BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019123
(346 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AZW|A Chain A, Crystal Structure Of Monomeric Wbdd
Length = 471
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 162 LNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKL 221
LN++D+GC G S LA GAT+ GID ++NI + R A+ +P+ + E+ E++
Sbjct: 68 LNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAA-EFRVGRIEEV 126
Query: 222 VE--EQRKFDAVIASEVIEHVA 241
+ E+ +FD I V H+
Sbjct: 127 IAALEEGEFDLAIGLSVFHHIV 148
>pdb|4AX8|A Chain A, Medium Resolution Structure Of The Bifunctional Kinase-
Methyltransferase Wbdd
Length = 569
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 162 LNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKL 221
LN++D+GC G S LA GAT+ GID ++NI + R A+ +P+ + E+ E++
Sbjct: 68 LNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAA-EFRVGRIEEV 126
Query: 222 VE--EQRKFDAVIASEVIEHV 240
+ E+ +FD I V H+
Sbjct: 127 IAALEEGEFDLAIGLSVFHHI 147
>pdb|4AZS|A Chain A, High Resolution (2.2 A) Crystal Structure Of Wbdd.
pdb|4AZT|A Chain A, Co-Crystal Structure Of Wbdd And Kinase Inhibitor
Ly294002.
pdb|4AZV|A Chain A, Co-crystal Structure Of Wbdd And Kinase Inhibitor
Gw435821x
Length = 569
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 162 LNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKL 221
LN++D+GC G S LA GAT+ GID ++NI + R A+ +P+ + E+ E++
Sbjct: 68 LNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAA-EFRVGRIEEV 126
Query: 222 VE--EQRKFDAVIASEVIEHV 240
+ E+ +FD I V H+
Sbjct: 127 IAALEEGEFDLAIGLSVFHHI 147
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 58/146 (39%), Gaps = 22/146 (15%)
Query: 163 NIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV 222
++D+ CG G S L G V G+D E I+ AR +A S +E+ A KL
Sbjct: 41 KVLDLACGVGGFSFLLEDYGFEVVGVDISEDXIRKAREYA--KSRESNVEFIVGDARKLS 98
Query: 223 EEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHI 282
E + FD VI + I H +P E + V + R ++ I +
Sbjct: 99 FEDKTFDYVIFIDSIVHF-EPLELNQ------------VFKEVRRVLKPSGKFIXYFTDL 145
Query: 283 LHWLPK-------GTHQWSSFLTPEE 301
LP+ G W S + P++
Sbjct: 146 RELLPRLKESLVVGQKYWISKVIPDQ 171
>pdb|3CC8|A Chain A, Crystal Structure Of A Putative Methyltransferase
(Bce_1332) From Bacillus Cereus Atcc 10987 At 1.64 A
Resolution
Length = 230
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 22/132 (16%)
Query: 141 IRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARL 200
+ L +H +K E ++D+GC G L + G V+GI+A + + A+
Sbjct: 21 VNPNLLKHIKK--------EWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKE 72
Query: 201 HADL----DPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEHVADPAEFCKSLSALTVS 256
D D ET Y E+ +FD VI +V+EH+ DP + +
Sbjct: 73 KLDHVVLGDIETXDXPY----------EEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQ 122
Query: 257 EGATVISTINRS 268
G + S N S
Sbjct: 123 NGVILASIPNVS 134
>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
pdb|3BKW|B Chain B, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
Length = 243
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 161 GLNIVDVGCGGGILSEPLARMGAT-VTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAE 219
GL IVD+GCG G GA+ V G+D EK + AR P+T I Y +
Sbjct: 44 GLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKXLARARAAG---PDTG-ITYERADLD 99
Query: 220 KLVEEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVIST 264
KL Q FD +S + +V D A +++ G V ST
Sbjct: 100 KLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFST 144
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 164 IVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHA---DLDPET-STIEYCCTTAE 219
I+D+GCG G +S LA G +VTGID + I++A A L+ +T E+ A
Sbjct: 34 ILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENAS 93
Query: 220 KLVEEQRKFDAVIASEVIEHVADPAE 245
L FD + + V DP E
Sbjct: 94 SLSFHDSSFDFAVMQAFLTSVPDPKE 119
>pdb|2ZUL|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533) In Complex With
Cofactor S-Adenosyl-L-Methionine
pdb|2ZWV|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533)
Length = 375
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 26/84 (30%)
Query: 161 GLNIVDVGCGGGILSEPLARMGATVTGID-----------AVEKN-IKIARLHADLDPET 208
G ++D+G G G L+ PLARMGA V G++ +E N +K LH+D+D
Sbjct: 234 GRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVD--- 290
Query: 209 STIEYCCTTAEKLVEEQRKFDAVI 232
E L EE R FD ++
Sbjct: 291 ----------EALTEEAR-FDIIV 303
>pdb|3DMF|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet
pdb|3DMG|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adohcy
pdb|3DMH|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet And Guanosine
Length = 381
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 26/84 (30%)
Query: 161 GLNIVDVGCGGGILSEPLARMGATVTGID-----------AVEKN-IKIARLHADLDPET 208
G ++D+G G G L+ PLARMGA V G++ +E N +K LH+D+D
Sbjct: 234 GRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVD--- 290
Query: 209 STIEYCCTTAEKLVEEQRKFDAVI 232
E L EE R FD ++
Sbjct: 291 ----------EALTEEAR-FDIIV 303
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 22/170 (12%)
Query: 158 PFEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIAR-----LHADL-DPETSTI 211
P G I+D+GCG G L+E +A+ GA V G D I+ AR LH D+ D +
Sbjct: 55 PQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATXIEKARQNYPHLHFDVADARNFRV 114
Query: 212 EYCCTTAEKLVEEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTINRSMRA 271
+ + DAV ++ + V +P S+ S G V +
Sbjct: 115 D-------------KPLDAVFSNAXLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIK 161
Query: 272 YATAII--AAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMAGF 319
Y + A E + P+ + W F + E V IL++ DV A F
Sbjct: 162 YILEALYNALETLGIHNPQALNPW-YFPSIGEYVNILEKQGFDVTYAALF 210
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 9/125 (7%)
Query: 142 RSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLH 201
RST+ F + Y + E ++DVGCG G + L+R G G+D E I+ +
Sbjct: 40 RSTIIPFFEQ--YVKKEAE---VLDVGCGDGYGTYKLSRTGYKAVGVDISEVXIQKGKER 94
Query: 202 ADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATV 261
+ P+ S I+ ++ L E +F+A+ A +E +P + + S+G
Sbjct: 95 GE-GPDLSFIKGDLSS---LPFENEQFEAIXAINSLEWTEEPLRALNEIKRVLKSDGYAC 150
Query: 262 ISTIN 266
I+ +
Sbjct: 151 IAILG 155
>pdb|3E8S|A Chain A, Crystal Structure Of Putative Sam Dependent
Methyltransferase In Complex With Sah (Np_744700.1) From
Pseudomonas Putida Kt2440 At 2.10 A Resolution
Length = 227
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 163 NIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV 222
++D+GCG G L LA G G+D + AR A E Y AE V
Sbjct: 55 RVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAAR--AAGAGEVHLASY-AQLAEAKV 111
Query: 223 EEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTIN 266
+ +D + A+ + H D E + L V GA VI T++
Sbjct: 112 PVGKDYDLICANFALLH-QDIIELLSAXRTLLVPGGALVIQTLH 154
>pdb|3DTN|A Chain A, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei .
pdb|3DTN|B Chain B, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei
Length = 234
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 19/156 (12%)
Query: 163 NIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIA--RLHADLDPETSTIEYCCTTA 218
+I+D+G G G+LS L AT T +D EK ++IA R +L + +Y
Sbjct: 47 DILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDF 106
Query: 219 EKLVEEQRKFDAVIASEVIEHV--ADPAEFCKSLSALTVSEGATVISTINRSMRAYATAI 276
E+ K+D V+++ I H+ D E K ++ G IN + TA
Sbjct: 107 EE------KYDMVVSALSIHHLEDEDKKELYKRSYSILKESGI----FINADLVHGETAF 156
Query: 277 IAAEHILHWLPKGTHQWSSFLTPEELVLILQRASID 312
I + W + +S LT EE+ +R+ +D
Sbjct: 157 IENLNKTIWRQ---YVENSGLTEEEIAAGYERSKLD 189
>pdb|3DLI|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|C Chain C, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
Length = 240
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 13/103 (12%)
Query: 150 RKDPYSARPFEGLN-IVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPET 208
R PY F+G ++D+GCG G E G G+D E IK ++ ++
Sbjct: 34 RYIPY----FKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGKFNV-VKS 88
Query: 209 STIEYCCTTAEKLVEEQRKFDAVIASEVIEHVADPAEFCKSLS 251
IEY + +K + D V+ S +EH+ DP + LS
Sbjct: 89 DAIEYLKSLPDKYL------DGVMISHFVEHL-DPERLFELLS 124
>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|C Chain C, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
Length = 252
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 163 NIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHA 202
++D+ CG GI + LA G V G+D E+ +++AR A
Sbjct: 44 RVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKA 83
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 161 GLNIVDVGCGGGILSEPLARMG--ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTA 218
G +++ GCG G + LA+ A +T ID ++++ AR + + + +++
Sbjct: 38 GAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNG-IKNVKFLQANI 96
Query: 219 EKLVEEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATV 261
L E FD + V+EH+ P E KSL + + G T+
Sbjct: 97 FSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKV-LKPGGTI 138
>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|B Chain B, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|C Chain C, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|D Chain D, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
Length = 260
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 164 IVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE 223
++DV GGG ++ A V D E +K+AR + + +EY AE+
Sbjct: 41 VLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQXPF 99
Query: 224 EQRKFDAVIASEVIEHVADPAEFC 247
+F V H +PA F
Sbjct: 100 TDERFHIVTCRIAAHHFPNPASFV 123
>pdb|2P7H|A Chain A, Crystal Structure Of A Sam Dependent Methyl-Transferase
Type 12 Family Protein (Eca1738) From Pectobacterium
Atrosepticum Scri1043 At 1.85 A Resolution
pdb|2P7H|B Chain B, Crystal Structure Of A Sam Dependent Methyl-Transferase
Type 12 Family Protein (Eca1738) From Pectobacterium
Atrosepticum Scri1043 At 1.85 A Resolution
pdb|2P7H|C Chain C, Crystal Structure Of A Sam Dependent Methyl-Transferase
Type 12 Family Protein (Eca1738) From Pectobacterium
Atrosepticum Scri1043 At 1.85 A Resolution
pdb|2P7H|D Chain D, Crystal Structure Of A Sam Dependent Methyl-Transferase
Type 12 Family Protein (Eca1738) From Pectobacterium
Atrosepticum Scri1043 At 1.85 A Resolution
pdb|2P7I|A Chain A, Crystal Structure Of A Sam Dependent Methyl-Transferase
Type 12 Family Protein (Eca1738) From Pectobacterium
Atrosepticum Scri1043 At 1.74 A Resolution
pdb|2P7I|B Chain B, Crystal Structure Of A Sam Dependent Methyl-Transferase
Type 12 Family Protein (Eca1738) From Pectobacterium
Atrosepticum Scri1043 At 1.74 A Resolution
Length = 250
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 10/114 (8%)
Query: 153 PYSARPFEGL----NIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPET 208
P+ R F N++++G G + L +T ++A E+ I A+
Sbjct: 31 PFXVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRL-----K 85
Query: 209 STIEYCCTTAEKLVEEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVI 262
I Y + E + R++D ++ + V+EH+ DP K ++ ++EG +
Sbjct: 86 DGITYIHSRFED-AQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLF 138
>pdb|4FR0|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With Sam
pdb|4FS8|A Chain A, The Structure Of An As(Iii) S-Adenosylmethionine
Methyltransferase: Insights Into The Mechanism Of
Arsenic Biotransformation
pdb|4FSD|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With As(Iii)
Length = 383
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 159 FEGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPE 207
EG ++D+GCG G L+ L V G+D ++ +++AR + + E
Sbjct: 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAE 133
>pdb|1R74|A Chain A, Crystal Structure Of Human Glycine N-Methyltransferase
pdb|1R74|B Chain B, Crystal Structure Of Human Glycine N-Methyltransferase
Length = 294
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 164 IVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIA 198
++DV CG G+ S L G +VT +DA +K +K A
Sbjct: 60 VLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYA 94
>pdb|2AZT|A Chain A, Crystal Structure Of H176n Mutant Of Human Glycine
N-Methyltransferase
pdb|2AZT|B Chain B, Crystal Structure Of H176n Mutant Of Human Glycine
N-Methyltransferase
Length = 295
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 164 IVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIA 198
++DV CG G+ S L G +VT +DA +K +K A
Sbjct: 61 VLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYA 95
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 159 FEGLNIVDVGCGGGILSEPLARMGA-TVTGIDAVE---KNIKIARLH 201
F+ ++DVGCG GILS A+ GA V G+D E + + I RL+
Sbjct: 63 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLN 109
>pdb|1XVA|A Chain A, Methyltransferase
pdb|1XVA|B Chain B, Methyltransferase
pdb|1BHJ|A Chain A, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1BHJ|B Chain B, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1D2C|A Chain A, Methyltransferase
pdb|1D2C|B Chain B, Methyltransferase
pdb|1NBH|A Chain A, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|B Chain B, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|C Chain C, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|D Chain D, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1KIA|A Chain A, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|B Chain B, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|C Chain C, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|D Chain D, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|2IDJ|A Chain A, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|B Chain B, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|C Chain C, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|D Chain D, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDK|A Chain A, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|B Chain B, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|C Chain C, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|D Chain D, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
Length = 292
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 164 IVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIA 198
++DV CG G+ S L G +VT +DA +K +K A
Sbjct: 60 VLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYA 94
>pdb|3THR|A Chain A, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|B Chain B, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|C Chain C, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|D Chain D, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THS|A Chain A, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|B Chain B, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|C Chain C, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|D Chain D, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
Length = 293
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 164 IVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIA 198
++DV CG G+ S L G +VT +DA +K +K A
Sbjct: 61 VLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYA 95
>pdb|1D2G|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2G|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2H|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|C Chain C, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|D Chain D, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1NBI|A Chain A, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|B Chain B, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|C Chain C, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|D Chain D, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam
Length = 292
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 164 IVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIA 198
++DV CG G+ S L G +VT +DA +K +K A
Sbjct: 60 VLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYA 94
>pdb|1JSX|A Chain A, Crystal Structure Of The Escherichia Coli
Glucose-Inhibited Division Protein B (Gidb)
Length = 207
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 5/123 (4%)
Query: 132 ALNPTRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLA--RMGATVTGID 189
A N T + L RH A +G +DVG G G+ PL+ R A T +D
Sbjct: 37 AYNLTSVRDPNEMLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLD 96
Query: 190 AVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEHVADPAEFCKS 249
++ K ++ R + + IE + E+ E FD VI S + D +C
Sbjct: 97 SLGKRVRFLR-QVQHELKLENIEPVQSRVEEFPSEP-PFDGVI-SRAFASLNDMVSWCHH 153
Query: 250 LSA 252
L
Sbjct: 154 LPG 156
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 67/181 (37%), Gaps = 45/181 (24%)
Query: 160 EGLNIVDVGCGGGILSEPLARM-GAT--VTGIDAVEKNIK--IARLHADLDP---ETSTI 211
EG +DVG G GIL+ ARM G T V GID +++ + + + D DP + +
Sbjct: 77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKD-DPTLLSSGRV 135
Query: 212 EYCCTTAEKLVEEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTINRSMRA 271
+ E+ +DA+ HV A + G +I
Sbjct: 136 QLVVGDGRMGYAEEAPYDAI-------HVGAAAPVVPQALIDQLKPGGRLI--------- 179
Query: 272 YATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMAGFVYNPLTGR---W 328
LP G + L E LQ SI +K + G +Y PLT + W
Sbjct: 180 --------------LPVGPAGGNQML---EQYDKLQDGSIKMKPLMGVIYVPLTDKEKQW 222
Query: 329 S 329
S
Sbjct: 223 S 223
>pdb|1UWV|A Chain A, Crystal Structure Of Ruma, The Iron-Sulfur Cluster
Containing E. Coli 23s Ribosomal Rna 5-Methyluridine
Methyltransferase
Length = 433
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 164 IVDVGCGGGILSEPLARMGATVTGIDA----VEKNIKIARLHA 202
++D+ CG G + PLA A+V G++ VEK + ARL+
Sbjct: 290 VLDLFCGXGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNG 332
>pdb|3BKX|A Chain A, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
pdb|3BKX|B Chain B, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
Length = 275
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 130 LHALNPT---RLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLA-RMGAT- 184
L AL PT R R T R + + +P E I+++GCG G LS LA ++G++
Sbjct: 12 LXALGPTANARTIQRRQTAHRLAIAEAWQVKPGE--KILEIGCGQGDLSAVLADQVGSSG 69
Query: 185 -VTGID 189
VTGID
Sbjct: 70 HVTGID 75
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 164 IVDVGCGGGILSEPLARMGAT-VTGID 189
++DVGCG GILS A+ GA V G+D
Sbjct: 42 VLDVGCGTGILSMFAAKHGAKHVIGVD 68
>pdb|2BH2|A Chain A, Crystal Structure Of E. Coli 5-Methyluridine
Methyltransferase Ruma In Complex With Ribosomal Rna
Substrate And S-Adenosylhomocysteine.
pdb|2BH2|B Chain B, Crystal Structure Of E. Coli 5-Methyluridine
Methyltransferase Ruma In Complex With Ribosomal Rna
Substrate And S-Adenosylhomocysteine
Length = 433
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 164 IVDVGCGGGILSEPLARMGATVTGIDA----VEKNIKIARLHA 202
++D+ CG G + PLA A+V G++ VEK + ARL+
Sbjct: 290 VLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNG 332
>pdb|3VNK|A Chain A, Crystal Structures Of D-Psicose 3-Epimerase With
D-Fructose From Clostridium Cellulolyticum H10
pdb|3VNK|B Chain B, Crystal Structures Of D-Psicose 3-Epimerase With
D-Fructose From Clostridium Cellulolyticum H10
pdb|3VNK|C Chain C, Crystal Structures Of D-Psicose 3-Epimerase With
D-Fructose From Clostridium Cellulolyticum H10
pdb|3VNK|D Chain D, Crystal Structures Of D-Psicose 3-Epimerase With
D-Fructose From Clostridium Cellulolyticum H10
pdb|3VNM|A Chain A, Crystal Structures Of D-Psicose 3-Epimerase With D-Sorbose
From Clostridium Cellulolyticum H10
pdb|3VNM|B Chain B, Crystal Structures Of D-Psicose 3-Epimerase With D-Sorbose
From Clostridium Cellulolyticum H10
pdb|3VNM|C Chain C, Crystal Structures Of D-Psicose 3-Epimerase With D-Sorbose
From Clostridium Cellulolyticum H10
pdb|3VNM|D Chain D, Crystal Structures Of D-Psicose 3-Epimerase With D-Sorbose
From Clostridium Cellulolyticum H10
Length = 293
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 161 GLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIAR 199
G + D+G G ++ EP RMG TV NIK+ R
Sbjct: 229 GEALADIGYNGSVVMEPFVRMGGTVG------SNIKVWR 261
>pdb|3VNI|A Chain A, Crystal Structures Of D-Psicose 3-Epimerase From
Clostridium Cellulolyticum H10 And Its Complex With
Ketohexose Sugars
pdb|3VNI|B Chain B, Crystal Structures Of D-Psicose 3-Epimerase From
Clostridium Cellulolyticum H10 And Its Complex With
Ketohexose Sugars
pdb|3VNI|C Chain C, Crystal Structures Of D-Psicose 3-Epimerase From
Clostridium Cellulolyticum H10 And Its Complex With
Ketohexose Sugars
pdb|3VNI|D Chain D, Crystal Structures Of D-Psicose 3-Epimerase From
Clostridium Cellulolyticum H10 And Its Complex With
Ketohexose Sugars
pdb|3VNJ|A Chain A, Crystal Structures Of D-Psicose 3-Epimerase With D-Psicose
From Clostridium Cellulolyticum H10
pdb|3VNJ|B Chain B, Crystal Structures Of D-Psicose 3-Epimerase With D-Psicose
From Clostridium Cellulolyticum H10
pdb|3VNJ|C Chain C, Crystal Structures Of D-Psicose 3-Epimerase With D-Psicose
From Clostridium Cellulolyticum H10
pdb|3VNJ|D Chain D, Crystal Structures Of D-Psicose 3-Epimerase With D-Psicose
From Clostridium Cellulolyticum H10
pdb|3VNL|A Chain A, Crystal Structures Of D-Psicose 3-Epimerase With
D-Tagatose From Clostridium Cellulolyticum H10
pdb|3VNL|B Chain B, Crystal Structures Of D-Psicose 3-Epimerase With
D-Tagatose From Clostridium Cellulolyticum H10
pdb|3VNL|C Chain C, Crystal Structures Of D-Psicose 3-Epimerase With
D-Tagatose From Clostridium Cellulolyticum H10
pdb|3VNL|D Chain D, Crystal Structures Of D-Psicose 3-Epimerase With
D-Tagatose From Clostridium Cellulolyticum H10
Length = 294
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 161 GLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIAR 199
G + D+G G ++ EP RMG TV NIK+ R
Sbjct: 230 GEALADIGYNGSVVMEPFVRMGGTVG------SNIKVWR 262
>pdb|3D2L|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|C Chain C, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|D Chain D, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
Length = 243
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 161 GLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHA 202
G I D+GCG G + LA VTG+D E+ ++IA+ A
Sbjct: 34 GKRIADIGCGTGTATLLLADH-YEVTGVDLSEEXLEIAQEKA 74
>pdb|3HTX|A Chain A, Crystal Structure Of Small Rna Methyltransferase Hen1
pdb|3HTX|D Chain D, Crystal Structure Of Small Rna Methyltransferase Hen1
Length = 950
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 164 IVDVGCGGGILSEPLARMGA---TVTGIDAVEKNIKIA--RLHADLDPETSTIEYCCTTA 218
+VD GCG G L + L T+ G+D K + A LH L+ E ++
Sbjct: 725 LVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYD 784
Query: 219 EKLVE-EQRKFDAVIAS--EVIEHVAD 242
++E + R D I + EVIEH+ +
Sbjct: 785 GSILEFDSRLHDVDIGTCLEVIEHMEE 811
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 159 FEGLNIVDVGCGGGILSEPLARMGA-TVTGIDAVE---KNIKIARLH 201
F+ ++DVGCG GILS A+ GA V +D E + + I RL+
Sbjct: 44 FKDKVVLDVGCGTGILSMFAAKAGAKKVIAVDQSEILYQAMDIIRLN 90
>pdb|2VS1|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
(Uracil-54, C5)-Methyltransferase In Complex With
S-Adenosyl-L- Homocysteine
Length = 425
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 160 EGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLD 205
EG I+D+ G G LA+ G V G D+ E I++AR + +++
Sbjct: 290 EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEIN 335
>pdb|2JJQ|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
(Uracil-54, C5)-Methyltransferase In Complex With
S-Adenosyl-L- Homocysteine
Length = 425
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 160 EGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLD 205
EG I+D+ G G LA+ G V G D+ E I++AR + +++
Sbjct: 290 EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEIN 335
>pdb|1R8X|A Chain A, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Tetragonal Form)
pdb|1R8X|B Chain B, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Tetragonal Form)
pdb|1R8Y|A Chain A, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|B Chain B, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|C Chain C, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|D Chain D, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|E Chain E, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|F Chain F, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|G Chain G, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|H Chain H, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
Length = 292
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 164 IVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIA 198
++DV CG G+ S L G +V +DA +K +K A
Sbjct: 60 VLDVACGTGVDSIMLVEEGFSVMSVDASDKMLKYA 94
>pdb|3HNR|A Chain A, Crystal Structure Of A Probable Methyltransferase
Bt9727_4108 From Bacillus Thuringiensis Subsp. Northeast
Structural Genomics Consortium Target Id Bur219
Length = 220
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 17/142 (11%)
Query: 163 NIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKL- 221
N+++ G G G L+ L G TV GI+ + IA+ E E+ T + L
Sbjct: 48 NVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAK-------EKLPKEFSITEGDFLS 100
Query: 222 VEEQRKFDAVIASEVIEHVADPAEFC--KSLSALTVSEGATVIS-TINRSMRAYATAIIA 278
E D ++++ H+ D + S L G V + TI AY + A
Sbjct: 101 FEVPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEA 160
Query: 279 AEHILHWLPKGTHQWSSFLTPE 300
A+ +G HQ ++ L E
Sbjct: 161 AKQ------RGFHQLANDLQTE 176
>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836
pdb|2NXE|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXE|B Chain B, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXJ|A Chain A, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXJ|B Chain B, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXN|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With Ribosomal Protein L11
pdb|2NXC|A Chain A, Apo-Form Of T. Thermophilus Ribosomal Protein L11
Methyltransferase (Prma)
pdb|3CJQ|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|D Chain D, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|G Chain G, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJR|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Ribosomal Protein L11 (k39a) And Inhibitor
Sinefungin.
pdb|3EGV|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Trimethylated Ribosomal Protein L11
pdb|2ZBP|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Methionine
pdb|2ZBQ|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Homocysteine
pdb|2ZBR|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-adenosyl-ornithine
Length = 254
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 11/54 (20%)
Query: 136 TRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARMGATVTGID 189
TRLA L RH R G ++D+G G G+L+ ++G G+D
Sbjct: 107 TRLAL--KALARHLRP---------GDKVLDLGTGSGVLAIAAEKLGGKALGVD 149
>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|C Chain C, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|E Chain E, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|G Chain G, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|I Chain I, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|K Chain K, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|M Chain M, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|O Chain O, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
Length = 254
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 11/54 (20%)
Query: 136 TRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARMGATVTGID 189
TRLA L RH R G ++D+G G G+L+ ++G G+D
Sbjct: 107 TRLAL--KALARHLRP---------GDKVLDLGTGSGVLAIAAEKLGGKALGVD 149
>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
Length = 348
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 159 FEGLNIVDVGCGGGILSEPLARMGA 183
F+ ++DVGCG GILS A+ GA
Sbjct: 49 FKDKIVLDVGCGSGILSFFAAQAGA 73
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 142 RSTLCRHFRKDPY------SARPFEGLNIVDVGCGGGILSEPLARMGA 183
+ L R D Y + FEG ++DVG G GIL+ A+ GA
Sbjct: 39 KDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGA 86
>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|B Chain B, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|C Chain C, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|D Chain D, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
Length = 341
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 159 FEGLNIVDVGCGGGILSEPLARMGA 183
F+ ++DVGCG GILS A+ GA
Sbjct: 44 FKDKIVLDVGCGSGILSFFAAQAGA 68
>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|B Chain B, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|C Chain C, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|D Chain D, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3G|A Chain A, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480).
pdb|3B3G|B Chain B, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480)
Length = 341
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 159 FEGLNIVDVGCGGGILSEPLARMGA 183
F+ ++DVGCG GILS A+ GA
Sbjct: 45 FKDKIVLDVGCGSGILSFFAAQAGA 69
>pdb|3GRZ|A Chain A, Crystal Structure Of Ribosomal Protein L11 Methylase From
Lactobacillus Delbrueckii Subsp. Bulgaricus
pdb|3GRZ|B Chain B, Crystal Structure Of Ribosomal Protein L11 Methylase From
Lactobacillus Delbrueckii Subsp. Bulgaricus
Length = 205
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 162 LNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEK 220
L + DVG G GIL+ ++GA +V D ++++ A +A L+ +
Sbjct: 62 LTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALN---GIYDIALQKTSL 118
Query: 221 LVEEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTIN 266
L + KFD ++A+ + E + D L + +G + S I+
Sbjct: 119 LADVDGKFDLIVANILAEILLD---LIPQLDSHLNEDGQVIFSGID 161
>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|D Chain D, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|F Chain F, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|H Chain H, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V7E|A Chain A, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
pdb|2V7E|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
Length = 346
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 159 FEGLNIVDVGCGGGILSEPLARMGA 183
F+ ++DVGCG GILS A+ GA
Sbjct: 40 FKDKIVLDVGCGSGILSFFAAQAGA 64
>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain
Of Coactivator-Associated Arginine Methyl Transferase
I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered)
Length = 480
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 159 FEGLNIVDVGCGGGILSEPLARMGA 183
F+ ++DVGCG GILS A+ GA
Sbjct: 157 FKDKIVLDVGCGSGILSFFAAQAGA 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.129 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,110,359
Number of Sequences: 62578
Number of extensions: 337665
Number of successful extensions: 1046
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1004
Number of HSP's gapped (non-prelim): 67
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)