Aligned_cols=231 Identities=9% Similarity=0.067 Sum_probs=136.9
Q ss_pred EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCC
Q 019117 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL 139 (346)
Q Consensus 60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 139 (346)
|.|.|+..+.....-.. . - =+...+|..+ .+|.-. ...+.|+|+++.+.++.+.- ...|.--+|-.
T Consensus 51 VvIiDl~n~~~~~Rrpi--~--A------dsAIMnP~~~-ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis- 116 (365)
T 2xzh_A 51 VVIIDMNDPSNPIRRPI--S--A------DSAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS- 116 (365)
T ss_dssp EEEEETTSTTSCEEEEC--C--C------SEEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECS-
T ss_pred EEEEECCCCCCcccccc--c--c------ceeeeCCCcc-EEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecC-
Confidence 89999887665422211 0 1 1222457776 666655 78999999999988887763 46788888875
Q ss_pred CCceEEEeeCCCCEEEEecCC-CeeEEEecccC-CCCcceEEEEecCCCCcEEEEEec-------CCeEEEEEcccccee
Q 019117 140 KPSLVVSASKDESVRLWNVQT-GICILIFAGAG-GHRNEVLSVDFHPSDIYRIASCGM-------DNTVKIWSMKEFWTY 210 (346)
Q Consensus 140 ~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~-------d~~i~iwd~~~~~~~ 210 (346)
.+.|+-.+ +..|+-|++.. ..+.+.+.... -....|..-..++ +.++++..+- .|.+.+|..+..
T Consensus 117 -~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~--- 190 (365)
T 2xzh_A 117 -LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK--- 190 (365)
T ss_dssp -SSEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETTTT---
T ss_pred -CCeEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECC-CCCEEEEEeEeccCCccceeEEEEeeccc---
Confidence 44555444 35799999973 45666665311 1135677777787 6665554432 367788887762
Q ss_pred eeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCC-----EEEEEee---cCeEEEEcCCCC-CCCCCCcc--c
Q 019117 211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD-----FILSKSV---DNEIVLWEPKMK-EQSPGEGT--A 279 (346)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~l~~~~~---d~~i~iwd~~~~-~~~~~~~~--~ 279 (346)
....+.+|...-..+...|+ +++-+.. .+.++|-++... ...+.... .
T Consensus 191 ---------------------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~v 249 (365)
T 2xzh_A 191 ---------------------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAV 249 (365)
T ss_dssp ---------------------EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEE
T ss_pred ---------------------ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccc
Confidence 23344555544433333322 3333322 268999998543 11111100 0
Q ss_pred cccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee
Q 019117 280 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC 333 (346)
Q Consensus 280 ~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 333 (346)
+....-....+-.-++..|+-- .++..-+.-|.|++||++++..+...+...
T Consensus 250 di~fppea~~DFPVamqvs~ky--gviyviTK~G~ihlyDleTgt~i~~nrIS~ 301 (365)
T 2xzh_A 250 DVFFPPEAQNDFPVAMQISEKH--DVVFLITKYGYIHLYDLETGTCIYMNRISG 301 (365)
T ss_dssp EECCCTTCTTCCEEEEEEETTT--TEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred eeeCCccccCCceEEEEecccC--CEEEEEeCCcEEEEEEcccCcEEEEeccCC
Confidence 0001111123344566666654 578888889999999999999877666554
No 303
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.62 E-value=0.032 Score=49.62 Aligned_cols=232 Identities=7% Similarity=-0.079 Sum_probs=125.6
Q ss_pred cEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCC
Q 019117 50 NVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD 129 (346)
Q Consensus 50 ~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 129 (346)
.+|+.+....|+..++............ ..-..+. ++.+++.+..++++-...+.|..++++.......+...-.
T Consensus 318 ~~Ll~~~~~~i~~i~l~~~~~~~~~~~~---~~l~~~~--~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~ 392 (619)
T 3s94_A 318 ELLLLARRTDLRRISLDTPDFTDIVLQL---EDIRHAI--AIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIA 392 (619)
T ss_dssp EEEEEEESSCEEEEESSSTTCCCEECCC---SCCSSEE--EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred eEEEEEcccceEEEecCCCccceeEEec---cccCccE--EEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCC
Confidence 3555555555777776554322111110 0112333 4444465442555555678899999876443333333335
Q ss_pred ceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe-cCCeEEEEEccccc
Q 019117 130 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFW 208 (346)
Q Consensus 130 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~ 208 (346)
....+++...+++++++-+..+.|.+.++... ....+.. ..-...++++++|..+.++++-. ....|...++....
T Consensus 393 ~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~-~~~~l~~--~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~ 469 (619)
T 3s94_A 393 HPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT-MRKILIS--EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSD 469 (619)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEC--TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CcCceEEecccCcEEEEeCCCCcEEEEeCCCC-eEEEEEE--CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCc
Confidence 66788888645667777677789999998744 3333321 23457899999994566555542 23567666665411
Q ss_pred eeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEE-eecCeEEEEcCCCCCCCCCCccccccccc
Q 019117 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK-SVDNEIVLWEPKMKEQSPGEGTADILQKY 285 (346)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 285 (346)
........-.....|+++ ++.|..+ +..+.|..++++..... .+.
T Consensus 470 -----------------------~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~-------~~~-- 517 (619)
T 3s94_A 470 -----------------------RVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRR-------VLV-- 517 (619)
T ss_dssp -----------------------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-------EEE--
T ss_pred -----------------------cEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceE-------EEe--
Confidence 001111122345566666 4455544 44578888888654310 111
Q ss_pred cCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 286 PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 286 ~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
...-....+++...+ .+..+-...+.|...|..++.
T Consensus 518 ~~~l~~P~glav~~~---~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 518 EDKIPHIFGFTLLGD---YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp ECCCCSSCCEEEETT---EEEEECTTSSCEEEEESSSCC
T ss_pred ccCCCCcEEEEEECC---EEEEeecCCCeEEEEEcCCCc
Confidence 111112334555432 355555566777777777764
No 304
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.61 E-value=0.019 Score=47.12 Aligned_cols=94 Identities=14% Similarity=0.099 Sum_probs=47.1
Q ss_pred CccEEEEEcCCc--EEEEEecc-CceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec-C---------CeEEEEE
Q 019117 48 YFNVFATVGGNR--VTVYQCLE-GGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI-N---------GIIRVID 114 (346)
Q Consensus 48 ~~~~la~~~~~~--v~i~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~-d---------g~i~iwd 114 (346)
++.+++.|+.++ +.+||..+ ......+...... .... .+++ . .+++ +++.|+. + ..+.+||
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~-~R~~-~~~~-~--~~~~-lyv~GG~~~~~~~~~~~~~~v~~yd 92 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGG-PRDQ-ATSA-F--IDGN-LYVFGGIGKNSEGLTQVFNDVHKYN 92 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTC-CCBS-CEEE-E--ETTE-EEEECCEEECTTSCEEECCCEEEEE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCC-cCcc-ceEE-E--ECCE-EEEEcCCCCCCCccceeeccEEEEe
Confidence 357777777544 88999764 2333333322100 1111 1122 2 2455 6666665 2 4688899
Q ss_pred ccCccee--eeec-cCCCceEEEEEeCCCCceEEEeeCC
Q 019117 115 VSNEKLH--KSFV-GHGDSINEIRTQPLKPSLVVSASKD 150 (346)
Q Consensus 115 ~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d 150 (346)
+.+.+-. ..+. .......++. . ++.+++.|+.+
T Consensus 93 ~~~~~W~~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~ 128 (357)
T 2uvk_A 93 PKTNSWVKLMSHAPMGMAGHVTFV--H-NGKAYVTGGVN 128 (357)
T ss_dssp TTTTEEEECSCCCSSCCSSEEEEE--E-TTEEEEEECCC
T ss_pred CCCCcEEECCCCCCcccccceEEE--E-CCEEEEEeCcC
Confidence 8776422 2222 1111222232 2 66788888754
No 305
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.59 E-value=0.019 Score=46.21 Aligned_cols=142 Identities=13% Similarity=0.032 Sum_probs=70.8
Q ss_pred cEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec-----C------CeEEEEEccCc
Q 019117 50 NVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI-----N------GIIRVIDVSNE 118 (346)
Q Consensus 50 ~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~-----d------g~i~iwd~~~~ 118 (346)
.+++.|+ +.+.+||..+++-.. ..... ........... .+++ +++.|+. . ..+.+||..+.
T Consensus 6 ~l~~~GG-~~~~~yd~~~~~W~~--~~~~~--p~~r~~~~~~~--~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~ 77 (315)
T 4asc_A 6 LIFMISE-EGAVAYDPAANECYC--ASLSS--QVPKNHVSLVT--KENQ-VFVAGGLFYNEDNKEDPMSAYFLQFDHLDS 77 (315)
T ss_dssp EEEEEET-TEEEEEETTTTEEEE--EECCC--CSCSSEEEEEC--TTCC-EEEEEEEEECSSCSSSCEEEEEEEEETTTT
T ss_pred EEEEEcC-CceEEECCCCCeEec--CCCCC--CCCccceEEEE--ECCE-EEEEcCcccCCCCCccccccceEEecCCCC
Confidence 3455555 569999987766322 21111 11111112222 4566 7777763 1 12778888776
Q ss_pred cee--eeeccCCCceEEEEEeCCCCceEEEeeCC--------CCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCc
Q 019117 119 KLH--KSFVGHGDSINEIRTQPLKPSLVVSASKD--------ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY 188 (346)
Q Consensus 119 ~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 188 (346)
+-. ..+....... +++.. ++.+++.|+.+ ..+.+||+.+.+-.. +.......... +++.. ++.
T Consensus 78 ~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~~~~~--~~~ 150 (315)
T 4asc_A 78 EWLGMPPLPSPRCLF-GLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE-SDPLPYVVYGH-TVLSH--MDL 150 (315)
T ss_dssp EEEECCCBSSCEESC-EEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE-CCCCSSCCBSC-EEEEE--TTE
T ss_pred eEEECCCCCcchhce-eEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE-CCCCCCcccce-eEEEE--CCE
Confidence 522 1222111111 22222 55777777742 458899998765322 22110111112 22233 567
Q ss_pred EEEEEec-C-----CeEEEEEccc
Q 019117 189 RIASCGM-D-----NTVKIWSMKE 206 (346)
Q Consensus 189 ~l~s~~~-d-----~~i~iwd~~~ 206 (346)
+++.|+. + ..+.+||+.+
T Consensus 151 iyv~GG~~~~~~~~~~~~~yd~~~ 174 (315)
T 4asc_A 151 VYVIGGKGSDRKCLNKMCVYDPKK 174 (315)
T ss_dssp EEEECCBCTTSCBCCCEEEEETTT
T ss_pred EEEEeCCCCCCcccceEEEEeCCC
Confidence 7777776 2 3688888876
No 306
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.59 E-value=0.024 Score=47.15 Aligned_cols=231 Identities=9% Similarity=0.064 Sum_probs=138.1
Q ss_pred EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCC
Q 019117 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL 139 (346)
Q Consensus 60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 139 (346)
|.|.|+..+.....-.. .+=+...+|..+ .+|.-. ..++.|+|+++.+.++.+.- ...|.--+|-.
T Consensus 50 vvIiDl~~~~~~~rrpi----------~AdsAIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis- 115 (494)
T 1bpo_A 50 VVIIDMNDPSNPIRRPI----------SADSAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS- 115 (494)
T ss_dssp EEEEETTSTTSCEEEEC----------CCSEEEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEE-
T ss_pred EEEEECCCCCcceeccc----------ccceeeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecC-
Confidence 99999887665422211 111223457776 666554 78999999999988887764 45677888875
Q ss_pred CCceEEEeeCCCCEEEEecCC-CeeEEEecccC-CCCcceEEEEecCCCCcEEEEEe-------cCCeEEEEEcccccee
Q 019117 140 KPSLVVSASKDESVRLWNVQT-GICILIFAGAG-GHRNEVLSVDFHPSDIYRIASCG-------MDNTVKIWSMKEFWTY 210 (346)
Q Consensus 140 ~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~-------~d~~i~iwd~~~~~~~ 210 (346)
.+.|+-.+ +..|+-|++.. ..+.+.+.... -....|..-..++ +.++++..| -.|.+.+|..+..
T Consensus 116 -~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~--- 189 (494)
T 1bpo_A 116 -LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK--- 189 (494)
T ss_dssp -TTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEESTTC---
T ss_pred -CCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECC-CCCeEEEEeecccCCcccceEEEeecccc---
Confidence 34555444 36799999963 35666665311 1135677777787 666665433 2467888888762
Q ss_pred eeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCC-----EEEEEee---cCeEEEEcCCCC-CCCCCCcc--c
Q 019117 211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD-----FILSKSV---DNEIVLWEPKMK-EQSPGEGT--A 279 (346)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~l~~~~~---d~~i~iwd~~~~-~~~~~~~~--~ 279 (346)
....+.+|...-..+...|+ +++-+.. .+.++|-++... ...+.... .
T Consensus 190 ---------------------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~v 248 (494)
T 1bpo_A 190 ---------------------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAV 248 (494)
T ss_dssp ---------------------CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEE
T ss_pred ---------------------ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceee
Confidence 23345555554444444422 3333333 278999998653 11111100 0
Q ss_pred cccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee
Q 019117 280 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC 333 (346)
Q Consensus 280 ~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 333 (346)
+....-.....-..++..|+.- .++..-+.-|.|++||++++..+...++..
T Consensus 249 dv~fppe~~~DFPvamqvs~ky--gviyviTK~G~i~lyDleTgt~i~~nrIs~ 300 (494)
T 1bpo_A 249 DVFFPPEAQNDFPVAMQISEKH--DVVFLITKYGYIHLYDLETGTCIYMNRISG 300 (494)
T ss_dssp ECCCCTTSTTCCEEEEEEETTT--TEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred eeeCCcccccCceeEEEecccC--CEEEEEecCceEEEEecccceeeeeecccC
Confidence 0000111123344566677655 578888899999999999999877666554
No 307
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.58 E-value=0.021 Score=46.37 Aligned_cols=238 Identities=11% Similarity=-0.009 Sum_probs=117.4
Q ss_pred CCceEEEEEEeecCCCccEEEEEcCCcEEEEEecc-CceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 019117 33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLE-GGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (346)
Q Consensus 33 ~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 111 (346)
...+.+|.|.| +..++.+. .+ .||...+ ++....+... ......+..+.+. +++. .++.+ .+|.|.
T Consensus 79 ~~~~~~i~~~~-----~~~~~~g~-~g-~i~~S~DgG~tW~~~~~~--~~~~~~~~~i~~~--~~~~-~~~~~-~~g~v~ 145 (327)
T 2xbg_A 79 DYRFNSVSFQG-----NEGWIVGE-PP-IMLHTTDGGQSWSQIPLD--PKLPGSPRLIKAL--GNGS-AEMIT-NVGAIY 145 (327)
T ss_dssp CCEEEEEEEET-----TEEEEEEE-TT-EEEEESSTTSSCEECCCC--TTCSSCEEEEEEE--ETTE-EEEEE-TTCCEE
T ss_pred CccEEEEEecC-----CeEEEEEC-CC-eEEEECCCCCCceECccc--cCCCCCeEEEEEE--CCCC-EEEEe-CCccEE
Confidence 44688999875 35566554 34 2333333 4444433211 0112345555543 5565 55555 455442
Q ss_pred EEEccCcceeee-eccCCCceEEEEEeCCCCceEEEeeCCCCEEEE-ecCCCeeEEEecccCCCCcceEEEEecCCCCcE
Q 019117 112 VIDVSNEKLHKS-FVGHGDSINEIRTQPLKPSLVVSASKDESVRLW-NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR 189 (346)
Q Consensus 112 iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iw-d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 189 (346)
. ..+.++.-.. ...+...+..+.+.+ ++.+++.+. +|.+..- |- .++.-..+.. .....+..+.+.+ ++.+
T Consensus 146 ~-S~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~-gG~tW~~~~~--~~~~~~~~~~~~~-~g~~ 218 (327)
T 2xbg_A 146 R-TKDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEP-GQTAWEPHNR--TTSRRLHNMGFTP-DGRL 218 (327)
T ss_dssp E-ESSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECT-TCSSCEEEEC--CSSSCEEEEEECT-TSCE
T ss_pred E-EcCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCC-CCCceeECCC--CCCCccceeEECC-CCCE
Confidence 2 1223332222 223456788999998 666666554 4555433 32 1222222221 3556788999987 6665
Q ss_pred EEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEcCC
Q 019117 190 IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPK 268 (346)
Q Consensus 190 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~ 268 (346)
+ .++.+|.+.+.+...... |..... + . ..+...+.++.+. ...++.++.++.| ++..+
T Consensus 219 ~-~~~~~G~~~~s~~D~G~t-------W~~~~~---------~--~-~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~D 277 (327)
T 2xbg_A 219 W-MIVNGGKIAFSDPDNSEN-------WGELLS---------P--L-RRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQD 277 (327)
T ss_dssp E-EEETTTEEEEEETTEEEE-------ECCCBC---------T--T-SSCCSCEEEEEESSSSCEEEEESTTCE-EEESS
T ss_pred E-EEeCCceEEEecCCCCCe-------eEeccC---------C--c-ccCCcceEEEEecCCCEEEEEeCCCeE-EEeCC
Confidence 4 455678877764221111 100000 0 0 0012245666665 3334444556766 44444
Q ss_pred CCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEc
Q 019117 269 MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 320 (346)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~ 320 (346)
.++. ...+.........+..+.|.+++ .+++++.+|.|.-++-
T Consensus 278 gG~t------W~~~~~~~~~~~~~~~v~~~~~~---~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 278 GGQT------WQQDVDVKKVPSNFYKILFFSPD---QGFILGQKGILLRYVT 320 (327)
T ss_dssp TTSS------CEECGGGTTSSSCCCEEEEEETT---EEEEECSTTEEEEECC
T ss_pred CCcc------cEEcCccCCCCCCeEEEEEECCC---ceEEEcCCceEEEEcC
Confidence 4431 11222111123467888888655 4666677898776654
No 308
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.54 E-value=0.021 Score=48.28 Aligned_cols=156 Identities=10% Similarity=0.043 Sum_probs=86.3
Q ss_pred ceEEEEEeCC-CCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecC---Ce-EEEEEc
Q 019117 130 SINEIRTQPL-KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD---NT-VKIWSM 204 (346)
Q Consensus 130 ~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~~-i~iwd~ 204 (346)
....++|.|+ +...|+.+...+.|+.+|+.+++...... .......+++++ ++.++++.... .. +...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~----~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT----NIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC----CCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec----CCCCccEEEECC-CCCEEEEcCCCCcccceEEEEEC
Confidence 4568999983 23444444444899999998777654443 456689999998 77755554321 11 222222
Q ss_pred cccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEeecCeEEEEcCCCCCCCCCCccccc
Q 019117 205 KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADI 281 (346)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 281 (346)
..... . ...+. .-.....++++ +.+.++-..++.|+.+|..++... ..
T Consensus 215 ~~~~~--------------------~--~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~------~~ 265 (433)
T 4hw6_A 215 ASGFT--------------------E--RLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT------EE 265 (433)
T ss_dssp GGTTC--------------------C--EEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE------EE
T ss_pred CCCee--------------------c--ccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE------EE
Confidence 11000 0 00111 11222334443 455555556788999998765410 01
Q ss_pred cccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117 282 LQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (346)
Q Consensus 282 ~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~ 321 (346)
+.... ....-..++|+|++. .++++-...+.|+.++..
T Consensus 266 ~~~~~-~~~~~~~ia~dpdG~-~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 266 EVMMD-TKGSNFHIVWHPTGD-WAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp EEECS-CCSSCEEEEECTTSS-EEEEEETTTTEEEEEEBC
T ss_pred EeccC-CCCCcccEEEeCCCC-EEEEEeCCCCEEEEEeCC
Confidence 11111 112234699999994 256666677899998865
No 309
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.37 E-value=0.043 Score=45.03 Aligned_cols=104 Identities=13% Similarity=0.109 Sum_probs=57.2
Q ss_pred CceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeee-cCCCccceEEEEEEEcCC---CCcEEEEeec-C-
Q 019117 34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYV-DEDKEESFYTVSWACNVD---GIPFLVAGGI-N- 107 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~---~~~~l~~~~~-d- 107 (346)
.....++|.| +|+++++-..+.|.+++ ++. ...+.... ..........+++. |+ +. .|+.+.. .
T Consensus 31 ~~P~~ia~~p----dG~l~V~e~~g~I~~i~--~g~-~~~~~~~~v~~~g~~~p~gia~~--pdf~~~g-~lYv~~~~~~ 100 (352)
T 2ism_A 31 EVPWALAFLP----DGGMLIAERPGRIRLFR--EGR-LSTYAELSVYHRGESGLLGLALH--PRFPQEP-YVYAYRTVAE 100 (352)
T ss_dssp SCEEEEEECT----TSCEEEEETTTEEEEEE--TTE-EEEEEECCCCCSTTCSEEEEEEC--TTTTTSC-EEEEEEEECT
T ss_pred CCceEEEEcC----CCeEEEEeCCCeEEEEE--CCC-ccEeecceEeecCCCCceeEEEC--CCCCCCC-EEEEEEecCC
Confidence 4467999998 78888887665588888 333 22222111 01112345555554 87 44 4444432 2
Q ss_pred ----CeEEEEEccCcc-----ee-eeec---cCCCceEEEEEeCCCCceEEEee
Q 019117 108 ----GIIRVIDVSNEK-----LH-KSFV---GHGDSINEIRTQPLKPSLVVSAS 148 (346)
Q Consensus 108 ----g~i~iwd~~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~~~l~s~~ 148 (346)
+.|..++...++ .+ ..+. ........++|.| ++.++++.+
T Consensus 101 ~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G 153 (352)
T 2ism_A 101 GGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTG 153 (352)
T ss_dssp TSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECC
T ss_pred CCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEEC
Confidence 678888876431 11 2233 1112346899999 776666644
No 310
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.36 E-value=0.11 Score=49.68 Aligned_cols=175 Identities=13% Similarity=0.060 Sum_probs=104.3
Q ss_pred CeEEEEEccCcceeeeecc-CCCceEEEEE---eCCCCceEEEee----------CCCCEEEEecCCCeeEEEecccCCC
Q 019117 108 GIIRVIDVSNEKLHKSFVG-HGDSINEIRT---QPLKPSLVVSAS----------KDESVRLWNVQTGICILIFAGAGGH 173 (346)
Q Consensus 108 g~i~iwd~~~~~~~~~~~~-~~~~v~~~~~---~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~ 173 (346)
+.|++.|..+.+.+..+.- ....+.+++. ......+|+.|. ..|.|.++++..++.....+. ..
T Consensus 807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~--~v 884 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEK--EV 884 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEE--EE
T ss_pred EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEE--Ec
Confidence 3577778777776555432 2334455543 322346788775 347899999875443322221 25
Q ss_pred CcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceE-EEeeccc-ceEEEEecCC
Q 019117 174 RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF-IASVHSN-YVDCNRWLGD 251 (346)
Q Consensus 174 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~i~~~~~~~~ 251 (346)
.++|++++-- ++.+++.. ..+|++|++...+. +. ....+.. .+..+...++
T Consensus 885 ~g~v~al~~~--~g~Lla~i--g~~l~vy~l~~~~~-----------------------L~~~~~~~~~i~~~~l~~~~~ 937 (1158)
T 3ei3_A 885 KGAVYSMVEF--NGKLLASI--NSTVRLYEWTTEKE-----------------------LRTECNHYNNIMALYLKTKGD 937 (1158)
T ss_dssp SSCEEEEEEE--TTEEEEEE--TTEEEEEEECTTSC-----------------------EEEEEEECCCSCEEEEEEETT
T ss_pred CCcCEEEeee--CCEEEEEc--CCEEEEEECCCCce-----------------------EEEEeeccccEEEEEEeccCC
Confidence 6889998865 45544433 47899999976221 11 1111111 1234444589
Q ss_pred EEEEEeecCeEEEEcCCCCCCCCCCccccccccc--cCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117 252 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY--PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (346)
Q Consensus 252 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~ 322 (346)
+++.|..-..|.+...+.... .+..+ ......++++.|-.+. .++.+..+|.|.+.....
T Consensus 938 ~I~vgD~~~Sv~~~~y~~~~~--------~L~~~a~D~~~~~vta~~~ld~~---t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 938 FILVGDLMRSVLLLAYKPMEG--------NFEEIARDFNPNWMSAVEILDDD---NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEEEESSBCEEEEEEETTTT--------EEEEEEECCSCBCEEEEEEEETT---EEEEEETTSEEEEEEECT
T ss_pred EEEEEEhhheEEEEEEEcCCC--------eEEEEEeecccccEEEEEEEccC---cEEEEcCCCcEEEEecCC
Confidence 999998877777766543221 11111 2234578888887665 677788999999997765
No 311
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.24 E-value=0.052 Score=43.28 Aligned_cols=186 Identities=11% Similarity=0.056 Sum_probs=92.2
Q ss_pred EEEEee-cC-----CeEEEEEccCccee--eeeccCCCceEEEEEeCCCCceEEEeeCC-----CCEEEEecCCCe---e
Q 019117 100 FLVAGG-IN-----GIIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKD-----ESVRLWNVQTGI---C 163 (346)
Q Consensus 100 ~l~~~~-~d-----g~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~---~ 163 (346)
+++.|+ .+ ..+.+||+.+.+-. ..+.........+ .. ++.+++.|+.+ ..+.+||+.+.+ -
T Consensus 17 i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W 93 (301)
T 2vpj_A 17 LLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASV-SL--HDRIYVIGGYDGRSRLSSVECLDYTADEDGVW 93 (301)
T ss_dssp EEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEE-EE--TTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred EEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEE-EE--CCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence 566666 32 46888998776522 2222211122222 22 56777888755 468899988765 2
Q ss_pred EEEecccCCCCcceEEEEecCCCCcEEEEEecCC-----eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEee
Q 019117 164 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-----TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 238 (346)
Q Consensus 164 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (346)
... .......... +++.. ++.+++.|+.++ .+.+||+.+..-... ..+..
T Consensus 94 ~~~-~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~---------------------~~~p~ 148 (301)
T 2vpj_A 94 YSV-APMNVRRGLA-GATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSML---------------------GDMQT 148 (301)
T ss_dssp EEE-CCCSSCCBSC-EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEE---------------------EECSS
T ss_pred EEC-CCCCCCccce-eEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEEC---------------------CCCCC
Confidence 222 2110111122 22222 567777776543 577888776321110 00110
Q ss_pred cccceEEEEecCCEEEEEeec-----CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC-
Q 019117 239 HSNYVDCNRWLGDFILSKSVD-----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE- 312 (346)
Q Consensus 239 ~~~~i~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d- 312 (346)
....-.++.+.+.+++.|+.+ ..+.+||+.+.+- ..+..+......- .+...++ .+++.|+.+
T Consensus 149 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W-------~~~~~~p~~r~~~--~~~~~~~--~i~v~GG~~~ 217 (301)
T 2vpj_A 149 AREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHW-------TNVTPMATKRSGA--GVALLND--HIYVVGGFDG 217 (301)
T ss_dssp CCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEE-------EEECCCSSCCBSC--EEEEETT--EEEEECCBCS
T ss_pred CcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcE-------EeCCCCCcccccc--eEEEECC--EEEEEeCCCC
Confidence 011112223346666777654 4588889877541 1121222111111 1222344 577777654
Q ss_pred ----CcEEEEEcCCCC
Q 019117 313 ----GKIFVWELQSSP 324 (346)
Q Consensus 313 ----g~i~iwd~~~~~ 324 (346)
..+.+||+.+.+
T Consensus 218 ~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 218 TAHLSSVEAYNIRTDS 233 (301)
T ss_dssp SSBCCCEEEEETTTTE
T ss_pred CcccceEEEEeCCCCc
Confidence 468999998765
No 312
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.19 E-value=0.062 Score=43.27 Aligned_cols=142 Identities=14% Similarity=0.053 Sum_probs=68.5
Q ss_pred EEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeec----CC-------eEEEEEccCcc
Q 019117 51 VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI----NG-------IIRVIDVSNEK 119 (346)
Q Consensus 51 ~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~----dg-------~i~iwd~~~~~ 119 (346)
+++.|+ ..+..||..+++-.. .. ... ...... .+.. ..++. +++.|+. ++ .+.+||..+.+
T Consensus 18 i~~~GG-~~~~~yd~~~~~W~~-~~-~~~--~~~r~~-~~~~-~~~~~-lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~ 89 (318)
T 2woz_A 18 ILLVND-TAAVAYDPMENECYL-TA-LAE--QIPRNH-SSIV-TQQNQ-VYVVGGLYVDEENKDQPLQSYFFQLDNVSSE 89 (318)
T ss_dssp EEEECS-SEEEEEETTTTEEEE-EE-ECT--TSCSSE-EEEE-CSSSC-EEEEESSCC-------CCCBEEEEEETTTTE
T ss_pred hhhccc-cceEEECCCCCceec-cc-CCc--cCCccc-eEEE-EECCE-EEEECCcccCccccCCCccccEEEEeCCCCc
Confidence 444443 458899987766433 21 111 011111 1222 24566 7777763 12 27778877654
Q ss_pred eee--eeccCCCceEEEEEeCCCCceEEEeeCC-------CCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEE
Q 019117 120 LHK--SFVGHGDSINEIRTQPLKPSLVVSASKD-------ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI 190 (346)
Q Consensus 120 ~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 190 (346)
-.. .+.........+.+ ++.+++.|+.+ ..+.+||+.+.+-...-... ...... +++.. ++.++
T Consensus 90 W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~-~~~~~--~~~iy 162 (318)
T 2woz_A 90 WVGLPPLPSARCLFGLGEV---DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLP-IKVYGH-NVISH--NGMIY 162 (318)
T ss_dssp EEECSCBSSCBCSCEEEEE---TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCS-SCEESC-EEEEE--TTEEE
T ss_pred EEECCCCCccccccceEEE---CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCC-Cccccc-EEEEE--CCEEE
Confidence 222 22211112222222 45677777754 24788888876543321110 111111 22222 56777
Q ss_pred EEEecC------CeEEEEEcccc
Q 019117 191 ASCGMD------NTVKIWSMKEF 207 (346)
Q Consensus 191 ~s~~~d------~~i~iwd~~~~ 207 (346)
+.|+.+ ..+.+||+.+.
T Consensus 163 v~GG~~~~~~~~~~~~~yd~~~~ 185 (318)
T 2woz_A 163 CLGGKTDDKKCTNRVFIYNPKKG 185 (318)
T ss_dssp EECCEESSSCBCCCEEEEETTTT
T ss_pred EEcCCCCCCCccceEEEEcCCCC
Confidence 777642 35888888773
No 313
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.13 E-value=0.039 Score=45.76 Aligned_cols=148 Identities=14% Similarity=0.161 Sum_probs=91.4
Q ss_pred CccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc--------
Q 019117 48 YFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-------- 119 (346)
Q Consensus 48 ~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------- 119 (346)
++..++.+.++.|+.-++..+...+.+..-. ...-..+..+. .+|+|+ +||..+ +..|.|-.+..+.
T Consensus 31 n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~-~i~f~~i~qlv--lSpsG~-lLAl~g-~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 31 NGTRIVFIQDNIIRWYNVLTDSLYHSLNFSR-HLVLDDTFHVI--SSTSGD-LLCLFN-DNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp TTTEEEEEETTEEEEEETTTCSSCEEEECTT-TCCCCTTCEEE--ECTTSS-EEEEEC-SSEEEEEECCTTCSCCCCHHH
T ss_pred CCCEEEEEECCEEEEEECCCCCcceEEecCc-ccccCceeEEE--ECCCCC-EEEEec-CCeEEEEEecCccccCccccc
Confidence 4566666666668877776554444443210 00122344444 459999 888876 5688998876321
Q ss_pred ----eeeeecc------CCCceEEEEEeCCC--CceEEEeeCCCCEEEEecCCC--eeEEEecc------cCCCCcceEE
Q 019117 120 ----LHKSFVG------HGDSINEIRTQPLK--PSLVVSASKDESVRLWNVQTG--ICILIFAG------AGGHRNEVLS 179 (346)
Q Consensus 120 ----~~~~~~~------~~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~------~~~~~~~v~~ 179 (346)
..+.+.- ...+|..+.|+|.. +..|++-..|+.|++||+... ++. .+.. .......|.+
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEE
Confidence 1112221 24679999999953 348999999999999999852 222 2321 1123367889
Q ss_pred EEecCCCCcEEEEEe--cCCeEEEE
Q 019117 180 VDFHPSDIYRIASCG--MDNTVKIW 202 (346)
Q Consensus 180 ~~~~~~~~~~l~s~~--~d~~i~iw 202 (346)
++|.+ ++-.|...+ ..|-|.-.
T Consensus 185 ~~Fg~-~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 185 LEFSK-DGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEECT-TSSCEEEEECTTSCEEEEE
T ss_pred EEEcC-CCcEEEEEecCCCCCEEEE
Confidence 99997 776666644 77777543
No 314
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.11 E-value=0.072 Score=42.47 Aligned_cols=186 Identities=11% Similarity=0.108 Sum_probs=90.7
Q ss_pred EEEEeecC----CeEEEEEccCcceee--eeccCCCceEEEEEeCCCCceEEEeeCC-----CCEEEEecCCCeeEEEec
Q 019117 100 FLVAGGIN----GIIRVIDVSNEKLHK--SFVGHGDSINEIRTQPLKPSLVVSASKD-----ESVRLWNVQTGICILIFA 168 (346)
Q Consensus 100 ~l~~~~~d----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~ 168 (346)
+++.|+.+ ..+.+||+.+.+-.. .++.....- +++.. ++.+++.|+.+ ..+.+||..+.+-...-.
T Consensus 18 i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 18 MVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA-GMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred EEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccc-eEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 56666543 457888887765222 122111111 22222 56777787754 358889988765333221
Q ss_pred ccCCCCcceEEEEecCCCCcEEEEEecCC-----eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccce
Q 019117 169 GAGGHRNEVLSVDFHPSDIYRIASCGMDN-----TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV 243 (346)
Q Consensus 169 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 243 (346)
........ +++.. ++.+++.|+.++ .+.+||+.+..-.... .+......-
T Consensus 95 -~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~---------------------~~p~~r~~~ 149 (302)
T 2xn4_A 95 -MRDRRSTL-GAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA---------------------PMNTRRSSV 149 (302)
T ss_dssp -CSSCCBSC-EEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC---------------------CCSSCCBSC
T ss_pred -CCccccce-EEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecC---------------------CCCCcccCc
Confidence 11111122 22332 567777777653 4667777663211110 000000111
Q ss_pred EEEEecCCEEEEEeec-------CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC----
Q 019117 244 DCNRWLGDFILSKSVD-------NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE---- 312 (346)
Q Consensus 244 ~~~~~~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d---- 312 (346)
.++.+.+.+++.|+.+ ..+.+||+.+.+- ..+..+....... ++ ...++ .+++.|+.+
T Consensus 150 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W-------~~~~~~p~~r~~~-~~-~~~~~--~iyv~GG~~~~~~ 218 (302)
T 2xn4_A 150 GVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEW-------TYIAEMSTRRSGA-GV-GVLNN--LLYAVGGHDGPLV 218 (302)
T ss_dssp EEEEETTEEEEECCEETTTTEECCCEEEEETTTTEE-------EEECCCSSCCBSC-EE-EEETT--EEEEECCBSSSSB
T ss_pred eEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcE-------EECCCCccccccc-cE-EEECC--EEEEECCCCCCcc
Confidence 2223336666666653 3488899876531 1111222111111 12 22345 577777654
Q ss_pred -CcEEEEEcCCCC
Q 019117 313 -GKIFVWELQSSP 324 (346)
Q Consensus 313 -g~i~iwd~~~~~ 324 (346)
..+.+||+.+++
T Consensus 219 ~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 219 RKSVEVYDPTTNA 231 (302)
T ss_dssp CCCEEEEETTTTE
T ss_pred cceEEEEeCCCCC
Confidence 368899988765
No 315
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.05 E-value=0.096 Score=42.92 Aligned_cols=101 Identities=15% Similarity=0.158 Sum_probs=56.0
Q ss_pred EEEEEEEcCCCCcEEEEeecCCeEEEEEccCcce--eeeec---cCCCceEEEEEeCC---CCceEEEeeCC-----CCE
Q 019117 87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL--HKSFV---GHGDSINEIRTQPL---KPSLVVSASKD-----ESV 153 (346)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~---~~~~~v~~~~~~~~---~~~~l~s~~~d-----~~i 153 (346)
..+++. |+|+ ++++ ..+|.|.+++ +++. +..+. ........|+++|+ ++.+.++-... ..|
T Consensus 34 ~~ia~~--pdG~-l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 34 WALAFL--PDGG-MLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp EEEEEC--TTSC-EEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred eEEEEc--CCCe-EEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 335554 9998 5554 5569999998 3432 22221 12356789999993 24444444332 568
Q ss_pred EEEecCCCe-----eE-EEecccCCCCcceEEEEecCCCCcEEEEEe
Q 019117 154 RLWNVQTGI-----CI-LIFAGAGGHRNEVLSVDFHPSDIYRIASCG 194 (346)
Q Consensus 154 ~iwd~~~~~-----~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 194 (346)
..++...+. .+ ..+............++|.| ++.++++.+
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G 153 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTG 153 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEEC
Confidence 888876431 11 11220001112346899999 777777654
No 316
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.03 E-value=0.11 Score=43.18 Aligned_cols=164 Identities=16% Similarity=0.089 Sum_probs=91.6
Q ss_pred CCceEEEeeCCCCEEEEecCCCeeEEEecccC-CCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeec
Q 019117 140 KPSLVVSASKDESVRLWNVQTGICILIFAGAG-GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT 218 (346)
Q Consensus 140 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 218 (346)
++..++.+- ++.||.-++.....-+.+.... -.-..|..+..+| +|.+|+..+ +..|.|-.+..........
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~---- 103 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDV---- 103 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCH----
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCccc----
Confidence 444444433 3677777776444444444210 0123678899999 899888876 4588888887421100000
Q ss_pred CCCCCCCCccceeceEEEee------cccceEEEEec-----CCEEEEEeecCeEEEEcCCCCCCCCCCccccc--cccc
Q 019117 219 DLPSKFPTKYVQFPVFIASV------HSNYVDCNRWL-----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADI--LQKY 285 (346)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~ 285 (346)
........+.+.. ....|..+.|+ +..|++-..|+.|++||+......+. ..... ....
T Consensus 104 -------~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~ 175 (452)
T 3pbp_A 104 -------SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGL 175 (452)
T ss_dssp -------HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEES
T ss_pred -------ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCC
Confidence 0000011122221 24668888887 66999999999999999987432221 00000 0122
Q ss_pred cCCCcCeeEEEEeecCCcceEEEEcCCCcEEEE
Q 019117 286 PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (346)
Q Consensus 286 ~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iw 318 (346)
......|.+++|..++-.-|+++.+.+|.|+-.
T Consensus 176 d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 176 DARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred CcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 223467889999997732233345577776543
No 317
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.078 Score=42.93 Aligned_cols=112 Identities=13% Similarity=0.072 Sum_probs=69.8
Q ss_pred EEEEeecCCeEEEEEccCcceeeeeccC-CCceEEEEEe--CCCCceEEEe-eCCCCEEEEecCCCeeEEEecccC-CCC
Q 019117 100 FLVAGGINGIIRVIDVSNEKLHKSFVGH-GDSINEIRTQ--PLKPSLVVSA-SKDESVRLWNVQTGICILIFAGAG-GHR 174 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~-~~~ 174 (346)
+++.++.||.|.-.|..+|+....++.. ..++....-. +.++..++.. +.||.|..++..+|.....+.... -..
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 7889999999999999999999888754 1222221110 1122334343 689999999998886655443210 011
Q ss_pred cceEEEEecC--------CCCcEEEEEecCCeEEEEEccccceeee
Q 019117 175 NEVLSVDFHP--------SDIYRIASCGMDNTVKIWSMKEFWTYVE 212 (346)
Q Consensus 175 ~~v~~~~~~~--------~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 212 (346)
.++.. .-.| ..+..+++|+.+|.+...|+++++....
T Consensus 92 SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~ 136 (339)
T 2be1_A 92 SPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISA 136 (339)
T ss_dssp CSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEE
T ss_pred ccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEE
Confidence 22221 1000 0356789999999999999999665443
No 318
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.91 E-value=0.081 Score=45.27 Aligned_cols=170 Identities=9% Similarity=-0.047 Sum_probs=90.1
Q ss_pred eEEEEEeCC-CCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEe-------cCCCCcEEEEEecCC-----
Q 019117 131 INEIRTQPL-KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF-------HPSDIYRIASCGMDN----- 197 (346)
Q Consensus 131 v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~~l~s~~~d~----- 197 (346)
...|+|.|. +++++++-...+.|++.|+..+..................++| ++ ++..|+.+...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGGG
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCccc
Confidence 568999983 3455555544577999999877665554421112346899999 98 666455554433
Q ss_pred --eEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec---CCEEEEEeecCeEEEEcCC----
Q 019117 198 --TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPK---- 268 (346)
Q Consensus 198 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~---- 268 (346)
.|.+++..... .+........+..+ .|. ..++.+ +.++++-..++.|..+|+.
T Consensus 220 ~~~V~~i~r~~~G--------------~~~~~~~~~~v~~~-~~p---~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~ 281 (496)
T 3kya_A 220 SPSVYIIKRNADG--------------TFDDRSDIQLIAAY-KQC---NGATIHPINGELYFNSYEKGQVFRLDLVDYFK 281 (496)
T ss_dssp EEEEEEEECCTTS--------------CCSTTSCEEEEEEE-SCC---CCEEECTTTCCEEEEETTTTEEEEECHHHHHH
T ss_pred CceEEEEecCCCC--------------ceeecccceeeccC-CCc---eEEEEcCCCCeEEEEECCCCEEEEEecccccc
Confidence 24455422200 00000000111111 122 234444 4566666678889999997
Q ss_pred ---CCCCCCC-Ccc----ccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcC
Q 019117 269 ---MKEQSPG-EGT----ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (346)
Q Consensus 269 ---~~~~~~~-~~~----~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~ 321 (346)
++..... ... ...+... ........++|+|++. .++++-+....|+.++..
T Consensus 282 ~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~-~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 282 TIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGK-YAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp HHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSS-EEEEEETTTTEEEEEEEE
T ss_pred cccCceeecccccccccccceeEec-CCCCCceEEEEcCCCC-EEEEEeCCCCEEEEEecC
Confidence 4432000 000 0011111 1223467899999993 245555677889886654
No 319
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.85 E-value=0.1 Score=41.69 Aligned_cols=190 Identities=14% Similarity=0.066 Sum_probs=92.8
Q ss_pred CCCCcEEEEeecC----CeEEEEEccCcceee--eeccCCCceEEEEEeCCCCceEEEeeC----C-----CCEEEEecC
Q 019117 95 VDGIPFLVAGGIN----GIIRVIDVSNEKLHK--SFVGHGDSINEIRTQPLKPSLVVSASK----D-----ESVRLWNVQ 159 (346)
Q Consensus 95 ~~~~~~l~~~~~d----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~----d-----~~i~iwd~~ 159 (346)
-++. +++.|+.+ ..+.+||..+.+-.. .++...... +++.. ++.+++.|+. + ..+.+||+.
T Consensus 23 ~~~~-i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 23 VGRL-IYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCC-EEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE--TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred CCCE-EEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE--CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 3455 66666632 468889987765222 222111111 22222 5667777765 2 468889988
Q ss_pred CCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecC-----CeEEEEEccccceeeeeceeecCCCCCCCCccceeceE
Q 019117 160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-----NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF 234 (346)
Q Consensus 160 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (346)
+.+-... .......... +++.. ++.+++.|+.+ ..+.+||+.+..-.. .+.
T Consensus 99 ~~~W~~~-~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~--------~~~------------ 154 (308)
T 1zgk_A 99 TNQWSPC-APMSVPRNRI-GVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHL--------VAP------------ 154 (308)
T ss_dssp TTEEEEC-CCCSSCCBTC-EEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEE--------CCC------------
T ss_pred CCeEeEC-CCCCcCcccc-EEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeE--------CCC------------
Confidence 7653322 2111111122 22222 56677777644 357788877632111 100
Q ss_pred EEeecccceEEEEecCCEEEEEeec-----CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEE
Q 019117 235 IASVHSNYVDCNRWLGDFILSKSVD-----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG 309 (346)
Q Consensus 235 ~~~~~~~~i~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~ 309 (346)
+......-.++.+.+.+++.|+.+ ..+.+||+.+.+- ..+..+......-..+ ..++ .+++.|
T Consensus 155 -~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-------~~~~~~p~~r~~~~~~--~~~~--~iyv~G 222 (308)
T 1zgk_A 155 -MLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEW-------RMITAMNTIRSGAGVC--VLHN--CIYAAG 222 (308)
T ss_dssp -CSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEE-------EECCCCSSCCBSCEEE--EETT--EEEEEC
T ss_pred -CCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeE-------eeCCCCCCccccceEE--EECC--EEEEEe
Confidence 000001112223346666666654 4588888876541 1111122111111222 2245 577777
Q ss_pred cCC-----CcEEEEEcCCCC
Q 019117 310 NRE-----GKIFVWELQSSP 324 (346)
Q Consensus 310 ~~d-----g~i~iwd~~~~~ 324 (346)
+.+ ..+.+||+.+.+
T Consensus 223 G~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 223 GYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp CBCSSSBCCCEEEEETTTTE
T ss_pred CCCCCCccceEEEEeCCCCc
Confidence 654 468999988764
No 320
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.83 E-value=0.13 Score=41.01 Aligned_cols=145 Identities=16% Similarity=0.179 Sum_probs=74.6
Q ss_pred CccEEEEEcCC-----cEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecC------CeEEEEEcc
Q 019117 48 YFNVFATVGGN-----RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN------GIIRVIDVS 116 (346)
Q Consensus 48 ~~~~la~~~~~-----~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~ 116 (346)
++.+++.|+.+ .+.+||..++.- ..+..... .... . .+.. .+++ +++.|+.+ ..+.+||+.
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W-~~~~~~p~--~r~~-~-~~~~--~~~~-iyv~GG~~~~~~~~~~~~~~d~~ 126 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSW-YSKLGPPT--PRDS-L-AACA--AEGK-IYTSGGSEVGNSALYLFECYDTR 126 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEE-EEEECCSS--CCBS-C-EEEE--ETTE-EEEECCBBTTBSCCCCEEEEETT
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeE-EECCCCCc--cccc-e-eEEE--ECCE-EEEECCCCCCCcEeeeEEEEeCC
Confidence 35677777643 388888776543 22222111 1111 1 1122 2566 77777655 468899988
Q ss_pred Ccceee--eeccCCCceEEEEEeCCCCceEEEeeC---------CCCEEEEecCCCeeEEEecccCCCCcceEEEEecCC
Q 019117 117 NEKLHK--SFVGHGDSINEIRTQPLKPSLVVSASK---------DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS 185 (346)
Q Consensus 117 ~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 185 (346)
+.+-.. .+.........+.+ ++.+++.|+. -..+.+||+.+.+-...-. ....... .+++..
T Consensus 127 ~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~-~~~~~~-- 199 (306)
T 3ii7_A 127 TESWHTKPSMLTQRCSHGMVEA---NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCP-MIEARKN-HGLVFV-- 199 (306)
T ss_dssp TTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECC-CSSCCBS-CEEEEE--
T ss_pred CCceEeCCCCcCCcceeEEEEE---CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCC-ccchhhc-ceEEEE--
Confidence 765222 22211122222222 4567777764 3458899998775332211 1011111 223333
Q ss_pred CCcEEEEEecC-----CeEEEEEcccc
Q 019117 186 DIYRIASCGMD-----NTVKIWSMKEF 207 (346)
Q Consensus 186 ~~~~l~s~~~d-----~~i~iwd~~~~ 207 (346)
++.+++.|+.+ ..+.+||+.+.
T Consensus 200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 200 KDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp TTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred CCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 56677777654 35788888763
No 321
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.79 E-value=0.24 Score=47.87 Aligned_cols=231 Identities=9% Similarity=0.062 Sum_probs=127.2
Q ss_pred EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccCCCceEEEEEeCC
Q 019117 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL 139 (346)
Q Consensus 60 v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 139 (346)
|.|.|+..+..+.. .++.+=+...+|..+ .+|.-. ..++.|+|+.+.+.++.+.- ...|.--.|-.
T Consensus 50 vvIidl~~~~~~~r----------rpi~AdsAIMnP~~~-iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis- 115 (1630)
T 1xi4_A 50 VVIIDMNDPSNPIR----------RPISADSAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS- 115 (1630)
T ss_pred EEEEECCCCCCccc----------ccccchhhccCCCcc-eEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecC-
Confidence 88888877654321 112222233457766 555554 78999999998887776663 45677888875
Q ss_pred CCceEEEeeCCCCEEEEecCC-CeeEEEecccC-CCCcceEEEEecCCCCcEEEEEe-------cCCeEEEEEcccccee
Q 019117 140 KPSLVVSASKDESVRLWNVQT-GICILIFAGAG-GHRNEVLSVDFHPSDIYRIASCG-------MDNTVKIWSMKEFWTY 210 (346)
Q Consensus 140 ~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~-------~d~~i~iwd~~~~~~~ 210 (346)
.+.|+-.+ +..|.-|++.. ..+.+.+.... -....|..-..++ +.++++..| ..|.+.+|.......
T Consensus 116 -~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s- 191 (1630)
T 1xi4_A 116 -LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKVS- 191 (1630)
T ss_pred -CCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeeeeecccccc-
Confidence 34444444 35799999963 34555554210 0145676777777 556555432 357888888876221
Q ss_pred eeeceeecCCCCCCCCccceeceEEEeecccceEEEEec----C-CEEEEEee---cCeEEEEcCCCC-CCCCCCc--cc
Q 019117 211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL----G-DFILSKSV---DNEIVLWEPKMK-EQSPGEG--TA 279 (346)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~-~~l~~~~~---d~~i~iwd~~~~-~~~~~~~--~~ 279 (346)
..+.+|...-..+... + ..++.+.. .+.++|-++... ...+... ..
T Consensus 192 -----------------------Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~ 248 (1630)
T 1xi4_A 192 -----------------------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAV 248 (1630)
T ss_pred -----------------------hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccc
Confidence 1222333222222221 1 11111111 268888888553 1111000 00
Q ss_pred cccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcceeeeeee
Q 019117 280 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLIC 333 (346)
Q Consensus 280 ~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 333 (346)
+....-.....-..++..|+.- .++...+.-|.|+++|+.++..+...++..
T Consensus 249 ~~~~~~~~~~Dfpv~~~vs~k~--g~iy~itk~G~~~~~d~~t~~~i~~~ris~ 300 (1630)
T 1xi4_A 249 DVFFPPEAQNDFPVAMQISEKH--DVVFLITKYGYIHLYDLETGTCIYMNRISG 300 (1630)
T ss_pred cccCCcccccCcceEEEecccc--CEEEEEecCceEEEEecccchhhhhccccC
Confidence 0000001112334455666654 577788889999999999998776555443
No 322
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.29 E-value=0.35 Score=39.46 Aligned_cols=159 Identities=11% Similarity=0.031 Sum_probs=87.2
Q ss_pred eEEEEEEeecCCCccEEEEEc------------CCc-EEEEEeccC-ceeeeEeeee--cCCCccceEEEEEEEcCCCCc
Q 019117 36 LYAVVFNFIDSRYFNVFATVG------------GNR-VTVYQCLEG-GVIAALQSYV--DEDKEESFYTVSWACNVDGIP 99 (346)
Q Consensus 36 v~~~~~~p~~~~~~~~la~~~------------~~~-v~i~~~~~~-~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~ 99 (346)
.-+++..| +|..+.+++ .++ |.++|..+. .....+.... .....-....+.+..+.++..
T Consensus 52 ~EDi~~~~----~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~ 127 (355)
T 3sre_A 52 SEDLEILP----NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTV 127 (355)
T ss_dssp CCEEEECT----TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCE
T ss_pred cceeEEcC----CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcE
Confidence 44566666 666766662 344 999998742 2223332111 001122444455543334543
Q ss_pred EEEEee-c--CCeEEEEEccCcc----eeeeeccC-CCceEEEEEeCCCCceEEEee-----------------CCCCEE
Q 019117 100 FLVAGG-I--NGIIRVIDVSNEK----LHKSFVGH-GDSINEIRTQPLKPSLVVSAS-----------------KDESVR 154 (346)
Q Consensus 100 ~l~~~~-~--dg~i~iwd~~~~~----~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~-----------------~d~~i~ 154 (346)
+|+++. . +.+|.+|+++... .+..+.+. -...+++.+.+ ++.+.++.. ..|.|.
T Consensus 128 ~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 128 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence 444442 2 5688888876542 23334332 24578999998 777666643 123444
Q ss_pred EEecCCCeeEEEecccCCCCcceEEEEecCCCCc-EEEEEecCCeEEEEEccc
Q 019117 155 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKE 206 (346)
Q Consensus 155 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~ 206 (346)
.+|. ++.. .+. ..-...+.++|+| +++ ++++-+..+.|..|++..
T Consensus 207 r~d~--~~~~-~~~---~~l~~pNGia~sp-Dg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 207 YYSP--NDVR-VVA---EGFDFANGINISP-DGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EECT--TCCE-EEE---EEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECT
T ss_pred EEEC--CeEE-Eee---cCCcccCcceECC-CCCEEEEEeCCCCeEEEEEECC
Confidence 4444 3322 222 1334678999999 665 445556678999999874
No 323
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.22 E-value=0.35 Score=38.71 Aligned_cols=186 Identities=8% Similarity=-0.035 Sum_probs=89.6
Q ss_pred EEEEeecCCeEEEEEccCcceee-eeccCCCceEEEEEeCCCCceEEEeeC----CC-------CEEEEecCCCeeEEEe
Q 019117 100 FLVAGGINGIIRVIDVSNEKLHK-SFVGHGDSINEIRTQPLKPSLVVSASK----DE-------SVRLWNVQTGICILIF 167 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~----d~-------~i~iwd~~~~~~~~~~ 167 (346)
+++.|+ ..+.+||..+++-.. .+.............. ++.+++.|+. ++ .+.+||..+.+-. .+
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~-~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL-GM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE-EC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEE-EC
Confidence 445555 578999998876322 2221111222222223 6677777773 11 2778888876532 22
Q ss_pred cccCCCCcceEEEEecCCCCcEEEEEecC--------CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeec
Q 019117 168 AGAGGHRNEVLSVDFHPSDIYRIASCGMD--------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 239 (346)
Q Consensus 168 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (346)
......... .+++.. ++.+++.|+.+ ..+.+||+.+..- ...+. +...
T Consensus 83 ~~~p~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W--------~~~~~-------------~p~~ 138 (315)
T 4asc_A 83 PPLPSPRCL-FGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKW--------GESDP-------------LPYV 138 (315)
T ss_dssp CCBSSCEES-CEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEE--------EECCC-------------CSSC
T ss_pred CCCCcchhc-eeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcE--------eECCC-------------CCCc
Confidence 211011111 123332 56677777742 3588888876321 11100 0000
Q ss_pred ccceEEEEecCCEEEEEee-c-----CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCC
Q 019117 240 SNYVDCNRWLGDFILSKSV-D-----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG 313 (346)
Q Consensus 240 ~~~i~~~~~~~~~l~~~~~-d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg 313 (346)
...-.++...+.+++.|+. + ..+.+||+.+.+- ..+..+......- .+...++ .+++.|+.++
T Consensus 139 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W-------~~~~~~p~~r~~~--~~~~~~~--~iyv~GG~~~ 207 (315)
T 4asc_A 139 VYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW-------KELAPMQTARSLF--GATVHDG--RIIVAAGVTD 207 (315)
T ss_dssp CBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEE-------EECCCCSSCCBSC--EEEEETT--EEEEEEEECS
T ss_pred ccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeE-------EECCCCCCchhce--EEEEECC--EEEEEeccCC
Confidence 0111222333666677766 2 4688899877531 1111121111111 1222355 5666666543
Q ss_pred -----cEEEEEcCCCC
Q 019117 314 -----KIFVWELQSSP 324 (346)
Q Consensus 314 -----~i~iwd~~~~~ 324 (346)
.+.+||+.+.+
T Consensus 208 ~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 208 TGLTSSAEVYSITDNK 223 (315)
T ss_dssp SSEEEEEEEEETTTTE
T ss_pred CCccceEEEEECCCCe
Confidence 58889988764
No 324
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.19 E-value=0.36 Score=38.63 Aligned_cols=239 Identities=13% Similarity=0.110 Sum_probs=132.3
Q ss_pred CccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccC-cceeeeecc
Q 019117 48 YFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN-EKLHKSFVG 126 (346)
Q Consensus 48 ~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~ 126 (346)
..+.+|.-....+.+||+.+...++... -.+.|.-=.|. .+. .|+... +..|.-|++.. ..+++.+..
T Consensus 77 ~~~ViALrag~~LQiFnletK~klks~~------~~e~VvfWkWi--s~~--~L~lVT-~taVyHWs~~~~s~P~kvFdR 145 (365)
T 2xzh_A 77 ASKVIALKAGKTLQIFNIEMKSKMKAHT------MTDDVTFWKWI--SLN--TVALVT-DNAVYHWSMEGESQPVKMFDR 145 (365)
T ss_dssp SSSEEEEEETTEEEEEETTTTEEEEEEE------CSSCEEEEEEC--SSS--EEEEEE-SSEEEEEESSTTCCCEEEEEC
T ss_pred CccEEEEecCCeEEEechHHhhhhccee------cCCccEEEEec--CCC--eEEEEc-CCcEEEEcccCCCCCceeeec
Confidence 5578888776669999999888777665 33455444443 443 455555 45799999874 345555554
Q ss_pred C----CCceEEEEEeCCCCceEEEee-------CCCCEEEEecCCCeeEEEecccCCCCcceEEEEecC--CCCcEEEEE
Q 019117 127 H----GDSINEIRTQPLKPSLVVSAS-------KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP--SDIYRIASC 193 (346)
Q Consensus 127 ~----~~~v~~~~~~~~~~~~l~s~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~s~ 193 (346)
| ...|.....++ +.++++..+ -.|.+.+|..+.+ ..+.+. +|......+.+.- ....+++-+
T Consensus 146 ~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ie---Ghaa~F~~~~~~g~~~~~~lf~fa 220 (365)
T 2xzh_A 146 HSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE---GHAASFAQFKMEGNAEESTLFCFA 220 (365)
T ss_dssp CGGGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEEC---CSEEEEEEECCTTCSSCEEEEEEE
T ss_pred chhcccceEEEEEECC-CCCEEEEEeEeccCCccceeEEEEeeccc-ccceee---eeeeeeEEEecCCCCCCceEEEEE
Confidence 4 34677777788 555554332 2367888988643 344555 6765554444331 012233333
Q ss_pred ec---CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCC
Q 019117 194 GM---DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPK 268 (346)
Q Consensus 194 ~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~ 268 (346)
.. .+++++-++..... ....+..+... ..+....-.+--.++..+ -..+..-+.-|.|.+||+.
T Consensus 221 ~r~~~g~kLhIiEi~~~~~----------~~~~f~kk~vd-i~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDle 289 (365)
T 2xzh_A 221 VRGQAGGKLHIIEVGTPPT----------GNQPFPKKAVD-VFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE 289 (365)
T ss_dssp EEETTEEEEEEEECSSCCT----------TCCCCCCEEEE-ECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETT
T ss_pred EecCCCcEEEEEEcCCCCC----------CCCCcccccce-eeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcc
Confidence 22 25788888754200 00011110000 000011122334455555 4577778889999999999
Q ss_pred CCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 269 MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
++. ++..-+-....|...+...... =+++....|.|.--.+....
T Consensus 290 Tgt---------~i~~nrIS~d~iF~ta~~~~~~--Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 290 TGT---------CIYMNRISGETIFVTAPHEATA--GIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp TCC---------EEEEEECCSSCEEEEEEEGGGT--EEEEEETTCEEEEEEECTTT
T ss_pred cCc---------EEEEeccCCCceEEecccCCCC--cEEEEcCCCEEEEEEECccc
Confidence 987 4444444444554444443332 24444466776666666554
No 325
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.15 E-value=1 Score=43.85 Aligned_cols=197 Identities=14% Similarity=0.135 Sum_probs=105.3
Q ss_pred CccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccC-cceeeeecc
Q 019117 48 YFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN-EKLHKSFVG 126 (346)
Q Consensus 48 ~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~ 126 (346)
..+++|.-.+..+.|||+.+...++... -.+.|.-=.|. .+. .|+..+ +..|.-|++.. ..+++.+..
T Consensus 76 ~~~iiALrag~~lQiFnl~~k~klks~~------~~e~VvfWkWi--s~~--~l~lVT-~~aVyHW~~~~~s~P~k~fdR 144 (1630)
T 1xi4_A 76 ASKVIALKAGKTLQIFNIEMKSKMKAHT------MTDDVTFWKWI--SLN--TVALVT-DNAVYHWSMEGESQPVKMFDR 144 (1630)
T ss_pred CcceEEEecCCeEEEeehHHhhhhcccc------cCCCceEEEec--CCC--eeEEEc-CCeEEEeccCCCCccHHHHhc
Confidence 4567887775569999998877766654 23344334443 443 455554 45799999964 244444544
Q ss_pred C----CCceEEEEEeCCCCceEEEee-------CCCCEEEEecCCCeeEEEecccCCCCcceEEEEec--CCCCcEEEEE
Q 019117 127 H----GDSINEIRTQPLKPSLVVSAS-------KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH--PSDIYRIASC 193 (346)
Q Consensus 127 ~----~~~v~~~~~~~~~~~~l~s~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~s~ 193 (346)
| ...|..-..++ +.++++..| -.|.+.+|..+.+ ..+.+. ||......+... +....+++.+
T Consensus 145 ~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~ie---gha~~F~~~~~~~~~~~~~l~~f~ 219 (1630)
T 1xi4_A 145 HSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE---GHAASFAQFKMEGNAEESTLFCFA 219 (1630)
T ss_pred chhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeeeeecccc-cchhhh---HhHhhhheeccCCCCCCceEEEEE
Confidence 4 45677777788 555554332 3477888887643 233333 455444333332 1112222222
Q ss_pred ec---CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCC
Q 019117 194 GM---DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPK 268 (346)
Q Consensus 194 ~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~ 268 (346)
.. .+.++|-++...... ...+..+.... .+....-.+--.++..+ -..+...+.-|.|.++|+.
T Consensus 220 ~~~~~g~kLhi~Ei~~~~~~----------~~~f~kk~~~~-~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~ 288 (1630)
T 1xi4_A 220 VRGQAGGKLHIIEVGTPPTG----------NQPFPKKAVDV-FFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE 288 (1630)
T ss_pred EecCCCceEEEEecCCCccC----------CCCCccccccc-cCCcccccCcceEEEeccccCEEEEEecCceEEEEecc
Confidence 11 268888888652000 00111110000 00011112223344444 4467777888999999999
Q ss_pred CCC
Q 019117 269 MKE 271 (346)
Q Consensus 269 ~~~ 271 (346)
++.
T Consensus 289 t~~ 291 (1630)
T 1xi4_A 289 TGT 291 (1630)
T ss_pred cch
Confidence 987
No 326
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.14 E-value=0.78 Score=41.96 Aligned_cols=238 Identities=12% Similarity=0.036 Sum_probs=119.4
Q ss_pred CceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCC--CccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 019117 34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDED--KEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 111 (346)
..|.++.-.. ++.+.+.. .+++..|+..++.. ..+....... ....|.++. .+.+|. |..|+..+-|.
T Consensus 373 ~~v~~i~~d~----~g~lWigt-~~GL~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~i~--~d~~g~--lWigT~~~Gl~ 442 (758)
T 3ott_A 373 NRIRHIYEDK----EQQLWIAT-DGSINRYDYATRQF-IHYNIVDNTGTYNTNWTYYIF--EDTAGQ--LWISTCLGGIF 442 (758)
T ss_dssp SCEEEEEECT----TSCEEEEE-TTEEEEEETTTTEE-EEEEEECCC--CBSSSEEEEE--ECTTSE--EEEEESSSCEE
T ss_pred CceEEEEECC----CCCEEEEe-CCcHhhcCcCCCcE-EEeecCCCcCCCCCceEEEEE--EcCCCC--EEEEECCCceE
Confidence 3577776544 55655544 56899999766543 2222111000 123454443 335664 66677666688
Q ss_pred EEEccCc-----cee---eeec---c-CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEE
Q 019117 112 VIDVSNE-----KLH---KSFV---G-HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS 179 (346)
Q Consensus 112 iwd~~~~-----~~~---~~~~---~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 179 (346)
++|..+. ... ..+. + ....|.++...+ ++.+.+.++..+-|..+|..+++..............+.+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~ 521 (758)
T 3ott_A 443 VVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNY 521 (758)
T ss_dssp EEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEE
T ss_pred EEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccce
Confidence 8886531 111 1111 1 123588888877 5665553333355888998877654432210011346788
Q ss_pred EEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeec
Q 019117 180 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVD 259 (346)
Q Consensus 180 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d 259 (346)
+.... ++.+.+ |+.. -+..||..+..... + . .. ......|.++......|..++..
T Consensus 522 i~~d~-~g~lWi-gt~~-Gl~~~~~~~~~~~~---~---------~-------~~--gl~~~~i~~i~~~~g~lWi~t~~ 577 (758)
T 3ott_A 522 LLCDE-DGLLWV-GFHG-GVMRINPKDESQQS---I---------S-------FG--SFSNNEILSMTCVKNSIWVSTTN 577 (758)
T ss_dssp EEECT-TSCEEE-EETT-EEEEECC--CCCCB---C---------C-------CC--C---CCEEEEEEETTEEEEEESS
T ss_pred EEECC-CCCEEE-EecC-ceEEEecCCCceEE---e---------c-------cc--CCCccceEEEEECCCCEEEECCC
Confidence 88775 666554 4444 47778766521100 0 0 00 00123455555554556666655
Q ss_pred CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEe-ecCCcceEEEEcCCCcEEEEEcC
Q 019117 260 NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS-CDFHYNAAAIGNREGKIFVWELQ 321 (346)
Q Consensus 260 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~~~l~~~~~dg~i~iwd~~ 321 (346)
| +..+|..+.+. ..+......+....+. ++| .|..|+.+|.+ .++.+
T Consensus 578 G-l~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~G---~l~fG~~~Gl~-~f~p~ 625 (758)
T 3ott_A 578 G-LWIIDRKTMDA----------RQQNMTNKRFTSLLFDPKED---CVYLGGADGFG-ISHSN 625 (758)
T ss_dssp C-EEEEETTTCCE----------EEC--CCCCCSEEEEETTTT---EEEEECBSEEE-EEEC-
T ss_pred C-eEEEcCCCcee----------EEecCCCCceeeeEEECCCC---cEEEecCCceE-EEChh
Confidence 5 77888876542 1111112223333333 355 57777777754 44543
No 327
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.04 E-value=0.48 Score=38.67 Aligned_cols=159 Identities=9% Similarity=0.076 Sum_probs=88.9
Q ss_pred ceEEEEEEeecCCCccEEEEEcC--C-cEEEEEeccCc-eeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEee-----
Q 019117 35 PLYAVVFNFIDSRYFNVFATVGG--N-RVTVYQCLEGG-VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG----- 105 (346)
Q Consensus 35 ~v~~~~~~p~~~~~~~~la~~~~--~-~v~i~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~----- 105 (346)
....+.+.++......++++-.. + .|.+|++..+. ....+..+.. ..-.....+.+. ++|. +.++..
T Consensus 113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g-~~~~~pND~~v~--~~G~-fyvt~~~~ftd 188 (355)
T 3sre_A 113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH-KLLPSVNDIVAV--GPEH-FYATNDHYFID 188 (355)
T ss_dssp CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC-TTCSSEEEEEEE--ETTE-EEEEESCSCSS
T ss_pred eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecccc-CCCCCCceEEEe--CCCC-EEecCCcEeCC
Confidence 45567776631112235555443 2 28898887653 3333444432 234556677776 7887 666643
Q ss_pred ------------cCCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceE-EEeeCCCCEEEEecCC-Cee--EEEecc
Q 019117 106 ------------INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV-VSASKDESVRLWNVQT-GIC--ILIFAG 169 (346)
Q Consensus 106 ------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~-~~~--~~~~~~ 169 (346)
..|.|.-+|. ++ +..+...-...+.++|+| +++.| ++-+..+.|..|++.. ++. ...+.
T Consensus 189 ~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~sp-Dg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~- 263 (355)
T 3sre_A 189 PYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISP-DGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS- 263 (355)
T ss_dssp HHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-
T ss_pred cccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECC-CCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-
Confidence 1244555554 33 222332334578999999 66554 4455678999999863 322 22332
Q ss_pred cCCCCcceEEEEecCCCCcEEEEEecC-CeEEEEEcc
Q 019117 170 AGGHRNEVLSVDFHPSDIYRIASCGMD-NTVKIWSMK 205 (346)
Q Consensus 170 ~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~iwd~~ 205 (346)
..+..-.+++.++++++.+++..+ +.|..|+..
T Consensus 264 ---~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 264 ---FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp ---CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred ---CCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 346778889986237777666544 344444443
No 328
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.98 E-value=0.52 Score=38.57 Aligned_cols=105 Identities=10% Similarity=0.026 Sum_probs=57.8
Q ss_pred CCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeee-cCCCccceEEEEEEEcCC---CCcEEEEeec--
Q 019117 33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYV-DEDKEESFYTVSWACNVD---GIPFLVAGGI-- 106 (346)
Q Consensus 33 ~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~---~~~~l~~~~~-- 106 (346)
-.....|+|.| +|+++++-..+.|.+++ .++. ..+.... ..........+++. |+ +. .|+.+..
T Consensus 28 l~~P~~ia~~p----dG~l~V~e~~g~I~~~d-~~G~--~~~~~~~v~~~g~~g~~gia~~--pdf~~~g-~lyv~~~~~ 97 (354)
T 3a9g_A 28 LEVPWSIAPLG----GGRYLVTERPGRLVLIS-PSGK--KLVASFDVANVGEAGLLGLALH--PEFPKKS-WVYLYASYF 97 (354)
T ss_dssp CSCEEEEEEEE----TTEEEEEETTTEEEEEC-SSCE--EEEEECCCCCSTTCSEEEEEEC--TTTTTSC-EEEEEEEEE
T ss_pred CCCCeEEEEcC----CCeEEEEeCCCEEEEEe-CCCc--eEeeccceeecCCCceeeEEeC--CCCCcCC-EEEEEEecc
Confidence 34568999999 78888887766688886 3443 3332211 01112345555554 76 33 3444332
Q ss_pred --C----CeEEEEEccCc-------cee-eeecc-CCCceEEEEEeCCCCceEEEee
Q 019117 107 --N----GIIRVIDVSNE-------KLH-KSFVG-HGDSINEIRTQPLKPSLVVSAS 148 (346)
Q Consensus 107 --d----g~i~iwd~~~~-------~~~-~~~~~-~~~~v~~~~~~~~~~~~l~s~~ 148 (346)
+ ..|..|+.... +.+ ..+.. .......++|.| ++.++++.+
T Consensus 98 ~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G 153 (354)
T 3a9g_A 98 AEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTG 153 (354)
T ss_dssp CGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECC
T ss_pred CCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEEC
Confidence 3 56777776543 111 11221 111346799999 777666644
No 329
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.61 E-value=0.75 Score=37.62 Aligned_cols=100 Identities=20% Similarity=0.154 Sum_probs=56.2
Q ss_pred EEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc-eeeeec---cCCCceEEEEEeCC---CCceEEEeeC---C----CC
Q 019117 87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-LHKSFV---GHGDSINEIRTQPL---KPSLVVSASK---D----ES 152 (346)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~~l~s~~~---d----~~ 152 (346)
..++|. |+|+ ++ ++..+|.|.+++ .+++ .+..+. ........|+++|+ ++.++++-+. + ..
T Consensus 32 ~~ia~~--pdG~-l~-V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 32 WSIAPL--GGGR-YL-VTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp EEEEEE--ETTE-EE-EEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred eEEEEc--CCCe-EE-EEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 446665 8887 44 445569999997 3444 222221 12346789999993 2444444332 3 56
Q ss_pred EEEEecCCC-------eeE-EEecccCCCCcceEEEEecCCCCcEEEEEe
Q 019117 153 VRLWNVQTG-------ICI-LIFAGAGGHRNEVLSVDFHPSDIYRIASCG 194 (346)
Q Consensus 153 i~iwd~~~~-------~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 194 (346)
|..|+.... +.+ ..+.....| ....|+|.| ++.++++.+
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h--~~~~l~~~p-DG~Lyvt~G 153 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIH--NGGRIRFGP-DGMLYITTG 153 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSC--CCCCEEECT-TSCEEEECC
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCc--CCceEEECC-CCcEEEEEC
Confidence 777777643 111 112211112 346799999 777777654
No 330
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.50 E-value=0.82 Score=37.36 Aligned_cols=57 Identities=9% Similarity=-0.031 Sum_probs=37.4
Q ss_pred cCeeEEEEeecC-----CcceEEEEcCCCcEEEEEcCCCCcceeeee----eeeEEEEEecCCCCC
Q 019117 290 CDIWFIKFSCDF-----HYNAAAIGNREGKIFVWELQSSPPVLIARL----ICFSLHVKYNPQSVY 346 (346)
Q Consensus 290 ~~v~~~~~s~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~spdg~~ 346 (346)
..+..+.|.... ++.++++.-..+.|...++..++......+ ...+..+++.|||.+
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~l 336 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYL 336 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcE
Confidence 356778886421 126777777788888888886543322222 235788999999863
No 331
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.45 E-value=0.96 Score=37.86 Aligned_cols=239 Identities=13% Similarity=0.102 Sum_probs=132.5
Q ss_pred CccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCc-ceeeeecc
Q 019117 48 YFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-KLHKSFVG 126 (346)
Q Consensus 48 ~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~ 126 (346)
..+.+|.-....+.|||+.+...++... -.+.|.-=.|. .+. .|+... +..|.-|++... .+++.+..
T Consensus 76 ~~~iiALrag~~lQiFnle~K~klks~~------~~e~VvfWkWi--s~~--~l~lVT-~taVyHWsi~~~s~P~kvFdR 144 (494)
T 1bpo_A 76 ASKVIALKAGKTLQIFNIEMKSKMKAHT------MTDDVTFWKWI--SLN--TVALVT-DNAVYHWSMEGESQPVKMFDR 144 (494)
T ss_dssp SSSCEEEEETTEEEEEETTTTEEEEEEE------CSSCCCEEEEE--ETT--EEEEEC-SSEEEEEESSSSCCCEEEEEC
T ss_pred CCcEEEEecCCeEEEEchHHhhhhccee------cCCCceEEEec--CCC--eEEEEc-CCeeEEecccCCCCchhheec
Confidence 4577888776669999998887777665 23345444554 333 455554 468999998643 45555554
Q ss_pred C----CCceEEEEEeCCCCceEEEee-------CCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCC--CCcEEEEE
Q 019117 127 H----GDSINEIRTQPLKPSLVVSAS-------KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS--DIYRIASC 193 (346)
Q Consensus 127 ~----~~~v~~~~~~~~~~~~l~s~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~ 193 (346)
| ...|.....++ +.++++..+ -.|.+.+|..+.+ ..+.+. +|......+.+.-+ ...+++-+
T Consensus 145 ~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ie---Ghaa~F~~~~~~g~~~~~~lf~fa 219 (494)
T 1bpo_A 145 HSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE---GHAASFAQFKMEGNAEESTLFCFA 219 (494)
T ss_dssp CGGGTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEEC---CSEEEEEEEECTTCSSEEEEEEEE
T ss_pred chhcccceEEEEEECC-CCCeEEEEeecccCCcccceEEEeecccc-ccchhe---eeeeeeEEEecCCCCCCceEEEEE
Confidence 4 34677777888 556555332 2467889988643 445555 67666655554320 11233333
Q ss_pred ec---CCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec--CCEEEEEeecCeEEEEcCC
Q 019117 194 GM---DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPK 268 (346)
Q Consensus 194 ~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~ 268 (346)
.. .+.+++-++..... ....+..+. ....+....-.+--.++..+ -..+..-+.-|.|.+||+.
T Consensus 220 ~r~~~g~kLhi~Ei~~~~~----------~~~~f~kk~-vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDle 288 (494)
T 1bpo_A 220 VRGQAGGKLHIIEVGTPPT----------GNQPFPKKA-VDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE 288 (494)
T ss_dssp ECSTTCCEEEEEECSCCCT----------TCCCCCCEE-EECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETT
T ss_pred EecCCCcEEEEEEcCCCcc----------CCCCcccee-eeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecc
Confidence 33 26888888865200 000000000 00000001112333445555 4567778889999999999
Q ss_pred CCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCC
Q 019117 269 MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (346)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (346)
++. ++..-+.....|...+...... =+++....|.|.--.+....
T Consensus 289 Tgt---------~i~~nrIs~~~iF~t~~~~~~~--Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 289 TGT---------CIYMNRISGETIFVTAPHEATA--GIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp TCC---------EEEEEECCSSCEEEEEEETTTT--EEEEEETTCEEEEEEECTTT
T ss_pred cce---------eeeeecccCCceEEecccCCCC--cEEEEccCceEEEEEEcccc
Confidence 987 4444433444554444443332 23444466666666665554
No 332
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.45 E-value=0.78 Score=36.73 Aligned_cols=185 Identities=11% Similarity=0.061 Sum_probs=87.4
Q ss_pred EEEEeecCCeEEEEEccCcceee-eecc-CCCceEEEEEeCCCCceEEEeeC----CC---C----EEEEecCCCeeEEE
Q 019117 100 FLVAGGINGIIRVIDVSNEKLHK-SFVG-HGDSINEIRTQPLKPSLVVSASK----DE---S----VRLWNVQTGICILI 166 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~~l~s~~~----d~---~----i~iwd~~~~~~~~~ 166 (346)
+++.|+. .+..||..+.+-.. .+.. ....-.+++ .. ++.+++.|+. ++ . +.++|..+.+-..
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~- 92 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIV-TQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVG- 92 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEE-CS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEE-
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEE-EE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEE-
Confidence 4555553 47899988776333 2221 111122333 23 6677777773 12 1 7778887665432
Q ss_pred ecccCCCCcceEEEEecCCCCcEEEEEecC-------CeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeec
Q 019117 167 FAGAGGHRNEVLSVDFHPSDIYRIASCGMD-------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 239 (346)
Q Consensus 167 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (346)
+......... .+++.. ++.+++.|+.+ ..+.+||+.+..-..... . +. ....|
T Consensus 93 ~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-----~-----------p~-~r~~~ 152 (318)
T 2woz_A 93 LPPLPSARCL-FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN-----L-----------PI-KVYGH 152 (318)
T ss_dssp CSCBSSCBCS-CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC-----C-----------SS-CEESC
T ss_pred CCCCCccccc-cceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC-----C-----------CC-ccccc
Confidence 2211011111 223333 56677777754 247777877632111100 0 00 01112
Q ss_pred ccceEEEEecCCEEEEEeec------CeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCC-
Q 019117 240 SNYVDCNRWLGDFILSKSVD------NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE- 312 (346)
Q Consensus 240 ~~~i~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d- 312 (346)
.++...+.+++.|+.+ ..+.+||+.+.+- ..+.........- ++ ...++ .+++.|+.+
T Consensus 153 ----~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W-------~~~~~~p~~r~~~-~~-~~~~~--~iyv~GG~~~ 217 (318)
T 2woz_A 153 ----NVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW-------KDLAPMKTPRSMF-GV-AIHKG--KIVIAGGVTE 217 (318)
T ss_dssp ----EEEEETTEEEEECCEESSSCBCCCEEEEETTTTEE-------EEECCCSSCCBSC-EE-EEETT--EEEEEEEEET
T ss_pred ----EEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEE-------EECCCCCCCcccc-eE-EEECC--EEEEEcCcCC
Confidence 1222336666777652 3588999887541 1121122111111 12 22344 566666543
Q ss_pred ----CcEEEEEcCCCC
Q 019117 313 ----GKIFVWELQSSP 324 (346)
Q Consensus 313 ----g~i~iwd~~~~~ 324 (346)
..+.+||+.+.+
T Consensus 218 ~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 218 DGLSASVEAFDLKTNK 233 (318)
T ss_dssp TEEEEEEEEEETTTCC
T ss_pred CCccceEEEEECCCCe
Confidence 357789988765
No 333
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.45 E-value=0.85 Score=37.18 Aligned_cols=94 Identities=14% Similarity=0.105 Sum_probs=46.5
Q ss_pred CCCcEEEEeec-CCeEEEEEccC--cc--eeeeec-cCCCceEEEEEeCCCCceEEEeeC-C---------CCEEEEecC
Q 019117 96 DGIPFLVAGGI-NGIIRVIDVSN--EK--LHKSFV-GHGDSINEIRTQPLKPSLVVSASK-D---------ESVRLWNVQ 159 (346)
Q Consensus 96 ~~~~~l~~~~~-dg~i~iwd~~~--~~--~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~-d---------~~i~iwd~~ 159 (346)
+++ +++.|+. ...+.+||+.+ .+ .+..+. ...... +++.. ++.+++.|+. + ..+.+||+.
T Consensus 19 ~~~-iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~ 94 (357)
T 2uvk_A 19 NDT-VYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQA-TSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPK 94 (357)
T ss_dssp TTE-EEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSC-EEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred CCE-EEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccc-eEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence 455 5555553 45788899864 22 222222 111122 22222 4667777775 2 468899998
Q ss_pred CCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecC
Q 019117 160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 196 (346)
Q Consensus 160 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 196 (346)
+.+-...-...........++. . ++.+++.|+.+
T Consensus 95 ~~~W~~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~ 128 (357)
T 2uvk_A 95 TNSWVKLMSHAPMGMAGHVTFV--H-NGKAYVTGGVN 128 (357)
T ss_dssp TTEEEECSCCCSSCCSSEEEEE--E-TTEEEEEECCC
T ss_pred CCcEEECCCCCCcccccceEEE--E-CCEEEEEeCcC
Confidence 7653322211000111122222 2 67778888754
No 334
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.25 E-value=1.8 Score=39.64 Aligned_cols=253 Identities=10% Similarity=0.055 Sum_probs=120.5
Q ss_pred CceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeec-CCCccceEEEEEEEcCCCCcEEEEeecCCeEEE
Q 019117 34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVD-EDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 112 (346)
..|.++.... ++.+.+.. .+++..++..++.. ..+..... ......|.++.. ..++. .|..|.. +-+..
T Consensus 146 ~~i~~i~~d~----~g~lWigt-~~Gl~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~--d~~~~-~lWigt~-~Gl~~ 215 (758)
T 3ott_A 146 NTIYSIIRTK----DNQIYVGT-YNGLCRYIPSNGKF-EGIPLPVHSSQSNLFVNSLLE--DTTRQ-CVWIGTE-GYLFQ 215 (758)
T ss_dssp SCEEEEEECT----TCCEEEEE-TTEEEEEETTTTEE-EEECCCCCTTCSSCCEEEEEE--ETTTT-EEEEEEE-EEEEE
T ss_pred CeEEEEEEcC----CCCEEEEe-CCCHhhCccCCCce-EEecCCCccccccceeEEEEE--ECCCC-EEEEEEC-CCCeE
Confidence 4577766544 45666544 56788888655432 22211000 001223554443 35555 5555664 45888
Q ss_pred EEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEeccc----CCCCcceEEEEecCCCCc
Q 019117 113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA----GGHRNEVLSVDFHPSDIY 188 (346)
Q Consensus 113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~ 188 (346)
+|..+++...........|.++...+ ++. |..|+.+ -+.+++..+++........ .-....|.++.... ++.
T Consensus 216 ~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~-lWigT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-~g~ 291 (758)
T 3ott_A 216 YFPSTGQIKQTEAFHNNSIKSLALDG-NGD-LLAGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQ-EHN 291 (758)
T ss_dssp EETTTTEEEEEEEEEEEEEEEEEECT-TCC-EEEEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECT-TCC
T ss_pred EcCCCCeEEeccCCCCCeEEEEEEcC-CCC-EEEEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcC-CCC
Confidence 88876653322111234577887765 444 4445544 4888888765433222110 01234688988876 555
Q ss_pred EEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEcC
Q 019117 189 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEP 267 (346)
Q Consensus 189 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~ 267 (346)
|-.|+..| +.++......... ... .. ........|.++.-+ ...|..|+.+ -+..++.
T Consensus 292 -lWiGT~~G-l~~~~~~~~~~~~----~~~-------------~~-~~~~~~~~v~~i~~D~~g~lWiGt~~-Gl~~~~~ 350 (758)
T 3ott_A 292 -IWLGTDYG-ISLSRYNSALQFI----PIS-------------QI-TGTGDGNQFYSLFRDSKGFYWFGGAN-GLIRFTD 350 (758)
T ss_dssp -EEEEESSS-EEEECCCC-CEEE----EHH-------------HH-SCSCCCCBEEEEEECTTCCEEEEETT-EEEEESC
T ss_pred -EEEEeCCc-ccccccCCceeEE----ecc-------------cC-CCCCCCceEEEEEEcCCCCEEEeeCC-cceeecc
Confidence 44444556 5443221100000 000 00 000112346676665 4455566654 4667776
Q ss_pred CCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCc
Q 019117 268 KMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP 325 (346)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~ 325 (346)
.+++....................|.++.-..++ .|-.|+. +-|..||..+++.
T Consensus 351 ~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g---~lWigt~-~GL~~~~~~~~~~ 404 (758)
T 3ott_A 351 PAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQ---QLWIATD-GSINRYDYATRQF 404 (758)
T ss_dssp TTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTS---CEEEEET-TEEEEEETTTTEE
T ss_pred cccccceeEEeccCCcCCCCCCCceEEEEECCCC---CEEEEeC-CcHhhcCcCCCcE
Confidence 5432110000000000001122457777666665 2444443 5688999887653
No 335
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.09 E-value=1.1 Score=36.55 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=21.2
Q ss_pred CceEEEEEEeecCCCcc-EEEEEcCCcEEEEEe
Q 019117 34 RPLYAVVFNFIDSRYFN-VFATVGGNRVTVYQC 65 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~-~la~~~~~~v~i~~~ 65 (346)
.....|+|.| +|+ ++++-..+.|++++.
T Consensus 18 ~~P~~i~~~p----dG~~l~V~e~~G~i~~~~~ 46 (353)
T 2g8s_A 18 DHPWALAFLP----DNHGMLITLRGGELRHWQA 46 (353)
T ss_dssp SSEEEEEECS----TTCCEEEEETTTEEEEEET
T ss_pred CCcEEEEEcC----CCCEEEEEeCCceEEEEeC
Confidence 3467899998 788 887776655888873
No 336
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.73 E-value=0.72 Score=34.62 Aligned_cols=152 Identities=5% Similarity=-0.096 Sum_probs=74.3
Q ss_pred CceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeE--eeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEE
Q 019117 34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAAL--QSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 111 (346)
..+.+++|+| +|.+.|+ ..+.+.-.+..++....-+ .......--.... +..++++|. +.++ .||.|.
T Consensus 41 ~~~~~laf~P----~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~--a~~fD~~G~-LYav--~dG~iy 110 (236)
T 1tl2_A 41 SNFKFLFLSP----GGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQ--FLFFDPNGY-LYAV--SKDKLY 110 (236)
T ss_dssp TTCSEEEECT----TSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCS--EEEECTTSC-EEEE--ETTEEE
T ss_pred ccceeEEECC----CccEEEE-eCCeEEEECCCCCCcccccccccEecccccccce--EEEECCCCC-EEEe--CCCEEE
Confidence 4677999999 7888888 4554433332221110000 0000000001122 344569997 5555 569888
Q ss_pred EEEccCcc-ee------eeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCee------EEEecccCCCCcceE
Q 019117 112 VIDVSNEK-LH------KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC------ILIFAGAGGHRNEVL 178 (346)
Q Consensus 112 iwd~~~~~-~~------~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~v~ 178 (346)
-++.-+.. .. ..-..-=..+..|.+.| ++.+.+.. |+.+.-+...++.. ...+.. ..-..-+
T Consensus 111 r~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~--~g~~~yr 185 (236)
T 1tl2_A 111 KASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQ--GGWDTFK 185 (236)
T ss_dssp EESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEES--SSGGGEE
T ss_pred EeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCCCCcccccccceecc--CCcceEE
Confidence 77753321 11 11111124679999999 77666665 77754333322110 111110 1222345
Q ss_pred EEEecCCCCcEEEEEecCCeEEEEEcc
Q 019117 179 SVDFHPSDIYRIASCGMDNTVKIWSMK 205 (346)
Q Consensus 179 ~~~~~~~~~~~l~s~~~d~~i~iwd~~ 205 (346)
.+.|.| ++.+.+.. ++ ++|...
T Consensus 186 ~l~f~~-~G~l~~v~--~g--~~Y~~~ 207 (236)
T 1tl2_A 186 FLFFSS-VGTLFGVQ--GG--KFYEDY 207 (236)
T ss_dssp EEEECT-TSCEEEEE--TT--EEEEES
T ss_pred EEEECC-CCcEEEEe--CC--eEEecC
Confidence 567887 77655554 66 444443
No 337
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.09 E-value=4.9 Score=36.34 Aligned_cols=107 Identities=13% Similarity=0.127 Sum_probs=57.9
Q ss_pred CCCCcEEEEeecC----CeEEEEEccCcceeeee--------ccCCCceEEEEEeCCCCceEEEeeCCC------CEEEE
Q 019117 95 VDGIPFLVAGGIN----GIIRVIDVSNEKLHKSF--------VGHGDSINEIRTQPLKPSLVVSASKDE------SVRLW 156 (346)
Q Consensus 95 ~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~l~s~~~d~------~i~iw 156 (346)
.++. +++.|+.+ ..+.+||..+.+-...- ......-..+.+.. ++.+++.|+.++ .+.+|
T Consensus 396 ~~~~-iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGND-VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSC-EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEE
T ss_pred ECCE-EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEE
Confidence 4455 77777643 46888998776532221 11112223333432 456777777543 57889
Q ss_pred ecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCC--eEEEEEccc
Q 019117 157 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN--TVKIWSMKE 206 (346)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~ 206 (346)
|+.+.+-... .........- +++... ++.+++.|+.++ .+.+||+.+
T Consensus 474 d~~t~~W~~~-~~~p~~R~~h-~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t 522 (695)
T 2zwa_A 474 DMKTREWSMI-KSLSHTRFRH-SACSLP-DGNVLILGGVTEGPAMLLYNVTE 522 (695)
T ss_dssp ETTTTEEEEC-CCCSBCCBSC-EEEECT-TSCEEEECCBCSSCSEEEEETTT
T ss_pred eCCCCcEEEC-CCCCCCcccc-eEEEEc-CCEEEEECCCCCCCCEEEEECCC
Confidence 9887643322 1100111122 233322 677888887655 688898877
No 338
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.00 E-value=3.1 Score=33.81 Aligned_cols=262 Identities=11% Similarity=0.031 Sum_probs=126.1
Q ss_pred eeecccCCCceEEEEEEeecCCCccEEEEEc-CCcEEEEEeccCceeeeEeeee--cCCCccceEEEEEEEcCC----CC
Q 019117 26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVG-GNRVTVYQCLEGGVIAALQSYV--DEDKEESFYTVSWACNVD----GI 98 (346)
Q Consensus 26 ~~~~~~h~~~v~~~~~~p~~~~~~~~la~~~-~~~v~i~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~----~~ 98 (346)
...+...-...+.|+|.| +|.+|++-. .+.|++++...+.. ..+.... ..........+++. |+ +.
T Consensus 24 ~~~va~gL~~P~~ia~~p----dG~llVter~~G~I~~v~~~~g~~-~~v~~~~~v~~~g~~GllGia~~--Pdf~~~g~ 96 (347)
T 3das_A 24 LRTVATGLNSPWGLAPLP----GGDLLVSSRDEATITRVDAKTGRK-TELGEVPGVSPSGEGGLLGIALS--PDYASDHM 96 (347)
T ss_dssp EEEEECCCSSEEEEEECT----TSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCBTTBSEEEEEEC--TTHHHHCE
T ss_pred eEEeecCCCCceEEEEcC----CCcEEEEEecCCEEEEEECCCCcE-eeecccCceeecCCCCceeeEec--cccccCCE
Confidence 334444455678999999 788988887 44588887544433 2222110 01123455556654 64 43
Q ss_pred cEEEEe--ecCCeEEEEEccCc----------cee-eeecc-CCCceEEEEEeCCCCceEEEeeC-------------CC
Q 019117 99 PFLVAG--GINGIIRVIDVSNE----------KLH-KSFVG-HGDSINEIRTQPLKPSLVVSASK-------------DE 151 (346)
Q Consensus 99 ~~l~~~--~~dg~i~iwd~~~~----------~~~-~~~~~-~~~~v~~~~~~~~~~~~l~s~~~-------------d~ 151 (346)
+.++- ..++.|.-|.+..+ +.+ ..+.. ....-..|.|.| ++.++++.++ -|
T Consensus 97 -lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G 174 (347)
T 3das_A 97 -VYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGG 174 (347)
T ss_dssp -EEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTT
T ss_pred -EEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCC
Confidence 33321 23456666665441 111 12221 111346799999 7777776543 24
Q ss_pred CEEEEecCCC---------eeEEEecccCCCCcceEEEEecCCCCcEEEEE-ecCCeEEEEEccccceeeeeceeecCCC
Q 019117 152 SVRLWNVQTG---------ICILIFAGAGGHRNEVLSVDFHPSDIYRIASC-GMDNTVKIWSMKEFWTYVEKSFTWTDLP 221 (346)
Q Consensus 152 ~i~iwd~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 221 (346)
.|.-.+.... ..+... +|. ....++|+| ++.++++- +.++.=.+--+.... .+.|....
T Consensus 175 ~IlRi~~dG~ip~~nPf~~~~i~a~----G~R-Np~Gla~dp-~G~L~~~d~g~~~~deln~i~~G~-----nyGwP~~~ 243 (347)
T 3das_A 175 KILRMTPDGEPAPGNPFPGSPVYSY----GHR-NVQGLAWDD-KQRLFASEFGQDTWDELNAIKPGD-----NYGWPEAE 243 (347)
T ss_dssp CEEEECTTSSBCTTCSSTTCCEEEB----CCS-BCCEEEECT-TCCEEEEECCSSSCEEEEEECTTC-----BCCTTTCC
T ss_pred EEEEEeCCCCccCCCCCCCCeEEee----CCC-CcceEEECC-CCCEEEEecCCCCCceeeEEcCCC-----EecCCccc
Confidence 4444444311 011111 343 345789998 67655543 223322222222211 11111111
Q ss_pred CCCCCccceeceEEEeecccceEEEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeec
Q 019117 222 SKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD 300 (346)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 300 (346)
..........++..+..+......+.|. +.++...-..+.|....+...... .+...-+....+.+..++..||
T Consensus 244 g~~~~~~~~~P~~~~~~~~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~~-----~~~e~~l~~~~gR~~dv~~~pD 318 (347)
T 3das_A 244 GKGGGSGFHDPVAQWSTDEASPSGIAYAEGSVWMAGLRGERLWRIPLKGTAAA-----ADPQAFLEGEYGRLRTVAPAGG 318 (347)
T ss_dssp SSCCCTTCCCCSEEECTTTCCEEEEEEETTEEEEEESTTCSEEEEEEETTEES-----SCCEEESTTTSSCEEEEEEEET
T ss_pred CCCCCccccCCcEecCCCCCCCcceEEEcCceeeccccCCEEEEEEecCCcee-----cceEEeecCCCCCccEEEECCC
Confidence 1111112233444444333456677776 555655555566666666543210 0011122334568999999999
Q ss_pred CCcceEEEEcCCC
Q 019117 301 FHYNAAAIGNREG 313 (346)
Q Consensus 301 ~~~~~l~~~~~dg 313 (346)
|. .++++...||
T Consensus 319 G~-lyv~td~~~g 330 (347)
T 3das_A 319 DK-LWLVTSNTDG 330 (347)
T ss_dssp TE-EEEEECTTSS
T ss_pred Cc-EEEEEcCCCC
Confidence 93 2344444444
No 339
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=92.96 E-value=0.52 Score=35.36 Aligned_cols=101 Identities=15% Similarity=0.043 Sum_probs=56.6
Q ss_pred EEEEcCCCCcEEEEeecCCeEEEEEccCccee------eee-c-cCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC
Q 019117 90 SWACNVDGIPFLVAGGINGIIRVIDVSNEKLH------KSF-V-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG 161 (346)
Q Consensus 90 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~-~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 161 (346)
.++++|+|. +.++ .+|.+.-.+..+.... ..+ . +... ..++.|.| ++.+.++ .||.|.-++..+.
T Consensus 45 ~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~-~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 45 FLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDP-NGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp EEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECT-TSCEEEE--ETTEEEEESCCCS
T ss_pred eEEECCCcc-EEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECC-CCCEEEe--CCCEEEEeCCCcC
Confidence 344559887 5555 6787666665442211 111 0 1112 47889998 7776666 4698887776432
Q ss_pred eeEEEeccc----CCCCcceEEEEecCCCCcEEEEEecCCeEE
Q 019117 162 ICILIFAGA----GGHRNEVLSVDFHPSDIYRIASCGMDNTVK 200 (346)
Q Consensus 162 ~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 200 (346)
....-+... ..-=..+..|.+.| ++.+.+.. |+.+.
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFY 157 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEE
T ss_pred CCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEE
Confidence 211111000 01124678999999 88866655 77743
No 340
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.27 E-value=8.2 Score=34.89 Aligned_cols=155 Identities=15% Similarity=0.105 Sum_probs=79.6
Q ss_pred CccEEEEEcCC-----cEEEEEeccCceeeeEe-eee-cCCCccceEEEEEEEcC-CCCcEEEEeecC------CeEEEE
Q 019117 48 YFNVFATVGGN-----RVTVYQCLEGGVIAALQ-SYV-DEDKEESFYTVSWACNV-DGIPFLVAGGIN------GIIRVI 113 (346)
Q Consensus 48 ~~~~la~~~~~-----~v~i~~~~~~~~~~~~~-~~~-~~~~~~~v~~~~~~~~~-~~~~~l~~~~~d------g~i~iw 113 (346)
++.+++.|+.+ .+.+||..++.-.. +. ... ...........+... . +++ +++.|+.+ ..+.+|
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~-~~~~~p~~~~p~~R~~hs~~~~-~~~~~-lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDM-KNIEVSSSEVPVARMCHTFTTI-SRNNQ-LLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEE-EECCCCCSCCCCCCBSCEEEEE-TTTTE-EEEECCBSSTTCBCCCCEEE
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEE-eccCCCCCCCCccccceEEEEE-ccCCE-EEEEcCCCCCCCccccEEEE
Confidence 45777777753 38899987765332 22 100 000111111111221 3 676 77777643 357888
Q ss_pred EccCcc--eeeeeccCCCceEEEEEeCCCCceEEEeeCCC--CEEEEecCCCeeEEEecc--cCCCCcceEEEEecCCCC
Q 019117 114 DVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKDE--SVRLWNVQTGICILIFAG--AGGHRNEVLSVDFHPSDI 187 (346)
Q Consensus 114 d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~ 187 (346)
|..+.+ .+..+......- +++... ++.+++.|+.++ .+.+||+.+.+-...-.. .........++.+...++
T Consensus 474 d~~t~~W~~~~~~p~~R~~h-~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~ 551 (695)
T 2zwa_A 474 DMKTREWSMIKSLSHTRFRH-SACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSK 551 (695)
T ss_dssp ETTTTEEEECCCCSBCCBSC-EEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTT
T ss_pred eCCCCcEEECCCCCCCcccc-eEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCC
Confidence 887754 222222222222 233323 567888887654 689999987653322110 001112223355554236
Q ss_pred cEEEEEec--C-----CeEEEEEcccc
Q 019117 188 YRIASCGM--D-----NTVKIWSMKEF 207 (346)
Q Consensus 188 ~~l~s~~~--d-----~~i~iwd~~~~ 207 (346)
.+++.|+. + ..+.+||+.+.
T Consensus 552 ~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 552 QGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp EEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred EEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 77777776 2 35888888874
No 341
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=91.18 E-value=5.1 Score=32.39 Aligned_cols=114 Identities=11% Similarity=0.068 Sum_probs=65.0
Q ss_pred cEEEEEcCCc-EEEEEeccCceeeeEeeeecCCCccceEEEEEEEcC-CCCcEEEEe-ecCCeEEEEEccCcceeeeecc
Q 019117 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV-DGIPFLVAG-GINGIIRVIDVSNEKLHKSFVG 126 (346)
Q Consensus 50 ~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~ 126 (346)
.+++.++.|+ |.-+|..+|+....+..- ...++....-...+ ++. .++.. ..||.|..++..+|.....+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~----~~~p~~~~~~~~~~~~~~-~~vv~p~~dG~l~a~~~~~G~~~~~~~~ 85 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE----NFQPLIEIQEPSRLETYE-TLIIEPFGDGNIYYFNAHQGLQKLPLSI 85 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG----GSCCSEECCCSCTTTSSE-EEEECCSTTTEEEEEETTTEEEEEEEEH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC----ccCCcEEecCCccccCCc-EEEEEECCCCEEEEEECCCCcEEeeecc
Confidence 3455555555 777787777766665431 00111110000001 233 44443 5799999999888855443321
Q ss_pred ----CCCceEEEEEeC--------CCCceEEEeeCCCCEEEEecCCCeeEEEecc
Q 019117 127 ----HGDSINEIRTQP--------LKPSLVVSASKDESVRLWNVQTGICILIFAG 169 (346)
Q Consensus 127 ----~~~~v~~~~~~~--------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 169 (346)
...++.. .=.| ..+..+++|+.+|.+...|+++|+.+..+..
T Consensus 86 ~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 86 RQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp HHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 1222221 0000 0356889999999999999999999999874
No 342
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=90.29 E-value=6.1 Score=31.78 Aligned_cols=118 Identities=13% Similarity=0.116 Sum_probs=72.9
Q ss_pred CccceEEEEEEEc-CCCCcEEEEeecCCeEEEEEccCcc-------eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCE
Q 019117 82 KEESFYTVSWACN-VDGIPFLVAGGINGIIRVIDVSNEK-------LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESV 153 (346)
Q Consensus 82 ~~~~v~~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 153 (346)
.++.|..+..... ++.. +++..+.+|.++--.+..-. ....++. .+.+..+.... ....++..+..|.+
T Consensus 93 ~~e~i~~~~~~~~~~~e~-~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~ 169 (327)
T 3uc1_A 93 PEERIAQVIQIRGYTDAP-YLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQS 169 (327)
T ss_dssp TTCCEEEEEEESSTTSSS-EEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEE
T ss_pred CCCEEEEEEEeccCCCCC-EEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeE
Confidence 3455554433311 1345 89999999999998875422 2223333 44555555555 45667777888988
Q ss_pred EEEecC--CC---------eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEcccc
Q 019117 154 RLWNVQ--TG---------ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF 207 (346)
Q Consensus 154 ~iwd~~--~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 207 (346)
..+... .- .....+ .....|.++...+ ....++..+..|.++.-.+...
T Consensus 170 ~rf~~~~~eip~~gr~a~Gv~~i~L----~~~d~Vv~~~~~~-~~~~ll~~T~~G~~Krt~l~e~ 229 (327)
T 3uc1_A 170 IRFSATDEALRPMGRATSGVQGMRF----NIDDRLLSLNVVR-EGTYLLVATSGGYAKRTAIEEY 229 (327)
T ss_dssp EEEECCTTTSCCCCTTSBCEESSCC----CTTCCEEEEEECC-TTCEEEEEETTSEEEEEEGGGS
T ss_pred EEEECcccccCcCCcCCCCeeeecC----CCCCEEEEEEEEC-CCCEEEEEeCCCcEEEEEHHHc
Confidence 877765 21 111122 2345677666654 5567888899999998887763
No 343
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.00 E-value=5.8 Score=31.08 Aligned_cols=226 Identities=14% Similarity=0.120 Sum_probs=114.7
Q ss_pred ceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCCCccceEEEEEEEcCCCCcEEEEeecCCeEEEEE
Q 019117 35 PLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVID 114 (346)
Q Consensus 35 ~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd 114 (346)
.|..|+... ...++.. ++.|..|-.....++.. .. .....|..++.. ... .++. . ||.|..|-
T Consensus 25 ~i~~ia~G~-----~h~~~l~-~G~v~~wG~n~~Gqlg~-p~----~~~~~i~~ia~G--~~h--s~~l-~-~G~v~~wG 87 (282)
T 3qhy_B 25 GVDAIAGGY-----FHGLALK-GGKVLGWGANLNGQLTM-PA----ATQSGVDAIAAG--NYH--SLAL-K-DGEVIAWG 87 (282)
T ss_dssp SCCEEEECS-----SEEEEEE-TTEEEEEECCSSSTTSC-CG----GGGSCCCEEEEC--SSE--EEEE-E-TTEEEEEE
T ss_pred CCcEEEeCC-----CeEEEEE-CCEEEEEeCCCCCCCCC-Cc----cCCCCEEEEEeC--CCE--EEEE-E-CCEEEEee
Confidence 466666543 2334443 44488887654333221 10 122344444442 222 3444 4 89999998
Q ss_pred ccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEe
Q 019117 115 VSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 194 (346)
Q Consensus 115 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 194 (346)
....-.+..-..-...|..|+... ...+.-. ||.|..|-......+-... .....|..++.-. ... ++ -.
T Consensus 88 ~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~---~~~~~i~~i~~G~-~~~-~~-l~ 157 (282)
T 3qhy_B 88 GNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA---EAQSGVTALDGGV-YTA-LA-VK 157 (282)
T ss_dssp CCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG---GGGSSEEEEEECS-SEE-EE-EE
T ss_pred CCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc---cCCCCeEEEEccc-CEE-EE-EE
Confidence 654222111111134677887754 3444445 8999999765432221111 1345677777653 322 33 33
Q ss_pred cCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCC
Q 019117 195 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSP 274 (346)
Q Consensus 195 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 274 (346)
||.|..|-........ .+. .-...|..++--..+.+.- .||.|..|-.....+..
T Consensus 158 -~G~v~~wG~n~~gqlg-------------------~p~----~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg 212 (282)
T 3qhy_B 158 -NGGVIAWGDNYFGQTT-------------------VPA----EAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTT 212 (282)
T ss_dssp -TTEEEEEECCTTSTTS-------------------CCG----GGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTC
T ss_pred -CCEEEEecCCCCCCCC-------------------Cce----ecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCC
Confidence 7999999766521100 000 0123455555544444444 69999999876543211
Q ss_pred CCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCCCCcc
Q 019117 275 GEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV 326 (346)
Q Consensus 275 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 326 (346)
. +... ...|..++..... .++.. ||.|+.|-.....++
T Consensus 213 ~-----p~~~----~~~v~~i~~G~~h---~~al~--~g~v~~wG~n~~gq~ 250 (282)
T 3qhy_B 213 V-----PTEA----LSGVSAIASGEWY---SLALK--NGKVIAWGSSRTAPS 250 (282)
T ss_dssp C-----CGGG----GSSCCEEEECSSC---EEEEE--TTEEEEESTTCCCCG
T ss_pred C-----Cccc----CCCceEEEcCCCE---EEEEE--CCEEEEecCCCCccc
Confidence 0 1111 1246666655443 33333 899999977665443
No 344
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=89.49 E-value=12 Score=35.27 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=27.9
Q ss_pred EEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeee
Q 019117 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF 124 (346)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 124 (346)
++....++.. ++++-+.|+++|+|++.+++++.+.
T Consensus 239 ~~~~~~~~~~-~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 239 ISMIFLSTYN-VLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp EEEEEETTTT-EEEEEETTCEEEEEETTTTEEEEEE
T ss_pred EEEeecCCCc-EEEEEECCCEEEEEECCCCCeEeee
Confidence 3444446666 9999999999999999999887664
No 345
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=89.37 E-value=6.6 Score=30.79 Aligned_cols=167 Identities=12% Similarity=0.056 Sum_probs=88.0
Q ss_pred CCeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCC
Q 019117 107 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD 186 (346)
Q Consensus 107 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 186 (346)
||.|..|-....-.+..-......|..|+... ...++. . ||.|..|-......+-.-. .-...|..++... .
T Consensus 41 ~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~---~~~~~v~~ia~G~-~ 112 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPA---EARSGVDAIAAGA-W 112 (282)
T ss_dssp TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCG---GGSSSEEEEEEET-T
T ss_pred CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCc---ccCCCeEEEECcC-C
Confidence 89999998654322211111234677777654 233333 4 8999999765432221111 1234688888763 3
Q ss_pred CcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEc
Q 019117 187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE 266 (346)
Q Consensus 187 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd 266 (346)
. .+.-. ||.|..|-....... ..+ ......|..++....+.+.-. ||.|..|-
T Consensus 113 h--s~al~-~G~v~~wG~n~~gql-------------------g~~----~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG 165 (282)
T 3qhy_B 113 A--SYALK-DGKVIAWGDDSDGQT-------------------TVP----AEAQSGVTALDGGVYTALAVK-NGGVIAWG 165 (282)
T ss_dssp E--EEEEE-TTEEEEEECCTTSTT-------------------SCC----GGGGSSEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred E--EEEEe-CCeEEEecCCCCCcC-------------------CCC----ccCCCCeEEEEcccCEEEEEE-CCEEEEec
Confidence 3 33334 899999976552110 000 001233555554433433334 89999998
Q ss_pred CCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEEEEcCC
Q 019117 267 PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (346)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~iwd~~~ 322 (346)
.....+... +.. ....|..++...+. .++. .||.|+.|-...
T Consensus 166 ~n~~gqlg~-----p~~----~~~~v~~i~~G~~h---s~al--~~G~v~~wG~n~ 207 (282)
T 3qhy_B 166 DNYFGQTTV-----PAE----AQSGVDDVAGGIFH---SLAL--KDGKVIAWGDNR 207 (282)
T ss_dssp CCTTSTTSC-----CGG----GGSSEEEEEECSSE---EEEE--ETTEEEEEECCT
T ss_pred CCCCCCCCC-----cee----cCCCeEEEEecCCE---EEEE--ECCeEEEEECCC
Confidence 765432110 000 12356666555443 3444 589999997654
No 346
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=87.82 E-value=10 Score=31.21 Aligned_cols=68 Identities=12% Similarity=0.046 Sum_probs=35.9
Q ss_pred CceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEeccc-CC-C--------CcceEEEEecCCCCcEEEEEecCC
Q 019117 129 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA-GG-H--------RNEVLSVDFHPSDIYRIASCGMDN 197 (346)
Q Consensus 129 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~-~--------~~~v~~~~~~~~~~~~l~s~~~d~ 197 (346)
..+.+|.+.|.+...++.+..++.|...+ ..++....+... .. + ...+.+++++|.+...++.+...+
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 35789999884455555555444444332 223333322210 00 0 134889999985456666666544
No 347
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=85.50 E-value=7 Score=36.84 Aligned_cols=76 Identities=12% Similarity=0.108 Sum_probs=47.0
Q ss_pred ceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecccCC--CCcceEEEEecCCCCcEEEEE---ecCCeEEEEEc
Q 019117 130 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGG--HRNEVLSVDFHPSDIYRIASC---GMDNTVKIWSM 204 (346)
Q Consensus 130 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~---~~d~~i~iwd~ 204 (346)
.+.++...+ +..++++-+.|+++|+|++.+++++........ ...........|..+.++.+- ..+|..++|.+
T Consensus 237 ~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~~~~~~~~~~~~~~~i~v~~s~~~~g~F~~~~~ 315 (950)
T 4gq2_M 237 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYYPDNSHGSFSIYKL 315 (950)
T ss_dssp CEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSCCCCCEEECSSSTTEEEEEECCSSSCEEEEEEE
T ss_pred eEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEeeecccccCCccccccccccCCCcccEEEEEEcCCCCcEEEEEEE
Confidence 466777777 778999999999999999999999887643110 111111222333233333322 34567777776
Q ss_pred cc
Q 019117 205 KE 206 (346)
Q Consensus 205 ~~ 206 (346)
..
T Consensus 316 ~~ 317 (950)
T 4gq2_M 316 NA 317 (950)
T ss_dssp EE
T ss_pred ec
Confidence 54
No 348
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=84.67 E-value=20 Score=31.38 Aligned_cols=262 Identities=12% Similarity=0.051 Sum_probs=133.0
Q ss_pred EEEEEcCCc-EEEEEeccCceeeeEeeeecCCC--------------------ccceEEEEEEEc---CCCCcEEEEee-
Q 019117 51 VFATVGGNR-VTVYQCLEGGVIAALQSYVDEDK--------------------EESFYTVSWACN---VDGIPFLVAGG- 105 (346)
Q Consensus 51 ~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~~~--------------------~~~v~~~~~~~~---~~~~~~l~~~~- 105 (346)
.|.+|+..+ |+|+-+-+++.++.+..|..... .+......+++. .||+ +|..-.
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGr-ylfiNdk 150 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGK-YLFINDK 150 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEE-EEEEEET
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeE-EEEEecC
Confidence 355666666 99999999998888877654321 111111223322 3566 565554
Q ss_pred cCCeEEEEEccCcceeeeecc-CCCceEEEEEe--CCCCceEEEeeC-------CCCEE---------E---EecCCCee
Q 019117 106 INGIIRVIDVSNEKLHKSFVG-HGDSINEIRTQ--PLKPSLVVSASK-------DESVR---------L---WNVQTGIC 163 (346)
Q Consensus 106 ~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~~l~s~~~-------d~~i~---------i---wd~~~~~~ 163 (346)
.+..|...+++.-++-+.+.- ....+..+.|- | +..+++.+++ ||... + .|..+.+.
T Consensus 151 an~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v 229 (638)
T 3sbq_A 151 ANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEM 229 (638)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSE
T ss_pred CCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEE
Confidence 567788888887765544432 45678888886 6 6667777664 23211 0 11111111
Q ss_pred EEEecccCCCCcceEEEEecCCCCcEEEEEecC---------------CeEEEEEccccceeeeeceeecCCCC-CCC--
Q 019117 164 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD---------------NTVKIWSMKEFWTYVEKSFTWTDLPS-KFP-- 225 (346)
Q Consensus 164 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---------------~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~-- 225 (346)
...+. -.+..-.+...+ ++.+.++.+.+ ..+.++++...+......... .... ..+
T Consensus 230 ~~Qv~----v~gnld~~~~~~-~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~-~~~g~gv~Vi 303 (638)
T 3sbq_A 230 AFQVI----VDGNLDNTDADY-TGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFI-TLGDSKTPVL 303 (638)
T ss_dssp EEEEE----ESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCB-CCTTCCCCEE
T ss_pred EEEEE----cCCChhhcCCCC-CCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeE-EECCCCeeEE
Confidence 11111 011222334455 45555554332 257777776633322111000 0000 000
Q ss_pred -Ccc--c-eeceEEEeecccceEEEEec--CCEEEEEee-cCeEEEEcCCCCCCCC---C-CccccccccccCCCcCeeE
Q 019117 226 -TKY--V-QFPVFIASVHSNYVDCNRWL--GDFILSKSV-DNEIVLWEPKMKEQSP---G-EGTADILQKYPVPECDIWF 294 (346)
Q Consensus 226 -~~~--~-~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-d~~i~iwd~~~~~~~~---~-~~~~~~~~~~~~~~~~v~~ 294 (346)
.+. . ...+..+-.-+.....+..+ |+++++++. +.++.++|+....... . ........... -......
T Consensus 304 D~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlH 382 (638)
T 3sbq_A 304 DGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLH 382 (638)
T ss_dssp ECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEE
T ss_pred ccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccE
Confidence 000 0 01111122223333445555 777766654 8899999988532100 0 00011111222 2345677
Q ss_pred EEEeecCCcceEEEEcCCCcEEEEEcCCC
Q 019117 295 IKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (346)
Q Consensus 295 ~~~s~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (346)
.+|.++| ....+.--|..|.-|++...
T Consensus 383 t~Fd~~G--~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 383 TTFDGRG--NAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp EEECSSS--EEEEEETTTTEEEEEEHHHH
T ss_pred EEECCCC--ceEeeeeecceEEEEeccHH
Confidence 8899988 56777789999999999763
No 349
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=80.79 E-value=25 Score=29.79 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=39.2
Q ss_pred CCceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeE--EEecccC---CCCcceEEEEecCC---CCcEEEEEe
Q 019117 128 GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI--LIFAGAG---GHRNEVLSVDFHPS---DIYRIASCG 194 (346)
Q Consensus 128 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~---~~~~~v~~~~~~~~---~~~~l~s~~ 194 (346)
-.....++|.| ++.++++-...+.|.+++..+++.. ..+.... .....+..|+|+|+ ++.+.++-+
T Consensus 26 l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s 99 (454)
T 1cru_A 26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT 99 (454)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence 34567999999 7776666443346888876555432 2222110 12456789999984 445444443
No 350
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=78.88 E-value=29 Score=29.39 Aligned_cols=108 Identities=10% Similarity=0.118 Sum_probs=58.0
Q ss_pred CCceEEEEEEeecCCCccEEEEEcCCc-EEEEEeccCceeeeEeeeecC----CCccceEEEEEEEcCC---CCcEEEEe
Q 019117 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDE----DKEESFYTVSWACNVD---GIPFLVAG 104 (346)
Q Consensus 33 ~~~v~~~~~~p~~~~~~~~la~~~~~~-v~i~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~---~~~~l~~~ 104 (346)
-...+.|+|.| +|+++++-..++ |++++..++.. ..+..+... ........+++. |+ +. .|...
T Consensus 26 l~~P~~~a~~p----dG~l~V~e~~gg~I~~~~~~~g~~-~~~~~~~~~~~~~~g~~Gllgia~~--Pdf~~~g-~lYv~ 97 (454)
T 1cru_A 26 LNKPHALLWGP----DNQIWLTERATGKILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFH--PDFKNNP-YIYIS 97 (454)
T ss_dssp CSSEEEEEECT----TSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEEC--TTTTTSC-EEEEE
T ss_pred CCCceEEEEcC----CCcEEEEEcCCCEEEEEECCCCcE-eEEecCCccccccCCCCceeEEEEC--CCcCcCC-EEEEE
Confidence 34567999999 788888887765 87777544432 223222111 123455556655 74 33 34433
Q ss_pred e-c------------CCeEEEEEccCc-------ceee-eecc-CCCceEEEEEeCCCCceEEEeeC
Q 019117 105 G-I------------NGIIRVIDVSNE-------KLHK-SFVG-HGDSINEIRTQPLKPSLVVSASK 149 (346)
Q Consensus 105 ~-~------------dg~i~iwd~~~~-------~~~~-~~~~-~~~~v~~~~~~~~~~~~l~s~~~ 149 (346)
. . ...|.-++.... +.+. .+.. .......|+|.| ++.++++.+.
T Consensus 98 ~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd 163 (454)
T 1cru_A 98 GTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGD 163 (454)
T ss_dssp EEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECC
T ss_pred EeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECC
Confidence 3 2 234555655322 1111 1221 122468999999 7777666543
No 351
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=78.18 E-value=22 Score=27.68 Aligned_cols=196 Identities=12% Similarity=-0.011 Sum_probs=104.1
Q ss_pred EEEEeecCCeEEEEE---ccCcceeeeeccCCCceEEEEEeCC-CCceEEEeeCCCCEEEEecCCCe------eEEEecc
Q 019117 100 FLVAGGINGIIRVID---VSNEKLHKSFVGHGDSINEIRTQPL-KPSLVVSASKDESVRLWNVQTGI------CILIFAG 169 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd---~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~------~~~~~~~ 169 (346)
+|+..+++|.++--. +........+. ....|..+.. ++ +...++..+.+|.++...+..-. ....++
T Consensus 37 ~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk- 113 (276)
T 3no0_A 37 GLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT- 113 (276)
T ss_dssp CEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-
T ss_pred EEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-
Confidence 566666678766433 32221111133 3455666643 32 35688899999999998875432 222222
Q ss_pred cCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEEeecccceEEEE-e
Q 019117 170 AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR-W 248 (346)
Q Consensus 170 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~ 248 (346)
....+..+.... +...++..+..|.+..++.......-.. ..+.....+.. .+.|..+. .
T Consensus 114 ---egD~l~~~~~~~-~~~~ill~T~~G~~~r~~~~eip~~gR~--------------a~Gv~~i~L~~-~d~vv~~~~~ 174 (276)
T 3no0_A 114 ---EGDEVVSIASSV-DETHILLFTKKGRVARFSVREVPPSTPG--------------ARGVQGIKLEK-NDETSGLRIW 174 (276)
T ss_dssp ---TTCCEEEEEECC-SSCEEEEEETTSEEEEEEGGGSCBCCTT--------------CCCEECCCCCT-TCCEEEEEEE
T ss_pred ---CCCEEEEEEEeC-CCCEEEEEECCCEEEEEEhhhCCCcCCC--------------CCCEEEEccCC-CCEEEEEEEe
Confidence 334565555554 5567888888999888887663211000 00111112222 23343333 3
Q ss_pred c-CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCcEEE--EEcCC
Q 019117 249 L-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV--WELQS 322 (346)
Q Consensus 249 ~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~i--wd~~~ 322 (346)
. +..++..+..|.++...+............ +..+ ...+.+..+....+. ..++..+.+|.+.. ++...
T Consensus 175 ~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkG--v~~i-~~~~~lv~~~~~~~~--~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 175 NGEPYLLVITAKGRVKKISHEEIPKTNRGVKG--TEVS-GTKDTLVDLIPIKEE--VELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp SSCSEEEEEETTSCEEEEEGGGSCCCCTTCCC--EECC-CSSSCEEEEEEESSE--EEEEEEETTSCEEEEEEEGGG
T ss_pred CCCCEEEEEeCCCcEEEeEHHHcccCCCCCcc--eEEE-cCCCcEEEEEEeCCC--CEEEEEcCCCeEEEeeeCHHH
Confidence 3 568899999999999887655432211111 1111 123345444333322 35666677788877 77654
No 352
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=78.06 E-value=7.4 Score=33.89 Aligned_cols=72 Identities=11% Similarity=0.056 Sum_probs=50.5
Q ss_pred CceEEEEEeCCCCceE-EEeeCCCCEEEEecCCC------ee-------EEEecccCCCCcceEEEEecCCCCcEEEEEe
Q 019117 129 DSINEIRTQPLKPSLV-VSASKDESVRLWNVQTG------IC-------ILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 194 (346)
Q Consensus 129 ~~v~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~------~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 194 (346)
.....+.++| ++.++ ++|-.+.++.++|++.- +. ..... -.-.....+|.+ ++....|-.
T Consensus 323 ksPHGv~vsP-DGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e----~GlGPlHt~Fd~-~G~aYTtlf 396 (638)
T 3sbq_A 323 KNPHGCNTSS-DGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE----LGLGPLHTTFDG-RGNAYTTLF 396 (638)
T ss_dssp SSCCCEEECT-TSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB----CCSCEEEEEECS-SSEEEEEET
T ss_pred CCCcceeeCC-CCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc----CCCcccEEEECC-CCceEeeee
Confidence 4456888999 55555 45556889999998731 11 11221 344667899998 776666667
Q ss_pred cCCeEEEEEccc
Q 019117 195 MDNTVKIWSMKE 206 (346)
Q Consensus 195 ~d~~i~iwd~~~ 206 (346)
.|..|.-|++..
T Consensus 397 idSqvvkWni~~ 408 (638)
T 3sbq_A 397 IDSQVVKWNMEE 408 (638)
T ss_dssp TTTEEEEEEHHH
T ss_pred ecceEEEEeccH
Confidence 899999999987
No 353
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.04 E-value=9.5 Score=36.81 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=25.3
Q ss_pred CCCCcEEEEeecCCeEEEEEccCcceeeee
Q 019117 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSF 124 (346)
Q Consensus 95 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 124 (346)
++.. ++++-+.|+++|||++.+++++.+.
T Consensus 247 ~~~~-~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 247 STYN-VLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp TTTT-EEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred CCcc-EEEEEeCCCEEEEEECCCCCeEEee
Confidence 5666 9999999999999999999887764
No 354
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=78.01 E-value=26 Score=28.41 Aligned_cols=104 Identities=13% Similarity=0.061 Sum_probs=59.1
Q ss_pred eEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcce--eeee----ccCCCceEEEEEeCC---CCceEEEe--eCCCCEE
Q 019117 86 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL--HKSF----VGHGDSINEIRTQPL---KPSLVVSA--SKDESVR 154 (346)
Q Consensus 86 v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~----~~~~~~v~~~~~~~~---~~~~l~s~--~~d~~i~ 154 (346)
.+.+++. |+|. ++++-...|.|++++..+++. +..+ .........|+++|+ ++.+.++- ..+..|.
T Consensus 34 P~~ia~~--pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 34 PWGLAPL--PGGD-LLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp EEEEEEC--TTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred ceEEEEc--CCCc-EEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 3445555 9998 766665589999998665543 2222 123456789999983 23333331 2345566
Q ss_pred EEecCCC----------eeEE-EecccCCCCcceEEEEecCCCCcEEEEEec
Q 019117 155 LWNVQTG----------ICIL-IFAGAGGHRNEVLSVDFHPSDIYRIASCGM 195 (346)
Q Consensus 155 iwd~~~~----------~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 195 (346)
-|.+..+ +.+. .+.....| .-..|+|.| ++.++++.+.
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H--~g~~l~fgp-DG~Lyvt~Gd 159 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIH--NGGRIAFGP-DKMLYAGTGE 159 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSC--CCCCEEECT-TSCEEEECBC
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCc--cCccccCCC-CCCEEEEECC
Confidence 6665541 1111 12211123 345799999 7887777653
No 355
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=70.95 E-value=65 Score=29.66 Aligned_cols=157 Identities=8% Similarity=0.036 Sum_probs=75.4
Q ss_pred CCceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCC--CccceEEEEEEEcCCCCcEEEEeecCCe-
Q 019117 33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDED--KEESFYTVSWACNVDGIPFLVAGGINGI- 109 (346)
Q Consensus 33 ~~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~~~dg~- 109 (346)
...|.+|+++|.++ +.++|.+...+|...+ ..++....+....... ....+..+++. |.....++.+..+..
T Consensus 14 ~g~i~~i~~~p~~~--~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~d--p~~~~~i~~~~g~~~~ 88 (789)
T 1sqj_A 14 GGYITGIVAHPKTK--DLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALD--PNNPDRLYLAQGRYVG 88 (789)
T ss_dssp CSCEEEEEECSSST--TCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEE--TTEEEEEEEEECSCTT
T ss_pred CCcEEEEEECCCCC--CEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEEC--CCCCCEEEEEeCccCC
Confidence 45899999999543 3455554444454443 3444444433211000 12357777766 533223444432211
Q ss_pred ---EEEEE-ccCcceeeeecc---------CCCceEEEEEeCCCCceEEEeeCCCCEEEEecC-CCeeEEEecccC---C
Q 019117 110 ---IRVID-VSNEKLHKSFVG---------HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-TGICILIFAGAG---G 172 (346)
Q Consensus 110 ---i~iwd-~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~---~ 172 (346)
-.||. .+.++.-..+.. ....+..+++.|.+.+.++.+...+.| |... .|+.-..+.... .
T Consensus 89 ~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~~~~~~~~~ 166 (789)
T 1sqj_A 89 DEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPDAFT 166 (789)
T ss_dssp SSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEETTSCCCCS
T ss_pred CcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCCccCccccC
Confidence 23333 233332222211 011356788888556677777644443 3332 334333332110 1
Q ss_pred CCcceEEEEecCCCCcEEEEEecC
Q 019117 173 HRNEVLSVDFHPSDIYRIASCGMD 196 (346)
Q Consensus 173 ~~~~v~~~~~~~~~~~~l~s~~~d 196 (346)
....+..+.++|.+...++.+..+
T Consensus 167 ~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 167 NGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp TTTCEEEEEECTTSTTCEEEEESS
T ss_pred CCCCeEEEEECCCCCCEEEEEEcC
Confidence 124578899988555556666544
No 356
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=69.54 E-value=11 Score=33.90 Aligned_cols=31 Identities=6% Similarity=0.392 Sum_probs=27.3
Q ss_pred cceEEEEecCCEEEEEeecCeEEEEcCCCCC
Q 019117 241 NYVDCNRWLGDFILSKSVDNEIVLWEPKMKE 271 (346)
Q Consensus 241 ~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 271 (346)
..|.++.+...++++-+.|.++|+|++.+++
T Consensus 222 ~~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~ 252 (729)
T 3f7f_A 222 SVISCKLFHERYLIVLTQNCHLKIWDLTSFT 252 (729)
T ss_dssp CEEEEEEETTTEEEEEETTCEEEEEETTTTE
T ss_pred ceEEEeccCCcEEEEEEcCCeEEEEEcCCCc
Confidence 4577777778899999999999999999986
No 357
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=67.17 E-value=11 Score=34.03 Aligned_cols=37 Identities=8% Similarity=0.169 Sum_probs=29.8
Q ss_pred ceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEecc
Q 019117 130 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG 169 (346)
Q Consensus 130 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 169 (346)
.|.++.+ +..++++-+.|+++|+|++++++++.....
T Consensus 223 ~Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE---TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc---CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555544 467999999999999999999998887763
No 358
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=66.04 E-value=5.9 Score=38.21 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=31.1
Q ss_pred ceEEEEEeCCCCceEEEeeCCCCEEEEecCCCeeEEEec
Q 019117 130 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA 168 (346)
Q Consensus 130 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 168 (346)
.+.+++..+ +..++++-+.|+++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~-~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEET-TTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccC-CccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 344555666 67899999999999999999999988765
No 359
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=55.92 E-value=94 Score=26.38 Aligned_cols=103 Identities=17% Similarity=0.103 Sum_probs=54.5
Q ss_pred EEEcCCCCcEEEEeecCCeEEEEEccCcc---eeeeecc---------CCCceEEEEEeCC---CCceEEEeeC--C---
Q 019117 91 WACNVDGIPFLVAGGINGIIRVIDVSNEK---LHKSFVG---------HGDSINEIRTQPL---KPSLVVSASK--D--- 150 (346)
Q Consensus 91 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~---------~~~~v~~~~~~~~---~~~~l~s~~~--d--- 150 (346)
+++.|+|...|+++...|.|++++..... .+..+.. .......|+|+|+ ++.+.++-+. +
T Consensus 19 ~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~~~~ 98 (463)
T 2wg3_C 19 ALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQERWA 98 (463)
T ss_dssp EECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCCSSC
T ss_pred EEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCCCcc
Confidence 34448874235556678999999754321 2222211 1356789999993 2334433222 1
Q ss_pred -------CCEEEEecCC----------CeeEEEecc-cCCCCcceEEEEecCCCCcEEEEEecC
Q 019117 151 -------ESVRLWNVQT----------GICILIFAG-AGGHRNEVLSVDFHPSDIYRIASCGMD 196 (346)
Q Consensus 151 -------~~i~iwd~~~----------~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d 196 (346)
..|.-|.+.. .+.+..+.. ...| .-..|+|.| ++.++++.+..
T Consensus 99 ~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H--~g~~l~fgp-DG~LYv~~Gd~ 159 (463)
T 2wg3_C 99 IGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKH--LGGQLLFGP-DGFLYIILGDG 159 (463)
T ss_dssp SSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSS--CEEEEEECT-TSCEEEEECCT
T ss_pred cCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcc--cCCcEeECC-CCcEEEEeCCC
Confidence 1344455532 123333321 1123 457899999 88877776653
No 360
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=53.38 E-value=86 Score=25.12 Aligned_cols=200 Identities=7% Similarity=-0.030 Sum_probs=104.7
Q ss_pred EEEEeecCCeEEEEEc---cC------cceeee---eccCCCceEEEEEeCC--CCceEEEeeCCCCEEEEecCCCe---
Q 019117 100 FLVAGGINGIIRVIDV---SN------EKLHKS---FVGHGDSINEIRTQPL--KPSLVVSASKDESVRLWNVQTGI--- 162 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~---~~------~~~~~~---~~~~~~~v~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~--- 162 (346)
.|+.-+..|.+.-... .. |.++.. +. ....|..+...+. +...++..+.+|.++.-.+....
T Consensus 55 ~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~ 133 (327)
T 3uc1_A 55 LILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNR 133 (327)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCC
T ss_pred EEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccc
Confidence 5666666787665543 21 222211 22 2345555544331 36789999999999988765422
Q ss_pred ----eEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEcc--ccceeeeeceeecCCCCCCCCccceeceEEE
Q 019117 163 ----CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK--EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 236 (346)
Q Consensus 163 ----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (346)
....++ ....+..+.... ....++..+..|.+..+... ....... ...+.....+
T Consensus 134 r~G~~~i~lk----e~D~lv~~~~~~-~~d~ill~T~~G~~~rf~~~~~eip~~gr--------------~a~Gv~~i~L 194 (327)
T 3uc1_A 134 SGGIVAVNLR----DNDELVGAVLCS-AGDDLLLVSANGQSIRFSATDEALRPMGR--------------ATSGVQGMRF 194 (327)
T ss_dssp SSCEESCBCC----TTCCEEEEEEEC-TTCEEEEEETTSEEEEEECCTTTSCCCCT--------------TSBCEESSCC
T ss_pred cCceEEEEEC----CCCEEEEEEEec-CCCEEEEEECCCeEEEEECcccccCcCCc--------------CCCCeeeecC
Confidence 112222 234555555544 55667778888998888877 4211000 0001111122
Q ss_pred eecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCc
Q 019117 237 SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK 314 (346)
Q Consensus 237 ~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~ 314 (346)
. ..+.|.++... +..++..+..|.++.-.+.................+....+.+..+....+. ..++..+.+|.
T Consensus 195 ~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~--~~i~l~T~~G~ 271 (327)
T 3uc1_A 195 N-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDD--SELYAVTSGGG 271 (327)
T ss_dssp C-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTT--CEEEEEEGGGC
T ss_pred C-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCC--ccEEEEcCCCe
Confidence 2 22334444333 5689999999999998876544321111111112222223345554444333 34556667777
Q ss_pred EEEEEcCC
Q 019117 315 IFVWELQS 322 (346)
Q Consensus 315 i~iwd~~~ 322 (346)
+.-++...
T Consensus 272 ~ir~~~~~ 279 (327)
T 3uc1_A 272 VIRTAARQ 279 (327)
T ss_dssp EEEEEGGG
T ss_pred EEEEehhh
Confidence 77777654
No 361
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=52.86 E-value=96 Score=25.53 Aligned_cols=144 Identities=10% Similarity=0.150 Sum_probs=80.5
Q ss_pred EEEEEeccC--ceeeeEeeeecC-CCccceEEEEEEE-cCC----CCcEEEEee-cCCeEEEEEccCcceeeeecc----
Q 019117 60 VTVYQCLEG--GVIAALQSYVDE-DKEESFYTVSWAC-NVD----GIPFLVAGG-INGIIRVIDVSNEKLHKSFVG---- 126 (346)
Q Consensus 60 v~i~~~~~~--~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~----~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~---- 126 (346)
|.+||+.++ +.++.+.-.... .....+..+.+.. .++ +. ++..+. ..+.|.|+|+.+++.-+.+..
T Consensus 125 Lv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~-~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 125 IVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSET-FVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSE-EEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred EEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCcc-EEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 899999999 777766532111 1234566677662 232 23 444443 467899999998875544311
Q ss_pred ----------C----CCceEEEEEeCCC---CceEEEeeCCCCEEEEecC-----CC---eeEEEecccCCCCcceEEEE
Q 019117 127 ----------H----GDSINEIRTQPLK---PSLVVSASKDESVRLWNVQ-----TG---ICILIFAGAGGHRNEVLSVD 181 (346)
Q Consensus 127 ----------~----~~~v~~~~~~~~~---~~~l~s~~~d~~i~iwd~~-----~~---~~~~~~~~~~~~~~~v~~~~ 181 (346)
. ...+..|+.+|.. ++.|.-..-.+ -++|.+. +. ..++.+... +....-..++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~k-g~~s~~~~~~ 281 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNR-GKYNDAIALA 281 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEEC-CTTCCEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeec-CCCCCcceEE
Confidence 0 2367788888831 44454444333 2333332 11 112222110 1113334566
Q ss_pred ecCCCCcEEEEEecCCeEEEEEccc
Q 019117 182 FHPSDIYRIASCGMDNTVKIWSMKE 206 (346)
Q Consensus 182 ~~~~~~~~l~s~~~d~~i~iwd~~~ 206 (346)
+++.++.++++--....|..|+...
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCC
Confidence 7533778788888888999999865
No 362
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=51.83 E-value=82 Score=24.45 Aligned_cols=156 Identities=17% Similarity=0.184 Sum_probs=89.5
Q ss_pred CCceEEEEEEeecCCCccEEEEEcCCcE---EEEEeccCceeeeEeeeecCCCccceEEEEEEEcC-CCCcEEEEeecCC
Q 019117 33 KRPLYAVVFNFIDSRYFNVFATVGGNRV---TVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV-DGIPFLVAGGING 108 (346)
Q Consensus 33 ~~~v~~~~~~p~~~~~~~~la~~~~~~v---~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~l~~~~~dg 108 (346)
.+.+..+.-..+ ...+++..+.+.+ .+|++....... + -..++.|..+-. .. +.. +++..+.+|
T Consensus 23 gD~~~~~~~~~t---~~~ll~fT~~G~v~~~~~~~lp~~~~~~----l--l~~~e~i~~v~~--~~~~~~-~~v~~T~~G 90 (276)
T 3no0_A 23 KAPVVNILRVPF---TEGLFLVSNRGRVYWIAGSQALQGSKVS----L--KSREEKIVGAFI--REKFGN-RLLLATKKG 90 (276)
T ss_dssp CCCEEEEEEEET---TSCEEEEETTSEEEEECSHHHHTSEECC----C--SSTTCCEEEEEE--GGGSCS-EEEEEETTS
T ss_pred CCeEEEEEEECC---CCEEEEEcCCCeEEEEEhhhCccCcccc----c--CCCCCEEEEEEC--CcCCCC-EEEEEeCCC
Confidence 345655554441 3356666666653 334443322211 1 124555654422 22 345 899999999
Q ss_pred eEEEEEccCcc------eeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecCC---------CeeEEEecccCCC
Q 019117 109 IIRVIDVSNEK------LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT---------GICILIFAGAGGH 173 (346)
Q Consensus 109 ~i~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~~ 173 (346)
.++-..+..-. ....++ ..+.+..+.... +...++..+..|.+..+.... |.....+. .
T Consensus 91 ~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~-~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~----~ 164 (276)
T 3no0_A 91 YVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSV-DETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE----K 164 (276)
T ss_dssp EEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECC-SSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC----T
T ss_pred EEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeC-CCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC----C
Confidence 99999875432 122233 234566665555 556777788889888776532 22222222 3
Q ss_pred CcceEEEEecCCCCcEEEEEecCCeEEEEEcccc
Q 019117 174 RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF 207 (346)
Q Consensus 174 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 207 (346)
...|..+...+ ++..++..+..|.++...+...
T Consensus 165 ~d~vv~~~~~~-~~~~ll~~T~~G~~kr~~~~e~ 197 (276)
T 3no0_A 165 NDETSGLRIWN-GEPYLLVITAKGRVKKISHEEI 197 (276)
T ss_dssp TCCEEEEEEES-SCSEEEEEETTSCEEEEEGGGS
T ss_pred CCEEEEEEEeC-CCCEEEEEeCCCcEEEeEHHHc
Confidence 35666665554 5567888889999999888763
No 363
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=51.46 E-value=89 Score=24.77 Aligned_cols=203 Identities=9% Similarity=0.022 Sum_probs=0.0
Q ss_pred CCCCcEEEEeecCCeEEEEEccCc--------ceeeeeccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecC-------
Q 019117 95 VDGIPFLVAGGINGIIRVIDVSNE--------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ------- 159 (346)
Q Consensus 95 ~~~~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~------- 159 (346)
++.. ++++.+.+|.|+--.+..- -....--...+.+..+.... ....++..+..|.++-....
T Consensus 6 ~~e~-~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKEN-IVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp --CE-EEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred CCCC-EEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEEC-CCCEEEEEECCCeEEEEEHHHCCCCCc
Q ss_pred --CCee---EEEecccCCCCcceEEEEecCC--CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceec
Q 019117 160 --TGIC---ILIFAGAGGHRNEVLSVDFHPS--DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP 232 (346)
Q Consensus 160 --~~~~---~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (346)
.|.+ ...+. ....|.++...++ ....++..+..|.++.-.+..+...... +..
T Consensus 84 ~~~G~~i~~~l~l~----~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~----------------G~~ 143 (312)
T 1suu_A 84 ASKGQNISELINLG----DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSR----------------GVI 143 (312)
T ss_dssp ----CBGGGTSCCC----TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC--------------------CEE
T ss_pred cCCCcChhhccCCC----CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCC----------------cEE
Q ss_pred eEEEeecccceEEEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcC
Q 019117 233 VFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR 311 (346)
Q Consensus 233 ~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~ 311 (346)
...+.....-+...... .+.++..+.+|.+..+....-..............+.. ...|..+....++ ..+++.+.
T Consensus 144 ~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~--~~l~~vt~ 220 (312)
T 1suu_A 144 VIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKEN--PYLLIVSE 220 (312)
T ss_dssp CBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTC--SEEEEEET
T ss_pred EEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCC--CeEEEEEC
Q ss_pred CCcEEEEEcCC
Q 019117 312 EGKIFVWELQS 322 (346)
Q Consensus 312 dg~i~iwd~~~ 322 (346)
.|..+..++..
T Consensus 221 ~G~~kr~~~~e 231 (312)
T 1suu_A 221 NGYGKRLNMSK 231 (312)
T ss_dssp TSEEEEEEGGG
T ss_pred CCceEEEEHHH
No 364
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=48.14 E-value=46 Score=29.17 Aligned_cols=55 Identities=5% Similarity=-0.064 Sum_probs=35.3
Q ss_pred cCeeEEEEeecCCcceEE-EEcC-----------CCcEEEEEcCCCCcceeeeee--eeEEEEEecCCCCC
Q 019117 290 CDIWFIKFSCDFHYNAAA-IGNR-----------EGKIFVWELQSSPPVLIARLI--CFSLHVKYNPQSVY 346 (346)
Q Consensus 290 ~~v~~~~~s~~~~~~~l~-~~~~-----------dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~spdg~~ 346 (346)
.....|.|.++| .+.+ +=.. .+.+..++..+++........ ..++.++||||+++
T Consensus 476 nsPDnL~fd~~G--~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~kt 544 (592)
T 4a9v_A 476 NSPDGLGFDKAG--RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKT 544 (592)
T ss_dssp CCEEEEEECTTC--CEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSE
T ss_pred CCCCceEECCCC--CEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCE
Confidence 356678999998 4444 3221 225777777777755444322 35789999999873
No 365
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=47.64 E-value=1.6e+02 Score=26.71 Aligned_cols=113 Identities=7% Similarity=0.040 Sum_probs=53.7
Q ss_pred CceEEEEEEeecCCCccEEEEEcCCcEEEEEeccCceeeeEeeeecCC--CccceEEEEEEEcCCCCcEEEEeec-C---
Q 019117 34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDED--KEESFYTVSWACNVDGIPFLVAGGI-N--- 107 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~~la~~~~~~v~i~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~~~-d--- 107 (346)
..|..|+++|.++ +.++|....++|...+ ..++....+....... ....+..+++.+...+. +++..+. .
T Consensus 23 g~i~~i~~~p~~~--~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~-v~v~~~~~~~~~ 98 (737)
T 2cn3_A 23 GFMPGIVFNETEK--DLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNR-VYIVAGMYTNDW 98 (737)
T ss_dssp SCCCEEEECSSST--TCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTC-EEEEECSCSSSS
T ss_pred ceeeEEEECCCCC--CEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCE-EEEEeccccccc
Confidence 3899999999543 3455544344554444 3344444432211000 12357667666322233 3433321 1
Q ss_pred --CeEEEEEcc-Ccceeeeec-cC--------CCceEEEEEeCCCCceEEEeeCC
Q 019117 108 --GIIRVIDVS-NEKLHKSFV-GH--------GDSINEIRTQPLKPSLVVSASKD 150 (346)
Q Consensus 108 --g~i~iwd~~-~~~~~~~~~-~~--------~~~v~~~~~~~~~~~~l~s~~~d 150 (346)
+...||.-. .++.-..+. .. ...+..|+++|.+...++.+...
T Consensus 99 ~~~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 99 LPNMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp SCCCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred ccCCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 123455433 333211111 01 01246799999667777777643
No 366
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=47.32 E-value=94 Score=27.44 Aligned_cols=59 Identities=17% Similarity=0.142 Sum_probs=37.7
Q ss_pred eEEEEEeCCCCceEEEeeCC------------CCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEE
Q 019117 131 INEIRTQPLKPSLVVSASKD------------ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC 193 (346)
Q Consensus 131 v~~~~~~~~~~~~l~s~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 193 (346)
.-.|+|+| .+.+++.-..+ ..+.+.+..+++..+-+.. ....+++.++|+| +++.|+..
T Consensus 478 PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~--P~gaE~TG~~fsp-Dg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG--PIGCEVTGISFSP-DQKTLFVG 548 (592)
T ss_dssp EEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC--CTTCEEEEEEECT-TSSEEEEE
T ss_pred CcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC--CCCccCcCeeECC-CCCEEEEE
Confidence 46789999 67665554322 2345556666776655552 2457899999999 66555544
No 367
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=43.33 E-value=1.6e+02 Score=25.95 Aligned_cols=60 Identities=17% Similarity=0.138 Sum_probs=38.0
Q ss_pred ceEEEEEeCCCCceEEEeeC------------CCCEEEEecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEE
Q 019117 130 SINEIRTQPLKPSLVVSASK------------DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC 193 (346)
Q Consensus 130 ~v~~~~~~~~~~~~l~s~~~------------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 193 (346)
....|.|.+ ++.+.+.... ...|..++..+++....+.. .....++.++|+| +++.|+.+
T Consensus 477 sPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~--P~~aEpnGiafSP-D~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG--PIGCEVTGISFSP-DQKTLFVG 548 (592)
T ss_dssp CEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEEC--CTTCEEEEEEECT-TSSEEEEE
T ss_pred CCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeC--CCCccccCCEECC-CCCEEEEE
Confidence 456899998 6666663221 11466667767776555541 1346799999999 66655554
No 368
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=42.86 E-value=1.4e+02 Score=24.56 Aligned_cols=145 Identities=6% Similarity=0.030 Sum_probs=78.1
Q ss_pred eEEEEEccCc--ceeeeecc------CCCceEEEEEe---CC---CCceEE-EeeCCCCEEEEecCCCeeEEEecccC--
Q 019117 109 IIRVIDVSNE--KLHKSFVG------HGDSINEIRTQ---PL---KPSLVV-SASKDESVRLWNVQTGICILIFAGAG-- 171 (346)
Q Consensus 109 ~i~iwd~~~~--~~~~~~~~------~~~~v~~~~~~---~~---~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~-- 171 (346)
+|.+||+.+. +.++.+.- ....+..+++. |. +..++. +=+..+.|.|+|+.+++..+.+....
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 6889999999 88876642 23467888887 21 133333 33356789999999887766553110
Q ss_pred ---------CC----CcceEEEEecCC---CCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEE
Q 019117 172 ---------GH----RNEVLSVDFHPS---DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 235 (346)
Q Consensus 172 ---------~~----~~~v~~~~~~~~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (346)
+. ...+..|+++|. +++.|+-....+ -++|.+.+.... ... ....+..
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~--------~~~-------~~~~v~~ 267 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELK--------QKG-------GKLNPEL 267 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHS--------STT-------CCCCCEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhh--------Ccc-------hhhceEE
Confidence 00 135777888873 044444443332 233444331000 000 0111111
Q ss_pred Eeecc--cceEEEEec---CCEEEEEeecCeEEEEcCCC
Q 019117 236 ASVHS--NYVDCNRWL---GDFILSKSVDNEIVLWEPKM 269 (346)
Q Consensus 236 ~~~~~--~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~ 269 (346)
+.... ..-..++++ |.++++--..+.|..|+..+
T Consensus 268 ~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 268 LGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred eeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 21111 122233442 66777777889999999875
No 369
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=42.83 E-value=1.4e+02 Score=24.46 Aligned_cols=199 Identities=10% Similarity=0.062 Sum_probs=99.4
Q ss_pred EEEEeecCCeEEEEEccCc-c----------eeeeecc-CCCceEEEEEeCCCCceEEEeeCCCCEEEEecCCC------
Q 019117 100 FLVAGGINGIIRVIDVSNE-K----------LHKSFVG-HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG------ 161 (346)
Q Consensus 100 ~l~~~~~dg~i~iwd~~~~-~----------~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~------ 161 (346)
..+.-..||.|..|-.... + ....+.. ....+..++++. +....+.-..||.|..|-....
T Consensus 64 ~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~-G~~h~~al~~~G~v~~wG~n~~GqLG~g 142 (389)
T 3kci_A 64 TLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNS-GGKHCLALSSEGEVYSWGEAEDGKLGHG 142 (389)
T ss_dssp EEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECT-TCSEEEEEETTSCEEEEECCGGGTTCSS
T ss_pred eEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECc-CCCeEEEEcCCCCEEEEeCCCCCcCCCC
Confidence 5566667899999964321 1 1111111 223455567776 6677777788999999964321
Q ss_pred -----eeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEEE
Q 019117 162 -----ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 236 (346)
Q Consensus 162 -----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (346)
.....+.. .....|..++.. ....+.-..+|.|..|-.......- .........|....
T Consensus 143 ~~~~~~~p~~v~~--l~~~~i~~va~G---~~hs~alt~~G~v~~wG~n~~GqLG-----------~~~~~~~~~p~~v~ 206 (389)
T 3kci_A 143 NRSPCDRPRVIES--LRGIEVVDVAAG---GAHSACVTAAGDLYTWGKGRYGRLG-----------HSDSEDQLKPKLVE 206 (389)
T ss_dssp SCCCEEEEEECGG--GTTSCEEEEEEC---SSEEEEEETTSCEEEEECCGGGTTC-----------SSSCCCEEEEEECG
T ss_pred CCccCcCCeEecc--cCCCeEEEEEeC---cCeEEEEeCCCeEEEeCCCCCCCcC-----------CCCCcccccceEec
Confidence 11111211 122356667653 4455566779999999765411100 00000001111111
Q ss_pred eecccceEEEEec--CCEEEEEeecCeEEEEcCCCCCCCCCC-----ccccccccccCCCcCeeEEEEeecCCcceEEEE
Q 019117 237 SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE-----GTADILQKYPVPECDIWFIKFSCDFHYNAAAIG 309 (346)
Q Consensus 237 ~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~ 309 (346)
......|..++.. ..+.+.-..||.|..|-....-+.-.. ..+..+..+ ....|..++.... ..+.-
T Consensus 207 ~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~--~~~~v~~v~~G~~----hs~al 280 (389)
T 3kci_A 207 ALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL--TGLGVVKVECGSQ----FSVAL 280 (389)
T ss_dssp GGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGG--TTSCEEEEEEETT----EEEEE
T ss_pred ccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEeccc--CCCcEEEEeCCCC----EEEEE
Confidence 1122345555543 256677788999999976543221000 000111111 1123555544432 34444
Q ss_pred cCCCcEEEEEcC
Q 019117 310 NREGKIFVWELQ 321 (346)
Q Consensus 310 ~~dg~i~iwd~~ 321 (346)
..||.|+.|-..
T Consensus 281 t~~G~v~~wG~n 292 (389)
T 3kci_A 281 TKSGAVYTWGKG 292 (389)
T ss_dssp ETTSCEEEEECC
T ss_pred eCCCeEEEEeCC
Confidence 678999999754
No 370
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=42.34 E-value=1.6e+02 Score=25.01 Aligned_cols=28 Identities=11% Similarity=-0.033 Sum_probs=20.1
Q ss_pred CceEEEEEEeecCCCcc--EEEEEcCCcEEEEEe
Q 019117 34 RPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQC 65 (346)
Q Consensus 34 ~~v~~~~~~p~~~~~~~--~la~~~~~~v~i~~~ 65 (346)
..-+.|+|.| ++. +|++-..+.|++++.
T Consensus 14 ~~P~~~a~~p----dG~~rl~V~er~G~i~~~~~ 43 (463)
T 2wg3_C 14 RQPVGALHSG----DGSQRLFILEKEGYVKILTP 43 (463)
T ss_dssp SSEEEEECCS----SSSCCEEEEETTTEEEEECT
T ss_pred CCceEEEECC----CCCeEEEEEeCCceEEEEeC
Confidence 3457899998 554 787776666888863
No 371
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=40.44 E-value=1.3e+02 Score=23.60 Aligned_cols=98 Identities=11% Similarity=-0.033 Sum_probs=51.0
Q ss_pred cCCCCcEEEEeecC--------------CeEEEEEccCcceeeeeccCCCceEEEEEeCCCCceEEEee----CCCCEEE
Q 019117 94 NVDGIPFLVAGGIN--------------GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS----KDESVRL 155 (346)
Q Consensus 94 ~~~~~~~l~~~~~d--------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----~d~~i~i 155 (346)
+++|. +|+-.... ..|+..+++..+...... .. ...|++ .++.|+-.. ....|..
T Consensus 61 ~~~g~-~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~---~~--~~~~s~-~g~~Iy~~~~~~~~~~~Iy~ 133 (302)
T 3s25_A 61 NADKN-YVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP---DP--CIYASL-IGNYIYYLHYDTQTATSLYR 133 (302)
T ss_dssp EECSS-EEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC---SC--EEEEEE-ETTEEEEEEESSSSCEEEEE
T ss_pred EEcCC-EEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec---CC--ccEEEE-eCCEEEEEeecCCCCceEEE
Confidence 47787 66655432 467777777665333222 12 225667 555655444 3345555
Q ss_pred EecCCCeeEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccc
Q 019117 156 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (346)
Q Consensus 156 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 206 (346)
.++.. .....+. .+.. .+++|.+..+..+......|..-++..
T Consensus 134 ~~~dG-s~~~~lt---~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g 176 (302)
T 3s25_A 134 IRIDG-EEKKKIK---NHYL----FTCNTSDRYFYYNNPKNGQLYRYDTAS 176 (302)
T ss_dssp EETTS-CCCEEEE---SSCC----CCSEEETTEEEEECTTTCCEEEEETTT
T ss_pred EECCC-CCeEEEe---CCCc----eEeeEECCEEEEEeCCCceEEEEECCC
Confidence 56653 3333443 1222 345663445555544456777777765
No 372
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=37.43 E-value=2.5e+02 Score=25.85 Aligned_cols=112 Identities=12% Similarity=0.003 Sum_probs=56.1
Q ss_pred ccceEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcceeeeeccC-------CCceEEEEEeCCCCceEEEeeCCCC---
Q 019117 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH-------GDSINEIRTQPLKPSLVVSASKDES--- 152 (346)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~s~~~d~~--- 152 (346)
...|..+.+. |.....++++...+.|...+ +.++.-..+..+ ...+.+|++.|.+...++.+..+..
T Consensus 14 ~g~i~~i~~~--p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~ 90 (789)
T 1sqj_A 14 GGYITGIVAH--PKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDE 90 (789)
T ss_dssp CSCEEEEEEC--SSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSS
T ss_pred CCcEEEEEEC--CCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCc
Confidence 3467667665 54333566666666655444 334322222221 2469999999854555555543211
Q ss_pred -EEEEec-CCCeeEEEecccCC------CCcceEEEEecCCCCcEEEEEecCC
Q 019117 153 -VRLWNV-QTGICILIFAGAGG------HRNEVLSVDFHPSDIYRIASCGMDN 197 (346)
Q Consensus 153 -i~iwd~-~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~s~~~d~ 197 (346)
-.||.- ..|+.-..+..... ....+..++++|.+...++.+...+
T Consensus 91 ~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~ 143 (789)
T 1sqj_A 91 WAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTE 143 (789)
T ss_dssp CCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSS
T ss_pred ccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccC
Confidence 334433 33443333321000 0113566888875556666665333
No 373
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=36.23 E-value=1.6e+02 Score=23.25 Aligned_cols=206 Identities=10% Similarity=0.002 Sum_probs=0.0
Q ss_pred CCCCcEEEEeecCCeEEEEEccCcceeeee--------ccCCCceEEEEEeCCCCceEEEeeCCCCEEEEecC-------
Q 019117 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSF--------VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ------- 159 (346)
Q Consensus 95 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~------- 159 (346)
|+.. ++++.+.+|.|+--.+.+-+....- ....+.+..+.... ....|+..+..|.+.-....
T Consensus 1 ~~e~-~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~-~~~~ll~fT~~G~~~~~~~~elp~~~~ 78 (307)
T 1zi0_A 1 TQED-VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVAN-THDHILCFSSRGRVYSMKVYQLPEATR 78 (307)
T ss_dssp CCCE-EEEEEETTSEEEEEECC--------------------CCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCCCCS
T ss_pred CCCc-EEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEEC-CCCEEEEEECCCEEEEEEhhHCcCCCC
Q ss_pred --CCeeEEEecccCCCCcceEEEEec--CCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCCCCCCccceeceEE
Q 019117 160 --TGICILIFAGAGGHRNEVLSVDFH--PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 235 (346)
Q Consensus 160 --~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (346)
.|.++..+-.......-+..+... . +..+++..+..|.++.-.+..+.. ..........
T Consensus 79 ~a~G~~i~~~l~l~~~e~i~~~~~~~~~~-~~~~ll~~T~~G~~Krt~l~e~~~----------------~~r~G~~~i~ 141 (307)
T 1zi0_A 79 GARGRPIVNLLPLEQDERITAILPVTEFE-EGVKVFMATANGTVKKTVLTEFNR----------------LRTAGKVAIK 141 (307)
T ss_dssp SSCCEEGGGTSCCCTTCCEEEEEEESCCC-TTCEEEEEETTSEEEEEEGGGGTT----------------CCTTCEESSC
T ss_pred CCCCeEhhhccCCCCCCEEEEEEEeccCC-CCcEEEEEeCCCeEEEEEHHHhhc----------------cccCCeEEEE
Q ss_pred EeecccceEEEEec-CCEEEEEeecCeEEEEcCCCCCCCCCCccccccccccCCCcCeeEEEEeecCCcceEEEEcCCCc
Q 019117 236 ASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK 314 (346)
Q Consensus 236 ~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~ 314 (346)
+..+..-+...... .+.++..+.+|.+..++...-............-.+...+ .|.++....++ ..++..+..|.
T Consensus 142 l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d-~Vv~~~~~~~~--~~ll~~T~~G~ 218 (307)
T 1zi0_A 142 LVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGD-KVVSLIVPRGD--GAILTATQNGY 218 (307)
T ss_dssp CCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTC-CEEEEECCCSS--CEEEEEETTSE
T ss_pred ECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCC-EEEEEEEecCC--CEEEEEEcCCc
Q ss_pred EEEEEcCC
Q 019117 315 IFVWELQS 322 (346)
Q Consensus 315 i~iwd~~~ 322 (346)
++-.++..
T Consensus 219 ~Kr~~~~e 226 (307)
T 1zi0_A 219 GKRTAVAE 226 (307)
T ss_dssp EEEECGGG
T ss_pred eEEEEHHH
No 374
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=31.14 E-value=2.2e+02 Score=23.28 Aligned_cols=211 Identities=10% Similarity=0.077 Sum_probs=105.5
Q ss_pred eEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc-----------eeeeecc-CCCceEEEEEeCCCCceEEEeeCCCCE
Q 019117 86 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-----------LHKSFVG-HGDSINEIRTQPLKPSLVVSASKDESV 153 (346)
Q Consensus 86 v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i 153 (346)
+..++++ .... ..+.-..||.|..|-....- ....+.. ....|..|+. +....+.-..||.|
T Consensus 107 ~~~v~i~--~G~~-h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~---G~~hs~alt~~G~v 180 (389)
T 3kci_A 107 IKKVAVN--SGGK-HCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA---GGAHSACVTAAGDL 180 (389)
T ss_dssp EEEEEEC--TTCS-EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE---CSSEEEEEETTSCE
T ss_pred eeEEEEC--cCCC-eEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe---CcCeEEEEeCCCeE
Confidence 3434443 3334 56666779999999653210 1111221 1225666665 44566666789999
Q ss_pred EEEecCCC-e----------eEEEecccCCCCcceEEEEecCCCCcEEEEEecCCeEEEEEccccceeeeeceeecCCCC
Q 019117 154 RLWNVQTG-I----------CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPS 222 (346)
Q Consensus 154 ~iwd~~~~-~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 222 (346)
..|-.... + ....+.. .....|..++... +....+.-..||.|..|-.......-.
T Consensus 181 ~~wG~n~~GqLG~~~~~~~~~p~~v~~--~~~~~v~~ia~G~-g~~~t~~l~~~G~v~~wG~n~~GqLG~---------- 247 (389)
T 3kci_A 181 YTWGKGRYGRLGHSDSEDQLKPKLVEA--LQGHRVVDIACGS-GDAQTLCLTDDDTVWSWGDGDYGKLGR---------- 247 (389)
T ss_dssp EEEECCGGGTTCSSSCCCEEEEEECGG--GTTSCEEEEEECC-SSCEEEEEETTTEEEEEECCGGGTTSS----------
T ss_pred EEeCCCCCCCcCCCCCcccccceEecc--cCCCeEEEEEEcC-CCcEEEEEccCCEEEEEeCCCCCCCCC----------
Confidence 99965321 0 1111111 1234567777643 345566667899999997654211000
Q ss_pred CCCCccceeceEEEeecccceEEEEecCCEEEEEeecCeEEEEcCCCCCCCCC---C--ccccccccccCCCcCeeEEEE
Q 019117 223 KFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPG---E--GTADILQKYPVPECDIWFIKF 297 (346)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~---~--~~~~~~~~~~~~~~~v~~~~~ 297 (346)
........|..........|..++.-..+.+.-..||.|..|-.....+.-. . ..+..+..+ ....|..++.
T Consensus 248 -g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l--~~~~v~~ia~ 324 (389)
T 3kci_A 248 -GGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL--QGKKVIAIAT 324 (389)
T ss_dssp -SSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGG--TTCCEEEEEE
T ss_pred -CCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccC--CCCCEEEEEe
Confidence 0000001111111111223566655566666778899999997654321100 0 001111111 1234555544
Q ss_pred eecCCcceEEEEcCCCcEEEEEcCC
Q 019117 298 SCDFHYNAAAIGNREGKIFVWELQS 322 (346)
Q Consensus 298 s~~~~~~~l~~~~~dg~i~iwd~~~ 322 (346)
... ..+....||.|+.|-...
T Consensus 325 G~~----h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 325 GSL----HCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp CSS----EEEEEETTCCEEEEECCT
T ss_pred ccC----eEEEECCCCCEEEeeCCC
Confidence 332 344557889999997654
No 375
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=27.58 E-value=3.5e+02 Score=24.55 Aligned_cols=68 Identities=13% Similarity=0.209 Sum_probs=38.5
Q ss_pred EcCCCCcEEEEeecC----CeEEEEEccCcceeee-ec-cCCC------ceEEEEEeCCCCceEEEe----------eCC
Q 019117 93 CNVDGIPFLVAGGIN----GIIRVIDVSNEKLHKS-FV-GHGD------SINEIRTQPLKPSLVVSA----------SKD 150 (346)
Q Consensus 93 ~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~-~~-~~~~------~v~~~~~~~~~~~~l~s~----------~~d 150 (346)
++|+++..+++-+.. ..++++|+.+++.+.. +. .-.. ....++|.. +...+++. +..
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d-~~~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWIN-KDTIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEE-TTEEEECCCCSTTCBCTTSSB
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEEC-CCEEEEEeCCCCCCcCcCCCC
Confidence 668988455554443 3799999999987642 22 0001 113457764 45555542 122
Q ss_pred CCEEEEecCCC
Q 019117 151 ESVRLWNVQTG 161 (346)
Q Consensus 151 ~~i~iwd~~~~ 161 (346)
..|+.|.+-+.
T Consensus 216 ~~v~~~~~Gt~ 226 (711)
T 4hvt_A 216 NSLYIWKRGES 226 (711)
T ss_dssp CEEEEEETTSC
T ss_pred CEEEEEECCCC
Confidence 45888877543
No 376
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=27.16 E-value=2.9e+02 Score=24.43 Aligned_cols=53 Identities=13% Similarity=0.231 Sum_probs=32.6
Q ss_pred EEcCCCCcEEEEeecC------------CeEEEEEccCcceeeeeccC-CCceEEEEEeCCCCceEEE
Q 019117 92 ACNVDGIPFLVAGGIN------------GIIRVIDVSNEKLHKSFVGH-GDSINEIRTQPLKPSLVVS 146 (346)
Q Consensus 92 ~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s 146 (346)
.+++.|. +++.-..+ ..+.+.+..+++..+.+.++ ...++.++|+| +++.|+.
T Consensus 482 ~fd~~G~-LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fsp-Dg~tlfv 547 (592)
T 3zwu_A 482 GFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP-DQKTLFV 547 (592)
T ss_dssp EECTTCC-EEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT-TSSEEEE
T ss_pred EECCCCC-EEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECC-CCCEEEE
Confidence 3458887 55543321 24556666677766555543 46899999999 5555544
No 377
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=26.06 E-value=3.1e+02 Score=24.66 Aligned_cols=58 Identities=5% Similarity=-0.024 Sum_probs=35.4
Q ss_pred ceEEEeeCCCCEEEE-ecCCCe-eEEEecccCCCCcceEEEEecCCCC--cEEEEEecCCeEEE
Q 019117 142 SLVVSASKDESVRLW-NVQTGI-CILIFAGAGGHRNEVLSVDFHPSDI--YRIASCGMDNTVKI 201 (346)
Q Consensus 142 ~~l~s~~~d~~i~iw-d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~s~~~d~~i~i 201 (346)
..+..|..+|.|.-. ...... .+..+... ....+|..|.+++ .. ..|+.++.++.+++
T Consensus 416 tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~-~~~~pI~~l~l~~-~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 416 DVMFVSTDRGALHKAISLEHAVHIIEETQLF-QDFEPVQTLLLSS-KKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEEETTSEEEEEEECSSSEEEEEEEECC-TTCCCCCEEEECC-SSSSCEEEEECSSCEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCceEEEEeccc-CCCCcceeeEecc-CCCccEEEEEEcCeEEEE
Confidence 367788888887433 333322 22222211 2457888999997 55 77888877765554
No 378
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=23.53 E-value=3e+02 Score=22.33 Aligned_cols=142 Identities=8% Similarity=-0.077 Sum_probs=67.3
Q ss_pred cEEEEEcCCcEEEEEecc-CceeeeEeeeecCCCccceEEEEEEEcC--CCCcEEEEeecCC----eEEEEEccCcceee
Q 019117 50 NVFATVGGNRVTVYQCLE-GGVIAALQSYVDEDKEESFYTVSWACNV--DGIPFLVAGGING----IIRVIDVSNEKLHK 122 (346)
Q Consensus 50 ~~la~~~~~~v~i~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~l~~~~~dg----~i~iwd~~~~~~~~ 122 (346)
..|..+...++.+++... +.....+... .....+.++++. | ++. |.++...| .|...+ +.++.-.
T Consensus 23 g~l~vgt~~Gl~~~~~~~~g~~W~~~~~~---~~~~~v~~i~~d--p~~~~~--l~~g~~~g~~g~gl~~s~-D~G~tW~ 94 (394)
T 3b7f_A 23 VMLLVATIKGAWFLASDPARRTWELRGPV---FLGHTIHHIVQD--PREPER--MLMAARTGHLGPTVFRSD-DGGGNWT 94 (394)
T ss_dssp CEEEEEETTEEEEEEECTTSCSEEEEEEE---STTSEEEEEEEC--SSSTTC--EEEEEEC--CCEEEEEES-STTSCCE
T ss_pred CEEEEEecCceEEEECCCCCCCceECCcc---CCCCceEEEEEC--CCCCCe--EEEEecCCCCCccEEEeC-CCCCCce
Confidence 355556567777776543 2333333211 134557666665 5 444 44444444 343332 2332211
Q ss_pred eec------c--------CCCceEEEEEeCCC-CceEEEeeCCCCEEEEecCCCeeEEEeccc----------------C
Q 019117 123 SFV------G--------HGDSINEIRTQPLK-PSLVVSASKDESVRLWNVQTGICILIFAGA----------------G 171 (346)
Q Consensus 123 ~~~------~--------~~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----------------~ 171 (346)
.+. . ....|.++++.|.+ ...+..+...+.|...+ ..++....+... .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~ 173 (394)
T 3b7f_A 95 EATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGT 173 (394)
T ss_dssp ECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----
T ss_pred ECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCC
Confidence 111 1 11257788898743 56666666656554443 223333322210 0
Q ss_pred CCCcceEEEEecCCCCcEEEEEecCCeEE
Q 019117 172 GHRNEVLSVDFHPSDIYRIASCGMDNTVK 200 (346)
Q Consensus 172 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 200 (346)
.....+.+|.++|.+...++.+..++.|.
T Consensus 174 ~~~~~i~~i~~d~~~~~~l~vg~~~ggl~ 202 (394)
T 3b7f_A 174 PDGPKMHSILVDPRDPKHLYIGMSSGGVF 202 (394)
T ss_dssp CCCCEEEEEEECTTCTTCEEEEEETBEEE
T ss_pred CCCCceeEEEECCCCCCEEEEEECCCCEE
Confidence 12246789999874444455554444433
No 379
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=20.58 E-value=3.4e+02 Score=23.63 Aligned_cols=67 Identities=12% Similarity=0.094 Sum_probs=38.9
Q ss_pred eEEEEEEEcCCCCcEEEEeecCCeEEEEEccCcc----eeeeec--cCCCceE-EEEEeCCCCceEEEeeCCCCEE
Q 019117 86 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK----LHKSFV--GHGDSIN-EIRTQPLKPSLVVSASKDESVR 154 (346)
Q Consensus 86 v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~--~~~~~v~-~~~~~~~~~~~l~s~~~d~~i~ 154 (346)
++.++.....+.. .+..|..+|.|.-..+.... .+..+. ....+|. .+.+++ +...|+.++.++.++
T Consensus 402 lT~vav~~~~~~t-V~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~-~~~~Lyv~s~~~V~k 475 (539)
T 3al9_A 402 LTSVASYVYNGYS-VVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSI-NQLYLYVMSERQVTR 475 (539)
T ss_dssp EEEEEEEEETTEE-EEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECT-TSSEEEEECSSEEEE
T ss_pred eEEEEeeccCCeE-EEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEcc-CCCeEEEEeccccce
Confidence 4445444323333 77788888887655543221 222222 2245775 888988 777888887665444
No 380
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=20.21 E-value=3.3e+02 Score=23.40 Aligned_cols=69 Identities=3% Similarity=-0.009 Sum_probs=40.9
Q ss_pred eEEEEEeCC-----CCceEEEeeCCCCEEEEecC-CCe-------eEEEecccCCCCcceEEEEecCCCCcEEEEEecCC
Q 019117 131 INEIRTQPL-----KPSLVVSASKDESVRLWNVQ-TGI-------CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN 197 (346)
Q Consensus 131 v~~~~~~~~-----~~~~l~s~~~d~~i~iwd~~-~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~ 197 (346)
.+.|+.... +-..+..|..+|.|.-.-+. .+. .+..+... ....+|..|.+++ ....|+.++.++
T Consensus 406 lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~-~~~~pI~~m~l~~-~~~~Lyv~s~~~ 483 (495)
T 1q47_A 406 FTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVF-REPTTISAMELST-KQQQLYIGSTAG 483 (495)
T ss_dssp EEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCS-SSCCCCCEEEEET-TTTEEEEEBSSC
T ss_pred eEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeec-CCCCccceEEEcC-CCCEEEEEECCe
Confidence 466655431 22356778889987544332 211 22233311 1357899999998 778888888777
Q ss_pred eEEE
Q 019117 198 TVKI 201 (346)
Q Consensus 198 ~i~i 201 (346)
.+++
T Consensus 484 V~~v 487 (495)
T 1q47_A 484 VAQL 487 (495)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
Done!