Query 019120
Match_columns 346
No_of_seqs 81 out of 83
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 06:51:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019120.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019120hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3091 Nuclear pore complex, 96.2 0.014 3E-07 60.9 7.5 8 268-275 47-54 (508)
2 PF13634 Nucleoporin_FG: Nucle 96.1 0.036 7.7E-07 46.9 8.3 70 258-335 23-95 (113)
3 KOG0774 Transcription factor P 95.6 0.21 4.6E-06 49.2 12.4 74 93-171 117-191 (334)
4 PF13634 Nucleoporin_FG: Nucle 95.5 0.056 1.2E-06 45.7 7.3 66 242-315 23-91 (113)
5 KOG3091 Nuclear pore complex, 95.1 0.077 1.7E-06 55.6 8.1 26 268-301 33-58 (508)
6 PF06013 WXG100: Proteins of 1 94.1 0.79 1.7E-05 34.1 9.6 78 87-168 7-84 (86)
7 PF10392 COG5: Golgi transport 93.3 0.73 1.6E-05 39.7 9.1 31 85-115 10-50 (132)
8 PF14644 DUF4456: Domain of un 92.2 1.5 3.2E-05 40.7 10.1 96 88-192 41-141 (208)
9 PF00435 Spectrin: Spectrin re 91.2 5.1 0.00011 30.2 10.7 66 92-168 2-67 (105)
10 PF03961 DUF342: Protein of un 88.6 4 8.6E-05 41.6 10.5 79 87-168 330-408 (451)
11 PF14644 DUF4456: Domain of un 88.3 3.6 7.9E-05 38.1 9.2 49 158-206 75-124 (208)
12 PF13256 DUF4047: Domain of un 85.8 9.1 0.0002 33.9 9.6 72 89-171 25-100 (125)
13 PF06103 DUF948: Bacterial pro 85.7 8.3 0.00018 30.8 8.8 64 88-163 16-79 (90)
14 KOG0811 SNARE protein PEP12/VA 85.6 2.4 5.3E-05 41.5 6.7 60 99-167 174-233 (269)
15 PRK04406 hypothetical protein; 85.1 2.9 6.3E-05 33.5 5.9 49 103-160 9-57 (75)
16 smart00150 SPEC Spectrin repea 84.3 15 0.00033 27.5 10.7 65 95-170 2-66 (101)
17 PRK13879 conjugal transfer pro 83.5 9.6 0.00021 37.1 9.7 38 72-117 28-71 (253)
18 KOG4603 TBP-1 interacting prot 83.4 10 0.00023 35.6 9.5 90 74-170 69-169 (201)
19 PF15035 Rootletin: Ciliary ro 83.0 32 0.00068 31.8 12.5 28 89-116 14-41 (182)
20 PF12210 Hrs_helical: Hepatocy 80.8 9.2 0.0002 32.5 7.5 49 98-147 2-51 (96)
21 PRK04325 hypothetical protein; 80.2 13 0.00029 29.6 7.9 46 107-161 11-56 (74)
22 PRK10963 hypothetical protein; 79.3 3.7 8.1E-05 38.3 5.2 64 93-165 39-104 (223)
23 PF07106 TBPIP: Tat binding pr 78.8 25 0.00054 31.1 10.0 60 90-156 78-137 (169)
24 TIGR02780 TrbJ_Ti P-type conju 78.1 19 0.0004 34.3 9.6 82 72-170 26-113 (246)
25 PF10458 Val_tRNA-synt_C: Valy 77.9 14 0.0003 28.4 7.1 65 89-162 2-66 (66)
26 smart00503 SynN Syntaxin N-ter 76.6 38 0.00082 27.3 10.0 67 89-164 6-72 (117)
27 PF08700 Vps51: Vps51/Vps67; 76.1 7.9 0.00017 30.2 5.5 66 85-169 8-78 (87)
28 PRK00846 hypothetical protein; 75.8 9.8 0.00021 31.0 6.0 52 102-162 10-61 (77)
29 PF05055 DUF677: Protein of un 75.6 13 0.00028 37.5 8.1 30 89-118 293-322 (336)
30 PF10805 DUF2730: Protein of u 75.2 23 0.0005 29.8 8.3 67 91-164 35-101 (106)
31 PRK04863 mukB cell division pr 73.7 15 0.00033 43.6 9.1 92 78-169 429-533 (1486)
32 PF04799 Fzo_mitofusin: fzo-li 73.1 33 0.00072 31.8 9.5 61 87-167 109-169 (171)
33 PF14728 PHTB1_C: PTHB1 C-term 73.0 33 0.00071 35.1 10.3 64 95-163 218-282 (377)
34 PF02181 FH2: Formin Homology 72.6 37 0.00081 33.2 10.3 76 93-177 276-351 (370)
35 KOG3647 Predicted coiled-coil 72.4 15 0.00033 36.7 7.5 43 129-171 113-155 (338)
36 PRK02119 hypothetical protein; 71.6 35 0.00075 27.2 8.1 31 130-160 25-55 (73)
37 PF06120 Phage_HK97_TLTM: Tail 71.6 42 0.00092 33.6 10.5 72 88-170 38-109 (301)
38 PRK10884 SH3 domain-containing 71.5 68 0.0015 30.2 11.3 63 90-164 92-154 (206)
39 TIGR00383 corA magnesium Mg(2+ 71.0 47 0.001 31.6 10.4 29 88-116 139-167 (318)
40 cd00176 SPEC Spectrin repeats, 70.8 64 0.0014 27.2 10.9 26 93-118 2-27 (213)
41 TIGR03545 conserved hypothetic 70.7 24 0.00053 37.8 9.2 47 88-146 179-227 (555)
42 KOG2991 Splicing regulator [RN 70.2 23 0.0005 35.3 8.2 68 93-173 138-207 (330)
43 PF11172 DUF2959: Protein of u 69.9 69 0.0015 30.6 11.0 51 132-182 61-115 (201)
44 PF14723 SSFA2_C: Sperm-specif 69.8 14 0.0003 34.6 6.2 29 87-115 98-129 (179)
45 PF10168 Nup88: Nuclear pore c 69.7 23 0.0005 39.0 9.0 32 86-117 538-570 (717)
46 PF04136 Sec34: Sec34-like fam 69.5 47 0.001 29.7 9.5 60 94-169 3-62 (157)
47 PRK14139 heat shock protein Gr 69.4 26 0.00056 32.7 8.0 82 88-180 54-140 (185)
48 PF04156 IncA: IncA protein; 69.4 60 0.0013 28.9 10.1 25 91-115 88-112 (191)
49 PRK13182 racA polar chromosome 68.9 34 0.00074 31.4 8.6 63 92-165 86-148 (175)
50 PRK02793 phi X174 lysis protei 68.8 34 0.00074 27.1 7.5 31 130-160 24-54 (72)
51 PRK09039 hypothetical protein; 68.2 36 0.00077 34.1 9.3 31 88-118 43-73 (343)
52 PF08614 ATG16: Autophagy prot 67.8 49 0.0011 30.1 9.4 30 135-164 144-173 (194)
53 PRK14143 heat shock protein Gr 67.7 32 0.00069 33.2 8.5 80 89-179 90-177 (238)
54 PF01544 CorA: CorA-like Mg2+ 67.7 88 0.0019 28.7 11.1 29 87-115 114-142 (292)
55 PRK12718 flgL flagellar hook-a 67.3 24 0.00051 37.5 8.2 68 93-169 52-125 (510)
56 PF04156 IncA: IncA protein; 67.0 56 0.0012 29.1 9.4 24 92-115 82-105 (191)
57 PF04102 SlyX: SlyX; InterPro 66.8 34 0.00074 26.7 7.1 7 107-113 6-12 (69)
58 PF04380 BMFP: Membrane fusoge 66.5 66 0.0014 25.8 8.9 72 84-161 3-76 (79)
59 PF11559 ADIP: Afadin- and alp 66.3 45 0.00097 28.9 8.5 69 93-170 68-136 (151)
60 PRK14147 heat shock protein Gr 66.0 35 0.00075 31.3 8.0 81 88-179 40-125 (172)
61 PRK10920 putative uroporphyrin 65.9 58 0.0013 33.6 10.4 89 93-192 101-189 (390)
62 PF11336 DUF3138: Protein of u 65.9 22 0.00047 37.7 7.4 26 93-118 27-52 (514)
63 PRK11637 AmiB activator; Provi 65.8 44 0.00096 33.8 9.5 39 132-170 93-131 (428)
64 PF15188 CCDC-167: Coiled-coil 65.8 38 0.00083 28.2 7.5 27 91-117 5-31 (85)
65 PRK09039 hypothetical protein; 65.5 43 0.00094 33.5 9.3 68 98-174 137-209 (343)
66 PRK11546 zraP zinc resistance 65.1 61 0.0013 29.3 9.2 78 77-170 40-117 (143)
67 KOG3366 Mitochondrial F1F0-ATP 65.1 13 0.00029 34.5 5.1 73 75-164 55-127 (172)
68 TIGR03017 EpsF chain length de 65.0 95 0.0021 31.0 11.6 25 92-116 172-196 (444)
69 PF08172 CASP_C: CASP C termin 64.8 1.3E+02 0.0028 29.1 12.1 27 89-115 4-30 (248)
70 cd09237 V_ScBro1_like Protein- 64.8 19 0.00042 35.6 6.7 37 133-169 276-322 (356)
71 PF12325 TMF_TATA_bd: TATA ele 64.6 79 0.0017 27.6 9.6 76 86-174 18-93 (120)
72 PF15070 GOLGA2L5: Putative go 64.3 52 0.0011 35.8 10.1 94 86-179 348-461 (617)
73 PF07889 DUF1664: Protein of u 64.1 27 0.00059 30.8 6.7 63 90-164 42-104 (126)
74 PF09849 DUF2076: Uncharacteri 63.7 11 0.00023 36.6 4.5 28 88-115 45-72 (247)
75 PRK00736 hypothetical protein; 63.6 44 0.00095 26.2 7.1 31 130-160 21-51 (68)
76 PRK14155 heat shock protein Gr 63.6 48 0.001 31.4 8.7 82 87-179 34-126 (208)
77 cd00179 SynN Syntaxin N-termin 63.1 60 0.0013 27.5 8.5 67 87-156 2-69 (151)
78 TIGR02473 flagell_FliJ flagell 63.1 89 0.0019 26.0 9.5 38 133-170 66-103 (141)
79 PF10152 DUF2360: Predicted co 63.1 12 0.00025 33.3 4.3 33 86-118 9-41 (148)
80 KOG4719 Nuclear pore complex p 62.7 35 0.00076 39.1 8.7 93 226-331 938-1036(1053)
81 PF05524 PEP-utilisers_N: PEP- 62.5 31 0.00068 28.7 6.6 27 89-115 33-59 (123)
82 PF05700 BCAS2: Breast carcino 62.2 1E+02 0.0022 28.9 10.5 26 87-112 100-125 (221)
83 COG1340 Uncharacterized archae 61.4 58 0.0013 32.6 9.2 40 131-170 203-242 (294)
84 PRK11637 AmiB activator; Provi 61.3 51 0.0011 33.4 9.0 22 94-115 43-64 (428)
85 PF14942 Muted: Organelle biog 60.9 68 0.0015 28.8 8.7 36 132-167 56-91 (145)
86 PF07426 Dynactin_p22: Dynacti 60.6 59 0.0013 29.9 8.5 75 91-170 87-161 (174)
87 PRK12717 flgL flagellar hook-a 60.3 37 0.00081 35.9 8.1 69 93-170 52-126 (523)
88 smart00498 FH2 Formin Homology 60.3 89 0.0019 31.9 10.6 71 95-174 279-349 (432)
89 PF02520 DUF148: Domain of unk 60.1 23 0.00051 29.3 5.4 38 131-168 61-98 (113)
90 PF10475 DUF2450: Protein of u 59.9 65 0.0014 31.1 9.1 61 94-173 31-91 (291)
91 PRK06975 bifunctional uroporph 58.9 88 0.0019 34.0 10.8 50 143-192 425-474 (656)
92 PRK07720 fliJ flagellar biosyn 58.9 1.1E+02 0.0023 26.3 9.5 74 94-170 33-106 (146)
93 PRK05689 fliJ flagellar biosyn 58.8 1.2E+02 0.0025 26.0 9.8 37 134-170 70-106 (147)
94 PF01544 CorA: CorA-like Mg2+ 58.6 92 0.002 28.5 9.5 73 93-169 153-226 (292)
95 KOG0250 DNA repair protein RAD 58.6 54 0.0012 38.0 9.4 36 5-40 322-357 (1074)
96 COG3416 Uncharacterized protei 58.4 19 0.00041 34.8 5.1 31 88-118 45-75 (233)
97 PF00435 Spectrin: Spectrin re 58.2 68 0.0015 24.0 7.3 63 92-159 42-104 (105)
98 PF04102 SlyX: SlyX; InterPro 57.9 58 0.0012 25.4 6.9 25 91-115 4-28 (69)
99 PF06013 WXG100: Proteins of 1 57.7 32 0.00069 25.4 5.3 68 89-160 16-83 (86)
100 PF07445 priB_priC: Primosomal 57.6 16 0.00035 33.2 4.4 23 93-115 147-169 (173)
101 PF05335 DUF745: Protein of un 57.6 58 0.0013 30.4 8.0 26 90-115 66-91 (188)
102 PF07765 KIP1: KIP1-like prote 57.5 37 0.00081 27.7 5.9 62 84-150 11-72 (74)
103 PF09537 DUF2383: Domain of un 57.4 16 0.00035 29.7 3.9 55 92-155 32-86 (111)
104 PF04124 Dor1: Dor1-like famil 57.4 1E+02 0.0022 30.4 10.2 71 85-167 8-78 (338)
105 PF10234 Cluap1: Clusterin-ass 57.1 53 0.0011 32.4 8.0 70 106-187 159-232 (267)
106 PF10158 LOH1CR12: Tumour supp 56.9 1.4E+02 0.003 26.4 10.2 34 82-115 22-55 (131)
107 COG2900 SlyX Uncharacterized p 56.9 33 0.00071 27.9 5.4 33 130-162 24-56 (72)
108 PF10046 BLOC1_2: Biogenesis o 56.7 49 0.0011 27.4 6.7 9 153-161 84-92 (99)
109 PRK00295 hypothetical protein; 56.5 92 0.002 24.4 7.8 31 130-160 21-51 (68)
110 PF11887 DUF3407: Protein of u 56.4 36 0.00077 32.8 6.7 62 91-161 42-103 (267)
111 PF11932 DUF3450: Protein of u 56.3 1.8E+02 0.0039 27.4 11.8 26 90-115 41-66 (251)
112 TIGR00996 Mtu_fam_mce virulenc 55.3 43 0.00093 31.7 6.9 47 133-179 211-257 (291)
113 PRK08027 flgL flagellar hook-a 55.1 62 0.0013 31.8 8.2 68 94-170 53-126 (317)
114 PF14712 Snapin_Pallidin: Snap 54.8 1.1E+02 0.0023 24.4 8.3 28 140-167 62-89 (92)
115 PF04375 HemX: HemX; InterPro 54.8 1.3E+02 0.0028 30.4 10.5 31 132-162 90-120 (372)
116 PF04012 PspA_IM30: PspA/IM30 54.6 95 0.0021 28.4 8.9 23 93-115 53-75 (221)
117 PF02561 FliS: Flagellar prote 54.6 1.1E+02 0.0024 25.7 8.7 38 131-168 72-118 (122)
118 PF13097 CENP-U: CENP-A nucleo 54.4 1.3E+02 0.0028 28.2 9.7 54 90-167 107-160 (175)
119 PF04508 Pox_A_type_inc: Viral 54.2 14 0.0003 24.1 2.3 21 1-21 3-23 (23)
120 PF02601 Exonuc_VII_L: Exonucl 54.1 1.6E+02 0.0034 28.4 10.7 32 86-117 153-184 (319)
121 KOG2724 Nuclear pore complex c 53.9 42 0.00091 35.5 7.0 39 260-301 257-298 (487)
122 KOG1656 Protein involved in gl 53.9 92 0.002 30.1 8.7 24 94-117 71-94 (221)
123 PF05377 FlaC_arch: Flagella a 53.2 73 0.0016 24.7 6.5 40 136-179 15-54 (55)
124 cd00446 GrpE GrpE is the adeni 53.0 99 0.0022 26.6 8.3 82 88-180 7-95 (137)
125 TIGR02338 gimC_beta prefoldin, 53.0 1.2E+02 0.0027 25.2 8.6 42 129-170 61-102 (110)
126 PF03993 DUF349: Domain of Unk 53.0 58 0.0013 24.6 6.1 30 86-115 19-48 (77)
127 PRK14150 heat shock protein Gr 52.6 98 0.0021 28.9 8.7 81 88-179 60-148 (193)
128 PF10146 zf-C4H2: Zinc finger- 52.6 2.2E+02 0.0048 27.4 11.2 15 96-110 30-44 (230)
129 COG3923 PriC Primosomal replic 52.3 22 0.00048 33.1 4.3 26 90-115 146-171 (175)
130 KOG0804 Cytoplasmic Zn-finger 52.3 2E+02 0.0043 30.9 11.6 23 87-109 335-358 (493)
131 KOG1301 Vesicle trafficking pr 52.0 55 0.0012 35.6 7.7 32 87-118 312-343 (621)
132 TIGR03017 EpsF chain length de 51.9 1.5E+02 0.0033 29.5 10.5 27 5-31 173-199 (444)
133 KOG1850 Myosin-like coiled-coi 51.9 2.4E+02 0.0052 29.2 11.7 35 74-112 135-169 (391)
134 PF14576 SEO_N: Sieve element 51.2 21 0.00045 35.6 4.2 26 90-115 251-276 (286)
135 TIGR01837 PHA_granule_1 poly(h 50.8 98 0.0021 26.5 7.8 25 86-110 25-49 (118)
136 KOG4484 Uncharacterized conser 50.7 1.1E+02 0.0024 29.0 8.5 58 99-170 25-82 (199)
137 PRK08870 flgL flagellar hook-a 50.7 75 0.0016 31.9 8.2 69 93-170 52-126 (404)
138 KOG4302 Microtubule-associated 50.6 63 0.0014 35.7 8.1 43 73-119 100-142 (660)
139 PF06705 SF-assemblin: SF-asse 50.1 1E+02 0.0022 29.0 8.5 34 135-168 85-118 (247)
140 PRK10325 heat shock protein Gr 50.1 94 0.002 29.1 8.1 82 88-180 61-150 (197)
141 KOG3067 Translin family protei 50.0 87 0.0019 30.2 7.9 36 132-167 38-73 (226)
142 PRK14145 heat shock protein Gr 49.9 95 0.002 29.3 8.1 73 89-173 68-140 (196)
143 KOG1924 RhoA GTPase effector D 49.9 4.7E+02 0.01 30.4 19.3 27 6-32 365-391 (1102)
144 PF10359 Fmp27_WPPW: RNA pol I 49.8 79 0.0017 33.0 8.3 68 95-169 167-234 (475)
145 PTZ00446 vacuolar sorting prot 49.8 32 0.00069 32.3 5.0 86 93-183 76-165 (191)
146 CHL00198 accA acetyl-CoA carbo 49.5 81 0.0017 31.9 8.1 20 94-113 9-28 (322)
147 TIGR02550 flagell_flgL flagell 49.3 75 0.0016 30.1 7.6 77 94-179 52-135 (306)
148 PRK14154 heat shock protein Gr 49.2 1.3E+02 0.0027 28.8 8.9 81 89-180 75-164 (208)
149 PRK10929 putative mechanosensi 49.0 1.3E+02 0.0029 35.1 10.6 62 94-171 176-237 (1109)
150 PRK14151 heat shock protein Gr 48.9 1.1E+02 0.0023 28.3 8.2 81 88-179 42-130 (176)
151 KOG0161 Myosin class II heavy 48.6 89 0.0019 38.5 9.5 29 87-115 1853-1881(1930)
152 PRK04325 hypothetical protein; 47.9 38 0.00082 27.0 4.5 24 92-115 10-33 (74)
153 PRK14141 heat shock protein Gr 47.9 1.1E+02 0.0023 29.2 8.2 50 130-179 84-146 (209)
154 PRK12803 flagellin; Provisiona 47.4 92 0.002 31.4 8.2 77 95-180 54-137 (335)
155 COG1579 Zn-ribbon protein, pos 47.3 1.1E+02 0.0024 29.8 8.4 69 89-164 57-125 (239)
156 COG5293 Predicted ATPase [Gene 47.3 73 0.0016 34.3 7.6 89 74-170 325-427 (591)
157 KOG2724 Nuclear pore complex c 47.2 93 0.002 33.0 8.3 10 197-206 184-193 (487)
158 PF10018 Med4: Vitamin-D-recep 47.2 84 0.0018 28.7 7.2 62 91-162 2-63 (188)
159 TIGR02231 conserved hypothetic 47.2 1.3E+02 0.0029 31.2 9.6 41 130-170 126-166 (525)
160 cd09238 V_Alix_like_1 Protein- 47.1 76 0.0017 31.5 7.5 25 88-112 196-220 (339)
161 PRK14153 heat shock protein Gr 46.7 1.2E+02 0.0026 28.5 8.3 83 87-180 54-143 (194)
162 PRK05729 valS valyl-tRNA synth 46.7 75 0.0016 35.5 8.1 65 89-162 809-873 (874)
163 PRK14162 heat shock protein Gr 46.6 1.1E+02 0.0025 28.6 8.1 81 88-179 61-148 (194)
164 PF04740 LXG: LXG domain of WX 46.4 59 0.0013 29.1 6.1 71 74-151 51-122 (204)
165 cd07657 F-BAR_Fes_Fer The F-BA 46.3 1.3E+02 0.0028 28.7 8.6 74 89-170 67-140 (237)
166 PF15397 DUF4618: Domain of un 46.3 88 0.0019 30.8 7.6 67 89-167 72-138 (258)
167 PF10392 COG5: Golgi transport 46.3 1.9E+02 0.0042 24.8 9.6 78 92-169 34-113 (132)
168 PRK14163 heat shock protein Gr 46.2 1.1E+02 0.0024 29.3 8.0 37 131-172 94-130 (214)
169 PF09712 PHA_synth_III_E: Poly 46.2 67 0.0014 31.6 6.8 20 150-169 273-292 (293)
170 PF09177 Syntaxin-6_N: Syntaxi 46.1 1.6E+02 0.0035 23.9 8.1 32 86-117 34-65 (97)
171 PF01486 K-box: K-box region; 46.0 1.6E+02 0.0035 24.0 9.8 69 93-164 14-83 (100)
172 KOG4571 Activating transcripti 45.8 3.4E+02 0.0073 27.5 11.8 79 74-172 213-292 (294)
173 cd09234 V_HD-PTP_like Protein- 45.6 99 0.0021 30.6 8.0 29 89-117 193-221 (337)
174 PRK12804 flagellin; Provisiona 45.5 80 0.0017 30.6 7.2 82 92-179 48-137 (301)
175 TIGR02338 gimC_beta prefoldin, 45.5 42 0.00091 28.0 4.7 29 87-115 77-105 (110)
176 PF09602 PhaP_Bmeg: Polyhydrox 45.4 2.4E+02 0.0051 26.3 9.8 93 74-170 31-135 (165)
177 TIGR02284 conserved hypothetic 45.3 2.1E+02 0.0045 24.9 11.1 51 93-152 32-82 (139)
178 PRK11519 tyrosine kinase; Prov 45.3 91 0.002 34.0 8.3 25 92-116 268-292 (719)
179 PRK14158 heat shock protein Gr 45.2 1.1E+02 0.0024 28.8 7.8 81 89-180 63-150 (194)
180 PF10112 Halogen_Hydrol: 5-bro 45.1 84 0.0018 28.5 6.9 24 3-26 68-91 (199)
181 cd07598 BAR_FAM92 The Bin/Amph 45.1 1.1E+02 0.0023 28.9 7.7 76 86-170 6-93 (211)
182 PRK04863 mukB cell division pr 45.1 2.2E+02 0.0047 34.4 11.8 79 90-174 403-488 (1486)
183 cd08915 V_Alix_like Protein-in 45.1 94 0.002 30.5 7.7 20 96-115 245-264 (342)
184 PF10146 zf-C4H2: Zinc finger- 45.1 2.2E+02 0.0047 27.4 9.9 61 92-165 9-69 (230)
185 PF14772 NYD-SP28: Sperm tail 45.0 1.7E+02 0.0038 24.0 9.1 74 91-171 21-98 (104)
186 TIGR02977 phageshock_pspA phag 44.8 1.8E+02 0.004 27.0 9.2 11 174-184 160-170 (219)
187 PF12018 DUF3508: Domain of un 44.8 1.9E+02 0.004 28.2 9.6 79 91-170 9-90 (281)
188 PF13874 Nup54: Nucleoporin co 44.7 75 0.0016 27.7 6.3 39 132-170 55-93 (141)
189 PF08385 DHC_N1: Dynein heavy 44.7 73 0.0016 32.6 7.1 73 94-170 294-378 (579)
190 PRK06663 flagellar hook-associ 44.5 94 0.002 31.7 7.8 68 93-169 53-126 (419)
191 PF11157 DUF2937: Protein of u 44.5 1.4E+02 0.0031 27.1 8.2 68 93-168 29-97 (167)
192 PF08650 DASH_Dad4: DASH compl 44.3 1.2E+02 0.0025 24.7 6.7 49 131-179 14-72 (72)
193 cd09236 V_AnPalA_UmRIM20_like 44.3 1.1E+02 0.0023 30.6 8.0 61 96-169 256-319 (353)
194 KOG4427 E3 ubiquitin protein l 44.2 2.3E+02 0.0049 32.6 11.0 71 88-170 35-105 (1096)
195 PRK14161 heat shock protein Gr 44.1 1.4E+02 0.003 27.7 8.1 82 88-180 41-132 (178)
196 KOG2065 Gamma-tubulin ring com 44.0 1.5E+02 0.0032 32.3 9.2 66 83-156 85-150 (679)
197 cd07680 F-BAR_PACSIN1 The F-BA 44.0 1.9E+02 0.0042 28.1 9.5 68 93-172 170-238 (258)
198 PF05266 DUF724: Protein of un 44.0 1.5E+02 0.0033 27.6 8.5 30 137-166 154-183 (190)
199 PF10186 Atg14: UV radiation r 44.0 1.8E+02 0.004 26.9 9.1 63 92-163 64-126 (302)
200 PRK00736 hypothetical protein; 44.0 49 0.0011 26.0 4.5 23 93-115 7-29 (68)
201 TIGR00513 accA acetyl-CoA carb 44.0 41 0.00089 33.8 5.1 21 94-114 6-26 (316)
202 PF02050 FliJ: Flagellar FliJ 43.9 1.5E+02 0.0033 23.0 9.6 23 93-115 7-29 (123)
203 PRK09343 prefoldin subunit bet 43.8 1.9E+02 0.0042 24.8 8.5 42 129-170 65-106 (121)
204 PRK04406 hypothetical protein; 43.8 48 0.001 26.6 4.5 23 93-115 13-35 (75)
205 KOG0994 Extracellular matrix g 43.7 1.3E+02 0.0029 35.8 9.4 13 93-105 1203-1215(1758)
206 PF04899 MbeD_MobD: MbeD/MobD 43.5 58 0.0013 26.1 4.9 46 107-164 1-64 (70)
207 COG1283 NptA Na+/phosphate sym 43.5 1E+02 0.0022 33.4 8.1 77 76-160 345-421 (533)
208 PF05667 DUF812: Protein of un 43.2 2.4E+02 0.0052 30.8 10.9 72 93-170 358-429 (594)
209 PRK14148 heat shock protein Gr 43.1 1.4E+02 0.0029 28.2 8.1 81 88-179 62-149 (195)
210 PF12729 4HB_MCP_1: Four helix 43.1 1.8E+02 0.0039 23.7 9.5 25 89-113 77-101 (181)
211 KOG2574 mRNA splicing factor P 43.1 39 0.00086 35.7 4.9 63 129-206 287-350 (492)
212 KOG0810 SNARE protein Syntaxin 43.1 87 0.0019 31.3 7.1 60 85-161 180-239 (297)
213 PF04912 Dynamitin: Dynamitin 42.9 3.1E+02 0.0068 27.6 11.2 73 98-170 209-282 (388)
214 PRK00295 hypothetical protein; 42.9 52 0.0011 25.8 4.5 25 91-115 5-29 (68)
215 PF11593 Med3: Mediator comple 42.9 4.2E+02 0.009 27.7 12.7 30 141-170 64-93 (379)
216 PLN03230 acetyl-coenzyme A car 42.9 1E+02 0.0023 32.4 7.9 37 74-114 60-96 (431)
217 PRK10803 tol-pal system protei 42.8 93 0.002 29.9 7.1 41 131-171 57-101 (263)
218 cd02683 MIT_1 MIT: domain cont 42.7 1.7E+02 0.0037 23.3 8.2 26 93-118 19-44 (77)
219 TIGR01010 BexC_CtrB_KpsE polys 42.7 1.2E+02 0.0027 29.7 8.1 25 92-116 171-195 (362)
220 cd00176 SPEC Spectrin repeats, 42.7 2.1E+02 0.0044 24.1 9.7 73 87-164 36-108 (213)
221 PLN02943 aminoacyl-tRNA ligase 42.4 1.2E+02 0.0026 34.6 8.9 65 89-162 887-951 (958)
222 PRK02793 phi X174 lysis protei 42.4 52 0.0011 26.1 4.5 25 91-115 8-32 (72)
223 PF13747 DUF4164: Domain of un 42.4 1.1E+02 0.0024 25.2 6.6 68 94-167 4-71 (89)
224 KOG1853 LIS1-interacting prote 42.2 1.4E+02 0.0029 30.1 8.2 40 131-170 76-115 (333)
225 PF15619 Lebercilin: Ciliary p 42.2 2.8E+02 0.0061 25.9 9.9 66 86-163 120-185 (194)
226 PRK13729 conjugal transfer pil 42.1 75 0.0016 33.9 6.8 15 150-164 105-119 (475)
227 PRK12805 flagellin; Provisiona 42.0 1.5E+02 0.0032 28.7 8.4 78 94-180 53-137 (287)
228 PF07426 Dynactin_p22: Dynacti 42.0 1.1E+02 0.0024 28.1 7.2 63 99-167 6-71 (174)
229 KOG0994 Extracellular matrix g 41.9 1.9E+02 0.0041 34.7 10.2 29 2-30 1425-1453(1758)
230 PF05008 V-SNARE: Vesicle tran 41.8 1.6E+02 0.0035 22.6 7.9 26 90-115 24-49 (79)
231 PF04740 LXG: LXG domain of WX 41.8 2E+02 0.0044 25.6 8.8 21 95-115 103-123 (204)
232 PF09731 Mitofilin: Mitochondr 41.8 1.6E+02 0.0034 31.0 9.1 18 135-152 251-268 (582)
233 KOG0811 SNARE protein PEP12/VA 41.1 2.7E+02 0.0059 27.5 10.1 67 88-161 18-84 (269)
234 PF14282 FlxA: FlxA-like prote 41.1 1.9E+02 0.0041 24.3 7.9 59 97-160 18-76 (106)
235 PRK12807 flagellin; Provisiona 41.1 1.4E+02 0.0031 28.8 8.1 73 98-179 57-136 (287)
236 TIGR01005 eps_transp_fam exopo 40.9 1.8E+02 0.0039 31.6 9.6 28 4-31 195-222 (754)
237 PRK05724 acetyl-CoA carboxylas 40.8 72 0.0016 32.2 6.2 21 93-113 5-25 (319)
238 PF14257 DUF4349: Domain of un 40.7 1.1E+02 0.0023 29.0 7.1 21 95-115 136-156 (262)
239 PRK14149 heat shock protein Gr 40.6 1.4E+02 0.003 28.1 7.7 82 88-180 58-145 (191)
240 PRK10636 putative ABC transpor 40.6 1.4E+02 0.0031 31.9 8.8 25 91-115 563-587 (638)
241 PRK12802 flagellin; Provisiona 40.5 1.1E+02 0.0024 29.3 7.3 84 92-181 50-140 (282)
242 PF09744 Jnk-SapK_ap_N: JNK_SA 40.5 81 0.0018 28.7 6.0 22 5-26 21-42 (158)
243 TIGR03007 pepcterm_ChnLen poly 40.3 2.9E+02 0.0062 28.2 10.6 24 7-30 165-188 (498)
244 PRK14692 lagellar hook-associa 40.3 1.1E+02 0.0024 34.3 8.0 69 93-170 52-126 (749)
245 PF14966 DNA_repr_REX1B: DNA r 40.3 2.2E+02 0.0047 23.8 8.1 40 74-116 26-65 (97)
246 PF08913 VBS: Vinculin Binding 40.1 2.6E+02 0.0056 24.6 10.4 81 94-182 3-100 (125)
247 cd07686 F-BAR_Fer The F-BAR (F 40.1 2E+02 0.0044 27.7 8.9 76 86-170 64-141 (234)
248 KOG2196 Nuclear porin [Nuclear 40.1 3.6E+02 0.0077 26.8 10.6 20 96-115 76-95 (254)
249 TIGR02977 phageshock_pspA phag 40.0 2.1E+02 0.0045 26.6 8.8 23 93-115 54-76 (219)
250 PF00261 Tropomyosin: Tropomyo 39.9 2.9E+02 0.0063 26.0 9.8 27 89-115 125-151 (237)
251 PRK14160 heat shock protein Gr 39.8 1.4E+02 0.0031 28.4 7.8 79 89-179 84-166 (211)
252 PF14643 DUF4455: Domain of un 39.7 1.6E+02 0.0035 30.6 8.8 77 86-170 67-148 (473)
253 PF07061 Swi5: Swi5; InterPro 39.7 98 0.0021 25.4 5.8 45 95-143 4-48 (83)
254 TIGR03007 pepcterm_ChnLen poly 39.6 1.7E+02 0.0038 29.8 8.9 27 91-117 161-187 (498)
255 PF00038 Filament: Intermediat 39.6 3E+02 0.0065 26.2 10.0 73 86-167 183-255 (312)
256 PF02646 RmuC: RmuC family; I 39.5 97 0.0021 30.4 6.8 27 89-115 4-30 (304)
257 PRK10698 phage shock protein P 39.3 2.1E+02 0.0046 27.0 8.8 72 93-164 54-135 (222)
258 PF08946 Osmo_CC: Osmosensory 39.3 36 0.00079 25.6 2.9 27 88-114 9-35 (46)
259 TIGR01843 type_I_hlyD type I s 39.3 2.9E+02 0.0063 26.8 10.0 20 148-167 209-228 (423)
260 PF07200 Mod_r: Modifier of ru 39.2 30 0.00066 29.8 3.0 39 141-179 54-92 (150)
261 KOG3719 Carnitine O-acyltransf 39.1 23 0.0005 38.3 2.6 49 70-118 12-62 (638)
262 PF09304 Cortex-I_coil: Cortex 39.0 2.6E+02 0.0057 24.4 9.2 72 90-170 15-86 (107)
263 PF11568 Med29: Mediator compl 39.0 1.7E+02 0.0036 26.8 7.7 66 2-115 8-73 (148)
264 cd07664 BAR_SNX2 The Bin/Amphi 38.9 2.7E+02 0.0059 26.7 9.5 31 83-113 18-51 (234)
265 cd07655 F-BAR_PACSIN The F-BAR 38.8 2.4E+02 0.0053 26.8 9.3 29 144-172 209-238 (258)
266 PHA02562 46 endonuclease subun 38.3 1.9E+02 0.0041 29.7 9.0 34 137-170 215-248 (562)
267 PF04130 Spc97_Spc98: Spc97 / 38.3 1.2E+02 0.0027 29.9 7.4 34 84-117 68-101 (542)
268 cd00890 Prefoldin Prefoldin is 38.2 2.2E+02 0.0049 23.3 10.3 41 130-170 82-122 (129)
269 KOG4674 Uncharacterized conser 38.2 1.5E+02 0.0032 36.6 9.0 65 89-169 828-892 (1822)
270 PF04568 IATP: Mitochondrial A 38.2 67 0.0014 27.4 4.8 21 94-114 79-99 (100)
271 PF01496 V_ATPase_I: V-type AT 38.1 2E+02 0.0043 31.6 9.5 25 147-171 259-283 (759)
272 PRK14146 heat shock protein Gr 38.0 1.8E+02 0.004 27.7 8.2 82 87-179 75-163 (215)
273 PRK09546 zntB zinc transporter 37.9 2.7E+02 0.0058 27.0 9.6 29 88-116 147-175 (324)
274 COG3685 Uncharacterized protei 37.9 63 0.0014 30.1 4.9 30 90-119 38-67 (167)
275 KOG0040 Ca2+-binding actin-bun 37.6 69 0.0015 39.1 6.1 73 80-154 2091-2163(2399)
276 PF03792 PBC: PBC domain; Int 37.6 1.8E+02 0.004 27.6 8.0 63 99-166 127-190 (191)
277 KOG0163 Myosin class VI heavy 37.5 1.8E+02 0.0039 33.5 9.0 28 89-116 898-929 (1259)
278 PF11207 DUF2989: Protein of u 37.4 67 0.0015 30.6 5.2 62 99-175 60-123 (203)
279 PF15393 DUF4615: Domain of un 37.4 71 0.0015 28.3 5.0 20 94-116 1-20 (124)
280 PRK14156 heat shock protein Gr 37.3 1.6E+02 0.0034 27.4 7.4 80 88-180 49-132 (177)
281 COG1570 XseA Exonuclease VII, 36.9 3.6E+02 0.0077 28.7 10.7 28 88-115 273-300 (440)
282 TIGR01834 PHA_synth_III_E poly 36.9 2.6E+02 0.0056 28.5 9.4 34 86-119 251-285 (320)
283 TIGR01010 BexC_CtrB_KpsE polys 36.9 4.2E+02 0.0091 26.0 14.7 26 6-31 173-198 (362)
284 PRK11519 tyrosine kinase; Prov 36.9 6E+02 0.013 27.8 13.9 27 5-31 269-295 (719)
285 PRK09841 cryptic autophosphory 36.9 6E+02 0.013 27.9 16.0 28 4-31 268-295 (726)
286 COG2433 Uncharacterized conser 36.7 3.6E+02 0.0077 30.0 10.9 59 93-167 417-477 (652)
287 PF03938 OmpH: Outer membrane 36.7 2.1E+02 0.0044 24.5 7.7 30 86-115 31-60 (158)
288 KOG0976 Rho/Rac1-interacting s 36.6 1.4E+02 0.0031 34.3 8.1 29 87-115 88-116 (1265)
289 PRK13874 conjugal transfer pro 36.6 2.9E+02 0.0062 26.6 9.3 81 71-168 26-112 (230)
290 PRK08073 flgL flagellar hook-a 36.5 1.9E+02 0.0041 27.8 8.2 67 94-169 53-125 (287)
291 TIGR03513 GldL_gliding gliding 36.4 3.9E+02 0.0085 25.6 10.6 17 148-164 171-187 (202)
292 PF11285 DUF3086: Protein of u 36.2 1.4E+02 0.003 29.9 7.2 48 90-145 3-57 (283)
293 PF03978 Borrelia_REV: Borreli 36.2 2.9E+02 0.0064 25.6 8.8 49 98-157 47-96 (160)
294 PF03962 Mnd1: Mnd1 family; I 36.1 2.4E+02 0.0052 26.0 8.5 30 88-117 66-95 (188)
295 PRK00286 xseA exodeoxyribonucl 36.1 4.8E+02 0.01 26.5 12.0 28 88-115 272-299 (438)
296 PRK02119 hypothetical protein; 36.1 75 0.0016 25.3 4.5 26 90-115 8-33 (73)
297 PF09789 DUF2353: Uncharacteri 35.8 2.8E+02 0.0061 28.1 9.5 71 92-164 31-101 (319)
298 PF09036 Bcr-Abl_Oligo: Bcr-Ab 35.7 56 0.0012 27.0 3.7 23 93-115 28-50 (79)
299 cd07597 BAR_SNX8 The Bin/Amphi 35.5 1.6E+02 0.0035 28.0 7.4 63 90-152 42-108 (246)
300 PRK14549 50S ribosomal protein 35.3 94 0.002 24.5 4.9 30 150-179 13-45 (69)
301 PF04340 DUF484: Protein of un 35.1 62 0.0013 29.9 4.5 54 84-147 34-87 (225)
302 TIGR00606 rad50 rad50. This fa 35.1 1.8E+02 0.004 34.0 9.1 70 92-168 793-862 (1311)
303 PF06148 COG2: COG (conserved 35.0 24 0.00052 30.1 1.7 47 131-177 44-90 (133)
304 PF02996 Prefoldin: Prefoldin 34.9 1.6E+02 0.0036 24.0 6.6 26 90-115 76-101 (120)
305 KOG0247 Kinesin-like protein [ 34.8 2.1E+02 0.0044 32.5 8.9 69 88-170 494-562 (809)
306 PF08385 DHC_N1: Dynein heavy 34.8 4.1E+02 0.0089 27.2 10.7 21 16-36 322-342 (579)
307 PRK10803 tol-pal system protei 34.7 1.2E+02 0.0027 29.1 6.6 21 132-152 83-103 (263)
308 PRK11459 multidrug resistance 34.7 4.6E+02 0.01 26.8 11.0 66 90-171 364-429 (478)
309 COG4942 Membrane-bound metallo 34.6 5.6E+02 0.012 27.1 11.6 63 97-161 37-99 (420)
310 PRK05771 V-type ATP synthase s 34.6 2.8E+02 0.0062 29.8 9.9 23 93-115 45-67 (646)
311 PRK07192 flgL flagellar hook-a 34.5 1.8E+02 0.0038 27.9 7.6 68 94-170 53-126 (305)
312 PF08653 DASH_Dam1: DASH compl 34.4 83 0.0018 24.5 4.4 33 130-166 7-39 (58)
313 PF12841 YvrJ: YvrJ protein fa 34.4 59 0.0013 23.3 3.3 22 92-113 16-37 (38)
314 PRK10697 DNA-binding transcrip 34.4 66 0.0014 28.1 4.3 29 90-118 80-108 (118)
315 PRK08913 flgL flagellar hook-a 34.4 1.2E+02 0.0027 28.9 6.5 68 93-169 54-125 (301)
316 PTZ00419 valyl-tRNA synthetase 34.4 2E+02 0.0043 32.8 9.0 65 89-162 927-991 (995)
317 PF07412 Geminin: Geminin; In 34.3 91 0.002 29.7 5.5 77 74-164 95-171 (200)
318 TIGR00293 prefoldin, archaeal 34.2 2.8E+02 0.006 23.2 11.0 83 87-169 9-120 (126)
319 PF08429 PLU-1: PLU-1-like pro 34.0 4E+02 0.0088 25.7 10.1 82 73-164 184-265 (335)
320 PF00038 Filament: Intermediat 33.9 4.1E+02 0.0089 25.3 10.0 40 131-170 106-145 (312)
321 PF10186 Atg14: UV radiation r 33.9 3.3E+02 0.0071 25.2 9.1 22 5-26 26-47 (302)
322 PF09731 Mitofilin: Mitochondr 33.8 5.9E+02 0.013 26.8 12.1 12 151-162 380-391 (582)
323 PF07889 DUF1664: Protein of u 33.8 3.4E+02 0.0073 24.0 9.6 23 132-154 100-122 (126)
324 TIGR00012 L29 ribosomal protei 33.6 74 0.0016 23.8 3.9 29 151-179 7-37 (55)
325 COG5391 Phox homology (PX) dom 33.5 89 0.0019 33.5 5.9 72 86-161 449-520 (524)
326 PF08654 DASH_Dad2: DASH compl 33.5 1.5E+02 0.0031 25.3 6.1 45 94-147 17-61 (103)
327 PF00429 TLV_coat: ENV polypro 33.5 1.1E+02 0.0024 32.8 6.7 33 86-118 423-455 (561)
328 KOG1924 RhoA GTPase effector D 33.4 1.8E+02 0.004 33.4 8.3 65 93-163 896-960 (1102)
329 COG0497 RecN ATPase involved i 33.4 4.2E+02 0.0091 29.0 10.8 36 136-171 329-364 (557)
330 KOG1853 LIS1-interacting prote 33.3 2.7E+02 0.006 28.0 8.7 24 92-115 92-115 (333)
331 TIGR03185 DNA_S_dndD DNA sulfu 33.2 5.7E+02 0.012 27.6 11.9 35 130-164 423-457 (650)
332 PF05384 DegS: Sensor protein 33.2 2.8E+02 0.0061 25.3 8.3 32 130-170 76-107 (159)
333 PF14131 DUF4298: Domain of un 33.1 1.9E+02 0.0042 23.6 6.6 23 93-115 2-24 (90)
334 PF10168 Nup88: Nuclear pore c 33.1 2.3E+02 0.005 31.5 9.0 15 89-103 556-570 (717)
335 PF01025 GrpE: GrpE; InterPro 33.0 3E+02 0.0066 23.8 8.3 88 89-180 23-121 (165)
336 cd07623 BAR_SNX1_2 The Bin/Amp 32.9 3.4E+02 0.0075 25.3 9.1 29 85-113 10-41 (224)
337 PF05276 SH3BP5: SH3 domain-bi 32.9 1.2E+02 0.0025 29.5 6.1 29 87-116 174-202 (239)
338 PF04012 PspA_IM30: PspA/IM30 32.8 3.9E+02 0.0084 24.4 10.0 25 91-115 55-79 (221)
339 PHA01794 hypothetical protein 32.8 1.8E+02 0.004 26.2 6.8 53 89-164 73-132 (134)
340 PF10211 Ax_dynein_light: Axon 32.7 4E+02 0.0087 24.6 9.3 17 147-163 132-148 (189)
341 COG4768 Uncharacterized protei 32.4 3.5E+02 0.0076 24.6 8.5 28 88-115 21-48 (139)
342 PRK03947 prefoldin subunit alp 32.4 3.2E+02 0.0069 23.3 10.9 39 132-170 91-129 (140)
343 KOG0517 Beta-spectrin [Cytoske 32.3 2.3E+02 0.0049 35.5 9.2 94 96-193 1380-1483(2473)
344 PF06698 DUF1192: Protein of u 32.2 71 0.0015 24.9 3.7 24 93-116 23-46 (59)
345 cd07685 F-BAR_Fes The F-BAR (F 32.2 4.6E+02 0.01 25.7 9.9 76 86-170 68-145 (237)
346 PF12325 TMF_TATA_bd: TATA ele 32.2 2.7E+02 0.0059 24.3 7.7 32 137-168 80-115 (120)
347 PRK09546 zntB zinc transporter 32.1 2.5E+02 0.0054 27.3 8.3 16 100-115 152-167 (324)
348 KOG2689 Predicted ubiquitin re 31.8 5.6E+02 0.012 25.9 11.0 52 131-193 127-179 (290)
349 TIGR00634 recN DNA repair prot 31.8 2.1E+02 0.0045 30.3 8.2 26 145-170 342-367 (563)
350 COG1344 FlgL Flagellin and rel 31.7 1.3E+02 0.0029 29.8 6.5 42 129-170 79-126 (360)
351 smart00502 BBC B-Box C-termina 31.7 2.6E+02 0.0057 22.1 7.9 63 94-168 3-65 (127)
352 PF11945 WASH_WAHD: WAHD domai 31.5 1.7E+02 0.0038 29.1 7.2 54 97-162 17-70 (297)
353 cd07666 BAR_SNX7 The Bin/Amphi 31.5 2.1E+02 0.0046 27.7 7.6 27 78-105 46-75 (243)
354 smart00150 SPEC Spectrin repea 31.5 2.2E+02 0.0047 21.2 6.9 21 93-113 40-60 (101)
355 KOG0250 DNA repair protein RAD 31.4 2.6E+02 0.0056 32.8 9.3 11 103-113 377-387 (1074)
356 cd02656 MIT MIT: domain contai 31.1 2.4E+02 0.0052 21.5 6.7 24 94-117 20-43 (75)
357 PF05600 DUF773: Protein of un 31.1 2E+02 0.0044 30.6 8.0 84 83-170 123-212 (507)
358 PF14235 DUF4337: Domain of un 31.0 79 0.0017 28.6 4.4 30 86-115 68-97 (157)
359 COG5314 Conjugal transfer/entr 30.8 5.4E+02 0.012 25.5 10.3 76 71-163 33-114 (252)
360 PRK10093 primosomal replicatio 30.7 77 0.0017 29.5 4.3 27 89-115 141-167 (171)
361 PF13166 AAA_13: AAA domain 30.7 5E+02 0.011 27.7 10.9 29 88-116 319-347 (712)
362 PF01442 Apolipoprotein: Apoli 30.6 2.4E+02 0.0053 23.8 7.1 63 95-165 2-65 (202)
363 KOG2036 Predicted P-loop ATPas 30.4 1.3E+02 0.0029 34.2 6.6 37 106-150 867-903 (1011)
364 PRK10246 exonuclease subunit S 30.4 6.3E+02 0.014 29.1 12.2 27 89-115 782-808 (1047)
365 PRK00846 hypothetical protein; 30.4 3E+02 0.0066 22.5 7.8 22 93-114 15-36 (77)
366 PF06103 DUF948: Bacterial pro 30.4 2.8E+02 0.006 22.0 7.4 55 89-148 24-78 (90)
367 PRK10869 recombination and rep 30.1 6.9E+02 0.015 26.7 11.7 112 6-173 261-387 (553)
368 PRK00708 sec-independent trans 30.1 2.8E+02 0.0061 26.6 8.0 22 88-109 31-52 (209)
369 COG1730 GIM5 Predicted prefold 30.0 3E+02 0.0066 24.8 7.8 22 94-115 90-111 (145)
370 PF08317 Spc7: Spc7 kinetochor 30.0 1.7E+02 0.0037 28.8 6.9 23 9-31 71-93 (325)
371 PF04375 HemX: HemX; InterPro 30.0 2.5E+02 0.0054 28.3 8.2 23 171-193 162-184 (372)
372 PF13040 DUF3901: Protein of u 30.0 79 0.0017 23.0 3.4 26 89-114 8-33 (40)
373 PF01627 Hpt: Hpt domain; Int 30.0 2E+02 0.0043 21.3 5.8 18 130-147 29-46 (90)
374 PRK14140 heat shock protein Gr 29.9 4E+02 0.0086 25.1 8.9 80 90-180 61-147 (191)
375 PLN02381 valyl-tRNA synthetase 29.9 2.6E+02 0.0057 32.4 9.2 66 89-163 995-1060(1066)
376 COG1842 PspA Phage shock prote 29.8 3E+02 0.0064 26.4 8.2 71 93-164 54-135 (225)
377 TIGR02978 phageshock_pspC phag 29.7 86 0.0019 27.4 4.2 29 90-118 83-111 (121)
378 PRK14159 heat shock protein Gr 29.6 3.1E+02 0.0067 25.4 8.0 81 88-179 45-131 (176)
379 PF06160 EzrA: Septation ring 29.3 3.8E+02 0.0083 28.6 9.7 24 92-115 345-368 (560)
380 KOG3221 Glycolipid transfer pr 29.3 1.4E+02 0.0029 28.6 5.7 24 146-170 156-179 (199)
381 PF04906 Tweety: Tweety; Inte 29.3 2.6E+02 0.0057 28.7 8.3 81 73-159 265-348 (406)
382 PRK07701 flgL flagellar hook-a 29.2 2.4E+02 0.0051 27.0 7.5 67 93-168 52-124 (298)
383 PRK09841 cryptic autophosphory 29.1 2.1E+02 0.0045 31.4 7.9 27 91-117 267-293 (726)
384 PF07996 T4SS: Type IV secreti 29.1 91 0.002 27.8 4.4 29 90-118 18-46 (195)
385 PRK00888 ftsB cell division pr 29.0 1.6E+02 0.0035 24.8 5.7 38 132-169 31-70 (105)
386 PF03357 Snf7: Snf7; InterPro 29.0 1.8E+02 0.0039 24.8 6.1 27 89-115 6-32 (171)
387 PRK08412 flgL flagellar hook-a 28.8 2.1E+02 0.0046 32.6 8.0 68 93-169 52-125 (827)
388 PRK06819 flagellin; Validated 28.8 1.4E+02 0.003 30.7 6.2 83 93-181 51-140 (376)
389 PRK09343 prefoldin subunit bet 28.8 1.1E+02 0.0024 26.2 4.7 25 91-115 71-95 (121)
390 COG5384 Mpp10 U3 small nucleol 28.7 53 0.0012 34.8 3.2 23 93-115 274-296 (569)
391 cd07619 BAR_Rich2 The Bin/Amph 28.6 2.8E+02 0.0061 27.1 7.9 73 86-167 164-237 (248)
392 PF00261 Tropomyosin: Tropomyo 28.6 5E+02 0.011 24.4 10.8 27 144-170 199-225 (237)
393 PF05289 BLYB: Borrelia hemoly 28.6 3.1E+02 0.0068 23.9 7.3 27 89-115 37-63 (105)
394 PRK15178 Vi polysaccharide exp 28.6 4.1E+02 0.0089 28.0 9.6 29 87-115 282-310 (434)
395 PF12297 EVC2_like: Ellis van 28.4 5.8E+02 0.013 27.1 10.5 30 128-157 188-217 (429)
396 KOG1920 IkappaB kinase complex 28.4 3E+02 0.0065 32.8 9.1 66 15-117 961-1026(1265)
397 KOG2129 Uncharacterized conser 28.3 5.6E+02 0.012 27.6 10.4 6 129-134 233-238 (552)
398 COG2900 SlyX Uncharacterized p 28.3 3.3E+02 0.0072 22.3 7.7 19 94-112 11-29 (72)
399 PF05974 DUF892: Domain of unk 28.3 3.3E+02 0.0071 24.2 7.8 29 91-119 35-63 (159)
400 COG2959 HemX Uncharacterized e 28.3 4.8E+02 0.01 27.4 9.8 55 135-189 130-184 (391)
401 cd01043 DPS DPS protein, ferri 28.2 3.6E+02 0.0078 22.6 8.9 30 89-118 29-58 (139)
402 cd00089 HR1 Protein kinase C-r 28.2 2.8E+02 0.0061 21.3 8.0 62 90-162 8-69 (72)
403 COG1340 Uncharacterized archae 28.1 3.9E+02 0.0085 27.0 8.9 28 131-158 168-195 (294)
404 PF01627 Hpt: Hpt domain; Int 28.1 1.5E+02 0.0033 21.9 4.9 20 88-107 2-21 (90)
405 PF07851 TMPIT: TMPIT-like pro 27.9 5.1E+02 0.011 26.5 9.9 28 90-117 10-37 (330)
406 KOG3119 Basic region leucine z 27.8 95 0.0021 30.2 4.6 29 87-115 218-246 (269)
407 PRK06008 flgL flagellar hook-a 27.8 2.1E+02 0.0044 28.4 7.0 67 93-168 55-124 (348)
408 PRK14160 heat shock protein Gr 27.7 3E+02 0.0065 26.3 7.8 42 130-171 56-97 (211)
409 PRK06975 bifunctional uroporph 27.7 3.5E+02 0.0077 29.5 9.3 36 132-167 368-403 (656)
410 TIGR03185 DNA_S_dndD DNA sulfu 27.6 3.8E+02 0.0083 28.8 9.5 23 131-153 240-262 (650)
411 COG4942 Membrane-bound metallo 27.6 6.8E+02 0.015 26.5 10.9 32 132-163 200-231 (420)
412 COG0497 RecN ATPase involved i 27.6 8.5E+02 0.018 26.7 12.0 28 130-157 344-371 (557)
413 PF08317 Spc7: Spc7 kinetochor 27.4 6.1E+02 0.013 25.0 10.6 10 17-26 89-98 (325)
414 PF00831 Ribosomal_L29: Riboso 27.4 1.1E+02 0.0025 23.0 4.0 30 150-179 8-39 (58)
415 PRK02224 chromosome segregatio 27.4 3.6E+02 0.0077 29.7 9.3 17 98-114 627-643 (880)
416 PF04111 APG6: Autophagy prote 27.4 6.3E+02 0.014 25.1 11.4 18 150-167 107-124 (314)
417 PRK08032 fliD flagellar cappin 27.3 1.6E+02 0.0035 30.6 6.4 23 93-115 408-430 (462)
418 KOG1760 Molecular chaperone Pr 27.2 1.8E+02 0.0039 26.2 5.8 25 91-115 30-54 (131)
419 PRK10807 paraquat-inducible pr 27.2 3.7E+02 0.0081 28.8 9.2 27 89-115 434-460 (547)
420 KOG3518 Putative guanine nucle 27.1 2.6E+02 0.0055 29.4 7.6 82 88-184 253-346 (521)
421 COG5104 PRP40 Splicing factor 27.1 4E+02 0.0088 28.8 9.2 33 83-115 407-439 (590)
422 PHA02562 46 endonuclease subun 27.0 1.3E+02 0.0029 30.8 5.8 28 88-115 303-330 (562)
423 cd04766 HTH_HspR Helix-Turn-He 27.0 1.1E+02 0.0023 24.4 4.1 21 95-115 69-89 (91)
424 cd07614 BAR_Endophilin_A2 The 26.9 2.7E+02 0.0059 26.7 7.4 61 94-159 157-217 (223)
425 PF08359 TetR_C_4: YsiA-like p 26.9 3.5E+02 0.0076 22.1 7.5 63 96-170 1-74 (133)
426 PF13801 Metal_resist: Heavy-m 26.9 3E+02 0.0066 21.4 6.6 29 150-183 60-88 (125)
427 PRK11147 ABC transporter ATPas 26.9 3.2E+02 0.007 29.2 8.7 26 89-115 567-592 (635)
428 TIGR00208 fliS flagellar biosy 26.9 4.1E+02 0.0089 22.8 9.5 36 132-167 75-119 (124)
429 PRK10929 putative mechanosensi 26.8 4.1E+02 0.0088 31.3 10.0 83 84-169 208-299 (1109)
430 PF00015 MCPsignal: Methyl-acc 26.8 4.3E+02 0.0092 23.0 9.0 8 96-103 98-105 (213)
431 COG2198 ArcB FOG: HPt domain [ 26.7 2.2E+02 0.0048 23.4 6.0 23 86-108 22-44 (122)
432 TIGR01843 type_I_hlyD type I s 26.7 4E+02 0.0087 25.9 8.7 22 143-164 211-232 (423)
433 PRK12806 flagellin; Provisiona 26.7 1.6E+02 0.0034 31.2 6.2 72 93-170 51-128 (475)
434 KOG3540 Beta amyloid precursor 26.6 3.7E+02 0.0081 29.3 8.9 34 86-119 291-326 (615)
435 PF08928 DUF1910: Domain of un 26.5 76 0.0016 26.3 3.2 26 86-111 7-32 (117)
436 PRK14900 valS valyl-tRNA synth 26.5 2.7E+02 0.0058 32.2 8.4 66 89-163 840-905 (1052)
437 PF02388 FemAB: FemAB family; 26.5 3.7E+02 0.0081 27.3 8.7 34 82-115 213-259 (406)
438 PF11855 DUF3375: Protein of u 26.4 3.6E+02 0.0077 28.3 8.8 56 96-154 142-197 (478)
439 COG1196 Smc Chromosome segrega 26.2 3.9E+02 0.0084 31.0 9.7 15 98-112 828-842 (1163)
440 PF00804 Syntaxin: Syntaxin; 26.2 3E+02 0.0066 21.1 9.2 28 88-115 4-31 (103)
441 PRK08032 fliD flagellar cappin 26.2 3.2E+02 0.007 28.4 8.4 32 136-167 407-438 (462)
442 PF00210 Ferritin: Ferritin-li 26.2 3.4E+02 0.0074 21.7 9.5 78 88-165 29-113 (142)
443 PRK08869 flagellin; Reviewed 26.1 1.8E+02 0.004 29.4 6.5 83 92-180 49-138 (376)
444 KOG2991 Splicing regulator [RN 26.1 3E+02 0.0066 27.8 7.7 13 100-112 216-228 (330)
445 PF05596 Taeniidae_ag: Taeniid 26.0 3.3E+02 0.0072 21.5 6.5 55 97-161 6-61 (64)
446 TIGR02169 SMC_prok_A chromosom 25.9 5.6E+02 0.012 28.5 10.5 11 146-156 879-889 (1164)
447 PF05667 DUF812: Protein of un 25.8 7.6E+02 0.017 27.0 11.3 22 2-23 240-261 (594)
448 PF12128 DUF3584: Protein of u 25.7 8.6E+02 0.019 28.5 12.3 63 91-169 607-669 (1201)
449 PLN03229 acetyl-coenzyme A car 25.6 2.9E+02 0.0063 31.3 8.2 36 74-113 81-116 (762)
450 PRK12584 flagellin A; Reviewed 25.6 2.9E+02 0.0063 29.5 8.0 64 98-170 59-128 (510)
451 PF14931 IFT20: Intraflagellar 25.6 4.5E+02 0.0099 22.9 9.6 26 146-171 84-109 (120)
452 COG2882 FliJ Flagellar biosynt 25.5 4.7E+02 0.01 23.8 8.3 39 132-170 68-106 (148)
453 PF04129 Vps52: Vps52 / Sac2 f 25.3 7E+02 0.015 26.3 10.7 82 91-182 14-104 (508)
454 PF13514 AAA_27: AAA domain 25.3 4.1E+02 0.0089 30.5 9.6 26 90-115 742-767 (1111)
455 COG1196 Smc Chromosome segrega 25.3 3.3E+02 0.0072 31.5 9.0 37 134-170 438-474 (1163)
456 COG0576 GrpE Molecular chapero 25.2 4E+02 0.0087 24.8 8.0 42 130-171 89-133 (193)
457 PF06008 Laminin_I: Laminin Do 25.1 3.7E+02 0.0079 25.5 7.9 23 93-115 47-69 (264)
458 PRK08411 flagellin; Reviewed 25.1 2.1E+02 0.0045 31.3 6.9 69 93-170 51-128 (572)
459 PF07716 bZIP_2: Basic region 25.1 1.7E+02 0.0036 21.5 4.5 23 89-111 30-52 (54)
460 PF15011 CK2S: Casein Kinase 2 25.0 5.3E+02 0.011 23.5 11.0 36 135-170 64-99 (168)
461 cd07665 BAR_SNX1 The Bin/Amphi 24.9 4.9E+02 0.011 25.1 8.8 31 83-113 18-51 (234)
462 PF11221 Med21: Subunit 21 of 24.9 4.8E+02 0.01 22.9 11.4 31 85-115 63-93 (144)
463 KOG4460 Nuclear pore complex, 24.8 4.2E+02 0.0092 29.4 9.0 23 145-167 665-687 (741)
464 PF10828 DUF2570: Protein of u 24.8 2.4E+02 0.0052 23.7 6.0 49 91-142 60-110 (110)
465 KOG0837 Transcriptional activa 24.7 78 0.0017 31.6 3.4 24 8-31 201-224 (279)
466 COG5509 Uncharacterized small 24.6 1.2E+02 0.0025 24.3 3.6 26 93-118 27-52 (65)
467 PF09786 CytochromB561_N: Cyto 24.5 1.3E+02 0.0029 32.6 5.4 85 86-170 328-439 (579)
468 TIGR01069 mutS2 MutS2 family p 24.5 9.7E+02 0.021 26.9 12.0 27 89-115 513-539 (771)
469 PRK13588 flagellin B; Provisio 24.5 2.3E+02 0.0049 30.5 7.0 69 93-170 51-128 (514)
470 PF13801 Metal_resist: Heavy-m 24.4 3.4E+02 0.0074 21.1 9.2 42 74-115 35-76 (125)
471 PRK10698 phage shock protein P 24.4 6.1E+02 0.013 23.9 11.4 15 173-187 159-173 (222)
472 PRK14157 heat shock protein Gr 24.3 2.5E+02 0.0053 27.3 6.6 25 89-113 100-124 (227)
473 PF00143 Interferon: Interfero 24.3 3.9E+02 0.0084 24.1 7.6 45 97-147 81-125 (162)
474 PF04124 Dor1: Dor1-like famil 24.3 3.3E+02 0.0071 26.9 7.7 40 131-170 28-67 (338)
475 PF06160 EzrA: Septation ring 24.2 3.2E+02 0.0068 29.2 8.0 38 133-170 363-400 (560)
476 PF08700 Vps51: Vps51/Vps67; 24.2 3.4E+02 0.0073 20.9 8.9 62 93-163 24-86 (87)
477 KOG0933 Structural maintenance 24.2 5.1E+02 0.011 30.7 9.8 93 90-184 412-518 (1174)
478 COG1463 Ttg2C ABC-type transpo 24.1 3.1E+02 0.0067 27.3 7.6 26 132-157 198-223 (359)
479 PRK00286 xseA exodeoxyribonucl 24.1 7.3E+02 0.016 25.2 10.3 24 92-115 321-344 (438)
480 PF04728 LPP: Lipoprotein leuc 24.1 3.5E+02 0.0076 21.1 7.6 23 93-115 5-27 (56)
481 PRK11281 hypothetical protein; 24.1 5.9E+02 0.013 30.0 10.6 85 85-169 228-319 (1113)
482 PF04108 APG17: Autophagy prot 24.0 6.3E+02 0.014 25.9 9.9 61 89-169 334-394 (412)
483 PF14165 YtzH: YtzH-like prote 23.9 78 0.0017 26.6 2.8 34 106-145 27-60 (87)
484 PF08227 DASH_Hsk3: DASH compl 23.9 2.4E+02 0.0053 20.9 5.1 33 140-173 7-39 (45)
485 PF07200 Mod_r: Modifier of ru 23.8 3.6E+02 0.0077 23.2 7.0 63 93-164 29-91 (150)
486 PRK06664 fliD flagellar hook-a 23.8 3.2E+02 0.0069 30.2 8.1 25 142-166 607-631 (661)
487 PRK05771 V-type ATP synthase s 23.8 4.2E+02 0.0092 28.5 8.9 20 151-170 249-268 (646)
488 cd02682 MIT_AAA_Arch MIT: doma 23.7 1.7E+02 0.0036 23.7 4.6 33 87-119 34-75 (75)
489 PF04048 Sec8_exocyst: Sec8 ex 23.7 4.9E+02 0.011 22.7 9.2 70 95-176 37-106 (142)
490 PF07195 FliD_C: Flagellar hoo 23.6 2.3E+02 0.005 26.5 6.2 27 89-115 191-217 (239)
491 PF14523 Syntaxin_2: Syntaxin- 23.6 3.8E+02 0.0081 21.3 8.0 21 98-118 3-23 (102)
492 PRK11085 magnesium/nickel/coba 23.5 4.8E+02 0.01 26.0 8.7 61 89-170 137-197 (316)
493 KOG4559 Uncharacterized conser 23.5 5.1E+02 0.011 22.8 8.0 22 85-106 23-44 (120)
494 smart00283 MA Methyl-accepting 23.5 4.6E+02 0.01 23.1 7.9 72 89-169 191-262 (262)
495 PRK13729 conjugal transfer pil 23.4 3.5E+02 0.0077 29.0 8.1 24 147-170 95-118 (475)
496 PF12252 SidE: Dot/Icm substra 23.4 3E+02 0.0065 32.7 7.9 68 93-167 1270-1347(1439)
497 TIGR03545 conserved hypothetic 23.4 8.4E+02 0.018 26.4 11.0 88 90-196 163-258 (555)
498 smart00076 IFabd Interferon al 23.3 2.7E+02 0.0057 24.1 6.0 51 94-144 46-96 (117)
499 TIGR02231 conserved hypothetic 23.2 2.1E+02 0.0046 29.8 6.4 98 1-119 76-173 (525)
500 cd00427 Ribosomal_L29_HIP Ribo 23.2 1.5E+02 0.0032 22.3 3.9 28 151-178 8-37 (57)
No 1
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.014 Score=60.90 Aligned_cols=8 Identities=38% Similarity=0.887 Sum_probs=3.4
Q ss_pred CCCCCCCC
Q 019120 268 ASPSSLFG 275 (346)
Q Consensus 268 ~~~~~lfg 275 (346)
+-+++|||
T Consensus 47 taTt~~fG 54 (508)
T KOG3091|consen 47 TATTGLFG 54 (508)
T ss_pred Cccccccc
Confidence 33444444
No 2
>PF13634 Nucleoporin_FG: Nucleoporin FG repeat region
Probab=96.09 E-value=0.036 Score=46.93 Aligned_cols=70 Identities=36% Similarity=0.499 Sum_probs=34.6
Q ss_pred CCcccCCC---CCCCCCCCCCCCCCCCCCCCcccCcccccccCCCCCCCCCcCCCCccccccCCCCCCCCCCCCcccCCC
Q 019120 258 SSLFATPA---TSASPSSLFGSGVSPQMSSSSLFAASTLSLFGSTVPSFGSTTSAGASLFSTPFASGAPSGSGASFGAAS 334 (346)
Q Consensus 258 ~~lf~~~~---t~~~~~~lfgs~~s~~~~tp~~g~~~~~~~fg~~~p~f~s~~~~g~slf~~pf~~g~~~~~~~~~~~~~ 334 (346)
.+|||... ++....+|||..-.. -....+.+|||...+. .....+.+||...=.--....+|+.||...
T Consensus 23 ~~lFG~~~~~~~~~~~~~LFG~~~~~------~~~~~~~~LFG~~~~~--~~~~~~~~lFG~~~~~~~~~~~~~lFG~~~ 94 (113)
T PF13634_consen 23 GSLFGSSTPQTTSTSSGSLFGSTSTQ------TQATTTGGLFGSSNNT--QQQPSSGSLFGSTTATQQATPSGGLFGQSQ 94 (113)
T ss_pred CCCCCCCCCCCCCCCCCccCCCCCCC------CCCCCCCcccCCCCCC--CCCCCCCcccCCCCCCCCcCCCCcccCCCC
Confidence 37777654 345666777752111 0123445677765533 222235566643332223455666676554
Q ss_pred C
Q 019120 335 K 335 (346)
Q Consensus 335 ~ 335 (346)
.
T Consensus 95 ~ 95 (113)
T PF13634_consen 95 P 95 (113)
T ss_pred C
Confidence 3
No 3
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=95.62 E-value=0.21 Score=49.18 Aligned_cols=74 Identities=14% Similarity=0.291 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 019120 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAE-SIHQYVETMKTAYLADQRR 171 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva-~LHe~Ve~lKe~YL~~~Rr 171 (346)
-+++|++=+.|+.|.+-++.+|+-++. -.+ ..++++...+..+|.-|.++--+|. ..-++|=.+|..||..||+
T Consensus 117 ~~ElekyeqaCneftthV~nlL~eQsr--~RP---i~~ke~e~m~~~i~~kF~~iq~~lkqstce~vmiLr~r~ldarRK 191 (334)
T KOG0774|consen 117 HNELEKYEQACNEFTTHVMNLLREQSR--TRP---IMPKEIERMVQIISKKFSHIQMQLKQSTCEAVMILRSRFLDARRK 191 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc--cCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666667788888889999986653 223 4599999999999999999976664 3456699999999999984
No 4
>PF13634 Nucleoporin_FG: Nucleoporin FG repeat region
Probab=95.53 E-value=0.056 Score=45.72 Aligned_cols=66 Identities=33% Similarity=0.478 Sum_probs=31.6
Q ss_pred CcccccCCCCCCcccCCCcccCCCC---CCCCCCCCCCCCCCCCCCCcccCcccccccCCCCCCCCCcCCCCccccc
Q 019120 242 LSLFSTPSSAPASSMSSSLFATPAT---SASPSSLFGSGVSPQMSSSSLFAASTLSLFGSTVPSFGSTTSAGASLFS 315 (346)
Q Consensus 242 ~s~f~tpssaps~~~~~~lf~~~~t---~~~~~~lfgs~~s~~~~tp~~g~~~~~~~fg~~~p~f~s~~~~g~slf~ 315 (346)
-+||.............+|||...+ ....++|||..... --..++.+|||.....- ....+.+||.
T Consensus 23 ~~lFG~~~~~~~~~~~~~LFG~~~~~~~~~~~~~LFG~~~~~------~~~~~~~~lFG~~~~~~--~~~~~~~lFG 91 (113)
T PF13634_consen 23 GSLFGSSTPQTTSTSSGSLFGSTSTQTQATTTGGLFGSSNNT------QQQPSSGSLFGSTTATQ--QATPSGGLFG 91 (113)
T ss_pred CCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCcccCCCCCC------CCCCCCCcccCCCCCCC--CcCCCCcccC
Confidence 4566555431222223588886544 36677888853211 11233445666544211 1223556663
No 5
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.13 E-value=0.077 Score=55.56 Aligned_cols=26 Identities=38% Similarity=0.506 Sum_probs=12.5
Q ss_pred CCCCCCCCCCCCCCCCCCcccCcccccccCCCCC
Q 019120 268 ASPSSLFGSGVSPQMSSSSLFAASTLSLFGSTVP 301 (346)
Q Consensus 268 ~~~~~lfgs~~s~~~~tp~~g~~~~~~~fg~~~p 301 (346)
+...++||+ +|.+|++.+ ++||.+.-
T Consensus 33 a~~g~~fgs-------~p~~~taTt-~~fG~~~~ 58 (508)
T KOG3091|consen 33 ASGGGAFGS-------QPTTGTATT-GLFGANQA 58 (508)
T ss_pred ccccccccc-------CCCCCCccc-cccccccC
Confidence 444455554 454544444 35555443
No 6
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=94.15 E-value=0.79 Score=34.08 Aligned_cols=78 Identities=12% Similarity=0.120 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 87 AFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYL 166 (346)
Q Consensus 87 ~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL 166 (346)
+=+.+++..|+.....++..+++|+..+......= .+ ..-......+..++..|-.+...|..+.+.|...++.|.
T Consensus 7 ~~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W-~G---~a~~af~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~~ 82 (86)
T PF06013_consen 7 EQLRAAAQQLQAQADELQSQLQQLESSIDSLQASW-QG---EAADAFQDKFEEWNQAFRQLNEALEELSQALRQAAQNYE 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGB-TS---STSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-Cc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888888888888443211 11 235677889999999999999999999999999999987
Q ss_pred HH
Q 019120 167 AD 168 (346)
Q Consensus 167 ~~ 168 (346)
..
T Consensus 83 ~~ 84 (86)
T PF06013_consen 83 QA 84 (86)
T ss_dssp HH
T ss_pred hh
Confidence 64
No 7
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=93.30 E-value=0.73 Score=39.69 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=27.5
Q ss_pred ccHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhh
Q 019120 85 PSAFLQQTVA----------RFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 85 Ps~YF~qlV~----------~FE~rL~~YRqqIEELE~~L~ 115 (346)
|..|-..++. +++..|......|+||+++|+
T Consensus 10 ~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~ 50 (132)
T PF10392_consen 10 PVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIR 50 (132)
T ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 4568888888 899999999999999999988
No 8
>PF14644 DUF4456: Domain of unknown function (DUF4456)
Probab=92.19 E-value=1.5 Score=40.67 Aligned_cols=96 Identities=22% Similarity=0.262 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQS-LPQVISNVHIFFVHVAAKAESIHQYVETMKTAYL 166 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~-L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL 166 (346)
|..+.-+-.++-+++||.|++.+|..|..... ..... +.....++...--.+.++.+...+..+++|+.+.
T Consensus 41 ~~~qa~~y~~~~~~elR~qv~~l~~~l~~v~~--------lv~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~k~~h~ 112 (208)
T PF14644_consen 41 YQEQADEYHNSCLQELRNQVERLEELLPKVPE--------LVFESLLKRHWQKLCEAMKAIQEEFEQQQKQWEQQKDQHE 112 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455566677788888888772221 11111 1233444444444566666677777778888888
Q ss_pred HHHH-hcCCCCCccchhh---HHHHHHHHH
Q 019120 167 ADQR-RRGDGSDPFLEAD---RRETARQEA 192 (346)
Q Consensus 167 ~~~R-r~GD~~DPFaEad---r~Eaa~q~~ 192 (346)
+.-| .+|++.+-= |.+ .+|.+|+..
T Consensus 113 ~~LrP~LghP~~~~-eL~~L~~~E~~R~~~ 141 (208)
T PF14644_consen 113 QQLRPNLGHPDNRQ-ELESLCEREEKRQKE 141 (208)
T ss_pred HhCCCcCCCCCCHH-HHHHHHHHHHHHHHH
Confidence 8777 688665432 333 344444443
No 9
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=91.23 E-value=5.1 Score=30.19 Aligned_cols=66 Identities=17% Similarity=0.250 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 92 TVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD 168 (346)
Q Consensus 92 lV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~ 168 (346)
...+|+..+..+..||.+.|..|..... . ..+.+|...+. -+-.+-..+...+++|+.+.+.--.+
T Consensus 2 ~~~~f~~~~~~l~~Wl~~~e~~l~~~~~---~----~~~~~~~~~~~----~~~~~~~ei~~~~~~l~~l~~~~~~L 67 (105)
T PF00435_consen 2 QLQQFQQEADELLDWLQETEAKLSSSEP---G----SDLEELEEQLK----KHKELQEEIESRQERLESLNEQAQQL 67 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCTH---S----SSHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC---C----CCHHHHHHHHH----HHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999952221 0 22444444444 33333345566666666666655555
No 10
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=88.59 E-value=4 Score=41.62 Aligned_cols=79 Identities=10% Similarity=0.128 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 87 AFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYL 166 (346)
Q Consensus 87 ~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL 166 (346)
+.+.+.++++++++..++.++++|++.|......... ...+......++.+.+.+..+-.+++.|.++++++++...
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~---~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~ 406 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQ---GKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELE 406 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888899999999999999999999998733321000 1235677888888888899999999999999888887766
Q ss_pred HH
Q 019120 167 AD 168 (346)
Q Consensus 167 ~~ 168 (346)
+.
T Consensus 407 ~~ 408 (451)
T PF03961_consen 407 RS 408 (451)
T ss_pred hh
Confidence 55
No 11
>PF14644 DUF4456: Domain of unknown function (DUF4456)
Probab=88.28 E-value=3.6 Score=38.07 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHH-hcCCCCCccchhhHHHHHHHHHHhhcCCccccCCCC
Q 019120 158 VETMKTAYLADQR-RRGDGSDPFLEADRRETARQEAAAKRVHPTLHLPVN 206 (346)
Q Consensus 158 Ve~lKe~YL~~~R-r~GD~~DPFaEadr~Eaa~q~~aa~Rv~Pt~~lPA~ 206 (346)
++.+++.|...-. .+.+..+.|..--+.-...+.+|...++|++.-|..
T Consensus 75 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~k~~h~~~LrP~LghP~~ 124 (208)
T PF14644_consen 75 FESLLKRHWQKLCEAMKAIQEEFEQQQKQWEQQKDQHEQQLRPNLGHPDN 124 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCCC
Confidence 3344444444222 455555556444455567778888889999998865
No 12
>PF13256 DUF4047: Domain of unknown function (DUF4047)
Probab=85.81 E-value=9.1 Score=33.92 Aligned_cols=72 Identities=13% Similarity=0.188 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 89 LQQTVARFEKYLGEFRQWIEE----LEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTA 164 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEE----LE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~ 164 (346)
|=++|+.++++..+.+++|+. |+..+.. .+.+.|...+....+.+..+++..+.||.--.++++.
T Consensus 25 FPkTI~~L~e~A~qh~~~Il~eye~mk~~~~~-----------~Sie~leq~~~~w~~~rEki~~e~eaLQ~IY~eie~~ 93 (125)
T PF13256_consen 25 FPKTIDTLKEQAEQHKEQILHEYEGMKKKVKV-----------TSIEELEQAIVEWKQGREKIVAEREALQNIYTEIEDY 93 (125)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999864 4444431 2378999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 019120 165 YLADQRR 171 (346)
Q Consensus 165 YL~~~Rr 171 (346)
|+.....
T Consensus 94 ynq~qe~ 100 (125)
T PF13256_consen 94 YNQIQEE 100 (125)
T ss_pred HHHHHHH
Confidence 9998873
No 13
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=85.73 E-value=8.3 Score=30.76 Aligned_cols=64 Identities=19% Similarity=0.360 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKT 163 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe 163 (346)
|+..++.++.+-|.+.++.|+++|+.+. ....++...+++.++.--.+-.+++.+..-++.+++
T Consensus 16 ~l~~~l~~l~~~l~~~~~ti~~l~~~~~------------~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~ 79 (90)
T PF06103_consen 16 FLIKVLKKLKKTLDEVNKTIDTLQEQVD------------PITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVAD 79 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 6677788888888888888888888876 123566777888887777777777776666555554
No 14
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.58 E-value=2.4 Score=41.48 Aligned_cols=60 Identities=20% Similarity=0.168 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 99 YLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLA 167 (346)
Q Consensus 99 rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~ 167 (346)
.+++..++|++||+-+.-.+ -.+++|...++.|++..=.+.+.|+..|+.|+...+.-.+
T Consensus 174 ~ieeR~q~I~~lE~dI~dvN---------~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~k 233 (269)
T KOG0811|consen 174 LIEEREQAIEQLEADIIDVN---------EIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRK 233 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44558889999999988443 2489999999999999999999999999999988775433
No 15
>PRK04406 hypothetical protein; Provisional
Probab=85.08 E-value=2.9 Score=33.53 Aligned_cols=49 Identities=12% Similarity=0.284 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 103 FRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVET 160 (346)
Q Consensus 103 YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~ 160 (346)
..+.|++||-.|.-.. .+..+|-.+|-.|++-.-.|-.+|..|.++++.
T Consensus 9 le~Ri~~LE~~lAfQE---------~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 9 LEERINDLECQLAFQE---------QTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666655221 234566666767766666666666666665544
No 16
>smart00150 SPEC Spectrin repeats.
Probab=84.25 E-value=15 Score=27.53 Aligned_cols=65 Identities=20% Similarity=0.251 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 95 RFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 95 ~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
+|++.+.....||++.|..|..... + ..+..+...++ .+-.+-..+...++.|+.+....-.+..
T Consensus 2 ~f~~~~~~l~~Wl~~~e~~l~~~~~------~-~d~~~~~~~~~----~~~~~~~e~~~~~~~v~~~~~~~~~L~~ 66 (101)
T smart00150 2 QFLRDADELEAWLSEKEALLASEDL------G-KDLESVEALLK----KHEALEAELEAHEERVEALNELGEQLIE 66 (101)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCCC------C-CCHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5889999999999999987763221 1 12333333333 3333334556666666666665444444
No 17
>PRK13879 conjugal transfer protein TrbJ; Provisional
Probab=83.52 E-value=9.6 Score=37.06 Aligned_cols=38 Identities=18% Similarity=0.383 Sum_probs=30.7
Q ss_pred ccchhhccCCCCCccHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 019120 72 VPVFDFYRGLPKKPSAFL------QQTVARFEKYLGEFRQWIEELEQLILLD 117 (346)
Q Consensus 72 ~pv~Dfys~~p~~Ps~YF------~qlV~~FE~rL~~YRqqIEELE~~L~s~ 117 (346)
.||+| |..|. .+.|.++.++++.|+.+|.++|+.++..
T Consensus 28 ipV~D--------~an~aqni~~a~~~v~q~~~Qi~Qlq~Qiqqy~nql~Nl 71 (253)
T PRK13879 28 IPVID--------GTNLSQNIMTAIESVAQTLKQIEQYQTQLQQYENMLQNT 71 (253)
T ss_pred CCeee--------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 48988 45664 4578888999999999999999999833
No 18
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=83.44 E-value=10 Score=35.64 Aligned_cols=90 Identities=11% Similarity=0.067 Sum_probs=58.4
Q ss_pred chhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHH
Q 019120 74 VFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAES 153 (346)
Q Consensus 74 v~Dfys~~p~~Ps~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~ 153 (346)
-+|.|..+..--..-+-.-+..|+++++..++.+-.+|.-|+..+. ..+...|+..++.+..-.--.--||..
T Consensus 69 ~QDqF~~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s-------~Lt~eemQe~i~~L~kev~~~~erl~~ 141 (201)
T KOG4603|consen 69 DQDQFDMVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSS-------ALTTEEMQEEIQELKKEVAGYRERLKN 141 (201)
T ss_pred cHHhhcCCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688887655556667777899999999999999999999884432 134455555555544443333334444
Q ss_pred HHH-----------HHHHHHHHHHHHHH
Q 019120 154 IHQ-----------YVETMKTAYLADQR 170 (346)
Q Consensus 154 LHe-----------~Ve~lKe~YL~~~R 170 (346)
|.+ +|.++.+.|.+.||
T Consensus 142 ~k~g~~~vtpedk~~v~~~y~~~~~~wr 169 (201)
T KOG4603|consen 142 IKAGTNHVTPEDKEQVYREYQKYCKEWR 169 (201)
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 432 35555666777776
No 19
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=83.04 E-value=32 Score=31.82 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLILL 116 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~s 116 (346)
..++|.++..++.+||+++.|||++|..
T Consensus 14 qa~Lv~~LQ~KV~qYr~rc~ele~~l~~ 41 (182)
T PF15035_consen 14 QAQLVQRLQAKVLQYRKRCAELEQQLSA 41 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3578999999999999999999999953
No 20
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=80.81 E-value=9.2 Score=32.55 Aligned_cols=49 Identities=20% Similarity=0.269 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCc-cccccHHHHHHHHHHHHHHH
Q 019120 98 KYLGEFRQWIEELEQLILLDPDRNSSSHGS-SLLQSLPQVISNVHIFFVHV 147 (346)
Q Consensus 98 ~rL~~YRqqIEELE~~L~s~s~~~~S~~gs-~tpQ~L~~~L~~~hq~FvaL 147 (346)
+=+..++.+||-..+-|++.+.+..| +.. .+.|.|=..|.++|--.+..
T Consensus 2 ef~~~l~~~v~if~nRmksns~RGrs-IanDsaVqsLF~~lt~mH~~LL~~ 51 (96)
T PF12210_consen 2 EFCNTLRSSVEIFVNRMKSNSSRGRS-IANDSAVQSLFQTLTAMHPQLLKY 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT---GGG-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhcCCC-CcccHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888888877665443 221 36677777777777666544
No 21
>PRK04325 hypothetical protein; Provisional
Probab=80.20 E-value=13 Score=29.55 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=29.8
Q ss_pred HHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 107 IEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETM 161 (346)
Q Consensus 107 IEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~l 161 (346)
|++||-.|.=.. .+.++|-.+|-.|+.-.-.|..+|..|+++++++
T Consensus 11 i~~LE~klAfQE---------~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 11 ITELEIQLAFQE---------DLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677776665221 3456677777777777777777777777766554
No 22
>PRK10963 hypothetical protein; Provisional
Probab=79.29 E-value=3.7 Score=38.32 Aligned_cols=64 Identities=13% Similarity=0.061 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 019120 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHV--AAKAESIHQYVETMKTAY 165 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaL--AArva~LHe~Ve~lKe~Y 165 (346)
|.=.|-+|+..|+.|++||..|...-. ...+-..+.+++|+.-++| |..++.+.+.++.+++.|
T Consensus 39 VSL~ErQ~~~LR~r~~~Le~~l~~Li~---------~A~~Ne~l~~~~~~l~l~Ll~a~~~~~l~~~L~~~~~~f 104 (223)
T PRK10963 39 VSLVEWQMARQRNHIHVLEEEMTLLME---------QAIANEDLFYRLLPLQSRLAAADSLQDMLMRLHRWARDL 104 (223)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Confidence 666788999999999999998882221 1345567778888877777 344555555555444444
No 23
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=78.77 E-value=25 Score=31.13 Aligned_cols=60 Identities=13% Similarity=0.183 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 90 QQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQ 156 (346)
Q Consensus 90 ~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe 156 (346)
..-+.+++++|...++.+.+|+..|..... ..+-.+|...+..+-+-.-.|-.||+.|+.
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~-------~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSS-------EPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334777777777777777777777774442 134677888888888888888888888875
No 24
>TIGR02780 TrbJ_Ti P-type conjugative transfer protein TrbJ. The TrbJ protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbJ is a homolog of the F-type TraE protein (which is believed to be an inner membrane pore-forming protein, TIGR02761) as well as the vir system VirB5 protein.
Probab=78.13 E-value=19 Score=34.32 Aligned_cols=82 Identities=11% Similarity=0.176 Sum_probs=54.4
Q ss_pred ccchhhccCCCCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHH
Q 019120 72 VPVFDFYRGLPKKPSAFLQQ------TVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFV 145 (346)
Q Consensus 72 ~pv~Dfys~~p~~Ps~YF~q------lV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~Fv 145 (346)
+||+| |..|.+. .|++..+++++|+.+|..+|+.++.... .+..+-.-+...-.-+.
T Consensus 26 i~V~D--------~an~~q~i~~aa~~~~q~~~Qi~qlqnQiq~y~nql~n~~~---------L~~~~~~~~~~~l~~l~ 88 (246)
T TIGR02780 26 VTCIN--------CANFSQQILTAAESVEQLNNQIQQLQNQIQRYENQLKNTMS---------LPANIWNRLESSLQKLT 88 (246)
T ss_pred ceeec--------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHH
Confidence 47866 3456664 4888889999999999999999984332 11222233333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 146 HVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 146 aLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
.|-.+...|-..+.++.+.|.....
T Consensus 89 ~L~~q~q~l~~~~~~~~~~f~~~y~ 113 (246)
T TIGR02780 89 NIISQAQALAYDIANLDDIFSQLYQ 113 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 6667777788888888888876554
No 25
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=77.94 E-value=14 Score=28.40 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMK 162 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lK 162 (346)
+..-+.++++++..+...|+-++..|...+ .- .-+|.+|...-+.- +..+-.+++.|.++++.||
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~--F~----~kAP~eVve~er~k---l~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNEN--FV----EKAPEEVVEKEREK---LEELEEELEKLEEALEQLK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTT--HH----HHS-CCHHHHHHHH---HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcc--cc----ccCCHHHHHHHHHH---HHHHHHHHHHHHHHHHhcc
Confidence 345688999999999999999999987222 00 13566665544443 3344456677777777664
No 26
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=76.61 E-value=38 Score=27.27 Aligned_cols=67 Identities=12% Similarity=0.090 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTA 164 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~ 164 (346)
|...|++....|..++..|++|++....... .. +....+...|+.+-+-... ....|...|++++..
T Consensus 6 F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~--~~----~~~~~~~~~l~~~~~~~~~---~~~~i~~~lk~l~~~ 72 (117)
T smart00503 6 FFEKVEEIRANIQKISQNVAELQKLHEELLT--PP----DADKELREKLERLIDDIKR---LAKEIRAKLKELEKE 72 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cC----chhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence 4558999999999999999999998773321 00 1123444444444444333 344455555555443
No 27
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=76.07 E-value=7.9 Score=30.18 Aligned_cols=66 Identities=12% Similarity=0.206 Sum_probs=36.0
Q ss_pred ccHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 85 PSAFLQQT-----VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVE 159 (346)
Q Consensus 85 Ps~YF~ql-----V~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve 159 (346)
|-.||.++ +.++.+....+++.|++.+..|+ ..+-+=|.-||..+-.|..|...+.
T Consensus 8 ~~~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr-------------------~~V~~nY~~fI~as~~I~~m~~~~~ 68 (87)
T PF08700_consen 8 VDEYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELR-------------------KLVYENYRDFIEASDEISSMENDLS 68 (87)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34566543 34444444445555555554444 4455556666666666666666666
Q ss_pred HHHHHHHHHH
Q 019120 160 TMKTAYLADQ 169 (346)
Q Consensus 160 ~lKe~YL~~~ 169 (346)
.+++.--++.
T Consensus 69 ~l~~~l~~l~ 78 (87)
T PF08700_consen 69 ELRNLLSELQ 78 (87)
T ss_pred HHHHHHHHHH
Confidence 6665544433
No 28
>PRK00846 hypothetical protein; Provisional
Probab=75.75 E-value=9.8 Score=31.02 Aligned_cols=52 Identities=12% Similarity=0.185 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 102 EFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMK 162 (346)
Q Consensus 102 ~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lK 162 (346)
...+.|++||-.|.-.. .+.+.|-.+|-.+.+..-.|..+|..|.++++++.
T Consensus 10 ~le~Ri~~LE~rlAfQe---------~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 10 ALEARLVELETRLSFQE---------QALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34466777777766222 23445555555555555555555555555544443
No 29
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=75.62 E-value=13 Score=37.51 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLILLDP 118 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~s~s 118 (346)
..+.++++++....|++||||||.|+-.+.
T Consensus 293 vk~vv~el~k~~~~f~~qleELeehv~lC~ 322 (336)
T PF05055_consen 293 VKEVVKELKKNVESFTEQLEELEEHVYLCF 322 (336)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999987543
No 30
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=75.19 E-value=23 Score=29.79 Aligned_cols=67 Identities=12% Similarity=0.230 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 91 QTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTA 164 (346)
Q Consensus 91 qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~ 164 (346)
+=+++.++++....+.+..||..|..... ......|...|..+.--+-.|.+++..|...++-+=|.
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt-------~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHLPT-------RDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888889999999999885543 13455666666666666666666666665555544443
No 31
>PRK04863 mukB cell division protein MukB; Provisional
Probab=73.67 E-value=15 Score=43.62 Aligned_cols=92 Identities=13% Similarity=0.086 Sum_probs=68.0
Q ss_pred ccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-------------CCCCCCccccccHHHHHHHHHHHH
Q 019120 78 YRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDR-------------NSSSHGSSLLQSLPQVISNVHIFF 144 (346)
Q Consensus 78 ys~~p~~Ps~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~-------------~~S~~gs~tpQ~L~~~L~~~hq~F 144 (346)
+-+++.+..+-+...+++|+++|.++..++.++|+.|...... ..+-+......+-..-+...|...
T Consensus 429 ~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~ 508 (1486)
T PRK04863 429 LCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQ 508 (1486)
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHH
Confidence 5667788889999999999999999999999999976632210 001111123445556777888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 145 VHVAAKAESIHQYVETMKTAYLADQ 169 (346)
Q Consensus 145 vaLAArva~LHe~Ve~lKe~YL~~~ 169 (346)
.++|+++..|..++.+++..+-..+
T Consensus 509 ~~~~~~~~~~~~~~~~l~~~~~~q~ 533 (1486)
T PRK04863 509 RHLAEQLQQLRMRLSELEQRLRQQQ 533 (1486)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988544433
No 32
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=73.08 E-value=33 Score=31.84 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 87 AFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYL 166 (346)
Q Consensus 87 ~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL 166 (346)
..|.+|-+.-++-..+.+..|.+|++.+. .|+.++.-.-.|=.|...|+.++++.++.||
T Consensus 109 ~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~--------------------~le~~~~~~k~LrnKa~~L~~eL~~F~~~yL 168 (171)
T PF04799_consen 109 STFARLCQQVDQTKNELEDEIKQLEKEIQ--------------------RLEEIQSKSKTLRNKANWLESELERFQEQYL 168 (171)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666655555555566666666666655 2333333344455688888999999999998
Q ss_pred H
Q 019120 167 A 167 (346)
Q Consensus 167 ~ 167 (346)
.
T Consensus 169 ~ 169 (171)
T PF04799_consen 169 Q 169 (171)
T ss_dssp -
T ss_pred c
Confidence 6
No 33
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=72.96 E-value=33 Score=35.09 Aligned_cols=64 Identities=17% Similarity=0.246 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-cCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 95 RFEKYLGEFRQWIEELEQLIL-LDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKT 163 (346)
Q Consensus 95 ~FE~rL~~YRqqIEELE~~L~-s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe 163 (346)
++++.|....+|..-+|+.|. ..-+++. -.++.|...|+.-|+-++.++.++.++++++++.+.
T Consensus 218 ~~~~~L~~~a~QfRaIQrrlL~r~kd~~p-----~~l~~L~~LLe~ty~~l~~~~d~~~~~~~~l~~a~~ 282 (377)
T PF14728_consen 218 ELEEELDERAQQFRAIQRRLLTRFKDKNP-----APLDNLDTLLEGTYRQLIALADEIEELQANLKRAGA 282 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCC-----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555555556666666 2222221 136889999999999999999999999999887765
No 34
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=72.60 E-value=37 Score=33.20 Aligned_cols=76 Identities=11% Similarity=0.200 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019120 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRR 172 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~Rr~ 172 (346)
++++++.+..++..++.+++.+..... . ...-......+.......-.++..|.+..+++++.|-..+++.
T Consensus 276 ~~~l~~~i~~l~~~~~~~~~~l~~~~~-~--------~~~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yf 346 (370)
T PF02181_consen 276 LDELEQDIKELEKGLEKIKKELEAIEK-D--------EEDDDKFKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYF 346 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCT-T--------SSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc-c--------ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777788888888888888774443 0 0111233444455555677899999999999999999999988
Q ss_pred CCCCC
Q 019120 173 GDGSD 177 (346)
Q Consensus 173 GD~~D 177 (346)
|+..+
T Consensus 347 ge~~~ 351 (370)
T PF02181_consen 347 GEDPK 351 (370)
T ss_dssp T--TT
T ss_pred CCCCC
Confidence 86554
No 35
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=72.39 E-value=15 Score=36.75 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=36.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019120 129 LLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRR 171 (346)
Q Consensus 129 tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~Rr 171 (346)
+.|.|..-++.....+..||...+.|.++|++-|-.|=..|+|
T Consensus 113 aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkR 155 (338)
T KOG3647|consen 113 AIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKR 155 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777788888889999999999999999999988877763
No 36
>PRK02119 hypothetical protein; Provisional
Probab=71.60 E-value=35 Score=27.20 Aligned_cols=31 Identities=10% Similarity=0.183 Sum_probs=17.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 130 LQSLPQVISNVHIFFVHVAAKAESIHQYVET 160 (346)
Q Consensus 130 pQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~ 160 (346)
+.+|-.+|-.|.+-.-.|..+|..|.++++.
T Consensus 25 ie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 25 LEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455556666666555565566666555544
No 37
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=71.56 E-value=42 Score=33.55 Aligned_cols=72 Identities=14% Similarity=0.157 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLA 167 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~ 167 (346)
||++-.++=-+.-.+|-..|++|=..|...+ ...|...+.++.+.....=..|+.++.+|+++++.+.+
T Consensus 38 ~~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms-----------~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~ 106 (301)
T PF06120_consen 38 YFYQNAEQARQEAIEFADSLDELKEKLKEMS-----------STQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKN 106 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666678888889999999999998888554 35778888888888888888889999999999988876
Q ss_pred HHH
Q 019120 168 DQR 170 (346)
Q Consensus 168 ~~R 170 (346)
|.+
T Consensus 107 y~~ 109 (301)
T PF06120_consen 107 YQQ 109 (301)
T ss_pred HHH
Confidence 655
No 38
>PRK10884 SH3 domain-containing protein; Provisional
Probab=71.49 E-value=68 Score=30.22 Aligned_cols=63 Identities=5% Similarity=0.110 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 90 QQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTA 164 (346)
Q Consensus 90 ~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~ 164 (346)
...+.++|++++..+.+++++..... ..-+++...+....+....|-.+-++|++++++++..
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~------------~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~ 154 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWN------------QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKK 154 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666655555554322 1134566666666666555656666666655555544
No 39
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=71.01 E-value=47 Score=31.65 Aligned_cols=29 Identities=21% Similarity=0.333 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLILL 116 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~s 116 (346)
.+..+|++|...+..+...|++||+.+..
T Consensus 139 il~~ivd~~~~~l~~l~~~~~~le~~l~~ 167 (318)
T TIGR00383 139 IFDAIIDSYFPLLENIEDELEELEDEIIS 167 (318)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHhc
Confidence 45666778899999999999999998763
No 40
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=70.77 E-value=64 Score=27.22 Aligned_cols=26 Identities=23% Similarity=0.486 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 019120 93 VARFEKYLGEFRQWIEELEQLILLDP 118 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s~s 118 (346)
..+|.+.+.....||++.|..|....
T Consensus 2 ~~~f~~~~~~l~~Wl~~~e~~l~~~~ 27 (213)
T cd00176 2 LQQFLRDADELEAWLSEKEELLSSTD 27 (213)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCcc
Confidence 46899999999999999999987443
No 41
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=70.73 E-value=24 Score=37.76 Aligned_cols=47 Identities=9% Similarity=0.114 Sum_probs=26.3
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHH
Q 019120 88 FLQQTVARF--EKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVH 146 (346)
Q Consensus 88 YF~qlV~~F--E~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~Fva 146 (346)
++.+.+.++ +++++.|+++||+|+.. . . ..|.+|....+.+.+..-.
T Consensus 179 ~w~~~~~~Lp~~~~~~~yk~~v~~i~~~----~--i------k~p~~i~~~~~e~d~lk~e 227 (555)
T TIGR03545 179 KWKKRKKDLPNKQDLEEYKKRLEAIKKK----D--I------KNPLELQKIKEEFDKLKKE 227 (555)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHhc----c--C------CCHHHHHHHHHHHHHHHHH
Confidence 444444455 45677777777777773 1 1 2356666555555544433
No 42
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=70.22 E-value=23 Score=35.35 Aligned_cols=68 Identities=18% Similarity=0.254 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVI--SNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L--~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
+..=|+.|++|..+|.+|-.+++ .+...|..+| -.+|..|..|-..|+...++|++.-+. |..|+
T Consensus 138 lA~kEQEmqe~~sqi~~lK~qq~------------Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~Qne-lsAwk 204 (330)
T KOG2991|consen 138 LATKEQEMQECTSQIQYLKQQQQ------------PSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQNE-LSAWK 204 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC------------cHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhh-hheee
Confidence 34458889999999999888766 1123444444 368999999999999999998887653 44555
Q ss_pred hcC
Q 019120 171 RRG 173 (346)
Q Consensus 171 r~G 173 (346)
..-
T Consensus 205 FTP 207 (330)
T KOG2991|consen 205 FTP 207 (330)
T ss_pred ecC
Confidence 433
No 43
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=69.89 E-value=69 Score=30.57 Aligned_cols=51 Identities=14% Similarity=0.095 Sum_probs=32.7
Q ss_pred cHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCccchh
Q 019120 132 SLPQVISNVHIFFV---HVAAKAESIHQYVETMKTAYLADQR-RRGDGSDPFLEA 182 (346)
Q Consensus 132 ~L~~~L~~~hq~Fv---aLAArva~LHe~Ve~lKe~YL~~~R-r~GD~~DPFaEa 182 (346)
+|...-+++++-|- ..|..|..=-+.|+++-+.|...|+ .+.-++||=+..
T Consensus 61 dLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~EWe~EL~~Y~~~sLR~ 115 (201)
T PF11172_consen 61 DLEDKYNALNDEYESSEDAAEEVSDRIDAVEDVADALFDEWEQELDQYSNASLRR 115 (201)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 45555555555555 4455554444557778889999998 678888884433
No 44
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=69.77 E-value=14 Score=34.62 Aligned_cols=29 Identities=24% Similarity=0.450 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHhh
Q 019120 87 AFLQQTVARFEKY---LGEFRQWIEELEQLIL 115 (346)
Q Consensus 87 ~YF~qlV~~FE~r---L~~YRqqIEELE~~L~ 115 (346)
+-|..++.+||.. ++.||.+++|||.+|.
T Consensus 98 ~L~~~T~~Elq~mr~~ln~FR~qm~dlE~~l~ 129 (179)
T PF14723_consen 98 ELYSCTVQELQQMRRSLNSFREQMMDLELHLM 129 (179)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344568888764 7789999999999987
No 45
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=69.71 E-value=23 Score=39.02 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=23.1
Q ss_pred cHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcC
Q 019120 86 SAFLQQTVARFEKY-LGEFRQWIEELEQLILLD 117 (346)
Q Consensus 86 s~YF~qlV~~FE~r-L~~YRqqIEELE~~L~s~ 117 (346)
.+||.+.++.|.++ +..-.+--+|||+++...
T Consensus 538 l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~L 570 (717)
T PF10168_consen 538 LELLSQATKVLREEYIEKQDLAREEIQRRVKLL 570 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888554 666666678888887733
No 46
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=69.47 E-value=47 Score=29.72 Aligned_cols=60 Identities=15% Similarity=0.253 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQ 169 (346)
Q Consensus 94 ~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~ 169 (346)
.+|.++|..|+..+++|-..+. ++-..|..+.+-|..|-.+...||+.-+++=+.+..+.
T Consensus 3 ~~y~~~L~~~~~~~~~ll~~~~----------------~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~ 62 (157)
T PF04136_consen 3 RQYLDYLQQYREECDQLLDQTD----------------EILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLE 62 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3455666666665555443322 44556777777777888888888877666655554444
No 47
>PRK14139 heat shock protein GrpE; Provisional
Probab=69.41 E-value=26 Score=32.68 Aligned_cols=82 Identities=12% Similarity=0.083 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLA 167 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~ 167 (346)
-|.++..+||++-.+..+.++++.+.-.. ....+|-.++.++.....+.-..+..|++.|+....++++
T Consensus 54 ~~lR~~AefeN~rKR~~kE~e~~~~~a~~-----------~~~~~LLpv~DnLerAl~~~~~~~~~l~~Gv~mi~k~l~~ 122 (185)
T PRK14139 54 SFLRAKAETENVRRRAQEDVAKAHKFAIE-----------SFAESLLPVKDSLEAALADESGDLEKLREGVELTLKQLTS 122 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhHHhHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666665554331 2244555566666555443334467788899999999988
Q ss_pred HHHhcC-----CCCCccc
Q 019120 168 DQRRRG-----DGSDPFL 180 (346)
Q Consensus 168 ~~Rr~G-----D~~DPFa 180 (346)
.-.++| -..++|+
T Consensus 123 vL~k~Gv~~I~~~G~~FD 140 (185)
T PRK14139 123 AFEKGRVVEINPVGEKFD 140 (185)
T ss_pred HHHHCCCceeCCCCCCCC
Confidence 776443 2346773
No 48
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=69.40 E-value=60 Score=28.88 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 91 QTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 91 qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
+.++++++++..+++.+.+++.++.
T Consensus 88 ~~l~~l~~el~~l~~~~~~~~~~l~ 112 (191)
T PF04156_consen 88 QQLQQLQEELDQLQERIQELESELE 112 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444
No 49
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=68.87 E-value=34 Score=31.44 Aligned_cols=63 Identities=14% Similarity=0.246 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 92 TVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAY 165 (346)
Q Consensus 92 lV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~Y 165 (346)
..+-+|++++...++|+|||.+|....+.-.+ - . |-....=..-++.+|+.|.++|.++-..|
T Consensus 86 R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvs------Y----q-ll~hr~e~ee~~~~l~~le~~~~~~e~~~ 148 (175)
T PRK13182 86 DFEQLEAQLNTITRRLDELERQLQQKADDVVS------Y----Q-LLQHRREMEEMLERLQKLEARLKKLEPIY 148 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------H----H-HHHhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35678888888888899998888855431111 1 1 11122233456667777777766644433
No 50
>PRK02793 phi X174 lysis protein; Provisional
Probab=68.84 E-value=34 Score=27.11 Aligned_cols=31 Identities=3% Similarity=0.155 Sum_probs=15.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 130 LQSLPQVISNVHIFFVHVAAKAESIHQYVET 160 (346)
Q Consensus 130 pQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~ 160 (346)
..+|-.+|-.|.+-.-.|..+|..|.+++++
T Consensus 24 Ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 24 IEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555444554555555554444
No 51
>PRK09039 hypothetical protein; Validated
Probab=68.19 E-value=36 Score=34.08 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLILLDP 118 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s 118 (346)
||.+.|..+++.|.....+|.+|=..|.+..
T Consensus 43 fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~ 73 (343)
T PRK09039 43 FLSREISGKDSALDRLNSQIAELADLLSLER 73 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999999988776655443
No 52
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=67.76 E-value=49 Score=30.11 Aligned_cols=30 Identities=0% Similarity=0.007 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 135 QVISNVHIFFVHVAAKAESIHQYVETMKTA 164 (346)
Q Consensus 135 ~~L~~~hq~FvaLAArva~LHe~Ve~lKe~ 164 (346)
..++.+++-.++|=-++-.+-+++.++++.
T Consensus 144 k~~e~l~DE~~~L~l~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 144 KANEILQDELQALQLQLNMLEEKLRKLEEE 173 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433333333334444333
No 53
>PRK14143 heat shock protein GrpE; Provisional
Probab=67.73 E-value=32 Score=33.24 Aligned_cols=80 Identities=15% Similarity=0.204 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA---AKAESIHQYVETMKTAY 165 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLA---Arva~LHe~Ve~lKe~Y 165 (346)
|.++..+||++-++.++.++++-+.... ..+.+|-.++.++...+.++. .....|++.++.+..++
T Consensus 90 ~lR~~AdfeN~RKR~~kE~e~~~~~a~~-----------~~~~~lLpV~DnLerAl~~~~~~~~~~~~l~~Gve~i~k~l 158 (238)
T PRK14143 90 YMRIAADFDNFRKRTSREQEDLRLQLKC-----------NTLSEILPVVDNFERARQQLKPEGEEAQALHRSYQGLYKQL 158 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhHHHHHHhcccccchhHHHHHHHHHHHHHHH
Confidence 3455555555555555555554443220 234566667777776665442 23467888888888888
Q ss_pred HHHHHhcC-----CCCCcc
Q 019120 166 LADQRRRG-----DGSDPF 179 (346)
Q Consensus 166 L~~~Rr~G-----D~~DPF 179 (346)
++.-.++| -.-++|
T Consensus 159 ~~~L~k~GV~~i~~~G~~F 177 (238)
T PRK14143 159 VDVLKRLGVSPMRVVGQEF 177 (238)
T ss_pred HHHHHHCCCeeeCCCCCCC
Confidence 88666433 234677
No 54
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=67.70 E-value=88 Score=28.65 Aligned_cols=29 Identities=28% Similarity=0.380 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 87 AFLQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 87 ~YF~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
..+..++++|.+.+..+...++++|..+.
T Consensus 114 ~il~~~~~~~~~~l~~l~~~l~~le~~~~ 142 (292)
T PF01544_consen 114 AILDEIVDDYFEVLEELEDELDELEDELD 142 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 36788899999999999999999999994
No 55
>PRK12718 flgL flagellar hook-associated protein FlgL; Provisional
Probab=67.34 E-value=24 Score=37.53 Aligned_cols=68 Identities=12% Similarity=0.095 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q 019120 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHV------AAKAESIHQYVETMKTAYL 166 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaL------AArva~LHe~Ve~lKe~YL 166 (346)
+++...++.+|++.|+..+..|.... ..+..+..+|.++++..|.. +...+.|-++|+.++++.+
T Consensus 52 l~q~~~~~eQY~~Ni~~A~~~L~~~E---------stL~sv~~~L~rirel~VqA~Ngt~s~~dR~aia~El~~l~~qL~ 122 (510)
T PRK12718 52 VSQTSSMNSNYDANRKQAEQALGAQT---------NTLQSVVKNMQEMLKRVVEAGNGTMSDADRQALVIALKGAREELV 122 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44556777888888888888887433 34778899999999998876 4577888888988888876
Q ss_pred HHH
Q 019120 167 ADQ 169 (346)
Q Consensus 167 ~~~ 169 (346)
.+-
T Consensus 123 ~la 125 (510)
T PRK12718 123 GLA 125 (510)
T ss_pred HHH
Confidence 654
No 56
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=66.99 E-value=56 Score=29.06 Aligned_cols=24 Identities=13% Similarity=0.378 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 92 TVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 92 lV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
-+.+.++++.++.+.++++++.+.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~ 105 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQ 105 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666655
No 57
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=66.76 E-value=34 Score=26.66 Aligned_cols=7 Identities=71% Similarity=0.705 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 019120 107 IEELEQL 113 (346)
Q Consensus 107 IEELE~~ 113 (346)
|++||-.
T Consensus 6 i~~LE~~ 12 (69)
T PF04102_consen 6 IEELEIK 12 (69)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344433
No 58
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=66.54 E-value=66 Score=25.80 Aligned_cols=72 Identities=14% Similarity=0.149 Sum_probs=44.6
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 84 KPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSL--PQVISNVHIFFVHVAAKAESIHQYVETM 161 (346)
Q Consensus 84 ~Ps~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L--~~~L~~~hq~FvaLAArva~LHe~Ve~l 161 (346)
-|.++|.++...+.+-+...+.-.+|+|++++..-...-+ =-+| ..-.+.|.+.+..+-.||+.|..+|..+
T Consensus 3 ~~~~~~d~~~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~------kldlVtREEFd~q~~~L~~~r~kl~~LEarl~~L 76 (79)
T PF04380_consen 3 DPNKIFDDLAKQISEALPAAQGPREEIEKNIRARLQSALS------KLDLVTREEFDAQKAVLARTREKLEALEARLAAL 76 (79)
T ss_pred CchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH------HCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4668999999999999999988999999998822210000 0011 2344445555555555555555555554
No 59
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=66.28 E-value=45 Score=28.94 Aligned_cols=69 Identities=14% Similarity=0.270 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
+++++..+..++.+++++|+.+...-. -...+...+..+....-..-..++.+.-.++..+.+|....|
T Consensus 68 ~~~l~~~~~rL~~~~~~~ere~~~~~~---------~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~r 136 (151)
T PF11559_consen 68 IERLQNDVERLKEQLEELERELASAEE---------KERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELR 136 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555666666665552211 123455555555555556666666666666667777776555
No 60
>PRK14147 heat shock protein GrpE; Provisional
Probab=65.96 E-value=35 Score=31.30 Aligned_cols=81 Identities=15% Similarity=0.136 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLA 167 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~ 167 (346)
-|.++..+||++-.+..+.++++.+.-.. ....+|-.++.++-...-+....+..|++.|+....++++
T Consensus 40 ~~lR~~Ad~eN~rkR~~kE~e~~~~~a~~-----------~~~~~lLpv~DnlerAl~~~~~~~~~l~~Gv~mi~k~l~~ 108 (172)
T PRK14147 40 DALRERADLENQRKRIARDVEQARKFANE-----------KLLGELLPVFDSLDAGLTAAGTEPSPLRDGLELTYKQLLK 108 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhhhhHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 44566777777777777776665554320 2345556666666666544444567789999999999999
Q ss_pred HHHhcC-----CCCCcc
Q 019120 168 DQRRRG-----DGSDPF 179 (346)
Q Consensus 168 ~~Rr~G-----D~~DPF 179 (346)
.-.++| -.-++|
T Consensus 109 ~L~~~Gv~~i~~~G~~F 125 (172)
T PRK14147 109 VAADNGLTLLDPVGQPF 125 (172)
T ss_pred HHHHCCCEEeCCCCCCC
Confidence 776544 334677
No 61
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=65.91 E-value=58 Score=33.61 Aligned_cols=89 Identities=18% Similarity=0.153 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019120 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRR 172 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~Rr~ 172 (346)
+.++|.++..+.++|++|+..|...++++ -..-|-.--+|.|.||++=-.|...|+..-..--....++
T Consensus 101 l~~~e~~~~~l~~q~~~Lq~~~~~ls~~~-----------~~dWlLaEaeyLlrlA~qkL~l~~Dv~tA~alLksAD~rL 169 (390)
T PRK10920 101 LDQANRQQAALAKQLDELQQKVATISGSD-----------AKTWLLAQADFLVKLAGRKLWSDQDVTTAAALLKSADASL 169 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------hhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34444455555555555555555333211 0123333345566666655555555555444444444455
Q ss_pred CCCCCccchhhHHHHHHHHH
Q 019120 173 GDGSDPFLEADRRETARQEA 192 (346)
Q Consensus 173 GD~~DPFaEadr~Eaa~q~~ 192 (346)
.+..||=+-.=|+-.+++-+
T Consensus 170 a~~~dP~l~~lR~Aia~DI~ 189 (390)
T PRK10920 170 ADMNDPSLITVRRAITDDIA 189 (390)
T ss_pred HhcCCcchHHHHHHHHHHHH
Confidence 66677765555555554433
No 62
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=65.87 E-value=22 Score=37.71 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 019120 93 VARFEKYLGEFRQWIEELEQLILLDP 118 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s~s 118 (346)
++.++++|+.+++++.|||..|.+..
T Consensus 27 i~~L~~ql~aLq~~v~eL~~~laa~~ 52 (514)
T PF11336_consen 27 IKALQAQLQALQDQVNELRAKLAAKP 52 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 78999999999999999999998554
No 63
>PRK11637 AmiB activator; Provisional
Probab=65.85 E-value=44 Score=33.80 Aligned_cols=39 Identities=8% Similarity=0.055 Sum_probs=20.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 132 SLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 132 ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
.+...|..+++-.-.+-.+++.+.++|+..++.+-..-|
T Consensus 93 ~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlr 131 (428)
T PRK11637 93 ETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555566666666666555544333
No 64
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=65.77 E-value=38 Score=28.16 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 019120 91 QTVARFEKYLGEFRQWIEELEQLILLD 117 (346)
Q Consensus 91 qlV~~FE~rL~~YRqqIEELE~~L~s~ 117 (346)
.=|++.|+++.+|+..+|.+|..|+..
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~ 31 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRR 31 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHccc
Confidence 348999999999999999999999844
No 65
>PRK09039 hypothetical protein; Validated
Probab=65.49 E-value=43 Score=33.49 Aligned_cols=68 Identities=12% Similarity=0.119 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-hc
Q 019120 98 KYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIH----QYVETMKTAYLADQR-RR 172 (346)
Q Consensus 98 ~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LH----e~Ve~lKe~YL~~~R-r~ 172 (346)
-+++..++||+.|+.+|.... ..+.++..-...++..+..|-.+|+..- .+++.+|..|....| ..
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le---------~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~l~~~~ 207 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALE---------AALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEFFGRLREIL 207 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 345555666666666655222 1234445555666777777777777664 335666667654443 44
Q ss_pred CC
Q 019120 173 GD 174 (346)
Q Consensus 173 GD 174 (346)
|+
T Consensus 208 ~~ 209 (343)
T PRK09039 208 GD 209 (343)
T ss_pred CC
Confidence 43
No 66
>PRK11546 zraP zinc resistance protein; Provisional
Probab=65.11 E-value=61 Score=29.28 Aligned_cols=78 Identities=15% Similarity=0.043 Sum_probs=45.1
Q ss_pred hccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 77 FYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQ 156 (346)
Q Consensus 77 fys~~p~~Ps~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe 156 (346)
+|.++..=--.=++.+.++|..++...|++|-.-..-|.+.-..+.. . ..+| -+|+.++..|++
T Consensus 40 ~~~~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~p--D-------~~kI-------~aL~kEI~~Lr~ 103 (143)
T PRK11546 40 NAAPLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPP--D-------SSKI-------NAVAKEMENLRQ 103 (143)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--C-------HHHH-------HHHHHHHHHHHH
Confidence 35555333345688899999999999999885444444322210111 1 2223 345556677777
Q ss_pred HHHHHHHHHHHHHH
Q 019120 157 YVETMKTAYLADQR 170 (346)
Q Consensus 157 ~Ve~lKe~YL~~~R 170 (346)
++.+++..|-...+
T Consensus 104 kL~e~r~~~~~~~~ 117 (143)
T PRK11546 104 SLDELRVKRDIAMA 117 (143)
T ss_pred HHHHHHHHHHHHHH
Confidence 76666666555444
No 67
>KOG3366 consensus Mitochondrial F1F0-ATP synthase, subunit d/ATP7 [Energy production and conversion]
Probab=65.09 E-value=13 Score=34.53 Aligned_cols=73 Identities=11% Similarity=0.193 Sum_probs=48.5
Q ss_pred hhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHH
Q 019120 75 FDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESI 154 (346)
Q Consensus 75 ~Dfys~~p~~Ps~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~L 154 (346)
++||+... =+..+|++||+++..|+--+....+.+.... +.....+..+-++-..+..++++|
T Consensus 55 wa~Yrk~v-----a~a~~VD~~ek~y~slk~v~~~~~ky~~~vd------------a~~k~~~~~~ke~~~~s~~~iq~l 117 (172)
T KOG3366|consen 55 WAYYRKVV-----ANAGLVDKYEKKYDSLKPVPVDEDKYLKEVD------------AEEKAAVKEIKEYESLSKKRIQEL 117 (172)
T ss_pred HHHHHHHh-----hhhHHHHHHHHHHHhccccCCCHHHHHHHhh------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45687763 4678899999999988843334444444221 233455666677777778888888
Q ss_pred HHHHHHHHHH
Q 019120 155 HQYVETMKTA 164 (346)
Q Consensus 155 He~Ve~lKe~ 164 (346)
...+++++..
T Consensus 118 ~k~le~v~~~ 127 (172)
T KOG3366|consen 118 EKELEKVKSA 127 (172)
T ss_pred HHHHHHHHhc
Confidence 8888877753
No 68
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=64.96 E-value=95 Score=31.00 Aligned_cols=25 Identities=8% Similarity=0.143 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 019120 92 TVARFEKYLGEFRQWIEELEQLILL 116 (346)
Q Consensus 92 lV~~FE~rL~~YRqqIEELE~~L~s 116 (346)
..+-++++|.++++.+++.|..|..
T Consensus 172 ~~~fl~~ql~~~~~~l~~ae~~l~~ 196 (444)
T TIGR03017 172 AALWFVQQIAALREDLARAQSKLSA 196 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788888888888887763
No 69
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=64.80 E-value=1.3e+02 Score=29.12 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
+++-+.+.++++++-++-|+.||.-|.
T Consensus 4 lq~~l~~l~~~~~~~~~L~~kLE~DL~ 30 (248)
T PF08172_consen 4 LQKELSELEAKLEEQKELNAKLENDLA 30 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456688889999999999999998776
No 70
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=64.79 E-value=19 Score=35.62 Aligned_cols=37 Identities=16% Similarity=0.155 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Q 019120 133 LPQVISNVHIFFVHVAA----------KAESIHQYVETMKTAYLADQ 169 (346)
Q Consensus 133 L~~~L~~~hq~FvaLAA----------rva~LHe~Ve~lKe~YL~~~ 169 (346)
|-.-|+..|+.|..... ....-.+.+++++..|-+|.
T Consensus 276 ll~el~~~~~~f~~~~~~~~~~~~~~~~~~~R~~~l~~l~~ay~~y~ 322 (356)
T cd09237 276 LINELKIELDKLFKLPGVKEKQSKEKSKQKLRKEFFEKLKKAYNSFK 322 (356)
T ss_pred HHHHHHHHHHHHHhCccHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555554433 33333334555555555443
No 71
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=64.61 E-value=79 Score=27.59 Aligned_cols=76 Identities=16% Similarity=0.154 Sum_probs=55.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 86 SAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAY 165 (346)
Q Consensus 86 s~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~Y 165 (346)
.+.|.-.|.+.|-.+..++.+|+.|++.=... -+.|...+ ..++-.-....++..|..+++++...|
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l------------~~Eiv~l~-~~~e~~~~~~~~~~~L~~el~~l~~ry 84 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDEL------------REEIVKLM-EENEELRALKKEVEELEQELEELQQRY 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677789999999999999999988763321 23455433 344555677778888888888888888
Q ss_pred HHHHHhcCC
Q 019120 166 LADQRRRGD 174 (346)
Q Consensus 166 L~~~Rr~GD 174 (346)
-.....+|.
T Consensus 85 ~t~LellGE 93 (120)
T PF12325_consen 85 QTLLELLGE 93 (120)
T ss_pred HHHHHHhcc
Confidence 887776663
No 72
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=64.27 E-value=52 Score=35.84 Aligned_cols=94 Identities=14% Similarity=0.239 Sum_probs=66.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCC---CC--C-------CCCCCccccccHHHHHHHHHHHHHHHH
Q 019120 86 SAFLQQTVARFEKYLGEFRQWIEELEQLIL-----LDP---DR--N-------SSSHGSSLLQSLPQVISNVHIFFVHVA 148 (346)
Q Consensus 86 s~YF~qlV~~FE~rL~~YRqqIEELE~~L~-----s~s---~~--~-------~S~~gs~tpQ~L~~~L~~~hq~FvaLA 148 (346)
..||...+...++.=.+.+.++++-..+-+ ... .. . ..++...+-++|..+|+++..-||.+=
T Consensus 348 ~~f~~~a~~~~eeEr~~L~~qL~eqk~~~q~L~h~va~~q~e~e~~a~~~~~~~dsV~~E~h~aLq~amekLq~~f~~~~ 427 (617)
T PF15070_consen 348 VEFFNSALAQAEEERARLRRQLEEQKVQCQHLAHQVASAQKEPEAEAPAPGTGGDSVPGETHQALQEAMEKLQSRFMDLM 427 (617)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccCcccCCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 358899999999887788887777543311 000 00 0 001111234678899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---hcCCCCCcc
Q 019120 149 AKAESIHQYVETMKTAYLADQR---RRGDGSDPF 179 (346)
Q Consensus 149 Arva~LHe~Ve~lKe~YL~~~R---r~GD~~DPF 179 (346)
-.++.|.++|+++-..++.++- -.|+|--.|
T Consensus 428 ~e~adl~e~~e~le~~~~ql~~et~ti~eyi~ly 461 (617)
T PF15070_consen 428 EEKADLKERVEKLEHRFIQLSGETDTIGEYITLY 461 (617)
T ss_pred HHHhhHHHHHHHHHHHHHHhccCccchhhhhccc
Confidence 9999999999999999998875 366665555
No 73
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=64.13 E-value=27 Score=30.79 Aligned_cols=63 Identities=8% Similarity=0.135 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 90 QQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTA 164 (346)
Q Consensus 90 ~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~ 164 (346)
.+.++.+-++|.+.-.-|...-+||.. =++.|-..|+.+.+.=-.+..+|..+++.|+.+++.
T Consensus 42 ~~A~~~v~kql~~vs~~l~~tKkhLsq------------RId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~d 104 (126)
T PF07889_consen 42 SDAVASVSKQLEQVSESLSSTKKHLSQ------------RIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDD 104 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344555555555555555555555440 133444444444444444444455555444444444
No 74
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=63.73 E-value=11 Score=36.58 Aligned_cols=28 Identities=36% Similarity=0.393 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
||.++|-=-|+-|++..++|+|||+.|+
T Consensus 45 ~laQ~vlvQE~AL~~a~~ri~eLe~ql~ 72 (247)
T PF09849_consen 45 YLAQTVLVQEQALKQAQARIQELEAQLQ 72 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999986
No 75
>PRK00736 hypothetical protein; Provisional
Probab=63.63 E-value=44 Score=26.25 Aligned_cols=31 Identities=6% Similarity=0.149 Sum_probs=14.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 130 LQSLPQVISNVHIFFVHVAAKAESIHQYVET 160 (346)
Q Consensus 130 pQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~ 160 (346)
.++|-.+|-.|.+-.-.|-.+|..|.+++++
T Consensus 21 ie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 21 IEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445554444444455555554444
No 76
>PRK14155 heat shock protein GrpE; Provisional
Probab=63.63 E-value=48 Score=31.41 Aligned_cols=82 Identities=15% Similarity=0.105 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Q 019120 87 AFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA-----AKAESIHQYVETM 161 (346)
Q Consensus 87 ~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLA-----Arva~LHe~Ve~l 161 (346)
.-|.++..+||+.-.+.++.++++-+.-.. ..+.+|-.++.++-...-+.. ..+..|++.|+..
T Consensus 34 d~~lR~~AefeN~RKR~~kE~e~~~~~a~~-----------~~~~~LLpV~DnLerAl~~~~~~~~~~~~~~i~~Gvemi 102 (208)
T PRK14155 34 DQALRYAAEAENTKRRAEREMNDARAYAIQ-----------KFARDLLGAADNLGRATAASPKDSADPAVKNFIIGVEMT 102 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhHHhhHHHHHhcccccccchHHHHHHHHHHHH
Confidence 345677777777777777777666554330 224555566666665554432 2367899999999
Q ss_pred HHHHHHHHHhcC----C--CCCcc
Q 019120 162 KTAYLADQRRRG----D--GSDPF 179 (346)
Q Consensus 162 Ke~YL~~~Rr~G----D--~~DPF 179 (346)
..+|++.-.++| + .-++|
T Consensus 103 ~k~~~~~L~k~GV~~I~~~~G~~F 126 (208)
T PRK14155 103 EKELLGAFERNGLKKIDPAKGDKF 126 (208)
T ss_pred HHHHHHHHHHCCCceecCCCCCCC
Confidence 999999776433 2 34677
No 77
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=63.10 E-value=60 Score=27.47 Aligned_cols=67 Identities=13% Similarity=0.200 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 87 AFLQQTVARFEKYLGEFRQWIEELEQLILLD-PDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQ 156 (346)
Q Consensus 87 ~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~-s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe 156 (346)
+-|.+.|+.....|..++..|.+|++..... +..+ .....-..|..++...+..+-.+-.+|..|..
T Consensus 2 ~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~---~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~ 69 (151)
T cd00179 2 EEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPD---ADPELKQELESLVQEIKKLAKEIKGKLKELEE 69 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999999999987622 2111 00011233444444444444455555554443
No 78
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=63.05 E-value=89 Score=26.05 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 133 LPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 133 L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
...-+..+.+.....-..|+.+...|+..++.+++.++
T Consensus 66 ~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~ 103 (141)
T TIGR02473 66 YQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARR 103 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555566666667777777777665
No 79
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=63.05 E-value=12 Score=33.29 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 019120 86 SAFLQQTVARFEKYLGEFRQWIEELEQLILLDP 118 (346)
Q Consensus 86 s~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s 118 (346)
-+|+.+.....|++|..+.+.|+.||..|.+..
T Consensus 9 v~fLN~F~~~cE~kL~~~e~~Lq~~E~~l~iLE 41 (148)
T PF10152_consen 9 VQFLNRFASVCEEKLSDMEQRLQRLEATLNILE 41 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888889999999999999999888554
No 80
>KOG4719 consensus Nuclear pore complex protein [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.71 E-value=35 Score=39.11 Aligned_cols=93 Identities=29% Similarity=0.434 Sum_probs=49.8
Q ss_pred cCCccccccccCCCCCCcccccCCCCCCcccCCCcccCCCCC-----CCCCCCCCCCCCCCCCCCcccCcccccccCCCC
Q 019120 226 VAPQTSAVISASSGGGLSLFSTPSSAPASSMSSSLFATPATS-----ASPSSLFGSGVSPQMSSSSLFAASTLSLFGSTV 300 (346)
Q Consensus 226 ~~p~~~~~p~~s~~s~~s~f~tpssaps~~~~~~lf~~~~t~-----~~~~~lfgs~~s~~~~tp~~g~~~~~~~fg~~~ 300 (346)
..||...+|+.++++.|+.-.-|. |+- ..+||.-+.+ .|+. .||. ++..-+.+.|+-.+.-.+||+-+
T Consensus 938 n~p~~~~tps~ss~ssf~~~tg~n--psa---s~~fggitntatnal~ps~-~fga-~~~s~~~~~~~n~ss~fafgsg~ 1010 (1053)
T KOG4719|consen 938 NTPTSGTTPSSSAGSSFVFGTGPN--PSA---SPAFGGITNTATNALFPSG-SFGA-VSSSSQPPVFGNQSSQFAFGSGT 1010 (1053)
T ss_pred CCccccccCCcccccccccccCCC--cCc---ccccccccccccccccccc-cccc-ccCCCCCCccCCcchhhcccCCC
Confidence 355555666555555544332232 333 3788865444 3333 4885 33333466777777777888755
Q ss_pred CCCCCcCC-CCccccccCCCCCCCCCCCCccc
Q 019120 301 PSFGSTTS-AGASLFSTPFASGAPSGSGASFG 331 (346)
Q Consensus 301 p~f~s~~~-~g~slf~~pf~~g~~~~~~~~~~ 331 (346)
|.-.+... .| ||.-|..+--|+|.|
T Consensus 1011 p~ns~s~pqs~------p~~~g~~~n~g~s~~ 1036 (1053)
T KOG4719|consen 1011 PPNSSSAPQSG------PFTFGANSNTGASSA 1036 (1053)
T ss_pred CCCcccCCCCC------ccccccccCCccccC
Confidence 54222222 12 555466666666665
No 81
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=62.46 E-value=31 Score=28.68 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
...=+.+|++-+...+++|++|.+.+.
T Consensus 33 ~~~E~~rl~~Al~~~~~eL~~l~~~~~ 59 (123)
T PF05524_consen 33 IEAEIERLEQALEKAREELEQLAERAE 59 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577888888888888888877766
No 82
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=62.18 E-value=1e+02 Score=28.92 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 87 AFLQQTVARFEKYLGEFRQWIEELEQ 112 (346)
Q Consensus 87 ~YF~qlV~~FE~rL~~YRqqIEELE~ 112 (346)
.=..+.+++-...+..-+..++-||.
T Consensus 100 ~~w~~al~na~a~lehq~~R~~NLeL 125 (221)
T PF05700_consen 100 EAWKEALDNAYAQLEHQRLRLENLEL 125 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555444444444443
No 83
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=61.39 E-value=58 Score=32.64 Aligned_cols=40 Identities=15% Similarity=0.302 Sum_probs=29.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 131 QSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 131 Q~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
..|..-..-+|+-||....++..+|+.+.+++..+..+.+
T Consensus 203 De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k 242 (294)
T COG1340 203 DELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEK 242 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3455666677778888888888888887777777777665
No 84
>PRK11637 AmiB activator; Provisional
Probab=61.34 E-value=51 Score=33.36 Aligned_cols=22 Identities=18% Similarity=0.090 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 019120 94 ARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 94 ~~FE~rL~~YRqqIEELE~~L~ 115 (346)
++.+++|+..+++|+++++.+.
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~ 64 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVR 64 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555544
No 85
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=60.86 E-value=68 Score=28.80 Aligned_cols=36 Identities=8% Similarity=0.155 Sum_probs=20.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 132 SLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLA 167 (346)
Q Consensus 132 ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~ 167 (346)
.|+..+..+++-+..|..+|..+-..+.++-+....
T Consensus 56 ~lp~~~~~~~~~L~~l~~~l~~a~~~~~~l~~~e~~ 91 (145)
T PF14942_consen 56 ILPRCIELMQQNLEQLLERLQAANSMCSRLQQKEQE 91 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666655555555444333
No 86
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=60.64 E-value=59 Score=29.86 Aligned_cols=75 Identities=13% Similarity=0.108 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 91 QTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 91 qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
++|--.|++|..+...+|+++..-...+ ..++. ..-++...|+.+++..+..-.+++.|.++|+++-+.|.+.-.
T Consensus 87 ~~ILa~e~~i~~~~~~Leki~~L~pvL~---se~i~--~vp~~~~kL~~L~~~~~~Q~e~~~~ls~~~~~Ll~~YN~ii~ 161 (174)
T PF07426_consen 87 QIILAEEDEIKSTAELLEKIKSLEPVLD---SESIR--NVPELCDKLQKLSQIHLEQQEESEELSEEVQELLQQYNKIIL 161 (174)
T ss_pred HHHHHccHHHHHHHHHHHHHHHhhhhcC---cHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677666665555544433222 11111 123556889999999999999999999999999999988653
No 87
>PRK12717 flgL flagellar hook-associated protein FlgL; Provisional
Probab=60.35 E-value=37 Score=35.89 Aligned_cols=69 Identities=13% Similarity=0.206 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q 019120 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHV------AAKAESIHQYVETMKTAYL 166 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaL------AArva~LHe~Ve~lKe~YL 166 (346)
+..-..++.+|.+.|...+..|.... ..+..+..+|+++++..|+. ....+.|.++|+.++++.+
T Consensus 52 l~~~~~~l~qy~~Ni~~a~~~L~~~e---------saL~~i~~~lqr~rel~vqa~ngt~s~~dr~aia~El~~l~~~l~ 122 (523)
T PRK12717 52 LQQQQAMLDQYSGNITTIKNSLTQEE---------STLTSINDTLQRARELAVSAGNGGLTDADRKAIASELKQIEAQLL 122 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34445566777778888888777443 34788999999999988865 4667788999999999887
Q ss_pred HHHH
Q 019120 167 ADQR 170 (346)
Q Consensus 167 ~~~R 170 (346)
.+--
T Consensus 123 ~~aN 126 (523)
T PRK12717 123 GLMN 126 (523)
T ss_pred HHHh
Confidence 7543
No 88
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=60.33 E-value=89 Score=31.89 Aligned_cols=71 Identities=17% Similarity=0.190 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019120 95 RFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGD 174 (346)
Q Consensus 95 ~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~Rr~GD 174 (346)
.+++.+..+++.++++|..+..... .. ..+ ......+..+......++..|.+.++++++.|-+..++.|.
T Consensus 279 ~l~~~~~~l~~~~~~~e~~~~~l~~--~~------~~~-d~f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge 349 (432)
T smart00498 279 QLEKDVKQLERQIKNLETDLGGLSD--PE------NLD-DKFIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGE 349 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC--CC------Ccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4566777788888888876553332 00 011 23344455666677789999999999999999999998774
No 89
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=60.08 E-value=23 Score=29.35 Aligned_cols=38 Identities=5% Similarity=0.258 Sum_probs=20.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 131 QSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD 168 (346)
Q Consensus 131 Q~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~ 168 (346)
..|+.+..++..++...-=-..+.|++|+++++.|=..
T Consensus 61 ~~L~~a~~~l~~I~~n~~lT~~q~~~~I~~l~~~~~~e 98 (113)
T PF02520_consen 61 SNLSSAFAKLSAILDNKSLTRQQQQEAIDALRKQYPEE 98 (113)
T ss_pred HHHHHHHHHHHHHHcCcccCHHHHHHHHHHHHHHCCHH
Confidence 34555555555555433224556666666666665443
No 90
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=59.86 E-value=65 Score=31.08 Aligned_cols=61 Identities=11% Similarity=0.165 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019120 94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRG 173 (346)
Q Consensus 94 ~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~Rr~G 173 (346)
+.+|++.+.+..+.+.+|.+|. ..+..-++.|++-=.+++.|++++++.-..-.+.||.+.
T Consensus 31 ~~i~~~~ekLs~~ldvVe~~L~-------------------~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~ 91 (291)
T PF10475_consen 31 EDIEELQEKLSHYLDVVEKKLS-------------------REISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLK 91 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666666666655 223334444555556777777777777766666666433
No 91
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=58.90 E-value=88 Score=34.01 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhhHHHHHHHHH
Q 019120 143 FFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFLEADRRETARQEA 192 (346)
Q Consensus 143 ~FvaLAArva~LHe~Ve~lKe~YL~~~Rr~GD~~DPFaEadr~Eaa~q~~ 192 (346)
|.+.||.+=-.|...|+......-....++.+..||=+-.=|+-.+++-+
T Consensus 425 ~Ll~lA~q~L~l~~dv~~A~~~L~~AD~~La~~~~P~l~~lR~Ala~Di~ 474 (656)
T PRK06975 425 QMLSSASQQLQLTGNVQLALIALQNADARLATSDSPQAVAVRKAIAQDIE 474 (656)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 33444444333333344433333333344555578844444544444433
No 92
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=58.88 E-value=1.1e+02 Score=26.35 Aligned_cols=74 Identities=12% Similarity=0.060 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 94 ~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
+.-+.+|....+..++.+..+..... ++ +..........-|..+.+.....-..|+.+...|+..+..+++.++
T Consensus 33 ~~~~~~L~~L~~~~~~~~~~~~~~~~-~g--~~~~~l~~~~~fl~~L~~~i~~q~~~v~~~~~~ve~~r~~~~ea~~ 106 (146)
T PRK07720 33 EQVAEKLYELLKQKEDLEQAKEEKLQ-SG--LSIQEIRHYQQFVTNLERTIDHYQLLVMQAREQMNRKQQDLTEKNI 106 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-CC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555442221 11 1111223334455555555555666666667777777888887765
No 93
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=58.76 E-value=1.2e+02 Score=26.04 Aligned_cols=37 Identities=8% Similarity=0.141 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 134 PQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 134 ~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
..-|..+++...+....|+.+-..|+..++.+++.++
T Consensus 70 ~~fi~~L~~~I~~q~~~v~~~~~~ve~~r~~~~~a~~ 106 (147)
T PRK05689 70 QQFLQQLEKAITQQRQQLTQWTQKVDNARKYWQEKKQ 106 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447777777777777777888888888888888775
No 94
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=58.64 E-value=92 Score=28.49 Aligned_cols=73 Identities=14% Similarity=0.225 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-hcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 93 VARFEKYLGEFRQWIEELEQLI-LLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQ 169 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L-~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~ 169 (346)
+.+++++|..+++.+..+...+ ......... ....+...-++.+.+-+..+-.+++.++++++.+.+.|.+..
T Consensus 153 l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 226 (292)
T PF01544_consen 153 LFDLRRELSRLRRSLSPLREVLQRLLRRDDSP----FISDEDKEYLRDLLDRIERLLERAESLRERLESLQDLYQSKL 226 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCST----TSHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhh----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788888888887777776 322210111 223455666888888888899999999999999999998864
No 95
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=58.63 E-value=54 Score=38.01 Aligned_cols=36 Identities=19% Similarity=0.083 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHhhhccccccccC
Q 019120 5 KAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLHPN 40 (346)
Q Consensus 5 k~~~~~l~~~V~~~lrntE~Avrs~~~lr~rf~~~~ 40 (346)
++.++++++-|..+=+-.|.|+..+.++|.++..-.
T Consensus 322 ea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~ 357 (1074)
T KOG0250|consen 322 EAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLK 357 (1074)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888888888777665433
No 96
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.42 E-value=19 Score=34.76 Aligned_cols=31 Identities=32% Similarity=0.297 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLILLDP 118 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s 118 (346)
|+.+.|-=.|+-|+....+|+|||+.++...
T Consensus 45 ~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq 75 (233)
T COG3416 45 YLAQRVLIQEQALKKASTQIKELEKRIAILQ 75 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7889999999999999999999999999443
No 97
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=58.25 E-value=68 Score=23.99 Aligned_cols=63 Identities=11% Similarity=0.100 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 92 TVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVE 159 (346)
Q Consensus 92 lV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve 159 (346)
-...|++.|...+..|+.|...-....+ ..+ .....|...+..++..+-.|-..+..-...|+
T Consensus 42 ~~~~~~~ei~~~~~~l~~l~~~~~~L~~--~~~---~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~Le 104 (105)
T PF00435_consen 42 KHKELQEEIESRQERLESLNEQAQQLID--SGP---EDSDEIQEKLEELNQRWEALCELVEERRQKLE 104 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTH---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHH--cCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3566666666666666666654442211 111 12456777777777777777555555544443
No 98
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=57.90 E-value=58 Score=25.40 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 91 QTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 91 qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
+-|.++|.+|......||+|-..|.
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~ 28 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVT 28 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666555544
No 99
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=57.69 E-value=32 Score=25.36 Aligned_cols=68 Identities=12% Similarity=0.111 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVET 160 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~ 160 (346)
|....+++++.+..++..|+.|+..-.-. .+..=......+...+.++.+.+..+...|..+++..+.
T Consensus 16 ~~~~~~~l~~~~~~l~~~~~~l~~~W~G~----a~~af~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~~~ 83 (86)
T PF06013_consen 16 LQAQADELQSQLQQLESSIDSLQASWQGE----AADAFQDKFEEWNQAFRQLNEALEELSQALRQAAQNYEQ 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGBTSS----TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55667777788888888877775544411 110001234566777777777777777777777776654
No 100
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=57.64 E-value=16 Score=33.19 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 019120 93 VARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~ 115 (346)
|.-+|.||+.|++-|+.||+.|.
T Consensus 147 i~a~e~RL~RCr~Ai~~iE~~I~ 169 (173)
T PF07445_consen 147 ILALEQRLQRCRQAIEKIEEQIQ 169 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888888775
No 101
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=57.62 E-value=58 Score=30.44 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 90 QQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 90 ~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
+.+|+.||+++.+-+..|+|...-|+
T Consensus 66 q~iveqLe~ev~EAe~vV~ee~~sL~ 91 (188)
T PF05335_consen 66 QQIVEQLEQEVREAEAVVQEEKASLQ 91 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999988888777
No 102
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=57.46 E-value=37 Score=27.70 Aligned_cols=62 Identities=15% Similarity=0.167 Sum_probs=39.7
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHH
Q 019120 84 KPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAK 150 (346)
Q Consensus 84 ~Ps~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAAr 150 (346)
.-++.+++.+.++|++++..-+-|||=..-+.--.+-+.. -=-+|-..|+.+|+...+||.|
T Consensus 11 ~~skWL~~~l~dmd~kvk~mlklieedgdSfakrAEmyy~-----kRp~Li~~vee~yr~YrsLAer 72 (74)
T PF07765_consen 11 KQSKWLQENLSDMDEKVKAMLKLIEEDGDSFAKRAEMYYK-----KRPELISLVEEFYRSYRSLAER 72 (74)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhccCcchHHHhhHHHhc-----ccHHHHHHHHHHHHHHHHHHHh
Confidence 3478999999999999998888887611110000000000 0126778888888888888875
No 103
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=57.41 E-value=16 Score=29.74 Aligned_cols=55 Identities=15% Similarity=0.088 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 92 TVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIH 155 (346)
Q Consensus 92 lV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LH 155 (346)
+-.-|++....+++.+++|+.+|...++ .|.+-...+-.+|+.++.|-.-+..-+
T Consensus 32 lk~~f~~~~~~~~~~~~~L~~~i~~~Gg---------~p~~~gs~~g~~~r~~~~ik~~~~~~d 86 (111)
T PF09537_consen 32 LKSLFQEFAQERQQHAEELQAEIQELGG---------EPEESGSFKGALHRAWMDIKSALGGDD 86 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT-----------H----HHCHHHH-TTTHHHHS-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC---------CcCcccCHHHHHHHHHHHHHHHhcCCC
Confidence 3567889999999999999999996664 155567888899999998866444443
No 104
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=57.40 E-value=1e+02 Score=30.37 Aligned_cols=71 Identities=7% Similarity=0.045 Sum_probs=44.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 85 PSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTA 164 (346)
Q Consensus 85 Ps~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~ 164 (346)
+.+-+.+--.++++......++|.+|++... .++.+....+.++.+.|-.+..++..|.+.+.++++.
T Consensus 8 ~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y------------~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~ 75 (338)
T PF04124_consen 8 SLESLFSEPQSLSEEIASLDAQLQSLAFRNY------------KTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEA 75 (338)
T ss_pred CHHHHHhhHHHHHHHHHHHHHHHHHHHHHhH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333445555555555555555554422 3466777888888888888888888888888777765
Q ss_pred HHH
Q 019120 165 YLA 167 (346)
Q Consensus 165 YL~ 167 (346)
--.
T Consensus 76 ~~~ 78 (338)
T PF04124_consen 76 CQR 78 (338)
T ss_pred HHH
Confidence 433
No 105
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=57.13 E-value=53 Score=32.41 Aligned_cols=70 Identities=16% Similarity=0.233 Sum_probs=49.1
Q ss_pred HHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCCcc-ch
Q 019120 106 WIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRR---RGDGSDPF-LE 181 (346)
Q Consensus 106 qIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~Rr---~GD~~DPF-aE 181 (346)
.|+++|++|+ ...+.+..-++...+....|++..+.|.++|++-|..+=..++| +-..+=.| +|
T Consensus 159 e~~~iE~~l~------------~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdE 226 (267)
T PF10234_consen 159 ELNEIEKALK------------EAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDE 226 (267)
T ss_pred CHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 5677788877 22456777788888888888889899999988888877665553 44556566 44
Q ss_pred hhHHHH
Q 019120 182 ADRRET 187 (346)
Q Consensus 182 adr~Ea 187 (346)
-++=|+
T Consensus 227 yEklE~ 232 (267)
T PF10234_consen 227 YEKLEE 232 (267)
T ss_pred HHHHHH
Confidence 444443
No 106
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=56.95 E-value=1.4e+02 Score=26.38 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=27.5
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 82 PKKPSAFLQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 82 p~~Ps~YF~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
.++=+..|.++..+|.+.|..|-+.|-.=+..|.
T Consensus 22 eklds~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~ 55 (131)
T PF10158_consen 22 EKLDSRPVLRLCSRYQEHLNQCAEAVAFDQNALA 55 (131)
T ss_pred HccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999998877665554
No 107
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.94 E-value=33 Score=27.95 Aligned_cols=33 Identities=6% Similarity=0.273 Sum_probs=16.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 130 LQSLPQVISNVHIFFVHVAAKAESIHQYVETMK 162 (346)
Q Consensus 130 pQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lK 162 (346)
++.|..+|-.+....-.+.++|..|-++++++.
T Consensus 24 ieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 24 IEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344445555555554555555555555554443
No 108
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=56.65 E-value=49 Score=27.36 Aligned_cols=9 Identities=11% Similarity=0.586 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 019120 153 SIHQYVETM 161 (346)
Q Consensus 153 ~LHe~Ve~l 161 (346)
.|+++..++
T Consensus 84 ~LD~ysk~L 92 (99)
T PF10046_consen 84 ELDEYSKEL 92 (99)
T ss_pred HHHHHHHHH
Confidence 333333333
No 109
>PRK00295 hypothetical protein; Provisional
Probab=56.53 E-value=92 Score=24.42 Aligned_cols=31 Identities=13% Similarity=0.200 Sum_probs=15.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 130 LQSLPQVISNVHIFFVHVAAKAESIHQYVET 160 (346)
Q Consensus 130 pQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~ 160 (346)
..+|-.+|-.|.+-.-.|-.+|..|+++++.
T Consensus 21 ie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 21 IQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555444555555555555544
No 110
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=56.39 E-value=36 Score=32.84 Aligned_cols=62 Identities=11% Similarity=0.141 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 91 QTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETM 161 (346)
Q Consensus 91 qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~l 161 (346)
+++.++..++..++.-|+++..+....++ .-.+|..+|++.-...-.|+.+=+.|++-+..+
T Consensus 42 ~~l~~ln~~~~~l~~~l~~l~~v~~~~a~---------aapdL~~~l~~~~~~s~tL~~~~~~L~~lL~~~ 103 (267)
T PF11887_consen 42 TLLATLNPRLPQLREDLRNLADVADTYAD---------AAPDLLDALDNLTTTSRTLVDQRQQLDALLLSA 103 (267)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33445555555555555555555554442 134666666666666666666665555554433
No 111
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=56.28 E-value=1.8e+02 Score=27.41 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 90 QQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 90 ~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
++.++++.++-+...+.|+.|++.+.
T Consensus 41 Q~~id~~~~e~~~L~~e~~~l~~e~e 66 (251)
T PF11932_consen 41 QKRIDQWDDEKQELLAEYRQLEREIE 66 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666555
No 112
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=55.29 E-value=43 Score=31.65 Aligned_cols=47 Identities=9% Similarity=0.202 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 019120 133 LPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPF 179 (346)
Q Consensus 133 L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~Rr~GD~~DPF 179 (346)
|...++++.+..-.|+.+-..|++-++++...--.....+.+++|.|
T Consensus 211 l~~~v~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~~l 257 (291)
T TIGR00996 211 LDRLLDNLATLTAQLADRDDALDDALAALSGASAQVRDLLAENRPNL 257 (291)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 33444444443333333333343333333322222222334444444
No 113
>PRK08027 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=55.05 E-value=62 Score=31.78 Aligned_cols=68 Identities=13% Similarity=0.115 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q 019120 94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHV------AAKAESIHQYVETMKTAYLA 167 (346)
Q Consensus 94 ~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaL------AArva~LHe~Ve~lKe~YL~ 167 (346)
++...++.+|.+.|..++..|.... ..+..+..+|+++.+..|+. +...+.|.++|+.++++.+.
T Consensus 53 ~~~~~~~~qy~~n~~~a~~~l~~~e---------~~L~~i~~~l~r~rel~v~a~ngt~s~~dr~aia~Ei~~l~~~l~~ 123 (317)
T PRK08027 53 SQAQAQNSQYTLARTFATQKVSLEE---------SVLSQVTTAIQNAQEKIVYAGNGTLSDDDRASLATDLQGLRDQLLN 123 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5666678888888888888877442 34788999999999988865 34667888889988888777
Q ss_pred HHH
Q 019120 168 DQR 170 (346)
Q Consensus 168 ~~R 170 (346)
.--
T Consensus 124 ~aN 126 (317)
T PRK08027 124 LAN 126 (317)
T ss_pred HHc
Confidence 543
No 114
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=54.80 E-value=1.1e+02 Score=24.36 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 140 VHIFFVHVAAKAESIHQYVETMKTAYLA 167 (346)
Q Consensus 140 ~hq~FvaLAArva~LHe~Ve~lKe~YL~ 167 (346)
.++-.+.+=.+|..||++++++|+.=.+
T Consensus 62 y~~KL~~ikkrm~~l~~~l~~lk~R~~~ 89 (92)
T PF14712_consen 62 YVKKLVNIKKRMSNLHERLQKLKKRADK 89 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445556666666666666665333
No 115
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=54.77 E-value=1.3e+02 Score=30.39 Aligned_cols=31 Identities=3% Similarity=0.163 Sum_probs=18.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 132 SLPQVISNVHIFFVHVAAKAESIHQYVETMK 162 (346)
Q Consensus 132 ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lK 162 (346)
.....++.+.+-+-.+..+++.+.+++..+.
T Consensus 90 ~~~~~~~~l~~~l~~~~~~l~~l~~~~~~l~ 120 (372)
T PF04375_consen 90 QQQEQLQQLQQELAQLQQQLAELQQQLAALS 120 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555556666666666666666543
No 116
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=54.60 E-value=95 Score=28.38 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 019120 93 VARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~ 115 (346)
..++|.++..+...|+++|....
T Consensus 53 ~~~le~~~~~~~~~~~~~~~~A~ 75 (221)
T PF04012_consen 53 QKRLERKLDEAEEEAEKWEKQAE 75 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888888766
No 117
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=54.57 E-value=1.1e+02 Score=25.69 Aligned_cols=38 Identities=5% Similarity=0.192 Sum_probs=23.0
Q ss_pred ccHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Q 019120 131 QSLPQVISNVHIFFVHVAA---------KAESIHQYVETMKTAYLAD 168 (346)
Q Consensus 131 Q~L~~~L~~~hq~FvaLAA---------rva~LHe~Ve~lKe~YL~~ 168 (346)
.+|..-|.++|+++..--. .+..+..-+.++++.+-+.
T Consensus 72 ~eia~~L~~lY~y~~~~L~~A~~~~d~~~l~~v~~~l~~l~~aW~e~ 118 (122)
T PF02561_consen 72 GEIADNLFRLYDYMIRQLVQANLKKDPERLDEVIRILEELRDAWEEI 118 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999874322 3334444444555544443
No 118
>PF13097 CENP-U: CENP-A nucleosome associated complex (NAC) subunit
Probab=54.44 E-value=1.3e+02 Score=28.17 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 90 QQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLA 167 (346)
Q Consensus 90 ~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~ 167 (346)
-=++..||+-+.+|||.||- -+ -..+| ..++.++=.+|-.+-..|+++|..-++
T Consensus 107 DVvL~~FEk~~~eYkq~ieS---~~------------------cr~AI---~~F~~~~keqL~~~i~evq~lK~lkrk 160 (175)
T PF13097_consen 107 DVVLSAFEKTALEYKQSIES---KI------------------CRKAI---NKFYSNFKEQLIEMIKEVQELKNLKRK 160 (175)
T ss_pred HHHHHHHHHHHHHHHHhhcc---HH------------------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33577888888888887652 11 13333 444455555666666777777765443
No 119
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=54.20 E-value=14 Score=24.08 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=18.6
Q ss_pred ChhhHHHHHHHHHHHHHHhhc
Q 019120 1 MERQKAQLQERMAVVKDMLRN 21 (346)
Q Consensus 1 ~er~k~~~~~l~~~V~~~lrn 21 (346)
|+|.|..|.+|.....+|.||
T Consensus 3 ~~rlr~rI~dLer~L~~C~~n 23 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECRRN 23 (23)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 789999999999999998876
No 120
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=54.13 E-value=1.6e+02 Score=28.44 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=20.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 019120 86 SAFLQQTVARFEKYLGEFRQWIEELEQLILLD 117 (346)
Q Consensus 86 s~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~ 117 (346)
..+..++...++++|..+++.++.+.+.+...
T Consensus 153 ~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~ 184 (319)
T PF02601_consen 153 DELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQ 184 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44555566666666666666676666666633
No 121
>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.92 E-value=42 Score=35.49 Aligned_cols=39 Identities=33% Similarity=0.336 Sum_probs=23.9
Q ss_pred cccCC---CCCCCCCCCCCCCCCCCCCCCcccCcccccccCCCCC
Q 019120 260 LFATP---ATSASPSSLFGSGVSPQMSSSSLFAASTLSLFGSTVP 301 (346)
Q Consensus 260 lf~~~---~t~~~~~~lfgs~~s~~~~tp~~g~~~~~~~fg~~~p 301 (346)
+||++ .+|-|.+++|+++-+-+ | +||.+++++.++...|
T Consensus 257 tFgs~ks~~tp~p~sssfss~~~kp--t-sfgassa~s~~s~p~~ 298 (487)
T KOG2724|consen 257 TFGSPKSADTPKPASSSFSSSPSKP--T-SFGASSADSTTSAPKP 298 (487)
T ss_pred eecCCccccCCCcccccccccCcCC--c-ccccccCccccCCCCc
Confidence 56653 45677778887643322 2 4787888777764433
No 122
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.92 E-value=92 Score=30.11 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Q 019120 94 ARFEKYLGEFRQWIEELEQLILLD 117 (346)
Q Consensus 94 ~~FE~rL~~YRqqIEELE~~L~s~ 117 (346)
.+||++|.++-....-||.++-+.
T Consensus 71 K~~E~qL~qidG~l~tie~Qr~al 94 (221)
T KOG1656|consen 71 KRYEKQLAQIDGTLSTIEFQREAL 94 (221)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 457777777666666666665533
No 123
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=53.19 E-value=73 Score=24.68 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 019120 136 VISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPF 179 (346)
Q Consensus 136 ~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~Rr~GD~~DPF 179 (346)
.|..+..-.-.|...|+.|.+.|+++-+.|=---+ .-|||
T Consensus 15 ~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs~----~iNPF 54 (55)
T PF05377_consen 15 SINTVKKENEEISESVEKIEENVKDLLSLYEVVSN----QINPF 54 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cCCCC
Confidence 34444444455566666677777666666543322 33666
No 124
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=53.03 E-value=99 Score=26.59 Aligned_cols=82 Identities=18% Similarity=0.201 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA--AKAESIHQYVETMKTAY 165 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLA--Arva~LHe~Ve~lKe~Y 165 (346)
-+.++..+||+.-++.++.++++...... ..+.+|-.++.++-...-+.- ..+..+.+.++.+.+.+
T Consensus 7 ~~~r~~ae~~N~rkr~~~e~~~~~~~~~~-----------~~~~~ll~v~D~le~a~~~~~~~~~~~~~~~g~~~i~~~l 75 (137)
T cd00446 7 KLLRALAEFENYRKRTEREREEARKYAIE-----------KFAKDLLPVLDNLERALEAAKKEEELKNLVEGVEMTLKQL 75 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 35677888888888888888877665320 123444555555544433322 14567888888888888
Q ss_pred HHHHHh-----cCCCCCccc
Q 019120 166 LADQRR-----RGDGSDPFL 180 (346)
Q Consensus 166 L~~~Rr-----~GD~~DPFa 180 (346)
++.-.+ .+..-++|+
T Consensus 76 ~~~L~~~Gv~~i~~~g~~FD 95 (137)
T cd00446 76 LDVLEKHGVEKIEPEGEPFD 95 (137)
T ss_pred HHHHHHCCCEEECCCCCCCC
Confidence 886653 333445773
No 125
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=53.02 E-value=1.2e+02 Score=25.22 Aligned_cols=42 Identities=7% Similarity=0.074 Sum_probs=28.6
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 129 LLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 129 tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
-.+++..++.++..-.-.+-.++..|..+++.+++.+-+.++
T Consensus 61 v~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 61 VKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred heecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777776666666777777777777666666554
No 126
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=52.96 E-value=58 Score=24.61 Aligned_cols=30 Identities=30% Similarity=0.302 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 86 SAFLQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 86 s~YF~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
.+||.++-..+++-+...+.-|++||.++.
T Consensus 19 ~~~~~~~~~~~~~n~~~K~~Li~~~~~l~~ 48 (77)
T PF03993_consen 19 KEFFEEQDAEREENLEKKEALIEEAEALAE 48 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 457777777777777777777887777644
No 127
>PRK14150 heat shock protein GrpE; Provisional
Probab=52.59 E-value=98 Score=28.85 Aligned_cols=81 Identities=19% Similarity=0.185 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHV---AAKAESIHQYVETMKTA 164 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaL---AArva~LHe~Ve~lKe~ 164 (346)
.|.++..+||+.=.+..+.++++...-.. ..+.+|-.++.++...+-+. ...+..|++.|+....+
T Consensus 60 ~~lR~~AefeN~rkR~~kE~~~~~~~a~~-----------~~~~~lL~v~DnlerAl~~~~~~~~~~~~~~~Gv~mi~~~ 128 (193)
T PRK14150 60 SVLRARAEVENIRRRAEQDVEKAHKFALE-----------KFANELLPVIDNLERALQAADKENEALKALIEGVELTLKS 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhHHhHHHHHHhcccccchhHHHHHHHHHHHHHH
Confidence 55677888888888888877777665331 23456667777777766432 23467899999999999
Q ss_pred HHHHHHhcC-----CCCCcc
Q 019120 165 YLADQRRRG-----DGSDPF 179 (346)
Q Consensus 165 YL~~~Rr~G-----D~~DPF 179 (346)
+++.-.++| -..+||
T Consensus 129 l~~~L~~~Gv~~i~~~G~~F 148 (193)
T PRK14150 129 LLDTVAKFGVEVVGPVGEPF 148 (193)
T ss_pred HHHHHHHCCCeeeCCCCCCC
Confidence 999776433 235677
No 128
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=52.56 E-value=2.2e+02 Score=27.38 Aligned_cols=15 Identities=53% Similarity=0.665 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 019120 96 FEKYLGEFRQWIEEL 110 (346)
Q Consensus 96 FE~rL~~YRqqIEEL 110 (346)
-|+.|.+|++.+++|
T Consensus 30 ee~~L~e~~kE~~~L 44 (230)
T PF10146_consen 30 EEKCLEEYRKEMEEL 44 (230)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 129
>COG3923 PriC Primosomal replication protein N'' [DNA replication, recombination, and repair]
Probab=52.31 E-value=22 Score=33.11 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 90 QQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 90 ~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
++-|.-+|.||..||.-||-||+.|.
T Consensus 146 qqel~~~e~RlarCr~AlekiE~~l~ 171 (175)
T COG3923 146 QQELEAYEQRLARCRHALEKIENRLA 171 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456678888888888888888765
No 130
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=52.25 E-value=2e+02 Score=30.85 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHH
Q 019120 87 AFLQQTVARFEK-YLGEFRQWIEE 109 (346)
Q Consensus 87 ~YF~qlV~~FE~-rL~~YRqqIEE 109 (346)
.||.+.+.+||+ +|+.-|+..|+
T Consensus 335 ~y~e~~~~e~~qsqlen~k~~~e~ 358 (493)
T KOG0804|consen 335 KYYEQIMSEYEQSQLENQKQYYEL 358 (493)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 466666666666 44444444333
No 131
>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.97 E-value=55 Score=35.60 Aligned_cols=32 Identities=13% Similarity=0.172 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 019120 87 AFLQQTVARFEKYLGEFRQWIEELEQLILLDP 118 (346)
Q Consensus 87 ~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s 118 (346)
.+|=++++..|+.|..||...+|+-+.+-..+
T Consensus 312 ~pFP~VAE~Ve~eL~~Yk~~~~ei~r~~G~sg 343 (621)
T KOG1301|consen 312 SPFPEVAENVEEELESYKNEEAEIKRKMGLSG 343 (621)
T ss_pred CCCchHHHHHHHHHHHHHhhHHHHHhhcCCCc
Confidence 34557899999999999999999999554333
No 132
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=51.87 E-value=1.5e+02 Score=29.55 Aligned_cols=27 Identities=7% Similarity=0.226 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHhhh
Q 019120 5 KAQLQERMAVVKDMLRNTEIAVRSFMM 31 (346)
Q Consensus 5 k~~~~~l~~~V~~~lrntE~Avrs~~~ 31 (346)
..-|++-...+++-|...|.+++.|+.
T Consensus 173 ~~fl~~ql~~~~~~l~~ae~~l~~fr~ 199 (444)
T TIGR03017 173 ALWFVQQIAALREDLARAQSKLSAYQQ 199 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667778888889999988874
No 133
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=51.85 E-value=2.4e+02 Score=29.20 Aligned_cols=35 Identities=17% Similarity=0.098 Sum_probs=28.6
Q ss_pred chhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 74 VFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQ 112 (346)
Q Consensus 74 v~Dfys~~p~~Ps~YF~qlV~~FE~rL~~YRqqIEELE~ 112 (346)
+.|+-.-+ ++=|.+|+++|+.+++.|.++|+..|.
T Consensus 135 lre~NieL----~eKlkeL~eQy~~re~hidk~~e~kel 169 (391)
T KOG1850|consen 135 LREDNIEL----SEKLKELGEQYEEREKHIDKQIQKKEL 169 (391)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554444 788999999999999999999998873
No 134
>PF14576 SEO_N: Sieve element occlusion N-terminus
Probab=51.16 E-value=21 Score=35.55 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 90 QQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 90 ~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
...+++|.++|..|+++|||+|-...
T Consensus 251 ~~I~~~Lk~qL~~C~~~I~~~E~y~~ 276 (286)
T PF14576_consen 251 SNILSHLKKQLDLCRQQIEEIEDYQM 276 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34478899999999999999987654
No 135
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=50.78 E-value=98 Score=26.53 Aligned_cols=25 Identities=20% Similarity=0.097 Sum_probs=16.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 86 SAFLQQTVARFEKYLGEFRQWIEEL 110 (346)
Q Consensus 86 s~YF~qlV~~FE~rL~~YRqqIEEL 110 (346)
..||.+||.+=|..-.+-+..|+++
T Consensus 25 ~k~~~~LVkkGe~~~ee~k~~~~e~ 49 (118)
T TIGR01837 25 SKFFNRLVKEGELAEKRGQKRFDES 49 (118)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHH
Confidence 4677888877776666666665554
No 136
>KOG4484 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.72 E-value=1.1e+02 Score=28.98 Aligned_cols=58 Identities=9% Similarity=0.072 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 99 YLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 99 rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
....++.+|..+|++|....- -+.......+++.+.=.+ ...|+.+...+..|..|++
T Consensus 25 gts~iK~qiRd~eRlLkk~~L---------P~~Vr~e~er~L~~Lk~q-----l~~~~l~~k~rkif~ryrk 82 (199)
T KOG4484|consen 25 GTSSIKNQIRDLERLLKKKDL---------PPEVREELERKLQDLKKQ-----LDNHELLAKERKIFKRYRK 82 (199)
T ss_pred chHHHHHHHHHHHHHHhhccC---------CHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 345678999999999995331 122222333333332222 2567777777777777776
No 137
>PRK08870 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=50.67 E-value=75 Score=31.94 Aligned_cols=69 Identities=12% Similarity=0.199 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Q 019120 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAA------KAESIHQYVETMKTAYL 166 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAA------rva~LHe~Ve~lKe~YL 166 (346)
++.-..++++|.+.|++....|.... ..+..|..+|+++.+..|+.+. ....|.++++.++++.+
T Consensus 52 l~~~~~~~~qy~~n~~~~~~~l~~~~---------~~L~~i~~~l~~~r~~~v~a~n~t~s~~~r~aia~e~~~l~~~l~ 122 (404)
T PRK08870 52 LSQQSALLDQYTKNINLARNRLQQEE---------STLGSVEDLLQRARELVVQAGNGSLSDSDRQAIATELQGLRDQLL 122 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34445677788888888888887443 3478899999999998887643 66788888999988876
Q ss_pred HHHH
Q 019120 167 ADQR 170 (346)
Q Consensus 167 ~~~R 170 (346)
..--
T Consensus 123 ~~~N 126 (404)
T PRK08870 123 NLAN 126 (404)
T ss_pred HHHh
Confidence 6543
No 138
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=50.61 E-value=63 Score=35.67 Aligned_cols=43 Identities=14% Similarity=0.188 Sum_probs=38.5
Q ss_pred cchhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 019120 73 PVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPD 119 (346)
Q Consensus 73 pv~Dfys~~p~~Ps~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~ 119 (346)
+..|.|..+ .+|..++-.++++|+.+++.-++|+|+...-.++
T Consensus 100 tLke~l~~l----~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g 142 (660)
T KOG4302|consen 100 TLKEQLESL----KPYLEGLRKQKDERRAEFKELYHQIEKLCEELGG 142 (660)
T ss_pred cHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 688999988 8999999999999999999999999998775554
No 139
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=50.12 E-value=1e+02 Score=29.00 Aligned_cols=34 Identities=9% Similarity=0.121 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 135 QVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD 168 (346)
Q Consensus 135 ~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~ 168 (346)
.....+...+-.|..++..||..|++.|+.....
T Consensus 85 ~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ 118 (247)
T PF06705_consen 85 EKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQD 118 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4444555566688888888888888888764443
No 140
>PRK10325 heat shock protein GrpE; Provisional
Probab=50.08 E-value=94 Score=29.06 Aligned_cols=82 Identities=15% Similarity=0.120 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHV---AAKAESIHQYVETMKTA 164 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaL---AArva~LHe~Ve~lKe~ 164 (346)
-|.++..+||+.=.+..+.++++-+.-.. ..+.+|-.++.++...+-+. ...+..|++.|+.....
T Consensus 61 ~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~-----------~~~~~lLpv~DnlerAl~~~~~~~~~~~~l~~Gv~m~~~~ 129 (197)
T PRK10325 61 GILRVKAEMENLRRRTELDIEKAHKFALE-----------KFINELLPVIDSLDRALEVADKANPDMSAMVEGIELTLKS 129 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhHHhHHHHHHhcccccchhHHHHHHHHHHHHHH
Confidence 35677777777777777777776655331 23456667777777765432 13567899999999999
Q ss_pred HHHHHHhc-----CCCCCccc
Q 019120 165 YLADQRRR-----GDGSDPFL 180 (346)
Q Consensus 165 YL~~~Rr~-----GD~~DPFa 180 (346)
+++.-..+ +..-+||+
T Consensus 130 l~~~L~~~Gv~~i~~~G~~FD 150 (197)
T PRK10325 130 MLDVVRKFGVEVIAETNVPLD 150 (197)
T ss_pred HHHHHHHCcCeeeCCCCCCCC
Confidence 98876643 33456773
No 141
>KOG3067 consensus Translin family protein [General function prediction only]
Probab=49.98 E-value=87 Score=30.17 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=19.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 132 SLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLA 167 (346)
Q Consensus 132 ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~ 167 (346)
.|+..|+++||-+..+-....--.++++++|..|..
T Consensus 38 ~iq~~L~~vhq~~~~i~k~~~~are~~~~~kq~~~~ 73 (226)
T KOG3067|consen 38 EIQLLLQNVHQNENLIPKECGLAREDLENIKQKYRM 73 (226)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 445566666665544444444444555555555544
No 142
>PRK14145 heat shock protein GrpE; Provisional
Probab=49.94 E-value=95 Score=29.31 Aligned_cols=73 Identities=16% Similarity=0.174 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD 168 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~ 168 (346)
|.++..+||++-.+..+.++++.+.-. .....+|-.++.++-.++-+ ...+..|++.|+....++++.
T Consensus 68 ~lR~~AEfeN~rkR~~kE~e~~~~~a~-----------e~~~~~LLpV~DnLerAl~~-~~~~~~l~~Gv~mi~k~l~~v 135 (196)
T PRK14145 68 AQRLKAEFENYRKRTEKEKSEMVEYGK-----------EQVILELLPVMDNFERALAS-SGDYNSLKEGIELIYRQFKKI 135 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhHHhHHHHHHhc-cccHHHHHHHHHHHHHHHHHH
Confidence 345555666655555555555544422 02244555566666655543 344677888999999999887
Q ss_pred HHhcC
Q 019120 169 QRRRG 173 (346)
Q Consensus 169 ~Rr~G 173 (346)
-.++|
T Consensus 136 L~k~G 140 (196)
T PRK14145 136 LDKFG 140 (196)
T ss_pred HHHCC
Confidence 76433
No 143
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=49.92 E-value=4.7e+02 Score=30.35 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHhhhc
Q 019120 6 AQLQERMAVVKDMLRNTEIAVRSFMML 32 (346)
Q Consensus 6 ~~~~~l~~~V~~~lrntE~Avrs~~~l 32 (346)
+-|+|||.+..+.--+-|.|-..|.+|
T Consensus 365 ~Dl~el~~rledir~emDd~~~~f~lL 391 (1102)
T KOG1924|consen 365 DDLEELSGRLEDIRAEMDDANEVFELL 391 (1102)
T ss_pred hhHHHHHhHHHhhhhhhccHHHHHHHH
Confidence 678899988888888888888888875
No 144
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=49.77 E-value=79 Score=32.97 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 95 RFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQ 169 (346)
Q Consensus 95 ~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~ 169 (346)
=+++||.+.+.+|+.+|+.|..... + ..-+.+..-++.+.+-.-.|..+++-|+..+++++.......
T Consensus 167 L~~~Rl~~L~~qi~~~~~~l~~~~~-~------~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~ 234 (475)
T PF10359_consen 167 LIQERLDELEEQIEKHEEKLGELEL-N------PDDPELKSDIEELERHISSLKERIEFLENMLEDLEDSESSSD 234 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccc-c------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 3456666666666666666553221 0 012455666677766677777788888888877777654433
No 145
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=49.76 E-value=32 Score=32.27 Aligned_cols=86 Identities=9% Similarity=-0.031 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccc---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSL---LQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQ 169 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~t---pQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~ 169 (346)
=..||++|...-.|+..||+++-.... ....... .+.=..+|.++|.-+- ..+|+.|.+.++++.+.--+..
T Consensus 76 KK~~E~ql~q~~~ql~nLEq~~~~iE~---a~~~~ev~~aLk~g~~aLK~~~k~~~--idkVd~lmDei~E~~e~~~EIs 150 (191)
T PTZ00446 76 KKLYEQEIENILNNRLTLEDNMINLEN---MHLHKIAVNALSYAANTHKKLNNEIN--TQKVEKIIDTIQENKDIQEEIN 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHH
Confidence 355777777777777777776663321 1011112 2233466777777763 5688888888888888777777
Q ss_pred HhcCCC-CCccchhh
Q 019120 170 RRRGDG-SDPFLEAD 183 (346)
Q Consensus 170 Rr~GD~-~DPFaEad 183 (346)
..++.. -|.++|.+
T Consensus 151 eaLs~~~~~~~DEdE 165 (191)
T PTZ00446 151 QALSFNLLNNVDDDE 165 (191)
T ss_pred HHHcCCCCCCCCHHH
Confidence 655533 24455555
No 146
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=49.47 E-value=81 Score=31.92 Aligned_cols=20 Identities=40% Similarity=0.552 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019120 94 ARFEKYLGEFRQWIEELEQL 113 (346)
Q Consensus 94 ~~FE~rL~~YRqqIEELE~~ 113 (346)
-+||+.+.++..+|+||.+.
T Consensus 9 l~fe~~i~el~~~i~~l~~~ 28 (322)
T CHL00198 9 PDFMKPLAELESQVEELSKL 28 (322)
T ss_pred cchhhhHHHHHHHHHHHHhh
Confidence 36999999999999999886
No 147
>TIGR02550 flagell_flgL flagellar hook-associated protein 3. This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; members of the family vary between 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC.
Probab=49.28 E-value=75 Score=30.11 Aligned_cols=77 Identities=14% Similarity=0.239 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Q 019120 94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAA------KAESIHQYVETMKTAYLA 167 (346)
Q Consensus 94 ~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAA------rva~LHe~Ve~lKe~YL~ 167 (346)
+.-..++.+|.+.|++....|.... ..+..|...|.++.+..|..+. ..+.|.++++.++++.+.
T Consensus 52 ~~~~~~~~~~~~n~~~~~~~l~~~~---------~~L~~i~~~l~~~~~~~v~a~ngt~~~~~~~~ia~e~~~l~~~i~~ 122 (306)
T TIGR02550 52 NQELAQLEQYQKNIDDAKNWLSQTE---------TALSSVGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVN 122 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3344566777788888888877433 3478899999999998887654 677888889999988777
Q ss_pred HHHhc-CCCCCcc
Q 019120 168 DQRRR-GDGSDPF 179 (346)
Q Consensus 168 ~~Rr~-GD~~DPF 179 (346)
.--.. -+.+-.|
T Consensus 123 ~~Nt~~~~G~ylF 135 (306)
T TIGR02550 123 LANTKDGNGRYIF 135 (306)
T ss_pred HHCCCCCCCceee
Confidence 55422 3334444
No 148
>PRK14154 heat shock protein GrpE; Provisional
Probab=49.15 E-value=1.3e+02 Score=28.77 Aligned_cols=81 Identities=12% Similarity=0.124 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA---AKAESIHQYVETMKTAY 165 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLA---Arva~LHe~Ve~lKe~Y 165 (346)
|.++..+||++-++..+.++++.+.-. ...+.+|-.++.++-...-+.. ..+..|.+.|+....+|
T Consensus 75 ~lRl~ADfeNyRKR~~kE~e~~~~~a~-----------e~~~~~LLpVlDnLeRAL~~~~~~~~~~~~l~eGvemi~k~l 143 (208)
T PRK14154 75 YLRAQAEMDNLRKRIEREKADIIKFGS-----------KQLITDLLPVADSLIHGLESPASEDPQVKSMRDGMSLTLDLL 143 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhhHHhHHHHHHhcccccchhHHHHHHHHHHHHHHH
Confidence 345555555555555555544443322 0123445555555555544322 23678888899998898
Q ss_pred HHHHHhcC----CC--CCccc
Q 019120 166 LADQRRRG----DG--SDPFL 180 (346)
Q Consensus 166 L~~~Rr~G----D~--~DPFa 180 (346)
++.-.++| |. -+||+
T Consensus 144 ~~vL~k~GVe~I~~~~G~~FD 164 (208)
T PRK14154 144 HNTLAKHGVQVINPNPGDPFD 164 (208)
T ss_pred HHHHHHCCCEEecCCCCCCCC
Confidence 88776544 43 57783
No 149
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=48.98 E-value=1.3e+02 Score=35.09 Aligned_cols=62 Identities=10% Similarity=0.235 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019120 94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRR 171 (346)
Q Consensus 94 ~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~Rr 171 (346)
..++.++..++++++++|+.+...+ .+....+.++|+ +..+++.+.++++.+++...+.|+.
T Consensus 176 ~~lqae~~~l~~~~~~l~~~l~s~~-------------~~~~L~~~q~dl---~~~~~~~l~~~~~~Lq~~in~kR~~ 237 (1109)
T PRK10929 176 TALQAESAALKALVDELELAQLSAN-------------NRQELARLRSEL---AKKRSQQLDAYLQALRNQLNSQRQR 237 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccH-------------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677778888888888877332 345666677776 5568999999999999988777764
No 150
>PRK14151 heat shock protein GrpE; Provisional
Probab=48.93 E-value=1.1e+02 Score=28.31 Aligned_cols=81 Identities=14% Similarity=0.139 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA---AKAESIHQYVETMKTA 164 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLA---Arva~LHe~Ve~lKe~ 164 (346)
-|.++..+||+.=.+.++.++++.+.-.. ....+|-.++.++-...-+.- ..+..|++.|+.....
T Consensus 42 ~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~-----------~~~~~LLpv~DnlerAl~~~~~~~~~~~~~~~Gv~mi~k~ 110 (176)
T PRK14151 42 QSLRAAADLQNVRRRAEQDVEKAHKFALE-----------KFAGDLLPVVDSLERGLELSSADDEAIKPMREGVELTLKM 110 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhHHhHHHHHHhcccccchhHHHHHHHHHHHHHH
Confidence 34556666666666666665555544320 224455556666655554321 2357788899988888
Q ss_pred HHHHHHhcC-----CCCCcc
Q 019120 165 YLADQRRRG-----DGSDPF 179 (346)
Q Consensus 165 YL~~~Rr~G-----D~~DPF 179 (346)
+++.-.++| -.-+||
T Consensus 111 l~~~L~k~Gv~~i~~~G~~F 130 (176)
T PRK14151 111 FQDTLKRYQLEAVDPHGEPF 130 (176)
T ss_pred HHHHHHHCCCEEeCCCCCCC
Confidence 888666433 234677
No 151
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=48.62 E-value=89 Score=38.53 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 87 AFLQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 87 ~YF~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
.=++++|+++++++..||+||||.|....
T Consensus 1853 ~~~q~~~dkl~~k~~~~krQleeaE~~~~ 1881 (1930)
T KOG0161|consen 1853 ERLQDLVDKLQAKIKQYKRQLEEAEEEAN 1881 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44677788888888888888888887644
No 152
>PRK04325 hypothetical protein; Provisional
Probab=47.91 E-value=38 Score=27.00 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 92 TVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 92 lV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
-|.++|.+|..-...||+|-..|.
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~ 33 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVA 33 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666655555
No 153
>PRK14141 heat shock protein GrpE; Provisional
Probab=47.88 E-value=1.1e+02 Score=29.19 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=30.5
Q ss_pred cccHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhc-----CCCCCcc
Q 019120 130 LQSLPQVISNVHIFFVHVA--------AKAESIHQYVETMKTAYLADQRRR-----GDGSDPF 179 (346)
Q Consensus 130 pQ~L~~~L~~~hq~FvaLA--------Arva~LHe~Ve~lKe~YL~~~Rr~-----GD~~DPF 179 (346)
+.+|-.++.++...+-++- ..+..|++.|+....++++.-.++ +-.-++|
T Consensus 84 ~~dLLpViDnLerAl~~~~~~~~~~~~~~~~~l~eGv~mi~k~l~~vLek~GV~~I~~~Ge~F 146 (209)
T PRK14141 84 ARDMLSVSDNLRRALDAIPAEARAAADAGLKALIEGVEMTERAMLNALERHGVKKLDPEGQKF 146 (209)
T ss_pred HHHHhhhHhHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCC
Confidence 3455555666655544321 236788888888888888866532 2334666
No 154
>PRK12803 flagellin; Provisional
Probab=47.40 E-value=92 Score=31.35 Aligned_cols=77 Identities=12% Similarity=0.038 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q 019120 95 RFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA------AKAESIHQYVETMKTAYLAD 168 (346)
Q Consensus 95 ~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLA------Arva~LHe~Ve~lKe~YL~~ 168 (346)
.-..++.+|.+.|.+....|+... ..++.+...|+++.+..|+.+ ...+.|.++|+.++++.+..
T Consensus 54 s~i~~l~q~~~Ni~~a~s~lqtae---------~aL~~i~~~LqrirELavqA~Ngt~s~~dR~ai~~Ei~qL~~~i~~i 124 (335)
T PRK12803 54 AQIRGLSQASRNTSKAINFIQTTE---------GNLNEVEKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRI 124 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777777888887877443 248899999999999999874 57889999999999998776
Q ss_pred HH-hcCCCCCccc
Q 019120 169 QR-RRGDGSDPFL 180 (346)
Q Consensus 169 ~R-r~GD~~DPFa 180 (346)
-. ..-+.+..|.
T Consensus 125 an~t~fnG~~lf~ 137 (335)
T PRK12803 125 ADQAQYNQMHMLS 137 (335)
T ss_pred HHhCCcCCeeecc
Confidence 65 3344555663
No 155
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=47.35 E-value=1.1e+02 Score=29.77 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTA 164 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~ 164 (346)
|..-|.++|.+++..+.+|+.+|..|..... . .-..+|..-|....+--..|=..+..|+++++++.+.
T Consensus 57 le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~--~-----~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~ 125 (239)
T COG1579 57 LENQVSQLESEIQEIRERIKRAEEKLSAVKD--E-----RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKE 125 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777777632111 0 1233444444444444444444555555554444443
No 156
>COG5293 Predicted ATPase [General function prediction only]
Probab=47.33 E-value=73 Score=34.26 Aligned_cols=89 Identities=20% Similarity=0.330 Sum_probs=57.2
Q ss_pred chhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCCCCCCCCCccccccHHHHHHHHHHHHHHHH
Q 019120 74 VFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLIL-----LDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA 148 (346)
Q Consensus 74 v~Dfys~~p~~Ps~YF~qlV~~FE~rL~~YRqqIEELE~~L~-----s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLA 148 (346)
|+.||+.+..-=..||++-+.+.|.+|......|.+|-+.+. +.+. -.+.+++..++-+-+--.-||
T Consensus 325 v~~F~r~~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~--------g~~e~y~~l~ee~~~~~~ela 396 (591)
T COG5293 325 VIAFNRAITEERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNR--------GVFEKYQTLCEEIIALRGELA 396 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CcHHHHHHHHHHHHHHhhhHH
Confidence 667888887777889999998888888877776665544322 1111 125566666665544444443
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHH
Q 019120 149 ---------AKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 149 ---------Arva~LHe~Ve~lKe~YL~~~R 170 (346)
-|++.+.++|+.+|+.-|..-+
T Consensus 397 e~~~rie~l~k~~~~~~~i~~lkhe~l~~~~ 427 (591)
T COG5293 397 ELEYRIEPLRKLHALDQYIGTLKHECLDLEE 427 (591)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667778888877776544
No 157
>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.22 E-value=93 Score=33.04 Aligned_cols=10 Identities=40% Similarity=0.441 Sum_probs=4.6
Q ss_pred CCccccCCCC
Q 019120 197 VHPTLHLPVN 206 (346)
Q Consensus 197 v~Pt~~lPA~ 206 (346)
+.|+.-|+.+
T Consensus 184 ~~p~c~ltp~ 193 (487)
T KOG2724|consen 184 VAPTCKLTPP 193 (487)
T ss_pred cccccccCcc
Confidence 4455554433
No 158
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=47.21 E-value=84 Score=28.66 Aligned_cols=62 Identities=13% Similarity=0.111 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 91 QTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMK 162 (346)
Q Consensus 91 qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lK 162 (346)
+++.+|...-..+...|++|+.|..... -.+.|...+..+.+-...+..+|...+..|..+-
T Consensus 2 ~~~~~L~~~d~~L~~~L~~l~~hq~~~~----------~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 2 ELAEDLIEADDELSSALEELQEHQENQA----------RIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888899999998876433 2677788888888888888888888887777776
No 159
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=47.18 E-value=1.3e+02 Score=31.21 Aligned_cols=41 Identities=7% Similarity=-0.006 Sum_probs=21.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 130 LQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 130 pQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
+.+|...+..+.+-...+-.++..+.+++++++++.-.+++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 166 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQN 166 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555444555555555555555555555444433
No 160
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=47.11 E-value=76 Score=31.49 Aligned_cols=25 Identities=12% Similarity=0.085 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQ 112 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~ 112 (346)
.+.+++++++.=-.+=++-+++|..
T Consensus 196 ~Lr~~l~~l~~lk~eR~~l~~~Lk~ 220 (339)
T cd09238 196 TLRSNLEELEALGNERAGIEDMMKA 220 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554433333333444433
No 161
>PRK14153 heat shock protein GrpE; Provisional
Probab=46.71 E-value=1.2e+02 Score=28.52 Aligned_cols=83 Identities=18% Similarity=0.213 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 019120 87 AFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHV--AAKAESIHQYVETMKTA 164 (346)
Q Consensus 87 ~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaL--AArva~LHe~Ve~lKe~ 164 (346)
..|.++..+||+.-.+.++.++++.+.-.. ..+.+|-.++.++....-+. -..+..|++.|+.+..+
T Consensus 54 d~~lR~~AEfeN~rKR~~kE~e~~~~~a~~-----------~~~~~LLpv~DnLerAl~~~~~~~~~~~l~~Gvemi~k~ 122 (194)
T PRK14153 54 EQLFRLAAEFDNFRKRTAREMEENRKFVLE-----------QVLLDLLEVTDNFERALESARTAEDMNSIVEGIEMVSKQ 122 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhHHhHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 345677888888888777777776655331 12344555555555544322 12357788999999999
Q ss_pred HHHHHHhc-----CCCCCccc
Q 019120 165 YLADQRRR-----GDGSDPFL 180 (346)
Q Consensus 165 YL~~~Rr~-----GD~~DPFa 180 (346)
|++.-.++ +-..|||+
T Consensus 123 ~~~vL~k~Gv~~I~~~G~~FD 143 (194)
T PRK14153 123 FFSILEKYGLERIECEGEEFD 143 (194)
T ss_pred HHHHHHHCCCeeeCCCCCCCC
Confidence 99866643 33457773
No 162
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=46.68 E-value=75 Score=35.49 Aligned_cols=65 Identities=17% Similarity=0.226 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMK 162 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lK 162 (346)
+..-+.+++++|+.++++|+.+|+.|...+= .. -+|++ +++.-.+-...+-.+++.|.+.++++|
T Consensus 809 ~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F--~~----KAP~~---vve~e~~kl~~~~~~~~~l~~~l~~l~ 873 (874)
T PRK05729 809 VEAELARLEKELAKLEKEIERVEKKLSNEGF--VA----KAPEE---VVEKEREKLAEYEEKLAKLKERLARLK 873 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchh--hh----cCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5667889999999999999999998773220 00 23433 344444444455556666666666654
No 163
>PRK14162 heat shock protein GrpE; Provisional
Probab=46.58 E-value=1.1e+02 Score=28.65 Aligned_cols=81 Identities=12% Similarity=0.144 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA--AKAESIHQYVETMKTAY 165 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLA--Arva~LHe~Ve~lKe~Y 165 (346)
-|.++..+||+.-.++.+.++++.+.-.. ....+|-.++.++-.++-+.. ..+..|++.|+....++
T Consensus 61 ~~lR~~AEfeN~rkR~~kE~e~~~~~a~~-----------~~~~~LLpV~DnLerAl~~~~~~~~~~~l~~Gvemi~k~l 129 (194)
T PRK14162 61 KYLRSQAEIQNMQNRYAKERAQLIKYESQ-----------SLAKDVLPAMDNLERALAVKADDEAAKQLKKGVQMTLDHL 129 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhHHhHHHHHHhccccchhHHHHHHHHHHHHHHH
Confidence 45566777777777777776666655331 224556666666666654321 23577888999999988
Q ss_pred HHHHHhcC-----CCCCcc
Q 019120 166 LADQRRRG-----DGSDPF 179 (346)
Q Consensus 166 L~~~Rr~G-----D~~DPF 179 (346)
++.-.++| -.-++|
T Consensus 130 ~~vL~~~GV~~I~~~G~~F 148 (194)
T PRK14162 130 VKALKDHGVTEIKADGEKF 148 (194)
T ss_pred HHHHHHCCCEEeCCCCCCC
Confidence 88666433 334666
No 164
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=46.35 E-value=59 Score=29.08 Aligned_cols=71 Identities=7% Similarity=0.155 Sum_probs=39.4
Q ss_pred chhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccc-cHHHHHHHHHHHHHHHHHHH
Q 019120 74 VFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQ-SLPQVISNVHIFFVHVAAKA 151 (346)
Q Consensus 74 v~Dfys~~p~~Ps~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ-~L~~~L~~~hq~FvaLAArv 151 (346)
+..||..+-.+=..++..+++.|++++..|+.-++++|.. ++ .-+..+.++ +|...+..+.+.+..+-..+
T Consensus 51 iK~y~~~vh~pll~~~~~~~~~~~~~l~~~~~~~~~vd~~----~~---a~i~e~~L~~el~~~l~~~~~~~~~~~~~~ 122 (204)
T PF04740_consen 51 IKNYFSEVHIPLLQGLILLLEEYQEALKFIKDFQSEVDSS----SN---AIIDEDFLESELKKKLNQLKEQIEDLQDEI 122 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccc----cc---ccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677776533335666777777777777777666665521 00 011113344 56666666666665554444
No 165
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=46.35 E-value=1.3e+02 Score=28.72 Aligned_cols=74 Identities=14% Similarity=0.102 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD 168 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~ 168 (346)
|..+++..|..-.+..+..|+|+..+...- .....++.....+..+.-..|-..+..+...|++.|-.|-.+
T Consensus 67 W~~iL~ete~~A~~~~~~ae~l~~~i~~~l--------~~l~~~~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~ 138 (237)
T cd07657 67 WKEIMDSTDQLSKLIKQHAEALESGTLDKL--------TLLIKDKRKAKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKL 138 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999888765110 012345555555565666677778888899999999999998
Q ss_pred HH
Q 019120 169 QR 170 (346)
Q Consensus 169 ~R 170 (346)
++
T Consensus 139 ~~ 140 (237)
T cd07657 139 LE 140 (237)
T ss_pred HH
Confidence 87
No 166
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=46.32 E-value=88 Score=30.79 Aligned_cols=67 Identities=21% Similarity=0.245 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLA 167 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~ 167 (346)
+++.-+++|..|....+|+++|+..+..... -+..|..-+. |+|=|. +-+++.|+-+|+.+|+..-+
T Consensus 72 Lqe~eek~e~~l~~Lq~ql~~l~akI~k~~~---------el~~L~TYkD--~EYPvK-~vqIa~L~rqlq~lk~~qqd 138 (258)
T PF15397_consen 72 LQEWEEKEESKLSKLQQQLEQLDAKIQKTQE---------ELNFLSTYKD--HEYPVK-AVQIANLVRQLQQLKDSQQD 138 (258)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhh--hhhhHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4556677778888888888888888773321 1334555554 676663 24888888888888875544
No 167
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=46.26 E-value=1.9e+02 Score=24.83 Aligned_cols=78 Identities=9% Similarity=0.083 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 92 TVARFEKYLGEFRQWIEEL--EQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQ 169 (346)
Q Consensus 92 lV~~FE~rL~~YRqqIEEL--E~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~ 169 (346)
-+.++...++++.++|+++ +++..+..+......-....+.|...|+.++..|-.|-.+|..=|++++.+..+.-+.|
T Consensus 34 ~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~ 113 (132)
T PF10392_consen 34 PLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLH 113 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3566666677776666543 11111111000000000123455556666666666666666666666665555555544
No 168
>PRK14163 heat shock protein GrpE; Provisional
Probab=46.18 E-value=1.1e+02 Score=29.33 Aligned_cols=37 Identities=11% Similarity=0.051 Sum_probs=22.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019120 131 QSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRR 172 (346)
Q Consensus 131 Q~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~Rr~ 172 (346)
.+|-.++.++...+-+ ..|++.|+.+...+++.-.++
T Consensus 94 ~~LLpVlDnLerAl~~-----~~l~~Gv~mi~k~l~~~L~k~ 130 (214)
T PRK14163 94 SELLPVLDDVGRAREH-----GELVGGFKSVAESLETTVAKL 130 (214)
T ss_pred HHHhhhHhHHHHHHhc-----hhHHHHHHHHHHHHHHHHHHC
Confidence 3444455555444333 257888888888888866543
No 169
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=46.17 E-value=67 Score=31.64 Aligned_cols=20 Identities=5% Similarity=0.144 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019120 150 KAESIHQYVETMKTAYLADQ 169 (346)
Q Consensus 150 rva~LHe~Ve~lKe~YL~~~ 169 (346)
.|..||++|.++|.+..+++
T Consensus 273 evd~l~k~l~eLrre~r~Lk 292 (293)
T PF09712_consen 273 EVDELYKRLHELRREVRALK 292 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 56666666666665554443
No 170
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=46.12 E-value=1.6e+02 Score=23.91 Aligned_cols=32 Identities=19% Similarity=0.144 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 019120 86 SAFLQQTVARFEKYLGEFRQWIEELEQLILLD 117 (346)
Q Consensus 86 s~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~ 117 (346)
++.+..+-.+|+.-|+..+.+|++||+.+...
T Consensus 34 ~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~iv 65 (97)
T PF09177_consen 34 SEELKWLKRELRNALQSIEWDLEDLEEAVRIV 65 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999843
No 171
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=46.04 E-value=1.6e+02 Score=23.95 Aligned_cols=69 Identities=16% Similarity=0.178 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 019120 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHV-AAKAESIHQYVETMKTA 164 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaL-AArva~LHe~Ve~lKe~ 164 (346)
+..+...+..++.+|+.|+..++-..+.+ ...+++.+|...=+.+....-.| +-|.+.|.++|+.+|..
T Consensus 14 ~e~~~~e~~~L~~~~~~L~~~~R~~~Ged---L~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~k 83 (100)
T PF01486_consen 14 HEELQQEIAKLRKENESLQKELRHLMGED---LESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKK 83 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccc---ccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888999999999999988433312 22356777776666666666544 22444555555555543
No 172
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=45.79 E-value=3.4e+02 Score=27.48 Aligned_cols=79 Identities=18% Similarity=0.167 Sum_probs=56.4
Q ss_pred chhhccCCCCCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHH
Q 019120 74 VFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQ-WIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAE 152 (346)
Q Consensus 74 v~Dfys~~p~~Ps~YF~qlV~~FE~rL~~YRq-qIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva 152 (346)
++.-+....+.|-+=+.+.+++=.--..+||| +-+|.|.++-- +++|...-+.+- -++.
T Consensus 213 ~ie~s~~~~~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge-------------~~~Le~rN~~LK-------~qa~ 272 (294)
T KOG4571|consen 213 QIEKSAHPYKTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGE-------------LEGLEKRNEELK-------DQAS 272 (294)
T ss_pred cccccCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHH-------HHHH
Confidence 34556677788889999998888888889998 45566665431 334454444443 3788
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 019120 153 SIHQYVETMKTAYLADQRRR 172 (346)
Q Consensus 153 ~LHe~Ve~lKe~YL~~~Rr~ 172 (346)
+||-+|..+|+.+|+.++++
T Consensus 273 ~lerEI~ylKqli~e~~~~r 292 (294)
T KOG4571|consen 273 ELEREIRYLKQLILEVYKKR 292 (294)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 88999999999999877654
No 173
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=45.62 E-value=99 Score=30.59 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLILLD 117 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~s~ 117 (346)
+.+++++.+.=-.+=++-|++|+...+.+
T Consensus 193 Lr~ll~kl~~lk~eR~~l~~~Lk~k~~~D 221 (337)
T cd09234 193 LKRILNKVNEMRKQRRSLEQQLRDAIHED 221 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44455555555555555555665544433
No 174
>PRK12804 flagellin; Provisional
Probab=45.54 E-value=80 Score=30.61 Aligned_cols=82 Identities=9% Similarity=0.079 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 019120 92 TVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAA-------KAESIHQYVETMKTA 164 (346)
Q Consensus 92 lV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAA-------rva~LHe~Ve~lKe~ 164 (346)
.+.++..++..|++.+.-+...+...... ...++.|...|.++.+..|..+. ..+.|.++|+.++++
T Consensus 48 ~~~~l~~~~~~~~~~~~n~~~~~s~l~~a------d~~l~~i~~~l~r~rel~v~a~n~gt~s~~dr~~i~~E~~~l~~~ 121 (301)
T PRK12804 48 ISEKMRGQIRGLEMASKNAQDGISLIQTA------EGALTETHSILQRVRELVVQAGNTGTQDGTDLGAIQDEIKALVDE 121 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Confidence 36677766666666655555544422110 13478899999999999998753 788899999999999
Q ss_pred HHHHHH-hcCCCCCcc
Q 019120 165 YLADQR-RRGDGSDPF 179 (346)
Q Consensus 165 YL~~~R-r~GD~~DPF 179 (346)
.+.+-. ...+.+..|
T Consensus 122 i~~~an~~~~nG~~lf 137 (301)
T PRK12804 122 IDGISDRTEFNGKKLL 137 (301)
T ss_pred HHHHHHhCCCCCeeee
Confidence 887654 333445555
No 175
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=45.51 E-value=42 Score=28.00 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 87 AFLQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 87 ~YF~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
+|+...+.++|+++..++.+|+++|..|+
T Consensus 77 e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 77 ETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 176
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=45.43 E-value=2.4e+02 Score=26.32 Aligned_cols=93 Identities=15% Similarity=0.177 Sum_probs=48.8
Q ss_pred chhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCCCCCccccccHH-------HHHHHHHHHHH
Q 019120 74 VFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLIL-LDPDRNSSSHGSSLLQSLP-------QVISNVHIFFV 145 (346)
Q Consensus 74 v~Dfys~~p~~Ps~YF~qlV~~FE~rL~~YRqqIEELE~~L~-s~s~~~~S~~gs~tpQ~L~-------~~L~~~hq~Fv 145 (346)
|-|.|...-+---+++..+|+.||+.+.++....+++..... -.....+. ...+.|- .+.-.+|+..+
T Consensus 31 ve~~~l~~lkqqqd~itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~----~l~d~inE~t~k~~El~~~i~el~~ 106 (165)
T PF09602_consen 31 VEQQTLKKLKQQQDWITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGN----SLNDSINEWTDKLNELSAKIQELLL 106 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445555443333445666677777777777666666555422 11000000 0111111 22222333333
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 146 ----HVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 146 ----aLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
+....|.++|..+++.-..|+++++
T Consensus 107 ~~~Ks~~~~l~q~~~~~eEtv~~~ieqqk 135 (165)
T PF09602_consen 107 SPSKSSFSLLSQISKQYEETVKQLIEQQK 135 (165)
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5566777778888888888999887
No 177
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=45.32 E-value=2.1e+02 Score=24.95 Aligned_cols=51 Identities=18% Similarity=0.300 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHH
Q 019120 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAE 152 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva 152 (346)
-..|+++..++++.|.||..+|+..++. |.+=...+-.+|+.+|.|.+-+-
T Consensus 32 k~~f~~~~~~~~~~~~eL~~~v~~lGg~---------p~~~gs~~g~lhr~w~~lks~~~ 82 (139)
T TIGR02284 32 ATLFRRIAGEKSAIVSELQQVVASLGGK---------PEDHGSMVGSLHQFWGKIRATLT 82 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CCCCCcHHHHHHHHHHHHHHHHc
Confidence 5668888999999999999999966642 22224567889999998877653
No 178
>PRK11519 tyrosine kinase; Provisional
Probab=45.28 E-value=91 Score=33.96 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 019120 92 TVARFEKYLGEFRQWIEELEQLILL 116 (346)
Q Consensus 92 lV~~FE~rL~~YRqqIEELE~~L~s 116 (346)
.++-+|+||...++++++.|+.|..
T Consensus 268 a~~fL~~ql~~l~~~L~~aE~~l~~ 292 (719)
T PRK11519 268 SLAFLAQQLPEVRSRLDVAENKLNA 292 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777778888888887773
No 179
>PRK14158 heat shock protein GrpE; Provisional
Probab=45.24 E-value=1.1e+02 Score=28.80 Aligned_cols=81 Identities=19% Similarity=0.225 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA-AKAESIHQYVETMKTAYLA 167 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLA-Arva~LHe~Ve~lKe~YL~ 167 (346)
|.++..+||+.-.+.++.++++.+.-. .....+|-.++.++-...-+.- ..+..|++.|+....++++
T Consensus 63 ~lR~~AefeN~RkR~~kE~e~~~~~a~-----------~~~~~~lLpV~DnLerAl~~~~~~~~~~i~~Gv~mi~k~l~~ 131 (194)
T PRK14158 63 YLRERADLENYRKRVQKEKEELLKYGN-----------ESLILEILPAVDNMERALDHADEESMSAIIEGIRMTLSMLLS 131 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhHHhHHHHHHhccCcchHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444444322 0223445555555555543221 2357788999999999998
Q ss_pred HHHhcC----C--CCCccc
Q 019120 168 DQRRRG----D--GSDPFL 180 (346)
Q Consensus 168 ~~Rr~G----D--~~DPFa 180 (346)
.-.++| + .-+||+
T Consensus 132 vLek~Gv~~I~~~~G~~FD 150 (194)
T PRK14158 132 TLKKFGVTPVEAEKGTPFD 150 (194)
T ss_pred HHHHCCCEEecCCCCCCCC
Confidence 776544 3 357883
No 180
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=45.14 E-value=84 Score=28.48 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHHhhchHHHH
Q 019120 3 RQKAQLQERMAVVKDMLRNTEIAV 26 (346)
Q Consensus 3 r~k~~~~~l~~~V~~~lrntE~Av 26 (346)
+|.+.+++.++..++.++..|.+.
T Consensus 68 ~e~~~~~~~l~ea~~~i~~i~~~~ 91 (199)
T PF10112_consen 68 REYEYIREILEEAKEKIRRIEKAI 91 (199)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444444
No 181
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=45.13 E-value=1.1e+02 Score=28.93 Aligned_cols=76 Identities=20% Similarity=0.224 Sum_probs=42.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHH--------HHHHHHHHHH---HHHHHH
Q 019120 86 SAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVIS--------NVHIFFVHVA---AKAESI 154 (346)
Q Consensus 86 s~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~--------~~hq~FvaLA---Arva~L 154 (346)
..|..+-|+.+|++|...++.++.|=++..-..+. ..++...+. .+-+.+-.|| ++|+.+
T Consensus 6 ~k~i~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~---------~~~fak~~~~la~~E~~~L~~~L~~lae~~~~i~d~ 76 (211)
T cd07598 6 TKFIQERITNVEKHFGELCQDFAAYTRKTARLRDK---------GDELAKSINAYADTENPSLKQGLKNFAECLAALQDY 76 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH
Confidence 35677778888888888888877777765522210 122222222 2333444444 455555
Q ss_pred HHH-HHHHHHHHHHHHH
Q 019120 155 HQY-VETMKTAYLADQR 170 (346)
Q Consensus 155 He~-Ve~lKe~YL~~~R 170 (346)
|+. ++.+-..+.+--+
T Consensus 77 ~q~qv~~l~~~v~epLk 93 (211)
T cd07598 77 RQAEVERLEAKVVQPLA 93 (211)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 444 6666666666665
No 182
>PRK04863 mukB cell division protein MukB; Provisional
Probab=45.11 E-value=2.2e+02 Score=34.43 Aligned_cols=79 Identities=14% Similarity=0.089 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 019120 90 QQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKT------ 163 (346)
Q Consensus 90 ~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe------ 163 (346)
.+.+...+.++..|++.|+++|+.=..+... ..+..+|...++++.+..-.+-.++..+.+++..+++
T Consensus 403 qqel~elQ~el~q~qq~i~~Le~~~~~~~~~------~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~ 476 (1486)
T PRK04863 403 QQALDVQQTRAIQYQQAVQALERAKQLCGLP------DLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFE 476 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777765544421 1456788888888887777776666666666555544
Q ss_pred -HHHHHHHhcCC
Q 019120 164 -AYLADQRRRGD 174 (346)
Q Consensus 164 -~YL~~~Rr~GD 174 (346)
.|-.+++..|.
T Consensus 477 ~~~~~l~~~~Gk 488 (1486)
T PRK04863 477 QAYQLVRKIAGE 488 (1486)
T ss_pred HHHHHHHHHcCC
Confidence 45555555563
No 183
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=45.11 E-value=94 Score=30.47 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 019120 96 FEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 96 FE~rL~~YRqqIEELE~~L~ 115 (346)
|++.|+.|..-+.+|++.+.
T Consensus 245 f~~eL~kf~~~~~~i~~~~~ 264 (342)
T cd08915 245 FEEHLKKFDKDLTYVEKTKK 264 (342)
T ss_pred HHHHHHHHhHHHHHHHHHHH
Confidence 34444444444444444443
No 184
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=45.09 E-value=2.2e+02 Score=27.44 Aligned_cols=61 Identities=18% Similarity=0.147 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 92 TVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAY 165 (346)
Q Consensus 92 lV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~Y 165 (346)
.+.+||+-...+.+.++.+|+-=. -++++..-|..+.+=.+.....|..||+.|+.|-...
T Consensus 9 K~~~lek~k~~i~~e~~~~e~ee~-------------~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iI 69 (230)
T PF10146_consen 9 KTLELEKLKNEILQEVESLENEEK-------------CLEEYRKEMEELLQERMAHVEELRQINQDINTLENII 69 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555444311 1345555666666666666666666666655554443
No 185
>PF14772 NYD-SP28: Sperm tail
Probab=45.03 E-value=1.7e+02 Score=23.97 Aligned_cols=74 Identities=14% Similarity=0.118 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 019120 91 QTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAK----AESIHQYVETMKTAYL 166 (346)
Q Consensus 91 qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAAr----va~LHe~Ve~lKe~YL 166 (346)
.+.+++++....++...++|+..-...-. ..-|++|..-|+.|.+.|-.+=.+ +..|.+.|+..-++|.
T Consensus 21 ~~~~kl~~E~~~s~~~~~~I~~~W~~i~~-------~~~~~eL~~~ie~q~~~~e~ii~~Kd~lI~~L~~eL~~~deqy~ 93 (104)
T PF14772_consen 21 ERREKLEEEEKESRANFEKINERWREILR-------KKKPQELRKEIEEQKQACERIIDRKDALIKELQQELKEADEQYV 93 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666665442111 134899999999999999976544 5666777888888898
Q ss_pred HHHHh
Q 019120 167 ADQRR 171 (346)
Q Consensus 167 ~~~Rr 171 (346)
...|+
T Consensus 94 ~~lr~ 98 (104)
T PF14772_consen 94 KALRK 98 (104)
T ss_pred HHHHH
Confidence 87774
No 186
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=44.77 E-value=1.8e+02 Score=26.99 Aligned_cols=11 Identities=0% Similarity=0.193 Sum_probs=5.2
Q ss_pred CCCCccchhhH
Q 019120 174 DGSDPFLEADR 184 (346)
Q Consensus 174 D~~DPFaEadr 184 (346)
|..+.+..-+|
T Consensus 160 ~~~~a~~~fer 170 (219)
T TIGR02977 160 RSDEAMARFEQ 170 (219)
T ss_pred CchhHHHHHHH
Confidence 44455544444
No 187
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=44.77 E-value=1.9e+02 Score=28.17 Aligned_cols=79 Identities=11% Similarity=0.086 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 019120 91 QTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVH---VAAKAESIHQYVETMKTAYLA 167 (346)
Q Consensus 91 qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~Fva---LAArva~LHe~Ve~lKe~YL~ 167 (346)
.+.+++++.|+.....+...-..|......... .....++.|.+.|.++.|+-+- |-..|...+++|+.+.++|-.
T Consensus 9 ~t~~~i~~eL~~~~~l~~~yta~l~~~~~~~~~-~~~~~~~~lke~L~n~RQ~e~fLr~ll~dl~~~~~~V~~l~~~~~~ 87 (281)
T PF12018_consen 9 ATTEHIDTELEEAQELCYRYTAVLEKQSQSPQM-ESELPPELLKEELYNRRQYEIFLRILLSDLITCAQRVEELIKRFEA 87 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666665555444443333322110011 1112345567777766665553 467888888889999888877
Q ss_pred HHH
Q 019120 168 DQR 170 (346)
Q Consensus 168 ~~R 170 (346)
...
T Consensus 88 ~l~ 90 (281)
T PF12018_consen 88 QLE 90 (281)
T ss_pred HHH
Confidence 654
No 188
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=44.75 E-value=75 Score=27.74 Aligned_cols=39 Identities=10% Similarity=0.149 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 132 SLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 132 ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
.|...+..+...-.....|++.+..+-.++-..+|...+
T Consensus 55 ~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~ 93 (141)
T PF13874_consen 55 EINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLR 93 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555667777888888888888777777664
No 189
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=44.68 E-value=73 Score=32.60 Aligned_cols=73 Identities=14% Similarity=0.240 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC--CCCCCCCCCccccccHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Q 019120 94 ARFEKYLGEFRQWIEELEQLILLD--PDRNSSSHGSSLLQSLPQVISNVHIFFV----------HVAAKAESIHQYVETM 161 (346)
Q Consensus 94 ~~FE~rL~~YRqqIEELE~~L~s~--s~~~~S~~gs~tpQ~L~~~L~~~hq~Fv----------aLAArva~LHe~Ve~l 161 (346)
++|+..+..|+..|++||..|... ..-+.. .++++.-..+.++...+. ....-++.++++|+.+
T Consensus 294 ~~w~~~~~~f~~~i~~lE~~l~~~l~~~f~~~----~s~~~~~~ll~~f~~L~~Rp~I~~~l~~~~~~ll~~~~~ei~~~ 369 (579)
T PF08385_consen 294 EEWERDFSEFRERIEDLERRLANILRQAFDDC----SSPEEAFRLLQKFKSLLNRPRIRKALQEKYEQLLQQFKEEIDQL 369 (579)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----CCHHHHHHHHHHHHhHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999988721 110011 123333333333322211 1112256677778888
Q ss_pred HHHHHHHHH
Q 019120 162 KTAYLADQR 170 (346)
Q Consensus 162 Ke~YL~~~R 170 (346)
|+.|.+.+.
T Consensus 370 ~~~f~~~~~ 378 (579)
T PF08385_consen 370 KKIFDNQKE 378 (579)
T ss_pred HHHHHhccc
Confidence 888877663
No 190
>PRK06663 flagellar hook-associated protein FlgL; Validated
Probab=44.55 E-value=94 Score=31.73 Aligned_cols=68 Identities=12% Similarity=0.139 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Q 019120 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAA------KAESIHQYVETMKTAYL 166 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAA------rva~LHe~Ve~lKe~YL 166 (346)
++.-..++++|...|+.....|.... ..++.|...|+++.+..|..+. ..+.|.++|+.++++.+
T Consensus 53 l~~~~~~~~qy~~ni~~a~s~L~~~d---------saL~~i~~~l~~~rel~v~a~n~t~s~~dr~aia~e~~~l~~~l~ 123 (419)
T PRK06663 53 YKSRLFKLDRYQKNIDDGKDRLRYAE---------GYLQSITNILQRARELAVQGANGTYQADDKKKIAKEIDELLEDLV 123 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45556677788888888888887443 3478899999999998887543 46688888888888866
Q ss_pred HHH
Q 019120 167 ADQ 169 (346)
Q Consensus 167 ~~~ 169 (346)
..-
T Consensus 124 ~~a 126 (419)
T PRK06663 124 DIA 126 (419)
T ss_pred HHH
Confidence 644
No 191
>PF11157 DUF2937: Protein of unknown function (DUF2937); InterPro: IPR022584 This family of proteins with unknown function appears to be found mainly in Proteobacteria.
Probab=44.46 E-value=1.4e+02 Score=27.13 Aligned_cols=68 Identities=12% Similarity=0.016 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHI-FFVHVAAKAESIHQYVETMKTAYLAD 168 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq-~FvaLAArva~LHe~Ve~lKe~YL~~ 168 (346)
..+++-.+.+-+++|++.|+.-....+ .+.+.+-..+++--+ .|-+-|..++.+-++.+++++++..+
T Consensus 29 ~QrL~g~~~e~~~~v~~F~~~A~~~f~--------~~~~~li~~~~~s~dp~~~~~a~~~~~~~~R~~~L~~~~~~l 97 (167)
T PF11157_consen 29 QQRLGGHLDELRRQVAGFQATAARYFG--------GDREALIAHYRQSSDPVFRARAESMQATIERYQRLSQQLQAL 97 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC--------CCHHHHHHHHHhCCCHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566667777777766553322 113333344433333 77778888888888888888877766
No 192
>PF08650 DASH_Dad4: DASH complex subunit Dad4; InterPro: IPR013959 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=44.32 E-value=1.2e+02 Score=24.73 Aligned_cols=49 Identities=14% Similarity=0.267 Sum_probs=32.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-------hcCCCCCcc
Q 019120 131 QSLPQVISNVHIFFVHVAAKAESIHQY---VETMKTAYLADQR-------RRGDGSDPF 179 (346)
Q Consensus 131 Q~L~~~L~~~hq~FvaLAArva~LHe~---Ve~lKe~YL~~~R-------r~GD~~DPF 179 (346)
+-|-.-++++++..+.|=-.++.|..+ |+.+.+.+-+|+| ..|+..|||
T Consensus 14 sRIi~NvekLNEsv~~lN~~l~eIn~~N~~le~~~qm~enY~~nv~fnLe~t~~~~~P~ 72 (72)
T PF08650_consen 14 SRIIGNVEKLNESVAELNQELEEINRANKNLEIVAQMWENYQRNVQFNLEATGNKKEPL 72 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 344556677777777777777777665 5555555555555 488888886
No 193
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=44.29 E-value=1.1e+02 Score=30.61 Aligned_cols=61 Identities=13% Similarity=0.250 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 019120 96 FEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA---AKAESIHQYVETMKTAYLADQ 169 (346)
Q Consensus 96 FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLA---Arva~LHe~Ve~lKe~YL~~~ 169 (346)
|++.|+.|..-+.+|+..+..+. .|-.-|+..|+-|+.+- .....-...+++++..|-+|.
T Consensus 256 f~~eL~kf~~~~~~l~~~~~~Q~-------------~ll~~i~~~n~~f~~~~~~~~~~~~re~~lq~L~~ay~~y~ 319 (353)
T cd09236 256 FDKRLAKYDKDLDAVSEEAQEQE-------------EILQQIEVANKAFLQSRKGDPATKERERALQSLDLAYFKYK 319 (353)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777666332 34445555666664321 112233344555555555444
No 194
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.20 E-value=2.3e+02 Score=32.60 Aligned_cols=71 Identities=21% Similarity=0.200 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLA 167 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~ 167 (346)
|.+..+..|-.|=+.-+..+||.|..+..+.. ++...+++....|.-+|-++-.+|..++.-.+.+-+
T Consensus 35 ~iq~~lrsyl~Rkk~~~~I~~e~d~~f~~d~~------------d~~~~~erv~~~~l~var~ll~q~r~ie~~~e~~~~ 102 (1096)
T KOG4427|consen 35 FIQRVLRSYLVRKKAQIEIQEEFDNLFSCDSV------------DLTKVLERVARPFLPVARSLLVQHRKIEAREERLEQ 102 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc------------chHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 56666777777777777777899998885542 677899999999999999999999999998888888
Q ss_pred HHH
Q 019120 168 DQR 170 (346)
Q Consensus 168 ~~R 170 (346)
.+|
T Consensus 103 iCr 105 (1096)
T KOG4427|consen 103 ICR 105 (1096)
T ss_pred HHH
Confidence 999
No 195
>PRK14161 heat shock protein GrpE; Provisional
Probab=44.07 E-value=1.4e+02 Score=27.68 Aligned_cols=82 Identities=15% Similarity=0.112 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA----AKAESIHQYVETMKT 163 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLA----Arva~LHe~Ve~lKe 163 (346)
-|.++..+||+.-.++++.++++.+.-.. ....+|-.++.++.....+.- ..+..|.+.|+....
T Consensus 41 ~~lR~~AefeN~rkR~~ke~~~~~~~a~~-----------~~~~~LLpv~DnlerAl~~~~~~~~~~~~~~~~Gv~mi~k 109 (178)
T PRK14161 41 KLIRTTAEIDNTRKRLEKARDEAKDYAIA-----------TFAKELLNVSDNLSRALAHKPANSDVEVTNIIAGVQMTKD 109 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhHHhHHHHHHhcCccccchhHHHHHHHHHHHHH
Confidence 34677888888888888877776655331 224455566666665554321 125678888999888
Q ss_pred HHHHHHHhcC----CC--CCccc
Q 019120 164 AYLADQRRRG----DG--SDPFL 180 (346)
Q Consensus 164 ~YL~~~Rr~G----D~--~DPFa 180 (346)
++++.-.++| +. -++|+
T Consensus 110 ~l~~vL~~~Gv~~I~~~~G~~FD 132 (178)
T PRK14161 110 ELDKVFHKHHIEEIKPEIGSMFD 132 (178)
T ss_pred HHHHHHHHCCCEEecCCCCCCCC
Confidence 8888776555 33 57783
No 196
>KOG2065 consensus Gamma-tubulin ring complex protein [Cytoskeleton]
Probab=44.04 E-value=1.5e+02 Score=32.33 Aligned_cols=66 Identities=21% Similarity=0.209 Sum_probs=44.9
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 83 KKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQ 156 (346)
Q Consensus 83 ~~Ps~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe 156 (346)
++|.-|+.-+.+-.|.-|+.||+-|-.||+.+..... .++..+-..|.+..-.|.-|---+.+||-
T Consensus 85 ~lhg~Ylra~a~Gi~~~L~~Yr~ail~lEq~~Lg~~~--------~sls~V~~~L~~ff~Lfp~~~~vi~eI~~ 150 (679)
T KOG2065|consen 85 SLHGYYLRALAKGIEMALEEYRAAILRLEQYCLGNER--------NSLSYVYNALYAFFPLFPFMRNVITEIHV 150 (679)
T ss_pred ccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCC--------chHHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 5667799999999999999999999999999773321 22444445555544455555444444443
No 197
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=44.02 E-value=1.9e+02 Score=28.13 Aligned_cols=68 Identities=9% Similarity=0.121 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Q 019120 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQY-VETMKTAYLADQRR 171 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~-Ve~lKe~YL~~~Rr 171 (346)
++++.++++.+++.+++-+..-. ..++.|-..-..-.+-..++..+.+.++++ |.-+|+.++.+++.
T Consensus 170 ~eK~~~k~~k~~~~~~~sk~~Y~------------~~l~~ln~~~~~y~~~m~~vfd~~Q~~Ee~Ri~flk~~l~~~~~~ 237 (258)
T cd07680 170 QKKLQDKVDKCKQDVQKTQEKYE------------KVLDDVGKTTPQYMENMEQVFEQCQQFEEKRLVFLKEVLLDIKRH 237 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888887776544 225566666555556666788888888886 99999999999986
Q ss_pred c
Q 019120 172 R 172 (346)
Q Consensus 172 ~ 172 (346)
+
T Consensus 238 l 238 (258)
T cd07680 238 L 238 (258)
T ss_pred c
Confidence 5
No 198
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=44.01 E-value=1.5e+02 Score=27.59 Aligned_cols=30 Identities=10% Similarity=0.160 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 137 ISNVHIFFVHVAAKAESIHQYVETMKTAYL 166 (346)
Q Consensus 137 L~~~hq~FvaLAArva~LHe~Ve~lKe~YL 166 (346)
++....-...+-+.++.|.+.+++++..|-
T Consensus 154 ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 154 KEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444555555556666666655553
No 199
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=44.00 E-value=1.8e+02 Score=26.91 Aligned_cols=63 Identities=17% Similarity=0.242 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 92 TVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKT 163 (346)
Q Consensus 92 lV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe 163 (346)
-+.+.++|+...+..|+++.+.+...-. -...+...++.....+-.....++.++++++++++
T Consensus 64 ~~~~~~~r~~~l~~~i~~~~~~i~~~r~---------~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 126 (302)
T PF10186_consen 64 EIEELRERLERLRERIERLRKRIEQKRE---------RLEELRESLEQRRSRLSASQDLVESRQEQLEELQN 126 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666665552221 13344444444444444333334444444444433
No 200
>PRK00736 hypothetical protein; Provisional
Probab=43.98 E-value=49 Score=25.97 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 019120 93 VARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~ 115 (346)
|.++|.+|..-...||+|-..|.
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~ 29 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLA 29 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555554
No 201
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=43.98 E-value=41 Score=33.80 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 019120 94 ARFEKYLGEFRQWIEELEQLI 114 (346)
Q Consensus 94 ~~FE~rL~~YRqqIEELE~~L 114 (346)
-+||+.+.+++.+|+||.+.-
T Consensus 6 ~~fe~~i~~l~~~~~~l~~~~ 26 (316)
T TIGR00513 6 LDFEKPIAELEAKIESLRARS 26 (316)
T ss_pred hhhhHHHHHHHHHHHHHHhhh
Confidence 379999999999999998863
No 202
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=43.95 E-value=1.5e+02 Score=23.04 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 019120 93 VARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~ 115 (346)
+.+-...+..++.+|+.|+..+.
T Consensus 7 l~~~~~~~~~~~~~l~~L~~~~~ 29 (123)
T PF02050_consen 7 LAEAQQELQEAEEQLEQLQQERQ 29 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555544
No 203
>PRK09343 prefoldin subunit beta; Provisional
Probab=43.85 E-value=1.9e+02 Score=24.76 Aligned_cols=42 Identities=5% Similarity=-0.005 Sum_probs=30.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 129 LLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 129 tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
-.+++..+..++..-.-.+-.++..|..+.+.+++.+-+.+.
T Consensus 65 v~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~ 106 (121)
T PRK09343 65 VKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQA 106 (121)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777777776667777777777777777666554
No 204
>PRK04406 hypothetical protein; Provisional
Probab=43.84 E-value=48 Score=26.64 Aligned_cols=23 Identities=30% Similarity=0.258 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 019120 93 VARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~ 115 (346)
+.++|.+|..-...||+|-..|.
T Consensus 13 i~~LE~~lAfQE~tIe~LN~~v~ 35 (75)
T PRK04406 13 INDLECQLAFQEQTIEELNDALS 35 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444445555544444
No 205
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=43.73 E-value=1.3e+02 Score=35.80 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHH
Q 019120 93 VARFEKYLGEFRQ 105 (346)
Q Consensus 93 V~~FE~rL~~YRq 105 (346)
+.++|++|++.|.
T Consensus 1203 f~~me~kl~~ir~ 1215 (1758)
T KOG0994|consen 1203 FLDMEEKLEEIRA 1215 (1758)
T ss_pred HHHHHHHHHHHHH
Confidence 6667777777666
No 206
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=43.52 E-value=58 Score=26.09 Aligned_cols=46 Identities=22% Similarity=0.332 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHH
Q 019120 107 IEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFV------------------HVAAKAESIHQYVETMKTA 164 (346)
Q Consensus 107 IEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~Fv------------------aLAArva~LHe~Ve~lKe~ 164 (346)
+-|||++|. +++..|.....++|+.+. +|-++|..|-.+|+.|.+.
T Consensus 1 MteLE~qLl------------~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~q 64 (70)
T PF04899_consen 1 MTELEKQLL------------SALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQ 64 (70)
T ss_pred CcHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
No 207
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=43.50 E-value=1e+02 Score=33.36 Aligned_cols=77 Identities=18% Similarity=0.155 Sum_probs=38.5
Q ss_pred hhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 76 DFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIH 155 (346)
Q Consensus 76 Dfys~~p~~Ps~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LH 155 (346)
|+--++=.+=.+|+++ -.+..+++.++.+.++++++.++.+-.+-+ =.+|.+.-.+-++-.+..|-++|++-
T Consensus 345 d~ie~ml~~~~~~~~~-~~~~~~~i~~~e~~vd~~~~~Ik~YL~~ls-------~~~Lse~es~r~~~iid~a~~lE~Ig 416 (533)
T COG1283 345 DSIEQMLERLYEYIEG-DAKKVKEIRKLEDAVDRLYEEIKLYLARLS-------KEGLSEEESRRWAEIIDAAINLEHIG 416 (533)
T ss_pred HHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cccCCHHHHHHHHHHHHHHHhHHHHH
Confidence 3333333333556665 566666666666677777666663332111 12333344444444455555555555
Q ss_pred HHHHH
Q 019120 156 QYVET 160 (346)
Q Consensus 156 e~Ve~ 160 (346)
|-+++
T Consensus 417 Diie~ 421 (533)
T COG1283 417 DIIER 421 (533)
T ss_pred HHHHH
Confidence 55555
No 208
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=43.22 E-value=2.4e+02 Score=30.76 Aligned_cols=72 Identities=19% Similarity=0.226 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
+.++++.+.+.+...+++|+.+...... ...+.+=..-|.++.....+-+.++..|+.+-+..+..-++..|
T Consensus 358 ~~q~~~e~~~~~~~~~~le~~~~l~~k~------~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r 429 (594)
T PF05667_consen 358 LKQLEEELEEKEAENEELEEELKLKKKT------VELLPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYR 429 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 5566677777777777777766633210 01122224455777888888888888888887777766555444
No 209
>PRK14148 heat shock protein GrpE; Provisional
Probab=43.15 E-value=1.4e+02 Score=28.20 Aligned_cols=81 Identities=12% Similarity=0.147 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA--AKAESIHQYVETMKTAY 165 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLA--Arva~LHe~Ve~lKe~Y 165 (346)
-|.++..+||+.-.+.++.++++.+.-.. ....+|-.++.++....-+.. ..+..|++.|+....++
T Consensus 62 ~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~-----------~~~~~LLpV~DnlerAl~~~~~~~~~~~l~~Gv~mi~k~l 130 (195)
T PRK14148 62 EALRAKAEMENIRKRAERDVSNARKFGIE-----------KFAKELLPVIDSIEQALKHEVKLEEAIAMKEGIELTAKML 130 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhHHhHHHHHHhccccchhHHHHHHHHHHHHHHH
Confidence 34556666666666666666665554321 224455566666665554322 23467888898888888
Q ss_pred HHHHHhcC-----CCCCcc
Q 019120 166 LADQRRRG-----DGSDPF 179 (346)
Q Consensus 166 L~~~Rr~G-----D~~DPF 179 (346)
++.-.++| ...+||
T Consensus 131 ~~vL~k~Gv~~I~~~G~~F 149 (195)
T PRK14148 131 VDILKKNGVEELDPKGEKF 149 (195)
T ss_pred HHHHHHCCCEEeCCCCCCC
Confidence 88766433 334677
No 210
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=43.12 E-value=1.8e+02 Score=23.66 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQL 113 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~ 113 (346)
..+...++++....+...++++++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (181)
T PF12729_consen 77 RQEIEKEIDEARAEIDEALEEYEKL 101 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555554
No 211
>KOG2574 consensus mRNA splicing factor PRP31 [RNA processing and modification]
Probab=43.11 E-value=39 Score=35.73 Aligned_cols=63 Identities=16% Similarity=0.182 Sum_probs=45.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCCccchhhHHHHHHHHHHhhcCCccccCCCC
Q 019120 129 LLQSLPQVISNVHIFFVHVAAKAESIHQYVE-TMKTAYLADQRRRGDGSDPFLEADRRETARQEAAAKRVHPTLHLPVN 206 (346)
Q Consensus 129 tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve-~lKe~YL~~~Rr~GD~~DPFaEadr~Eaa~q~~aa~Rv~Pt~~lPA~ 206 (346)
+|-+|...+-++-.+=+.|||||...|+..+ ++-..|++.-+ .-.+||+-++.|.++-.||.|
T Consensus 287 ~Ppdl~~ka~Rl~aAKvtLAARVDa~he~~~g~~g~~~k~eve---------------kK~eKl~EpPpvk~~KaLP~P 350 (492)
T KOG2574|consen 287 TPPDLRKKAARLVAAKVTLAARVDAGHESPNGELGHEFKAEVE---------------KKIEKLQEPPPVKQTKALPIP 350 (492)
T ss_pred cCccHHHHHHHHHHHHHHHHHHhhccccCCccHHHHHHHHHHH---------------HHHHhhcCCCCCCcCCCCCCC
Confidence 5567777788888888999999999999633 22233433221 135788888889999999988
No 212
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.07 E-value=87 Score=31.25 Aligned_cols=60 Identities=22% Similarity=0.388 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 85 PSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETM 161 (346)
Q Consensus 85 Ps~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~l 161 (346)
+..|++.++. +-++-++.+.|++.- ...+..|...|..+||.|+.||--|+.=-|.|+++
T Consensus 180 ~~~f~~~~i~----~~~~~~~~l~Eiq~R-------------h~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~I 239 (297)
T KOG0810|consen 180 SEVFTQKAIQ----DRGQAKQTLAEIQER-------------HDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRI 239 (297)
T ss_pred hHHHHHHHHH----HhhhhHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
No 213
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=42.92 E-value=3.1e+02 Score=27.61 Aligned_cols=73 Identities=15% Similarity=0.198 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 019120 98 KYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHV-AAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 98 ~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaL-AArva~LHe~Ve~lKe~YL~~~R 170 (346)
.++..+.+-|-.||+.|=........-........|..+|..++.-.--| -.+|..|+.+|+.+...+-++-.
T Consensus 209 a~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~ 282 (388)
T PF04912_consen 209 ARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAE 282 (388)
T ss_pred HHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555566788887753221111000012556777777776665555 45788888888888877755444
No 214
>PRK00295 hypothetical protein; Provisional
Probab=42.91 E-value=52 Score=25.82 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 91 QTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 91 qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
+-|.++|.++..-...||+|-..|.
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~ 29 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLV 29 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777766667777666665
No 215
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=42.91 E-value=4.2e+02 Score=27.74 Aligned_cols=30 Identities=10% Similarity=0.143 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 141 HIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 141 hq~FvaLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
.+-|+++=+||-+|-++|+++-..|-+++=
T Consensus 64 qeKFl~IR~KlleL~~~lQ~lS~df~~LqP 93 (379)
T PF11593_consen 64 QEKFLLIRSKLLELYNKLQELSSDFQKLQP 93 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 356888888888999999888888877764
No 216
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=42.87 E-value=1e+02 Score=32.44 Aligned_cols=37 Identities=24% Similarity=0.486 Sum_probs=27.9
Q ss_pred chhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019120 74 VFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLI 114 (346)
Q Consensus 74 v~Dfys~~p~~Ps~YF~qlV~~FE~rL~~YRqqIEELE~~L 114 (346)
+...|-.+...|-++|. +||+-+.++..+|+||++.-
T Consensus 60 ~~~~~~~~~~~~~~~~l----~fe~pi~ele~ki~el~~~~ 96 (431)
T PLN03230 60 ILNRFKPLKNKPKPVTL----PFEKPIVDLENRIDEVRELA 96 (431)
T ss_pred HHHhcCCCCCCCCCCcc----chhhHHHHHHHHHHHHHhhh
Confidence 33445566677777664 59999999999999998863
No 217
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=42.79 E-value=93 Score=29.94 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=23.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHh
Q 019120 131 QSLPQVISNVHIFFVHVAAKAESIHQYV----ETMKTAYLADQRR 171 (346)
Q Consensus 131 Q~L~~~L~~~hq~FvaLAArva~LHe~V----e~lKe~YL~~~Rr 171 (346)
.+|..-|+.+.+-.-.|=++|+.+.-+| +++||.|+++.++
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666554444 4455566665553
No 218
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=42.73 E-value=1.7e+02 Score=23.26 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 019120 93 VARFEKYLGEFRQWIEELEQLILLDP 118 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s~s 118 (346)
.-+|++-+..|.+-||-|-+.|+...
T Consensus 19 ~g~y~eAl~~Y~~aie~l~~~lk~e~ 44 (77)
T cd02683 19 EGRFQEALVCYQEGIDLLMQVLKGTK 44 (77)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhhCC
Confidence 45799999999999999999988554
No 219
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=42.68 E-value=1.2e+02 Score=29.72 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 019120 92 TVARFEKYLGEFRQWIEELEQLILL 116 (346)
Q Consensus 92 lV~~FE~rL~~YRqqIEELE~~L~s 116 (346)
.++-+|+++..+++.+++.|+.|..
T Consensus 171 a~~fl~~ql~~~~~~l~~ae~~l~~ 195 (362)
T TIGR01010 171 TIAFAENEVKEAEQRLNATKAELLK 195 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777777777777763
No 220
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=42.68 E-value=2.1e+02 Score=24.13 Aligned_cols=73 Identities=14% Similarity=0.096 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 87 AFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTA 164 (346)
Q Consensus 87 ~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~ 164 (346)
+-..+....|++.+...+..+++|...-+....... .....|...+..++.-.-.|...++..+..++..-+.
T Consensus 36 ~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~-----~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~ 108 (213)
T cd00176 36 EALLKKHEALEAELAAHEERVEALNELGEQLIEEGH-----PDAEEIQERLEELNQRWEELRELAEERRQRLEEALDL 108 (213)
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777788887777777777765442221011 2256788888888888888877777777766665443
No 221
>PLN02943 aminoacyl-tRNA ligase
Probab=42.45 E-value=1.2e+02 Score=34.56 Aligned_cols=65 Identities=12% Similarity=0.115 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMK 162 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lK 162 (346)
+..-+.++|++|+.++++|+.+|+.|...+ -. .-+|.++ ++.-.+-...+-.+++.|.+.+++++
T Consensus 887 ~~~E~~rL~K~l~klekei~~~~~kLsN~~--F~----~KAP~ev---v~~e~~kl~~~~~~l~~~~~~l~~l~ 951 (958)
T PLN02943 887 ISAEVERLSKRLSKMQTEYDALAARLSSPK--FV----EKAPEDV---VRGVREKAAEAEEKIKLTKNRLAFLK 951 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCch--hh----hcCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456688899999999999999999877322 00 0234333 33333333344455566666666555
No 222
>PRK02793 phi X174 lysis protein; Provisional
Probab=42.39 E-value=52 Score=26.07 Aligned_cols=25 Identities=28% Similarity=0.218 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 91 QTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 91 qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
+=+.++|.+|..-...||+|-..|.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~ 32 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVT 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555555555555555555544
No 223
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=42.38 E-value=1.1e+02 Score=25.16 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLA 167 (346)
Q Consensus 94 ~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~ 167 (346)
..+|.-+..+.+-|..||.-|.-.-+... ....+..-|+.++.=.-.||.+|.....+.++++..--+
T Consensus 4 ~~le~al~rL~~aid~LE~~v~~r~~~~~------~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~E 71 (89)
T PF13747_consen 4 YSLEAALTRLEAAIDRLEKAVDRRLERDR------KRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANRE 71 (89)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 46788888899999999988772222111 125677778888888888888888888877777665444
No 224
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=42.17 E-value=1.4e+02 Score=30.12 Aligned_cols=40 Identities=10% Similarity=0.050 Sum_probs=21.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 131 QSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 131 Q~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
..+...++.+|.-|-.+-.+|+.=-.+...+||+..+|-|
T Consensus 76 e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiR 115 (333)
T KOG1853|consen 76 ERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIR 115 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777766665555444433344555555444444
No 225
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=42.17 E-value=2.8e+02 Score=25.89 Aligned_cols=66 Identities=20% Similarity=0.296 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 86 SAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKT 163 (346)
Q Consensus 86 s~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe 163 (346)
.+=+.+-++..+..|+.-...|.+||++|.+.+. + --..|..-..+.+ .+-..+..|+++|+.++.
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k---~-----~~rql~~e~kK~~----~~~~~~~~l~~ei~~L~~ 185 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLELENK---S-----FRRQLASEKKKHK----EAQEEVKSLQEEIQRLNQ 185 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---H-----HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3456777888999999999999999999886653 1 0123333333333 334455666666666654
No 226
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=42.10 E-value=75 Score=33.86 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 019120 150 KAESIHQYVETMKTA 164 (346)
Q Consensus 150 rva~LHe~Ve~lKe~ 164 (346)
+|+.|.++++.||++
T Consensus 105 KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 105 RIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 227
>PRK12805 flagellin; Provisional
Probab=42.03 E-value=1.5e+02 Score=28.73 Aligned_cols=78 Identities=8% Similarity=-0.045 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Q 019120 94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAA------KAESIHQYVETMKTAYLA 167 (346)
Q Consensus 94 ~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAA------rva~LHe~Ve~lKe~YL~ 167 (346)
..=..++.+|.+.|.+....|.... ..++.|...|.++++..|+.+- ..+.|.++|+.++++-+.
T Consensus 53 ~~~~~~~~q~~~Ni~~~~s~l~~~e---------~~L~~i~~~l~r~rel~v~a~ngt~s~~dr~ai~~Ei~~l~~~i~~ 123 (287)
T PRK12805 53 NVKSTGLDAASKNSSMGIDLLQTAD---------SALSSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDH 123 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3344667778888888888887443 2478999999999999998753 677888889999998666
Q ss_pred HHH-hcCCCCCccc
Q 019120 168 DQR-RRGDGSDPFL 180 (346)
Q Consensus 168 ~~R-r~GD~~DPFa 180 (346)
+-. ..-+.+..|.
T Consensus 124 ~an~~~~nG~ylf~ 137 (287)
T PRK12805 124 VADTTNYNNIKLLD 137 (287)
T ss_pred HHHhCCCCCeeecC
Confidence 554 3445566664
No 228
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=42.00 E-value=1.1e+02 Score=28.09 Aligned_cols=63 Identities=19% Similarity=0.275 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 019120 99 YLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAK---AESIHQYVETMKTAYLA 167 (346)
Q Consensus 99 rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAAr---va~LHe~Ve~lKe~YL~ 167 (346)
-|......|++||+.|-=... ... ..+..+...|.+++.....++++ |..++.+++++. .||+
T Consensus 6 ~l~~Le~Ri~~LE~~v~G~~~-~~~----~~~~~v~~~L~~~~~~L~~~~s~re~i~~l~k~~~eL~-~YLD 71 (174)
T PF07426_consen 6 ALDILEKRIEELERRVYGENG-SKE----GQPEKVIDSLLSVQSALNSAASKRERIKELFKRIEELN-KYLD 71 (174)
T ss_pred HHHHHHHHHHHHHHHHcCCCc-ccc----CCchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-HHcC
Confidence 355566678899999851111 111 22556777777777777776553 444444455552 3554
No 229
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=41.91 E-value=1.9e+02 Score=34.68 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHHHhhchHHHHHHhh
Q 019120 2 ERQKAQLQERMAVVKDMLRNTEIAVRSFM 30 (346)
Q Consensus 2 er~k~~~~~l~~~V~~~lrntE~Avrs~~ 30 (346)
.+.++.++++...|.+..+++..|..+-+
T Consensus 1425 ~~~~ae~eq~~~~v~ea~~~aseA~~~Aq 1453 (1758)
T KOG0994|consen 1425 RSKLAEAEQTLSMVREAKLSASEAQQSAQ 1453 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34566777777778887777777765444
No 230
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=41.84 E-value=1.6e+02 Score=22.63 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 90 QQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 90 ~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
..+|.+.|..|.+....|++||.-++
T Consensus 24 ~~~i~~~e~~l~ea~~~l~qMe~E~~ 49 (79)
T PF05008_consen 24 KSLIREIERDLDEAEELLKQMELEVR 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888887776
No 231
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=41.79 E-value=2e+02 Score=25.62 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 019120 95 RFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 95 ~FE~rL~~YRqqIEELE~~L~ 115 (346)
+++++|..+++.|++++..+.
T Consensus 103 el~~~l~~~~~~~~~~~~~~~ 123 (204)
T PF04740_consen 103 ELKKKLNQLKEQIEDLQDEIN 123 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456667777777777776664
No 232
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=41.76 E-value=1.6e+02 Score=30.99 Aligned_cols=18 Identities=6% Similarity=0.032 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019120 135 QVISNVHIFFVHVAAKAE 152 (346)
Q Consensus 135 ~~L~~~hq~FvaLAArva 152 (346)
..|..+|+-+.+|..+++
T Consensus 251 ~~i~~a~~~i~~L~~~l~ 268 (582)
T PF09731_consen 251 SLIAHAKERIDALQKELA 268 (582)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444333
No 233
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.14 E-value=2.7e+02 Score=27.52 Aligned_cols=67 Identities=9% Similarity=0.095 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETM 161 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~l 161 (346)
=|.++...+-.-+....+++-+||+.+.....++ +++. |...|+..+..-..+...+..+--++..+
T Consensus 18 ~~~~l~~~i~~~i~~i~~~~~~l~r~~~~lgt~~------ds~~-lr~kl~~~~~~~~~~vkdt~~~lke~~~~ 84 (269)
T KOG0811|consen 18 DFQQLAQEIAANIQRINQQVLSLLRFLNSLGTKS------DSPE-LRDKLHQERLNANQLVKDTSALLKEIDTL 84 (269)
T ss_pred cHhHHHHHHHHHHHHHhHHHHHHHHHHHHcCCcc------ccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677888888889999999999999999766532 3454 77777777777666654444444333333
No 234
>PF14282 FlxA: FlxA-like protein
Probab=41.11 E-value=1.9e+02 Score=24.31 Aligned_cols=59 Identities=10% Similarity=0.122 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 97 EKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVET 160 (346)
Q Consensus 97 E~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~ 160 (346)
..++..++++|.+|+..|..... +.. .....-...+..+..-...|=++|+.|..+..+
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~-~~~----~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQ-DSD----LDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-ccC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555552222 000 234555666666666666666666666554433
No 235
>PRK12807 flagellin; Provisional
Probab=41.06 E-value=1.4e+02 Score=28.79 Aligned_cols=73 Identities=10% Similarity=0.081 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH-
Q 019120 98 KYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA------AKAESIHQYVETMKTAYLADQR- 170 (346)
Q Consensus 98 ~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLA------Arva~LHe~Ve~lKe~YL~~~R- 170 (346)
..+.+|.+.|.+....|+... ..++.+...|.++.+..|+.+ ...+.|.++|+.++++.+..-.
T Consensus 57 ~~~~q~~~N~~~~~s~l~~ad---------~~L~~i~~~l~r~rel~v~a~ngt~s~~dr~ai~~Ei~~l~~~i~~~a~~ 127 (287)
T PRK12807 57 SGLEKASQNTQDGMSLIRTAE---------SAMNSVSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQIDYIAKN 127 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566677777777777777443 247899999999999999874 5788899999999998777653
Q ss_pred hcCCCCCcc
Q 019120 171 RRGDGSDPF 179 (346)
Q Consensus 171 r~GD~~DPF 179 (346)
..-+.+..|
T Consensus 128 t~~nG~~lf 136 (287)
T PRK12807 128 TEFNDKNLL 136 (287)
T ss_pred CCcCCeeec
Confidence 333445555
No 236
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=40.85 E-value=1.8e+02 Score=31.58 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHhhchHHHHHHhhh
Q 019120 4 QKAQLQERMAVVKDMLRNTEIAVRSFMM 31 (346)
Q Consensus 4 ~k~~~~~l~~~V~~~lrntE~Avrs~~~ 31 (346)
..+-|++-...+++.|+..|.++..|+.
T Consensus 195 a~~~L~~ql~~l~~~l~~aE~~l~~fk~ 222 (754)
T TIGR01005 195 AADFLAPEIADLSKQSRDAEAEVAAYRA 222 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677788888899999988873
No 237
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=40.77 E-value=72 Score=32.17 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019120 93 VARFEKYLGEFRQWIEELEQL 113 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~ 113 (346)
.-+||+-+.++..+|+||++.
T Consensus 5 ~l~fe~~i~~l~~~i~~l~~~ 25 (319)
T PRK05724 5 YLDFEKPIAELEAKIEELRAV 25 (319)
T ss_pred hhhhhhHHHHHHHHHHHHHhh
Confidence 348999999999999999875
No 238
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=40.66 E-value=1.1e+02 Score=28.96 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 019120 95 RFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 95 ~FE~rL~~YRqqIEELE~~L~ 115 (346)
+.|.||+..+.+.+.|+.+|.
T Consensus 136 D~~arl~~l~~~~~rl~~ll~ 156 (262)
T PF14257_consen 136 DLEARLKNLEAEEERLLELLE 156 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666555
No 239
>PRK14149 heat shock protein GrpE; Provisional
Probab=40.57 E-value=1.4e+02 Score=28.11 Aligned_cols=82 Identities=15% Similarity=0.055 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA--AKAESIHQYVETMKTAY 165 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLA--Arva~LHe~Ve~lKe~Y 165 (346)
-|.++..+||++-.+.++.++++-..-.. ....+|-.++.++-...-+.- .....|.+.|+.....+
T Consensus 58 ~~lR~~AefEN~rKR~~kE~e~~~~~a~~-----------~~~~~LLpVlDnLerAl~~~~~~~~~~~l~~Gv~mi~k~l 126 (191)
T PRK14149 58 KYLRVHADFENVKKRLERDKSMALEYAYE-----------KIALDLLPVIDALLGALKSAAEVDKESALTKGLELTMEKL 126 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhHHhHHHHHHhccccccchHHHHHHHHHHHHHH
Confidence 45678888888888888887776665331 124455555655555543221 24567888899999998
Q ss_pred HHHHHhcC----CCCCccc
Q 019120 166 LADQRRRG----DGSDPFL 180 (346)
Q Consensus 166 L~~~Rr~G----D~~DPFa 180 (346)
++.-.++| +...+|+
T Consensus 127 ~~vL~k~GV~~I~~~G~FD 145 (191)
T PRK14149 127 HEVLARHGIEGIECLEEFD 145 (191)
T ss_pred HHHHHHCCCEEeCCCCCCC
Confidence 88776444 3345673
No 240
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=40.56 E-value=1.4e+02 Score=31.94 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 91 QTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 91 qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
+-++++|++|..+.++|++||..|.
T Consensus 563 ~~~~~~e~~i~~le~~~~~l~~~l~ 587 (638)
T PRK10636 563 KEIARLEKEMEKLNAQLAQAEEKLG 587 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456788888888888888888875
No 241
>PRK12802 flagellin; Provisional
Probab=40.53 E-value=1.1e+02 Score=29.31 Aligned_cols=84 Identities=12% Similarity=0.085 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Q 019120 92 TVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA------AKAESIHQYVETMKTAY 165 (346)
Q Consensus 92 lV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLA------Arva~LHe~Ve~lKe~Y 165 (346)
.+.++..++..|.+.+.-+...+...... ...+..+...|.++++..|+.+ ...+.|.++|+.++++.
T Consensus 50 ~~~~~~~~~~~~~q~~~n~~~~~s~l~~a------d~~l~~i~~~l~r~rel~v~a~ngt~s~~dr~ai~~ei~~l~~~i 123 (282)
T PRK12802 50 IATRQTSQIRGQTQAIKNANDGISIAQTA------EGALQESTNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEI 123 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHH
Confidence 45577777777777666665554432110 1347889999999999998774 37788889999999987
Q ss_pred HHHHH-hcCCCCCccch
Q 019120 166 LADQR-RRGDGSDPFLE 181 (346)
Q Consensus 166 L~~~R-r~GD~~DPFaE 181 (346)
+..-. ..-+.+..|.-
T Consensus 124 ~~~an~t~~nG~~lf~G 140 (282)
T PRK12802 124 TRIATSTTLNGKNLLDG 140 (282)
T ss_pred HHHHHhCCcCCeeeeCC
Confidence 77665 34455666643
No 242
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=40.49 E-value=81 Score=28.70 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhhchHHHH
Q 019120 5 KAQLQERMAVVKDMLRNTEIAV 26 (346)
Q Consensus 5 k~~~~~l~~~V~~~lrntE~Av 26 (346)
++.|.+||--|.-.|-+-|...
T Consensus 21 ~e~v~~LmP~VV~vLE~Le~~~ 42 (158)
T PF09744_consen 21 EEAVKGLMPKVVRVLELLESLA 42 (158)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4678888855555555555544
No 243
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=40.32 E-value=2.9e+02 Score=28.24 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhhchHHHHHHhh
Q 019120 7 QLQERMAVVKDMLRNTEIAVRSFM 30 (346)
Q Consensus 7 ~~~~l~~~V~~~lrntE~Avrs~~ 30 (346)
-|++-++.+++-|+..|.+++.|+
T Consensus 165 fl~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 165 FIDEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555677778888888888886
No 244
>PRK14692 lagellar hook-associated protein FlgL; Provisional
Probab=40.27 E-value=1.1e+02 Score=34.34 Aligned_cols=69 Identities=13% Similarity=0.168 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Q 019120 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA------AKAESIHQYVETMKTAYL 166 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLA------Arva~LHe~Ve~lKe~YL 166 (346)
++.-..++.+|++.|+.....|.... ..++.|..+|+++.+..|+.+ ...+.|.++|+.++++.+
T Consensus 52 L~s~i~~l~Qy~~Ni~~A~s~L~~tE---------taL~sI~~iLqr~ReLaVqAaNGT~S~~dR~AIA~El~~L~eqLl 122 (749)
T PRK14692 52 LEYEIKTLEQVKESTSRAQEMTQNSM---------KALQDMVKLLEDFKVKVTQAASDSNSQTSREAIAKELERIKESIV 122 (749)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44456667777777777777776332 347889999999999888765 456788999999999877
Q ss_pred HHHH
Q 019120 167 ADQR 170 (346)
Q Consensus 167 ~~~R 170 (346)
.+-.
T Consensus 123 ~iAN 126 (749)
T PRK14692 123 QLAN 126 (749)
T ss_pred HHhc
Confidence 7553
No 245
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=40.26 E-value=2.2e+02 Score=23.84 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=30.0
Q ss_pred chhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019120 74 VFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILL 116 (346)
Q Consensus 74 v~Dfys~~p~~Ps~YF~qlV~~FE~rL~~YRqqIEELE~~L~s 116 (346)
+.+|.++- |.+=|..++.+.-..+..|-.+|.+||..|..
T Consensus 26 f~~yl~~~---~~~~y~~~~~~iT~~f~~~S~ei~~ie~~L~~ 65 (97)
T PF14966_consen 26 FKKYLRSG---PEEAYRQLCHEITQEFSAISKEILAIEAELRD 65 (97)
T ss_pred HHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34555543 33677888888888888888899999988873
No 246
>PF08913 VBS: Vinculin Binding Site; InterPro: IPR015009 Vinculin binding sites are predominantly found in talin and talin-like molecules, enabling binding of vinculin to talin, stabilising integrin-mediated cell-matrix junctions. Talin, in turn, links integrins to the actin cytoskeleton. The consensus sequence for Vinculin binding sites is LxxAAxxVAxxVxxLIxxA, with a secondary structure prediction of four amphipathic helices. The hydrophobic residues that define the VBS are themselves 'masked' and are buried in the core of a series of helical bundles that make up the talin rod []. ; PDB: 2L10_A 2KVP_A 2B0H_A 1RKC_B 1XWJ_B.
Probab=40.12 E-value=2.6e+02 Score=24.57 Aligned_cols=81 Identities=14% Similarity=0.203 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHH
Q 019120 94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKA-------------ESIHQYVET 160 (346)
Q Consensus 94 ~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArv-------------a~LHe~Ve~ 160 (346)
.+|..+|..|.+.|.++-+-|...+. ..|++|...-.++-+-|-.||... .+|...|++
T Consensus 3 vdyQt~mv~~ak~ia~~a~emv~ks~--------~~p~eL~~la~~lt~~y~~La~~~~~aaat~~~~ev~~~i~~~vq~ 74 (125)
T PF08913_consen 3 VDYQTRMVEAAKEIARTAQEMVTKSR--------TNPEELGTLANDLTHDYSQLAQDAKGAAATTPSAEVQNRIKSAVQD 74 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC--------C-CCCHHHHHHHHHHHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc--------CChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 57889999999999999888875553 236788777777777777776543 245555666
Q ss_pred HHHHHHHHHH----hcCCCCCccchh
Q 019120 161 MKTAYLADQR----RRGDGSDPFLEA 182 (346)
Q Consensus 161 lKe~YL~~~R----r~GD~~DPFaEa 182 (346)
+=+.-+++-. ...|+.|++...
T Consensus 75 LG~sc~~Lv~aag~~~~~P~d~~~k~ 100 (125)
T PF08913_consen 75 LGMSCIELVQAAGAVQSNPSDPYAKR 100 (125)
T ss_dssp HHHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred HHHHHHHHHHHhCcCCCCCCchhHHH
Confidence 6666666554 356777877433
No 247
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=40.12 E-value=2e+02 Score=27.71 Aligned_cols=76 Identities=17% Similarity=0.125 Sum_probs=48.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHH
Q 019120 86 SAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFF-VHVAAKAES-IHQYVETMKT 163 (346)
Q Consensus 86 s~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~F-vaLAArva~-LHe~Ve~lKe 163 (346)
..=|..++++.|.--.+-++..|+|+..+...-. ...++. ..+++.|+-| -.|-..... .-+.|+++|.
T Consensus 64 ~~sW~~vl~qte~iA~~~~~~aE~l~~~i~~~l~--------~l~~~~-~~~~k~~~~~~~kl~~e~~~~~~~~l~K~K~ 134 (234)
T cd07686 64 SKSWLHMVQQTEQLSKIMKTHAEELNSGPLHRLT--------MMIKDK-QQVKKSYIGVHQQIEAEMYKVTKTELEKLKC 134 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4457788888888888888888888865541100 011233 3333333333 455555555 4466999999
Q ss_pred HHHHHHH
Q 019120 164 AYLADQR 170 (346)
Q Consensus 164 ~YL~~~R 170 (346)
.|-..++
T Consensus 135 ~Y~~~~~ 141 (234)
T cd07686 135 SYRQLTK 141 (234)
T ss_pred hHHHHHH
Confidence 9999887
No 248
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=40.10 E-value=3.6e+02 Score=26.77 Aligned_cols=20 Identities=25% Similarity=0.484 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 019120 96 FEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 96 FE~rL~~YRqqIEELE~~L~ 115 (346)
+|+=+..|..+|||=|+|+.
T Consensus 76 LeeliNkWs~el~~Qe~vF~ 95 (254)
T KOG2196|consen 76 LEELINKWSLELEEQERVFL 95 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666676665
No 249
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=40.01 E-value=2.1e+02 Score=26.64 Aligned_cols=23 Identities=4% Similarity=0.143 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 019120 93 VARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~ 115 (346)
-.++|.++..|...|++.|....
T Consensus 54 ~k~~e~~~~~~~~~~~~~~~~A~ 76 (219)
T TIGR02977 54 KKELERRVSRLEAQVADWQEKAE 76 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788889999999999888766
No 250
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=39.92 E-value=2.9e+02 Score=25.96 Aligned_cols=27 Identities=30% Similarity=0.302 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
...-+.+-|.|+..+...|.+||.-|.
T Consensus 125 ~E~~Le~aEeR~e~~E~ki~eLE~el~ 151 (237)
T PF00261_consen 125 LEQELERAEERAEAAESKIKELEEELK 151 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhchhHHHHHHHHH
Confidence 344467777777777777777777766
No 251
>PRK14160 heat shock protein GrpE; Provisional
Probab=39.78 E-value=1.4e+02 Score=28.43 Aligned_cols=79 Identities=18% Similarity=0.218 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD 168 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~ 168 (346)
|.++..+||++-.+.++.++++...-.. ....+|-.++.++..+.-+ ...+..|++.|+....++++.
T Consensus 84 ~lR~~AefeN~RKR~~kE~e~~~~~a~e-----------~~~~~LLpVlDnLerAl~~-~~~~~~l~~Gv~mi~kql~~v 151 (211)
T PRK14160 84 LLRTVAEYDNYRKRTAKEKEGIYSDACE-----------DVLKELLPVLDNLERAAAV-EGSVEDLKKGIEMTVKQFKTS 151 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhHHhHHHHHHhc-ccchhHHHHHHHHHHHHHHHH
Confidence 3455666666666666666665444220 1244555566666555432 345677888999988888887
Q ss_pred HHhcC----CCCCcc
Q 019120 169 QRRRG----DGSDPF 179 (346)
Q Consensus 169 ~Rr~G----D~~DPF 179 (346)
-.++| +...+|
T Consensus 152 L~k~GVe~I~~~G~F 166 (211)
T PRK14160 152 LEKLGVEEISTEGEF 166 (211)
T ss_pred HHHCCCEEeCCCCCC
Confidence 76544 334577
No 252
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=39.68 E-value=1.6e+02 Score=30.59 Aligned_cols=77 Identities=17% Similarity=0.200 Sum_probs=52.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHH----HHHHHHHHH-HHH
Q 019120 86 SAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA----AKAESIHQY-VET 160 (346)
Q Consensus 86 s~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLA----Arva~LHe~-Ve~ 160 (346)
.+.++++=+...+.....+++|++++.-|...-. .-...|..+|++..+..+.+| ..|+.|-++ +.+
T Consensus 67 ~~~l~~~w~~v~~~~~~r~~~I~~l~~~L~~~E~--------~R~~~l~~~l~~~~~~L~~ia~~~~~dv~rli~~ea~~ 138 (473)
T PF14643_consen 67 IQDLLELWDEVAEHSQKRKQWIKELDEDLEELEK--------ERADKLKKVLRKYVEILEKIAHLLPPDVERLIEKEAME 138 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Confidence 5678888888888888889999999888773332 113456777777777776655 455554333 666
Q ss_pred HHHHHHHHHH
Q 019120 161 MKTAYLADQR 170 (346)
Q Consensus 161 lKe~YL~~~R 170 (346)
++..+|..||
T Consensus 139 iN~~ll~Nrr 148 (473)
T PF14643_consen 139 INQALLGNRR 148 (473)
T ss_pred HHHHHHHhHH
Confidence 6677777666
No 253
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=39.67 E-value=98 Score=25.36 Aligned_cols=45 Identities=20% Similarity=0.181 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHH
Q 019120 95 RFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIF 143 (346)
Q Consensus 95 ~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~ 143 (346)
.++.++...+++++++|+.+....... . ...-+.+...++.+|+|
T Consensus 4 ~l~~~~~~L~~~~~~l~~~i~~~~~~l-~---~~~~~~v~~hI~lLheY 48 (83)
T PF07061_consen 4 SLEAEIQELKEQIEQLEKEISELEAEL-I---EDPEKIVKRHIKLLHEY 48 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-c---cCHHHHHHHHHHHHHHH
Confidence 444555555555555555444211100 0 02235566777777766
No 254
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=39.62 E-value=1.7e+02 Score=29.78 Aligned_cols=27 Identities=7% Similarity=0.078 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 019120 91 QTVARFEKYLGEFRQWIEELEQLILLD 117 (346)
Q Consensus 91 qlV~~FE~rL~~YRqqIEELE~~L~s~ 117 (346)
...+-+|+++..+++.+++.|..|...
T Consensus 161 ~~~~fl~~ql~~~~~~L~~ae~~l~~f 187 (498)
T TIGR03007 161 SAQRFIDEQIKTYEKKLEAAENRLKAF 187 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667888888999999998888733
No 255
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=39.59 E-value=3e+02 Score=26.20 Aligned_cols=73 Identities=15% Similarity=0.155 Sum_probs=39.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 86 SAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAY 165 (346)
Q Consensus 86 s~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~Y 165 (346)
..+-.++-..|+.++...+++++.-...+...-. -...+...|+.+..-+-.|-++...|...|.++...|
T Consensus 183 ~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~---------E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~ 253 (312)
T PF00038_consen 183 QKNREELEEWYQSKLEELRQQSEKSSEELESAKE---------ELKELRRQIQSLQAELESLRAKNASLERQLRELEQRL 253 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhcccccccccccccccccccchhHh---------HHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHH
Confidence 4577788888888888888877765555442210 1223344444444444444444444444444444444
Q ss_pred HH
Q 019120 166 LA 167 (346)
Q Consensus 166 L~ 167 (346)
-.
T Consensus 254 ~~ 255 (312)
T PF00038_consen 254 DE 255 (312)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 256
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=39.53 E-value=97 Score=30.36 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
+..++.-+.++|..+++.|++++....
T Consensus 4 l~~l~~pl~e~l~~~~~~l~~~~~~~~ 30 (304)
T PF02646_consen 4 LEQLLKPLKEQLEKFEKRLEESFEQRS 30 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888899999999998888755
No 257
>PRK10698 phage shock protein PspA; Provisional
Probab=39.35 E-value=2.1e+02 Score=27.00 Aligned_cols=72 Identities=7% Similarity=0.108 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh--cCCCCCCC-CC-------CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 93 VARFEKYLGEFRQWIEELEQLIL--LDPDRNSS-SH-------GSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMK 162 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~--s~s~~~~S-~~-------gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lK 162 (346)
-.++|.++..+...|++.|..-. +..+.+.- -. -......|..-+..+.+....|-.++..|..+|+++|
T Consensus 54 ~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak 133 (222)
T PRK10698 54 KKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETR 133 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999988655 22221000 00 0001122333344555555555666666666666666
Q ss_pred HH
Q 019120 163 TA 164 (346)
Q Consensus 163 e~ 164 (346)
..
T Consensus 134 ~k 135 (222)
T PRK10698 134 AR 135 (222)
T ss_pred HH
Confidence 54
No 258
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=39.34 E-value=36 Score=25.56 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLI 114 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L 114 (346)
-+++-.+..|+++...-++|+|||..=
T Consensus 9 lLqe~~d~IEqkiedid~qIaeLe~KR 35 (46)
T PF08946_consen 9 LLQEHYDNIEQKIEDIDEQIAELEAKR 35 (46)
T ss_dssp ------THHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHH
Confidence 456667889999999999999999763
No 259
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=39.32 E-value=2.9e+02 Score=26.85 Aligned_cols=20 Identities=10% Similarity=0.101 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019120 148 AAKAESIHQYVETMKTAYLA 167 (346)
Q Consensus 148 AArva~LHe~Ve~lKe~YL~ 167 (346)
-.++..+..+++.++...-+
T Consensus 209 ~~~l~~~~~~l~~~~~~l~~ 228 (423)
T TIGR01843 209 QGELGRLEAELEVLKRQIDE 228 (423)
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333
No 260
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=39.19 E-value=30 Score=29.82 Aligned_cols=39 Identities=5% Similarity=0.216 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 019120 141 HIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPF 179 (346)
Q Consensus 141 hq~FvaLAArva~LHe~Ve~lKe~YL~~~Rr~GD~~DPF 179 (346)
..-+..+=.+|...++.+..+++.|.+.|+...+..++|
T Consensus 54 ~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~ 92 (150)
T PF07200_consen 54 EPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNY 92 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 344555566677777777777777777776544444444
No 261
>KOG3719 consensus Carnitine O-acyltransferase CPT2/YAT1 [Lipid transport and metabolism]
Probab=39.10 E-value=23 Score=38.31 Aligned_cols=49 Identities=29% Similarity=0.371 Sum_probs=40.8
Q ss_pred CcccchhhccCCCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhcCC
Q 019120 70 SVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEF--RQWIEELEQLILLDP 118 (346)
Q Consensus 70 ~~~pv~Dfys~~p~~Ps~YF~qlV~~FE~rL~~Y--RqqIEELE~~L~s~s 118 (346)
+..|.+-|...+|++|-|=+.+++++|-+.++-. -.|++.+|+.++.-.
T Consensus 12 s~~pt~~~q~sLpRLPIPkL~DTl~Ryl~s~kpLl~p~q~~kt~~ti~sfE 62 (638)
T KOG3719|consen 12 SSGPTFHFQESLPRLPIPKLEDTLNRYLESLKPLLDPEQFRKTEQTIRSFE 62 (638)
T ss_pred cCCCceecccccccCCCCchhhHHHHHHHhccccCCHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999998887755 347888888887544
No 262
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=39.05 E-value=2.6e+02 Score=24.35 Aligned_cols=72 Identities=22% Similarity=0.142 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 90 QQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQ 169 (346)
Q Consensus 90 ~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~ 169 (346)
+.-+..++.-|+.++--++||-+.=-... .+.+.|..--..+++-.--|=++|..+-..|+..|.+|+.+.
T Consensus 15 ~n~La~Le~slE~~K~S~~eL~kqkd~L~---------~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~ 85 (107)
T PF09304_consen 15 QNRLASLERSLEDEKTSQGELAKQKDQLR---------NALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELE 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566788888888888888733211000 123333333344444444677788888888999999998876
Q ss_pred H
Q 019120 170 R 170 (346)
Q Consensus 170 R 170 (346)
.
T Consensus 86 ~ 86 (107)
T PF09304_consen 86 S 86 (107)
T ss_dssp H
T ss_pred H
Confidence 5
No 263
>PF11568 Med29: Mediator complex subunit 29; InterPro: IPR021018 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med29, along with Med11 and Med28, in mammals, is part of the core head-region of the complex. Med29 is the apparent orthologue of the Drosophila melanogaster Intersex protein, which interacts directly with, and functions as a transcriptional coactivator for, the DNA-binding transcription factor Doublesex, so it is likely that mammalian Med29 serves as a target for one or more DNA-binding transcriptional activators []. ; GO: 0016592 mediator complex
Probab=39.05 E-value=1.7e+02 Score=26.77 Aligned_cols=66 Identities=20% Similarity=0.321 Sum_probs=43.9
Q ss_pred hhhHHHHHHHHHHHHHHhhchHHHHHHhhhccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhccCC
Q 019120 2 ERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLHPNAGSASSATAPSQASGATAAPSSTGQPASSSVVPVFDFYRGL 81 (346)
Q Consensus 2 er~k~~~~~l~~~V~~~lrntE~Avrs~~~lr~rf~~~~~~~~~~~~~~~~~~g~~~~~~~~~qp~~~~~~pv~Dfys~~ 81 (346)
.|-|..|..|++-+..|||.+-..++ | + ..++++. .|.. .| ..
T Consensus 8 ~kvK~Lv~~LreSl~~~~k~AA~~l~--q---------n-~~~D~g~-----~~~~-----------------~d---~~ 50 (148)
T PF11568_consen 8 SKVKSLVGPLRESLSNLMKTAAQNLQ--Q---------N-SLVDNGT-----RGKS-----------------SD---EP 50 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--H---------h-ccccccc-----cccc-----------------cc---Cc
Confidence 46788899999999999998766553 2 1 2233331 0111 00 01
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 82 PKKPSAFLQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 82 p~~Ps~YF~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
+.+|++-|++|-..-+|||++|+
T Consensus 51 -----------~~RFdK~lEeFysiCDQIEl~L~ 73 (148)
T PF11568_consen 51 -----------VPRFDKNLEEFYSICDQIELHLK 73 (148)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999887
No 264
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=38.91 E-value=2.7e+02 Score=26.65 Aligned_cols=31 Identities=13% Similarity=0.295 Sum_probs=21.8
Q ss_pred CCccHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 019120 83 KKPSAFLQQT---VARFEKYLGEFRQWIEELEQL 113 (346)
Q Consensus 83 ~~Ps~YF~ql---V~~FE~rL~~YRqqIEELE~~ 113 (346)
.=|.+||.+. |+.+|++|......++-|-++
T Consensus 18 ~E~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~ 51 (234)
T cd07664 18 NESDAWFEEKQQQFENLDQQLRKLHASVESLVCH 51 (234)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356788654 677888888888887766553
No 265
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=38.85 E-value=2.4e+02 Score=26.83 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHhc
Q 019120 144 FVHVAAKAESIHQY-VETMKTAYLADQRRR 172 (346)
Q Consensus 144 FvaLAArva~LHe~-Ve~lKe~YL~~~Rr~ 172 (346)
...+.-+++.|.++ |.-+|+....+.+.+
T Consensus 209 m~~~~~~~Q~lEe~Ri~~lk~~l~~y~~~l 238 (258)
T cd07655 209 MEQVFDKCQEFEEKRLDFFKEILLSYHRHL 238 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455566666655 777777777777644
No 266
>PHA02562 46 endonuclease subunit; Provisional
Probab=38.35 E-value=1.9e+02 Score=29.72 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 137 ISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 137 L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
+..+.+-+..+-.+...|+.+++.+++...+++.
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~ 248 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVM 248 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444455555666666677777777777766654
No 267
>PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin. The SPB functions as the microtubule-organising centre in yeast, with the microtubule cytoskeleton playing an essential role in chromosome segregation, cellular organisation and vesicle trafficking in eukaryotic cells. In most cells, the centrosome is the primary microtubule-organising centre that nucleates and organises microtubules. Gamma-tubulin localises to centrosomes and is required for microtubule nucleation. In Saccharomyces cerevisiae, gamma-tubulin forms a stable complex with Spc97 and Spc98 [].; GO: 0000226 microtubule cytoskeleton organization, 0000922 spindle pole, 0005815 microtubule organizing center; PDB: 3RIP_A.
Probab=38.27 E-value=1.2e+02 Score=29.91 Aligned_cols=34 Identities=29% Similarity=0.480 Sum_probs=28.6
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 019120 84 KPSAFLQQTVARFEKYLGEFRQWIEELEQLILLD 117 (346)
Q Consensus 84 ~Ps~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~ 117 (346)
...++.+-+..-+++.|..|+..|.+||+.+...
T Consensus 68 ~~~~~~~a~~~~l~~~L~~y~~~l~~le~~~~~~ 101 (542)
T PF04130_consen 68 ERGPTLQAFASALSSILQEYREFLSELEESILSN 101 (542)
T ss_dssp S-SHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3467889999999999999999999999987743
No 268
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=38.25 E-value=2.2e+02 Score=23.30 Aligned_cols=41 Identities=15% Similarity=0.162 Sum_probs=27.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 130 LQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 130 pQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
-.++..++..+.+---.|-.++..|.+.+.++++++-.+..
T Consensus 82 e~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~ 122 (129)
T cd00890 82 EKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQE 122 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777776666666777777777777666655543
No 269
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=38.19 E-value=1.5e+02 Score=36.57 Aligned_cols=65 Identities=25% Similarity=0.309 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD 168 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~ 168 (346)
+.++..+++.+|.+|+.+|++++..+.. ..++|.. +..-.-.|=.+|..|..+|+.++.+|+.+
T Consensus 828 ~r~l~~~~~~~l~~~~~~i~~~~~~~~~------------~~~~l~~----~~~~~~~le~k~~eL~k~l~~~~~~~~~l 891 (1822)
T KOG4674|consen 828 LRELTNSLEKQLENAQNLVDELESELKS------------LLTSLDS----VSTNIAKLEIKLSELEKRLKSAKTQLLNL 891 (1822)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHH------------HHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Confidence 4556777777777777777777776551 1223332 33333344557778888888888888776
Q ss_pred H
Q 019120 169 Q 169 (346)
Q Consensus 169 ~ 169 (346)
.
T Consensus 892 ~ 892 (1822)
T KOG4674|consen 892 D 892 (1822)
T ss_pred c
Confidence 5
No 270
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=38.18 E-value=67 Score=27.40 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 019120 94 ARFEKYLGEFRQWIEELEQLI 114 (346)
Q Consensus 94 ~~FE~rL~~YRqqIEELE~~L 114 (346)
+++++++..-+++|++||.+|
T Consensus 79 ~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 79 EKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 333334444888888888876
No 271
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=38.08 E-value=2e+02 Score=31.59 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 019120 147 VAAKAESIHQYVETMKTAYLADQRR 171 (346)
Q Consensus 147 LAArva~LHe~Ve~lKe~YL~~~Rr 171 (346)
++.++..+++++.+.|+.|-...+.
T Consensus 259 ~~~~l~~~~~~l~~~~~~~~~~~~~ 283 (759)
T PF01496_consen 259 YAEELEAWYEYLRKEKEIYEALNKF 283 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3446778888888888887666653
No 272
>PRK14146 heat shock protein GrpE; Provisional
Probab=37.96 E-value=1.8e+02 Score=27.68 Aligned_cols=82 Identities=12% Similarity=0.159 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 019120 87 AFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHV--AAKAESIHQYVETMKTA 164 (346)
Q Consensus 87 ~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaL--AArva~LHe~Ve~lKe~ 164 (346)
..|.++..+||++-.+..+.++++.+.-.. ..+.+|-.++.++-...-+. ...+..|++.|+....+
T Consensus 75 d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e-----------~~~~~lLpv~DnlerAl~~~~~~~~~~~l~~Gv~mi~k~ 143 (215)
T PRK14146 75 DSWARERAEFQNFKRRSAQEFVSIRKEAVK-----------SLVSGFLNPIDNLERVGATQNQSEELKPFVEGVKMILKE 143 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhHHhHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 455677888888887777777776655331 22445555666665553221 13467788899999898
Q ss_pred HHHHHHhcC-----CCCCcc
Q 019120 165 YLADQRRRG-----DGSDPF 179 (346)
Q Consensus 165 YL~~~Rr~G-----D~~DPF 179 (346)
+++.-.++| ...+||
T Consensus 144 l~~~L~k~Gv~~i~~~G~~F 163 (215)
T PRK14146 144 FYSVLEKSNVIRFDPKGEPF 163 (215)
T ss_pred HHHHHHHCcCeeeCCCCCCC
Confidence 888776433 345677
No 273
>PRK09546 zntB zinc transporter; Reviewed
Probab=37.93 E-value=2.7e+02 Score=27.03 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLILL 116 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~s 116 (346)
.+..++++|...|.....+||+||..+..
T Consensus 147 lld~ivd~~~~~l~~i~~~ld~lE~~l~~ 175 (324)
T PRK09546 147 VCDALTDHASEFIEELHDKIIDLEDNLLD 175 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566678999999999999999998863
No 274
>COG3685 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.90 E-value=63 Score=30.08 Aligned_cols=30 Identities=33% Similarity=0.230 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 019120 90 QQTVARFEKYLGEFRQWIEELEQLILLDPD 119 (346)
Q Consensus 90 ~qlV~~FE~rL~~YRqqIEELE~~L~s~s~ 119 (346)
-+|-..||+-+.+-+.|||.||+++...+.
T Consensus 38 ~~Lka~~E~Hl~ET~~qi~rLe~Vfe~~g~ 67 (167)
T COG3685 38 PELKAAIEKHLEETKGQIERLEQVFERLGK 67 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 467899999999999999999999997554
No 275
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=37.62 E-value=69 Score=39.05 Aligned_cols=73 Identities=15% Similarity=0.181 Sum_probs=52.4
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHH
Q 019120 80 GLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESI 154 (346)
Q Consensus 80 ~~p~~Ps~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~L 154 (346)
..+.-|.+|+|.+++-+|.+|..+.+.|+|=|+-|.-.-.| .+-+ .-.++.....+...|+-.+.+=..+..+
T Consensus 2091 s~~v~~~pytw~t~e~Le~tw~~L~~iI~eR~~el~~E~~R-q~~N-~klc~efa~~a~tfh~wi~etr~el~~~ 2163 (2399)
T KOG0040|consen 2091 SFNVGSNPYTWFTMEALEETWRNLQQIISERERELDKEISR-QEEN-DKLCEEFACTANTFHQWIVETRKELEDG 2163 (2399)
T ss_pred hcCCCCCCceeehHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcch-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44567899999999999999999999999999988733221 1111 0256777777888888777664444444
No 276
>PF03792 PBC: PBC domain; InterPro: IPR005542 Pbx proteins are members of the TALE (three-amino-acid loop extension) family of atypical homeodomain proteins, whose members are characterised by a three-residue insertion in the first helix of the homeodomain involved in their interaction with Hox proteins. Examination of Pbx1 has shown that, in addition to the homeodomain, a short 16-residue C-terminal tail is essential for maximal cooperative interactions with Hox partners as well as for maximal monomeric binding of Pbx1 to DNA. The PBX domain is a bipartite acidic domain [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=37.55 E-value=1.8e+02 Score=27.59 Aligned_cols=63 Identities=13% Similarity=0.255 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 019120 99 YLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAE-SIHQYVETMKTAYL 166 (346)
Q Consensus 99 rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva-~LHe~Ve~lKe~YL 166 (346)
+-+.|+...+.+.++|+.++. -.+ .++++|...|..+|.-|..+--+|. ..=|.|=.||..||
T Consensus 127 ye~ac~eF~~hV~~lLreQs~--~RP---Is~keiE~m~~~i~~Kf~~iq~qLKQstCEaVm~LRsRfl 190 (191)
T PF03792_consen 127 YEQACNEFTEHVMNLLREQSE--FRP---ISPKEIERMVNIIHRKFSKIQMQLKQSTCEAVMILRSRFL 190 (191)
T ss_pred HHHHhhhhHHHHHHHHHHhcc--cCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444466667777775553 234 3589999999999999998844443 23344666666665
No 277
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=37.52 E-value=1.8e+02 Score=33.46 Aligned_cols=28 Identities=36% Similarity=0.484 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHhhc
Q 019120 89 LQQTVARFEKYLGEFR----QWIEELEQLILL 116 (346)
Q Consensus 89 F~qlV~~FE~rL~~YR----qqIEELE~~L~s 116 (346)
|..+|..||+.+.... |||||+|++...
T Consensus 898 ~d~~~~~~e~~~~~l~sk~~q~~~e~er~rk~ 929 (1259)
T KOG0163|consen 898 YDVAVKNYEKLVKRLDSKEQQQIEELERLRKI 929 (1259)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3455777776665554 599999998773
No 278
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=37.41 E-value=67 Score=30.57 Aligned_cols=62 Identities=19% Similarity=0.208 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCC
Q 019120 99 YLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR--RRGDG 175 (346)
Q Consensus 99 rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~R--r~GD~ 175 (346)
.|+.|++.||..-+ ++ +......=..=-+.|++-...+++|.++..+-++.||-|++ +.||.
T Consensus 60 ~le~Y~kCielAa~-Iq--------------~i~~~e~k~~R~~a~~~s~~~l~~L~~~tk~S~dP~llYy~Wsr~~d~ 123 (203)
T PF11207_consen 60 ALEKYSKCIELAAQ-IQ--------------HIKQKERKTDRFRALLHSYQELERLQEETKNSQDPYLLYYHWSRFGDQ 123 (203)
T ss_pred HHHHHHHHHHHHhc-Ce--------------eechHhHHHHHHHHHHHHHHHHHHHHHHHccCCCccHHHHHhhccCcH
Confidence 46677777765322 11 12223333333467888889999999999999999999998 77864
No 279
>PF15393 DUF4615: Domain of unknown function (DUF4615)
Probab=37.38 E-value=71 Score=28.29 Aligned_cols=20 Identities=30% Similarity=0.320 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 019120 94 ARFEKYLGEFRQWIEELEQLILL 116 (346)
Q Consensus 94 ~~FE~rL~~YRqqIEELE~~L~s 116 (346)
++||..|.|| |++||.-|+.
T Consensus 1 eqfe~EL~WC---I~QLelgl~~ 20 (124)
T PF15393_consen 1 EQFERELDWC---IQQLELGLQR 20 (124)
T ss_pred ChHHHHHHHH---HHHHHHHhhc
Confidence 4789999998 6677877773
No 280
>PRK14156 heat shock protein GrpE; Provisional
Probab=37.26 E-value=1.6e+02 Score=27.40 Aligned_cols=80 Identities=10% Similarity=0.145 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLA 167 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~ 167 (346)
-|.++..+||+.=.+..+.++++.+.-.. ..+.+|-.++.++-..+-+ ......|++.|+....++++
T Consensus 49 ~~lR~~AEfeN~rKR~~rE~e~~~~~a~~-----------~~~~~LLpVlDnLerAl~~-~~~~~~l~~Gv~mi~k~l~~ 116 (177)
T PRK14156 49 KYLRAHAEMQNIQRRANEERQQLQRYRSQ-----------DLAKAILPSLDNLERALAV-EGLTDDVKKGLEMVQESLIQ 116 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhHHhHHHHHHhC-cccchhHHHHHHHHHHHHHH
Confidence 45677888888877777777776665331 2244555666666655433 23446788899999999988
Q ss_pred HHHhcC----CCCCccc
Q 019120 168 DQRRRG----DGSDPFL 180 (346)
Q Consensus 168 ~~Rr~G----D~~DPFa 180 (346)
.-.++| +. .+|+
T Consensus 117 ~L~~~GV~~i~~-~~FD 132 (177)
T PRK14156 117 ALKEEGVEEVAV-DSFD 132 (177)
T ss_pred HHHHCCCeecCC-CCCC
Confidence 777655 44 3773
No 281
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=36.95 E-value=3.6e+02 Score=28.67 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
|-.+|..-+..+|...+++++.|-+.|.
T Consensus 273 ~~~rL~~~~~~~l~~~~~~l~~l~~~l~ 300 (440)
T COG1570 273 LQRRLHRALRRLLDQKKQRLEHLARRLQ 300 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444445555555555444
No 282
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=36.93 E-value=2.6e+02 Score=28.47 Aligned_cols=34 Identities=21% Similarity=0.109 Sum_probs=20.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCC
Q 019120 86 SAFLQQTVARFEKYLGEFRQWIEE-LEQLILLDPD 119 (346)
Q Consensus 86 s~YF~qlV~~FE~rL~~YRqqIEE-LE~~L~s~s~ 119 (346)
++=|.+++-+|-+-+.+||++..| +|..|...+-
T Consensus 251 S~efak~~G~lvna~m~lr~~~qe~~e~~L~~Lnl 285 (320)
T TIGR01834 251 SEENAKVHGKFINALMRLRIQQQEIVEALLKMLNL 285 (320)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 334555666677777777776544 5666665553
No 283
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=36.92 E-value=4.2e+02 Score=26.05 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHhhh
Q 019120 6 AQLQERMAVVKDMLRNTEIAVRSFMM 31 (346)
Q Consensus 6 ~~~~~l~~~V~~~lrntE~Avrs~~~ 31 (346)
.-+++-.+..++-|+++|.+++.|+.
T Consensus 173 ~fl~~ql~~~~~~l~~ae~~l~~fr~ 198 (362)
T TIGR01010 173 AFAENEVKEAEQRLNATKAELLKYQI 198 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777888888888888873
No 284
>PRK11519 tyrosine kinase; Provisional
Probab=36.89 E-value=6e+02 Score=27.84 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHhhh
Q 019120 5 KAQLQERMAVVKDMLRNTEIAVRSFMM 31 (346)
Q Consensus 5 k~~~~~l~~~V~~~lrntE~Avrs~~~ 31 (346)
.+-|++-+..+++-|...|.++..|+.
T Consensus 269 ~~fL~~ql~~l~~~L~~aE~~l~~fr~ 295 (719)
T PRK11519 269 LAFLAQQLPEVRSRLDVAENKLNAFRQ 295 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777778888889999999998873
No 285
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=36.88 E-value=6e+02 Score=27.86 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHhhchHHHHHHhhh
Q 019120 4 QKAQLQERMAVVKDMLRNTEIAVRSFMM 31 (346)
Q Consensus 4 ~k~~~~~l~~~V~~~lrntE~Avrs~~~ 31 (346)
..+-|++-+..+++.|.+.|.++..|..
T Consensus 268 a~~fL~~qL~~l~~~L~~aE~~l~~fr~ 295 (726)
T PRK09841 268 SLEFLQRQLPEVRSELDQAEEKLNVYRQ 295 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888899999999999999884
No 286
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=36.74 E-value=3.6e+02 Score=30.04 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 019120 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVE--TMKTAYLA 167 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve--~lKe~YL~ 167 (346)
+..++++|..|..++|.||.+.+ +|...+..+......|=++++++..++. ..|+.++.
T Consensus 417 i~~~~~~i~~~~~~ve~l~~e~~----------------~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~ 477 (652)
T COG2433 417 ITVYEKRIKKLEETVERLEEENS----------------ELKRELEELKREIEKLESELERFRREVRDKVRKDREIR 477 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 45667777777777777777644 5566667777777777777777766643 33344444
No 287
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=36.67 E-value=2.1e+02 Score=24.53 Aligned_cols=30 Identities=7% Similarity=0.122 Sum_probs=24.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 86 SAFLQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 86 s~YF~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
++++.+...+|++..+.++.+|+.+++-|.
T Consensus 31 ~~~~k~~~~~l~~~~~~~~~~l~~~~~el~ 60 (158)
T PF03938_consen 31 SPAGKDAQAKLQEKFKALQKELQAKQKELQ 60 (158)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888887777665
No 288
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=36.61 E-value=1.4e+02 Score=34.33 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 87 AFLQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 87 ~YF~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
--|.+.|..+|+++.+.+.||.+|.+.++
T Consensus 88 riyRrdv~llEddlk~~~sQiriLQn~c~ 116 (1265)
T KOG0976|consen 88 RIYRRDVNLLEDDLKHHESQIRILQNKCL 116 (1265)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999987655
No 289
>PRK13874 conjugal transfer protein TrbJ; Provisional
Probab=36.56 E-value=2.9e+02 Score=26.58 Aligned_cols=81 Identities=19% Similarity=0.193 Sum_probs=48.3
Q ss_pred cccchhhccCCCCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHH
Q 019120 71 VVPVFDFYRGLPKKPSAFLQQ------TVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFF 144 (346)
Q Consensus 71 ~~pv~Dfys~~p~~Ps~YF~q------lV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~F 144 (346)
..||+| |..|.+. .|+...++++.|..+|..+|+.++.... ........|...|.+ .
T Consensus 26 ~~~V~D--------~~N~~qn~ltaa~~l~Qi~nQiqqlqnQ~qm~~Nq~~Nl~~-----Lp~~~~~~i~~~i~~----~ 88 (230)
T PRK13874 26 QWIVYD--------PTNYAQNVLTAARALQQINNQITSLQNEAQMLINQARNLAS-----LPYSSLQQLQQSLAR----T 88 (230)
T ss_pred CCceeC--------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHHH----H
Confidence 337865 4557664 4677778888888889999988883321 001123333333332 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 145 VHVAAKAESIHQYVETMKTAYLAD 168 (346)
Q Consensus 145 vaLAArva~LHe~Ve~lKe~YL~~ 168 (346)
..|-.+.+.|-=.++++-+.|-..
T Consensus 89 ~~L~~qaq~i~y~~~~id~~f~~~ 112 (230)
T PRK13874 89 QQLLAQAQGIAYDVQSIDRAFQRL 112 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566677766677776666543
No 290
>PRK08073 flgL flagellar hook-associated protein FlgL; Validated
Probab=36.53 E-value=1.9e+02 Score=27.84 Aligned_cols=67 Identities=4% Similarity=0.110 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q 019120 94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA------AKAESIHQYVETMKTAYLA 167 (346)
Q Consensus 94 ~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLA------Arva~LHe~Ve~lKe~YL~ 167 (346)
++-..++.+|.+.|.+....|.... ..++.+...|+++.+..|..+ ...+.|.++++.+++..+.
T Consensus 53 ~~~~~~~~~~~~n~~~~~~~L~~~d---------~aL~~i~~~l~~~rel~v~a~n~t~s~~~r~aia~e~~~l~~~i~~ 123 (287)
T PRK08073 53 QHSLANIEQMQKDVADSKNVLNQTE---------NTLSGMSKSLTRVDQLVLQALNGTNDEKELKAIGAEIDQILKQVVY 123 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3344455667777888777777433 247888899999999777653 3456788888888887665
Q ss_pred HH
Q 019120 168 DQ 169 (346)
Q Consensus 168 ~~ 169 (346)
.-
T Consensus 124 ~~ 125 (287)
T PRK08073 124 LA 125 (287)
T ss_pred Hh
Confidence 43
No 291
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=36.44 E-value=3.9e+02 Score=25.58 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019120 148 AAKAESIHQYVETMKTA 164 (346)
Q Consensus 148 AArva~LHe~Ve~lKe~ 164 (346)
+...+.+|++++.|.+.
T Consensus 171 ~~na~~fkeQ~~kLa~N 187 (202)
T TIGR03513 171 AINSSSLKEEMEKMAAN 187 (202)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55556666666655554
No 292
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=36.22 E-value=1.4e+02 Score=29.86 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------hhcCCCCCCCCCCccccccHHHHHHHHHHHHH
Q 019120 90 QQTVARFEKYLGEFRQWIEELEQL-------ILLDPDRNSSSHGSSLLQSLPQVISNVHIFFV 145 (346)
Q Consensus 90 ~qlV~~FE~rL~~YRqqIEELE~~-------L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~Fv 145 (346)
++-+.++|+|=+.....||+||+. |+..-. + .-|+|..-++-+++|.+
T Consensus 3 ~~~L~eL~qrk~~Lq~eIe~LerR~~ri~~EmrtsFa----G----~Sq~lA~RVqGFkdYLv 57 (283)
T PF11285_consen 3 QEALKELEQRKQALQIEIEQLERRRERIEKEMRTSFA----G----QSQDLAIRVQGFKDYLV 57 (283)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc----c----chHHHHHHHhhhHHHHH
Confidence 456778888888888888888873 221111 1 13677777777777766
No 293
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=36.19 E-value=2.9e+02 Score=25.64 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 019120 98 KYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFV-HVAAKAESIHQY 157 (346)
Q Consensus 98 ~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~Fv-aLAArva~LHe~ 157 (346)
+.-..|+..|.+|+..|.-.++ ++|...|-++...|- .|+++++.|.+.
T Consensus 47 ~~yknyk~ki~eLke~lK~~~N-----------AEleekll~lq~lfq~Kl~aKL~aLKAa 96 (160)
T PF03978_consen 47 EAYKNYKKKINELKEDLKDVSN-----------AELEEKLLKLQKLFQDKLEAKLAALKAA 96 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999998883332 277777777777776 577777777664
No 294
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=36.14 E-value=2.4e+02 Score=26.04 Aligned_cols=30 Identities=30% Similarity=0.326 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLILLD 117 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~s~ 117 (346)
=..+.++++++.++.++..|++|+..|...
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888899999999999999988833
No 295
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=36.10 E-value=4.8e+02 Score=26.51 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
+..++...+.++|..+++.++.+++.|.
T Consensus 272 l~~rL~~a~~~~L~~~~~~L~~L~~rL~ 299 (438)
T PRK00286 272 LQQRLARAMRRRLEQKRQRLDQLARRLK 299 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3334444444555555556666555554
No 296
>PRK02119 hypothetical protein; Provisional
Probab=36.06 E-value=75 Score=25.29 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 90 QQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 90 ~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
.+=+.++|.++..-...||+|-..|.
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~ 33 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALI 33 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666655666666655554
No 297
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=35.81 E-value=2.8e+02 Score=28.14 Aligned_cols=71 Identities=14% Similarity=0.070 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 92 TVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTA 164 (346)
Q Consensus 92 lV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~ 164 (346)
.++++.+|.+.+++.+++++......++. ...+. ..-..|...|..-.+-=-.|-..|..|.+++.+++..
T Consensus 31 MAEqLqer~q~LKkk~~el~~~~~~~~d~-~~~~~-~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD 101 (319)
T PF09789_consen 31 MAEQLQERYQALKKKYRELIQEAAGFGDP-SIPPE-KENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGD 101 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccCCc-cCCcc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 38888888888888888877664433221 11111 1235677888888888888888888888887777665
No 298
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=35.71 E-value=56 Score=26.96 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 019120 93 VARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~ 115 (346)
|-++|+.|..||.-|.-||+.|.
T Consensus 28 vgd~e~eLerCK~sirrLeqevn 50 (79)
T PF09036_consen 28 VGDIEQELERCKASIRRLEQEVN 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999876
No 299
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=35.51 E-value=1.6e+02 Score=27.95 Aligned_cols=63 Identities=14% Similarity=0.108 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC--C--CCccccccHHHHHHHHHHHHHHHHHHHH
Q 019120 90 QQTVARFEKYLGEFRQWIEELEQLILLDPDRNSS--S--HGSSLLQSLPQVISNVHIFFVHVAAKAE 152 (346)
Q Consensus 90 ~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S--~--~gs~tpQ~L~~~L~~~hq~FvaLAArva 152 (346)
..+++++++|.+..-.-..++...|...++.... . .+......|...|..+-..|..++...+
T Consensus 42 ~~l~er~~kR~~~~A~d~~~f~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~s~~~~~~s~~~~ 108 (246)
T cd07597 42 RVLAERYEKRSQQQAADRAEFARLLNSLGELTARLYPWAGDSDTWGDINEGLSSLSKHFQLLSDLSE 108 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777777755432110 0 0123346677777777777776665544
No 300
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=35.30 E-value=94 Score=24.50 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HhcCC-CCCcc
Q 019120 150 KAESIHQYVETMKTAYLADQ--RRRGD-GSDPF 179 (346)
Q Consensus 150 rva~LHe~Ve~lKe~YL~~~--Rr~GD-~~DPF 179 (346)
-++.|.+++.++|.+|.++| +..|. ..||-
T Consensus 13 s~~eL~~~l~elk~eLf~LR~q~~~~~~l~n~~ 45 (69)
T PRK14549 13 SPEEREEKLEELKLELLKERAQAAMGGAPENPG 45 (69)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCcCccccH
Confidence 45889999999999999998 57777 78885
No 301
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=35.15 E-value=62 Score=29.93 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=35.5
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHH
Q 019120 84 KPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHV 147 (346)
Q Consensus 84 ~Ps~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaL 147 (346)
.|.+= ..+|.=-|.+|+..|+++++||..|...-. ...+-..+++++|+.-+.|
T Consensus 34 ~ph~~-~~avSL~erQ~~~LR~~~~~L~~~l~~Li~---------~Ar~Ne~~~~~~~~l~l~L 87 (225)
T PF04340_consen 34 LPHPS-GGAVSLVERQLERLRERNRQLEEQLEELIE---------NARENEAIFQRLHRLVLAL 87 (225)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 34442 457888899999999999999999883221 1345567777777777765
No 302
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.13 E-value=1.8e+02 Score=33.96 Aligned_cols=70 Identities=13% Similarity=0.063 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 92 TVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD 168 (346)
Q Consensus 92 lV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~ 168 (346)
+|.++..++...+.+|++||..+..... + .+..+|..-+..+..-+-.|-.++..+.+..+.++++...+
T Consensus 793 ~i~r~~~ei~~l~~qie~l~~~l~~~~~-~------~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 793 IMERFQMELKDVERKIAQQAAKLQGSDL-D------RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc-c------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788888899999999988884332 1 23566666666665555555444444444444444433333
No 303
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=35.01 E-value=24 Score=30.11 Aligned_cols=47 Identities=13% Similarity=0.170 Sum_probs=11.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 019120 131 QSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSD 177 (346)
Q Consensus 131 Q~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~Rr~GD~~D 177 (346)
++|...+.+=|+-||.|...+..+.+.|++++..-.++++...+..+
T Consensus 44 ~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~~~~ 90 (133)
T PF06148_consen 44 NELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVESVRD 90 (133)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777778889999999999999999999988888874333333
No 304
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=34.89 E-value=1.6e+02 Score=24.00 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 90 QQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 90 ~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
.+.++-+++|+..++.+|+++++.+.
T Consensus 76 ~eA~~~l~~r~~~l~~~~~~l~~~~~ 101 (120)
T PF02996_consen 76 EEAIEFLKKRIKELEEQLEKLEKELA 101 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555554
No 305
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=34.84 E-value=2.1e+02 Score=32.50 Aligned_cols=69 Identities=12% Similarity=0.067 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLA 167 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~ 167 (346)
=|.++++..+++...++..|++++..+. ...+...+.+...-+..+..++....+.++.+|+.-.+
T Consensus 494 ~l~~llee~~~~~~~~~~~~l~~~~~~k--------------~~~~~q~~~~~~~~~~~~~~~l~~kke~i~q~re~~~~ 559 (809)
T KOG0247|consen 494 TLDQLLEELEKRILLRTKEILQNNKSLK--------------EKECRQKLMNAQLESQMLSSQLNDKKEQIEQLRDEIER 559 (809)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhH--------------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3455566666666666665555555555 22334444555555578888888888888888887555
Q ss_pred HHH
Q 019120 168 DQR 170 (346)
Q Consensus 168 ~~R 170 (346)
+-+
T Consensus 560 ~~k 562 (809)
T KOG0247|consen 560 LKK 562 (809)
T ss_pred Hhh
Confidence 443
No 306
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=34.79 E-value=4.1e+02 Score=27.23 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=12.4
Q ss_pred HHHhhchHHHHHHhhhccccc
Q 019120 16 KDMLRNTEIAVRSFMMLRPRF 36 (346)
Q Consensus 16 ~~~lrntE~Avrs~~~lr~rf 36 (346)
.+-.+|+|.+++.|++.++=+
T Consensus 322 f~~~~s~~~~~~ll~~f~~L~ 342 (579)
T PF08385_consen 322 FDDCSSPEEAFRLLQKFKSLL 342 (579)
T ss_pred hcCcCCHHHHHHHHHHHHhHh
Confidence 344456677777777655444
No 307
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=34.75 E-value=1.2e+02 Score=29.10 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=13.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q 019120 132 SLPQVISNVHIFFVHVAAKAE 152 (346)
Q Consensus 132 ~L~~~L~~~hq~FvaLAArva 152 (346)
+|..+.+++.+.++.|-.++.
T Consensus 83 ~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 83 QLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 455667777777777755443
No 308
>PRK11459 multidrug resistance outer membrane protein MdtQ; Provisional
Probab=34.70 E-value=4.6e+02 Score=26.75 Aligned_cols=66 Identities=11% Similarity=0.016 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 90 QQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQ 169 (346)
Q Consensus 90 ~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~ 169 (346)
-++-.+.+.....|++.+++.++.+.. ...++...+ .....+..+++...+.++..++.|--.+
T Consensus 364 G~~~a~~~~A~a~~~~a~~~y~~t~~~------------a~~eV~~a~----~~~~~~~~~~~~~~~~~~~a~~~~~la~ 427 (478)
T PRK11459 364 GRLNANLDIAKAQSNLSIASYNKAVVD------------AVNDVARAA----SQVETLAEKNQHQQQIERDALRVVGLAQ 427 (478)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788888888999998888888761 122333333 3333455566667777777777666655
Q ss_pred Hh
Q 019120 170 RR 171 (346)
Q Consensus 170 Rr 171 (346)
.+
T Consensus 428 ~r 429 (478)
T PRK11459 428 AR 429 (478)
T ss_pred HH
Confidence 43
No 309
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=34.62 E-value=5.6e+02 Score=27.13 Aligned_cols=63 Identities=19% Similarity=0.291 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 97 EKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETM 161 (346)
Q Consensus 97 E~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~l 161 (346)
+++|.+.++.|+++|+.+...... ...- ...+.++..-|..+-...+..+..+..+..+|.++
T Consensus 37 ~~~l~q~q~ei~~~~~~i~~~~~~-~~kL-~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~ 99 (420)
T COG4942 37 DKQLKQIQKEIAALEKKIREQQDQ-RAKL-EKQLKSLETEIASLEAQLIETADDLKKLRKQIADL 99 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHH
Confidence 377777777777777776633210 0000 01234445555555555666665555555554443
No 310
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=34.62 E-value=2.8e+02 Score=29.76 Aligned_cols=23 Identities=9% Similarity=0.323 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 019120 93 VARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~ 115 (346)
..++++++..+++.|+.|++...
T Consensus 45 ~~~~~~~~~~~~~~l~~L~~~~~ 67 (646)
T PRK05771 45 LRKLRSLLTKLSEALDKLRSYLP 67 (646)
T ss_pred HhHHHHHHHHHHHHHHHHHHhcc
Confidence 55667777777777777777654
No 311
>PRK07192 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=34.54 E-value=1.8e+02 Score=27.92 Aligned_cols=68 Identities=10% Similarity=0.159 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Q 019120 94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAA------KAESIHQYVETMKTAYLA 167 (346)
Q Consensus 94 ~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAA------rva~LHe~Ve~lKe~YL~ 167 (346)
++-..++..|.+.|.+....|.... ..++.+...|+++.+..+..+. ....|.++++.++++-+.
T Consensus 53 ~~~~~~~~~~~~n~~~a~~~l~~~d---------~~L~~i~~~l~~~r~~~v~a~n~t~~~~~~~~~a~e~~~l~~~l~~ 123 (305)
T PRK07192 53 SREQSNNSQYADNIANLSNSLNNQE---------GHLSGVNDQLQSIRSLLVAAGNGSLSDEDRSAMATELRSMLDSLLG 123 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444567788888888888887443 2478899999999998887653 566788888888887666
Q ss_pred HHH
Q 019120 168 DQR 170 (346)
Q Consensus 168 ~~R 170 (346)
.-.
T Consensus 124 ~~N 126 (305)
T PRK07192 124 LAN 126 (305)
T ss_pred HHC
Confidence 443
No 312
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=34.42 E-value=83 Score=24.48 Aligned_cols=33 Identities=9% Similarity=0.299 Sum_probs=20.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 130 LQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYL 166 (346)
Q Consensus 130 pQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL 166 (346)
+++|.+.|+.+|.-+.+| ..||+.|.+..|-|-
T Consensus 7 f~eL~D~~~~L~~n~~~L----~~ihesL~~FNESFa 39 (58)
T PF08653_consen 7 FAELSDSMETLDKNMEQL----NQIHESLSDFNESFA 39 (58)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 455666666666666544 667777766666543
No 313
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=34.39 E-value=59 Score=23.29 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019120 92 TVARFEKYLGEFRQWIEELEQL 113 (346)
Q Consensus 92 lV~~FE~rL~~YRqqIEELE~~ 113 (346)
|+-++|++|......|++|.+.
T Consensus 16 LL~R~E~kld~L~~~i~~L~~~ 37 (38)
T PF12841_consen 16 LLVRIEKKLDELTESINELSEA 37 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4789999999999999998754
No 314
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=34.39 E-value=66 Score=28.14 Aligned_cols=29 Identities=17% Similarity=0.292 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 019120 90 QQTVARFEKYLGEFRQWIEELEQLILLDP 118 (346)
Q Consensus 90 ~qlV~~FE~rL~~YRqqIEELE~~L~s~s 118 (346)
.+++++.+++|....+.|.++|+++.+..
T Consensus 80 ~~~l~~~~~~~~~~e~Rlr~mE~yVTS~~ 108 (118)
T PRK10697 80 SELLDEVDRELAAGEQRLREMERYVTSDT 108 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46789999999999999999999998544
No 315
>PRK08913 flgL flagellar hook-associated protein FlgL; Validated
Probab=34.37 E-value=1.2e+02 Score=28.86 Aligned_cols=68 Identities=6% Similarity=-0.059 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 019120 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAA----KAESIHQYVETMKTAYLAD 168 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAA----rva~LHe~Ve~lKe~YL~~ 168 (346)
++.=..++++|...|++....|.... ..++.|...|.++.+..|..+. ..+.|.++++.+.++.+..
T Consensus 54 l~~~~~~~~q~~~ni~~a~~~l~~~e---------~aL~~i~~~l~~~r~l~v~a~ngt~~~~~~i~~e~~~l~~~l~~~ 124 (301)
T PRK08913 54 LQVSVTRAQSYIDAATLAQSKVQVMY---------SAVGQIADLAQQLRSSLSAASTGTSTDATSAAASAQQALTQLATL 124 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 44555677888888888888888443 3478889999999998886321 3467777888888876664
Q ss_pred H
Q 019120 169 Q 169 (346)
Q Consensus 169 ~ 169 (346)
-
T Consensus 125 ~ 125 (301)
T PRK08913 125 L 125 (301)
T ss_pred H
Confidence 4
No 316
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=34.37 E-value=2e+02 Score=32.83 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMK 162 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lK 162 (346)
+..-+.++|++++.++++|+.+|+.|...+= - .-+|.+ +++.-.+-+..+=.+++.|.+.|+++|
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F--~----~kAp~~---vve~e~~kl~~~~~~l~~l~~~l~~l~ 991 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKISIPNY--E----DKVPED---VRKLNDEKIDELNEEIKQLEQAIEELK 991 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchh--h----hcCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888999999999999998888762220 0 023433 333333333444456666666666665
No 317
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=34.33 E-value=91 Score=29.74 Aligned_cols=77 Identities=13% Similarity=0.076 Sum_probs=39.3
Q ss_pred chhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHH
Q 019120 74 VFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAES 153 (346)
Q Consensus 74 v~Dfys~~p~~Ps~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~ 153 (346)
.+|-+.. .-|++=||+.|.+ +|=..+.-.++|-|++-.... ..+.--..|...++-+..||..|++
T Consensus 95 A~DLm~~--e~Pse~YWk~lAE--~RR~AL~eaL~ENe~Lh~~ie----------~~~eEi~~lk~en~~L~elae~~~~ 160 (200)
T PF07412_consen 95 AEDLMSS--EGPSENYWKELAE--ERRKALEEALEENEKLHKEIE----------QKDEEIAKLKEENEELKELAEHVQY 160 (200)
T ss_dssp CCCCC-S--SSCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHhhc--CCChHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4465554 3455555555542 233333334555554322111 0223344666777777778888887
Q ss_pred HHHHHHHHHHH
Q 019120 154 IHQYVETMKTA 164 (346)
Q Consensus 154 LHe~Ve~lKe~ 164 (346)
|.+-|+.+...
T Consensus 161 la~~ie~l~~~ 171 (200)
T PF07412_consen 161 LAEVIERLTGQ 171 (200)
T ss_dssp HHHHHHHCC--
T ss_pred HHHHHHHHhcc
Confidence 77777776654
No 318
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=34.24 E-value=2.8e+02 Score=23.17 Aligned_cols=83 Identities=16% Similarity=0.194 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CC--CCC--CCCcccc----------------------ccHHHHH
Q 019120 87 AFLQQTVARFEKYLGEFRQWIEELEQLILLDP---DR--NSS--SHGSSLL----------------------QSLPQVI 137 (346)
Q Consensus 87 ~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s---~~--~~S--~~gs~tp----------------------Q~L~~~L 137 (346)
+.|.+-++.+..++..+...|++++..+.... .. ... +.|.... .++..++
T Consensus 9 ~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE~~~~eA~ 88 (126)
T TIGR00293 9 QILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVEKDAEEAI 88 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEEecHHHHH
Confidence 35666777777777777777777777655221 10 000 1111100 3455565
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 138 SNVHIFFVHVAAKAESIHQYVETMKTAYLADQ 169 (346)
Q Consensus 138 ~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~ 169 (346)
.-+..---.|-..+..|.+.++.+++++....
T Consensus 89 ~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~ 120 (126)
T TIGR00293 89 EFLKKRIEELEKAIEKLQEALAELASRAQQLE 120 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555566666666666666655544
No 319
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=33.96 E-value=4e+02 Score=25.74 Aligned_cols=82 Identities=11% Similarity=0.164 Sum_probs=56.0
Q ss_pred cchhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHH
Q 019120 73 PVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAE 152 (346)
Q Consensus 73 pv~Dfys~~p~~Ps~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva 152 (346)
-+.+++..-.....+-..+.+.++++.|...+.|.+.....|. .. + ..+.+|...+......+|.+- .+.
T Consensus 184 ~l~~Ll~~g~~l~~~~~~~~~~~L~~~l~~~~~We~ka~~~L~--~~-~------~~l~~Le~l~~~~~~ipv~~~-~~~ 253 (335)
T PF08429_consen 184 ELRELLDEGERLGIPSDEKLMAELQELLKQGEEWEEKAKELLS--RP-R------VSLEQLEALLEEAENIPVSLP-SLD 253 (335)
T ss_pred HHHHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHh--cC-C------CCHHHHHHHHHHHhcCCCchH-HHH
Confidence 3555555444554466677788899999999999999999988 21 1 336777777777777777663 355
Q ss_pred HHHHHHHHHHHH
Q 019120 153 SIHQYVETMKTA 164 (346)
Q Consensus 153 ~LHe~Ve~lKe~ 164 (346)
.|.+.+++.|+-
T Consensus 254 ~L~~~l~kak~w 265 (335)
T PF08429_consen 254 KLKDALQKAKEW 265 (335)
T ss_pred HHHHHHHHHHHH
Confidence 666666666653
No 320
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=33.95 E-value=4.1e+02 Score=25.29 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=27.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 131 QSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 131 Q~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
..|...+...+..=+.|=.+++.|.++++-+|..|-..-+
T Consensus 106 ~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~ 145 (312)
T PF00038_consen 106 ESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIE 145 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 3445555555556666777888888888888887776444
No 321
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=33.91 E-value=3.3e+02 Score=25.23 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhhchHHHH
Q 019120 5 KAQLQERMAVVKDMLRNTEIAV 26 (346)
Q Consensus 5 k~~~~~l~~~V~~~lrntE~Av 26 (346)
+..|++++.....+.+..+..+
T Consensus 26 ~~~l~~~~~~~~~l~~~i~~~l 47 (302)
T PF10186_consen 26 RSELQQLKEENEELRRRIEEIL 47 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555444
No 322
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=33.81 E-value=5.9e+02 Score=26.81 Aligned_cols=12 Identities=0% Similarity=0.252 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 019120 151 AESIHQYVETMK 162 (346)
Q Consensus 151 va~LHe~Ve~lK 162 (346)
|+.|..+|+.+.
T Consensus 380 l~~~~~~~~~le 391 (582)
T PF09731_consen 380 LAELNSRLKALE 391 (582)
T ss_pred HHHHHHHHHHHH
Confidence 333333343333
No 323
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=33.78 E-value=3.4e+02 Score=24.04 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=10.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 019120 132 SLPQVISNVHIFFVHVAAKAESI 154 (346)
Q Consensus 132 ~L~~~L~~~hq~FvaLAArva~L 154 (346)
.|..-++.+|+.+..|-.|+..|
T Consensus 100 ~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 100 QIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444
No 324
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=33.61 E-value=74 Score=23.82 Aligned_cols=29 Identities=14% Similarity=0.334 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHH--HhcCCCCCcc
Q 019120 151 AESIHQYVETMKTAYLADQ--RRRGDGSDPF 179 (346)
Q Consensus 151 va~LHe~Ve~lKe~YL~~~--Rr~GD~~DPF 179 (346)
.++|++++.++|+.+.++| +..|...||-
T Consensus 7 ~~EL~~~l~~lr~eLf~Lr~~~~~~~~~~~~ 37 (55)
T TIGR00012 7 KEELAKKLDELKKELFELRFQKATGQLAKPH 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccch
Confidence 5789999999999999988 4677777765
No 325
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=33.54 E-value=89 Score=33.49 Aligned_cols=72 Identities=17% Similarity=0.077 Sum_probs=46.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 86 SAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETM 161 (346)
Q Consensus 86 s~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~l 161 (346)
.+++++=++.+++.|+.+.+-.+++++.|...-....+ ..-.+|..++..+++.+|..|-+.=.++..|++.
T Consensus 449 ~~~Lqq~~~~l~~~L~~a~~d~~~i~e~~~~el~~~~~----~~~~~l~~~l~~~~~~hie~~~~~Le~W~~v~~~ 520 (524)
T COG5391 449 IESLQQDKEKLEEQLAIAEKDAQEINEELKNELKFFFS----VRNSDLEKILKSVADSHIEWAEENLEIWKSVKEQ 520 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666667777777777777666666665522110111 1236788888888888888888777777766653
No 326
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=33.48 E-value=1.5e+02 Score=25.34 Aligned_cols=45 Identities=13% Similarity=0.250 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHH
Q 019120 94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHV 147 (346)
Q Consensus 94 ~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaL 147 (346)
.++.+--..+..|+|+|+..|....+ + -+.+..+|.|.+..|-.+
T Consensus 17 ~~l~~lS~~L~~qle~L~~kl~~m~d--g-------~e~Va~Vl~NW~nV~r~I 61 (103)
T PF08654_consen 17 KQLRDLSADLASQLEALSEKLETMAD--G-------AEAVASVLANWQNVFRAI 61 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--c-------cHHHHHHHHhHHHHHHHH
Confidence 34445555566788888888885543 1 367888999999888766
No 327
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=33.47 E-value=1.1e+02 Score=32.81 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 019120 86 SAFLQQTVARFEKYLGEFRQWIEELEQLILLDP 118 (346)
Q Consensus 86 s~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s 118 (346)
..+|.+|.+.+|++|++..+-|+.||..|.+.+
T Consensus 423 ~~~~~~L~~~~~~d~~~~~~~i~~l~~~~~sl~ 455 (561)
T PF00429_consen 423 TQQYRQLSNALEEDLQALEDSISALQEQLTSLA 455 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999877443
No 328
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=33.43 E-value=1.8e+02 Score=33.40 Aligned_cols=65 Identities=15% Similarity=0.135 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKT 163 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe 163 (346)
++.+.+-|++..++|..||+.|+..-.....+ .-....|..+|+.-+.--.+|-..|-+++++-+
T Consensus 896 ad~ikK~~~~m~~~ik~Le~dlk~~~~~~~e~------dkF~ekM~~F~e~a~eq~~~ls~M~~~M~~lye 960 (1102)
T KOG1924|consen 896 ADEIKKNLQQMENQIKKLERDLKNFKIAGNEH------DKFVEKMTSFHEKAREQYSKLSSMHGNMEKLYE 960 (1102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcch------hhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888888888998888444311111 223556666666555555555555555544433
No 329
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=33.39 E-value=4.2e+02 Score=28.96 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019120 136 VISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRR 171 (346)
Q Consensus 136 ~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~Rr 171 (346)
.|....+.....-.+++.|++++++++++|++..+.
T Consensus 329 ~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~ 364 (557)
T COG0497 329 KIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEA 364 (557)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555667888999999999999998763
No 330
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=33.29 E-value=2.7e+02 Score=28.04 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 92 TVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 92 lV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
.+..+|.+|.+.+.+-|+|-+.++
T Consensus 92 q~s~Leddlsqt~aikeql~kyiR 115 (333)
T KOG1853|consen 92 QESQLEDDLSQTHAIKEQLRKYIR 115 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888777776666666555
No 331
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=33.23 E-value=5.7e+02 Score=27.55 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=19.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 130 LQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTA 164 (346)
Q Consensus 130 pQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~ 164 (346)
.+.|...+..+..-.-.+-.++..+.++++.+++.
T Consensus 423 i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~ 457 (650)
T TIGR03185 423 IAQLLEELGEAQNELFRSEAEIEELLRQLETLKEA 457 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556655655555555566655555544443
No 332
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=33.16 E-value=2.8e+02 Score=25.33 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=19.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 130 LQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 130 pQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
-.+|..+-+..|+.=+.| .+...|+.+|..||
T Consensus 76 E~dik~AYe~A~~lQ~~L---------~~~re~E~qLr~rR 107 (159)
T PF05384_consen 76 EEDIKEAYEEAHELQVRL---------AMLREREKQLRERR 107 (159)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
Confidence 356777777666665555 23444566666666
No 333
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=33.09 E-value=1.9e+02 Score=23.63 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 019120 93 VARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~ 115 (346)
|+++|+.+.++..-+++||..|.
T Consensus 2 I~eme~~y~~~~~~l~~le~~l~ 24 (90)
T PF14131_consen 2 IQEMEKIYNEWCELLEELEEALE 24 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555544
No 334
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=33.06 E-value=2.3e+02 Score=31.53 Aligned_cols=15 Identities=0% Similarity=0.007 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 019120 89 LQQTVARFEKYLGEF 103 (346)
Q Consensus 89 F~qlV~~FE~rL~~Y 103 (346)
..+.-+.+++|+...
T Consensus 556 ~~~ar~ei~~rv~~L 570 (717)
T PF10168_consen 556 QDLAREEIQRRVKLL 570 (717)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444555554333
No 335
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=33.01 E-value=3e+02 Score=23.84 Aligned_cols=88 Identities=11% Similarity=0.106 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAK------AESIHQYVETMK 162 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAAr------va~LHe~Ve~lK 162 (346)
+.+-++++++++......++.+.+.+...-. +.. ....+.+...|-.+.+.|..+... ...+++.++.+.
T Consensus 23 l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~-~~~---~~~~~~~~~~ll~v~D~l~~a~~~~~~~~~~~~~~~g~~~~~ 98 (165)
T PF01025_consen 23 LEKEIEELKERLLRLQAEFENYRKRLEKEKE-EAK---KYALEKFLKDLLPVLDNLERALEAAKSNEEEESLLEGLEMIL 98 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HCCHHHHHHHHHHHHHHHHHHHCC-SHHCTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 4444555555555444444444443331110 000 011233344444444444444332 357777788888
Q ss_pred HHHHHHHHh-----cCCCCCccc
Q 019120 163 TAYLADQRR-----RGDGSDPFL 180 (346)
Q Consensus 163 e~YL~~~Rr-----~GD~~DPFa 180 (346)
+.+++.-.+ .....++|+
T Consensus 99 ~~l~~~L~~~Gv~~i~~~G~~FD 121 (165)
T PF01025_consen 99 KQLEDILEKNGVEEIEPVGEPFD 121 (165)
T ss_dssp HHHHHHHHTTTEEEE--TSSB--
T ss_pred HHHHHHHHHCCCEecCCCCCCCC
Confidence 888776553 233356773
No 336
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=32.86 E-value=3.4e+02 Score=25.28 Aligned_cols=29 Identities=10% Similarity=0.328 Sum_probs=21.1
Q ss_pred ccHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 019120 85 PSAFLQQ---TVARFEKYLGEFRQWIEELEQL 113 (346)
Q Consensus 85 Ps~YF~q---lV~~FE~rL~~YRqqIEELE~~ 113 (346)
+.+||.+ -|+.||++|....+++|-|=++
T Consensus 10 ~D~~F~~~k~~i~~Le~~Lk~l~~~~e~lv~~ 41 (224)
T cd07623 10 TDQWFEEKQQQIENLDQQLRKLHASVESLVNH 41 (224)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567754 4778888888888888766654
No 337
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=32.85 E-value=1.2e+02 Score=29.51 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019120 87 AFLQQTVARFEKYLGEFRQWIEELEQLILL 116 (346)
Q Consensus 87 ~YF~qlV~~FE~rL~~YRqqIEELE~~L~s 116 (346)
|||.. =.+|+..|..-+..|++||+.|..
T Consensus 174 PYfe~-K~~~~~~l~~~k~~v~~Le~~v~~ 202 (239)
T PF05276_consen 174 PYFEL-KAKFNQQLEEQKEKVEELEAKVKQ 202 (239)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35543 456999999999999999999983
No 338
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=32.79 E-value=3.9e+02 Score=24.41 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 91 QTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 91 qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
++-.++++.......|-+..+..|.
T Consensus 55 ~le~~~~~~~~~~~~~~~~A~~Al~ 79 (221)
T PF04012_consen 55 RLERKLDEAEEEAEKWEKQAELALA 79 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444455555
No 339
>PHA01794 hypothetical protein
Probab=32.77 E-value=1.8e+02 Score=26.22 Aligned_cols=53 Identities=23% Similarity=0.353 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 89 LQQTVARFEKYLG-------EFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETM 161 (346)
Q Consensus 89 F~qlV~~FE~rL~-------~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~l 161 (346)
+..|..++|+.|. ..++|||.+|+.+...-.+.. .+ +.|++.+.+-+++|
T Consensus 73 ~e~lF~eleqEm~~SGFF~~ki~kyien~EK~~~yl~~k~~--------~E---------------~~Q~~a~kdl~~rm 129 (134)
T PHA01794 73 TEGLFAELEKEMVDSGFFRAKIKKYIENMEKSARYLKAKDD--------TE---------------ATQAKAIKDLIGRM 129 (134)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhccCc--------HH---------------HHHHHHHHHHHHHH
Confidence 5666777777774 467789999998884443111 11 34677777778888
Q ss_pred HHH
Q 019120 162 KTA 164 (346)
Q Consensus 162 Ke~ 164 (346)
|..
T Consensus 130 Kk~ 132 (134)
T PHA01794 130 KKA 132 (134)
T ss_pred Hhh
Confidence 753
No 340
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=32.71 E-value=4e+02 Score=24.57 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019120 147 VAAKAESIHQYVETMKT 163 (346)
Q Consensus 147 LAArva~LHe~Ve~lKe 163 (346)
|-.+...|..++.+++.
T Consensus 132 L~~e~~~L~~~~~~l~~ 148 (189)
T PF10211_consen 132 LEEEKEELEKQVQELKN 148 (189)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444433333
No 341
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=32.45 E-value=3.5e+02 Score=24.64 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
|+..++.+..+-|.+....|+-||..+.
T Consensus 21 ~li~tlkkv~~tldevakt~~~l~~qv~ 48 (139)
T COG4768 21 YLIITLKKVSKTLDEVAKTLKGLTSQVD 48 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666655554
No 342
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=32.43 E-value=3.2e+02 Score=23.34 Aligned_cols=39 Identities=8% Similarity=0.066 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 132 SLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 132 ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
++..++.-+..-.-.|-..+..|.+.+..+++++-.+++
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~ 129 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQ 129 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666666666555544
No 343
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=32.32 E-value=2.3e+02 Score=35.53 Aligned_cols=94 Identities=17% Similarity=0.161 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Q 019120 96 FEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVE----------TMKTAY 165 (346)
Q Consensus 96 FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve----------~lKe~Y 165 (346)
|-+.+...+.||++||..|++... +-. .-++.+|-+..+.+-.-....+.+|+.|..... ++.+.-
T Consensus 1380 ~~qs~~D~~~~l~~le~qL~S~D~--G~D--L~Svn~llkKqq~lEsem~~~~~kv~el~s~~~~ma~~~~~a~~I~~~~ 1455 (2473)
T KOG0517|consen 1380 LLQSLADAKKKLDELESQLQSDDT--GKD--LTSVNDLLKKQQVLESEMEVRAQKVAELQSQAKAMAEEGHSAENIEETT 1455 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC--CcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccCcchhhHHHHH
Confidence 334455566788888888885543 111 012333433333333444455556666554433 334444
Q ss_pred HHHHHhcCCCCCccchhhHHHHHHHHHH
Q 019120 166 LADQRRRGDGSDPFLEADRRETARQEAA 193 (346)
Q Consensus 166 L~~~Rr~GD~~DPFaEadr~Eaa~q~~a 193 (346)
++..+++-+-.+|-.+..+.-.+.++.+
T Consensus 1456 ~~v~~Rf~~L~~Pl~~R~~~Le~S~e~h 1483 (2473)
T KOG0517|consen 1456 LAVLERFEDLLGPLQERRKQLEASKELH 1483 (2473)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4444555566677777766666666666
No 344
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=32.23 E-value=71 Score=24.92 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 019120 93 VARFEKYLGEFRQWIEELEQLILL 116 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s 116 (346)
|+++++|+...+..|+-+|..+..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999873
No 345
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=32.22 E-value=4.6e+02 Score=25.73 Aligned_cols=76 Identities=18% Similarity=0.094 Sum_probs=49.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 019120 86 SAFLQQTVARFEKYLGEFRQWIEELEQLIL-LDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIH-QYVETMKT 163 (346)
Q Consensus 86 s~YF~qlV~~FE~rL~~YRqqIEELE~~L~-s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LH-e~Ve~lKe 163 (346)
++=..+++.+-|.--...++.-|||+-++. -.+. - ..-.+.+...+..+|+-|-. .+..+. +.|+++|.
T Consensus 68 ~~sW~~il~QTE~isk~~~~~Aeeln~~~~~kLs~---L---~~~k~~~rK~~~~~~q~i~~---e~~~~t~~eveK~Kk 138 (237)
T cd07685 68 SQSWAVLVSQTETLSQVLRKHAEDLNAGPLSKLSL---L---IRDKQQLRKTFSEQWQLLKQ---EYTKTTQQDIEKLKS 138 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 666788899999999999999999998754 1110 0 00134444555555555542 233444 57999999
Q ss_pred HHHHHHH
Q 019120 164 AYLADQR 170 (346)
Q Consensus 164 ~YL~~~R 170 (346)
.|-..++
T Consensus 139 ~Y~~~c~ 145 (237)
T cd07685 139 QYRSLAK 145 (237)
T ss_pred HHHHHHH
Confidence 9998886
No 346
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=32.16 E-value=2.7e+02 Score=24.28 Aligned_cols=32 Identities=13% Similarity=0.260 Sum_probs=21.4
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 019120 137 ISNVHIFFVHV----AAKAESIHQYVETMKTAYLAD 168 (346)
Q Consensus 137 L~~~hq~FvaL----AArva~LHe~Ve~lKe~YL~~ 168 (346)
|+.-|++.+.| .-+|+.|...|.++|+.|...
T Consensus 80 l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Q 115 (120)
T PF12325_consen 80 LQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQ 115 (120)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555544 346778888899999988763
No 347
>PRK09546 zntB zinc transporter; Reviewed
Probab=32.11 E-value=2.5e+02 Score=27.29 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHhh
Q 019120 100 LGEFRQWIEELEQLIL 115 (346)
Q Consensus 100 L~~YRqqIEELE~~L~ 115 (346)
+..|-..+|+||..+.
T Consensus 152 vd~~~~~l~~i~~~ld 167 (324)
T PRK09546 152 TDHASEFIEELHDKII 167 (324)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3355556666665554
No 348
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.77 E-value=5.6e+02 Score=25.93 Aligned_cols=52 Identities=13% Similarity=0.003 Sum_probs=34.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCccchhhHHHHHHHHHH
Q 019120 131 QSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR-RRGDGSDPFLEADRRETARQEAA 193 (346)
Q Consensus 131 Q~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~R-r~GD~~DPFaEadr~Eaa~q~~a 193 (346)
+++..+++.+.+.++..++ +.....=++.+++|-...| . |+||.|.+.+++.
T Consensus 127 ~~~~~a~~r~q~~e~~~~~--qkRrreK~e~~eaRqRV~~~I---------e~DKaeRka~~e~ 179 (290)
T KOG2689|consen 127 DEMSAAKRRLQDDEMRRAA--QKRRREKAEDEEARQRVLRQI---------ERDKAERKAKYEN 179 (290)
T ss_pred cHHHHHHHHHHHHHHHHHH--HHHHHHhhhhHHHHHHHHHHH---------HHhHHHHHHHhcc
Confidence 6788999999999998843 3333222344455555444 5 7888888777775
No 349
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=31.75 E-value=2.1e+02 Score=30.29 Aligned_cols=26 Identities=8% Similarity=0.069 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 145 VHVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 145 vaLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
......++.|.++++++++.|..+-.
T Consensus 342 ~~~~~~le~L~~el~~l~~~l~~~a~ 367 (563)
T TIGR00634 342 DDSDESLEALEEEVDKLEEELDKAAV 367 (563)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677777778888887776654
No 350
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion]
Probab=31.73 E-value=1.3e+02 Score=29.82 Aligned_cols=42 Identities=14% Similarity=0.231 Sum_probs=36.7
Q ss_pred ccccHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q 019120 129 LLQSLPQVISNVHIFFVHVA------AKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 129 tpQ~L~~~L~~~hq~FvaLA------Arva~LHe~Ve~lKe~YL~~~R 170 (346)
.++++..+|+++++.-|+.+ .....|.++|+.++++..+.=-
T Consensus 79 aL~~~~~~lqrirelavqaan~t~s~~dr~~iq~Ei~~l~~el~~ian 126 (360)
T COG1344 79 ALSEISKILQRIKELAVQAANGTLSDADRAAIQKEIEQLLDELDNIAN 126 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47889999999999999998 7888999999999999887543
No 351
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=31.67 E-value=2.6e+02 Score=22.14 Aligned_cols=63 Identities=19% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD 168 (346)
Q Consensus 94 ~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~ 168 (346)
.++++.|...+..+++++..+..... .+..+-.+.++.=-.|-.....||+.|++.++.-|..
T Consensus 3 ~~L~~~l~~l~~~~~~~~~~~~~l~~------------~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~ 65 (127)
T smart00502 3 EALEELLTKLRKKAAELEDALKQLIS------------IIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLED 65 (127)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 352
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=31.53 E-value=1.7e+02 Score=29.14 Aligned_cols=54 Identities=9% Similarity=0.175 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 97 EKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMK 162 (346)
Q Consensus 97 E~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lK 162 (346)
|+-|.++-..+++||+... +.+.-|..-++..++-..+|-.|+..+.++|+.++
T Consensus 17 eEti~qi~~aL~~L~~v~~------------diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~ 70 (297)
T PF11945_consen 17 EETILQIADALEYLDKVSN------------DIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQ 70 (297)
T ss_pred HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555533 22334444444444444444444444444444443
No 353
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=31.53 E-value=2.1e+02 Score=27.72 Aligned_cols=27 Identities=19% Similarity=0.475 Sum_probs=13.0
Q ss_pred ccCCCCCccHHHH---HHHHHHHHHHHHHHH
Q 019120 78 YRGLPKKPSAFLQ---QTVARFEKYLGEFRQ 105 (346)
Q Consensus 78 ys~~p~~Ps~YF~---qlV~~FE~rL~~YRq 105 (346)
|+++-+.|-+ |. +-++.|++.|....+
T Consensus 46 ~~~v~~~~~e-F~Emkey~d~L~~~L~~iek 75 (243)
T cd07666 46 VRGVKNRPEE-FTEMNEYVEAFSQKINVLDK 75 (243)
T ss_pred ccccCCCCHH-HHHHHHHHHHHHHHhhhhHH
Confidence 3335444444 43 335556655554444
No 354
>smart00150 SPEC Spectrin repeats.
Probab=31.47 E-value=2.2e+02 Score=21.16 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019120 93 VARFEKYLGEFRQWIEELEQL 113 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~ 113 (346)
...|++.|..++..|+.+...
T Consensus 40 ~~~~~~e~~~~~~~v~~~~~~ 60 (101)
T smart00150 40 HEALEAELEAHEERVEALNEL 60 (101)
T ss_pred HHHHHHHHHHhHHHHHHHHHH
Confidence 455666666666666666554
No 355
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=31.42 E-value=2.6e+02 Score=32.81 Aligned_cols=11 Identities=27% Similarity=0.468 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 019120 103 FRQWIEELEQL 113 (346)
Q Consensus 103 YRqqIEELE~~ 113 (346)
|+++|++++..
T Consensus 377 l~k~I~~~~~~ 387 (1074)
T KOG0250|consen 377 LEKQIADLEKQ 387 (1074)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 356
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=31.12 E-value=2.4e+02 Score=21.52 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Q 019120 94 ARFEKYLGEFRQWIEELEQLILLD 117 (346)
Q Consensus 94 ~~FE~rL~~YRqqIEELE~~L~s~ 117 (346)
.++++-+..|.+-||.|.+.+...
T Consensus 20 g~~~~Al~~Y~~a~e~l~~~~~~~ 43 (75)
T cd02656 20 GNYEEALELYKEALDYLLQALKAE 43 (75)
T ss_pred CCHHHHHHHHHHHHHHHHHHhccC
Confidence 458899999999999999888644
No 357
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=31.05 E-value=2e+02 Score=30.56 Aligned_cols=84 Identities=14% Similarity=0.201 Sum_probs=50.6
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC------CCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 83 KKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDR------NSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQ 156 (346)
Q Consensus 83 ~~Ps~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~------~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe 156 (346)
..=-|++.+-+.+.++++..|.+.++|+.+.....-.+ ..+=.|...-.+|...+..+=..|-.++..+ .
T Consensus 123 ~YeIP~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~lGI~G~nir~ELl~l~~~LP~~~~~i~~~i----~ 198 (507)
T PF05600_consen 123 NYEIPALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKKACKQLGIKGENIREELLELVKELPSLFDEIVEAI----S 198 (507)
T ss_pred cccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHHhhHHHHHHHHHHH----H
Confidence 34446777777777777777777777766644421110 0000011234567777777778887776666 3
Q ss_pred HHHHHHHHHHHHHH
Q 019120 157 YVETMKTAYLADQR 170 (346)
Q Consensus 157 ~Ve~lKe~YL~~~R 170 (346)
.|+..-|.|.+.+.
T Consensus 199 ~l~~aie~Y~~f~~ 212 (507)
T PF05600_consen 199 DLQEAIEYYQAFVE 212 (507)
T ss_pred HHHHHHHHHHHHHH
Confidence 37777777877777
No 358
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=31.01 E-value=79 Score=28.58 Aligned_cols=30 Identities=30% Similarity=0.362 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 86 SAFLQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 86 s~YF~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
.+.|.+.+++|+++.++|++.-||||+.-.
T Consensus 68 ~~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~ 97 (157)
T PF14235_consen 68 RAAYQKKIARYKKEKARYKSEAEELEAKAK 97 (157)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999999999999866
No 359
>COG5314 Conjugal transfer/entry exclusion protein [Intracellular trafficking and secretion]
Probab=30.75 E-value=5.4e+02 Score=25.50 Aligned_cols=76 Identities=14% Similarity=0.288 Sum_probs=44.2
Q ss_pred cccchhhccCCCCCccHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHH
Q 019120 71 VVPVFDFYRGLPKKPSAFLQ------QTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFF 144 (346)
Q Consensus 71 ~~pv~Dfys~~p~~Ps~YF~------qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~F 144 (346)
..+||| |+.|=+ +-++..|++++.|..|+..+.+.++.....+- .....|...|.++
T Consensus 33 a~~vfd--------pSN~~Qnilta~rsleqVnnQIqqlQnQaq~yqNmlqNta~l~~-----~iw~Ql~~~l~kl---- 95 (252)
T COG5314 33 ALIVFD--------PSNYAQNILTAVRSLEQVNNQIQQLQNQAQQYQNMLQNTAALPF-----YIWGQLSQVLNKL---- 95 (252)
T ss_pred ceeeec--------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh-----HHHHHHHHHHHHH----
Confidence 347877 455654 44678888999999999888888884432111 2234444444433
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019120 145 VHVAAKAESIHQYVETMKT 163 (346)
Q Consensus 145 vaLAArva~LHe~Ve~lKe 163 (346)
+.+=+++..+.-.|+.+-+
T Consensus 96 ~~l~d~aqg~afdvg~iD~ 114 (252)
T COG5314 96 QNLQDQAQGYAFDVGSIDD 114 (252)
T ss_pred HHHHHHHhHHHhhhhhHHH
Confidence 3333444555555555543
No 360
>PRK10093 primosomal replication protein N''; Provisional
Probab=30.70 E-value=77 Score=29.48 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
.++-+.-+|.||..||+-|..||+.+.
T Consensus 141 lq~el~alegRL~RCrqAl~~IE~~Ie 167 (171)
T PRK10093 141 LHREVEAYEGRLARCRHALEKIENVLA 167 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778899999999999999999875
No 361
>PF13166 AAA_13: AAA domain
Probab=30.67 E-value=5e+02 Score=27.69 Aligned_cols=29 Identities=10% Similarity=0.218 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLILL 116 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~s 116 (346)
.|+..+.+++..+..++..|+.+...|..
T Consensus 319 ~~~~~~~~~~~~~~~l~~~l~~l~~~L~~ 347 (712)
T PF13166_consen 319 EFEEDKEELKSAIEALKEELEELKKALEK 347 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667888999999999998888887773
No 362
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=30.56 E-value=2.4e+02 Score=23.76 Aligned_cols=63 Identities=14% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 019120 95 RFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVH-VAAKAESIHQYVETMKTAY 165 (346)
Q Consensus 95 ~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~Fva-LAArva~LHe~Ve~lKe~Y 165 (346)
+|++++..+...+++|+..|..... ..-..|...+..+.+.+-. +......|.++++++++..
T Consensus 2 ~l~~~~~~l~~~~~~l~~~l~~~~~--------~~~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~i 65 (202)
T PF01442_consen 2 KLDDRLDSLSSRTEELEERLEELSD--------EIADRLAEEIEALSERLESELEELSDRLEERLDEVKERI 65 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHCHCSCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 363
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=30.42 E-value=1.3e+02 Score=34.17 Aligned_cols=37 Identities=22% Similarity=0.397 Sum_probs=25.9
Q ss_pred HHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHH
Q 019120 106 WIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAK 150 (346)
Q Consensus 106 qIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAAr 150 (346)
.||.||+.|.+-++ +...-|.++|++++++|-.|+.+
T Consensus 867 ~vd~i~kel~Lp~~--------Q~~all~k~~kk~~~~~~~v~~~ 903 (1011)
T KOG2036|consen 867 SVDAIEKELNLPSN--------QLLALLTKAMKKLSKYFDEVEEK 903 (1011)
T ss_pred CHHHHHHHhcCChh--------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777665543 34556778889999999888543
No 364
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=30.40 E-value=6.3e+02 Score=29.11 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
+.+.++.|++.+..++..++++++.|.
T Consensus 782 l~~~i~~~~~~~~~~~~~~~~~~~~l~ 808 (1047)
T PRK10246 782 LEQLKQNLENQRQQAQTLVTQTAQALA 808 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888887777766555
No 365
>PRK00846 hypothetical protein; Provisional
Probab=30.39 E-value=3e+02 Score=22.48 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 019120 93 VARFEKYLGEFRQWIEELEQLI 114 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L 114 (346)
+.++|.++..-...||+|-+.|
T Consensus 15 i~~LE~rlAfQe~tIe~LN~~v 36 (77)
T PRK00846 15 LVELETRLSFQEQALTELSEAL 36 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 366
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=30.36 E-value=2.8e+02 Score=22.00 Aligned_cols=55 Identities=20% Similarity=0.302 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHH
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA 148 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLA 148 (346)
+.+++++.++.+...+.+++++-..+...-. +. ....+++...++++...|-+++
T Consensus 24 l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~-~~----n~l~~dv~~k~~~v~~~~~~v~ 78 (90)
T PF06103_consen 24 LKKTLDEVNKTIDTLQEQVDPITKEINDLLH-NT----NELLEDVNEKLEKVDPVFEAVA 78 (90)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HH----HHHHHHHHHHHHhHHHHHHHHH
Confidence 3566677777777777766665554441110 00 0234566677777776666553
No 367
>PRK10869 recombination and repair protein; Provisional
Probab=30.12 E-value=6.9e+02 Score=26.70 Aligned_cols=112 Identities=15% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHhhhccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhccCCCCCc
Q 019120 6 AQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLHPNAGSASSATAPSQASGATAAPSSTGQPASSSVVPVFDFYRGLPKKP 85 (346)
Q Consensus 6 ~~~~~l~~~V~~~lrntE~Avrs~~~lr~rf~~~~~~~~~~~~~~~~~~g~~~~~~~~~qp~~~~~~pv~Dfys~~p~~P 85 (346)
..+.++-+.+.+..-+.|.+.+.+. ++.... -+|-.+
T Consensus 261 ~~~~~~~~~l~~~~~~l~~~~~~l~----~~~~~~---------------------------------~~dp~~------ 297 (553)
T PRK10869 261 SKLSGVLDMLEEALIQIQEASDELR----HYLDRL---------------------------------DLDPNR------ 297 (553)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH----HHHhhc---------------------------------CCCHHH------
Q ss_pred cHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHH
Q 019120 86 SAFLQQTVARFEKYLGEFRQ--------------WIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKA 151 (346)
Q Consensus 86 s~YF~qlV~~FE~rL~~YRq--------------qIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArv 151 (346)
+++.|+||..++. ..+++++.|....+.... .+.|...+..+++-+..+|.+|
T Consensus 298 -------l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~------l~~Le~e~~~l~~~l~~~A~~L 364 (553)
T PRK10869 298 -------LAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDD------LETLALAVEKHHQQALETAQKL 364 (553)
T ss_pred -------HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH-HHHHHHHHHHHHHhcC
Q 019120 152 ESIHQY-VETMKTAYLADQRRRG 173 (346)
Q Consensus 152 a~LHe~-Ve~lKe~YL~~~Rr~G 173 (346)
...-.+ .+.+.+.-.+.-+.+|
T Consensus 365 S~~R~~aA~~l~~~v~~~L~~L~ 387 (553)
T PRK10869 365 HQSRQRYAKELAQLITESMHELS 387 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
No 368
>PRK00708 sec-independent translocase; Provisional
Probab=30.12 E-value=2.8e+02 Score=26.64 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019120 88 FLQQTVARFEKYLGEFRQWIEE 109 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEE 109 (346)
.+-+.|.+|-.....++++|+|
T Consensus 31 ~lGk~v~k~R~~a~e~r~~~~e 52 (209)
T PRK00708 31 AFGKMTARMRKMAGEFRRQFDE 52 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554
No 369
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=30.03 E-value=3e+02 Score=24.85 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 019120 94 ARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 94 ~~FE~rL~~YRqqIEELE~~L~ 115 (346)
.++++-+..|+..|++|++.+.
T Consensus 90 ~~~~eAie~l~k~~~~l~~~~~ 111 (145)
T COG1730 90 KSADEAIEFLKKRIEELEKAIE 111 (145)
T ss_pred ecHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888887765
No 370
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=30.03 E-value=1.7e+02 Score=28.83 Aligned_cols=23 Identities=4% Similarity=-0.022 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhhchHHHHHHhhh
Q 019120 9 QERMAVVKDMLRNTEIAVRSFMM 31 (346)
Q Consensus 9 ~~l~~~V~~~lrntE~Avrs~~~ 31 (346)
+-....++++.++++..-+.|.-
T Consensus 71 ely~~~c~EL~~~I~egr~~~~~ 93 (325)
T PF08317_consen 71 ELYQFSCRELKKYISEGRQIFEE 93 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345667777777777666653
No 371
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=30.00 E-value=2.5e+02 Score=28.32 Aligned_cols=23 Identities=35% Similarity=0.316 Sum_probs=13.2
Q ss_pred hcCCCCCccchhhHHHHHHHHHH
Q 019120 171 RRGDGSDPFLEADRRETARQEAA 193 (346)
Q Consensus 171 r~GD~~DPFaEadr~Eaa~q~~a 193 (346)
++.+..||=+..=|+..+++-+.
T Consensus 162 rLa~~~dp~l~~vR~Ala~Di~~ 184 (372)
T PF04375_consen 162 RLAELDDPSLLPVRQALAQDIAA 184 (372)
T ss_pred HHHhcCCcchHHHHHHHHHHHHH
Confidence 34444677666656666655554
No 372
>PF13040 DUF3901: Protein of unknown function (DUF3901)
Probab=30.00 E-value=79 Score=22.99 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLI 114 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L 114 (346)
|.+||.+-.++|..=+..||+||.-|
T Consensus 8 FeeLV~eNK~ell~d~~~me~Ieeri 33 (40)
T PF13040_consen 8 FEELVRENKQELLNDKEAMEKIEERI 33 (40)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 78899999999988888999998765
No 373
>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....
Probab=30.00 E-value=2e+02 Score=21.30 Aligned_cols=18 Identities=6% Similarity=-0.008 Sum_probs=10.0
Q ss_pred cccHHHHHHHHHHHHHHH
Q 019120 130 LQSLPQVISNVHIFFVHV 147 (346)
Q Consensus 130 pQ~L~~~L~~~hq~FvaL 147 (346)
+..|...+++++-..-.+
T Consensus 29 ~~~l~~~~H~lkG~a~~~ 46 (90)
T PF01627_consen 29 WEELRRLAHRLKGSAGNL 46 (90)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhHHhc
Confidence 455566666666555443
No 374
>PRK14140 heat shock protein GrpE; Provisional
Probab=29.88 E-value=4e+02 Score=25.05 Aligned_cols=80 Identities=20% Similarity=0.218 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 019120 90 QQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHV--AAKAESIHQYVETMKTAYLA 167 (346)
Q Consensus 90 ~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaL--AArva~LHe~Ve~lKe~YL~ 167 (346)
.++..+||+.-.+.++.++++...-. ...+.+|-.++.++-...-+. ...+..|.+.|+.....+++
T Consensus 61 lR~~Ae~eN~rkR~~rE~~~~~~~a~-----------~~~~~~LLpvlDnLerAl~~~~~~~~~~~i~~Gv~mi~k~l~~ 129 (191)
T PRK14140 61 LRLQADFENYKRRIQKENEAAEKYRA-----------QSLASDLLPALDNFERALQIEADDEQTKSLLKGVEMVHRQLLE 129 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHH
Confidence 44455555555555554444433321 012344445555554443321 12246677778888888887
Q ss_pred HHHhcC-----CCCCccc
Q 019120 168 DQRRRG-----DGSDPFL 180 (346)
Q Consensus 168 ~~Rr~G-----D~~DPFa 180 (346)
.-.++| -..+||+
T Consensus 130 ~L~k~GV~~i~~~Ge~FD 147 (191)
T PRK14140 130 ALKKEGVEVIEAVGEQFD 147 (191)
T ss_pred HHHHCCCEeeCCCCCCCC
Confidence 665433 3456773
No 375
>PLN02381 valyl-tRNA synthetase
Probab=29.88 E-value=2.6e+02 Score=32.39 Aligned_cols=66 Identities=8% Similarity=0.103 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKT 163 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe 163 (346)
+..-+.+++++|+...++|+.+|+.|...+= .. -.|.+ +++.-.+-...+-.+++.|.+.+.++++
T Consensus 995 ~~~E~~rL~K~l~klekei~~~~~kLsN~~F--~~----KAP~~---vve~e~~kl~~~~~~l~~l~~~l~~l~~ 1060 (1066)
T PLN02381 995 AEAELEKLRNKMDEIQKQQEKLEKKMNASGY--KE----KVPAN---IQEEDARKLTKLLQELEFFEKESKRLEA 1060 (1066)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCch--hh----cCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888888887663220 00 12333 3333333333444456666666665543
No 376
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=29.78 E-value=3e+02 Score=26.39 Aligned_cols=71 Identities=14% Similarity=0.162 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCCCCC----------ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 93 VARFEKYLGEFRQWIEELEQLIL-LDPDRNSSSHG----------SSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETM 161 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~-s~s~~~~S~~g----------s~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~l 161 (346)
...||.++..++..++++|..-. +...++.. -- ......+...+..+++.-..|=.++..|+.+|.++
T Consensus 54 ~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~-LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~ 132 (225)
T COG1842 54 QKQLERKLEEAQARAEKLEEKAELALQAGNED-LAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAEL 132 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888655 22211100 00 01122334555666666666666677777777666
Q ss_pred HHH
Q 019120 162 KTA 164 (346)
Q Consensus 162 Ke~ 164 (346)
|..
T Consensus 133 ~~~ 135 (225)
T COG1842 133 RAK 135 (225)
T ss_pred HHH
Confidence 654
No 377
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=29.66 E-value=86 Score=27.37 Aligned_cols=29 Identities=10% Similarity=0.349 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 019120 90 QQTVARFEKYLGEFRQWIEELEQLILLDP 118 (346)
Q Consensus 90 ~qlV~~FE~rL~~YRqqIEELE~~L~s~s 118 (346)
.+++++.+++|....+.|.+||+++.+.+
T Consensus 83 ~~~l~~~~~~~~~~e~Rl~~mE~yVTS~~ 111 (121)
T TIGR02978 83 RQALREVKREFRDLERRLRNMERYVTSDT 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45788899999999999999999988543
No 378
>PRK14159 heat shock protein GrpE; Provisional
Probab=29.60 E-value=3.1e+02 Score=25.43 Aligned_cols=81 Identities=14% Similarity=0.099 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA--AKAESIHQYVETMKTAY 165 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLA--Arva~LHe~Ve~lKe~Y 165 (346)
-+.++..+||++-.+..+.++++...-.. ....+|-.++.++-...-+.. ..+..|++.|+....++
T Consensus 45 ~~lR~~AdfeN~rkR~~rE~e~~~~~a~~-----------~~~~~LLpV~DnlerAl~~~~~~~~~~~l~~Gv~mi~k~l 113 (176)
T PRK14159 45 KYMRANAEFENIKKRMEKEKLSAMAYANE-----------SFAKDLLDVLDALEAAVNVECHDEISLKIKEGVQNTLDLF 113 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhHHhHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 45678888998888888888877665331 123455555555555543221 23456888899999999
Q ss_pred HHHHHhcC----CCCCcc
Q 019120 166 LADQRRRG----DGSDPF 179 (346)
Q Consensus 166 L~~~Rr~G----D~~DPF 179 (346)
++.-.++| +...+|
T Consensus 114 ~~vL~k~Gv~~I~~~G~F 131 (176)
T PRK14159 114 LKKLEKHGVALIKEEKEF 131 (176)
T ss_pred HHHHHHCcCEecCCCCCC
Confidence 88776544 344567
No 379
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=29.35 E-value=3.8e+02 Score=28.58 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 92 TVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 92 lV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
.+..|+++|.....+.+.++..+.
T Consensus 345 ~~~~l~~~l~~l~~~~~~~~~~i~ 368 (560)
T PF06160_consen 345 IVRELEKQLKELEKRYEDLEERIE 368 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666655
No 380
>KOG3221 consensus Glycolipid transfer protein [Carbohydrate transport and metabolism]
Probab=29.28 E-value=1.4e+02 Score=28.64 Aligned_cols=24 Identities=13% Similarity=0.027 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 146 HVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 146 aLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
+|+++ ...|+.+.+-.+.|+...+
T Consensus 156 als~~-d~t~~~~~edi~~fl~~~~ 179 (199)
T KOG3221|consen 156 ALSAG-DETYDECIEDITSFLSLLT 179 (199)
T ss_pred HHhcc-cchHHHHHHHHHHHHHHHH
Confidence 45555 6777777777777776555
No 381
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=29.27 E-value=2.6e+02 Score=28.68 Aligned_cols=81 Identities=10% Similarity=0.164 Sum_probs=54.0
Q ss_pred cchhhccCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHH
Q 019120 73 PVFDFYRGLPKKP-SAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKA 151 (346)
Q Consensus 73 pv~Dfys~~p~~P-s~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArv 151 (346)
.+..||..+.... +| |++-++.+.+.|...+.++++|++...-.-. .. ......|...|......+-+|.+-+
T Consensus 265 di~~YYl~C~~~~~nP-Fqq~l~~~~~al~~~q~~~~~L~~~a~~~fp--~~---~~~l~~i~~~Ln~~e~~l~~l~all 338 (406)
T PF04906_consen 265 DILQYYLTCSQSVSNP-FQQRLTSSQRALSNMQSQVQGLLREAVPLFP--TA---QEPLLAIQEDLNSTERSLHQLTALL 338 (406)
T ss_pred hHHHHhhcCCCCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--Cc---cchHHHHHHHHHHHHHHHHHHHhhc
Confidence 5788999987765 45 5667888999999999999999996552211 11 0225566666666666666666655
Q ss_pred H--HHHHHHH
Q 019120 152 E--SIHQYVE 159 (346)
Q Consensus 152 a--~LHe~Ve 159 (346)
. .||+...
T Consensus 339 dCr~lh~dY~ 348 (406)
T PF04906_consen 339 DCRGLHKDYV 348 (406)
T ss_pred ccccHHHHHH
Confidence 3 5665533
No 382
>PRK07701 flgL flagellar hook-associated protein FlgL; Validated
Probab=29.15 E-value=2.4e+02 Score=27.02 Aligned_cols=67 Identities=12% Similarity=0.140 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Q 019120 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA------AKAESIHQYVETMKTAYL 166 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLA------Arva~LHe~Ve~lKe~YL 166 (346)
+..-..++..|.+.|++....|.... ..++.|...|.++.+..+..+ ...+.|.++++.++++.+
T Consensus 52 l~~~~~~~~~~~~n~~~~~~~l~~~e---------~~L~~i~~~l~~~r~~~v~a~n~t~s~~~~~~~a~e~~~l~~~l~ 122 (298)
T PRK07701 52 YRTDLAEVEQYQKNASDAKSWLENTE---------SALDQATDILQRARELAVQAANGTNTQTDRQAIAQEIEQLKEQLI 122 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34444566677777777777777443 247888999999999887654 256677777777777655
Q ss_pred HH
Q 019120 167 AD 168 (346)
Q Consensus 167 ~~ 168 (346)
..
T Consensus 123 ~~ 124 (298)
T PRK07701 123 QI 124 (298)
T ss_pred HH
Confidence 43
No 383
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=29.13 E-value=2.1e+02 Score=31.35 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 019120 91 QTVARFEKYLGEFRQWIEELEQLILLD 117 (346)
Q Consensus 91 qlV~~FE~rL~~YRqqIEELE~~L~s~ 117 (346)
++++-+++||...++++++.|+.|...
T Consensus 267 ~a~~fL~~qL~~l~~~L~~aE~~l~~f 293 (726)
T PRK09841 267 QSLEFLQRQLPEVRSELDQAEEKLNVY 293 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345557788888888888888888733
No 384
>PF07996 T4SS: Type IV secretion system proteins; InterPro: IPR014158 This entry contains VirB5, a protein that is involved in the type IV DNA secretion systems typified by the Agrobacterium Ti plasmid vir system where it interacts with several other proteins essential for proper pilus formation []. VirB5 is homologous to the IncN (N-type) conjugation system protein TraC [] as well as the P-type protein TrbJ and the F-type protein TraE [].; PDB: 1R8I_A.
Probab=29.05 E-value=91 Score=27.81 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 019120 90 QQTVARFEKYLGEFRQWIEELEQLILLDP 118 (346)
Q Consensus 90 ~qlV~~FE~rL~~YRqqIEELE~~L~s~s 118 (346)
.+-|.++.+++..|++||+++++.+.+..
T Consensus 18 ~~q~~~~~~q~~q~~~Ql~~~k~q~~s~t 46 (195)
T PF07996_consen 18 AQQLAQWKQQLEQLKQQLQQAKQQYNSLT 46 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56688899999999999999999988433
No 385
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=29.05 E-value=1.6e+02 Score=24.78 Aligned_cols=38 Identities=5% Similarity=0.191 Sum_probs=21.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 019120 132 SLPQVISNVHIFFVHVAAKAESIHQYVETMKT--AYLADQ 169 (346)
Q Consensus 132 ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe--~YL~~~ 169 (346)
.+..-+..+++-.-.|-.+-+.|+++|+.+|+ .|++.+
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~ 70 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEER 70 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHH
Confidence 33444444444444555566667777777766 466644
No 386
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=28.95 E-value=1.8e+02 Score=24.84 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
+.....++++++..|...|++++..+.
T Consensus 6 Lk~~~~~L~~~~~~le~~i~~~~~~~k 32 (171)
T PF03357_consen 6 LKKTIRRLEKQIKRLEKKIKKLEKKAK 32 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999988877
No 387
>PRK08412 flgL flagellar hook-associated protein FlgL; Validated
Probab=28.81 E-value=2.1e+02 Score=32.57 Aligned_cols=68 Identities=13% Similarity=0.115 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Q 019120 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA------AKAESIHQYVETMKTAYL 166 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLA------Arva~LHe~Ve~lKe~YL 166 (346)
++.-..++.+|++.|.+.+..|.... ..+..+..+|+++.+..|+.+ ...+.|.++++.++++.+
T Consensus 52 L~sel~~l~Qy~~Nis~A~s~L~~aD---------tALssI~diLqr~RellVqAaNgT~S~~dR~AIA~El~~LleqLv 122 (827)
T PRK08412 52 LQYEENTLDQGIDVASSAYTFTLNTD---------KALNEFSKTMEAFKTKLIQAANDVHSETSREAIANDLEALKEHMI 122 (827)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34444667778888888888777332 348889999999999888765 446788888999988866
Q ss_pred HHH
Q 019120 167 ADQ 169 (346)
Q Consensus 167 ~~~ 169 (346)
..-
T Consensus 123 ~iA 125 (827)
T PRK08412 123 NLA 125 (827)
T ss_pred HHh
Confidence 644
No 388
>PRK06819 flagellin; Validated
Probab=28.80 E-value=1.4e+02 Score=30.69 Aligned_cols=83 Identities=13% Similarity=0.137 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Q 019120 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA------AKAESIHQYVETMKTAYL 166 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLA------Arva~LHe~Ve~lKe~YL 166 (346)
+.+|+.++..|.+-+.-+...+...... ...++.|..+|+++.+.-|+.+ ...+.|.++|+.++++..
T Consensus 51 a~~l~aqi~~l~qa~~N~~dgis~Lqta------e~aL~~i~~iLqR~reLavqAaNgT~s~~dR~ai~~Ei~qL~~qI~ 124 (376)
T PRK06819 51 ANRFTSNIKGLTQAARNANDGISIAQTT------EGALNEINNNLQRVRELTVQAQNGSNSSSDLDSIQDEISQRLAEID 124 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6777777777666666665554422110 1247899999999999999875 377889999999999877
Q ss_pred HHHH-hcCCCCCccch
Q 019120 167 ADQR-RRGDGSDPFLE 181 (346)
Q Consensus 167 ~~~R-r~GD~~DPFaE 181 (346)
..-. ..-+.+..|..
T Consensus 125 ~ian~t~fnG~~LfsG 140 (376)
T PRK06819 125 RVSDQTQFNGVKVLAE 140 (376)
T ss_pred HHHHhCCcCCeeeecC
Confidence 7554 34455666643
No 389
>PRK09343 prefoldin subunit beta; Provisional
Probab=28.75 E-value=1.1e+02 Score=26.25 Aligned_cols=25 Identities=8% Similarity=-0.039 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 91 QTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 91 qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
+++.++++|+..|...|+.||+...
T Consensus 71 e~~~~l~~r~E~ie~~ik~lekq~~ 95 (121)
T PRK09343 71 KVEKELKERKELLELRSRTLEKQEK 95 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555543
No 390
>COG5384 Mpp10 U3 small nucleolar ribonucleoprotein component [Translation, ribosomal structure and biogenesis]
Probab=28.72 E-value=53 Score=34.79 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 019120 93 VARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~ 115 (346)
+..||++-.+.++||||||+.+-
T Consensus 274 LSS~Ek~q~~m~eqIeeLE~e~V 296 (569)
T COG5384 274 LSSFEKQQIEMDEQIEELEKELV 296 (569)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhc
Confidence 56799999999999999999765
No 391
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.62 E-value=2.8e+02 Score=27.10 Aligned_cols=73 Identities=7% Similarity=0.113 Sum_probs=53.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 86 SAFLQQTVARFEKYLGEFRQWIEE-LEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTA 164 (346)
Q Consensus 86 s~YF~qlV~~FE~rL~~YRqqIEE-LE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~ 164 (346)
.+=+.+=++++|+++..||-+.++ +=.+|...- ..+..|...++.|-+|.-.-+.-|+.|...|+.+-+.
T Consensus 164 ~e~lr~e~E~ae~~~e~~kd~~~~~m~~~l~~e~---------e~~~~l~~Lv~AQleYHr~A~eiLe~l~~~i~~~~~~ 234 (248)
T cd07619 164 ADALREEMEEAANRMEICRDQLSADMYSFVAKEI---------DYANYFQTLIEVQAEYHRKSLELLQSVLPQIKAHQEA 234 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666789999999999876544 333333222 2244588999999999999999999999999888777
Q ss_pred HHH
Q 019120 165 YLA 167 (346)
Q Consensus 165 YL~ 167 (346)
|-+
T Consensus 235 ~~~ 237 (248)
T cd07619 235 WVE 237 (248)
T ss_pred ccc
Confidence 654
No 392
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=28.61 E-value=5e+02 Score=24.38 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 144 FVHVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 144 FvaLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
...|--++..|-+.|...|+.|....+
T Consensus 199 v~~Le~~id~le~eL~~~k~~~~~~~~ 225 (237)
T PF00261_consen 199 VKKLEKEIDRLEDELEKEKEKYKKVQE 225 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666667777777766655
No 393
>PF05289 BLYB: Borrelia hemolysin accessory protein; InterPro: IPR007953 This entry represents the borrelial prophage-encoded protein BlyB. Originally BlyB and its partner, the membrane-bound protein BlyA, were thought to comprise a haemolysis system. It is now thought, however, that BlyA and BlyB function instead as a holin or holin-like system [].
Probab=28.60 E-value=3.1e+02 Score=23.86 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
|.-+.+=|..++-.|++.||-||..+.
T Consensus 37 f~Lv~~LYs~y~~IYk~nmerlE~~~t 63 (105)
T PF05289_consen 37 FFLVYDLYSHYTLIYKSNMERLENALT 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445677789999999999999998754
No 394
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=28.58 E-value=4.1e+02 Score=28.05 Aligned_cols=29 Identities=28% Similarity=0.189 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 87 AFLQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 87 ~YF~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
+=...+|.++|.+|..-+.++.+|...+.
T Consensus 282 ~~~~~lI~~Le~qLa~~~aeL~~L~~~~~ 310 (434)
T PRK15178 282 TAIYQLIAGFETQLAEAKAEYAQLMVNGL 310 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34467799999999998888877766544
No 395
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=28.41 E-value=5.8e+02 Score=27.12 Aligned_cols=30 Identities=10% Similarity=-0.045 Sum_probs=24.7
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 128 SLLQSLPQVISNVHIFFVHVAAKAESIHQY 157 (346)
Q Consensus 128 ~tpQ~L~~~L~~~hq~FvaLAArva~LHe~ 157 (346)
.+++........++..|..|..++++=+++
T Consensus 188 ls~~~e~rl~~~~kkq~l~le~~l~eEy~r 217 (429)
T PF12297_consen 188 LSPQVEKRLSSVFKKQFLGLEKRLQEEYDR 217 (429)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557888888899999999999988865555
No 396
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=28.37 E-value=3e+02 Score=32.81 Aligned_cols=66 Identities=15% Similarity=0.025 Sum_probs=41.0
Q ss_pred HHHHhhchHHHHHHhhhccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhccCCCCCccHHHHHHHH
Q 019120 15 VKDMLRNTEIAVRSFMMLRPRFLHPNAGSASSATAPSQASGATAAPSSTGQPASSSVVPVFDFYRGLPKKPSAFLQQTVA 94 (346)
Q Consensus 15 V~~~lrntE~Avrs~~~lr~rf~~~~~~~~~~~~~~~~~~g~~~~~~~~~qp~~~~~~pv~Dfys~~p~~Ps~YF~qlV~ 94 (346)
.-++.-|.|.|+..|.+ -+.|+.++.-+. | + ..+-.=+..+.+
T Consensus 961 ~Ye~~GklekAl~a~~~--~~dWr~~l~~a~-------------------q------------l----~~~~de~~~~a~ 1003 (1265)
T KOG1920|consen 961 MYERCGKLEKALKAYKE--CGDWREALSLAA-------------------Q------------L----SEGKDELVILAE 1003 (1265)
T ss_pred HHHHhccHHHHHHHHHH--hccHHHHHHHHH-------------------h------------h----cCCHHHHHHHHH
Confidence 34677899999999997 678888742000 0 0 111223344467
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC
Q 019120 95 RFEKYLGEFRQWIEELEQLILLD 117 (346)
Q Consensus 95 ~FE~rL~~YRqqIEELE~~L~s~ 117 (346)
++-.+|.+-++.+|--+-++...
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHh
Confidence 77777777777777665555533
No 397
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=28.35 E-value=5.6e+02 Score=27.64 Aligned_cols=6 Identities=17% Similarity=0.379 Sum_probs=3.4
Q ss_pred ccccHH
Q 019120 129 LLQSLP 134 (346)
Q Consensus 129 tpQ~L~ 134 (346)
+|.||.
T Consensus 233 ~prdia 238 (552)
T KOG2129|consen 233 LPRDIA 238 (552)
T ss_pred chhhhh
Confidence 455655
No 398
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.30 E-value=3.3e+02 Score=22.26 Aligned_cols=19 Identities=37% Similarity=0.281 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019120 94 ARFEKYLGEFRQWIEELEQ 112 (346)
Q Consensus 94 ~~FE~rL~~YRqqIEELE~ 112 (346)
.++|.|+..=.+.||||-.
T Consensus 11 ~eLE~r~AfQE~tieeLn~ 29 (72)
T COG2900 11 IELEIRLAFQEQTIEELND 29 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 399
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=28.27 E-value=3.3e+02 Score=24.16 Aligned_cols=29 Identities=34% Similarity=0.258 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 019120 91 QTVARFEKYLGEFRQWIEELEQLILLDPD 119 (346)
Q Consensus 91 qlV~~FE~rL~~YRqqIEELE~~L~s~s~ 119 (346)
+|-+.|++.+.+-++||+-||+++...+.
T Consensus 35 ~L~~~l~~h~~eT~~q~~rLe~~~~~lg~ 63 (159)
T PF05974_consen 35 ELKAALEEHLEETEQQIERLEQIFEALGA 63 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 45778999999999999999999997765
No 400
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=28.25 E-value=4.8e+02 Score=27.40 Aligned_cols=55 Identities=24% Similarity=0.206 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhhHHHHHH
Q 019120 135 QVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFLEADRRETAR 189 (346)
Q Consensus 135 ~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~Rr~GD~~DPFaEadr~Eaa~ 189 (346)
.-+...-++.+.||++==.+...|+..-..--....++-+.+||=+-+-|+-.+.
T Consensus 130 dWllaEad~Ll~lA~rkL~l~~DV~TAv~lLk~aD~~La~~NdP~l~~~R~Aia~ 184 (391)
T COG2959 130 DWLLAEADFLLKLAGRKLVLDQDVTTAVALLKSADARLAAMNDPSLIAVRRAIAN 184 (391)
T ss_pred hHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 4455667888888887655555555554443334445556667765555554443
No 401
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=28.20 E-value=3.6e+02 Score=22.59 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLILLDP 118 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~s~s 118 (346)
|..+-..||+...+...++++|-..+...+
T Consensus 29 f~~lh~~l~e~~~~~~~~~D~lAERi~~lg 58 (139)
T cd01043 29 FFALHELFEELYDELREAIDEIAERIRALG 58 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 556678888889999999999855555444
No 402
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=28.16 E-value=2.8e+02 Score=21.33 Aligned_cols=62 Identities=23% Similarity=0.248 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 90 QQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMK 162 (346)
Q Consensus 90 ~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lK 162 (346)
..-+++++.+|..=.+..|-+|+.+..+... .. . ..+.....-+.....+++.|+..|++++
T Consensus 8 ~~~l~~L~~~l~~E~~~r~Gaenm~~~~~~~-~~------~----~~~~~~~~~l~es~~ki~~Lr~~L~k~~ 69 (72)
T cd00089 8 QSRLERLEKELSIELKVKEGAENLLRLYSDE-KK------K----KLLAEAEQMLRESKQKLELLKMQLEKLK 69 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC------c----cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888999988888889999988866641 11 1 2333444444555667777777776654
No 403
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=28.13 E-value=3.9e+02 Score=26.96 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=19.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 131 QSLPQVISNVHIFFVHVAAKAESIHQYV 158 (346)
Q Consensus 131 Q~L~~~L~~~hq~FvaLAArva~LHe~V 158 (346)
..|....+.+|+=...||-+.+.+|+++
T Consensus 168 ~~lk~~~~e~~eki~~la~eaqe~he~m 195 (294)
T COG1340 168 DELKKKAREIHEKIQELANEAQEYHEEM 195 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777664
No 404
>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....
Probab=28.10 E-value=1.5e+02 Score=21.90 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019120 88 FLQQTVARFEKYLGEFRQWI 107 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqI 107 (346)
++...+++.++++...++.+
T Consensus 2 ll~~f~~~~~~~~~~l~~~~ 21 (90)
T PF01627_consen 2 LLDIFLEEAPEDLEQLEQAL 21 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555544
No 405
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=27.88 E-value=5.1e+02 Score=26.45 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 019120 90 QQTVARFEKYLGEFRQWIEELEQLILLD 117 (346)
Q Consensus 90 ~qlV~~FE~rL~~YRqqIEELE~~L~s~ 117 (346)
++=..++|+.-..|++.+||++++....
T Consensus 10 ~~efq~Lqethr~Y~qKleel~~lQ~~C 37 (330)
T PF07851_consen 10 QKEFQELQETHRSYKQKLEELSKLQDKC 37 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788888999999999987733
No 406
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=27.83 E-value=95 Score=30.17 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 87 AFLQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 87 ~YF~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
...++-|..+|+.-+.+|.+||+|++.|.
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~ 246 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELA 246 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777777655
No 407
>PRK06008 flgL flagellar hook-associated protein FlgL; Validated
Probab=27.76 E-value=2.1e+02 Score=28.36 Aligned_cols=67 Identities=10% Similarity=0.051 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 019120 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHV---AAKAESIHQYVETMKTAYLAD 168 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaL---AArva~LHe~Ve~lKe~YL~~ 168 (346)
+++=..++++|.+.|.+++..|.... ..+..+...|+++.+..+.. ....+.|-++++.++++.+..
T Consensus 55 l~~~~~~~~qy~~n~~~a~~~l~~~~---------~aL~~v~~~~~~~~~~l~~~~~~~~~~~aia~e~~~~~~~l~~~ 124 (348)
T PRK06008 55 LRREYDRLASLTDSNSLVTQRLTATQ---------TALGQIIEAAQSFLNDLLAANSSAQTAATVAQSARSALSSLTST 124 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHH
Confidence 44555667778888888888877443 34777888888888876631 124456666667777766554
No 408
>PRK14160 heat shock protein GrpE; Provisional
Probab=27.74 E-value=3e+02 Score=26.29 Aligned_cols=42 Identities=10% Similarity=0.105 Sum_probs=23.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019120 130 LQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRR 171 (346)
Q Consensus 130 pQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~Rr 171 (346)
...|..-+..+.+-...+-.+++.+.+++-+++..|=|+|||
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR 97 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKR 97 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555655555555566666654
No 409
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=27.72 E-value=3.5e+02 Score=29.50 Aligned_cols=36 Identities=8% Similarity=0.050 Sum_probs=19.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 132 SLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLA 167 (346)
Q Consensus 132 ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~ 167 (346)
++...++.+.+..-.+.+||+.|..++++...++-.
T Consensus 368 e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~ 403 (656)
T PRK06975 368 ELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQA 403 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555556666666666655555544433
No 410
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=27.63 E-value=3.8e+02 Score=28.82 Aligned_cols=23 Identities=4% Similarity=0.020 Sum_probs=11.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Q 019120 131 QSLPQVISNVHIFFVHVAAKAES 153 (346)
Q Consensus 131 Q~L~~~L~~~hq~FvaLAArva~ 153 (346)
..+...++.+.+.|....+.++.
T Consensus 240 e~a~~~l~~l~~~~~~~GG~~~~ 262 (650)
T TIGR03185 240 EEAQRSLESLEKKFRSEGGDLFE 262 (650)
T ss_pred HHHHHHHHHHHHHHHHhcchHHH
Confidence 34445555555555544444333
No 411
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=27.60 E-value=6.8e+02 Score=26.52 Aligned_cols=32 Identities=9% Similarity=0.236 Sum_probs=16.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 132 SLPQVISNVHIFFVHVAAKAESIHQYVETMKT 163 (346)
Q Consensus 132 ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe 163 (346)
.|...+......--.|...++.-..++++++.
T Consensus 200 kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~ 231 (420)
T COG4942 200 KLAQLLEERKKTLAQLNSELSADQKKLEELRA 231 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555554444443
No 412
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=27.57 E-value=8.5e+02 Score=26.72 Aligned_cols=28 Identities=14% Similarity=0.264 Sum_probs=19.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 130 LQSLPQVISNVHIFFVHVAAKAESIHQY 157 (346)
Q Consensus 130 pQ~L~~~L~~~hq~FvaLAArva~LHe~ 157 (346)
...|..-+..+++-++..|.+|..+-.+
T Consensus 344 ~~~Le~~~~~l~~~~~~~A~~Ls~~R~~ 371 (557)
T COG0497 344 LEALEKEVKKLKAELLEAAEALSAIRKK 371 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777666544
No 413
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=27.45 E-value=6.1e+02 Score=25.02 Aligned_cols=10 Identities=10% Similarity=0.235 Sum_probs=4.2
Q ss_pred HHhhchHHHH
Q 019120 17 DMLRNTEIAV 26 (346)
Q Consensus 17 ~~lrntE~Av 26 (346)
+++++.|.-+
T Consensus 89 ~~~~~~E~~~ 98 (325)
T PF08317_consen 89 QIFEEIEEET 98 (325)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 414
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=27.45 E-value=1.1e+02 Score=23.02 Aligned_cols=30 Identities=17% Similarity=0.299 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--hcCCCCCcc
Q 019120 150 KAESIHQYVETMKTAYLADQR--RRGDGSDPF 179 (346)
Q Consensus 150 rva~LHe~Ve~lKe~YL~~~R--r~GD~~DPF 179 (346)
-.++|.+++.++|..|.++|= ..|...||-
T Consensus 8 s~~eL~~~l~elk~eL~~Lr~q~~~~~l~n~~ 39 (58)
T PF00831_consen 8 SDEELQEKLEELKKELFNLRFQKATGQLENPH 39 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSSCCH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 357899999999999999774 678887776
No 415
>PRK02224 chromosome segregation protein; Provisional
Probab=27.44 E-value=3.6e+02 Score=29.65 Aligned_cols=17 Identities=35% Similarity=0.325 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 019120 98 KYLGEFRQWIEELEQLI 114 (346)
Q Consensus 98 ~rL~~YRqqIEELE~~L 114 (346)
++|...|.+|++||..+
T Consensus 627 ~~l~~~r~~i~~l~~~~ 643 (880)
T PRK02224 627 ERLAEKRERKRELEAEF 643 (880)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44555555555555443
No 416
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=27.38 E-value=6.3e+02 Score=25.12 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019120 150 KAESIHQYVETMKTAYLA 167 (346)
Q Consensus 150 rva~LHe~Ve~lKe~YL~ 167 (346)
++..+.++.+.++.+|..
T Consensus 107 ~l~~~~~e~~sl~~q~~~ 124 (314)
T PF04111_consen 107 ELIEFQEERDSLKNQYEY 124 (314)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444555555555443
No 417
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=27.26 E-value=1.6e+02 Score=30.59 Aligned_cols=23 Identities=13% Similarity=0.099 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 019120 93 VARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~ 115 (346)
.+.++.++..+..+|+.+|..|.
T Consensus 408 ~~~l~~~i~~l~~~i~~~~~rl~ 430 (462)
T PRK08032 408 TDGVNKTLKKLTKQYNAVSDSID 430 (462)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544
No 418
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=27.19 E-value=1.8e+02 Score=26.17 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 91 QTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 91 qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
..+.+++..+..-|.+||.||-...
T Consensus 30 ~R~~~lk~dik~~k~~~enledA~~ 54 (131)
T KOG1760|consen 30 SRKDDLKADIKEAKTEIENLEDASN 54 (131)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467788889999999999887543
No 419
>PRK10807 paraquat-inducible protein B; Provisional
Probab=27.16 E-value=3.7e+02 Score=28.81 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
+.+++++++.-|...++.++++++.+.
T Consensus 434 le~i~~~l~~tL~~~~~tl~~l~~~l~ 460 (547)
T PRK10807 434 LNPMIEQATSTLSESQRTMRELQTTLD 460 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666777777777664
No 420
>KOG3518 consensus Putative guanine nucleotide exchange factor [General function prediction only]
Probab=27.13 E-value=2.6e+02 Score=29.40 Aligned_cols=82 Identities=20% Similarity=0.242 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESI---HQYVETMKTA 164 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~L---He~Ve~lKe~ 164 (346)
|+.+-| +|+-.|.--+||||+||-.... |+.|- .+...|+..-.+|+++..- ||.++++-+.
T Consensus 253 yllkpv----qrilkyhlfle~i~k~l~~~th----------peel~-qvk~ahd~m~~qa~~indekkkaeh~erlgei 317 (521)
T KOG3518|consen 253 YLLKPV----QRILKYHLFLEEIEKHLDKDTH----------PEELD-QVKDAHDTMQRQAAHINDEKKKAEHAERLGEI 317 (521)
T ss_pred HHHHHH----HHHHHHHHHHHHHHhcCCCCCC----------hHHHH-HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 444445 5778899999999999885553 44443 3456678888888776433 3444554443
Q ss_pred --HHHHHHh-------cCCCCCccchhhH
Q 019120 165 --YLADQRR-------RGDGSDPFLEADR 184 (346)
Q Consensus 165 --YL~~~Rr-------~GD~~DPFaEadr 184 (346)
-|..|+. +-.+-|-.+|+-=
T Consensus 318 qs~lqkwkadeiqi~dlsaygdllleatf 346 (521)
T KOG3518|consen 318 QSLLQKWKADEIQIPDLSAYGDLLLEATF 346 (521)
T ss_pred HHHHHhcccccccCCchhhhHHHHHHHHH
Confidence 4556652 3344566666653
No 421
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=27.09 E-value=4e+02 Score=28.82 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=24.0
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 83 KKPSAFLQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 83 ~~Ps~YF~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
.-|..-|++++.++|+....-|.-|++--+.++
T Consensus 407 sspldlf~D~ivDlenmy~~~r~~~~~~~~~~q 439 (590)
T COG5104 407 SSPLDLFFDFIVDLENMYGFARRSYERETRTGQ 439 (590)
T ss_pred CChHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence 457889999999999988877766655333444
No 422
>PHA02562 46 endonuclease subunit; Provisional
Probab=27.04 E-value=1.3e+02 Score=30.75 Aligned_cols=28 Identities=18% Similarity=0.354 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
.+.+.+++++.++..+...|+++|..+.
T Consensus 303 ~l~d~i~~l~~~l~~l~~~i~~~~~~~~ 330 (562)
T PHA02562 303 KIKDKLKELQHSLEKLDTAIDELEEIMD 330 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777776666554
No 423
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=27.03 E-value=1.1e+02 Score=24.43 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 019120 95 RFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 95 ~FE~rL~~YRqqIEELE~~L~ 115 (346)
+++++|...+++|++|.++|+
T Consensus 69 ~l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 69 ELEEELAELRAELDELRARLR 89 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 467777777777777777664
No 424
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=26.94 E-value=2.7e+02 Score=26.71 Aligned_cols=61 Identities=7% Similarity=0.092 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVE 159 (346)
Q Consensus 94 ~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve 159 (346)
+++...+..|.++-|+.+..|...-+... .-..+|...++.|-+|+-.-+.-+..|+.+++
T Consensus 157 eelr~a~ekFees~E~a~~~M~~il~~e~-----e~~~~L~~lveAQl~Yh~qa~eiL~~l~~~l~ 217 (223)
T cd07614 157 EELRQAMEKFEESKEVAETSMHNLLETDI-----EQVSQLSALVDAQLDYHRQAVQILDELAEKLK 217 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666777777777777762211001 12456666777777777666666666666554
No 425
>PF08359 TetR_C_4: YsiA-like protein, C-terminal region; InterPro: IPR013570 The members of this family are thought to be TetR-type (tetracycline resistance) transcriptional regulators that bear particular similarity to YsiA (P94548 from SWISSPROT). This entry represents the C-terminal domain.; PDB: 1VI0_B.
Probab=26.92 E-value=3.5e+02 Score=22.07 Aligned_cols=63 Identities=24% Similarity=0.315 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHH------HHHH-----HHHHHHHHHHHHHHH
Q 019120 96 FEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFV------HVAA-----KAESIHQYVETMKTA 164 (346)
Q Consensus 96 FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~Fv------aLAA-----rva~LHe~Ve~lKe~ 164 (346)
||++|..|-..|++ .+.... +..+-|...++.+.+++. .|.. .-+.+++++.++.+.
T Consensus 1 ~~~~~~~~~~~i~~---~~~~~~---------~~~ekL~~~i~~~~~~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~~ 68 (133)
T PF08359_consen 1 FEEKMNRFLERIEE---AIADES---------SPEEKLRALIEAHLDFLEENPDLAIVLSLELRQSNEELRKKINEIRRE 68 (133)
T ss_dssp HHHHHHHHHHHHHH---HHCC-----------SHHHHHHHHHHHHHHHHHT-HHHHHHHHCTTS-SSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH---HHccCC---------CHHHHHHHHHHHHHHHHHhCCChhhhhHHHHhhCCHHHHHHHHHHHHH
Confidence 67777777655544 333111 123445555555554443 1211 013566777777778
Q ss_pred HHHHHH
Q 019120 165 YLADQR 170 (346)
Q Consensus 165 YL~~~R 170 (346)
|++.+.
T Consensus 69 ~~~~i~ 74 (133)
T PF08359_consen 69 YLRIIE 74 (133)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888775
No 426
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=26.91 E-value=3e+02 Score=21.42 Aligned_cols=29 Identities=17% Similarity=0.099 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhh
Q 019120 150 KAESIHQYVETMKTAYLADQRRRGDGSDPFLEAD 183 (346)
Q Consensus 150 rva~LHe~Ve~lKe~YL~~~Rr~GD~~DPFaEad 183 (346)
++..+++++.+.++++..+... |+|++.+
T Consensus 60 ~~~~~r~~~~~~r~~l~~ll~~-----~~~D~~~ 88 (125)
T PF13801_consen 60 EMRALRQELRAARQELRALLAA-----PPPDEAA 88 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-----SSS-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-----CCCCHHH
Confidence 5566666666666666666554 5665554
No 427
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=26.90 E-value=3.2e+02 Score=29.18 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
..+ ++++|++|..+..+|++||..|.
T Consensus 567 ~~~-~~~~e~~i~~le~~~~~~~~~~~ 592 (635)
T PRK11147 567 QRE-LEQLPQLLEDLEAEIEALQAQVA 592 (635)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 344 88889999999999999988875
No 428
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=26.87 E-value=4.1e+02 Score=22.82 Aligned_cols=36 Identities=14% Similarity=0.307 Sum_probs=23.0
Q ss_pred cHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Q 019120 132 SLPQVISNVHIFFVHV---------AAKAESIHQYVETMKTAYLA 167 (346)
Q Consensus 132 ~L~~~L~~~hq~FvaL---------AArva~LHe~Ve~lKe~YL~ 167 (346)
+|..-|..+|+|++.. ...++++-.-|.++|+.+.+
T Consensus 75 eiA~nL~~LY~y~~~~L~~An~~~d~~~l~ev~~~l~~Lr~aW~e 119 (124)
T TIGR00208 75 ELSASLGALYDYMYRRLVQANIKNDTSKLAEVEGYVRDFRDAWKE 119 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 7888889999988854 23444444445555655544
No 429
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=26.81 E-value=4.1e+02 Score=31.33 Aligned_cols=83 Identities=11% Similarity=0.135 Sum_probs=49.8
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhh----cCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHH
Q 019120 84 KPSAFLQQTVARFEKYLGEFRQWIEE-----LEQLIL----LDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESI 154 (346)
Q Consensus 84 ~Ps~YF~qlV~~FE~rL~~YRqqIEE-----LE~~L~----s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~L 154 (346)
+-.+|+..-+++.|++++..+..|-+ .|+.+. ...+....+ ...+......+++-+.++.++.++..|
T Consensus 208 ~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~---~~i~~~~~~N~~Ls~~L~~~t~~~n~l 284 (1109)
T PRK10929 208 LRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLP---KSIVAQFKINRELSQALNQQAQRMDLI 284 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCC---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777766665433 333322 101100111 125555567788888888888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 019120 155 HQYVETMKTAYLADQ 169 (346)
Q Consensus 155 He~Ve~lKe~YL~~~ 169 (346)
-++-...|..+.+.+
T Consensus 285 ~~~~~~~~~~l~~~~ 299 (1109)
T PRK10929 285 ASQQRQAASQTLQVR 299 (1109)
T ss_pred HHHHHHHHHHHHHHH
Confidence 887766666665544
No 430
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=26.77 E-value=4.3e+02 Score=22.98 Aligned_cols=8 Identities=13% Similarity=0.347 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 019120 96 FEKYLGEF 103 (346)
Q Consensus 96 FE~rL~~Y 103 (346)
..+.+...
T Consensus 98 I~~~i~~i 105 (213)
T PF00015_consen 98 ISEIIEEI 105 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 33333333
No 431
>COG2198 ArcB FOG: HPt domain [Signal transduction mechanisms]
Probab=26.75 E-value=2.2e+02 Score=23.44 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=15.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 019120 86 SAFLQQTVARFEKYLGEFRQWIE 108 (346)
Q Consensus 86 s~YF~qlV~~FE~rL~~YRqqIE 108 (346)
.+.+.+++..|.+.+..+..+|+
T Consensus 22 ~~~~~~ll~~f~~~~~~~l~~l~ 44 (122)
T COG2198 22 PDLLRELLAMFLEEAPAQLEQLE 44 (122)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHH
Confidence 46777888888777766655444
No 432
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=26.73 E-value=4e+02 Score=25.86 Aligned_cols=22 Identities=9% Similarity=0.215 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019120 143 FFVHVAAKAESIHQYVETMKTA 164 (346)
Q Consensus 143 ~FvaLAArva~LHe~Ve~lKe~ 164 (346)
-...+-++++.+..++++++..
T Consensus 211 ~l~~~~~~l~~~~~~l~~~~~~ 232 (423)
T TIGR01843 211 ELGRLEAELEVLKRQIDELQLE 232 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 433
>PRK12806 flagellin; Provisional
Probab=26.68 E-value=1.6e+02 Score=31.25 Aligned_cols=72 Identities=14% Similarity=0.169 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Q 019120 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA------AKAESIHQYVETMKTAYL 166 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLA------Arva~LHe~Ve~lKe~YL 166 (346)
+.+|+.++..|.|-+.-+...+..... ....++++..+|+++++.-|+.+ ...+.|.++|+.++++.+
T Consensus 51 a~~l~sqi~~l~qa~~N~~dgis~lqt------ae~aL~~i~~iLqr~reLavqaaNgt~s~~dR~ai~~Ei~~L~~~i~ 124 (475)
T PRK12806 51 SQRMTAQIRGMNQAVRNANDGISLAQV------AEGAMQETTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELE 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 555665555555544444443332110 01247889999999999888764 366788888888888877
Q ss_pred HHHH
Q 019120 167 ADQR 170 (346)
Q Consensus 167 ~~~R 170 (346)
.+-.
T Consensus 125 ~ian 128 (475)
T PRK12806 125 RIAQ 128 (475)
T ss_pred HHHh
Confidence 7653
No 434
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=26.59 E-value=3.7e+02 Score=29.33 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=27.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhcCCC
Q 019120 86 SAFLQQTVARFEKYLGEFRQWIEEL--EQLILLDPD 119 (346)
Q Consensus 86 s~YF~qlV~~FE~rL~~YRqqIEEL--E~~L~s~s~ 119 (346)
.+-|+.+|..+|+....-||+|+|. +++..+.++
T Consensus 291 nqhFQ~~v~sLEee~a~erqqlvetH~~RV~AmlNd 326 (615)
T KOG3540|consen 291 NQHFQKTVSSLEEEAARERQQLVETHEARVEAMLND 326 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5679999999999999999999985 455555554
No 435
>PF08928 DUF1910: Domain of unknown function (DUF1910); InterPro: IPR015024 This domain is found in hypothetical bacterial proteins.
Probab=26.54 E-value=76 Score=26.28 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=18.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 86 SAFLQQTVARFEKYLGEFRQWIEELE 111 (346)
Q Consensus 86 s~YF~qlV~~FE~rL~~YRqqIEELE 111 (346)
-+||.+.++..++.+..++..|.+++
T Consensus 7 e~yf~~~i~~~~e~i~~~~~~i~~~~ 32 (117)
T PF08928_consen 7 EEYFEKWIEFYEESIEEFEEKIIELK 32 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46788888888887777766666655
No 436
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=26.50 E-value=2.7e+02 Score=32.24 Aligned_cols=66 Identities=17% Similarity=0.141 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKT 163 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe 163 (346)
+..-+.++|++++.+.++|+.+|+.|...+- .. ..+ ...+++-.+-...+-.+++.|.+.++.++.
T Consensus 840 ~~~e~~rLekel~kl~Kel~kl~~~L~n~~f--~~----kap---~~~veka~~kl~~~~~~l~~le~~l~~L~~ 905 (1052)
T PRK14900 840 LAAETARVDKEIGKVDQDLAVLERKLQNPSF--VQ----NAP---PAVVEKDRARAEELREKRGKLEAHRAMLSG 905 (1052)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhcCchh--hh----cCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677889999999999999999999873321 00 112 233333333334555555666555555554
No 437
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=26.45 E-value=3.7e+02 Score=27.32 Aligned_cols=34 Identities=21% Similarity=0.422 Sum_probs=17.8
Q ss_pred CCCccHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHhh
Q 019120 82 PKKPSAFLQQTVARF-------------EKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 82 p~~Ps~YF~qlV~~F-------------E~rL~~YRqqIEELE~~L~ 115 (346)
.-++.+||.++.+.| ++++..++++|+++|+.+.
T Consensus 213 ~~r~~~Yf~~l~~~f~d~a~~~~A~l~~~~~~~~l~~~~~~~~~~i~ 259 (406)
T PF02388_consen 213 SIRSLEYFENLYDAFGDKAKFFLAELNGKEYLESLQEKLEKLEKEIE 259 (406)
T ss_dssp ----HHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHhcCCCeEEEEEEEcHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777654 4455555555555555544
No 438
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=26.39 E-value=3.6e+02 Score=28.29 Aligned_cols=56 Identities=11% Similarity=-0.021 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHH
Q 019120 96 FEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESI 154 (346)
Q Consensus 96 FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~L 154 (346)
=|.||...+.+|++||+.+.....+ .........+..-++++++.--.|-+...++
T Consensus 142 p~~Ri~~Le~e~~~i~~EI~~l~aG---~~~~ld~~~~~er~~~i~~la~~L~~DFr~V 197 (478)
T PF11855_consen 142 PERRIAELEREIAEIDAEIDRLEAG---DVPVLDDTQARERARQILQLARELPADFRRV 197 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999988833321 1222344555555555555544443333333
No 439
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=26.25 E-value=3.9e+02 Score=31.00 Aligned_cols=15 Identities=40% Similarity=0.550 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 019120 98 KYLGEFRQWIEELEQ 112 (346)
Q Consensus 98 ~rL~~YRqqIEELE~ 112 (346)
+++...+.++++++.
T Consensus 828 ~ei~~l~~~~~~~~~ 842 (1163)
T COG1196 828 QEIEELEEEIEELEE 842 (1163)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 440
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=26.23 E-value=3e+02 Score=21.11 Aligned_cols=28 Identities=14% Similarity=0.223 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
-|.+.|++....|..++..|++|+++-.
T Consensus 4 ~f~~~v~~i~~~i~~i~~~~~~l~~l~~ 31 (103)
T PF00804_consen 4 EFFDEVQEIREDIDKIKEKLNELRKLHK 31 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999988655
No 441
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=26.19 E-value=3.2e+02 Score=28.38 Aligned_cols=32 Identities=9% Similarity=0.196 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 136 VISNVHIFFVHVAAKAESIHQYVETMKTAYLA 167 (346)
Q Consensus 136 ~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~ 167 (346)
....+....-.|..+++.+.++++.+.+.|.+
T Consensus 407 ~~~~l~~~i~~l~~~i~~~~~rl~~~e~rl~~ 438 (462)
T PRK08032 407 ATDGVNKTLKKLTKQYNAVSDSIDATIARYKA 438 (462)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555667777777777776666554
No 442
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=26.18 E-value=3.4e+02 Score=21.70 Aligned_cols=78 Identities=13% Similarity=0.025 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC-ccc------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 88 FLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHG-SSL------LQSLPQVISNVHIFFVHVAAKAESIHQYVET 160 (346)
Q Consensus 88 YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~g-s~t------pQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~ 160 (346)
.|-.+..-|++...+.+.+++++...+...++....... -.. ..++...|+..-+..-.+...+..+++..++
T Consensus 29 ~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~l~~~a~~ 108 (142)
T PF00210_consen 29 NFPGLAKFFQDQAEEEREHADELAERILMLGGKPSGSPVEIPEIPKPPEWTDPREALEAALEDEKEIIEEYRELIKLAEK 108 (142)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHHHHHHHHSSSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667888888888999999998888866542111000 000 1355666666666666666666666666665
Q ss_pred HHHHH
Q 019120 161 MKTAY 165 (346)
Q Consensus 161 lKe~Y 165 (346)
.+|..
T Consensus 109 ~~D~~ 113 (142)
T PF00210_consen 109 EGDPE 113 (142)
T ss_dssp TTSHH
T ss_pred cCCHH
Confidence 55543
No 443
>PRK08869 flagellin; Reviewed
Probab=26.11 E-value=1.8e+02 Score=29.44 Aligned_cols=83 Identities=6% Similarity=0.094 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Q 019120 92 TVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVA------AKAESIHQYVETMKTAY 165 (346)
Q Consensus 92 lV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLA------Arva~LHe~Ve~lKe~Y 165 (346)
.+.+|..++..|.+-+.-+...+...... ...++.|...|+++++.-|+.+ ...+.|.++++.++++.
T Consensus 49 i~~~l~~~~~~~~q~~~N~~~~~s~lq~a------e~aL~~i~~~L~r~reLavqa~Ngt~s~~dr~ai~~E~~~L~~~i 122 (376)
T PRK08869 49 ISNRLTTQIRGLDVAVRNANDGISIAQTA------EGAMNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDEL 122 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 46777777666666666555544422110 1247889999999999888774 36778888899888887
Q ss_pred HHHHH-hcCCCCCccc
Q 019120 166 LADQR-RRGDGSDPFL 180 (346)
Q Consensus 166 L~~~R-r~GD~~DPFa 180 (346)
...-. ..-+.+..|.
T Consensus 123 ~~ian~t~~nG~~Lf~ 138 (376)
T PRK08869 123 NRIAETTSFGGTKLLN 138 (376)
T ss_pred HHHHhhCCcCCeeeec
Confidence 77554 2334455663
No 444
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=26.10 E-value=3e+02 Score=27.77 Aligned_cols=13 Identities=23% Similarity=0.345 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 019120 100 LGEFRQWIEELEQ 112 (346)
Q Consensus 100 L~~YRqqIEELE~ 112 (346)
|..||--++|=|.
T Consensus 216 MAKCR~L~qENeE 228 (330)
T KOG2991|consen 216 MAKCRTLQQENEE 228 (330)
T ss_pred HHHHHHHHHHHHH
Confidence 4445544444443
No 445
>PF05596 Taeniidae_ag: Taeniidae antigen; InterPro: IPR008860 This family consists of several antigen proteins from Taenia and Echinococcus (tapeworm) species.
Probab=25.96 E-value=3.3e+02 Score=21.55 Aligned_cols=55 Identities=24% Similarity=0.460 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 019120 97 EKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAE-SIHQYVETM 161 (346)
Q Consensus 97 E~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva-~LHe~Ve~l 161 (346)
|.--..++.+|+++++....+. +| |-|...+..+.+++.-+=.++. .|.+++..+
T Consensus 6 ~~~~k~~kK~i~~v~~FF~~DP------lG----qkIa~l~kdw~~~~~~~r~KiR~~L~ey~k~L 61 (64)
T PF05596_consen 6 EDDKKSVKKWIEEVRNFFYEDP------LG----QKIAQLAKDWNEICQEVRKKIRAALAEYCKGL 61 (64)
T ss_pred hhhHHhHHHHHHHHHHHhccCc------hH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445677889999999877332 33 6778888888877776644443 234444443
No 446
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=25.91 E-value=5.6e+02 Score=28.52 Aligned_cols=11 Identities=0% Similarity=0.286 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 019120 146 HVAAKAESIHQ 156 (346)
Q Consensus 146 aLAArva~LHe 156 (346)
.+-.++..+.+
T Consensus 879 ~l~~~l~~l~~ 889 (1164)
T TIGR02169 879 DLESRLGDLKK 889 (1164)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 447
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=25.79 E-value=7.6e+02 Score=27.04 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=12.8
Q ss_pred hhhHHHHHHHHHHHHHHhhchH
Q 019120 2 ERQKAQLQERMAVVKDMLRNTE 23 (346)
Q Consensus 2 er~k~~~~~l~~~V~~~lrntE 23 (346)
|+.+..-+.|...+.+.+|...
T Consensus 240 e~~~~K~~~l~~~l~e~lr~~~ 261 (594)
T PF05667_consen 240 EYRKRKQQRLQKRLAEQLRQAA 261 (594)
T ss_pred hhhHHHHHHHHHHHHHHHHHhh
Confidence 3445555566666666666553
No 448
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=25.65 E-value=8.6e+02 Score=28.50 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 91 QTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQ 169 (346)
Q Consensus 91 qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~ 169 (346)
+-++..+++|+..+...+++|..|.. +...+..++.-....-.+++...+.++.+++...++.
T Consensus 607 ~~l~~~~~~l~~~~~~~~~~e~~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 669 (1201)
T PF12128_consen 607 ERLEQAEDQLQSAEERQEELEKQLKQ----------------INKKIEELKREITQAEQELKQAEQDLQRLKNEREQLK 669 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33445555555555555666666552 2333444444444444455555555555555444433
No 449
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=25.57 E-value=2.9e+02 Score=31.26 Aligned_cols=36 Identities=22% Similarity=0.427 Sum_probs=29.3
Q ss_pred chhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 74 VFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQL 113 (346)
Q Consensus 74 v~Dfys~~p~~Ps~YF~qlV~~FE~rL~~YRqqIEELE~~ 113 (346)
+...|-.+...|-+||. +||+-+.++..+|+||.+.
T Consensus 81 ~~~~~~~~~~~~~~~~l----dfEkpi~ele~ki~el~~~ 116 (762)
T PLN03229 81 YLSHFKPLKEKPKPVTL----DFEKPLVDLEKKIVDVRKM 116 (762)
T ss_pred HhhccCCCCCCCCCCCc----chhhHHHHHHHHHHHHHhh
Confidence 45556777788888864 5999999999999999876
No 450
>PRK12584 flagellin A; Reviewed
Probab=25.57 E-value=2.9e+02 Score=29.46 Aligned_cols=64 Identities=8% Similarity=0.072 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Q 019120 98 KYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAA------KAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 98 ~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAA------rva~LHe~Ve~lKe~YL~~~R 170 (346)
..|.+|.+.|.+....|+... ..++.+...|+++++..|+.+- ..+.|..+|+.++++.+.+-.
T Consensus 59 ~~l~q~~~N~~~g~s~lqtae---------~aL~~i~~~Lqr~relavqaangt~s~~dR~ai~~Ei~~L~~ei~~ian 128 (510)
T PRK12584 59 SSLGQAIANTNDGMGIIQVAD---------KAMDEQLKILDTIKVKATQAAQDGQTTESRKAIQSDIVRLIQGLDNIGN 128 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666666433 2478899999999999998753 677888888888888766543
No 451
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=25.57 E-value=4.5e+02 Score=22.91 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019120 146 HVAAKAESIHQYVETMKTAYLADQRR 171 (346)
Q Consensus 146 aLAArva~LHe~Ve~lKe~YL~~~Rr 171 (346)
.|-..++.-..++++++.+|-.+++.
T Consensus 84 ~lq~~I~Ek~~eLERl~~E~~sL~kv 109 (120)
T PF14931_consen 84 QLQALIAEKKMELERLRSEYESLQKV 109 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777777899999999988886
No 452
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=25.53 E-value=4.7e+02 Score=23.78 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 132 SLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 132 ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
....-|..++...-+....+..++..|++..+.|.+.++
T Consensus 68 nyq~fI~~Le~~I~q~~~~~~~~~~~ve~~r~~w~ek~~ 106 (148)
T COG2882 68 NYQQFISQLEVAIDQQQSQLSKLRKQVEQKREIWQEKQI 106 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666667777777778777777777654
No 453
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=25.34 E-value=7e+02 Score=26.32 Aligned_cols=82 Identities=17% Similarity=0.245 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 019120 91 QTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQ- 169 (346)
Q Consensus 91 qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~- 169 (346)
+-+.++-++++.|...++.||..|..-. ..+..|..-|+.+++-...|--++..-..-.+.+.. |++.-
T Consensus 14 ~~~~~Lh~~i~~cd~~L~~le~~L~~Fq---------~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~-~i~~i~ 83 (508)
T PF04129_consen 14 ENFADLHNQIQECDSILESLEEMLSNFQ---------NDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSP-FIDDIV 83 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHc
Confidence 4566777788889999999998887332 226678888888888888887777655444443332 22221
Q ss_pred ------H--hcCCCCCccchh
Q 019120 170 ------R--RRGDGSDPFLEA 182 (346)
Q Consensus 170 ------R--r~GD~~DPFaEa 182 (346)
+ ..|+.++.|.+.
T Consensus 84 ipP~lI~~I~~~~v~e~~~~~ 104 (508)
T PF04129_consen 84 IPPDLIRSICEGPVNEQYIEE 104 (508)
T ss_pred CCHHHHHhHhcCCCCHHHHHH
Confidence 1 356666666554
No 454
>PF13514 AAA_27: AAA domain
Probab=25.31 E-value=4.1e+02 Score=30.55 Aligned_cols=26 Identities=4% Similarity=0.194 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 90 QQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 90 ~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
.+-+++++++++.+++.++++|..+.
T Consensus 742 ~~~~~~~~~ri~~~~~~~~~f~~~~~ 767 (1111)
T PF13514_consen 742 LAEIRELRRRIEQMEADLAAFEEQVA 767 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777777777777777665
No 455
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=25.30 E-value=3.3e+02 Score=31.52 Aligned_cols=37 Identities=5% Similarity=0.108 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 134 PQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 134 ~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
...+..+..-+..+-.+++.+++++.+++..|-.++.
T Consensus 438 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 474 (1163)
T COG1196 438 QTELEELNEELEELEEQLEELRDRLKELERELAELQE 474 (1163)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555544443
No 456
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=25.22 E-value=4e+02 Score=24.76 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=28.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Q 019120 130 LQSLPQVISNVHIFFVHVAAKAE---SIHQYVETMKTAYLADQRR 171 (346)
Q Consensus 130 pQ~L~~~L~~~hq~FvaLAArva---~LHe~Ve~lKe~YL~~~Rr 171 (346)
..+|-.++.++..+..++...-. .|++.|+...+++++.-.+
T Consensus 89 ~~dlLpviDnlerAl~~~~~~~d~~~~l~~Gvem~~~~l~~~L~k 133 (193)
T COG0576 89 AKDLLPVIDNLERALEAAEDDKDPEKALLEGVEMTLDQLLDALEK 133 (193)
T ss_pred HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777666444432 5788899999999986653
No 457
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=25.08 E-value=3.7e+02 Score=25.48 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 019120 93 VARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~ 115 (346)
++.+|+.+....+.|++|...+.
T Consensus 47 ~~~~e~~l~~L~~d~~~L~~k~~ 69 (264)
T PF06008_consen 47 LDPLEKELESLEQDVENLQEKAT 69 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555544443
No 458
>PRK08411 flagellin; Reviewed
Probab=25.06 E-value=2.1e+02 Score=31.35 Aligned_cols=69 Identities=3% Similarity=0.001 Sum_probs=47.9
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Q 019120 93 VARFEKYL---GEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAA------KAESIHQYVETMKT 163 (346)
Q Consensus 93 V~~FE~rL---~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAA------rva~LHe~Ve~lKe 163 (346)
+.+|+.++ .+|.+.|.+....|+... ..++++...|+++.+..|+.+- ..+.|.++|+.+++
T Consensus 51 a~rL~sqi~~L~Qa~rNa~dgiS~LqtAE---------gAL~ei~diLqRiRELaVQAaNGT~S~~DR~AIq~EI~qL~e 121 (572)
T PRK08411 51 ADSLRSQANTLGQAISNGNDALGILQTAD---------KAMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLME 121 (572)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 44555444 445555566666666332 2478899999999999998764 67788888998888
Q ss_pred HHHHHHH
Q 019120 164 AYLADQR 170 (346)
Q Consensus 164 ~YL~~~R 170 (346)
+-+.+-.
T Consensus 122 qI~~IAN 128 (572)
T PRK08411 122 ELDNIAN 128 (572)
T ss_pred HHHHHHh
Confidence 8666543
No 459
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=25.05 E-value=1.7e+02 Score=21.50 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019120 89 LQQTVARFEKYLGEFRQWIEELE 111 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE 111 (346)
+.+-|.+++......+++|+.|+
T Consensus 30 le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 30 LEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444
No 460
>PF15011 CK2S: Casein Kinase 2 substrate
Probab=24.97 E-value=5.3e+02 Score=23.46 Aligned_cols=36 Identities=3% Similarity=0.118 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 135 QVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 135 ~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
+.+..+...|..|-.+++.+++-++.++....+.++
T Consensus 64 Kq~~ale~vl~~L~e~l~~l~~v~~~l~~~~~~~~~ 99 (168)
T PF15011_consen 64 KQLEALETVLAKLRETLEELQKVRDSLSRQVRDVFQ 99 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777888888888888888888888777776
No 461
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=24.90 E-value=4.9e+02 Score=25.05 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=23.2
Q ss_pred CCccHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 019120 83 KKPSAFLQQT---VARFEKYLGEFRQWIEELEQL 113 (346)
Q Consensus 83 ~~Ps~YF~ql---V~~FE~rL~~YRqqIEELE~~ 113 (346)
.=|.+||.+. |+.+|++|......|+-|-+|
T Consensus 18 ~E~D~wF~~k~~~ie~LE~qLk~L~k~~~~lv~~ 51 (234)
T cd07665 18 NESDVWFEEKLQEVECEEQRLRKLHAVVETLVNH 51 (234)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788764 778888998888888877664
No 462
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=24.86 E-value=4.8e+02 Score=22.90 Aligned_cols=31 Identities=13% Similarity=0.126 Sum_probs=23.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 85 PSAFLQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 85 Ps~YF~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
+-+=|.+.+..|-..|..-.++||.|=..|-
T Consensus 63 ~~~~~~~~~~elA~dIi~kakqIe~LIdsLP 93 (144)
T PF11221_consen 63 PPEEFEENIKELATDIIRKAKQIEYLIDSLP 93 (144)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5566788888888888888888888766655
No 463
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.77 E-value=4.2e+02 Score=29.44 Aligned_cols=23 Identities=9% Similarity=0.053 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019120 145 VHVAAKAESIHQYVETMKTAYLA 167 (346)
Q Consensus 145 vaLAArva~LHe~Ve~lKe~YL~ 167 (346)
..+-.+++.|...||.+|..+-+
T Consensus 665 q~~~~~~~~L~~~iET~~~~~~K 687 (741)
T KOG4460|consen 665 QLIPDQLRHLGNAIETVTMKKDK 687 (741)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455555544444
No 464
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=24.77 E-value=2.4e+02 Score=23.69 Aligned_cols=49 Identities=22% Similarity=0.253 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--cCCCCCCCCCCccccccHHHHHHHHHH
Q 019120 91 QTVARFEKYLGEFRQWIEELEQLIL--LDPDRNSSSHGSSLLQSLPQVISNVHI 142 (346)
Q Consensus 91 qlV~~FE~rL~~YRqqIEELE~~L~--s~s~~~~S~~gs~tpQ~L~~~L~~~hq 142 (346)
+++.+..++-++.|++-|+..+.++ ..++.|.. ...|.++.+.|+++|.
T Consensus 60 ~~~~~~~~~~qq~r~~~e~~~e~ik~~lk~d~Ca~---~~~P~~V~d~L~~~~~ 110 (110)
T PF10828_consen 60 QAVEEQQKREQQLRQQSEERRESIKTALKDDPCAN---TAVPDAVIDSLRRLHK 110 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccc---CCCCHHHHHHHHHhhC
Confidence 3455555555555555555555444 22332333 2468888898888883
No 465
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=24.68 E-value=78 Score=31.56 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhhchHHHHHHhhh
Q 019120 8 LQERMAVVKDMLRNTEIAVRSFMM 31 (346)
Q Consensus 8 ~~~l~~~V~~~lrntE~Avrs~~~ 31 (346)
.||+.+.+..-+||.|-|-+++.+
T Consensus 201 ~qe~~kleRkrlrnreaa~Kcr~r 224 (279)
T KOG0837|consen 201 DQEKIKLERKRLRNREAASKCRKR 224 (279)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHH
Confidence 577778888888888888887773
No 466
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=24.55 E-value=1.2e+02 Score=24.33 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 019120 93 VARFEKYLGEFRQWIEELEQLILLDP 118 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s~s 118 (346)
|.++|+|+..++..||-||..+....
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~kK~ 52 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAKKK 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 89999999999999999999888554
No 467
>PF09786 CytochromB561_N: Cytochrome B561, N terminal; InterPro: IPR019176 Members of this family include cytochrome B561, as well as various other putative, uncharacterised proteins.
Probab=24.55 E-value=1.3e+02 Score=32.61 Aligned_cols=85 Identities=19% Similarity=0.322 Sum_probs=50.2
Q ss_pred cHHHHHHH--HHHHHHHHHHHHHHHH--HH----------HHhhcCCCCCCCCCCccccccHHHHHHHHH----------
Q 019120 86 SAFLQQTV--ARFEKYLGEFRQWIEE--LE----------QLILLDPDRNSSSHGSSLLQSLPQVISNVH---------- 141 (346)
Q Consensus 86 s~YF~qlV--~~FE~rL~~YRqqIEE--LE----------~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~h---------- 141 (346)
.+.+.++- .++|+-.+.+|+||-. |+ +.|..........+|...+..|..+++++.
T Consensus 328 ~e~~~~l~~~~~l~~w~~~LR~Wis~tiL~pLv~eI~~v~~~~~~~~~~~~l~ig~~~l~~Lr~~a~~~~~~~~~~p~Lp 407 (579)
T PF09786_consen 328 SEVWKRLGVTPQLEQWTANLRQWISSTILQPLVKEIDSVNKQLRKAGLNPDLQIGQSSLEQLRQAAEQQQQVQLQIPTLP 407 (579)
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHhhcccccccCCchH
Confidence 66777775 8888999999998765 22 222211110112445556777777762211
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 019120 142 --IFFVHVAAKAESIHQYVETMKTA-YLADQR 170 (346)
Q Consensus 142 --q~FvaLAArva~LHe~Ve~lKe~-YL~~~R 170 (346)
.-|+.+-.+=++|-++|.+|.+. ||+..|
T Consensus 408 ~l~~~Ld~~~nq~Ylv~RI~eLA~g~cm~~y~ 439 (579)
T PF09786_consen 408 LLLPFLDAHSNQEYLVQRIRELAKGGCMSEYR 439 (579)
T ss_pred HHHHHHhccccHHHHHHHHHHHhcCCcccccc
Confidence 24555555556777777777664 777666
No 468
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=24.50 E-value=9.7e+02 Score=26.90 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
+.++++++|++-..+.+..+++|+.+.
T Consensus 513 ~~~li~~L~~~~~~~e~~~~~~~~~~~ 539 (771)
T TIGR01069 513 INVLIEKLSALEKELEQKNEHLEKLLK 539 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666554
No 469
>PRK13588 flagellin B; Provisional
Probab=24.46 E-value=2.3e+02 Score=30.47 Aligned_cols=69 Identities=6% Similarity=0.083 Sum_probs=46.9
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Q 019120 93 VARFEKY---LGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAA------KAESIHQYVETMKT 163 (346)
Q Consensus 93 V~~FE~r---L~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAA------rva~LHe~Ve~lKe 163 (346)
..+|+.+ |.+|.+.|.+....|+... ..++.|...|+++++..|+.+- ..+.|..+|+.+++
T Consensus 51 a~~l~sqi~~l~Qa~~N~~dgis~lqtae---------~aL~~i~~iLqrireLavqAaNgt~s~~dR~aiq~Ei~qL~~ 121 (514)
T PRK13588 51 ADSLRSQSANLGQAIRNANDAIGMVQTAD---------KAMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLE 121 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Confidence 4444444 4455556666666666333 2478999999999999997754 56778888888888
Q ss_pred HHHHHHH
Q 019120 164 AYLADQR 170 (346)
Q Consensus 164 ~YL~~~R 170 (346)
+-..+-.
T Consensus 122 eI~~ian 128 (514)
T PRK13588 122 ELDNIAN 128 (514)
T ss_pred HHHHHHh
Confidence 7665443
No 470
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=24.40 E-value=3.4e+02 Score=21.10 Aligned_cols=42 Identities=17% Similarity=0.179 Sum_probs=30.7
Q ss_pred chhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 74 VFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 74 v~Dfys~~p~~Ps~YF~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
....+.++..--..-+.++.++|-+.+...+++|.++...|.
T Consensus 35 ~~~~~l~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~ 76 (125)
T PF13801_consen 35 MLADMLNLTPEQQAKLRALMDEFRQEMRALRQELRAARQELR 76 (125)
T ss_dssp HHHHHS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555567788888888999999998888887777
No 471
>PRK10698 phage shock protein PspA; Provisional
Probab=24.36 E-value=6.1e+02 Score=23.94 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=8.5
Q ss_pred CCCCCccchhhHHHH
Q 019120 173 GDGSDPFLEADRRET 187 (346)
Q Consensus 173 GD~~DPFaEadr~Ea 187 (346)
.|..+.|..-+|-|.
T Consensus 159 ~~~~~a~~~f~rmE~ 173 (222)
T PRK10698 159 GKLDEAMARFESFER 173 (222)
T ss_pred CCcchHHHHHHHHHH
Confidence 455666666555443
No 472
>PRK14157 heat shock protein GrpE; Provisional
Probab=24.34 E-value=2.5e+02 Score=27.27 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQL 113 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~ 113 (346)
|.++..+||++-++.++.++++-+.
T Consensus 100 llR~~AEfeNyRKR~~rE~e~~~~~ 124 (227)
T PRK14157 100 LQRERAEFINYRNRTQKEQDRFRQH 124 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666655555443
No 473
>PF00143 Interferon: Interferon alpha/beta domain; InterPro: IPR000471 Interferons [] are proteins which produce antiviral and antiproliferative responses in cells. On the basis of their sequence interferons are classified into five groups: alpha, alpha-II (or omega), beta, delta (or trophoblast). The sequence differences may possibly cause different responses to various inducers, or result in the recognition of different target cell types []. The main conserved structural feature of interferons is a disulphide bond that, except in mouse beta interferon, occurs in all alpha, beta and omega sequences.; GO: 0005126 cytokine receptor binding, 0006952 defense response, 0005576 extracellular region; PDB: 3UX9_C 3PIW_A 1AU1_B 1WU3_I 3PIV_B 1B5L_A 3SE4_B 3OQ3_A 2KZ1_A 1ITF_A ....
Probab=24.28 E-value=3.9e+02 Score=24.13 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHH
Q 019120 97 EKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHV 147 (346)
Q Consensus 97 E~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaL 147 (346)
|+=+....+||++||.+|....+... .+-.-......+..||-.+
T Consensus 81 e~~l~~L~~Ql~~Le~Cl~~~~~~~~------~~~~~~~~~l~lkkYF~rI 125 (162)
T PF00143_consen 81 EQFLNGLHQQLEDLEQCLEEEMEEEE------SPLMREDSSLALKKYFQRI 125 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTSSTSS------SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc------ccccccchhHHHHHHHHHH
Confidence 44455667999999999884432111 1222234456778888766
No 474
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=24.27 E-value=3.3e+02 Score=26.91 Aligned_cols=40 Identities=13% Similarity=0.059 Sum_probs=30.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 131 QSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 131 Q~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
++|...-.+.|..||..|..+..+.+.++++.+.--++..
T Consensus 28 ~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~ 67 (338)
T PF04124_consen 28 AQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLD 67 (338)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888999999888888888887777666544444
No 475
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=24.25 E-value=3.2e+02 Score=29.20 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 133 LPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 133 L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~R 170 (346)
|...|.+.+..|-.|-.++..+-++++.+.+.+.+++.
T Consensus 363 ~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~ 400 (560)
T PF06160_consen 363 LEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINE 400 (560)
T ss_pred HHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666677776666666666554
No 476
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=24.20 E-value=3.4e+02 Score=20.95 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=37.3
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 93 VARFEKYLGEF-RQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKT 163 (346)
Q Consensus 93 V~~FE~rL~~Y-RqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe 163 (346)
+.+++++|..- +..-+||.+++-.. . .-+-.....|.++..-+..|-..|..|-..++.+.+
T Consensus 24 i~~~~~~L~~~i~~~~~eLr~~V~~n----Y-----~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l~~ 86 (87)
T PF08700_consen 24 IRQLENKLRQEIEEKDEELRKLVYEN----Y-----RDFIEASDEISSMENDLSELRNLLSELQQSIQSLQE 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh----H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444444433 33445666666511 1 225666778888888887777777777777776653
No 477
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=24.18 E-value=5.1e+02 Score=30.67 Aligned_cols=93 Identities=13% Similarity=0.085 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Q 019120 90 QQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIF----------FVHVAAKAESIHQYVE 159 (346)
Q Consensus 90 ~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~----------FvaLAArva~LHe~Ve 159 (346)
.-.+..-+-+|+.++++|.+.|-.+...+.++-..+. .+..+...++++... +-.|=-+...||+.+.
T Consensus 412 ~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~--~ld~~q~eve~l~~~l~~l~~~~~~~e~l~q~~~~l~~~~~ 489 (1174)
T KOG0933|consen 412 STEIKQAKLKLEHLRKELKLREGELATASAEYVKDIE--ELDALQNEVEKLKKRLQSLGYKIGQEEALKQRRAKLHEDIG 489 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHH
Confidence 3345555566677777777666666544332111110 112222333333332 2345556777888888
Q ss_pred HHHHHHHHHHHhcC----CCCCccchhhH
Q 019120 160 TMKTAYLADQRRRG----DGSDPFLEADR 184 (346)
Q Consensus 160 ~lKe~YL~~~Rr~G----D~~DPFaEadr 184 (346)
++|+.+-.+-++.+ .|.||--.-||
T Consensus 490 ~lk~~~~~l~a~~~~~~f~Y~dP~~nfdr 518 (1174)
T KOG0933|consen 490 RLKDELDRLLARLANYEFTYQDPEPNFDR 518 (1174)
T ss_pred HHHHHHHHHHhhhcccccccCCCCccchH
Confidence 88887666555333 33566444443
No 478
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.14 E-value=3.1e+02 Score=27.34 Aligned_cols=26 Identities=15% Similarity=0.374 Sum_probs=11.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 132 SLPQVISNVHIFFVHVAAKAESIHQY 157 (346)
Q Consensus 132 ~L~~~L~~~hq~FvaLAArva~LHe~ 157 (346)
+|...|.++++..-.++++.+.|.+-
T Consensus 198 ~i~~~i~~l~~~~~~~~~~~~~l~~~ 223 (359)
T COG1463 198 DIGALIANLNQLLDSLAAASDQLDRL 223 (359)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 44444444444444444444333333
No 479
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=24.13 E-value=7.3e+02 Score=25.21 Aligned_cols=24 Identities=25% Similarity=0.237 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 92 TVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 92 lV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
+-..+..+|..++++++.+++.|.
T Consensus 321 L~~a~~~~L~~~~~~L~~l~~rL~ 344 (438)
T PRK00286 321 LQRALERRLRLAKQRLERLSQRLQ 344 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444445555555555555554
No 480
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=24.12 E-value=3.5e+02 Score=21.07 Aligned_cols=23 Identities=4% Similarity=0.169 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 019120 93 VARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~ 115 (346)
|++++.+++.+..+|++|+.-+.
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~ 27 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVN 27 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666655544
No 481
>PRK11281 hypothetical protein; Provisional
Probab=24.11 E-value=5.9e+02 Score=30.04 Aligned_cols=85 Identities=13% Similarity=0.137 Sum_probs=52.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhc-CC-CCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 85 PSAFLQQTVARFEKYLGEFRQWIEE-----LEQLILL-DP-DRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQY 157 (346)
Q Consensus 85 Ps~YF~qlV~~FE~rL~~YRqqIEE-----LE~~L~s-~s-~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~ 157 (346)
-.+|...-+++.|++++..+..|-+ .|+.+.- .. +....-......+.....-+++-+.++.++-++..|-++
T Consensus 228 q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~~~a~~~~~~~~~~~~p~i~~~~~~N~~Ls~~L~~~t~~~~~l~~~ 307 (1113)
T PRK11281 228 QRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNTLTQQ 307 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777777777766665533 3433331 10 000110111235667777888889999999999988888
Q ss_pred HHHHHHHHHHHH
Q 019120 158 VETMKTAYLADQ 169 (346)
Q Consensus 158 Ve~lKe~YL~~~ 169 (346)
....|..+-+.+
T Consensus 308 ~~~~~~~l~~~~ 319 (1113)
T PRK11281 308 NLRVKNWLDRLT 319 (1113)
T ss_pred HHHHHHHHHHHH
Confidence 777776665544
No 482
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=24.05 E-value=6.3e+02 Score=25.92 Aligned_cols=61 Identities=15% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD 168 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~ 168 (346)
+.+|...|+..+..|..-|.|++|- ...-.++-...-.++.+|+.|+++=.+.++.|++.
T Consensus 334 l~~L~~~Y~~F~~aY~~LL~Ev~RR--------------------r~~~~k~~~i~~~~~eeL~~l~eeE~~~Re~F~~e 393 (412)
T PF04108_consen 334 LEQLCEFYEGFLSAYDSLLLEVERR--------------------RAVRDKMKKIIREANEELDKLREEEQRRREAFLKE 393 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 019120 169 Q 169 (346)
Q Consensus 169 ~ 169 (346)
+
T Consensus 394 ~ 394 (412)
T PF04108_consen 394 Y 394 (412)
T ss_pred c
No 483
>PF14165 YtzH: YtzH-like protein
Probab=23.94 E-value=78 Score=26.65 Aligned_cols=34 Identities=12% Similarity=0.121 Sum_probs=23.0
Q ss_pred HHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHH
Q 019120 106 WIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFV 145 (346)
Q Consensus 106 qIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~Fv 145 (346)
.-|+|||++++.-..+ ..-++|..+|..+|.|=-
T Consensus 27 EcEQieRLvksLm~n~------~i~~~ik~~L~~Iy~ysq 60 (87)
T PF14165_consen 27 ECEQIERLVKSLMANP------NIDADIKQTLEEIYSYSQ 60 (87)
T ss_pred HHHHHHHHHHHHHcCC------CcCHHHHHHHHHHHHHHc
Confidence 3467888888444311 235789999999988754
No 484
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=23.91 E-value=2.4e+02 Score=20.93 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019120 140 VHIFFVHVAAKAESIHQYVETMKTAYLADQRRRG 173 (346)
Q Consensus 140 ~hq~FvaLAArva~LHe~Ve~lKe~YL~~~Rr~G 173 (346)
++.-.-.|.+.++.+.+.|+.+..++ +..|.+|
T Consensus 7 L~~qL~qL~aNL~~t~~~l~~~s~Q~-~~i~~LG 39 (45)
T PF08227_consen 7 LASQLAQLQANLADTENLLEMTSIQA-NSIRKLG 39 (45)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHH
Confidence 33334444444445555555555566 5555444
No 485
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=23.79 E-value=3.6e+02 Score=23.20 Aligned_cols=63 Identities=14% Similarity=0.089 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTA 164 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~ 164 (346)
|.++.+....+..++++|.......- .-+..+...+...++.+-.|-.+...+..+.+.+-..
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~---------~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~ 91 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLE---------PELEELRSQLQELYEELKELESEYQEKEQQQDELSSN 91 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44555555555555555544433111 1245556666666666666666666655555555443
No 486
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=23.78 E-value=3.2e+02 Score=30.19 Aligned_cols=25 Identities=12% Similarity=0.029 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 142 IFFVHVAAKAESIHQYVETMKTAYL 166 (346)
Q Consensus 142 q~FvaLAArva~LHe~Ve~lKe~YL 166 (346)
...-.+..+++.+.++++...+.|+
T Consensus 607 ~~i~~l~~~i~~~e~rl~~~e~rl~ 631 (661)
T PRK06664 607 ERIADNNKKIEEYEKKLESKERKLK 631 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555544444433
No 487
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=23.77 E-value=4.2e+02 Score=28.49 Aligned_cols=20 Identities=15% Similarity=0.061 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019120 151 AESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 151 va~LHe~Ve~lKe~YL~~~R 170 (346)
+..+++++...++.|-...+
T Consensus 249 ~~~~~~~l~~~~~~~~~~~~ 268 (646)
T PRK05771 249 LLALYEYLEIELERAEALSK 268 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34456667766666665554
No 488
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=23.71 E-value=1.7e+02 Score=23.72 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=0.0
Q ss_pred HHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhcCCC
Q 019120 87 AFLQQTVAR---------FEKYLGEFRQWIEELEQLILLDPD 119 (346)
Q Consensus 87 ~YF~qlV~~---------FE~rL~~YRqqIEELE~~L~s~s~ 119 (346)
+.|.+++.. |.+++.+|...+|.|+.++...++
T Consensus 34 e~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~~v~~~~~ 75 (75)
T cd02682 34 EVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEKQNPASSA 75 (75)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHccccCC
No 489
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=23.71 E-value=4.9e+02 Score=22.65 Aligned_cols=70 Identities=10% Similarity=0.108 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019120 95 RFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGD 174 (346)
Q Consensus 95 ~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~Rr~GD 174 (346)
..++++..|++.-+++|..|...=+ .--+++-..|.+.|... ..+..-+++|.++|+.-..-++.+++
T Consensus 37 g~~~~~~~f~~~~~~~~~~L~~vV~--------eh~q~Fn~sI~sy~~i~----~~i~~sq~~i~~lK~~L~~ak~~L~~ 104 (142)
T PF04048_consen 37 GRAHRYQEFEELKKRIEKALQEVVN--------EHYQGFNSSIGSYSQIL----SSISESQERIRELKESLQEAKSLLGC 104 (142)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677788888888888887772111 00234445554444433 34455666666666654444444444
Q ss_pred CC
Q 019120 175 GS 176 (346)
Q Consensus 175 ~~ 176 (346)
.+
T Consensus 105 ~~ 106 (142)
T PF04048_consen 105 RR 106 (142)
T ss_pred CC
Confidence 33
No 490
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=23.62 E-value=2.3e+02 Score=26.49 Aligned_cols=27 Identities=15% Similarity=0.329 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLIL 115 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~ 115 (346)
+....+.++.++..|.++|+++|..|.
T Consensus 191 i~~~~~~l~~~~~~~~~~i~~~~~rl~ 217 (239)
T PF07195_consen 191 ITSRIDSLNSQIKSLDKQIEDLEERLE 217 (239)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666666666666666655
No 491
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=23.59 E-value=3.8e+02 Score=21.27 Aligned_cols=21 Identities=24% Similarity=0.162 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCC
Q 019120 98 KYLGEFRQWIEELEQLILLDP 118 (346)
Q Consensus 98 ~rL~~YRqqIEELE~~L~s~s 118 (346)
..|..+-+.|..||+.+...+
T Consensus 3 ~~l~~in~~v~~l~k~~~~lG 23 (102)
T PF14523_consen 3 SNLFKINQNVSQLEKLVNQLG 23 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHhC
Confidence 456677778888888888554
No 492
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=23.53 E-value=4.8e+02 Score=26.04 Aligned_cols=61 Identities=8% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD 168 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~ 168 (346)
|...|+++-.-|+.....||+||+.+-.... ..++..++ .++..+++.+.++++..+..
T Consensus 137 ld~iVd~~ad~lE~~~~~ld~ls~~if~~~~----------~~~~~~~l-----------~~i~~l~~~~~~~r~~l~~~ 195 (316)
T PRK11085 137 FETKIEQLADEIENIYSDLEKLSRVIMEGHQ----------GDEYDEAL-----------STLAELEDIGWKVRLCLMDT 195 (316)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhccCCC----------chhHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 019120 169 QR 170 (346)
Q Consensus 169 ~R 170 (346)
+|
T Consensus 196 ~r 197 (316)
T PRK11085 196 QR 197 (316)
T ss_pred HH
No 493
>KOG4559 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.53 E-value=5.1e+02 Score=22.78 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=15.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHH
Q 019120 85 PSAFLQQTVARFEKYLGEFRQW 106 (346)
Q Consensus 85 Ps~YF~qlV~~FE~rL~~YRqq 106 (346)
|-+-..+|.++|-++..+|-|.
T Consensus 23 ~~PhirqLAdkM~dKt~ef~qH 44 (120)
T KOG4559|consen 23 HDPHIRQLADKMFDKTEEFFQH 44 (120)
T ss_pred CCccHHHHHHHHHHhHHHHHHH
Confidence 3455677888888888877764
No 494
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=23.48 E-value=4.6e+02 Score=23.14 Aligned_cols=72 Identities=14% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD 168 (346)
Q Consensus 89 F~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~ 168 (346)
..+.+++..+.+......++++...+.... ...++|...++.+.+.+-.+......|.+.+++|++..-.+
T Consensus 191 ~~~~~~~i~~~i~~i~~~~~~~~~~~~~~~---------~~~~~i~~~~~~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 261 (262)
T smart00283 191 IVDSVEEIADLVQEIAAATDEQAAGSEEVN---------AAIDEIAQVTQETAAMSEEISAAAEELSGLAEELKELVEQF 261 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q ss_pred H
Q 019120 169 Q 169 (346)
Q Consensus 169 ~ 169 (346)
+
T Consensus 262 ~ 262 (262)
T smart00283 262 K 262 (262)
T ss_pred C
No 495
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=23.44 E-value=3.5e+02 Score=28.99 Aligned_cols=24 Identities=8% Similarity=0.044 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019120 147 VAAKAESIHQYVETMKTAYLADQR 170 (346)
Q Consensus 147 LAArva~LHe~Ve~lKe~YL~~~R 170 (346)
|..+.+.+.++|+++.++...++.
T Consensus 95 ~saq~~dle~KIkeLEaE~~~Lk~ 118 (475)
T PRK13729 95 LNKQRGDDQRRIEKLGQDNAALAE 118 (475)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHH
Confidence 334555666667766666555544
No 496
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=23.44 E-value=3e+02 Score=32.74 Aligned_cols=68 Identities=24% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Q 019120 93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFV----------HVAAKAESIHQYVETMK 162 (346)
Q Consensus 93 V~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~Fv----------aLAArva~LHe~Ve~lK 162 (346)
+..||++-.+.++.++.|+++...... +.+.+-+..-+.++++.|| +|-=|-+.|-.++.+++
T Consensus 1270 ~~tf~~q~~eiq~n~~ll~~L~~tlD~-------S~~a~Kqk~di~kl~~~lv~kQKAYP~M~QlQ~ksealI~qLRelC 1342 (1439)
T PF12252_consen 1270 VKTFEEQEKEIQQNLQLLDKLEKTLDD-------SDTAQKQKEDIVKLNDFLVEKQKAYPAMVQLQFKSEALIIQLRELC 1342 (1439)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhcc-------hHHHHHHHHHHHHHHHHHHHHhhhchHHHHHhhhhHHHHHHHHHHH
Q ss_pred HHHHH
Q 019120 163 TAYLA 167 (346)
Q Consensus 163 e~YL~ 167 (346)
+.+.+
T Consensus 1343 ~~h~~ 1347 (1439)
T PF12252_consen 1343 EAHQD 1347 (1439)
T ss_pred HHhhH
No 497
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=23.37 E-value=8.4e+02 Score=26.44 Aligned_cols=88 Identities=13% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 019120 90 QQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIF-------FVHVAAKAESIHQYVETMK 162 (346)
Q Consensus 90 ~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~-------FvaLAArva~LHe~Ve~lK 162 (346)
.+.++++|+.++.+++...+.-..|..... .+++..-++.+-+- |.+.-.+++.|..+++.+|
T Consensus 163 ~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~----------~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~ 232 (555)
T TIGR03545 163 VETAEEIEKSLKAMQQKWKKRKKDLPNKQD----------LEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADK 232 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchh----------HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH-hcCCCCCccchhhHHHHHHHHHHhhc
Q 019120 163 TAYLADQR-RRGDGSDPFLEADRRETARQEAAAKR 196 (346)
Q Consensus 163 e~YL~~~R-r~GD~~DPFaEadr~Eaa~q~~aa~R 196 (346)
+.+..+.+ . +.++....++.+.-++
T Consensus 233 ~~i~~~~~~l---------~~~~~~~~~~~~~lk~ 258 (555)
T TIGR03545 233 QKIKSAKNDL---------QNDKKQLKADLAELKK 258 (555)
T ss_pred HHHHHHHHHH---------HHhHHHHHHHHHHHHh
No 498
>smart00076 IFabd Interferon alpha, beta and delta. Interferons produce antiviral and antiproliferative responses in cells. They are classified into five groups, all of them related but gamma-interferon.
Probab=23.32 E-value=2.7e+02 Score=24.09 Aligned_cols=51 Identities=14% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHH
Q 019120 94 ARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFF 144 (346)
Q Consensus 94 ~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~F 144 (346)
..+|+=+....+|+++||.+|.-..+....+.+....-.|.+-.+.++.|.
T Consensus 46 t~le~~l~~L~~Ql~~Le~Cl~~~~~~~~~~~~~~~~l~lk~YF~rI~~yL 96 (117)
T smart00076 46 TLLESLLNELHQQLNHLEACLKQEMEEEDTPLPRNTHLALRKYFQRIQLYL 96 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCccccchHHHHHHHHHHHHHH
No 499
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=23.20 E-value=2.1e+02 Score=29.75 Aligned_cols=98 Identities=16% Similarity=0.168 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHHHHHhhchHHHHHHhhhccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhccC
Q 019120 1 MERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLHPNAGSASSATAPSQASGATAAPSSTGQPASSSVVPVFDFYRG 80 (346)
Q Consensus 1 ~er~k~~~~~l~~~V~~~lrntE~Avrs~~~lr~rf~~~~~~~~~~~~~~~~~~g~~~~~~~~~qp~~~~~~pv~Dfys~ 80 (346)
++.+-..|+.-...+.+.+...|.-++.+..|+....+...+++ . .+......+.-+.|||..
T Consensus 76 l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~---------------~~~~~~~~~~~~~~~~~~ 138 (525)
T TIGR02231 76 LRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSA--K---------------RNEPDLKEWFQAFDFNGS 138 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc--c---------------cCCCCHHHHHHHHHHHHH
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 019120 81 LPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPD 119 (346)
Q Consensus 81 ~p~~Ps~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~ 119 (346)
- ..=...-+.+.|+++...++.|++||+.|.....
T Consensus 139 ~----~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 139 E----IERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 500
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=23.17 E-value=1.5e+02 Score=22.29 Aligned_cols=28 Identities=14% Similarity=0.380 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH--HhcCCCCCc
Q 019120 151 AESIHQYVETMKTAYLADQ--RRRGDGSDP 178 (346)
Q Consensus 151 va~LHe~Ve~lKe~YL~~~--Rr~GD~~DP 178 (346)
.+.|++++.+++.+|.++| ...|...||
T Consensus 8 ~~eL~~~l~~l~~elf~Lr~q~~~~~~~~~ 37 (57)
T cd00427 8 DEELQEKLDELKKELFNLRFQKATGQLENP 37 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCcCc
Done!