Query 019122
Match_columns 346
No_of_seqs 150 out of 310
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 11:15:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019122.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019122hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l8y_A Upstream binding factor 99.4 1.6E-13 5.6E-18 107.8 3.1 65 29-95 2-66 (91)
2 2eqz_A High mobility group pro 99.3 7.5E-13 2.6E-17 103.1 3.7 69 26-94 10-79 (86)
3 2d7l_A WD repeat and HMG-box D 99.3 2.5E-12 8.5E-17 99.3 5.3 63 28-90 2-64 (81)
4 1aab_A High mobility group pro 99.3 5E-13 1.7E-17 103.3 1.3 69 27-95 3-72 (83)
5 1hme_A High mobility group pro 99.3 1.6E-12 5.4E-17 98.9 2.8 67 27-94 2-68 (77)
6 1hry_A Human SRY; DNA, DNA-bin 99.3 1.4E-12 4.7E-17 99.0 2.4 66 28-94 1-66 (76)
7 2crj_A SWI/SNF-related matrix- 99.3 2.5E-12 8.6E-17 101.4 3.8 68 26-94 2-69 (92)
8 2cs1_A PMS1 protein homolog 1; 99.3 3.3E-12 1.1E-16 100.7 4.4 69 26-95 2-70 (92)
9 1wgf_A Upstream binding factor 99.3 2.5E-12 8.4E-17 101.1 3.7 70 26-96 15-84 (90)
10 2e6o_A HMG box-containing prot 99.2 2.9E-12 9.9E-17 100.0 2.4 68 26-94 12-79 (87)
11 1wz6_A HMG-box transcription f 99.2 4.8E-12 1.6E-16 97.5 3.6 70 26-96 2-71 (82)
12 1ckt_A High mobility group 1 p 99.2 4.4E-12 1.5E-16 94.9 2.9 64 31-94 1-65 (71)
13 2co9_A Thymus high mobility gr 99.2 8.6E-12 2.9E-16 100.3 4.3 67 27-94 13-79 (102)
14 4a3n_A Transcription factor SO 99.2 4.4E-12 1.5E-16 94.7 2.4 65 30-95 1-65 (71)
15 1j46_A SRY, sex-determining re 99.2 1.1E-11 3.9E-16 96.1 4.4 67 28-95 1-67 (85)
16 1k99_A Upstream binding factor 99.2 4.8E-12 1.6E-16 101.2 2.0 67 26-93 5-71 (99)
17 3fgh_A Transcription factor A, 99.2 5.7E-12 2E-16 93.4 1.9 60 30-94 1-60 (67)
18 3f27_D Transcription factor SO 99.2 9.6E-12 3.3E-16 95.9 2.6 68 27-95 2-69 (83)
19 1i11_A Transcription factor SO 99.2 1.7E-11 6E-16 94.1 4.0 66 29-95 2-67 (81)
20 4euw_A Transcription factor SO 99.1 2.6E-11 9E-16 98.1 4.1 75 20-95 18-92 (106)
21 2cto_A Novel protein; high mob 99.1 5.7E-12 2E-16 99.6 0.1 68 26-96 5-75 (93)
22 1gt0_D Transcription factor SO 99.1 3.1E-11 1.1E-15 92.5 4.0 65 30-95 1-65 (80)
23 2lef_A LEF-1 HMG, protein (lym 99.1 3.9E-11 1.3E-15 93.2 4.1 65 30-95 1-65 (86)
24 2lhj_A High mobility group pro 99.1 1.1E-11 3.8E-16 98.6 0.8 69 26-94 17-86 (97)
25 1cg7_A Protein (NON histone pr 99.1 7.4E-12 2.5E-16 98.9 -0.8 68 26-94 15-82 (93)
26 1wxl_A Single-strand recogniti 99.1 3.8E-11 1.3E-15 90.4 3.1 64 29-95 1-64 (73)
27 2yuk_A Myeloid/lymphoid or mix 99.1 4.9E-12 1.7E-16 99.3 -2.5 64 28-95 19-83 (90)
28 3nm9_A HMG-D, high mobility gr 99.1 4.2E-11 1.5E-15 90.2 2.4 63 29-94 1-63 (73)
29 3u2b_C Transcription factor SO 99.1 5.3E-11 1.8E-15 90.8 2.9 65 30-95 1-65 (79)
30 1v63_A Nucleolar transcription 99.0 2E-10 6.7E-15 92.2 5.8 84 26-125 3-88 (101)
31 1v64_A Nucleolar transcription 99.0 1.1E-10 3.9E-15 94.7 4.4 81 27-123 12-93 (108)
32 2gzk_A Sex-determining region 99.0 1.4E-10 4.6E-15 100.1 3.0 68 26-94 83-150 (159)
33 2yrq_A High mobility group pro 99.0 2.3E-10 7.9E-15 100.1 3.2 68 27-94 11-79 (173)
34 2yrq_A High mobility group pro 98.9 4.1E-10 1.4E-14 98.5 2.9 67 27-94 97-163 (173)
35 3tq6_A Transcription factor A, 98.9 7.6E-10 2.6E-14 100.3 3.8 85 25-121 3-87 (214)
36 3tmm_A Transcription factor A, 98.9 1E-09 3.6E-14 100.9 4.2 84 25-120 35-118 (238)
37 3tq6_A Transcription factor A, 98.7 5.8E-10 2E-14 101.1 -1.4 63 27-94 110-172 (214)
38 3tmm_A Transcription factor A, 98.7 1.1E-09 3.8E-14 100.8 -2.0 63 27-94 142-204 (238)
39 2gzk_A Sex-determining region 98.6 1.7E-08 5.8E-13 86.9 2.8 65 29-94 2-66 (159)
40 2w9y_A CE-FAR-7, fatty acid/re 43.6 24 0.00084 29.1 4.2 81 44-125 49-133 (140)
41 1ois_A DNA topoisomerase I; DN 25.2 31 0.0011 30.6 2.1 42 41-82 65-119 (223)
No 1
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.37 E-value=1.6e-13 Score=107.79 Aligned_cols=65 Identities=15% Similarity=0.036 Sum_probs=60.5
Q ss_pred CCCCccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHhccCCCCCChhhhhhhhHHhhhccccccC
Q 019122 29 GGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKIG 95 (346)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~~ 95 (346)
.|.||||+||||.|+.+||+.|++.+|+ .+.+|+|++|+.|++||++||.+|.+.|++.+..|..
T Consensus 2 ~~kPKrP~SAy~lf~~~~r~~~k~~~p~--~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYek 66 (91)
T 1l8y_A 2 GKLPESPKRAEEIWQQSVIGDYLARFKN--DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYER 66 (91)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHHTTS--THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999998 6799999999999999999999999999998877754
No 2
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=7.5e-13 Score=103.08 Aligned_cols=69 Identities=13% Similarity=0.153 Sum_probs=64.1
Q ss_pred CCCCCCCccCCcchhhhhHHHHHHHHhcCCCcch-HHHHHHHhccCCCCCChhhhhhhhHHhhhcccccc
Q 019122 26 SNDGGRKRQCRNGFIRYFGEVVRQIKANDGMACI-TKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKI 94 (346)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~ 94 (346)
-.||++||||++||+.|+.+.|.++++.||+..+ ..++.|.+|+.|++||++||.+|.+.|++...+|.
T Consensus 10 ~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~ 79 (86)
T 2eqz_A 10 KGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYD 79 (86)
T ss_dssp SCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999875 79999999999999999999999999999877764
No 3
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2.5e-12 Score=99.26 Aligned_cols=63 Identities=21% Similarity=0.230 Sum_probs=59.5
Q ss_pred CCCCCccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHhccCCCCCChhhhhhhhHHhhhcc
Q 019122 28 DGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVG 90 (346)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~ 90 (346)
++|+||||.+|||.|+.+.|.++++.||+...+.+|.|.+|+.|++||++||.+|.+.|+...
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d~ 64 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGET 64 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999987658999999999999999999999999999864
No 4
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.28 E-value=5e-13 Score=103.31 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=63.9
Q ss_pred CCCCCCccCCcchhhhhHHHHHHHHhcCCCcch-HHHHHHHhccCCCCCChhhhhhhhHHhhhccccccC
Q 019122 27 NDGGRKRQCRNGFIRYFGEVVRQIKANDGMACI-TKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKIG 95 (346)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~~ 95 (346)
.|||+||||.+||+.|+.++|.++++.||+..+ ..++.|.+|+.|++||++||.+|.+.|++.+.+|..
T Consensus 3 kdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~ 72 (83)
T 1aab_A 3 GDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 72 (83)
T ss_dssp CCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999998764 789999999999999999999999999998877743
No 5
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.26 E-value=1.6e-12 Score=98.94 Aligned_cols=67 Identities=16% Similarity=0.297 Sum_probs=62.4
Q ss_pred CCCCCCccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHhccCCCCCChhhhhhhhHHhhhcccccc
Q 019122 27 NDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKI 94 (346)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~ 94 (346)
.|||+||||+|||+.|+.+.|.++++.+|+ ..+.+|.+.+|..|++||++||.+|.+.|++...+|.
T Consensus 2 kdp~~pKrP~saf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~ 68 (77)
T 1hme_A 2 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYE 68 (77)
T ss_dssp CCSSCCCCCCCTTHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999997 4688999999999999999999999999999877764
No 6
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.26 E-value=1.4e-12 Score=99.04 Aligned_cols=66 Identities=23% Similarity=0.297 Sum_probs=59.8
Q ss_pred CCCCCccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHhccCCCCCChhhhhhhhHHhhhcccccc
Q 019122 28 DGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKI 94 (346)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~ 94 (346)
|||++|||+|||+.|+.+.|.++++.+|+. .+.++.|.+|..|++||+++|.+|.++|++.+.+|.
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~ 66 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHR 66 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCC-SSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999974 577999999999999999999999999999877764
No 7
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.25 E-value=2.5e-12 Score=101.38 Aligned_cols=68 Identities=26% Similarity=0.427 Sum_probs=63.4
Q ss_pred CCCCCCCccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHhccCCCCCChhhhhhhhHHhhhcccccc
Q 019122 26 SNDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKI 94 (346)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~ 94 (346)
+.||+.||||++||+.|+.+.|.++++.||+. .+.+|.|.+|..|++||+++|.+|.+.|++...+|.
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~ 69 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDL-PFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYL 69 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999985 588999999999999999999999999999877764
No 8
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=3.3e-12 Score=100.71 Aligned_cols=69 Identities=14% Similarity=0.142 Sum_probs=64.1
Q ss_pred CCCCCCCccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHhccCCCCCChhhhhhhhHHhhhccccccC
Q 019122 26 SNDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKIG 95 (346)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~~ 95 (346)
+.||+.||||.+||+.|+.+.|.++++.||+. .+.++.|.+|+.|++||++||.+|.+.|++.+.+|..
T Consensus 2 ~~~p~~pKrP~say~lF~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~ 70 (92)
T 2cs1_A 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPKT-SLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNS 70 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCCSS-CHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999986 5789999999999999999999999999998887753
No 9
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.25 E-value=2.5e-12 Score=101.07 Aligned_cols=70 Identities=13% Similarity=0.239 Sum_probs=65.6
Q ss_pred CCCCCCCccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHhccCCCCCChhhhhhhhHHhhhccccccCC
Q 019122 26 SNDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKIGK 96 (346)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~~~ 96 (346)
-.|||+||||++|||.|+.+.|.++++.||+ ..+.++.|.+|+.|++||++||.+|.+.|++.+.+|...
T Consensus 15 ~kdp~~pKrP~say~lF~~~~r~~~k~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e 84 (90)
T 1wgf_A 15 KGGSEKPKRPVSAMFIFSEEKRRQLQEERPE-LSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERK 84 (90)
T ss_dssp SSCCCCCCCCCCHHHHHHHHTHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999998 568899999999999999999999999999999998654
No 10
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.22 E-value=2.9e-12 Score=100.01 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=62.9
Q ss_pred CCCCCCCccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHhccCCCCCChhhhhhhhHHhhhcccccc
Q 019122 26 SNDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKI 94 (346)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~ 94 (346)
..|||+||||++|||.|+.++|.++++.+|+ ..+.+|.|.+|+.|++||++||.+|.++|++.+.+|.
T Consensus 12 ~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~ 79 (87)
T 2e6o_A 12 ATSPNKCKRPMNAFMLFAKKYRVEYTQMYPG-KDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQK 79 (87)
T ss_dssp CCCCSSCCCCCCHHHHHHHHTHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999997 4688999999999999999999999999999877764
No 11
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.22 E-value=4.8e-12 Score=97.54 Aligned_cols=70 Identities=17% Similarity=0.213 Sum_probs=64.5
Q ss_pred CCCCCCCccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHhccCCCCCChhhhhhhhHHhhhccccccCC
Q 019122 26 SNDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKIGK 96 (346)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~~~ 96 (346)
+.|+++||||++||+.|+.++|.++++.+|+ ..+.+|.|.+|..|++||++||.+|.+.|++.+.+|...
T Consensus 2 ~~~~~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~ 71 (82)
T 1wz6_A 2 SSGSSGARRPMNAFLLFCKRHRSLVRQEHPR-LDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKA 71 (82)
T ss_dssp CSSCCCSCCCCCHHHHHHHHHHHHHHHHCSS-SCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999997 457899999999999999999999999999988888653
No 12
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.21 E-value=4.4e-12 Score=94.89 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=59.4
Q ss_pred CCccCCcchhhhhHHHHHHHHhcCCCcc-hHHHHHHHhccCCCCCChhhhhhhhHHhhhcccccc
Q 019122 31 RKRQCRNGFIRYFGEVVRQIKANDGMAC-ITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKI 94 (346)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~ 94 (346)
+||||+|||+.|+.+.|.++++.||+.. ...++.|.+|+.|++||+++|.+|.+.|++.+.+|.
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~ 65 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 65 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHH
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999877 479999999999999999999999999999877663
No 13
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.20 E-value=8.6e-12 Score=100.25 Aligned_cols=67 Identities=21% Similarity=0.310 Sum_probs=62.9
Q ss_pred CCCCCCccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHhccCCCCCChhhhhhhhHHhhhcccccc
Q 019122 27 NDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKI 94 (346)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~ 94 (346)
.|||+||||++|||.|+.++|.++++.||+. .+.+|.|.+|..|++||+++|.+|.+.|++.+.+|.
T Consensus 13 kdp~~pKrP~say~lF~~~~r~~i~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~ 79 (102)
T 2co9_A 13 KDPNEPQKPVSAYALFFRDTQAAIKGQNPNA-TFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYL 79 (102)
T ss_dssp CCCCSCCCCCCHHHHTHHHHHHHHHHHCTTS-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999986 588999999999999999999999999999887764
No 14
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.19 E-value=4.4e-12 Score=94.74 Aligned_cols=65 Identities=22% Similarity=0.345 Sum_probs=56.9
Q ss_pred CCCccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHhccCCCCCChhhhhhhhHHhhhccccccC
Q 019122 30 GRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKIG 95 (346)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~~ 95 (346)
|++|||+|||+.|+.++|.++++.+|+.. +.++.|.+|..|++||+++|.+|.++|++.+.+|..
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~ 65 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDLH-NAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQ 65 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999865 789999999999999999999999999998877653
No 15
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.19 E-value=1.1e-11 Score=96.12 Aligned_cols=67 Identities=22% Similarity=0.289 Sum_probs=62.0
Q ss_pred CCCCCccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHhccCCCCCChhhhhhhhHHhhhccccccC
Q 019122 28 DGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKIG 95 (346)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~~ 95 (346)
.||.||||+||||.|+.+++.++++.+|+. .+.+|.|.+|..|++||++||.+|.+.|++...+|..
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~ 67 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHRE 67 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999999999975 6889999999999999999999999999998877754
No 16
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.18 E-value=4.8e-12 Score=101.24 Aligned_cols=67 Identities=16% Similarity=0.249 Sum_probs=62.5
Q ss_pred CCCCCCCccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHhccCCCCCChhhhhhhhHHhhhccccc
Q 019122 26 SNDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSK 93 (346)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~ 93 (346)
-.||+.||||+||||.|+.+.|.++++.+|+. .+.+|.|.+|..|++||++||.+|.++|++...+|
T Consensus 5 ~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y 71 (99)
T 1k99_A 5 KKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEM-SNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEF 71 (99)
T ss_dssp CSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTS-CSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999985 58899999999999999999999999999988874
No 17
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.17 E-value=5.7e-12 Score=93.36 Aligned_cols=60 Identities=25% Similarity=0.340 Sum_probs=55.9
Q ss_pred CCCccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHhccCCCCCChhhhhhhhHHhhhcccccc
Q 019122 30 GRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKI 94 (346)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~ 94 (346)
|+||||+|||+.|+.+.|.++++.|| .++.|.+|+.|++||++||.+|.+.|++.+.+|.
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~ 60 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYH 60 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999887 5999999999999999999999999999877763
No 18
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.15 E-value=9.6e-12 Score=95.92 Aligned_cols=68 Identities=21% Similarity=0.301 Sum_probs=58.9
Q ss_pred CCCCCCccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHhccCCCCCChhhhhhhhHHhhhccccccC
Q 019122 27 NDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKIG 95 (346)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~~ 95 (346)
..++++|||++|||.|+.++|.++++.||+.. ..+|.|.+|..|++||++||.+|.+.|++.+..|..
T Consensus 2 ~~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~ 69 (83)
T 3f27_D 2 SFTSRIRRPMNAFMVWAKDERKRLAQQNPDLH-NAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQ 69 (83)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHHHHCSSSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999865 789999999999999999999999999998877753
No 19
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.15 E-value=1.7e-11 Score=94.13 Aligned_cols=66 Identities=23% Similarity=0.266 Sum_probs=60.3
Q ss_pred CCCCccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHhccCCCCCChhhhhhhhHHhhhccccccC
Q 019122 29 GGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKIG 95 (346)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~~ 95 (346)
+|.+|||++|||.|+.+++.++++.+|+. .+.+|.|.+|..|++||++||.+|.+.|++...+|..
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~ 67 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDM-HNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLE 67 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSC-CHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999975 4889999999999999999999999999998877754
No 20
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.12 E-value=2.6e-11 Score=98.09 Aligned_cols=75 Identities=17% Similarity=0.220 Sum_probs=60.7
Q ss_pred eEeeccCCCCCCCccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHhccCCCCCChhhhhhhhHHhhhccccccC
Q 019122 20 VVGVDASNDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKIG 95 (346)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~~ 95 (346)
-+-....-||++||||++|||.|+.++|+++++.+|+. .+.+|.|.+|..|++||++||.+|.+.|++.+.+|..
T Consensus 18 ~~~~~~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~ 92 (106)
T 4euw_A 18 NLYFQSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHL-HNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKK 92 (106)
T ss_dssp ----------CCCCCCCCHHHHHHHHHHHHHHHHCTTS-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 34455667899999999999999999999999999975 5679999999999999999999999999998887754
No 21
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=5.7e-12 Score=99.65 Aligned_cols=68 Identities=18% Similarity=0.262 Sum_probs=62.2
Q ss_pred CCCCCCCccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHh---ccCCCCCChhhhhhhhHHhhhccccccCC
Q 019122 26 SNDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEI---GSTYKNLPPEEKCRYKSEAKRVGKSKIGK 96 (346)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~---~~~~~sl~~~~k~~~~~~a~~~~~~~~~~ 96 (346)
+.++|+||||++|||.|+.|+|+++++. +..+.+|.|.+ |+.|++||++||.+|.+.|++.+..|.+.
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik~e---~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd 75 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELRRR---GLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKD 75 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHHHH---TCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcc
Confidence 5688999999999999999999999997 56678899998 99999999999999999999998888764
No 22
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.12 E-value=3.1e-11 Score=92.45 Aligned_cols=65 Identities=25% Similarity=0.345 Sum_probs=59.9
Q ss_pred CCCccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHhccCCCCCChhhhhhhhHHhhhccccccC
Q 019122 30 GRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKIG 95 (346)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~~ 95 (346)
|+||||++||+.|+.+.+.++++.+|+. .+.+|.|.+|..|++||++||.+|.+.|++...+|..
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~ 65 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKM-HNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMK 65 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999974 5789999999999999999999999999998877754
No 23
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.10 E-value=3.9e-11 Score=93.24 Aligned_cols=65 Identities=18% Similarity=0.327 Sum_probs=60.3
Q ss_pred CCCccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHhccCCCCCChhhhhhhhHHhhhccccccC
Q 019122 30 GRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKIG 95 (346)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~~ 95 (346)
|++|||+||||.|+.+++.++++.+|+. .+.++.+.+|..|++||++||.+|.+.|++...+|..
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~ 65 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLK-ESAAINQILGRRWHALSREEQAKYYELARKERQLHMQ 65 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCC-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999985 6889999999999999999999999999998877753
No 24
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.10 E-value=1.1e-11 Score=98.59 Aligned_cols=69 Identities=19% Similarity=0.203 Sum_probs=63.0
Q ss_pred CCCCCCCccCCcchhhhhHHHHHHHHhcCCCcc-hHHHHHHHhccCCCCCChhhhhhhhHHhhhcccccc
Q 019122 26 SNDGGRKRQCRNGFIRYFGEVVRQIKANDGMAC-ITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKI 94 (346)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~ 94 (346)
-.|||+||||++||+.|+.++|.++++.||+.. .+.++.|.+|..|++||++||.+|.+.|++...+|.
T Consensus 17 ~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~ 86 (97)
T 2lhj_A 17 KKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYE 86 (97)
T ss_dssp TSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999863 378999999999999999999999999999877764
No 25
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.09 E-value=7.4e-12 Score=98.90 Aligned_cols=68 Identities=19% Similarity=0.321 Sum_probs=63.2
Q ss_pred CCCCCCCccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHhccCCCCCChhhhhhhhHHhhhcccccc
Q 019122 26 SNDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKI 94 (346)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~ 94 (346)
-.|||.||||+|||+.|+.++|.++++.||+. .+.++.|.+|..|++||++||.+|.+.|++...+|.
T Consensus 15 ~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~ 82 (93)
T 1cg7_A 15 KKDPNAPKRALSAYMFFANENRDIVRSENPDI-TFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYE 82 (93)
T ss_dssp CCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTS-CHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999986 488999999999999999999999999999887774
No 26
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.08 E-value=3.8e-11 Score=90.41 Aligned_cols=64 Identities=17% Similarity=0.303 Sum_probs=59.4
Q ss_pred CCCCccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHhccCCCCCChhhhhhhhHHhhhccccccC
Q 019122 29 GGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKIG 95 (346)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~~ 95 (346)
||+||||+|||+.|+.+.|.++++.||+. .+.++.|.+|+.|++| +||.+|.+.|++.+.+|..
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~ 64 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGI-KVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHD 64 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTC-CHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHT
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999985 5789999999999999 8899999999998888754
No 27
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.07 E-value=4.9e-12 Score=99.32 Aligned_cols=64 Identities=11% Similarity=0.050 Sum_probs=57.3
Q ss_pred CCCCCccCCcchhhhhHHHHHHHHhcCCCcc-hHHHHHHHhccCCCCCChhhhhhhhHHhhhccccccC
Q 019122 28 DGGRKRQCRNGFIRYFGEVVRQIKANDGMAC-ITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKIG 95 (346)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~~ 95 (346)
|||.||||++|||.|+.++|.++++.||+.. .+.+|. +.|++||++||.+|.++|++.+..|.-
T Consensus 19 DpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~ 83 (90)
T 2yuk_A 19 EEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRI 83 (90)
T ss_dssp HHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999754 266666 889999999999999999998887753
No 28
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.06 E-value=4.2e-11 Score=90.18 Aligned_cols=63 Identities=11% Similarity=0.215 Sum_probs=57.9
Q ss_pred CCCCccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHhccCCCCCChhhhhhhhHHhhhcccccc
Q 019122 29 GGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKI 94 (346)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~ 94 (346)
.|+||||++|||.|+.+.|.++++.||+.. +.+|.|.+|+.|++||+ |.+|.++|++.+.+|.
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~ 63 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPGIK-VTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYD 63 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSSCC-HHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHH
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999864 79999999999999998 9999999999877764
No 29
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.06 E-value=5.3e-11 Score=90.78 Aligned_cols=65 Identities=23% Similarity=0.317 Sum_probs=59.9
Q ss_pred CCCccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHhccCCCCCChhhhhhhhHHhhhccccccC
Q 019122 30 GRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKIG 95 (346)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~~ 95 (346)
|.+|||+|||+.|+.+.|.++++.+|+. .+.++.|.+|..|++||++||.+|.+.|++.+.+|..
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~ 65 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDM-HNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMA 65 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999975 5779999999999999999999999999998877753
No 30
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.04 E-value=2e-10 Score=92.18 Aligned_cols=84 Identities=26% Similarity=0.349 Sum_probs=68.2
Q ss_pred CCCCCCCccCCcchhhhhHHHHHHHHhcCCCcc--hHHHHHHHhccCCCCCChhhhhhhhHHhhhccccccCCCCccccc
Q 019122 26 SNDGGRKRQCRNGFIRYFGEVVRQIKANDGMAC--ITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKIGKAKFPTRC 103 (346)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~~~~~~~tRc 103 (346)
+-.+++||||++|||.|+.+++. +|+.. .+.++.|.+|+.|++||++||.+|.+.|++.+.+|.
T Consensus 3 s~~~~~PKrP~say~lF~~e~~~-----~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~--------- 68 (101)
T 1v63_A 3 SGSSGPKKPPMNGYQKFSQELLS-----NGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYK--------- 68 (101)
T ss_dssp CCCCSSCCCCSSSHHHHHHHHHH-----HCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH---------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHh-----CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH---------
Confidence 44667899999999999999853 56543 468999999999999999999999999999888874
Q ss_pred CHHHHHHHHhhCCHHHHHHHHH
Q 019122 104 APDRLAAAVLQLTDEQRVVVRE 125 (346)
Q Consensus 104 S~~~~~~~i~~Ls~~qk~~I~~ 125 (346)
..+..-...++++++..+.+
T Consensus 69 --~e~~~Y~~~~~~~~~~~~~~ 88 (101)
T 1v63_A 69 --VHLDLWVKSLSPQDRAAYKE 88 (101)
T ss_dssp --HHHHHHHHHSCTTHHHHHHH
T ss_pred --HHHHHHHhhCCHHHHHHHHH
Confidence 44455556788888776544
No 31
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.04 E-value=1.1e-10 Score=94.68 Aligned_cols=81 Identities=21% Similarity=0.230 Sum_probs=70.2
Q ss_pred CCCCCC-ccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHhccCCCCCChhhhhhhhHHhhhccccccCCCCcccccCH
Q 019122 27 NDGGRK-RQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKIGKAKFPTRCAP 105 (346)
Q Consensus 27 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~~~~~~~tRcS~ 105 (346)
.|+|+| |||.+|||.|+.++|.+++ +..+.++.|.+|+.|++||++||.+|.+.|++.+.+|.
T Consensus 12 kd~~~P~KrP~say~lF~~e~r~~~k-----~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~----------- 75 (108)
T 1v64_A 12 KFDGRPTKPPPNSYSLYCAELMANMK-----DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYE----------- 75 (108)
T ss_dssp CTTTSCCCCCSSHHHHHHHHHHHHCT-----TSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH-----------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-----------
Confidence 589999 9999999999999999988 45789999999999999999999999999999888874
Q ss_pred HHHHHHHhhCCHHHHHHH
Q 019122 106 DRLAAAVLQLTDEQRVVV 123 (346)
Q Consensus 106 ~~~~~~i~~Ls~~qk~~I 123 (346)
..+..-...+++++++.+
T Consensus 76 ~e~~~Y~~~~~~~~r~~~ 93 (108)
T 1v64_A 76 VELLRFLESLPEEEQQRV 93 (108)
T ss_dssp HHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHhhCCHHHHHHH
Confidence 344455567888887765
No 32
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=98.99 E-value=1.4e-10 Score=100.15 Aligned_cols=68 Identities=16% Similarity=0.279 Sum_probs=63.1
Q ss_pred CCCCCCCccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHhccCCCCCChhhhhhhhHHhhhcccccc
Q 019122 26 SNDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKI 94 (346)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~ 94 (346)
..|||.||||++|||.|+.+.+.++++.||+ ..+.+|.|.+|..|++||+++|.+|.+.|++....|.
T Consensus 83 ~kdp~~pKrp~say~lf~~~~r~~~~~~~p~-~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~ 150 (159)
T 2gzk_A 83 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYE 150 (159)
T ss_dssp SCCTTCCCCCCCHHHHHHHHHHHHHHHHCSC-CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhhHhhHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999997 5688999999999999999999999999999877764
No 33
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=2.3e-10 Score=100.13 Aligned_cols=68 Identities=16% Similarity=0.166 Sum_probs=63.5
Q ss_pred CCCCCCccCCcchhhhhHHHHHHHHhcCCCc-chHHHHHHHhccCCCCCChhhhhhhhHHhhhcccccc
Q 019122 27 NDGGRKRQCRNGFIRYFGEVVRQIKANDGMA-CITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKI 94 (346)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~ 94 (346)
.||++||||.+||+.|+.+.|.++++.||+. ..+.++.|.+|+.|++||++||.+|.+.|++.+..|.
T Consensus 11 ~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~ 79 (173)
T 2yrq_A 11 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 79 (173)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999997 5789999999999999999999999999999777664
No 34
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=4.1e-10 Score=98.52 Aligned_cols=67 Identities=16% Similarity=0.297 Sum_probs=62.6
Q ss_pred CCCCCCccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHhccCCCCCChhhhhhhhHHhhhcccccc
Q 019122 27 NDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKI 94 (346)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~ 94 (346)
.|||.||||++||+.|+.+.+.++++.||+ ..+.++.|.+|..|++||+++|.+|.+.|.+...+|.
T Consensus 97 kdp~~pKrP~saf~lf~~~~r~~~~~~~p~-~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~ 163 (173)
T 2yrq_A 97 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYE 163 (173)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHHHHCSS-SCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHH
T ss_pred cCCccccCcccHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999998 5688999999999999999999999999999887764
No 35
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=98.88 E-value=7.6e-10 Score=100.28 Aligned_cols=85 Identities=20% Similarity=0.227 Sum_probs=72.6
Q ss_pred cCCCCCCCccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHhccCCCCCChhhhhhhhHHhhhccccccCCCCcccccC
Q 019122 25 ASNDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKIGKAKFPTRCA 104 (346)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~~~~~~~tRcS 104 (346)
.+.+|++||||.+||+.|+.+.|.++++.||+.. +.++.|.+|+.|++||++||.+|.+.|+..+..|.
T Consensus 3 s~~~p~~PKrP~say~lF~~~~r~~~k~~~P~~~-~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~---------- 71 (214)
T 3tq6_A 3 SSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAK-TTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYK---------- 71 (214)
T ss_dssp -CHHHHSCCCCCCHHHHHHHHHHHHHHHHCTTSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH----------
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHH----------
Confidence 3556899999999999999999999999999876 89999999999999999999999999999888774
Q ss_pred HHHHHHHHhhCCHHHHH
Q 019122 105 PDRLAAAVLQLTDEQRV 121 (346)
Q Consensus 105 ~~~~~~~i~~Ls~~qk~ 121 (346)
..+......++|.|..
T Consensus 72 -~e~~~y~~~~tp~q~~ 87 (214)
T 3tq6_A 72 -EEISRFKEQLTPSQIM 87 (214)
T ss_dssp -HHHHHHHHHCCHHHHH
T ss_pred -HHhhhhcccCCHHHHH
Confidence 3444555667777653
No 36
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=98.86 E-value=1e-09 Score=100.94 Aligned_cols=84 Identities=20% Similarity=0.224 Sum_probs=72.9
Q ss_pred cCCCCCCCccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHhccCCCCCChhhhhhhhHHhhhccccccCCCCcccccC
Q 019122 25 ASNDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKIGKAKFPTRCA 104 (346)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~~~~~~~tRcS 104 (346)
.+.||++||||.+||+.|+.+.|.++++.||+.. +.++.|.+|+.|++||++||.+|.+.|+..+..|.
T Consensus 35 s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~-~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~---------- 103 (238)
T 3tmm_A 35 SSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAK-TTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYK---------- 103 (238)
T ss_dssp CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH----------
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH----------
Confidence 3568899999999999999999999999999876 89999999999999999999999999999888774
Q ss_pred HHHHHHHHhhCCHHHH
Q 019122 105 PDRLAAAVLQLTDEQR 120 (346)
Q Consensus 105 ~~~~~~~i~~Ls~~qk 120 (346)
..+......++|.|.
T Consensus 104 -~e~~~y~~~~~p~~~ 118 (238)
T 3tmm_A 104 -EEISRFKEQLTPSQI 118 (238)
T ss_dssp -HHHHHHHHHCCHHHH
T ss_pred -HHHHHHHhcCCHHHH
Confidence 344455566777664
No 37
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=98.75 E-value=5.8e-10 Score=101.06 Aligned_cols=63 Identities=24% Similarity=0.269 Sum_probs=58.7
Q ss_pred CCCCCCccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHhccCCCCCChhhhhhhhHHhhhcccccc
Q 019122 27 NDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKI 94 (346)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~ 94 (346)
.|||.||||++|||.|+.+++.+++..+|. ++.|++|..|++||+++|.+|.++|.+.+..|.
T Consensus 110 kdp~~PKrP~say~lF~~e~r~~~k~~~p~-----ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~ 172 (214)
T 3tq6_A 110 TLLGKPKRPRSAYNVYVAERFQEAKGDSPQ-----EKLKTVKENWKNLSDSEKELYIQHAKEDETRYH 172 (214)
T ss_dssp HHTTCCCCCCCHHHHHHHHHTTTSSCSSHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcccccchhhhhHHHHHHhhccCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999988875 899999999999999999999999999888874
No 38
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=98.68 E-value=1.1e-09 Score=100.75 Aligned_cols=63 Identities=24% Similarity=0.269 Sum_probs=58.7
Q ss_pred CCCCCCccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHhccCCCCCChhhhhhhhHHhhhcccccc
Q 019122 27 NDGGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKI 94 (346)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~ 94 (346)
.|||.||||++|||.|+.|.+.+++..||. ++.|.+|+.|++||+++|.+|.++|++.+..|.
T Consensus 142 kdp~~PKrP~say~lF~~e~r~~~k~~~p~-----ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~ 204 (238)
T 3tmm_A 142 TLLGKPKRPRSAYNVYVAERFQEAKGDSPQ-----EKLKTVKENWKNLSDSEKELYIQHAKEDETRYH 204 (238)
T ss_dssp HHTTCCCCCCCHHHHHHHHHTTTSCCSSHH-----HHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCcHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999988875 799999999999999999999999999888875
No 39
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=98.58 E-value=1.7e-08 Score=86.89 Aligned_cols=65 Identities=23% Similarity=0.316 Sum_probs=60.3
Q ss_pred CCCCccCCcchhhhhHHHHHHHHhcCCCcchHHHHHHHhccCCCCCChhhhhhhhHHhhhcccccc
Q 019122 29 GGRKRQCRNGFIRYFGEVVRQIKANDGMACITKEIRKEIGSTYKNLPPEEKCRYKSEAKRVGKSKI 94 (346)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~sl~~~~k~~~~~~a~~~~~~~~ 94 (346)
|+++|||.++||.|..+.+.+++..||+ ..+.++.|.+|..|++||++||.+|.+.|+.....|.
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~ 66 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHR 66 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSS-CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHH
Confidence 6799999999999999999999999998 6788999999999999999999999999998776654
No 40
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=43.61 E-value=24 Score=29.12 Aligned_cols=81 Identities=12% Similarity=0.119 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCCCcch-HHHHHHHhccCCCCCChhhhh---hhhHHhhhccccccCCCCcccccCHHHHHHHHhhCCHHH
Q 019122 44 GEVVRQIKANDGMACI-TKEIRKEIGSTYKNLPPEEKC---RYKSEAKRVGKSKIGKAKFPTRCAPDRLAAAVLQLTDEQ 119 (346)
Q Consensus 44 ~~~~~~~~~~~~~~~~-~~~~~k~~~~~~~sl~~~~k~---~~~~~a~~~~~~~~~~~~~~tRcS~~~~~~~i~~Ls~~q 119 (346)
++|+...|+..|+.-. +..+.-.+-.+=.+|+|+.|. ...+..+..-.+...+.+. +.-..+.+....+.||++.
T Consensus 49 ~e~i~alK~KSp~L~~K~~~l~~~lk~Ki~~L~Peak~Fv~kli~~~r~l~~~~~~G~k~-~~~~lK~~~~~ykaLS~~a 127 (140)
T 2w9y_A 49 GEMIDEVSKKHPELGKRLATVLEGNKKRLDGLSPAAVEYAKKLIHMVTTTLCSLTVGKPI-DDADAKRLHQEFQSLSSED 127 (140)
T ss_dssp TTHHHHHHHHCHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHHHHTCCC-CTHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCHHH
Confidence 5678888888874322 225566666888999999888 3344455555555555544 4455677888889999999
Q ss_pred HHHHHH
Q 019122 120 RVVVRE 125 (346)
Q Consensus 120 k~~I~~ 125 (346)
++-++.
T Consensus 128 K~dL~k 133 (140)
T 2w9y_A 128 QAALRK 133 (140)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988865
No 41
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A {Saccharomyces cerevisiae} SCOP: e.15.1.1
Probab=25.20 E-value=31 Score=30.60 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHhcCC----------CcchHH---HHHHHhccCCCCCChhhhhhh
Q 019122 41 RYFGEVVRQIKANDG----------MACITK---EIRKEIGSTYKNLPPEEKCRY 82 (346)
Q Consensus 41 ~~~~~~~~~~~~~~~----------~~~~~~---~~~k~~~~~~~sl~~~~k~~~ 82 (346)
-||+||++.+....+ +.|--. +-=.+..++.++||.|||+.-
T Consensus 65 NFf~Df~~~l~~~~~~~~~~~I~~~~kcDFs~i~~~~~~~~e~kk~~skEEKk~~ 119 (223)
T 1ois_A 65 NFFNDFLQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQI 119 (223)
T ss_dssp HHHHHHHHHHHHTTCCTTCCCCCCGGGEECHHHHHHHHHHHHHHTTC---CHHHH
T ss_pred HHHHHHHHHhhhccccccCcccCchhhCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 388999999986541 111111 222334567789999988754
Done!