BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019122
         (346 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q7Z5L2|R3HCL_HUMAN R3H and coiled-coil domain-containing protein 1-like OS=Homo
           sapiens GN=R3HCC1L PE=2 SV=2
          Length = 792

 Score = 38.1 bits (87), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 14/99 (14%)

Query: 169 PKSFSYVMGISDGGKPLQLEGESSEVCAYVDN----FTPTSRGINITVLAGILQKLKSAD 224
           P+ FS VM   +   P++L  +S  V   +        P+S GI  T + G      S D
Sbjct: 221 PRVFSSVMKPENMIVPIKLSSDSEIVQQSMQTSDGILNPSSGGITTTSVPG------SPD 274

Query: 225 DQFKVTFMMFALCTILCPPGGVHISSGFLFSLKDVESIP 263
             F  T + F + ++    GG+  S+GF+   KD +SIP
Sbjct: 275 GVFDQTCVDFEVESV----GGIANSTGFILDQKDTDSIP 309


>sp|Q9DC33|HM20A_MOUSE High mobility group protein 20A OS=Mus musculus GN=Hmg20a PE=2 SV=1
          Length = 346

 Score = 37.7 bits (86), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 38  GFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKR 88
           G++R+  E   Q++A         EI + +G+ +  LPPEEK RY  EA R
Sbjct: 108 GYVRFMNERREQLRAKRPEVPFP-EITRMLGNEWSKLPPEEKQRYLDEADR 157


>sp|Q9NP66|HM20A_HUMAN High mobility group protein 20A OS=Homo sapiens GN=HMG20A PE=1 SV=1
          Length = 347

 Score = 37.7 bits (86), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 38  GFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKR 88
           G++R+  E   Q++A         EI + +G+ +  LPPEEK RY  EA R
Sbjct: 109 GYVRFMNERREQLRAKRPEVPFP-EITRMLGNEWSKLPPEEKQRYLDEADR 158


>sp|Q5ZKF4|HM20A_CHICK High mobility group protein 20A OS=Gallus gallus GN=HMG20A PE=2
           SV=1
          Length = 348

 Score = 37.4 bits (85), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 38  GFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKR 88
           G++R+  E   Q++A         EI + +G+ +  LPPEEK RY  EA R
Sbjct: 110 GYVRFMNERREQLRAKRPEVPFP-EITRMLGNEWSKLPPEEKRRYLDEADR 159


>sp|O67813|FLHB_AQUAE Flagellar biosynthetic protein FlhB OS=Aquifex aeolicus (strain
           VF5) GN=flhB PE=1 SV=1
          Length = 350

 Score = 32.0 bits (71), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 9/122 (7%)

Query: 64  RKEIGSTYKNLP--PEEKCRYKSEAKRVGKSKIGKAKFPTRCA----PDRLAAAVLQLTD 117
           R+E+   YK L   PE K R K+  + + KS++  A+ P        P  +A A+    +
Sbjct: 218 RRELKEEYKQLEGHPEVKSRIKARMRELAKSRMM-AEVPKATVVITNPTHIAIALKYNPE 276

Query: 118 EQRV-VVREMGFGSLLQLNCGRLKRNLCGWLVEKIDIARCILQLNGVEVELSPKSFSYVM 176
           + +  VV   G G++ Q     +  N    +V K ++AR +     V  E+SPK +  V 
Sbjct: 277 KDKAPVVVAKGKGTIAQ-KIVEIAENYSIPVVRKPELARALYPAVEVGKEISPKFYKAVA 335

Query: 177 GI 178
            I
Sbjct: 336 EI 337


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.139    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,831,653
Number of Sequences: 539616
Number of extensions: 5435961
Number of successful extensions: 10066
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 10063
Number of HSP's gapped (non-prelim): 8
length of query: 346
length of database: 191,569,459
effective HSP length: 118
effective length of query: 228
effective length of database: 127,894,771
effective search space: 29160007788
effective search space used: 29160007788
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)