Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>019120
MERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLHPNAGSASSATAPSQASGATAAP
SSTGQPASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDR
NSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFL
EADRRETARQEAAAKRVHPTLHLPVNSQPSAQVGGSLTNTATGALVAPQTSAVISASSGG
GLSLFSTPSSAPASSMSSSLFATPATSASPSSLFGSGVSPQMSSSSLFAASTLSLFGSTV
PSFGSTTSAGASLFSTPFASGAPSGSGASFGAASKSTRPKTRTARR

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  019120
        (346 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2115055 - symbol:AT4G37130 species:3702 "Arabi...   588  1.8e-60   2


>TAIR|locus:2115055 [details] [associations]
            symbol:AT4G37130 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005635 "nuclear envelope" evidence=IDA]
            GO:GO:0005635 EMBL:CP002687 KO:K14307 EMBL:AY093072 EMBL:BT008879
            IPI:IPI00536094 RefSeq:NP_195430.2 UniGene:At.31273
            ProteinModelPortal:Q8RWH9 SMR:Q8RWH9 STRING:Q8RWH9 PRIDE:Q8RWH9
            EnsemblPlants:AT4G37130.1 GeneID:829867 KEGG:ath:AT4G37130
            TAIR:At4g37130 InParanoid:Q8RWH9 OMA:QQTNSIF PhylomeDB:Q8RWH9
            ProtClustDB:CLSN2680308 Genevestigator:Q8RWH9 Uniprot:Q8RWH9
        Length = 513

 Score = 588 (212.0 bits), Expect = 1.8e-60, Sum P(2) = 1.8e-60
 Identities = 129/236 (54%), Positives = 149/236 (63%)

Query:     1 MERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLH---PNXXXXXXXXXXXXXXXXX 57
             M+RQKA L E M V KDMLRN EIAVRSFMML+PRF H                      
Sbjct:   171 MDRQKAVLHELMIVAKDMLRNAEIAVRSFMMLQPRFPHWKQGGGVVSVGSQPSQGQGTNP 230

Query:    58 XXXXXXXXPASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWXXXXXXXXXXD 117
                      A ++ V V DFYRG+PKKP+AFL QTV RFEKYL E RQW          D
Sbjct:   231 APASSGQQQAVTTTVQVSDFYRGIPKKPTAFLLQTVVRFEKYLNECRQWVEELEQLLALD 290

Query:   118 PDRNXXXXXXXXXXXXPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSD 177
              D+             P+V+SNVH FFVHVAAK ESIHQY+E+M+T+YLADQRRRG+  D
Sbjct:   291 SDK--YSRHASLLESLPKVMSNVHDFFVHVAAKVESIHQYIESMRTSYLADQRRRGECHD 348

Query:   178 PFLEADRRETARQEAAAKRVHPTLHLPVNS---QPSAQVGGSLTNTAT-GALVAPQ 229
             PFLEADRRETA+QEAAAKRVHPTLHLP ++   QPS QV G + ++AT G    PQ
Sbjct:   349 PFLEADRRETAKQEAAAKRVHPTLHLPASTTSTQPSTQVAGLIASSATPGGSNPPQ 404

 Score = 49 (22.3 bits), Expect = 1.8e-60, Sum P(2) = 1.8e-60
 Identities = 15/44 (34%), Positives = 17/44 (38%)

Query:   303 FGSTTSAGASLFSTXXXXXXXXXXXXXXXXXXKSTRPKTRTARR 346
             FG TT    SL                     KS+RPK+RT RR
Sbjct:   473 FGQTTP---SLTMPSQFGGATPGSGASFGSMTKSSRPKSRTTRR 513


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.129   0.372    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      346       213   0.00084  112 3  11 22  0.49    32
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  553 (59 KB)
  Total size of DFA:  138 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.59u 0.13s 15.72t   Elapsed:  00:00:01
  Total cpu time:  15.59u 0.13s 15.72t   Elapsed:  00:00:01
  Start:  Fri May 10 22:09:10 2013   End:  Fri May 10 22:09:11 2013

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