BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019120
         (346 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8R332|NUPL1_MOUSE Nucleoporin p58/p45 OS=Mus musculus GN=Nupl1 PE=1 SV=1
          Length = 587

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 8/114 (7%)

Query: 85  PSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFF 144
           P+ + +  V +FE  L ++RQ IEELE  +     + S+SH +   Q L   +  ++  F
Sbjct: 330 PADYFRILVQQFEVQLQQYRQQIEELENHL---ATQASNSHITP--QDLSMAMQKIYQTF 384

Query: 145 VHVAAKAESIHQYVETMKTAYLADQRR-RGDGSDPFLEADRRETARQEAAAKRV 197
           V +AA+ +SIH+ V+ +K  YL  ++   GD  D F EA RR  A++   A RV
Sbjct: 385 VALAAQLQSIHENVKVLKEQYLGYRKMFLGDAVDVF-EA-RRTEAKKWQNAPRV 436


>sp|P70581|NUPL1_RAT Nucleoporin p58/p45 OS=Rattus norvegicus GN=Nupl1 PE=1 SV=1
          Length = 585

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 8/114 (7%)

Query: 85  PSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFF 144
           P+ + +  V +FE  L ++RQ IEELE  +    +   +SH +   Q L   +  ++  F
Sbjct: 328 PADYFRVLVQQFEVQLQQYRQQIEELENHLATQAN---NSHITP--QDLSMAMQKIYQTF 382

Query: 145 VHVAAKAESIHQYVETMKTAYLADQRR-RGDGSDPFLEADRRETARQEAAAKRV 197
           V +AA+ +SIH+ V+ +K  YL+ ++   GD  D F EA RR  A++   A RV
Sbjct: 383 VALAAQLQSIHENVKVLKEQYLSYRKMFLGDAGDVF-EA-RRTEAKKWQNAPRV 434


>sp|Q9BVL2|NUPL1_HUMAN Nucleoporin p58/p45 OS=Homo sapiens GN=NUPL1 PE=1 SV=1
          Length = 599

 Score = 55.1 bits (131), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 8/114 (7%)

Query: 85  PSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFF 144
           P+ + +  V +FE  L ++RQ IEELE  +    +   +SH +   Q L   +  ++  F
Sbjct: 342 PADYFRILVQQFEVQLQQYRQQIEELENHLATQAN---NSHITP--QDLSMAMQKIYQTF 396

Query: 145 VHVAAKAESIHQYVETMKTAYLADQRR-RGDGSDPFLEADRRETARQEAAAKRV 197
           V +AA+ +SIH+ V+ +K  YL  ++   GD  D F    RR  A++     RV
Sbjct: 397 VALAAQLQSIHENVKVLKEQYLGYRKMFLGDAVDVF--ETRRAEAKKWQNTPRV 448


>sp|P84752|PERA_ALOVR Peroxidase A (Fragments) OS=Aloe vera PE=1 SV=1
          Length = 361

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 32/41 (78%), Gaps = 2/41 (4%)

Query: 124 SHGSSLL--QSLPQVISNVHIFFVHVAAKAESIHQYVETMK 162
           +HG +L+      +V+SNVH FFVHVAAK ESIHQY+E+M+
Sbjct: 66  THGLTLICISWALRVMSNVHDFFVHVAAKVESIHQYIESMR 106


>sp|P49793|NUP98_RAT Nuclear pore complex protein Nup98-Nup96 OS=Rattus norvegicus
           GN=Nup98 PE=1 SV=2
          Length = 1816

 Score = 36.6 bits (83), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 23/132 (17%)

Query: 230 TSAVISASSGGGLSLFSTPSSAPASSMSSSLFATPATSASP-----------SSLFG--- 275
           TSA  S+++ GGL  F    + P     +S F+ PATS S            +SLFG   
Sbjct: 39  TSAFGSSNNTGGL--FGNSQTKPGGLFGTSSFSQPATSTSTGFGFGTSTGTSNSLFGTAN 96

Query: 276 SGVSPQMSSSSLFAASTLSLFGSTVPSFGSTTSAGASLFSTPFASGAPSG--SGASFGAA 333
           +G S   S ++ FA +  + FG    +FG++TS+G  LF T   +  P G  SG+ FG +
Sbjct: 97  TGTSLFSSQNNAFAQNKPTGFG----NFGTSTSSGG-LFGTTNTTSNPFGNTSGSLFGPS 151

Query: 334 SKSTRPKTRTAR 345
           S +  P   T +
Sbjct: 152 SFTAAPTGTTIK 163


>sp|P52948|NUP98_HUMAN Nuclear pore complex protein Nup98-Nup96 OS=Homo sapiens GN=NUP98
           PE=1 SV=4
          Length = 1817

 Score = 35.4 bits (80), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 23/132 (17%)

Query: 230 TSAVISASSGGGLSLFSTPSSAPASSMSSSLFATPATSASP-----------SSLFG--- 275
           TSA  S+++ GGL  F    + P     +S F+ PATS S            ++LFG   
Sbjct: 39  TSAFGSSNNTGGL--FGNSQTKPGGLFGTSSFSQPATSTSTGFGFGTSTGTANTLFGTAS 96

Query: 276 SGVSPQMSSSSLFAASTLSLFGSTVPSFGSTTSAGASLFSTPFASGAPSG--SGASFGAA 333
           +G S   S ++ FA +  + FG    +FG++TS+G  LF T   +  P G  SG+ FG +
Sbjct: 97  TGTSLFSSQNNAFAQNKPTGFG----NFGTSTSSGG-LFGTTNTTSNPFGSTSGSLFGPS 151

Query: 334 SKSTRPKTRTAR 345
           S +  P   T +
Sbjct: 152 SFTAAPTGTTIK 163


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.123    0.335 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,555,784
Number of Sequences: 539616
Number of extensions: 4739489
Number of successful extensions: 34290
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 696
Number of HSP's that attempted gapping in prelim test: 23858
Number of HSP's gapped (non-prelim): 7036
length of query: 346
length of database: 191,569,459
effective HSP length: 118
effective length of query: 228
effective length of database: 127,894,771
effective search space: 29160007788
effective search space used: 29160007788
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)