Query 019121
Match_columns 346
No_of_seqs 197 out of 589
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 06:51:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019121.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019121hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02577 DNase-RNase: Bifuncti 100.0 2.2E-34 4.7E-39 248.3 14.2 125 130-258 5-129 (135)
2 COG1259 Uncharacterized conser 100.0 1E-32 2.3E-37 243.1 15.2 126 130-258 10-135 (151)
3 PF02151 UVR: UvrB/uvrC motif; 95.7 0.007 1.5E-07 41.6 2.0 26 292-317 3-29 (36)
4 COG3880 Modulator of heat shoc 92.4 0.085 1.8E-06 48.4 2.2 28 290-317 135-163 (176)
5 TIGR00631 uvrb excinuclease AB 56.0 8 0.00017 42.1 2.5 25 293-317 625-650 (655)
6 PRK07883 hypothetical protein; 54.8 8.8 0.00019 40.9 2.5 25 293-317 408-433 (557)
7 PRK12306 uvrC excinuclease ABC 52.9 9.5 0.00021 40.6 2.4 25 293-317 194-219 (519)
8 PRK00558 uvrC excinuclease ABC 52.2 10 0.00022 40.9 2.4 25 293-317 204-229 (598)
9 PRK05298 excinuclease ABC subu 51.0 11 0.00023 40.9 2.4 26 292-317 614-640 (652)
10 PRK14666 uvrC excinuclease ABC 50.7 11 0.00024 41.5 2.5 26 293-318 203-229 (694)
11 PRK14667 uvrC excinuclease ABC 49.3 12 0.00027 40.2 2.5 26 293-318 201-227 (567)
12 PRK14672 uvrC excinuclease ABC 48.6 13 0.00027 41.1 2.5 25 293-317 207-232 (691)
13 PRK14670 uvrC excinuclease ABC 48.4 13 0.00028 40.1 2.5 26 293-318 179-205 (574)
14 TIGR00194 uvrC excinuclease AB 48.2 12 0.00027 40.2 2.3 26 293-318 196-222 (574)
15 PRK14668 uvrC excinuclease ABC 47.6 13 0.00027 40.1 2.3 25 293-317 201-226 (577)
16 PRK14671 uvrC excinuclease ABC 47.2 14 0.0003 40.2 2.5 26 293-318 217-243 (621)
17 PRK14669 uvrC excinuclease ABC 44.1 16 0.00035 39.7 2.5 26 293-318 205-231 (624)
18 PF14305 ATPgrasp_TupA: TupA-l 43.7 59 0.0013 30.9 6.0 48 172-219 172-221 (239)
19 PF13670 PepSY_2: Peptidase pr 40.4 1.4E+02 0.0031 23.3 6.8 48 179-230 29-76 (83)
20 COG0322 UvrC Nuclease subunit 36.4 25 0.00053 38.1 2.4 26 293-318 204-230 (581)
21 PF12386 Peptidase_C71: Pseudo 34.8 1.2E+02 0.0027 27.0 6.0 44 176-219 56-100 (142)
22 COG0556 UvrB Helicase subunit 33.4 33 0.00072 37.3 2.7 26 293-318 626-652 (663)
23 PF10130 PIN_2: PIN domain; I 29.9 40 0.00088 29.5 2.3 73 177-258 50-122 (133)
24 TIGR00638 Mop molybdenum-pteri 22.6 2.6E+02 0.0057 20.3 5.3 51 195-247 8-58 (69)
25 cd00571 UreE UreE urease acces 20.2 2.1E+02 0.0046 24.9 4.9 40 159-199 85-133 (136)
No 1
>PF02577 DNase-RNase: Bifunctional nuclease; InterPro: IPR003729 This entry describes proteins of unknown function. The structure has been determined for one member of this group, the hypothetical protein TM0160 from Thermotoga maritima, which was found to consist of a duplication of two beta(3)-alpha(2) structural repeats, forming a single barrel-like beta-sheet [].; PDB: 1SJ5_A 1VJL_A.
Probab=100.00 E-value=2.2e-34 Score=248.27 Aligned_cols=125 Identities=29% Similarity=0.476 Sum_probs=106.0
Q ss_pred cccCCCCCCCcEEEEEecCCCceEEEEEecchhHHHHHHHHccCCCCCCChHHHHHHHHHHhCCeEeEEEEEeeECCEEE
Q 019121 130 GGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYF 209 (346)
Q Consensus 130 ~gaLd~ya~~PvLVL~eedg~~r~LPI~I~eaeAiaIa~aL~g~~~~RPlTHDLL~evLe~lg~~V~~V~I~~l~dGvFy 209 (346)
|..++..+++|++||++++++ +.|||||+..||.+|+.++++.+++||+|||||.++++++|.++++|+|++++||+||
T Consensus 5 gi~~~~~~~~~vvlL~~~~~~-~~lpI~i~~~ea~~i~~~~~~~~~~RP~thdLl~~~l~~lg~~v~~V~I~~~~dg~f~ 83 (135)
T PF02577_consen 5 GISVDEPSGQPVVLLREEDGD-RVLPIWIGAFEAQAIALALEGEKPPRPLTHDLLSDLLEALGAEVERVVIDDLEDGVFY 83 (135)
T ss_dssp EEEEETTTTEEEEEEEETTSS-EEEEEE--HHHHHHHHHHHCT---SS--HHHHHHHHHHHTTEEEEEEEEEEEETTEEE
T ss_pred EEEEcCCCCceEEEEEEcCCC-EEEEEEECHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHcCCEEEEEEEEEEECCEEE
Confidence 445566677899999999987 6999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeecCccceEEEEeCChHHHHHHHHHcCCCEEEehhHHhhcCccc
Q 019121 210 AQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRV 258 (346)
Q Consensus 210 A~L~l~~~g~e~e~~~IDaRPSDAIALAlR~~~PIyV~e~Vl~~agI~v 258 (346)
|+|++++++ ++..+|+||||||+||+|+++||||+++|++++|+++
T Consensus 84 A~L~l~~~~---~~~~id~RpSDAiaLAl~~~~PI~v~~~vl~~~~~~~ 129 (135)
T PF02577_consen 84 ARLVLRQGG---EEIEIDARPSDAIALALRFGAPIYVSEEVLDEAGVPV 129 (135)
T ss_dssp EEEEEEETT---TEEEEEE-HHHHHHHHHHHT--EEEEHHHHHHH-EE-
T ss_pred EEEEEecCC---EEEEEECcHhHHHHHHHHhCCCEEEeHHHHhhcCCCC
Confidence 999999776 5889999999999999999999999999999999998
No 2
>COG1259 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1e-32 Score=243.05 Aligned_cols=126 Identities=27% Similarity=0.452 Sum_probs=116.0
Q ss_pred cccCCCCCCCcEEEEEecCCCceEEEEEecchhHHHHHHHHccCCCCCCChHHHHHHHHHHhCCeEeEEEEEeeECCEEE
Q 019121 130 GGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYF 209 (346)
Q Consensus 130 ~gaLd~ya~~PvLVL~eedg~~r~LPI~I~eaeAiaIa~aL~g~~~~RPlTHDLL~evLe~lg~~V~~V~I~~l~dGvFy 209 (346)
+.+++.-.+.|++++...+++++.|||||+..||.+|+.++++..++||+||||+.++++.++.++++|+|++++|||||
T Consensus 10 ~i~~~~~~~~~~~v~~~~~~~~~~lPI~Ig~~ea~si~~~l~~~~p~RP~tHdll~~i~~~l~~~v~kVvI~d~~d~tyy 89 (151)
T COG1259 10 GIFFVPVSSFPTVVLLLEGGDNRVLPIYIGASEALAIAKALEGVEPPRPLTHDLLVEIFEELGARVEKVVIDDLIDNTYY 89 (151)
T ss_pred EEEEecccCCceEEEEEEcCCCeEEEEEEeHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhCCcEEEEEEEEeccCeEE
Confidence 45566677888777776677768999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeecCccceEEEEeCChHHHHHHHHHcCCCEEEehhHHhhcCccc
Q 019121 210 AQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRV 258 (346)
Q Consensus 210 A~L~l~~~g~e~e~~~IDaRPSDAIALAlR~~~PIyV~e~Vl~~agI~v 258 (346)
|+|++++++ ....+|+||||||+||+|.|+||||.|+|+++++++.
T Consensus 90 A~L~~~~~~---~~~~iDaRPSDaI~LAlr~~~PI~V~e~v~~~a~~~~ 135 (151)
T COG1259 90 ATLILEQDD---GKIQIDARPSDAIALALRVGAPIYVAEEVLDEAEIEI 135 (151)
T ss_pred EEEEEEcCC---ceEEEecccchHHHHHHHhCCCEEEehhhhhhhcCcC
Confidence 999999987 3689999999999999999999999999999998887
No 3
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=95.70 E-value=0.007 Score=41.63 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHhh-hccHHHHhhcccc
Q 019121 292 EFNLVRNMLIAAV-EERYRDAGIFIFL 317 (346)
Q Consensus 292 e~elLremL~~Av-eEdYE~AA~lRd~ 317 (346)
.+..|++.+..|+ ++|||.|+.|||-
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~ 29 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQ 29 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 3567888888887 9999999999985
No 4
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=92.37 E-value=0.085 Score=48.41 Aligned_cols=28 Identities=11% Similarity=0.246 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHHHhh-hccHHHHhhcccc
Q 019121 290 TKEFNLVRNMLIAAV-EERYRDAGIFIFL 317 (346)
Q Consensus 290 ~~e~elLremL~~Av-eEdYE~AA~lRd~ 317 (346)
...+.+|++.|++.+ .||||.||.+||.
T Consensus 135 ~~~I~~L~e~Lq~~i~~EefEeAA~iRDq 163 (176)
T COG3880 135 KRKIIALKEALQDLIEREEFEEAAVIRDQ 163 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999 9999999999995
No 5
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=55.96 E-value=8 Score=42.07 Aligned_cols=25 Identities=8% Similarity=0.024 Sum_probs=19.1
Q ss_pred HHHHHHHHHHh-hhccHHHHhhcccc
Q 019121 293 FNLVRNMLIAA-VEERYRDAGIFIFL 317 (346)
Q Consensus 293 ~elLremL~~A-veEdYE~AA~lRd~ 317 (346)
++.|++.|.+| .+++||.||++||.
T Consensus 625 i~~l~~~M~~aa~~l~FE~Aa~~RD~ 650 (655)
T TIGR00631 625 IKQLEKEMKQAARNLEFEEAARLRDE 650 (655)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 35566655555 59999999999985
No 6
>PRK07883 hypothetical protein; Validated
Probab=54.79 E-value=8.8 Score=40.88 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=19.2
Q ss_pred HHHHHHHHHHh-hhccHHHHhhcccc
Q 019121 293 FNLVRNMLIAA-VEERYRDAGIFIFL 317 (346)
Q Consensus 293 ~elLremL~~A-veEdYE~AA~lRd~ 317 (346)
++.|++.|++| .+.+||.||++||.
T Consensus 408 ~~~l~~~M~~aa~~l~FE~Aa~~Rd~ 433 (557)
T PRK07883 408 LAALRARIDRLAAAERFEEAARLRDR 433 (557)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 35566655555 59999999999995
No 7
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=52.94 E-value=9.5 Score=40.57 Aligned_cols=25 Identities=4% Similarity=0.036 Sum_probs=19.2
Q ss_pred HHHHHHHHHHh-hhccHHHHhhcccc
Q 019121 293 FNLVRNMLIAA-VEERYRDAGIFIFL 317 (346)
Q Consensus 293 ~elLremL~~A-veEdYE~AA~lRd~ 317 (346)
++.|++.|++| .+.+||.||++||.
T Consensus 194 ~~~L~~~M~~aa~~l~FE~Aa~~RD~ 219 (519)
T PRK12306 194 IEKLEEEMAEKAKNQQFERALVIRDE 219 (519)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45566655555 59999999999996
No 8
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=52.18 E-value=10 Score=40.94 Aligned_cols=25 Identities=8% Similarity=0.044 Sum_probs=19.4
Q ss_pred HHHHHHHHHHh-hhccHHHHhhcccc
Q 019121 293 FNLVRNMLIAA-VEERYRDAGIFIFL 317 (346)
Q Consensus 293 ~elLremL~~A-veEdYE~AA~lRd~ 317 (346)
++.|++.|++| .+++||.||++||.
T Consensus 204 i~~L~~~M~~aa~~l~FE~Aa~~RD~ 229 (598)
T PRK00558 204 LKELEEKMEEASENLEFERAARYRDQ 229 (598)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 45566655555 59999999999996
No 9
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=50.99 E-value=11 Score=40.91 Aligned_cols=26 Identities=8% Similarity=0.014 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHhh-hccHHHHhhcccc
Q 019121 292 EFNLVRNMLIAAV-EERYRDAGIFIFL 317 (346)
Q Consensus 292 e~elLremL~~Av-eEdYE~AA~lRd~ 317 (346)
.++.|++.|.+|. +++||.||++||.
T Consensus 614 ~~~~l~~~M~~aa~~l~fE~Aa~~Rd~ 640 (652)
T PRK05298 614 LIKELEKQMKEAAKNLEFEEAARLRDE 640 (652)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4566777666665 9999999999996
No 10
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=50.66 E-value=11 Score=41.52 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhh-hccHHHHhhcccch
Q 019121 293 FNLVRNMLIAAV-EERYRDAGIFIFLS 318 (346)
Q Consensus 293 ~elLremL~~Av-eEdYE~AA~lRd~~ 318 (346)
++.|++.|++|. +.+||.||+|||.=
T Consensus 203 ~~~L~~~M~~AAe~l~FE~AA~lRD~i 229 (694)
T PRK14666 203 VDALRTEMEAASEALEFERAAVLRDQI 229 (694)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 456666666554 99999999999973
No 11
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=49.26 E-value=12 Score=40.17 Aligned_cols=26 Identities=4% Similarity=-0.063 Sum_probs=19.5
Q ss_pred HHHHHHHHHHh-hhccHHHHhhcccch
Q 019121 293 FNLVRNMLIAA-VEERYRDAGIFIFLS 318 (346)
Q Consensus 293 ~elLremL~~A-veEdYE~AA~lRd~~ 318 (346)
.+.|++.|++| .+.+||.||+|||.=
T Consensus 201 ~~~L~~~M~~aa~~l~FE~Aa~~RD~i 227 (567)
T PRK14667 201 LPELYDKIEEYSQKLMFEKAAVIRDQI 227 (567)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 35566555544 599999999999974
No 12
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=48.55 E-value=13 Score=41.06 Aligned_cols=25 Identities=12% Similarity=0.001 Sum_probs=19.0
Q ss_pred HHHHHHHHHHh-hhccHHHHhhcccc
Q 019121 293 FNLVRNMLIAA-VEERYRDAGIFIFL 317 (346)
Q Consensus 293 ~elLremL~~A-veEdYE~AA~lRd~ 317 (346)
++.|++.|++| -+.+||.||+|||.
T Consensus 207 l~~L~~~M~~AA~~l~FE~AA~lRD~ 232 (691)
T PRK14672 207 VARLEKRMKRAVRQEAFEAAARIRDD 232 (691)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 35566655555 59999999999995
No 13
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=48.41 E-value=13 Score=40.09 Aligned_cols=26 Identities=12% Similarity=0.034 Sum_probs=19.5
Q ss_pred HHHHHHHHHHh-hhccHHHHhhcccch
Q 019121 293 FNLVRNMLIAA-VEERYRDAGIFIFLS 318 (346)
Q Consensus 293 ~elLremL~~A-veEdYE~AA~lRd~~ 318 (346)
++.|++.|++| -+.+||.||+|||.=
T Consensus 179 ~~~L~~~M~~aa~~l~FE~Aa~~RD~i 205 (574)
T PRK14670 179 LSQIEIKMKEAIQKEDFEAAIKLKETK 205 (574)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 35566655555 599999999999974
No 14
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=48.25 E-value=12 Score=40.17 Aligned_cols=26 Identities=8% Similarity=-0.015 Sum_probs=19.4
Q ss_pred HHHHHHHHHHh-hhccHHHHhhcccch
Q 019121 293 FNLVRNMLIAA-VEERYRDAGIFIFLS 318 (346)
Q Consensus 293 ~elLremL~~A-veEdYE~AA~lRd~~ 318 (346)
.+.|++.|++| -+.+||.||++||.=
T Consensus 196 ~~~L~~~M~~aa~~l~FE~Aa~~Rd~i 222 (574)
T TIGR00194 196 IKELEQKMEKASENLEFEEAARIRDQI 222 (574)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 35566555555 599999999999973
No 15
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=47.60 E-value=13 Score=40.10 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhh-hccHHHHhhcccc
Q 019121 293 FNLVRNMLIAAV-EERYRDAGIFIFL 317 (346)
Q Consensus 293 ~elLremL~~Av-eEdYE~AA~lRd~ 317 (346)
++.|++.+++|. +.+||.||+|||.
T Consensus 201 ~~~l~~~m~~aa~~l~FE~Aa~~Rd~ 226 (577)
T PRK14668 201 ADPLRREMEAAAQAQEFERAANLRDR 226 (577)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 456777666555 9999999999996
No 16
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=47.21 E-value=14 Score=40.19 Aligned_cols=26 Identities=12% Similarity=0.084 Sum_probs=19.5
Q ss_pred HHHHHHHHHHh-hhccHHHHhhcccch
Q 019121 293 FNLVRNMLIAA-VEERYRDAGIFIFLS 318 (346)
Q Consensus 293 ~elLremL~~A-veEdYE~AA~lRd~~ 318 (346)
++.|++.|++| .+.+||.||+|||.=
T Consensus 217 ~~~L~~~M~~as~~l~FE~Aa~~RD~i 243 (621)
T PRK14671 217 IRSLTEEMQRAAAELKFEEAAELKDQI 243 (621)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 35566655555 599999999999974
No 17
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=44.15 E-value=16 Score=39.71 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=19.3
Q ss_pred HHHHHHHHH-HhhhccHHHHhhcccch
Q 019121 293 FNLVRNMLI-AAVEERYRDAGIFIFLS 318 (346)
Q Consensus 293 ~elLremL~-~AveEdYE~AA~lRd~~ 318 (346)
++.|++.|+ +|.+.+||.||+|||.=
T Consensus 205 ~~~L~~~M~~aa~~l~FE~Aa~~RD~i 231 (624)
T PRK14669 205 ARSLRARMEAAALEMQFELAAKYRDLI 231 (624)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 355555455 55599999999999974
No 18
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=43.73 E-value=59 Score=30.85 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=40.6
Q ss_pred cCCCCCCChHHHHHHHHHHhC--CeEeEEEEEeeECCEEEEEEEEeecCc
Q 019121 172 NVQIARPTLYQVVKEMIEKMG--YEVRLVRVTKRVHEAYFAQLYLTKVGN 219 (346)
Q Consensus 172 g~~~~RPlTHDLL~evLe~lg--~~V~~V~I~~l~dGvFyA~L~l~~~g~ 219 (346)
....+||-..+=|.++.+.|. ....||-.+...+++|+..|.+..+++
T Consensus 172 ~~~~~kP~~l~emi~iA~~Ls~~f~fvRVDlY~~~~~iyFGElTf~p~~G 221 (239)
T PF14305_consen 172 DEDIPKPKNLEEMIEIAEKLSKGFPFVRVDLYNVDGKIYFGELTFTPGAG 221 (239)
T ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEEEEEEeCCcEEEEeeecCCCCc
Confidence 467899999999999999994 556666668999999999999987654
No 19
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=40.45 E-value=1.4e+02 Score=23.32 Aligned_cols=48 Identities=19% Similarity=0.129 Sum_probs=34.3
Q ss_pred ChHHHHHHHHHHhCCeEeEEEEEeeECCEEEEEEEEeecCccceEEEEeCCh
Q 019121 179 TLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRP 230 (346)
Q Consensus 179 lTHDLL~evLe~lg~~V~~V~I~~l~dGvFyA~L~l~~~g~e~e~~~IDaRP 230 (346)
++.+=+...++..|++|.+|.+++ +|.|-.+....+|.. -.+.+|.+.
T Consensus 29 ~~~~~~~~~l~~~G~~v~~ve~~~--~g~yev~~~~~dG~~--~ev~vD~~t 76 (83)
T PF13670_consen 29 LSIEQAVAKLEAQGYQVREVEFDD--DGCYEVEARDKDGKK--VEVYVDPAT 76 (83)
T ss_pred CCHHHHHHHHHhcCCceEEEEEcC--CCEEEEEEEECCCCE--EEEEEcCCC
Confidence 457777888888999999999864 788999966654431 455566543
No 20
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=36.44 E-value=25 Score=38.11 Aligned_cols=26 Identities=8% Similarity=-0.019 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhh-hccHHHHhhcccch
Q 019121 293 FNLVRNMLIAAV-EERYRDAGIFIFLS 318 (346)
Q Consensus 293 ~elLremL~~Av-eEdYE~AA~lRd~~ 318 (346)
+..|++.+++|. +.|||.||++||.=
T Consensus 204 ~~~L~~~M~~As~~l~FE~Aa~~RD~i 230 (581)
T COG0322 204 LQELEEKMEEASENLDFERAARLRDQI 230 (581)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 466777666665 99999999999964
No 21
>PF12386 Peptidase_C71: Pseudomurein endo-isopeptidase Pei; InterPro: IPR022119 This peptidase has the catalytic triad C-H-D at the C-terminal end, a triad similar to that in thiol proteases and animal transglutaminases. It catalyses the in vitro lysis of M. marburgensis cells under reducing conditions and exhibits characteristics of metal-activated peptidases.
Probab=34.80 E-value=1.2e+02 Score=27.05 Aligned_cols=44 Identities=20% Similarity=0.337 Sum_probs=34.7
Q ss_pred CCCChHHHHHHHHHHhCCeEeEEEEEee-ECCEEEEEEEEeecCc
Q 019121 176 ARPTLYQVVKEMIEKMGYEVRLVRVTKR-VHEAYFAQLYLTKVGN 219 (346)
Q Consensus 176 ~RPlTHDLL~evLe~lg~~V~~V~I~~l-~dGvFyA~L~l~~~g~ 219 (346)
.--..-+|+..+++.||+.|.-+.+.-. .+|+.|..+.|+-.+.
T Consensus 56 NCtD~~Qlf~~v~~~lGY~Vq~~HVk~rc~~g~wygH~~LRv~~~ 100 (142)
T PF12386_consen 56 NCTDACQLFYRVIESLGYDVQFEHVKCRCNSGKWYGHYRLRVKHK 100 (142)
T ss_pred CchhHHHHHHHHHHhcCceEEEEEEEEEecCCceeeEEEEEecce
Confidence 3445678999999999998776666433 6999999999987663
No 22
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=33.36 E-value=33 Score=37.30 Aligned_cols=26 Identities=15% Similarity=0.041 Sum_probs=19.8
Q ss_pred HHHHHH-HHHHhhhccHHHHhhcccch
Q 019121 293 FNLVRN-MLIAAVEERYRDAGIFIFLS 318 (346)
Q Consensus 293 ~elLre-mL~~AveEdYE~AA~lRd~~ 318 (346)
++.|++ |.++|.+-+||.||++||.=
T Consensus 626 I~~Le~~M~~aA~~l~FE~Aa~lRD~i 652 (663)
T COG0556 626 IKKLEKEMKEAAKNLEFEEAARLRDEI 652 (663)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455665 55566699999999999964
No 23
>PF10130 PIN_2: PIN domain; InterPro: IPR019298 This entry represents a set of bacterial and archaeal proteins that are predicted to be RNases (from similarities to 5'-exonucleases).
Probab=29.85 E-value=40 Score=29.48 Aligned_cols=73 Identities=11% Similarity=0.125 Sum_probs=41.3
Q ss_pred CCChHHHHHHHHHHhCCeEeEEEEEeeECCEEEEEEEEeecCccceEEEEeCChHHHHHHHHHcCCCEEEehhHHhhcCc
Q 019121 177 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGM 256 (346)
Q Consensus 177 RPlTHDLL~evLe~lg~~V~~V~I~~l~dGvFyA~L~l~~~g~e~e~~~IDaRPSDAIALAlR~~~PIyV~e~Vl~~agI 256 (346)
+-++-+-+.+++..+- ..|.|. ..+.|. =+..+.. .....+|-.=-.-+|||+..++||+..++=+-..|+
T Consensus 50 ~~l~~~~~~~~l~~l~---~~I~iv--~~~~~~--~~~~~A~--~~~~~~D~~D~p~vALaL~l~~~IWT~Dkdl~~~Gl 120 (133)
T PF10130_consen 50 SKLSEEELEEVLNILF---SRIKIV--PEEIYS--ENIEEAR--EIIRDRDPDDWPFVALALQLNAPIWTEDKDLFGSGL 120 (133)
T ss_pred hCCCHHHHHHHHHHHH---hheEEe--cHHHhH--HHHHHHH--HHhcCCCcchHHHHHHHHHcCCCeecCcHHHHhcCc
Confidence 4456666667777662 223332 234443 1111111 011224555555799999999999999987766665
Q ss_pred cc
Q 019121 257 RV 258 (346)
Q Consensus 257 ~v 258 (346)
.-
T Consensus 121 ~~ 122 (133)
T PF10130_consen 121 AT 122 (133)
T ss_pred ch
Confidence 53
No 24
>TIGR00638 Mop molybdenum-pterin binding domain. This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins.
Probab=22.59 E-value=2.6e+02 Score=20.34 Aligned_cols=51 Identities=8% Similarity=-0.050 Sum_probs=38.9
Q ss_pred EeEEEEEeeECCEEEEEEEEeecCccceEEEEeCChHHHHHHHHHcCCCEEEe
Q 019121 195 VRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVN 247 (346)
Q Consensus 195 V~~V~I~~l~dGvFyA~L~l~~~g~e~e~~~IDaRPSDAIALAlR~~~PIyV~ 247 (346)
....+|.++..+...+++.+.-+++ ..+.-..-+..+-.|+++-|-|+|+.
T Consensus 8 ~l~g~I~~i~~~g~~~~v~l~~~~~--~~l~a~i~~~~~~~l~l~~G~~v~~~ 58 (69)
T TIGR00638 8 QLKGKVVAIEDGDVNAEVDLLLGGG--TKLTAVITLESVAELGLKPGKEVYAV 58 (69)
T ss_pred EEEEEEEEEEECCCeEEEEEEECCC--CEEEEEecHHHHhhCCCCCCCEEEEE
Confidence 3456777777777788888887653 25666777888899999999999876
No 25
>cd00571 UreE UreE urease accessory protein. UreE is a metallochaperone assisting the insertion of a Ni2+ ion in the active site of urease, an important step in the in vivo assembly of urease, an enzyme that hydrolyses urea into ammonia and carbamic acid. The C-terminal region of UreE contains a histidine rich nickel binding site.
Probab=20.19 E-value=2.1e+02 Score=24.90 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=24.0
Q ss_pred cchhHHHHHHHHccCCCCC---------CChHHHHHHHHHHhCCeEeEEE
Q 019121 159 LEMPSVLLMAAMRNVQIAR---------PTLYQVVKEMIEKMGYEVRLVR 199 (346)
Q Consensus 159 ~eaeAiaIa~aL~g~~~~R---------PlTHDLL~evLe~lg~~V~~V~ 199 (346)
...++..++..++|+..|= |. -..+.++++++|..+.++.
T Consensus 85 ~~~~~~~l~y~lGNrH~pl~i~~~~l~v~~-D~~l~~ml~~lg~~~~~~~ 133 (136)
T cd00571 85 DMLELARLAYHLGNRHVPLQIEEDELYIPY-DHVLEDMLRKLGVRYERVE 133 (136)
T ss_pred CHHHHHHHHHHhcCCccceEEeCCEEEEcC-CHHHHHHHHHcCCeeEEEe
Confidence 3445555566666543211 11 4567799999998877664
Done!