Query 019118
Match_columns 346
No_of_seqs 315 out of 1881
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 06:50:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019118.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019118hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02164 sulfotransferase 100.0 3.6E-82 7.9E-87 601.7 30.0 310 26-343 30-344 (346)
2 KOG1584 Sulfotransferase [Gene 100.0 8.2E-82 1.8E-86 575.5 25.1 294 37-344 1-296 (297)
3 PF00685 Sulfotransfer_1: Sulf 100.0 1.9E-39 4.1E-44 298.4 12.3 249 74-339 1-267 (267)
4 PF13469 Sulfotransfer_3: Sulf 98.9 6.9E-10 1.5E-14 97.1 2.8 85 166-266 126-214 (215)
5 KOG3988 Protein-tyrosine sulfo 98.6 1.4E-08 3E-13 92.3 2.9 150 166-341 175-328 (378)
6 PF09037 Sulphotransf: Stf0 su 98.0 1.2E-06 2.6E-11 80.4 0.6 92 168-266 113-219 (245)
7 KOG3704 Heparan sulfate D-gluc 97.8 2.1E-05 4.6E-10 71.4 4.9 152 166-344 188-359 (360)
8 KOG3703 Heparan sulfate N-deac 97.7 0.00043 9.3E-09 68.7 11.5 95 167-263 686-790 (873)
9 KOG3922 Sulfotransferases [Pos 94.3 0.052 1.1E-06 50.6 4.0 99 76-191 80-183 (361)
10 PF03567 Sulfotransfer_2: Sulf 93.2 0.077 1.7E-06 47.7 3.2 26 74-99 8-33 (253)
11 PF06990 Gal-3-0_sulfotr: Gala 92.9 0.26 5.7E-06 48.6 6.6 124 70-207 63-189 (402)
12 KOG4157 beta-1,6-N-acetylgluco 88.7 0.3 6.5E-06 48.1 2.5 207 68-332 198-407 (418)
13 COG4424 Uncharacterized protei 73.3 3 6.4E-05 37.1 2.6 51 236-288 188-238 (250)
14 KOG4651 Chondroitin 6-sulfotra 56.9 4.9 0.00011 38.5 0.9 33 71-103 78-110 (324)
15 COG4424 Uncharacterized protei 52.5 14 0.00031 32.9 3.0 26 76-101 7-32 (250)
16 PF07498 Rho_N: Rho terminatio 36.7 31 0.00067 22.5 2.1 37 244-280 1-37 (43)
17 cd00808 GluRS_core catalytic c 34.8 66 0.0014 29.4 4.6 53 212-266 12-69 (239)
18 COG1158 Rho Transcription term 33.3 40 0.00088 32.5 3.0 25 78-102 177-202 (422)
19 PF13671 AAA_33: AAA domain; P 30.8 37 0.00079 27.4 2.1 20 77-96 2-22 (143)
20 PF07582 AP_endonuc_2_N: AP en 26.0 2E+02 0.0043 19.9 4.7 28 235-262 15-42 (55)
21 COG4088 Predicted nucleotide k 25.9 64 0.0014 29.2 2.8 24 77-100 4-28 (261)
22 PF01498 HTH_Tnp_Tc3_2: Transp 24.4 1.3E+02 0.0028 21.3 3.9 62 244-335 7-71 (72)
23 COG3551 Uncharacterized protei 24.2 2E+02 0.0044 27.4 5.8 77 169-268 135-213 (402)
24 PF03484 B5: tRNA synthetase B 23.8 86 0.0019 22.5 2.8 28 253-285 8-35 (70)
25 PF03205 MobB: Molybdopterin g 23.0 93 0.002 25.7 3.2 25 77-101 3-28 (140)
No 1
>PLN02164 sulfotransferase
Probab=100.00 E-value=3.6e-82 Score=601.66 Aligned_cols=310 Identities=42% Similarity=0.808 Sum_probs=273.4
Q ss_pred hHHHHHHHhcCCCCCCCcccc-eeeEccEeechhhHHHHHHHHhcCccCCCCEEEecCCCccchHHHHHHHHHHhcCCCC
Q 019118 26 SSECKEVLLSLPKERGWRTAF-LYKFQGYWCQAKEIQAIMAFQKHFKAKDTDIILASIPKSGTTWMKALSFAIINRKNFP 104 (346)
Q Consensus 26 ~~~~~~~~~~~p~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~f~~r~~DV~i~SyPKSGTTWl~~il~~i~~~~~~~ 104 (346)
..+++++|+|||++++|.... +++|+|+|||..++++++.++++|++|++||||||||||||||||+|+++|++++.++
T Consensus 30 ~~~~~~~~~~lp~~~~~~~~~~~~~y~G~w~~~~~~~~~~~~~~~f~~r~~DV~laSyPKsGTTWlq~iv~~i~~~~~~~ 109 (346)
T PLN02164 30 QKRYQDLIATLPHKKGWRPKEPLIEYGGHWWLQPLLEGLLHAQEFFQARPNDFLVCSYPKTGTTWLKALTFAIANRSRFD 109 (346)
T ss_pred hHHHHHHHhhCCCCcCCCCCCCeEEECCEEechhhhHHHHHHHHcCCCCCCCEEEEcCCCchhHHHHHHHHHHHcCCCcc
Confidence 348999999999999997665 8999999999988899999999999999999999999999999999999999988775
Q ss_pred CCCCCCCCCCCCCcCCCCCcccceecccccCCChhhhhhCCCCCeEEEecCCCcccCCCcCCCCCeEEEEeeCCcceeeh
Q 019118 105 IISDHHGHPHPLLTSNPHDLVPFLEYKLYANNQIPELSQIADEPRVFATHIPFASLNLLPSMNNIKIVYICRNPFDTFIS 184 (346)
Q Consensus 105 ~~~~~~~~~~~l~~~~~~~~~P~lE~~~~~~~~~~~~~~~~~~pr~iktHl~~~~lp~~~~~~~~K~I~ivRdPrDv~vS 184 (346)
. .. +|+...+|++++||||.........+.+++ + +||++|||+|++++|+++..++||+|||+|||+|++||
T Consensus 110 ~-----~~-~pl~~~~p~~~vP~lE~~~~~~~~~~~l~~-~-~PRlikTHlp~~~lP~~i~~~~~KiIyv~RnPkDv~VS 181 (346)
T PLN02164 110 D-----SS-NPLLKRNPHEFVPYIEIDFPFFPSVDVLKD-K-GNTLFSTHIPYGLLPDSVVKSGCKMVYIWRDPKDTFIS 181 (346)
T ss_pred c-----cc-CcccccCccccCCceecccCCCCchhhhcc-C-CCCeeEecCChhhCccccccCCceEEEEecCchhheee
Confidence 4 23 788888899999999986543223444554 7 99999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCCCCCCCHHHHHHHhhccccccCchHHHHHHHHHhhcCCCCeEEEEecccccccHHHHHHHHHHHhCCCC
Q 019118 185 SWHFLNKLRSQGLPEISLEEAFKMYCDGVIGFGPFWEHMLGYWNESLKRPNNVLFLKYDDMKQDIVSNLKKLASFLGFPF 264 (346)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~g~~~~hv~~~w~~~~~~~~~vl~l~YEDL~~dp~~~l~rI~~FLg~~~ 264 (346)
+|||...........++|+++++.||.|...+|+||+|+++||+.+.+.+++||+|+||||++||.++|+|||+|||+++
T Consensus 182 ~yhf~~~~~~~~~~~~s~ee~~e~f~~g~~~~G~y~dHv~~yw~~~~~~p~~VLfl~YEDmk~D~~~~v~ria~FLG~~~ 261 (346)
T PLN02164 182 MWTFLHKERSQQGPLNSLEESFDMFCRGLSVYGPYLDHVLGYWKAYQENPDRILFLKYETMRADPLPYVKRLAEFMGYGF 261 (346)
T ss_pred HHHHHhhccccCCCCCCHHHHHHHHHcCCCCCCcHHHHHHHHHHHhhcCCccEEEEEHHHHHHhHHHHHHHHHHHhCCCC
Confidence 99998766543223468999999999999999999999999999864456799999999999999999999999999999
Q ss_pred ChHhhhhhHHHHHHhhcCHHHHhhhhhhcCCCCccC----CCCCCeeeccccCCCccCCcHHHHHHHHHHHHhHcCCCCc
Q 019118 265 SPEEEKQGVIQDIAKLCSFEEMKKLDVNKNGKSIKD----IENKYLFRKGEVGDWVNYLSPSMVKQLSLIMEEKLDASGL 340 (346)
Q Consensus 265 ~~~~~~~~~l~~iv~~~Sf~~mk~~~~~~~~~~~~~----~~~~~f~RkG~vGdWk~~ft~e~~~~~~~~~~e~l~~~gl 340 (346)
++++++++++++|+++|||++||++++|+.+..... ..+..|||||++|||||+||+||+++|+++++++|+|+||
T Consensus 262 s~ee~~~~~v~~ive~~SFe~Mk~~e~n~~~~~~~~~~~~~~~~~FfRKG~vGdWkn~lt~e~~~r~d~~~~ekl~gsgl 341 (346)
T PLN02164 262 TAEEEEKGVVEKVVKLCSFETLKNLEANKGEKDREDRPAVYANSAYFRKGKVGDWQNYLTPEMAARIDGLMEEKFKGTGL 341 (346)
T ss_pred chhhcchHHHHHHHHHCCHHHHhhhHhhccccccccccccccCcceeeccCCCCCcccCCHHHHHHHHHHHHHHhcCCCC
Confidence 998778889999999999999999987765532111 2456799999999999999999999999999999999999
Q ss_pred eee
Q 019118 341 SFK 343 (346)
Q Consensus 341 ~f~ 343 (346)
.|.
T Consensus 342 ~~~ 344 (346)
T PLN02164 342 LEH 344 (346)
T ss_pred ccc
Confidence 984
No 2
>KOG1584 consensus Sulfotransferase [General function prediction only]
Probab=100.00 E-value=8.2e-82 Score=575.49 Aligned_cols=294 Identities=47% Similarity=0.875 Sum_probs=263.4
Q ss_pred CCCCCCcc-cceeeEccEeechhhHHHHHHHHhcCccCCCCEEEecCCCccchHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 019118 37 PKERGWRT-AFLYKFQGYWCQAKEIQAIMAFQKHFKAKDTDIILASIPKSGTTWMKALSFAIINRKNFPIISDHHGHPHP 115 (346)
Q Consensus 37 p~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~f~~r~~DV~i~SyPKSGTTWl~~il~~i~~~~~~~~~~~~~~~~~~ 115 (346)
|...+|.+ ..++.|+|+|+++.+.+++..++++|++|+||||||||||||||||++|+++|+++++++. ++. ||
T Consensus 1 p~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~Fq~r~dDiiiaTyPKsGTTWlkel~~~i~~~~d~~~----~~~-~p 75 (297)
T KOG1584|consen 1 PSEKGSRGRFKLVEYQGCWYPPKFLQALLRVQKHFQARPDDVIIATYPKSGTTWLQELTFLILNRGDFEK----AKR-HP 75 (297)
T ss_pred CCccCcCCCcCeEEECCEEecHHHHHHHHHHHhcCCCCCCCEEEEecCCCchHHHHHHHHHHHcCCCccc----ccC-Cc
Confidence 45666765 7789999999999999999999999999999999999999999999999999999998765 444 89
Q ss_pred CCcCCCCCcccceecccccCCChhhhhhCCCCCeEEEecCCCcccCCCcCCCCCeEEEEeeCCcceeehhhhhhhhhccC
Q 019118 116 LLTSNPHDLVPFLEYKLYANNQIPELSQIADEPRVFATHIPFASLNLLPSMNNIKIVYICRNPFDTFISSWHFLNKLRSQ 195 (346)
Q Consensus 116 l~~~~~~~~~P~lE~~~~~~~~~~~~~~~~~~pr~iktHl~~~~lp~~~~~~~~K~I~ivRdPrDv~vS~~~~~~~~~~~ 195 (346)
|...+|+..+|++|..... ...+..++ |||+++||+|+.+||+++.+++||+||++|||+||+||+|||.++....
T Consensus 76 L~~~~P~~e~p~~e~~~~~---~~~~~~l~-SPRl~kTHlP~~lLp~s~~~~~cKvVYv~RNpKD~~VSy~hf~~~~~~~ 151 (297)
T KOG1584|consen 76 LLERNPHLEVPFLELQLYG---NDSAPDLP-SPRLFKTHLPFQLLPESLKESKCKVVYVCRNPKDVLVSYYHFNRMLKTQ 151 (297)
T ss_pred hhhcCCceeeccccccccc---ccccccCC-CCcceeccCChhhcchhhhcCCCcEEEEecCccceeeeHHHHHhhhccC
Confidence 9999999999988876653 45666778 9999999999999999999999999999999999999999999988766
Q ss_pred CCCCCCHHHHHHHhhccccccCchHHHHHHHHHhhcCCCCeEEEEecccccccHHHHHHHHHHHhCCCCChHhhhhhHHH
Q 019118 196 GLPEISLEEAFKMYCDGVIGFGPFWEHMLGYWNESLKRPNNVLFLKYDDMKQDIVSNLKKLASFLGFPFSPEEEKQGVIQ 275 (346)
Q Consensus 196 ~~~~~~~~~~~~~f~~g~~~~g~~~~hv~~~w~~~~~~~~~vl~l~YEDL~~dp~~~l~rI~~FLg~~~~~~~~~~~~l~ 275 (346)
..+++|++|++.||+|.+.||+||+||++||+. ++++|||+++||||++||..+|+|||+|||.++++++++.++..
T Consensus 152 -~~~~~~e~~fe~F~~G~~~~Gp~~dHVl~~W~~--~~~~~VLFl~YEdmk~dp~~~ikrlaeFLg~~~~~Ee~~~~~~~ 228 (297)
T KOG1584|consen 152 -PGPGTFEEFFESFCNGVVPYGPWWDHVLGYWEL--EDPKNVLFLKYEDMKADPKGEIKKLAEFLGCPFTKEEEDKGVVH 228 (297)
T ss_pred -CCCCcHHHHHHHHhCCcCCcCChHHHHHHHHHh--cCCCceEEEEHHHhhhCHHHHHHHHHHHhCCCCCHHHHhhhhHH
Confidence 345679999999999999999999999999995 57889999999999999999999999999999999997777777
Q ss_pred HHHhhcCHHHHhhhhhhcCCCCccCCCCCCeeeccccCCCccCCcHHHHHHHHHHHHhHcCC-CCceeee
Q 019118 276 DIAKLCSFEEMKKLDVNKNGKSIKDIENKYLFRKGEVGDWVNYLSPSMVKQLSLIMEEKLDA-SGLSFKV 344 (346)
Q Consensus 276 ~iv~~~Sf~~mk~~~~~~~~~~~~~~~~~~f~RkG~vGdWk~~ft~e~~~~~~~~~~e~l~~-~gl~f~~ 344 (346)
.+++.|++++|++.+.|..+... ...+.|||||.+||||||||++|+++||.+++++|++ +||.|++
T Consensus 229 ~~~~~~~~n~l~nle~n~~~~~~--~~~~~F~RKG~vGDWKn~~T~~~~ekfD~~~eekm~g~sgL~F~~ 296 (297)
T KOG1584|consen 229 LSFELCSLNPLSNLEVNKTEKLL--HKISPFFRKGEVGDWKNYLTPEMNEKFDKIYEEKMEGCSGLKFRT 296 (297)
T ss_pred HHHHHHhhccccCceeccccccc--ccchhhhcCCCcccccccCCHHHHHHHHHHHHHHhcCCCCccccc
Confidence 77788888888887777766532 2237899999999999999999999999999999999 8999975
No 3
>PF00685 Sulfotransfer_1: Sulfotransferase domain; InterPro: IPR000863 This family includes a range of sulphotransferase proteins including flavonyl 3-sulphotransferase, aryl sulphotransferase, alcohol sulphotransferase, oestrogen sulphotransferase and phenol-sulphating phenol sulphotransferase. These enzymes are responsible for the transfer of sulphate groups to specific compounds.; GO: 0008146 sulfotransferase activity; PDB: 3MGC_A 3MGB_A 3MG9_A 1G3M_B 1HY3_B 2QP4_A 3F3Y_C 1EFH_A 1OV4_A 1J99_A ....
Probab=100.00 E-value=1.9e-39 Score=298.41 Aligned_cols=249 Identities=28% Similarity=0.512 Sum_probs=183.6
Q ss_pred CCCEEEecCCCccchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcCCCCCcccceeccc-----------------ccCC
Q 019118 74 DTDIILASIPKSGTTWMKALSFAIINRKNFPIISDHHGHPHPLLTSNPHDLVPFLEYKL-----------------YANN 136 (346)
Q Consensus 74 ~~DV~i~SyPKSGTTWl~~il~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~P~lE~~~-----------------~~~~ 136 (346)
+++|+|+|+||||||||++||........... .. .+..... .+..|+++... ....
T Consensus 1 ~~~i~I~g~prSGTt~l~~lL~~h~~~~~~~~----~~--~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (267)
T PF00685_consen 1 PPPIFIVGAPRSGTTWLRELLNSHPDIFSFSP----FK--EPHFFNN-RDYSPFLEWYRDFFPFRIKPQEHIPSFSHVES 73 (267)
T ss_dssp TTSEEEEESTTSSHHHHHHHHHHHHTTTETHH----HT--SSHHTTT-HHHSTBTTHHHHTSHEEGTTTEEEGGCTTTET
T ss_pred CCCEEEECCCCCcHHHHHHHHHhCcccccccc----cc--cccccch-hhhhhhhhhhhcccccccccccccccccccch
Confidence 57999999999999999999999654332210 00 1111111 33445544310 0001
Q ss_pred ChhhhhhCCCCCeEEEecCCCcccCCCcCCCCCeEEEEeeCCcceeehhhhhhhhhccCCCCCC-CHHHHHHHhhccccc
Q 019118 137 QIPELSQIADEPRVFATHIPFASLNLLPSMNNIKIVYICRNPFDTFISSWHFLNKLRSQGLPEI-SLEEAFKMYCDGVIG 215 (346)
Q Consensus 137 ~~~~~~~~~~~pr~iktHl~~~~lp~~~~~~~~K~I~ivRdPrDv~vS~~~~~~~~~~~~~~~~-~~~~~~~~f~~g~~~ 215 (346)
....+...+ .+++++||+++..++..+..+++|+|+|+|||+|+++|.+++........ ..+ .++++++.++.....
T Consensus 74 ~~~~~~~~~-~~~~~~~H~~~~~~~~~~~~~~~KiI~ivRdP~d~~~S~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 151 (267)
T PF00685_consen 74 KIVRLRDLP-SPRFIKTHLPLDLLPKKLLFPNAKIIYIVRDPRDVIVSRYKHSWRSNPFS-DPGQRFEEFVDWFLQPRLL 151 (267)
T ss_dssp HHHHHHCSC-SSEEEEE-S-GGGSHHHHHHTTEEEEEEE--HHHHHHHHHHHHHHBTTST-THHSHHHHHHHHHHTTHST
T ss_pred hHHHHhhcc-CchhhhhccccccccccccccccccceecccccchhHHHHHHHHhccccc-ccchhhhhhhhhhhccccc
Confidence 223456667 89999999998877655446799999999999999999999987654321 122 378888888888788
Q ss_pred cCchHHHHHHHHHhhcCCCCeEEEEecccccccHHHHHHHHHHHhCCCCChHhhhhhHHHHHHhhcCHHHHhhhhhhcCC
Q 019118 216 FGPFWEHMLGYWNESLKRPNNVLFLKYDDMKQDIVSNLKKLASFLGFPFSPEEEKQGVIQDIAKLCSFEEMKKLDVNKNG 295 (346)
Q Consensus 216 ~g~~~~hv~~~w~~~~~~~~~vl~l~YEDL~~dp~~~l~rI~~FLg~~~~~~~~~~~~l~~iv~~~Sf~~mk~~~~~~~~ 295 (346)
++.|++++..||.. ..++++++|+||||+.||.+++++|++|||++++++. ++.+++++++++|+........
T Consensus 152 ~~~~~~~~~~~~~~--~~~~~~~~i~YEdl~~dp~~~l~~I~~FLgl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
T PF00685_consen 152 YGSWADHLKSWLSS--FDRDNVLIIRYEDLVADPEKELKRICDFLGLPFSDEP-----LDKIVEKSSFDNMRSKEARNKS 224 (267)
T ss_dssp TSCHHHHHHHHHHH--TTTSTEEEEEHHHHHHSHHHHHHHHHHHTTSS--HHH-----HHHHHHHTSHHHHHHETTTSST
T ss_pred cccccccccchhhh--hccchhhhhcchhhhhhhhHHHHHHHHHHhhccchhh-----hHHHHHhhhhhhhccccccccc
Confidence 89999999999985 3457999999999999999999999999999999988 9999999999999986543221
Q ss_pred CCccCCCCCCeeeccccCCCccCCcHHHHHHHHHHHHhHcCCCC
Q 019118 296 KSIKDIENKYLFRKGEVGDWVNYLSPSMVKQLSLIMEEKLDASG 339 (346)
Q Consensus 296 ~~~~~~~~~~f~RkG~vGdWk~~ft~e~~~~~~~~~~e~l~~~g 339 (346)
... +.....++|+|.+|+||++||+++++.|+++|++.|+.+|
T Consensus 225 ~~~-~~~~~~~~~~~~~~~W~~~l~~e~~~~i~~~~~~~m~~~~ 267 (267)
T PF00685_consen 225 KLS-DGSSSRFFRKGKSGRWKNELSPEQIDRIERICGDAMRELG 267 (267)
T ss_dssp TSC-TTTTSTSSEET-STGGGGTSBHHHHHHHHHHHHHHHTTSS
T ss_pred ccc-cCCcceeeeecccCcccccCCHHHHHHHHHHHHHHHccCC
Confidence 100 0134678999999999999999999999999999999987
No 4
>PF13469 Sulfotransfer_3: Sulfotransferase family; PDB: 3AP1_B 3AP3_B 3AP2_B 3RNL_A 2Z6V_A 2ZQ5_A.
Probab=98.89 E-value=6.9e-10 Score=97.10 Aligned_cols=85 Identities=16% Similarity=0.308 Sum_probs=41.4
Q ss_pred CCCCeEEEEeeCCcceeehhhhhhhhhccC-CCCCCCHHHHHHHhhccccc---cCchHHHHHHHHHhhcCCCCeEEEEe
Q 019118 166 MNNIKIVYICRNPFDTFISSWHFLNKLRSQ-GLPEISLEEAFKMYCDGVIG---FGPFWEHMLGYWNESLKRPNNVLFLK 241 (346)
Q Consensus 166 ~~~~K~I~ivRdPrDv~vS~~~~~~~~~~~-~~~~~~~~~~~~~f~~g~~~---~g~~~~hv~~~w~~~~~~~~~vl~l~ 241 (346)
.|+ |+|+++|||+|++.|+.......... .................... ++..|..+...| +
T Consensus 126 ~p~-~~V~i~RdP~~~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~ 191 (215)
T PF13469_consen 126 FPD-RFVHIVRDPRDVAASWLRMFLRHLLRRSFYEDQWARWYWEWRRALRRWRDYPHRWLRVRYEW-------------R 191 (215)
T ss_dssp STT-EEEEEE--HHHHHHHHHHHCHHHHHCTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------E
T ss_pred CCC-eEEEEEeChHHHHhhHHHHhhhhhhhcccchhhhHHhHHHHHHHHHhhcccHHHHHHHHhhc-------------C
Confidence 468 99999999999999976655221111 00111111100000000000 111122222211 6
Q ss_pred cccccccHHHHHHHHHHHhCCCCCh
Q 019118 242 YDDMKQDIVSNLKKLASFLGFPFSP 266 (346)
Q Consensus 242 YEDL~~dp~~~l~rI~~FLg~~~~~ 266 (346)
||||.+||.+++++|++ + +++++
T Consensus 192 yedl~~~p~~~l~~i~~-~-~~l~~ 214 (215)
T PF13469_consen 192 YEDLVADPEATLRRICA-L-LELTR 214 (215)
T ss_dssp HHHHHHSHHHHHHHHHH-C-----H
T ss_pred HHHHHHCHHHHHHHHHH-h-hCCcC
Confidence 79999999999999999 6 77653
No 5
>KOG3988 consensus Protein-tyrosine sulfotransferase TPST1/TPST2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.4e-08 Score=92.29 Aligned_cols=150 Identities=15% Similarity=0.225 Sum_probs=87.4
Q ss_pred CCCCeEEEEeeCCcceeehhhhhhhhhccCCCCCCCHHHHHHHhhccccccCchHHHHHHH--HHhhcCCCCeEEEEecc
Q 019118 166 MNNIKIVYICRNPFDTFISSWHFLNKLRSQGLPEISLEEAFKMYCDGVIGFGPFWEHMLGY--WNESLKRPNNVLFLKYD 243 (346)
Q Consensus 166 ~~~~K~I~ivRdPrDv~vS~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~g~~~~hv~~~--w~~~~~~~~~vl~l~YE 243 (346)
.|++|+++++||.|.++-|.--.--...+ -++.+|.+-+. -|++..+- .+-..-..++++.|.||
T Consensus 175 fPNAKfllMvRDgRAtVhSmIsRKVtIaG-----fdlssyr~c~t--------kWN~aie~M~~QC~~vg~~~Cl~VyYE 241 (378)
T KOG3988|consen 175 FPNAKFLLMVRDGRATVHSMISRKVTIAG-----FDLSSYRQCMT--------KWNQAIEVMYFQCMEVGKKKCLKVYYE 241 (378)
T ss_pred CCCceEEEEEecchHHHHHHHhccceecc-----ccchHHHHHHH--------HHHHHHHHHHHHHHhccccchhHHHHH
Confidence 47999999999999998887643222111 12333332211 12222111 01100123589999999
Q ss_pred cccccHHHHHHHHHHHhCCCCChHhhhhhHH--HHHHhhcCHHHHhhhhhhcCCCCccCCCCCCeeeccccCCCccCCcH
Q 019118 244 DMKQDIVSNLKKLASFLGFPFSPEEEKQGVI--QDIAKLCSFEEMKKLDVNKNGKSIKDIENKYLFRKGEVGDWVNYLSP 321 (346)
Q Consensus 244 DL~~dp~~~l~rI~~FLg~~~~~~~~~~~~l--~~iv~~~Sf~~mk~~~~~~~~~~~~~~~~~~f~RkG~vGdWk~~ft~ 321 (346)
.|+..|.+.+++|.+||++++++.. + +..+-...=-.+.+.| ++. ++ -.+-+.-+--..|-..+++
T Consensus 242 qLVlhPe~~mr~Il~FLdipw~d~v-----LhHedlIgk~~gVsLskvE--rSs----dQ-VikpVNl~AlskWvg~ip~ 309 (378)
T KOG3988|consen 242 QLVLHPEEWMRRILKFLDIPWSDAV-----LHHEDLIGKPGGVSLSKVE--RSS----DQ-VIKPVNLEALSKWVGCIPE 309 (378)
T ss_pred HHHhCHHHHHHHHHHHhCCCcHHHH-----HhHHHhcCCCCCCChhhhh--ccH----hh-hhccccHHHHHHHhccCCH
Confidence 9999999999999999999998875 2 1111110000011100 000 00 0111233455689999999
Q ss_pred HHHHHHHHHHHhHcCCCCce
Q 019118 322 SMVKQLSLIMEEKLDASGLS 341 (346)
Q Consensus 322 e~~~~~~~~~~e~l~~~gl~ 341 (346)
+-.+.++.+ +..|+.+||.
T Consensus 310 dvvrdma~i-APmL~~LGYD 328 (378)
T KOG3988|consen 310 DVVRDMADI-APMLAILGYD 328 (378)
T ss_pred HHHHHHHHH-HHHHHHhCCC
Confidence 999998865 5677777875
No 6
>PF09037 Sulphotransf: Stf0 sulphotransferase; InterPro: IPR024628 Members of this family are essential for the biosynthesis of sulpholipid-1 in prokaryotes. They adopt a structure that belongs to the sulphotransferase superfamily, consisting of a single domain with a core four-stranded parallel beta-sheet flanked by alpha-helices []. ; PDB: 1TEX_B.
Probab=98.03 E-value=1.2e-06 Score=80.39 Aligned_cols=92 Identities=15% Similarity=0.203 Sum_probs=48.4
Q ss_pred CCeEEEEee-CCcceeehhhhhhhhhccCC----CC----------CCCHHHHHHHhhccccccCchHHHHHHHHHhhcC
Q 019118 168 NIKIVYICR-NPFDTFISSWHFLNKLRSQG----LP----------EISLEEAFKMYCDGVIGFGPFWEHMLGYWNESLK 232 (346)
Q Consensus 168 ~~K~I~ivR-dPrDv~vS~~~~~~~~~~~~----~~----------~~~~~~~~~~f~~g~~~~g~~~~hv~~~w~~~~~ 232 (346)
+.++||+.| |-..-+||++.-.+...... .. ..++++.. ..+.-... .-.....|...
T Consensus 113 ~~~~I~L~R~d~l~QAvS~~~A~qtg~w~~~~~~~~~~r~~~~~~~~yd~~~i~-~~i~~i~~---~~~~w~~~f~~--- 185 (245)
T PF09037_consen 113 DVKFIHLRRRDLLRQAVSLWRARQTGVWHQHADGTRDERVSPPRKPRYDFEEIA-HLIDRIED---QEAFWRNWFAR--- 185 (245)
T ss_dssp S-EEEEEE-S-HHHHHHHHHHHHHHS-----------TT----------HHHHH-HHHHHHHH---HHHHHHHHHHH---
T ss_pred CeEEEEEEeCCHHHHHHHHHHHHhCCCcccCCCCCccccccccccceeCHHHHH-HHHHHHHH---HHHHHHHHHHH---
Confidence 489999997 99999999987544321110 00 01111111 11110000 00111233332
Q ss_pred CCCeEEEEecccccccHHHHHHHHHHHhCCCCCh
Q 019118 233 RPNNVLFLKYDDMKQDIVSNLKKLASFLGFPFSP 266 (346)
Q Consensus 233 ~~~~vl~l~YEDL~~dp~~~l~rI~~FLg~~~~~ 266 (346)
...+-+.|.||||.+||.+++.+|++|||++...
T Consensus 186 ~~i~pl~i~YEdL~~dp~~~~~~Vl~fLgv~~~~ 219 (245)
T PF09037_consen 186 HGIEPLEITYEDLLADPQKTVARVLDFLGVDPPL 219 (245)
T ss_dssp TT---EEEEHHHHHHHHHHHHHHHHHHTTS-GGG
T ss_pred cCCCeeEEEHHHHHhCHHHHHHHHHHHhCCCCcc
Confidence 2235589999999999999999999999997544
No 7
>KOG3704 consensus Heparan sulfate D-glucosaminyl 3-O-sulfotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=2.1e-05 Score=71.45 Aligned_cols=152 Identities=18% Similarity=0.290 Sum_probs=93.6
Q ss_pred CCCCeEEEEeeCCcceeehhhhhhhhhccCCCCCCCHHHHHHHhhc---cc-------cccCchHHHHHHHHHhhcCCCC
Q 019118 166 MNNIKIVYICRNPFDTFISSWHFLNKLRSQGLPEISLEEAFKMYCD---GV-------IGFGPFWEHMLGYWNESLKRPN 235 (346)
Q Consensus 166 ~~~~K~I~ivRdPrDv~vS~~~~~~~~~~~~~~~~~~~~~~~~f~~---g~-------~~~g~~~~hv~~~w~~~~~~~~ 235 (346)
+++.|.|+|+|||.-.++|-|-....... ...+|+.. .|-. |. +..|-|-.|+..|++.. .-.
T Consensus 188 ~pd~KLivvvR~PvtRaiSDyTQt~sk~~---~~P~fe~l--afkn~~~g~id~~w~ai~iglY~~Hle~WL~yF--pL~ 260 (360)
T KOG3704|consen 188 NPDTKLIVVVRDPVTRAISDYTQTLSKKP---DIPTFEVL--AFKNRTAGLIDTSWKAIRIGLYAVHLENWLRYF--PLR 260 (360)
T ss_pred CCCceEEEEEcCchhhhHHHHHHHHhcCC---CCCceeee--eeecCccceeecchhhhhhhHHHHHHHHHHHhC--chh
Confidence 57899999999999999999976543222 11233321 1111 11 23456888999987753 235
Q ss_pred eEEEEecccccccHHHHHHHHHHHhCCCCChHhhhhhHHHHHHhhcCHHH------HhhhhhhcCCCCccCCCCCCeeec
Q 019118 236 NVLFLKYDDMKQDIVSNLKKLASFLGFPFSPEEEKQGVIQDIAKLCSFEE------MKKLDVNKNGKSIKDIENKYLFRK 309 (346)
Q Consensus 236 ~vl~l~YEDL~~dp~~~l~rI~~FLg~~~~~~~~~~~~l~~iv~~~Sf~~------mk~~~~~~~~~~~~~~~~~~f~Rk 309 (346)
++|+|.=|-|+.||.+++.|+-+|||++-.-.+ ++--|++ +|+.+ ++.. . .-.-|
T Consensus 261 q~lfVsGerli~dPa~E~~rVqdFLgLkr~it~----------khfyFnktKGFpClkK~e---~ss~----p--rCLgk 321 (360)
T KOG3704|consen 261 QILFVSGERLISDPAGELGRVQDFLGLKRVITD----------KHFYFNKTKGFPCLKKAE---DSSR----P--RCLGK 321 (360)
T ss_pred heEEecCceeecCcHHHHHHHHHHhcccceecc----------ceeEEecCCCceeeeccc---cCCC----c--ccccc
Confidence 899999999999999999999999998743221 1111222 22211 0000 0 01111
Q ss_pred cccCCCccCCcHHHHHHHHHHHHhHc----CCCCceeee
Q 019118 310 GEVGDWVNYLSPSMVKQLSLIMEEKL----DASGLSFKV 344 (346)
Q Consensus 310 G~vGdWk~~ft~e~~~~~~~~~~e~l----~~~gl~f~~ 344 (346)
.-|.=.-+..++.++++.+.+++-= +-+|-.|.|
T Consensus 322 -sKgr~hp~idp~~i~rLrefyrpfN~kFyq~tG~dF~W 359 (360)
T KOG3704|consen 322 -SKGRTHPHIDPEVIRRLREFYRPFNLKFYQMTGQDFGW 359 (360)
T ss_pred -ccCCCCCCCCHHHHHHHHHHhcchhhhHHHhhccccCC
Confidence 1244456789999999999887632 235666655
No 8
>KOG3703 consensus Heparan sulfate N-deacetylase/N-sulfotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00043 Score=68.70 Aligned_cols=95 Identities=19% Similarity=0.221 Sum_probs=66.3
Q ss_pred CCCeEEEEeeCCcceeehhhhhhhhhccCCC---------CCCC-HHHHHHHhhccccccCchHHHHHHHHHhhcCCCCe
Q 019118 167 NNIKIVYICRNPFDTFISSWHFLNKLRSQGL---------PEIS-LEEAFKMYCDGVIGFGPFWEHMLGYWNESLKRPNN 236 (346)
Q Consensus 167 ~~~K~I~ivRdPrDv~vS~~~~~~~~~~~~~---------~~~~-~~~~~~~f~~g~~~~g~~~~hv~~~w~~~~~~~~~ 236 (346)
|.+|+|-|.-||-|.+.|+|.|.+.....-+ ..++ -...+...-+-.+..|-|..|+..|.... ...+
T Consensus 686 P~AKIvtILinPadRAYSWyQHqraH~DpvAl~~~fyeVIsas~~aps~lk~lq~RClvpG~Ya~HlerWL~y~--~~~Q 763 (873)
T KOG3703|consen 686 PHAKIVTILINPADRAYSWYQHQRAHEDPVALNYSFYEVISASSSAPSALKALQNRCLVPGWYATHLERWLTYF--PAQQ 763 (873)
T ss_pred CcceEEEEEeChHHhhhHHHHHHhhcCCcceecceeEEEEecCCCCcHHHHHHHHhccCcchHHHHHHHHHHhC--Cccc
Confidence 6799999999999999999999876432210 0001 11111111111123455667888876653 3458
Q ss_pred EEEEecccccccHHHHHHHHHHHhCCC
Q 019118 237 VLFLKYDDMKQDIVSNLKKLASFLGFP 263 (346)
Q Consensus 237 vl~l~YEDL~~dp~~~l~rI~~FLg~~ 263 (346)
+++|.=++|..||..++..|-.|||+.
T Consensus 764 lliiDg~qLr~~Pa~vm~~~qkfLgv~ 790 (873)
T KOG3703|consen 764 LLIIDGQQLRTNPATVMNELQKFLGVT 790 (873)
T ss_pred EEEEccHHhccCcHHHHHHHHHHhCCC
Confidence 999999999999999999999999994
No 9
>KOG3922 consensus Sulfotransferases [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.052 Score=50.57 Aligned_cols=99 Identities=18% Similarity=0.368 Sum_probs=59.3
Q ss_pred CEEEecCCCccchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcCCCCCcccceecccccCCChhhhh-----hCCCCCeE
Q 019118 76 DIILASIPKSGTTWMKALSFAIINRKNFPIISDHHGHPHPLLTSNPHDLVPFLEYKLYANNQIPELS-----QIADEPRV 150 (346)
Q Consensus 76 DV~i~SyPKSGTTWl~~il~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~P~lE~~~~~~~~~~~~~-----~~~~~pr~ 150 (346)
-|+--=-||||+|=...|+.-|.....+.. ...+.+.-.+-+-.. +....+. ..+ .|-+
T Consensus 80 vViyNRVpKtGStTf~niaydL~ekn~F~v-----------lh~nvtkn~~vlsl~----dQ~qfvknIssw~e~-~P~~ 143 (361)
T KOG3922|consen 80 VVIYNRVPKTGSTTFVNIAYDLSEKNGFHV-----------LHINVTKNETVLSLP----DQQQFVKNISSWTEM-KPAL 143 (361)
T ss_pred EEEEecCCCccchhHHHHHHHHHhccCceE-----------EEeeccccceeeccH----HHHHHHHhhcccccc-Ccce
Confidence 455667899999999999888876554432 111222111111110 1111122 224 7899
Q ss_pred EEecCCCcccCCCcCCCCCeEEEEeeCCcceeehhhhhhhh
Q 019118 151 FATHIPFASLNLLPSMNNIKIVYICRNPFDTFISSWHFLNK 191 (346)
Q Consensus 151 iktHl~~~~lp~~~~~~~~K~I~ivRdPrDv~vS~~~~~~~ 191 (346)
+.-|..+--..+ +--++.-+|-|+|||.+.++|+|+|.+-
T Consensus 144 yhgHV~FldFsk-Fgi~~PIYINvIRdPveRllS~yyflRf 183 (361)
T KOG3922|consen 144 YHGHVAFLDFSK-FGIARPIYINVIRDPVERLLSYYYFLRF 183 (361)
T ss_pred eeeeeeeeehhh-hCCCCceEEeeeccHHHHHHhHhhhhcc
Confidence 999988632221 1123467888999999999999998763
No 10
>PF03567 Sulfotransfer_2: Sulfotransferase family; InterPro: IPR005331 This entry consists of a number of carbohydrate sulphotransferases that transfer sulphate to carbohydrate groups in glycoproteins and glycolipids. These include: Carbohydrate sulphotransferases 8 and 9, which transfer sulphate to position 4 of non-reducing N-acetylgalactosamine (GalNAc) residues in both N-glycans and O-glycans []. They function in the biosynthesis of glycoprotein hormones lutropin and thyrotropin, by mediating sulphation of their carbohydrate structures. Carbohydrate sulphotransferase 10, which transfers sulphate to position 3 of the terminal glucuronic acid in both protein- and lipid-linked oligosaccharides []. It directs the biosynthesis of the HNK-1 carbohydrate structure, a sulphated glucuronyl-lactosaminyl residue carried by many neural recognition molecules, which is involved in cell interactions during ontogenetic development and in synaptic plasticity in the adult. Carbohydrate sulphotransferases 11 - 13, which catalyze the transfer of sulphate to position 4 of the GalNAc residue of chondroitin []. Chondroitin sulphate constitutes the predominant proteoglycan present in cartilage and is distributed on the surfaces of many cells and extracellular matrices. Some, thought not all, of these enzymes also transfer sulphate to dermatan. Carbohydrate sulphotransferase D4ST1, which transfers sulphate to position 4 of the GalNAc residue of dermatan sulphate []. Heparan sulphate 2-O-sulphotransferase (HS2ST). Heparan sulphate (HS) is a co-receptor for a number of growth factors, morphogens, and adhesion proteins. HS biosynthetic modifications may determine the strength and outcome of HS-ligand interactions. Mice that lack HS2ST undergo developmental failure only after midgestation,the most dramatic effect being the complete failure of kidney development []. Heparan-sulphate 6-O-sulphotransferase (HS6ST), which catalyses the transfer of sulphate from adenosine 3'-phosphate, 5'-phosphosulphate to the 6th position of the N -sulphoglucosamine residue in heparan sulphate []. Chondroitin 6-sulphotransferase catalyses the transfer of sulphate to position 6 of the N-acetylgalactosamine residue of chondroitin []. ; GO: 0008146 sulfotransferase activity, 0016021 integral to membrane; PDB: 3F5F_A.
Probab=93.22 E-value=0.077 Score=47.70 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=18.7
Q ss_pred CCCEEEecCCCccchHHHHHHHHHHh
Q 019118 74 DTDIILASIPKSGTTWMKALSFAIIN 99 (346)
Q Consensus 74 ~~DV~i~SyPKSGTTWl~~il~~i~~ 99 (346)
...|+.+--||||.|=++.++..+..
T Consensus 8 ~~~i~f~~ipK~g~Ts~~~~l~~~~~ 33 (253)
T PF03567_consen 8 KHKIIFCHIPKTGGTSLKSILRRLYG 33 (253)
T ss_dssp --EEEE---SSSSHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCHHHHHHHHHHHHHhh
Confidence 45678899999999999999998876
No 11
>PF06990 Gal-3-0_sulfotr: Galactose-3-O-sulfotransferase ; InterPro: IPR009729 This family consists of several mammalian galactose-3-O-sulphotransferase proteins. Gal-3-O-sulphotransferase is thought to play a critical role in 3'-sulphation of N-acetyllactosamine in both O- and N-glycans [].; GO: 0001733 galactosylceramide sulfotransferase activity, 0009058 biosynthetic process, 0005794 Golgi apparatus, 0016021 integral to membrane
Probab=92.91 E-value=0.26 Score=48.61 Aligned_cols=124 Identities=18% Similarity=0.215 Sum_probs=68.1
Q ss_pred CccCCCCEEEecCCCccchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcCCCCCcccceecccccCCChhhhhhCCCCCe
Q 019118 70 FKAKDTDIILASIPKSGTTWMKALSFAIINRKNFPIISDHHGHPHPLLTSNPHDLVPFLEYKLYANNQIPELSQIADEPR 149 (346)
Q Consensus 70 f~~r~~DV~i~SyPKSGTTWl~~il~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~P~lE~~~~~~~~~~~~~~~~~~pr 149 (346)
=+|+.+=|||=| .|||+|=++.|+.......+... . .|... ...-..|..-... .......-. ..-
T Consensus 63 C~P~~nIvFlKT-HKTgSSTv~nIL~Rfg~~~nL~~-----a--lP~~~-~~~~~~P~~f~~~----~v~~~~~~~-~~n 128 (402)
T PF06990_consen 63 CQPKTNIVFLKT-HKTGSSTVQNILFRFGEKHNLTF-----A--LPRGG-RNQFGYPAPFNAR----FVEGYPPGG-RFN 128 (402)
T ss_pred ccccceEEEEec-CCcccHHHHHHHHHHHHHcCCEE-----e--cCCCC-CCCCCCCCcCCcc----ccccCCCCC-Cce
Confidence 345555555555 59999999999988764433322 0 12110 1111222210000 011111113 567
Q ss_pred EEEecCCCccc-CCCcCCCCCeEEEEeeCCcceeehhhhhhhhhccC--CCCCCCHHHHHH
Q 019118 150 VFATHIPFASL-NLLPSMNNIKIVYICRNPFDTFISSWHFLNKLRSQ--GLPEISLEEAFK 207 (346)
Q Consensus 150 ~iktHl~~~~l-p~~~~~~~~K~I~ivRdPrDv~vS~~~~~~~~~~~--~~~~~~~~~~~~ 207 (346)
++..|+.|+.- -..+..+++++|-|+|||...+.|.|+|+...... .....++++|++
T Consensus 129 Il~~H~rfn~~~~~~lmP~dt~yiTILRdP~~~feS~f~Yy~~~~~~~~~~~~~~l~~FL~ 189 (402)
T PF06990_consen 129 ILCHHMRFNRPEVRKLMPPDTKYITILRDPVSHFESSFNYYKRYAPAFRKAPNNSLEEFLE 189 (402)
T ss_pred EEeehhccCHHHHHHhCCCCCeEEEEEcCHHHHHHhHHHHhhccchhhhcCCcchHHHHHh
Confidence 88999998631 11222357899999999999999999998753221 112223666665
No 12
>KOG4157 consensus beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=88.68 E-value=0.3 Score=48.05 Aligned_cols=207 Identities=16% Similarity=0.181 Sum_probs=110.5
Q ss_pred hcCccCCCCEEEecCCCccchHHHHHHHHHHhc--CCCCCCCCCCCCCCCCCcCCCCCcccceecccccCCChhhhhhCC
Q 019118 68 KHFKAKDTDIILASIPKSGTTWMKALSFAIINR--KNFPIISDHHGHPHPLLTSNPHDLVPFLEYKLYANNQIPELSQIA 145 (346)
Q Consensus 68 ~~f~~r~~DV~i~SyPKSGTTWl~~il~~i~~~--~~~~~~~~~~~~~~~l~~~~~~~~~P~lE~~~~~~~~~~~~~~~~ 145 (346)
..+.|-..-+-+.|+|+.|+||++.++..+... +..- .+ ..+ .+...+ .|. ....-.
T Consensus 198 ~~~~p~ss~~~~st~~~~~~t~~~~~~~tat~~~t~s~y-----~~--g~~----~~~~~~-~~~---------n~~~~~ 256 (418)
T KOG4157|consen 198 RSSLPSSTAVPLSSFPGLGNTWARYLIQQATGFLTGSIY-----KD--GGL----LKTGFP-GER---------NHVCNS 256 (418)
T ss_pred cccCCCCCcccceeeeecccceeeeeeeceeeEeeeeEE-----ec--ccc----cccccc-ccc---------cccccc
Confidence 356666666999999999999999887765422 1000 00 000 000000 000 001111
Q ss_pred CCCeEEEecCCCcccCCCcCCCCCeEEEEeeCCcceeehhhhhhhhhccCCCCCCCHHHH-HHHhhccccccCchHHHHH
Q 019118 146 DEPRVFATHIPFASLNLLPSMNNIKIVYICRNPFDTFISSWHFLNKLRSQGLPEISLEEA-FKMYCDGVIGFGPFWEHML 224 (346)
Q Consensus 146 ~~pr~iktHl~~~~lp~~~~~~~~K~I~ivRdPrDv~vS~~~~~~~~~~~~~~~~~~~~~-~~~f~~g~~~~g~~~~hv~ 224 (346)
..+.+++|...... .......|.++|+|.=.++..+.+.............+... +..+..+ ..-+|-.|..
T Consensus 257 -~~~~~~~~~~~~~v----~~~~~~~i~ll~~~~~~~~~~~~r~~~~~~~~~~~~~y~~~~~~~~~~~--~~~~~ss~~~ 329 (418)
T KOG4157|consen 257 -NVSLVKTGEWGSVV----GAVFSAAILLLRDPEKAYIAEFNRKSGGHIGFASPKSYKSKKWPQFVSN--KLSGWSSHTL 329 (418)
T ss_pred -eeeeeecceeccee----eecchhheeeeccccccccccccccccccccccccchhccccccccccC--CCCCccccch
Confidence 45567788765411 12345677888888765555444322111100000111100 1111111 1112335666
Q ss_pred HHHHhhcCCCCeEEEEecccccccHHHHHHHHHHHhCCCCChHhhhhhHHHHHHhhcCHHHHhhhhhhcCCCCccCCCCC
Q 019118 225 GYWNESLKRPNNVLFLKYDDMKQDIVSNLKKLASFLGFPFSPEEEKQGVIQDIAKLCSFEEMKKLDVNKNGKSIKDIENK 304 (346)
Q Consensus 225 ~~w~~~~~~~~~vl~l~YEDL~~dp~~~l~rI~~FLg~~~~~~~~~~~~l~~iv~~~Sf~~mk~~~~~~~~~~~~~~~~~ 304 (346)
+ |.. ...+++.++||+|..++...+..+..|+|++..+.. .- | .. .....
T Consensus 330 ~-w~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l-----~-------~~---------~~~e~ 379 (418)
T KOG4157|consen 330 S-WAR---KGTGSLVVFYDDLVHPTVAPLRLIVDFLQHPVPESL-----ML-----C-------DI---------MQKEG 379 (418)
T ss_pred h-hhc---ccccceeEEeecccccccccccccccccCccccccc-----cC-----C-------cc---------ccccC
Confidence 7 443 223669999999999999999999999997766543 00 0 00 01234
Q ss_pred CeeeccccCCCccCCcHHHHHHHHHHHH
Q 019118 305 YLFRKGEVGDWVNYLSPSMVKQLSLIME 332 (346)
Q Consensus 305 ~f~RkG~vGdWk~~ft~e~~~~~~~~~~ 332 (346)
.|.|.|....=.+-+++.+.+.++...+
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (418)
T KOG4157|consen 380 IFGRRGKRLLSPDPLTDSMLDEVKGLRR 407 (418)
T ss_pred cccccCCccCCCCcchhhhhhhhhcccc
Confidence 5666677677778888888888775543
No 13
>COG4424 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.34 E-value=3 Score=37.06 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=39.4
Q ss_pred eEEEEecccccccHHHHHHHHHHHhCCCCChHhhhhhHHHHHHhhcCHHHHhh
Q 019118 236 NVLFLKYDDMKQDIVSNLKKLASFLGFPFSPEEEKQGVIQDIAKLCSFEEMKK 288 (346)
Q Consensus 236 ~vl~l~YEDL~~dp~~~l~rI~~FLg~~~~~~~~~~~~l~~iv~~~Sf~~mk~ 288 (346)
.-+-+-||.|-+||...+..+|+.||++....- .-.+++..+..|-+.|..
T Consensus 188 ep~riaYe~Lsadp~aava~~~ealgv~~p~a~--~p~~a~qad~~s~eWv~R 238 (250)
T COG4424 188 EPIRIAYEVLSADPTAAVASVLEALGVDPPLAP--APMLARQADQRSDEWVDR 238 (250)
T ss_pred cHHHHhHHHHccCcHHHHHHHHHHhCCCCCCCc--CchHHHhhhhhhHHHHHH
Confidence 345677999999999999999999999865432 222666677777777776
No 14
>KOG4651 consensus Chondroitin 6-sulfotransferase and related sulfotransferases [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=56.88 E-value=4.9 Score=38.51 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=26.7
Q ss_pred ccCCCCEEEecCCCccchHHHHHHHHHHhcCCC
Q 019118 71 KAKDTDIILASIPKSGTTWMKALSFAIINRKNF 103 (346)
Q Consensus 71 ~~r~~DV~i~SyPKSGTTWl~~il~~i~~~~~~ 103 (346)
.+-.-.++.|.-|||++|-...|...|.+.+.|
T Consensus 78 vapk~kl~~C~I~Ksms~l~~nimc~L~n~~~y 110 (324)
T KOG4651|consen 78 VAPKYKLIYCEIPKSMSTLWTNIMCLLYNETQY 110 (324)
T ss_pred eCCCCceEEEeecccHhhhhhhhheeEeChhhh
Confidence 345567889999999999999998888766554
No 15
>COG4424 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.48 E-value=14 Score=32.86 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=20.8
Q ss_pred CEEEecCCCccchHHHHHHHHHHhcC
Q 019118 76 DIILASIPKSGTTWMKALSFAIINRK 101 (346)
Q Consensus 76 DV~i~SyPKSGTTWl~~il~~i~~~~ 101 (346)
-.+|++-||||+|||-.+|..--..|
T Consensus 7 ~Ylilt~pRSGStlLckllaatG~sG 32 (250)
T COG4424 7 PYLILTTPRSGSTLLCKLLAATGCSG 32 (250)
T ss_pred ceeEecCCCCcchHHHHHHHhcCCCC
Confidence 46899999999999999887654433
No 16
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=36.73 E-value=31 Score=22.47 Aligned_cols=37 Identities=30% Similarity=0.328 Sum_probs=24.6
Q ss_pred cccccHHHHHHHHHHHhCCCCChHhhhhhHHHHHHhh
Q 019118 244 DMKQDIVSNLKKLASFLGFPFSPEEEKQGVIQDIAKL 280 (346)
Q Consensus 244 DL~~dp~~~l~rI~~FLg~~~~~~~~~~~~l~~iv~~ 280 (346)
||..-+..+++.||.-+|++-.....++.++.+|++.
T Consensus 1 eL~~~~~~eL~~iAk~lgI~~~~~~~K~eLI~~Il~~ 37 (43)
T PF07498_consen 1 ELKSMTLSELREIAKELGIEGYSKMRKQELIFAILKA 37 (43)
T ss_dssp HHHCS-HHHHHHHHHCTT-TTGCCS-HHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHcCCCCCCcCCHHHHHHHHHHH
Confidence 4666788999999999999754444445567777654
No 17
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=34.83 E-value=66 Score=29.41 Aligned_cols=53 Identities=15% Similarity=0.338 Sum_probs=38.3
Q ss_pred cccccCchHHHHHHHHHhhcCCCCeEEEEecccccc-----cHHHHHHHHHHHhCCCCCh
Q 019118 212 GVIGFGPFWEHMLGYWNESLKRPNNVLFLKYDDMKQ-----DIVSNLKKLASFLGFPFSP 266 (346)
Q Consensus 212 g~~~~g~~~~hv~~~w~~~~~~~~~vl~l~YEDL~~-----dp~~~l~rI~~FLg~~~~~ 266 (346)
|.+..|.+..-+.+|..++.. .-.+++|.||.-. +-...+.+.+++||+.++.
T Consensus 12 G~LHlG~~~~al~n~l~ar~~--~G~~ilRieDtd~~r~~~~~~~~i~~dL~wlGl~~d~ 69 (239)
T cd00808 12 GFLHIGGARTALFNYLFARKH--GGKFILRIEDTDQERSVPEAEEAILEALKWLGLDWDE 69 (239)
T ss_pred CcccHHHHHHHHHHHHHHHHc--CCeEEEEECcCCCCCCchHHHHHHHHHHHHcCCCCCc
Confidence 445567777778888877532 3589999999722 2346677778899999986
No 18
>COG1158 Rho Transcription termination factor [Transcription]
Probab=33.26 E-value=40 Score=32.54 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=0.0
Q ss_pred EEecCCCcc-chHHHHHHHHHHhcCC
Q 019118 78 ILASIPKSG-TTWMKALSFAIINRKN 102 (346)
Q Consensus 78 ~i~SyPKSG-TTWl~~il~~i~~~~~ 102 (346)
+||+.||+| ||.||.|..+|..+..
T Consensus 177 LIVAPPkaGKT~lLq~IA~aIt~N~P 202 (422)
T COG1158 177 LIVAPPKAGKTTLLQNIANAITTNHP 202 (422)
T ss_pred eEecCCCCCchHHHHHHHHHHhcCCC
No 19
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=30.78 E-value=37 Score=27.38 Aligned_cols=20 Identities=45% Similarity=0.534 Sum_probs=15.9
Q ss_pred EEEecCCCcc-chHHHHHHHH
Q 019118 77 IILASIPKSG-TTWMKALSFA 96 (346)
Q Consensus 77 V~i~SyPKSG-TTWl~~il~~ 96 (346)
|+|++.|-|| |||.+++...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 7899999999 7777776543
No 20
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=25.97 E-value=2e+02 Score=19.93 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=21.4
Q ss_pred CeEEEEecccccccHHHHHHHHHHHhCC
Q 019118 235 NNVLFLKYDDMKQDIVSNLKKLASFLGF 262 (346)
Q Consensus 235 ~~vl~l~YEDL~~dp~~~l~rI~~FLg~ 262 (346)
.-++.|-+||...++..-+++-++||.-
T Consensus 15 dG~~siE~ED~~~~~~~G~~~a~~~lr~ 42 (55)
T PF07582_consen 15 DGWLSIEHEDALMDPEEGAREAAAFLRK 42 (55)
T ss_dssp -SEEEE---STTTSHHHHHHHHHHHHHT
T ss_pred CceEEEEeecCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999998743
No 21
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=25.94 E-value=64 Score=29.17 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=17.4
Q ss_pred EEEecCCCcc-chHHHHHHHHHHhc
Q 019118 77 IILASIPKSG-TTWMKALSFAIINR 100 (346)
Q Consensus 77 V~i~SyPKSG-TTWl~~il~~i~~~ 100 (346)
|++.+||-|| ||..+++...|-.+
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHh
Confidence 7899999999 55666666655443
No 22
>PF01498 HTH_Tnp_Tc3_2: Transposase; InterPro: IPR002492 Transposase proteins are necessary for efficient DNA transposition. This family includes the amino-terminal region of Tc1, Tc1A, Tc1B and Tc2B transposases of Caenorhabditis elegans. The region encompasses the specific DNA binding and second DNA recognition domains as well as an amino-terminal region of the catalytic domain of Tc3 as described in []. Tc3 is a member of the Tc1/mariner family of transposable elements. This entry also includes histone-lysine N-methyltransferase SETMAR, which is a SET domain and mariner transposase fusion gene-containing protein. This histone methyltransferase has sequence-specific DNA-binding activity and recognises the 19-mer core of the 5'-terminal inverted repeats (TIRs) of the Hsmar1 element. This protein has DNA nicking activity, and has in vivo end joining activity and may mediate genomic integration of foreign DNA [, , , ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated, 0015074 DNA integration; PDB: 3K9K_B 3F2K_B 3K9J_B 1U78_A.
Probab=24.43 E-value=1.3e+02 Score=21.34 Aligned_cols=62 Identities=21% Similarity=0.251 Sum_probs=30.9
Q ss_pred cccccHHHHHHHHHHHh---CCCCChHhhhhhHHHHHHhhcCHHHHhhhhhhcCCCCccCCCCCCeeeccccCCCccCCc
Q 019118 244 DMKQDIVSNLKKLASFL---GFPFSPEEEKQGVIQDIAKLCSFEEMKKLDVNKNGKSIKDIENKYLFRKGEVGDWVNYLS 320 (346)
Q Consensus 244 DL~~dp~~~l~rI~~FL---g~~~~~~~~~~~~l~~iv~~~Sf~~mk~~~~~~~~~~~~~~~~~~f~RkG~vGdWk~~ft 320 (346)
...+||....+.|..-| |..++... |..++... | + ++..-.|+-.||
T Consensus 7 ~v~~~p~~s~~~i~~~l~~~~~~vS~~T-----I~r~L~~~-------------g-----------~-~~~~~~~kP~Ls 56 (72)
T PF01498_consen 7 MVRRNPRISAREIAQELQEAGISVSKST-----IRRRLREA-------------G-----------L-KKRKARKKPFLS 56 (72)
T ss_dssp ---------HHHHHHHT---T--S-HHH-----HHHHHHHT-------------------------E-EEETTEEEES--
T ss_pred HHHHCCCCCHHHHHHHHHHccCCcCHHH-----HHHHHHHc-------------C-----------c-cccccccCCCCC
Confidence 45578889999999999 99999887 77765421 1 1 235667788899
Q ss_pred HHHHHHHHHHHHhHc
Q 019118 321 PSMVKQLSLIMEEKL 335 (346)
Q Consensus 321 ~e~~~~~~~~~~e~l 335 (346)
+++.+.=-+++.+.+
T Consensus 57 ~~~~~~Rl~fA~~h~ 71 (72)
T PF01498_consen 57 PKHKKKRLEFAKEHL 71 (72)
T ss_dssp HHHHHHHHHHH----
T ss_pred HHHHHHHHHHhhhcc
Confidence 988776666666554
No 23
>COG3551 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.24 E-value=2e+02 Score=27.37 Aligned_cols=77 Identities=14% Similarity=0.007 Sum_probs=48.7
Q ss_pred CeEEEEeeCCcceeehhhhhhhhhccCCCCCCCHHHHHHHhhccccccCchHHHHH--HHHHhhcCCCCeEEEEeccccc
Q 019118 169 IKIVYICRNPFDTFISSWHFLNKLRSQGLPEISLEEAFKMYCDGVIGFGPFWEHML--GYWNESLKRPNNVLFLKYDDMK 246 (346)
Q Consensus 169 ~K~I~ivRdPrDv~vS~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~g~~~~hv~--~~w~~~~~~~~~vl~l~YEDL~ 246 (346)
.-+|.-.|+|..|+-|....-. ...+.-+- -|..|.. .+|..+. .-.++.||-+.
T Consensus 135 ~~~iv~~r~plsVA~sl~rrD~---------~~leksli----------Lw~~h~~~~~~~~~h~----~~~~~~yd~~l 191 (402)
T COG3551 135 TYIIVHRRIPLSVASSLRRRDM---------TELEKSLI----------LWPYHGNKQRIREQHV----EEGADIYDVHL 191 (402)
T ss_pred eeEEeecCCcHHHHHHHHhhhh---------hhchHHHH----------HHHHhhHHHHHHHHhc----cchhhhHHHHH
Confidence 3456667888888777644221 11221111 1444543 3466543 23567899999
Q ss_pred ccHHHHHHHHHHHhCCCCChHh
Q 019118 247 QDIVSNLKKLASFLGFPFSPEE 268 (346)
Q Consensus 247 ~dp~~~l~rI~~FLg~~~~~~~ 268 (346)
.|+..+.-++++-+|+++.+.-
T Consensus 192 ~d~rqh~dr~~~~~~~~v~~a~ 213 (402)
T COG3551 192 SDLRQHPDRLVAAVNQRVGRAP 213 (402)
T ss_pred hhHHhChHHHHHHhcCcCCccc
Confidence 9999999999999999876543
No 24
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=23.78 E-value=86 Score=22.50 Aligned_cols=28 Identities=43% Similarity=0.629 Sum_probs=19.2
Q ss_pred HHHHHHHhCCCCChHhhhhhHHHHHHhhcCHHH
Q 019118 253 LKKLASFLGFPFSPEEEKQGVIQDIAKLCSFEE 285 (346)
Q Consensus 253 l~rI~~FLg~~~~~~~~~~~~l~~iv~~~Sf~~ 285 (346)
+.+|.+.||++++.++ +.+++++..|+.
T Consensus 8 ~~~i~~~lG~~i~~~~-----i~~~L~~lg~~~ 35 (70)
T PF03484_consen 8 LDKINKLLGIDISPEE-----IIKILKRLGFKV 35 (70)
T ss_dssp HHHHHHHHTS---HHH-----HHHHHHHTT-EE
T ss_pred HHHHHHHhCCCCCHHH-----HHHHHHHCCCEE
Confidence 4678889999999998 888888776643
No 25
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=22.97 E-value=93 Score=25.70 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=17.2
Q ss_pred EEEecCCCccchHH-HHHHHHHHhcC
Q 019118 77 IILASIPKSGTTWM-KALSFAIINRK 101 (346)
Q Consensus 77 V~i~SyPKSGTTWl-~~il~~i~~~~ 101 (346)
|.|+++..||=|.+ +.|+..+..++
T Consensus 3 v~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 3 VQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 67999999996655 45555555444
Done!