BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019122
         (346 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1T71|A Chain A, Crystal Structure Of A Novel Phosphatase Mycoplasma
           Pneumoniaefrom
          Length = 281

 Score = 30.8 bits (68), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 127 GFGSLLQLNCGRLKRNLCGWLVEKIDIARCILQLNGV--EVELSPK 170
           GFGS++  N  +  R  C    E  ++++C  QLNGV  EV+++ K
Sbjct: 210 GFGSVIGANPEQSIRLFCAGSREHFEVSKCGAQLNGVFFEVDVNTK 255


>pdb|4I62|A Chain A, 1.05 Angstrom Crystal Structure Of An Amino Acid Abc
           Transporter Substrate-Binding Protein From Streptococcus
           Pneumoniae Canada Mdr_19a Bound To L-Arginine
          Length = 269

 Score = 30.4 bits (67), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 151 IDIARCILQLNGVEVELSPKSFSYVMGISDGGK 183
           I++A+ I    GVE+ELSP SF  V+     GK
Sbjct: 69  IELAKAIATELGVELELSPMSFDNVLASVQSGK 101


>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
           Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
           A Resolution
 pdb|1VRD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
           Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
           A Resolution
          Length = 494

 Score = 30.0 bits (66), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 10/95 (10%)

Query: 57  ACITKEIRKE--IGSTYKNLPPEEKCRYKSEAKRVGKSKIGKAKFPTRCAPDRLAAAVLQ 114
           A + K + +E  IG  +KNL P+E+ R  S  K   K++ G    P    PD      + 
Sbjct: 63  AALAKALAREGGIGIIHKNLTPDEQARQVSIVK---KTENGIIYDPITVTPDMTVKEAID 119

Query: 115 LTDEQRV----VVREMG-FGSLLQLNCGRLKRNLC 144
           L  E ++    VV E G    LL     R ++NL 
Sbjct: 120 LMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEKNLS 154


>pdb|3CTZ|A Chain A, Structure Of Human Cytosolic X-Prolyl Aminopeptidase
          Length = 623

 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 25/134 (18%)

Query: 140 KRNLCGWLVEKIDIARCILQLNGVEVELSPKSFSY-------VMGISDGGKPLQLEGESS 192
           +RN+  ++V  +D    +  L G +VE +P  FSY       +M   DG +   ++  S 
Sbjct: 191 ERNVMWFVVTALDEIAWLFNLRGSDVEHNPVFFSYAIIGLETIMLFIDGDR---IDAPSV 247

Query: 193 EVCAYVDNFTPTSRGINITVLAGILQKLKSADDQFKVTFMMFALCTILCPPGGVHISSGF 252
           +    +D        I +     IL +LK             ALC  L P   V +S   
Sbjct: 248 KEHLLLDLGLEAEYRIQVHPYKSILSELK-------------ALCADLSPREKVWVSDKA 294

Query: 253 LFSLKDVESIPKRN 266
            +++   E+IPK +
Sbjct: 295 SYAVS--ETIPKDH 306


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,375,402
Number of Sequences: 62578
Number of extensions: 415096
Number of successful extensions: 907
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 905
Number of HSP's gapped (non-prelim): 4
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)