BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019119
(346 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 194 bits (493), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 98/187 (52%), Positives = 119/187 (63%), Gaps = 3/187 (1%)
Query: 2 EELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTSSDYSNPGDNNTAEDS 61
EELG FRV G L NEY WN VANVLFL++PAGVGFSY+NTSSD GDN TA DS
Sbjct: 74 EELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDS 133
Query: 62 YTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTILSKNTSKTIINLKGIAIGNAWI 121
Y FL WFERFP YK RDF+I GESYAGHYVP+L + L + +INLKG +GN I
Sbjct: 134 YAFLAKWFERFPHYKYRDFYIAGESYAGHYVPEL--SQLVHRSKNPVINLKGFMVGNGLI 191
Query: 122 DDNLCTKGMFDFFWTHALNSDETNAAINKYCDFATG-QLSTSCDQYQTQGVREYGQIDLY 180
DD G F+F+W H + SD+T + + C + S +CD E G ID+Y
Sbjct: 192 DDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATAEQGNIDMY 251
Query: 181 NVYAPLC 187
++Y P+C
Sbjct: 252 SLYTPVC 258
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 194 bits (492), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 98/187 (52%), Positives = 119/187 (63%), Gaps = 3/187 (1%)
Query: 2 EELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTSSDYSNPGDNNTAEDS 61
EELG FRV G L NEY WN VANVLFL++PAGVGFSY+NTSSD GDN TA DS
Sbjct: 69 EELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDS 128
Query: 62 YTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTILSKNTSKTIINLKGIAIGNAWI 121
Y FL WFERFP YK RDF+I GESYAGHYVP+L + L + +INLKG +GN I
Sbjct: 129 YAFLAKWFERFPHYKYRDFYIAGESYAGHYVPEL--SQLVHRSKNPVINLKGFMVGNGLI 186
Query: 122 DDNLCTKGMFDFFWTHALNSDETNAAINKYCDFATG-QLSTSCDQYQTQGVREYGQIDLY 180
DD G F+F+W H + SD+T + + C + S +CD E G ID+Y
Sbjct: 187 DDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATAEQGNIDMY 246
Query: 181 NVYAPLC 187
++Y P+C
Sbjct: 247 SLYTPVC 253
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 194 bits (492), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 98/187 (52%), Positives = 119/187 (63%), Gaps = 3/187 (1%)
Query: 2 EELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTSSDYSNPGDNNTAEDS 61
EELG FRV G L NEY WN VANVLFL++PAGVGFSY+NTSSD GDN TA DS
Sbjct: 70 EELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDS 129
Query: 62 YTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTILSKNTSKTIINLKGIAIGNAWI 121
Y FL WFERFP YK RDF+I GESYAGHYVP+L + L + +INLKG +GN I
Sbjct: 130 YAFLAKWFERFPHYKYRDFYIAGESYAGHYVPEL--SQLVHRSKNPVINLKGFMVGNGLI 187
Query: 122 DDNLCTKGMFDFFWTHALNSDETNAAINKYCDFATG-QLSTSCDQYQTQGVREYGQIDLY 180
DD G F+F+W H + SD+T + + C + S +CD E G ID+Y
Sbjct: 188 DDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATAEQGNIDMY 247
Query: 181 NVYAPLC 187
++Y P+C
Sbjct: 248 SLYTPVC 254
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 194 bits (492), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 98/187 (52%), Positives = 119/187 (63%), Gaps = 3/187 (1%)
Query: 2 EELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTSSDYSNPGDNNTAEDS 61
EELG FRV G L NEY WN VANVLFL++PAGVGFSY+NTSSD GDN TA DS
Sbjct: 74 EELGAFRVKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDS 133
Query: 62 YTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTILSKNTSKTIINLKGIAIGNAWI 121
Y FL WFERFP YK RDF+I GESYAGHYVP+L + L + +INLKG +GN I
Sbjct: 134 YAFLAKWFERFPHYKYRDFYIAGESYAGHYVPEL--SQLVHRSKNPVINLKGFMVGNGLI 191
Query: 122 DDNLCTKGMFDFFWTHALNSDETNAAINKYCDFATG-QLSTSCDQYQTQGVREYGQIDLY 180
DD G F+F+W H + SD+T + + C + S +CD E G ID+Y
Sbjct: 192 DDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATAEQGNIDMY 251
Query: 181 NVYAPLC 187
++Y P+C
Sbjct: 252 SLYTPVC 258
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/194 (45%), Positives = 121/194 (62%), Gaps = 4/194 (2%)
Query: 1 MEELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTSSDYSNPGDNNTAED 60
M+ELG FRV+++G++L NEYAWN AN+LF E+PAGVGFSYSNTSSD S GD+ A+D
Sbjct: 74 MQELGAFRVHTNGESLLLNEYAWNKAANILFAESPAGVGFSYSNTSSDLSM-GDDKMAQD 132
Query: 61 SYTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTILSKNTSKTIINLKGIAIGNAW 120
+YTFLV WFERFP Y R+F+I GES GH++PQL+ + + IN +G+ + +
Sbjct: 133 TYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVVYRNRNNSPFINFQGLLVSSGL 190
Query: 121 IDDNLCTKGMFDFFWTHALNSDETNAAINKYCDFATGQLST-SCDQYQTQGVREYGQIDL 179
+D+ GMF+ +W H L SDET + K C + T C + + + E G I+
Sbjct: 191 TNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHPTPECTEVWNKALAEQGNINP 250
Query: 180 YNVYAPLCKSSAPP 193
Y +Y P C P
Sbjct: 251 YTIYTPTCDREPSP 264
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 106/150 (70%), Gaps = 8/150 (5%)
Query: 203 YDPCSDKYVNSYLNLAEVQAALHAKHT-----NWSTCSDLT---WTDSPSTVLPTIQQLI 254
YDPC+++Y +Y N +VQ ALHA T W+TCSD W D+P ++LP ++LI
Sbjct: 4 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 63
Query: 255 ASGIRVWIYSGDTDGRVPVTSSRYSINALNLPVETAWYPWYADGEVGGYVLGYKGVIFTT 314
A+G+R+W++SGDTD VP+T++RYSI AL LP T+WYPWY D EVGG+ YKG+ +
Sbjct: 64 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVS 123
Query: 315 VRGAGHLVPTYQPQRALIMISSFLEGKLPP 344
VRGAGH VP ++P++AL++ FL+GK P
Sbjct: 124 VRGAGHEVPLHRPRQALVLFQYFLQGKPMP 153
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 164 bits (416), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 106/150 (70%), Gaps = 8/150 (5%)
Query: 203 YDPCSDKYVNSYLNLAEVQAALHAKHT-----NWSTCSDLT---WTDSPSTVLPTIQQLI 254
YDPC+++Y +Y N +VQ ALHA T W+TCSD W D+P ++LP ++LI
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 255 ASGIRVWIYSGDTDGRVPVTSSRYSINALNLPVETAWYPWYADGEVGGYVLGYKGVIFTT 314
A+G+R+W++SGDTD VP+T++RYSI AL LP T+WYPWY D EVGG+ YKG+ +
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVS 121
Query: 315 VRGAGHLVPTYQPQRALIMISSFLEGKLPP 344
VRGAGH VP ++P++AL++ FL+GK P
Sbjct: 122 VRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 164 bits (416), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 106/150 (70%), Gaps = 8/150 (5%)
Query: 203 YDPCSDKYVNSYLNLAEVQAALHAKHT-----NWSTCSDLT---WTDSPSTVLPTIQQLI 254
YDPC+++Y +Y N +VQ ALHA T W+TCSD W D+P ++LP ++LI
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 255 ASGIRVWIYSGDTDGRVPVTSSRYSINALNLPVETAWYPWYADGEVGGYVLGYKGVIFTT 314
A+G+R+W++SGDTD VP+T++RYSI AL LP T+WYPWY D EVGG+ YKG+ +
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVS 121
Query: 315 VRGAGHLVPTYQPQRALIMISSFLEGKLPP 344
VRGAGH VP ++P++AL++ FL+GK P
Sbjct: 122 VRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 164 bits (416), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 106/150 (70%), Gaps = 8/150 (5%)
Query: 203 YDPCSDKYVNSYLNLAEVQAALHAKHT-----NWSTCSDLT---WTDSPSTVLPTIQQLI 254
YDPC+++Y +Y N +VQ ALHA T W+TCSD W D+P ++LP ++LI
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 255 ASGIRVWIYSGDTDGRVPVTSSRYSINALNLPVETAWYPWYADGEVGGYVLGYKGVIFTT 314
A+G+R+W++SGDTD VP+T++RYSI AL LP T+WYPWY D EVGG+ YKG+ +
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVS 121
Query: 315 VRGAGHLVPTYQPQRALIMISSFLEGKLPP 344
VRGAGH VP ++P++AL++ FL+GK P
Sbjct: 122 VRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 116/392 (29%), Positives = 183/392 (46%), Gaps = 59/392 (15%)
Query: 1 MEELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTSSDYSNPGDNNTAED 60
+ E GPF V DG TL N Y+WN +ANVL+LE+PAGVGFSYS+ +N D A+
Sbjct: 67 LTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYATN--DTEVAQS 124
Query: 61 SYTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTILSKNTSKTIINLKGIAIGNAW 120
++ L ++F FP+YKN F+TGESYAG Y+P LA ++ + +NL+G+A+GN
Sbjct: 125 NFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPS----MNLQGLAVGNGL 180
Query: 121 IDDNLCTKGMFDFFWTHAL------NSDETNAAINKYCDFATGQLSTSCDQYQTQGVREY 174
+ F + H L +S +T+ C+F + C + R
Sbjct: 181 SSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNK-DLECVTNLQEVARIV 239
Query: 175 GQ--IDLYNVYAPLCKSSAPPP-------------------------------PTAGVIR 201
G +++YN+YAP C P + +R
Sbjct: 240 GNSGLNIYNLYAP-CAGGVPSHFRYEKDTVVVQDLGNIFTRLPLKRMWHQALLRSGDKVR 298
Query: 202 EYDPCSDKYVNS-YLNLAEVQAALHAKHT--NWSTCS---DLTWTDSPSTVLPTIQQLIA 255
PC++ S YLN V+ AL+ W C+ +L + ++ +L++
Sbjct: 299 MDPPCTNTTAASTYLNNPYVRKALNIPEQLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLS 358
Query: 256 S-GIRVWIYSGDTDGRVPVTSSRYSINALNLPVETAWYPW---YADG--EVGGYVLGYKG 309
S ++ +Y+GD D + +++LN +E PW Y D ++ G+V +
Sbjct: 359 SQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEFSH 418
Query: 310 VIFTTVRGAGHLVPTYQPQRALIMISSFLEGK 341
+ F T++GAGH+VPT +P A M S FL +
Sbjct: 419 IAFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQ 450
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 145 bits (365), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 103/155 (66%), Gaps = 11/155 (7%)
Query: 203 YDPCSDKYVNSYLNLAEVQAALHAKHTN-----WSTCSDLT---WTDSPSTVLPTIQQLI 254
YDPC+ +YLNL EVQ ALHA + W+ CS+ W + +LP ++LI
Sbjct: 4 YDPCAVFNSINYLNLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYRELI 63
Query: 255 ASGIRVWIYSGDTDGRVPVTSSRYSINALNLPVETAWYPWY---ADGEVGGYVLGYKGVI 311
+G+RVW+YSGDTD VPV+S+R S+ AL LPV+T+WYPWY + EVGG+ + Y+G+
Sbjct: 64 QAGLRVWVYSGDTDSVVPVSSTRRSLAALELPVKTSWYPWYMAPTEREVGGWSVQYEGLT 123
Query: 312 FTTVRGAGHLVPTYQPQRALIMISSFLEGKLPPSS 346
+ TVRGAGHLVP ++P +A ++ FL+G+ P+
Sbjct: 124 YVTVRGAGHLVPVHRPAQAFLLFKQFLKGEPMPAE 158
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 107/200 (53%), Gaps = 16/200 (8%)
Query: 1 MEELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTSSDYSNPGDNNTAED 60
+ E GPF V DG TL N Y+WN +ANVL+LE+PAGVGFSYS+ +N D A+
Sbjct: 69 LTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYATN--DTEVAQS 126
Query: 61 SYTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTILSKNTSKTIINLKGIAIGNAW 120
++ L ++F FP+YKN F+TGESYAG Y+P LA ++ + +NL+G+A+GN
Sbjct: 127 NFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPS----MNLQGLAVGNGL 182
Query: 121 IDDNLCTKGMFDFFWTHAL------NSDETNAAINKYCDFATGQLSTSCDQYQTQGVREY 174
+ F + H L +S +T+ C+F + C + R
Sbjct: 183 SSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNK-DLECVTNLQEVARIV 241
Query: 175 GQ--IDLYNVYAPLCKSSAP 192
G +++YN+YAP C P
Sbjct: 242 GNSGLNIYNLYAP-CAGGVP 260
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 108/384 (28%), Positives = 159/384 (41%), Gaps = 77/384 (20%)
Query: 3 ELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTSSDYSNPGDNNT---AE 59
ELGP + D K + N Y+WN+ A V+FL+ P VGFSYS +S G +NT +
Sbjct: 65 ELGPSSIGPDLKPI-GNPYSWNSNATVIFLDQPVNVGFSYSGSS------GVSNTVAAGK 117
Query: 60 DSYTFLVNWFERFPQYKNR--DFFITGESYAGHYVPQLAYTILSKNTSKTIINLKGIAIG 117
D Y FL +F++FP+Y N+ DF I GESYAGHY+P A ILS NL + IG
Sbjct: 118 DVYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRN--FNLTSVLIG 175
Query: 118 NAWIDDNLCTKGMFDFFWTHALNS--------DETNAAINKYCDFATGQLSTSCDQYQTQ 169
N D ++++ A E +A+ + G L SC Y +Q
Sbjct: 176 NGLTD----PLTQYNYYEPMACGEGGEPSVLPSEECSAMEDSLERCLG-LIESC--YDSQ 228
Query: 170 GVREYGQIDLYNVYAPLCKSSAPPPPTAGVIREYDPCSD-----------KYVNSYLNLA 218
V +Y C ++ P YD D + ++ YLN
Sbjct: 229 SVWSCVPATIY------CNNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQD 282
Query: 219 EVQAALHAKHTNWSTC------SDLTWTDSPSTVLPTIQQLIASGIRVWIYSGDTDGRVP 272
V+ A+ A+ ++ +C + L D + L+ + + +Y+GD D
Sbjct: 283 YVKEAVGAEVDHYESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKD---- 338
Query: 273 VTSSRYSINALNLPVETAWYPWYAD----------------GEVGGYVLGYKGVIFTTVR 316
+ N L T PW D EV G V YK + V
Sbjct: 339 -----FICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSYKHFTYLRVF 393
Query: 317 GAGHLVPTYQPQRALIMISSFLEG 340
GH+VP P+ AL M++ ++ G
Sbjct: 394 NGGHMVPFDVPENALSMVNEWIHG 417
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 107/373 (28%), Positives = 157/373 (42%), Gaps = 61/373 (16%)
Query: 3 ELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTSSDYSNPGDNNTAEDS- 61
E GPFRVNSDGK LY NE +W + ++LF++ P G GFS + D N ED
Sbjct: 88 ESGPFRVNSDGK-LYLNEGSWISKGDLLFIDQPTGTGFSVE-QNKDEGKIDKNKFDEDLE 145
Query: 62 ------YTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTILSKNTSKTI----INL 111
FL N+F+ FP+ R ++GESYAG Y+P A IL+ N I +L
Sbjct: 146 DVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDL 205
Query: 112 KGIAIGNAWIDDNLCTKGMFDFFWTHALNSDETNAAI----NKYCDFATGQLSTSCDQ-- 165
K + IGN WID N + F L DE+N N + + S S D+
Sbjct: 206 KALLIGNGWIDPNTQSLSYLPFAMEKKL-IDESNPNFKHLTNAHENCQNLINSASTDEAA 264
Query: 166 ---YQ------------TQGVREYGQIDLYNVYAPLCKSSAPPPPTAGVIREYDPCSDKY 210
YQ T+ + G D N+Y K S P+ G+ P +
Sbjct: 265 HFSYQECENILNLLLSYTRESSQKGTADCLNMYNFNLKDSY---PSCGMNW---PKDISF 318
Query: 211 VNSYLNLAEVQAALHA---KHTNWSTCSDLTWTDSPSTV-LPTIQ---QLIASGIRVWIY 263
V+ + + V +LH K +W C++ T + + P+I L+ SGI + ++
Sbjct: 319 VSKFFSTPGVIDSLHLDSDKIDHWKECTNSVGTKLSNPISKPSIHLLPGLLESGIEIVLF 378
Query: 264 SGDTDGRVPVTSSRYSINALN------LPVETAWYPWYADG-------EVGGYVLGYKGV 310
+GD D +I+ L + + W E GYV + +
Sbjct: 379 NGDKDLICNNKGVLDTIDNLKWGGIKGFSDDAVSFDWIHKSKSTDDSEEFSGYVKYDRNL 438
Query: 311 IFTTVRGAGHLVP 323
F +V A H+VP
Sbjct: 439 TFVSVYNASHMVP 451
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 106/383 (27%), Positives = 157/383 (40%), Gaps = 77/383 (20%)
Query: 4 LGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTSSDYSNPGDNNT---AED 60
LGP + D K + N Y+WN+ A V+FL+ P VGFSYS +S G +NT +D
Sbjct: 66 LGPSSIGPDLKPI-GNPYSWNSNATVIFLDQPVNVGFSYSGSS------GVSNTVAAGKD 118
Query: 61 SYTFLVNWFERFPQYKNR--DFFITGESYAGHYVPQLAYTILSKNTSKTIINLKGIAIGN 118
Y FL +F++FP+Y N+ DF I G SYAGHY+P A ILS NL + IGN
Sbjct: 119 VYNFLELFFDQFPEYVNKGQDFHIAGASYAGHYIPVFASEILSHKDRN--FNLTSVLIGN 176
Query: 119 AWIDDNLCTKGMFDFFWTHALNS--------DETNAAINKYCDFATGQLSTSCDQYQTQG 170
D ++++ A E +A+ + G L SC Y +Q
Sbjct: 177 GLTD----PLTQYNYYEPMACGEGGEPSVLPSEECSAMEDSLERCLG-LIESC--YDSQS 229
Query: 171 VREYGQIDLYNVYAPLCKSSAPPPPTAGVIREYDPCSD-----------KYVNSYLNLAE 219
V +Y C ++ P YD D + ++ YLN
Sbjct: 230 VWSCVPATIY------CNNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQDY 283
Query: 220 VQAALHAKHTNWSTC------SDLTWTDSPSTVLPTIQQLIASGIRVWIYSGDTDGRVPV 273
V+ A+ A+ ++ +C + L D + L+ + + +Y+GD D
Sbjct: 284 VKEAVGAEVDHYESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKD----- 338
Query: 274 TSSRYSINALNLPVETAWYPWYAD----------------GEVGGYVLGYKGVIFTTVRG 317
+ N L T PW D EV G V YK + V
Sbjct: 339 ----FICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSYKHFTYLRVFN 394
Query: 318 AGHLVPTYQPQRALIMISSFLEG 340
GH+VP P+ AL M++ ++ G
Sbjct: 395 GGHMVPFDVPENALSMVNEWIHG 417
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 12/149 (8%)
Query: 205 PCSDKYVNS-YLNLAEVQAALHAKHT--NWSTCS---DLTWTDSPSTVLPTIQQLIAS-G 257
PC++ S YLN V+ AL+ W C+ +L + ++ +L++S
Sbjct: 4 PCTNTTAASTYLNNPYVRKALNIPEQLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSSQK 63
Query: 258 IRVWIYSGDTDGRVPVTSSRYSINALNLPVETAWYPW---YADG--EVGGYVLGYKGVIF 312
++ +Y+GD D + +++LN +E PW Y D ++ G+V + + F
Sbjct: 64 YQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEFSHIAF 123
Query: 313 TTVRGAGHLVPTYQPQRALIMISSFLEGK 341
T++GAGH+VPT +P A M S FL +
Sbjct: 124 LTIKGAGHMVPTDKPLAAFTMFSRFLNKQ 152
>pdb|1E33|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant P426l
Length = 489
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 236 DLTWTDSPSTVLPTIQQLIASGIRVWIYSGDTDGRVPV---TSSRYSINALNLPVETAWY 292
DL PS+ P + QL A G+R TD VPV T SR ++ LPV Y
Sbjct: 17 DLGCYGHPSSTTPNLDQLAAGGLRF------TDFYVPVSLXTPSRAALLTGRLPVRMGMY 70
Query: 293 P 293
P
Sbjct: 71 P 71
>pdb|1N2K|A Chain A, Crystal Structure Of A Covalent Intermediate Of Endogenous
Human Arylsulfatase A
pdb|1N2L|A Chain A, Crystal Structure Of A Covalent Intermediate Of Endogenous
Human Arylsulfatase A
pdb|1AUK|A Chain A, Human Arylsulfatase A
Length = 489
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 236 DLTWTDSPSTVLPTIQQLIASGIRVWIYSGDTDGRVPV---TSSRYSINALNLPVETAWY 292
DL PS+ P + QL A G+R TD VPV T SR ++ LPV Y
Sbjct: 17 DLGCYGHPSSTTPNLDQLAAGGLRF------TDFYVPVSLXTPSRAALLTGRLPVRMGMY 70
Query: 293 P 293
P
Sbjct: 71 P 71
>pdb|1E3C|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69s Soaked
In Synthetic Substrate
Length = 489
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 236 DLTWTDSPSTVLPTIQQLIASGIRVWIYSGDTDGRVPV---TSSRYSINALNLPVETAWY 292
DL PS+ P + QL A G+R TD VPV T SR ++ LPV Y
Sbjct: 17 DLGCYGHPSSTTPNLDQLAAGGLRF------TDFYVPVSLSTPSRAALLTGRLPVRMGMY 70
Query: 293 P 293
P
Sbjct: 71 P 71
>pdb|1E1Z|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69s
Length = 489
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 236 DLTWTDSPSTVLPTIQQLIASGIRVWIYSGDTDGRVPV---TSSRYSINALNLPVETAWY 292
DL PS+ P + QL A G+R TD VPV T SR ++ LPV Y
Sbjct: 17 DLGCYGHPSSTTPNLDQLAAGGLRF------TDFYVPVSLSTPSRAALLTGRLPVRMGMY 70
Query: 293 P 293
P
Sbjct: 71 P 71
>pdb|1E2S|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69a
Length = 489
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 236 DLTWTDSPSTVLPTIQQLIASGIRVWIYSGDTDGRVPV---TSSRYSINALNLPVETAWY 292
DL PS+ P + QL A G+R TD VPV T SR ++ LPV Y
Sbjct: 17 DLGCYGHPSSTTPNLDQLAAGGLRF------TDFYVPVSLATPSRAALLTGRLPVRMGMY 70
Query: 293 P 293
P
Sbjct: 71 P 71
>pdb|1MJT|A Chain A, Crystal Structure Of Sanos, A Bacterial Nitric Oxide
Synthase Oxygenase Protein, In Complex With Nad+ And
Seitu
pdb|1MJT|B Chain B, Crystal Structure Of Sanos, A Bacterial Nitric Oxide
Synthase Oxygenase Protein, In Complex With Nad+ And
Seitu
Length = 347
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 72/200 (36%), Gaps = 39/200 (19%)
Query: 119 AWIDDNLCTKGMFDFFWTHALNSDETNAAINKYCDFATGQLSTSCDQYQTQGVREYGQID 178
AW + N C +F W +LN + ++ +S + TQ E G++
Sbjct: 56 AWRNSNRCIGRLF---WD-SLNVIDARDVTDE------ASFLSSITYHITQATNE-GKLK 104
Query: 179 LY-NVYAPLCKSSAPPPPTAGVIR--EYDPCSDKYVNSYLNLAEVQAALHAKHTNWSTCS 235
Y +YAP P +IR YD C D AE + A H W
Sbjct: 105 PYITIYAP---KDGPKIFNNQLIRYAGYDNCGDP--------AEKEVTRLANHLGWKGKG 153
Query: 236 DLTWTDSPSTVLPTIQQLIASGIRVWIYSGDTDGRVPVTSSRY-SINALNLPVETAWYPW 294
+ VLP I QL ++ + Y VP+ + Y + LNL W
Sbjct: 154 ------TNFDVLPLIYQLPNESVKFYEYPTSLIKEVPIEHNHYPKLRKLNL-------KW 200
Query: 295 YADGEVGGYVLGYKGVIFTT 314
YA + L G+++ T
Sbjct: 201 YAVPIISNMDLKIGGIVYPT 220
>pdb|1DQY|A Chain A, Crystal Structure Of Antigen 85c From Mycobacterium
Tuberculosis With Diethyl Phosphate Inhibitor
Length = 283
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 195 PTAGVIREYDPCSDKYVNSYLNLAEVQAALHAKHTNWSTCSDLTWTDSPSTVLPTIQQLI 254
P A + + S+ + + + LA + + ++ W SD W + V I +L+
Sbjct: 143 PYAASLSGFLNPSESWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMV--QIPRLV 200
Query: 255 ASGIRVWIYSGD 266
A+ R+W+Y G+
Sbjct: 201 ANNTRIWVYCGN 212
>pdb|1VA5|A Chain A, Antigen 85c With Octylthioglucoside In Active Site
pdb|1VA5|B Chain B, Antigen 85c With Octylthioglucoside In Active Site
Length = 303
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 195 PTAGVIREYDPCSDKYVNSYLNLAEVQAALHAKHTNWSTCSDLTWTDSPSTVLPTIQQLI 254
P A + + S+ + + + LA + + ++ W SD W + V I +L+
Sbjct: 143 PYAASLSGFLNPSEGWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMV--QIPRLV 200
Query: 255 ASGIRVWIYSGD 266
A+ R+W+Y G+
Sbjct: 201 ANNTRIWVYCGN 212
>pdb|1DQZ|A Chain A, Crystal Structure Of Antigen 85c From Mycobacterium
Tuberculosis
pdb|1DQZ|B Chain B, Crystal Structure Of Antigen 85c From Mycobacterium
Tuberculosis
Length = 280
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 195 PTAGVIREYDPCSDKYVNSYLNLAEVQAALHAKHTNWSTCSDLTWTDSPSTVLPTIQQLI 254
P A + + S+ + + + LA + + ++ W SD W + V I +L+
Sbjct: 140 PYAASLSGFLNPSESWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMV--QIPRLV 197
Query: 255 ASGIRVWIYSGD 266
A+ R+W+Y G+
Sbjct: 198 ANNTRIWVYCGN 209
>pdb|3HRH|A Chain A, Crystal Structure Of Antigen 85c And Glycerol
pdb|3HRH|B Chain B, Crystal Structure Of Antigen 85c And Glycerol
Length = 303
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 195 PTAGVIREYDPCSDKYVNSYLNLAEVQAALHAKHTNWSTCSDLTWTDSPSTVLPTIQQLI 254
P A + + S+ + + + LA + + ++ W SD W + V I +L+
Sbjct: 143 PYAASLSGFLNPSEGWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMV--QIPRLV 200
Query: 255 ASGIRVWIYSGD 266
A+ R+W+Y G+
Sbjct: 201 ANNTRIWVYCGN 212
>pdb|1G0U|L Chain L, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|Z Chain Z, A Gated Channel Into The Proteasome Core Particle
pdb|2ZCY|L Chain L, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|Z Chain Z, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|L Chain L, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|Z Chain Z, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|L Chain L, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|Z Chain Z, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|4B4T|6 Chain 6, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 241
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 271 VPVTSSRYSINALNLPVETAWYPWYADGEVGGYVLGYKGVIFTTVRG 317
+ +S YS A N P+E + P+ G+ GG +LG G F + G
Sbjct: 1 MATIASEYSSEASNTPIEHQFNPY---GDNGGTILGIAGEDFAVLAG 44
>pdb|1F0P|A Chain A, Mycobacterium Tuberculosis Antigen 85b With Trehalose
Length = 285
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 213 SYLNLAEVQAALHAKHTNWSTCSDLTWT-DSPSTVLPTIQQLIASGIRVWIYSGD 266
S + LA A + W SD W + P+ +P +L+A+ R+W+Y G+
Sbjct: 162 SLIGLAMGDAGGYKAADMWGPSSDPAWERNDPTQQIP---KLVANNTRLWVYCGN 213
>pdb|1F0N|A Chain A, Mycobacterium Tuberculosis Antigen 85b
Length = 285
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 213 SYLNLAEVQAALHAKHTNWSTCSDLTWT-DSPSTVLPTIQQLIASGIRVWIYSGD 266
S + LA A + W SD W + P+ +P +L+A+ R+W+Y G+
Sbjct: 162 SLIGLAMGDAGGYKAADMWGPSSDPAWERNDPTQQIP---KLVANNTRLWVYCGN 213
>pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
pdb|2XTI|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
Length = 437
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 18/83 (21%)
Query: 235 SDLTWTDSPSTVLPTIQQLIASGIRVWIYSGDTDGRVPVTSSRYSINALNLPVETAWYPW 294
D T T+S ++P + +++ +R+W + S N+ ++ Y W
Sbjct: 343 KDNTLTESVDLLMPGVGEIVGGSMRIWKF------------DELSKAFKNVEIDPKPYYW 390
Query: 295 YADGEV------GGYVLGYKGVI 311
Y D + GGY LG + I
Sbjct: 391 YLDQRLYGTCPHGGYGLGLERFI 413
>pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
pdb|2XGT|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
Length = 435
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 18/83 (21%)
Query: 235 SDLTWTDSPSTVLPTIQQLIASGIRVWIYSGDTDGRVPVTSSRYSINALNLPVETAWYPW 294
D T T+S ++P + +++ +R+W + S N+ ++ Y W
Sbjct: 341 QDNTLTESVDLLMPGVGEIVGGSMRIWKF------------DELSKAFKNVEIDPKPYYW 388
Query: 295 YADGEV------GGYVLGYKGVI 311
Y D + GGY LG + I
Sbjct: 389 YLDQRLYGTCPHGGYGLGLERFI 411
>pdb|1XOV|A Chain A, The Crystal Structure Of The Listeria Monocytogenes
Bacteriophage Psa Endolysin Plypsa
Length = 326
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 255 ASGIRVWIYSGDTDGR-VPVTSSRYSINALNLP 286
+G+ VW Y+GD GR + V S AL LP
Sbjct: 97 GTGVEVWYYAGDEKGRKLAVEISAKMAKALGLP 129
>pdb|4DIQ|A Chain A, Crystal Structure Of Human No66
pdb|4DIQ|B Chain B, Crystal Structure Of Human No66
Length = 489
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 210 YVNSYLNLAEVQAALHAKHTNWSTCSDLTWTDSPSTVLPTIQQ 252
+ +++ AE Q +H+ H ST TW D +LP Q
Sbjct: 240 FPRGFIHQAECQDGVHSLHLTLSTYQRNTWGDFLEAILPLAVQ 282
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,736,490
Number of Sequences: 62578
Number of extensions: 528300
Number of successful extensions: 1169
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1111
Number of HSP's gapped (non-prelim): 49
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)