Query 019123
Match_columns 346
No_of_seqs 326 out of 3235
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 06:52:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019123.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019123hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02396 hexaprenyldihydroxybe 100.0 4.6E-38 9.9E-43 289.3 26.7 248 98-345 69-316 (322)
2 COG2227 UbiG 2-polyprenyl-3-me 100.0 3.8E-38 8.1E-43 270.3 20.2 235 102-346 9-243 (243)
3 KOG1540 Ubiquinone biosynthesi 100.0 2.2E-36 4.7E-41 258.9 19.7 222 95-330 43-294 (296)
4 KOG1270 Methyltransferases [Co 100.0 5E-35 1.1E-39 252.3 12.7 238 103-343 32-274 (282)
5 COG2226 UbiE Methylase involve 100.0 8.2E-33 1.8E-37 241.8 17.9 207 108-329 11-235 (238)
6 PF01209 Ubie_methyltran: ubiE 100.0 3.7E-31 8E-36 233.8 10.2 207 108-329 7-231 (233)
7 PRK05134 bifunctional 3-demeth 100.0 1E-26 2.2E-31 207.0 22.6 230 103-345 2-232 (233)
8 PLN02233 ubiquinone biosynthes 99.9 1E-25 2.2E-30 203.3 17.9 208 106-326 32-256 (261)
9 TIGR01983 UbiG ubiquinone bios 99.9 4.4E-25 9.5E-30 195.2 19.8 221 111-339 3-224 (224)
10 PRK11036 putative S-adenosyl-L 99.9 5E-22 1.1E-26 179.1 20.1 199 112-319 5-208 (255)
11 TIGR02752 MenG_heptapren 2-hep 99.9 1.1E-21 2.4E-26 174.4 19.3 168 157-325 42-225 (231)
12 PLN02244 tocopherol O-methyltr 99.9 1E-21 2.3E-26 183.8 19.5 160 159-320 117-280 (340)
13 PRK05785 hypothetical protein; 99.9 2.9E-22 6.4E-27 176.9 13.2 156 160-328 51-221 (226)
14 PRK10258 biotin biosynthesis p 99.9 6.6E-20 1.4E-24 165.0 20.5 142 159-313 41-182 (251)
15 PRK14103 trans-aconitate 2-met 99.9 4.5E-20 9.8E-25 166.4 18.8 151 157-317 26-183 (255)
16 PF13489 Methyltransf_23: Meth 99.9 1.4E-20 3.1E-25 157.3 14.1 140 158-315 20-160 (161)
17 PRK15068 tRNA mo(5)U34 methylt 99.8 5.1E-20 1.1E-24 170.7 18.9 205 102-320 68-276 (322)
18 TIGR00452 methyltransferase, p 99.8 1.5E-19 3.3E-24 165.9 21.7 208 98-319 63-274 (314)
19 PTZ00098 phosphoethanolamine N 99.8 5.3E-20 1.1E-24 166.3 17.2 151 157-319 49-203 (263)
20 PF02353 CMAS: Mycolic acid cy 99.8 4E-20 8.6E-25 167.1 15.5 158 156-320 58-219 (273)
21 COG2230 Cfa Cyclopropane fatty 99.8 2.3E-19 4.9E-24 160.0 16.1 155 156-320 68-225 (283)
22 PF08241 Methyltransf_11: Meth 99.8 1.4E-19 3E-24 137.4 10.5 94 165-262 1-95 (95)
23 PRK00216 ubiE ubiquinone/menaq 99.8 1.2E-18 2.6E-23 155.2 18.3 163 159-321 50-228 (239)
24 PLN02336 phosphoethanolamine N 99.8 7.3E-19 1.6E-23 172.4 17.2 151 158-319 264-415 (475)
25 PLN02490 MPBQ/MSBQ methyltrans 99.8 2.4E-18 5.3E-23 159.2 18.9 143 160-319 113-257 (340)
26 PF13847 Methyltransf_31: Meth 99.8 6.8E-19 1.5E-23 146.2 13.7 105 160-266 3-112 (152)
27 TIGR00740 methyltransferase, p 99.8 1.1E-18 2.4E-23 155.8 15.7 154 160-315 53-224 (239)
28 PRK15451 tRNA cmo(5)U34 methyl 99.8 9.7E-19 2.1E-23 156.9 15.1 154 160-315 56-227 (247)
29 PF08003 Methyltransf_9: Prote 99.8 2.8E-18 6.1E-23 153.0 17.1 201 101-320 60-269 (315)
30 PRK11207 tellurite resistance 99.8 1.2E-18 2.6E-23 150.9 13.7 139 159-318 29-170 (197)
31 PRK11873 arsM arsenite S-adeno 99.8 4.5E-18 9.7E-23 154.9 18.1 154 157-318 74-230 (272)
32 smart00828 PKS_MT Methyltransf 99.8 2E-18 4.2E-23 152.7 15.2 146 162-322 1-148 (224)
33 TIGR01934 MenG_MenH_UbiE ubiqu 99.8 8.2E-18 1.8E-22 148.3 18.4 161 159-322 38-214 (223)
34 PRK01683 trans-aconitate 2-met 99.8 6.9E-18 1.5E-22 152.5 17.8 150 157-314 28-183 (258)
35 PRK06202 hypothetical protein; 99.8 7.7E-18 1.7E-22 149.8 15.1 155 159-320 59-224 (232)
36 TIGR02072 BioC biotin biosynth 99.8 1.6E-17 3.5E-22 147.9 17.0 139 160-316 34-174 (240)
37 PF12847 Methyltransf_18: Meth 99.8 5.3E-18 1.1E-22 133.2 12.2 104 160-264 1-111 (112)
38 TIGR00477 tehB tellurite resis 99.8 8.2E-18 1.8E-22 145.4 13.3 139 160-319 30-170 (195)
39 PLN02232 ubiquinone biosynthes 99.8 1E-17 2.3E-22 140.1 12.4 143 186-329 1-158 (160)
40 TIGR02021 BchM-ChlM magnesium 99.7 4.4E-17 9.5E-22 143.6 16.0 152 159-320 54-208 (219)
41 PRK00107 gidB 16S rRNA methylt 99.7 5.8E-17 1.3E-21 138.5 16.1 130 160-325 45-176 (187)
42 PRK08317 hypothetical protein; 99.7 3.2E-17 7E-22 145.9 15.2 156 157-319 16-177 (241)
43 PRK12335 tellurite resistance 99.7 5.3E-17 1.2E-21 148.8 15.5 138 160-318 120-259 (287)
44 KOG4300 Predicted methyltransf 99.7 5.4E-17 1.2E-21 135.6 12.1 152 160-318 76-232 (252)
45 PLN02585 magnesium protoporphy 99.7 7.6E-16 1.7E-20 141.7 19.9 148 160-317 144-298 (315)
46 TIGR02716 C20_methyl_CrtF C-20 99.7 4E-16 8.7E-21 144.4 16.9 153 157-316 146-304 (306)
47 PRK07580 Mg-protoporphyrin IX 99.7 5E-16 1.1E-20 137.8 16.4 152 159-320 62-216 (230)
48 KOG2361 Predicted methyltransf 99.7 6.5E-17 1.4E-21 138.5 9.6 206 102-316 20-235 (264)
49 COG4106 Tam Trans-aconitate me 99.7 5.8E-16 1.3E-20 130.5 14.1 165 156-327 26-195 (257)
50 TIGR00138 gidB 16S rRNA methyl 99.7 4.2E-16 9.1E-21 132.9 13.4 99 160-264 42-142 (181)
51 PRK11705 cyclopropane fatty ac 99.7 5.7E-16 1.2E-20 146.9 14.7 148 157-320 164-314 (383)
52 PF13649 Methyltransf_25: Meth 99.7 1.3E-16 2.7E-21 123.1 8.5 93 164-258 1-101 (101)
53 PRK08287 cobalt-precorrin-6Y C 99.7 2.6E-15 5.6E-20 129.1 16.7 153 158-345 29-185 (187)
54 PF07021 MetW: Methionine bios 99.7 1.6E-15 3.4E-20 127.3 14.1 150 159-323 12-172 (193)
55 PF08242 Methyltransf_12: Meth 99.7 2.7E-17 5.8E-22 126.4 2.8 95 165-260 1-99 (99)
56 PF03848 TehB: Tellurite resis 99.7 2E-15 4.3E-20 128.3 13.6 139 159-318 29-169 (192)
57 TIGR02081 metW methionine bios 99.7 4.5E-15 9.8E-20 128.3 15.9 145 160-319 13-168 (194)
58 TIGR03840 TMPT_Se_Te thiopurin 99.7 5.9E-15 1.3E-19 128.9 16.4 162 160-340 34-212 (213)
59 TIGR00537 hemK_rel_arch HemK-r 99.6 9.5E-15 2.1E-19 124.7 15.5 126 160-318 19-165 (179)
60 PRK00121 trmB tRNA (guanine-N( 99.6 3.5E-15 7.7E-20 129.7 12.4 107 160-267 40-159 (202)
61 PRK13255 thiopurine S-methyltr 99.6 3.6E-14 7.9E-19 124.4 18.5 164 160-342 37-217 (218)
62 PLN02336 phosphoethanolamine N 99.6 5E-15 1.1E-19 145.3 14.2 140 159-315 36-179 (475)
63 TIGR03587 Pse_Me-ase pseudamin 99.6 2.7E-14 5.9E-19 124.1 16.5 98 160-266 43-144 (204)
64 PRK00377 cbiT cobalt-precorrin 99.6 3.9E-14 8.5E-19 122.8 17.4 155 157-344 37-197 (198)
65 PRK04266 fibrillarin; Provisio 99.6 5.8E-14 1.3E-18 123.6 17.6 134 157-319 69-211 (226)
66 smart00138 MeTrc Methyltransfe 99.6 9.7E-15 2.1E-19 132.0 11.1 107 159-265 98-243 (264)
67 PRK14968 putative methyltransf 99.6 4.9E-14 1.1E-18 120.9 14.6 129 159-317 22-172 (188)
68 PRK06922 hypothetical protein; 99.6 1.4E-14 3E-19 142.2 11.8 105 159-265 417-538 (677)
69 PRK11088 rrmA 23S rRNA methylt 99.6 2.2E-14 4.7E-19 130.6 11.7 97 160-269 85-186 (272)
70 PRK13944 protein-L-isoaspartat 99.6 6.9E-14 1.5E-18 121.9 14.2 102 157-264 69-173 (205)
71 TIGR02469 CbiT precorrin-6Y C5 99.6 8.2E-14 1.8E-18 111.0 13.3 104 158-265 17-123 (124)
72 TIGR00091 tRNA (guanine-N(7)-) 99.6 8.6E-14 1.9E-18 120.2 14.1 108 160-268 16-136 (194)
73 KOG1271 Methyltransferases [Ge 99.5 9.5E-14 2.1E-18 114.0 12.8 127 162-318 69-205 (227)
74 TIGR03438 probable methyltrans 99.5 1.7E-13 3.7E-18 126.4 16.3 106 160-265 63-178 (301)
75 PF05401 NodS: Nodulation prot 99.5 3.6E-14 7.8E-19 119.4 10.4 130 160-313 43-175 (201)
76 PRK00517 prmA ribosomal protei 99.5 1.4E-13 3E-18 123.7 13.6 119 159-317 118-237 (250)
77 PF13659 Methyltransf_26: Meth 99.5 5.4E-14 1.2E-18 111.2 9.4 105 161-265 1-116 (117)
78 TIGR01177 conserved hypothetic 99.5 3.4E-13 7.3E-18 126.0 15.0 109 157-266 179-296 (329)
79 PLN03075 nicotianamine synthas 99.5 1.5E-13 3.3E-18 124.2 12.1 104 160-264 123-233 (296)
80 TIGR00406 prmA ribosomal prote 99.5 3.3E-13 7.1E-18 123.7 14.3 103 159-266 158-261 (288)
81 PRK07402 precorrin-6B methylas 99.5 7.6E-13 1.7E-17 114.6 15.9 156 157-344 37-195 (196)
82 PTZ00146 fibrillarin; Provisio 99.5 7.5E-13 1.6E-17 119.2 16.1 155 131-319 108-272 (293)
83 PRK14967 putative methyltransf 99.5 1.1E-12 2.3E-17 116.0 16.8 106 158-266 34-161 (223)
84 TIGR03534 RF_mod_PrmC protein- 99.5 4.9E-13 1.1E-17 120.1 14.3 126 160-317 87-240 (251)
85 PF05891 Methyltransf_PK: AdoM 99.5 1.8E-13 3.8E-18 117.2 10.6 189 112-317 4-200 (218)
86 COG2242 CobL Precorrin-6B meth 99.5 2.6E-12 5.5E-17 107.4 16.9 154 156-344 30-186 (187)
87 PRK13942 protein-L-isoaspartat 99.5 2.7E-13 5.9E-18 118.7 11.7 101 157-264 73-176 (212)
88 PF05175 MTS: Methyltransferas 99.5 3.2E-13 7E-18 114.2 11.6 105 160-266 31-142 (170)
89 COG4976 Predicted methyltransf 99.5 9.8E-14 2.1E-18 118.0 8.1 145 157-321 122-268 (287)
90 TIGR00080 pimt protein-L-isoas 99.5 2.8E-13 6.1E-18 119.0 11.2 101 157-264 74-177 (215)
91 PRK14121 tRNA (guanine-N(7)-)- 99.5 1.6E-12 3.4E-17 121.9 15.4 153 160-316 122-284 (390)
92 KOG3010 Methyltransferase [Gen 99.5 1.5E-13 3.3E-18 118.0 7.6 104 162-266 35-139 (261)
93 PF05148 Methyltransf_8: Hypot 99.5 1.3E-12 2.8E-17 110.7 12.9 112 160-316 72-183 (219)
94 TIGR03533 L3_gln_methyl protei 99.4 2.4E-12 5.1E-17 117.7 15.4 124 160-315 121-271 (284)
95 COG2264 PrmA Ribosomal protein 99.4 1.1E-12 2.4E-17 118.2 12.9 125 159-317 161-287 (300)
96 PRK15001 SAM-dependent 23S rib 99.4 8.9E-13 1.9E-17 124.0 12.3 119 138-264 213-340 (378)
97 PF05219 DREV: DREV methyltran 99.4 7.6E-13 1.6E-17 115.9 10.1 149 160-321 94-243 (265)
98 COG4123 Predicted O-methyltran 99.4 4.7E-12 1E-16 111.3 14.8 133 157-319 41-195 (248)
99 KOG2940 Predicted methyltransf 99.4 1.3E-12 2.9E-17 111.1 10.7 153 160-316 72-225 (325)
100 PRK00312 pcm protein-L-isoaspa 99.4 1.8E-12 4E-17 113.6 12.1 102 157-265 75-176 (212)
101 PRK13256 thiopurine S-methyltr 99.4 1.6E-11 3.5E-16 107.4 17.8 163 160-342 43-224 (226)
102 PRK11805 N5-glutamine S-adenos 99.4 2.4E-12 5.3E-17 118.7 13.4 102 162-264 135-263 (307)
103 KOG1541 Predicted protein carb 99.4 1.5E-12 3.2E-17 110.3 10.7 101 160-266 50-162 (270)
104 PRK11188 rrmJ 23S rRNA methylt 99.4 4.6E-12 1E-16 110.6 13.9 97 159-267 50-168 (209)
105 TIGR00536 hemK_fam HemK family 99.4 5.1E-12 1.1E-16 115.7 14.3 103 162-265 116-245 (284)
106 PF06325 PrmA: Ribosomal prote 99.4 2E-12 4.4E-17 117.6 11.5 122 159-317 160-282 (295)
107 PHA03411 putative methyltransf 99.4 5.1E-12 1.1E-16 112.7 13.2 140 160-329 64-225 (279)
108 KOG3045 Predicted RNA methylas 99.4 9.9E-12 2.1E-16 107.6 13.1 110 160-316 180-289 (325)
109 PRK09328 N5-glutamine S-adenos 99.4 1.7E-11 3.7E-16 111.7 15.3 126 159-316 107-260 (275)
110 PRK09489 rsmC 16S ribosomal RN 99.4 4.3E-12 9.3E-17 118.6 11.2 101 161-265 197-304 (342)
111 PRK14966 unknown domain/N5-glu 99.4 2.1E-11 4.6E-16 115.0 15.3 125 160-316 251-403 (423)
112 PF05724 TPMT: Thiopurine S-me 99.4 1.3E-11 2.9E-16 108.0 13.0 165 158-341 35-216 (218)
113 cd02440 AdoMet_MTases S-adenos 99.3 9.9E-12 2.1E-16 94.6 10.8 100 163-263 1-103 (107)
114 PRK14901 16S rRNA methyltransf 99.3 3.7E-11 8E-16 116.4 17.2 109 157-266 249-386 (434)
115 COG2519 GCD14 tRNA(1-methylade 99.3 2.6E-11 5.7E-16 105.7 13.6 105 156-266 90-197 (256)
116 PRK13168 rumA 23S rRNA m(5)U19 99.3 3.2E-11 7E-16 117.1 15.0 136 158-328 295-434 (443)
117 PRK03522 rumB 23S rRNA methylu 99.3 7E-11 1.5E-15 109.7 16.1 134 160-329 173-307 (315)
118 PRK01544 bifunctional N5-gluta 99.3 1.9E-11 4.2E-16 120.0 12.9 126 160-316 138-291 (506)
119 PF03291 Pox_MCEL: mRNA cappin 99.3 2.2E-11 4.8E-16 112.9 12.0 109 160-268 62-190 (331)
120 PF12147 Methyltransf_20: Puta 99.3 6.8E-11 1.5E-15 104.9 14.2 152 159-317 134-297 (311)
121 PRK01581 speE spermidine synth 99.3 1E-10 2.2E-15 108.2 16.0 147 159-331 149-309 (374)
122 PRK14904 16S rRNA methyltransf 99.3 6.8E-11 1.5E-15 114.9 15.4 110 157-268 247-381 (445)
123 PRK13943 protein-L-isoaspartat 99.3 1.4E-11 3.1E-16 113.8 10.0 101 157-264 77-180 (322)
124 PRK10901 16S rRNA methyltransf 99.3 1.4E-10 3.1E-15 112.1 16.9 108 157-266 241-374 (427)
125 TIGR00563 rsmB ribosomal RNA s 99.3 2.6E-10 5.7E-15 110.3 18.5 111 157-267 235-371 (426)
126 COG2518 Pcm Protein-L-isoaspar 99.3 3.3E-11 7.1E-16 102.9 10.7 102 157-265 69-170 (209)
127 PF00891 Methyltransf_2: O-met 99.3 9.5E-11 2.1E-15 104.8 14.1 98 158-266 98-201 (241)
128 PRK04457 spermidine synthase; 99.3 4.4E-11 9.5E-16 108.0 11.5 108 160-267 66-180 (262)
129 PRK14902 16S rRNA methyltransf 99.2 2.4E-10 5.2E-15 111.2 16.7 109 157-266 247-381 (444)
130 PRK15128 23S rRNA m(5)C1962 me 99.2 5.8E-11 1.3E-15 112.9 12.1 107 160-266 220-341 (396)
131 PRK11783 rlmL 23S rRNA m(2)G24 99.2 7.1E-11 1.5E-15 120.6 13.4 129 160-318 538-680 (702)
132 TIGR00479 rumA 23S rRNA (uraci 99.2 1.8E-10 4E-15 111.6 15.7 137 158-328 290-430 (431)
133 COG2890 HemK Methylase of poly 99.2 1.4E-10 3.1E-15 105.4 13.4 122 163-317 113-262 (280)
134 PRK14903 16S rRNA methyltransf 99.2 7.5E-11 1.6E-15 113.8 12.0 111 157-268 234-370 (431)
135 TIGR03704 PrmC_rel_meth putati 99.2 2.6E-10 5.5E-15 102.4 14.3 121 161-315 87-237 (251)
136 TIGR00446 nop2p NOL1/NOP2/sun 99.2 1.1E-10 2.4E-15 105.7 11.9 110 157-267 68-202 (264)
137 PF01135 PCMT: Protein-L-isoas 99.2 4.2E-11 9.1E-16 104.0 8.6 102 157-265 69-173 (209)
138 TIGR00438 rrmJ cell division p 99.2 9.4E-11 2E-15 100.8 10.7 98 157-266 29-148 (188)
139 KOG1499 Protein arginine N-met 99.2 4.5E-11 9.7E-16 108.7 8.9 137 118-262 23-165 (346)
140 PRK03612 spermidine synthase; 99.2 1.7E-10 3.7E-15 114.0 13.4 145 160-331 297-455 (521)
141 PLN02781 Probable caffeoyl-CoA 99.2 9.5E-11 2.1E-15 104.1 10.5 103 159-264 67-178 (234)
142 COG2813 RsmC 16S RNA G1207 met 99.2 1.5E-10 3.3E-15 103.9 11.7 119 137-265 142-267 (300)
143 PF02390 Methyltransf_4: Putat 99.2 2.2E-10 4.7E-15 98.8 12.3 102 162-269 19-138 (195)
144 PF08704 GCD14: tRNA methyltra 99.2 1.8E-10 4E-15 102.1 12.1 128 156-317 36-170 (247)
145 PF07942 N2227: N2227-like pro 99.2 1.6E-09 3.5E-14 96.9 18.1 163 138-318 37-242 (270)
146 PRK00811 spermidine synthase; 99.2 1.3E-10 2.9E-15 106.1 11.2 107 160-266 76-193 (283)
147 KOG1975 mRNA cap methyltransfe 99.2 6.8E-11 1.5E-15 105.6 8.4 109 160-268 117-241 (389)
148 smart00650 rADc Ribosomal RNA 99.2 3.8E-10 8.1E-15 95.3 12.0 102 157-264 10-113 (169)
149 TIGR02085 meth_trns_rumB 23S r 99.1 1.5E-09 3.3E-14 103.0 16.1 134 160-329 233-367 (374)
150 COG2521 Predicted archaeal met 99.1 2.5E-10 5.5E-15 97.7 9.0 140 156-317 130-276 (287)
151 COG0220 Predicted S-adenosylme 99.1 2E-09 4.3E-14 94.4 14.3 154 162-316 50-220 (227)
152 PF11968 DUF3321: Putative met 99.1 1.2E-09 2.5E-14 93.5 11.0 118 161-317 52-180 (219)
153 COG2263 Predicted RNA methylas 99.1 7.8E-09 1.7E-13 86.3 15.6 148 157-344 42-196 (198)
154 PHA03412 putative methyltransf 99.1 8.8E-10 1.9E-14 96.3 10.3 145 161-329 50-213 (241)
155 PRK10909 rsmD 16S rRNA m(2)G96 99.1 2.1E-09 4.6E-14 92.7 12.5 105 160-266 53-161 (199)
156 PF06080 DUF938: Protein of un 99.1 3.1E-09 6.8E-14 90.7 13.1 157 163-323 28-197 (204)
157 PRK11727 23S rRNA mA1618 methy 99.1 6.7E-09 1.4E-13 95.7 16.2 182 134-325 88-299 (321)
158 PF01739 CheR: CheR methyltran 99.1 5.7E-10 1.2E-14 95.9 8.4 105 160-264 31-175 (196)
159 PLN02672 methionine S-methyltr 99.0 3.3E-09 7.2E-14 110.9 15.1 105 160-264 118-278 (1082)
160 PF01596 Methyltransf_3: O-met 99.0 9.5E-10 2.1E-14 95.3 9.3 103 160-265 45-156 (205)
161 PLN02366 spermidine synthase 99.0 1.7E-09 3.7E-14 99.5 11.5 106 160-265 91-207 (308)
162 PF05185 PRMT5: PRMT5 arginine 99.0 1.8E-09 3.8E-14 104.2 11.6 102 160-262 186-295 (448)
163 PF10294 Methyltransf_16: Puta 99.0 1.7E-09 3.6E-14 91.6 10.2 108 158-266 43-158 (173)
164 TIGR00417 speE spermidine synt 99.0 2.2E-09 4.7E-14 97.6 11.1 107 160-266 72-188 (270)
165 KOG2899 Predicted methyltransf 99.0 5.9E-09 1.3E-13 89.9 12.4 150 158-315 56-254 (288)
166 PLN02476 O-methyltransferase 99.0 2.6E-09 5.7E-14 96.2 10.4 103 159-264 117-228 (278)
167 PRK10611 chemotaxis methyltran 99.0 1.3E-09 2.7E-14 99.0 7.9 104 161-264 116-262 (287)
168 PRK05031 tRNA (uracil-5-)-meth 99.0 7.6E-09 1.6E-13 97.8 13.4 131 162-329 208-354 (362)
169 COG4122 Predicted O-methyltran 99.0 4.7E-09 1E-13 91.1 9.9 104 159-265 58-167 (219)
170 TIGR02143 trmA_only tRNA (urac 98.9 5.6E-08 1.2E-12 91.6 16.0 130 162-328 199-344 (353)
171 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.9 2.7E-08 5.9E-13 88.6 13.0 164 157-344 53-256 (256)
172 PLN02589 caffeoyl-CoA O-methyl 98.9 1.9E-08 4.2E-13 89.5 11.8 102 160-264 79-190 (247)
173 KOG1269 SAM-dependent methyltr 98.9 3.6E-09 7.7E-14 99.0 7.3 111 157-267 107-218 (364)
174 COG2265 TrmA SAM-dependent met 98.9 3.8E-08 8.3E-13 94.4 14.3 157 131-328 271-430 (432)
175 KOG3178 Hydroxyindole-O-methyl 98.9 1.5E-08 3.3E-13 92.5 10.9 148 161-320 178-332 (342)
176 COG1041 Predicted DNA modifica 98.9 2.6E-08 5.7E-13 91.3 11.6 109 156-265 193-311 (347)
177 COG1092 Predicted SAM-dependen 98.8 2E-08 4.3E-13 94.7 10.9 107 160-266 217-338 (393)
178 PF02475 Met_10: Met-10+ like- 98.8 2.3E-08 4.9E-13 86.2 9.9 98 159-261 100-199 (200)
179 TIGR00095 RNA methyltransferas 98.8 3.7E-08 8E-13 84.6 11.2 105 160-265 49-160 (189)
180 TIGR00478 tly hemolysin TlyA f 98.8 3.5E-08 7.6E-13 86.8 11.1 141 159-326 74-222 (228)
181 PRK14896 ksgA 16S ribosomal RN 98.8 3.5E-08 7.7E-13 89.1 11.3 76 157-237 26-101 (258)
182 KOG2904 Predicted methyltransf 98.8 3.8E-08 8.1E-13 86.5 10.6 107 160-266 148-287 (328)
183 PRK00536 speE spermidine synth 98.8 6.1E-08 1.3E-12 86.8 12.0 101 159-267 71-174 (262)
184 PTZ00338 dimethyladenosine tra 98.8 4E-08 8.8E-13 90.0 11.0 77 157-235 33-109 (294)
185 PRK00274 ksgA 16S ribosomal RN 98.8 3.5E-08 7.5E-13 89.8 10.4 75 157-235 39-113 (272)
186 PF10672 Methyltrans_SAM: S-ad 98.8 3E-08 6.5E-13 89.9 9.4 108 160-267 123-241 (286)
187 KOG1500 Protein arginine N-met 98.8 9.9E-08 2.2E-12 85.9 12.4 105 157-264 174-282 (517)
188 COG1352 CheR Methylase of chem 98.8 8E-08 1.7E-12 86.2 11.5 106 160-265 96-242 (268)
189 PF02527 GidB: rRNA small subu 98.8 5.1E-08 1.1E-12 83.0 9.3 96 163-264 51-148 (184)
190 PF05958 tRNA_U5-meth_tr: tRNA 98.7 1.5E-07 3.2E-12 88.7 13.2 146 132-328 176-343 (352)
191 PF03141 Methyltransf_29: Puta 98.7 4.4E-09 9.5E-14 100.0 2.6 98 162-265 119-220 (506)
192 PRK01544 bifunctional N5-gluta 98.7 8.9E-08 1.9E-12 94.3 11.6 107 160-267 347-465 (506)
193 COG3963 Phospholipid N-methylt 98.7 2.1E-07 4.7E-12 75.9 11.6 105 157-267 45-159 (194)
194 KOG3987 Uncharacterized conser 98.7 9.2E-10 2E-14 92.5 -2.6 150 159-321 111-263 (288)
195 COG2520 Predicted methyltransf 98.7 1.4E-07 3E-12 87.1 11.5 128 160-314 188-316 (341)
196 PRK04338 N(2),N(2)-dimethylgua 98.7 1.6E-07 3.5E-12 89.1 12.2 98 161-263 58-157 (382)
197 PF01170 UPF0020: Putative RNA 98.7 2.2E-07 4.9E-12 79.0 11.7 107 156-263 24-149 (179)
198 COG0421 SpeE Spermidine syntha 98.7 2.5E-07 5.4E-12 83.8 12.2 105 162-266 78-192 (282)
199 TIGR00755 ksgA dimethyladenosi 98.7 4.5E-07 9.8E-12 81.6 13.9 74 157-235 26-102 (253)
200 PLN02823 spermine synthase 98.7 2E-07 4.3E-12 86.8 11.5 104 160-264 103-220 (336)
201 KOG0820 Ribosomal RNA adenine 98.7 1.8E-07 3.8E-12 82.2 10.1 77 156-234 54-130 (315)
202 PF03602 Cons_hypoth95: Conser 98.6 8.2E-08 1.8E-12 81.9 7.4 107 160-267 42-156 (183)
203 KOG1661 Protein-L-isoaspartate 98.6 2.2E-07 4.7E-12 78.7 9.3 102 158-265 80-194 (237)
204 PF01564 Spermine_synth: Sperm 98.6 6.7E-07 1.5E-11 80.0 11.9 107 160-266 76-193 (246)
205 COG0357 GidB Predicted S-adeno 98.6 9.4E-07 2E-11 76.6 12.3 130 161-322 68-199 (215)
206 PRK04148 hypothetical protein; 98.6 7.6E-07 1.6E-11 71.2 10.6 95 160-267 16-112 (134)
207 COG0500 SmtA SAM-dependent met 98.6 7.8E-07 1.7E-11 72.5 10.9 102 164-268 52-159 (257)
208 KOG2798 Putative trehalase [Ca 98.5 2E-06 4.4E-11 77.1 13.5 149 159-320 149-339 (369)
209 PRK11933 yebU rRNA (cytosine-C 98.5 8.6E-07 1.9E-11 86.1 11.7 110 157-267 110-245 (470)
210 KOG3191 Predicted N6-DNA-methy 98.5 2E-06 4.4E-11 71.3 11.6 123 161-315 44-190 (209)
211 KOG3420 Predicted RNA methylas 98.5 1.5E-07 3.3E-12 74.9 4.5 80 157-238 45-125 (185)
212 PF04816 DUF633: Family of unk 98.4 4.8E-06 1E-10 72.2 12.4 120 164-316 1-122 (205)
213 TIGR00308 TRM1 tRNA(guanine-26 98.4 3.4E-06 7.3E-11 79.8 12.1 98 161-263 45-146 (374)
214 PF09445 Methyltransf_15: RNA 98.4 6.2E-07 1.3E-11 74.4 6.2 72 163-234 2-76 (163)
215 COG0742 N6-adenine-specific me 98.4 5.7E-06 1.2E-10 69.8 12.0 108 159-266 42-156 (187)
216 KOG1663 O-methyltransferase [S 98.4 5.3E-06 1.2E-10 71.6 11.9 102 160-264 73-183 (237)
217 COG4798 Predicted methyltransf 98.4 6.1E-06 1.3E-10 69.1 11.6 174 156-345 44-237 (238)
218 COG0030 KsgA Dimethyladenosine 98.3 4.7E-06 1E-10 74.2 10.9 76 156-234 26-102 (259)
219 PF01728 FtsJ: FtsJ-like methy 98.3 1E-06 2.2E-11 75.2 6.4 95 160-266 23-141 (181)
220 PF09243 Rsm22: Mitochondrial 98.3 5.9E-06 1.3E-10 75.2 11.7 107 158-267 31-142 (274)
221 COG0144 Sun tRNA and rRNA cyto 98.3 3E-05 6.5E-10 73.1 16.6 111 156-267 152-291 (355)
222 KOG2915 tRNA(1-methyladenosine 98.3 2.7E-05 5.8E-10 68.7 14.7 100 157-261 102-206 (314)
223 PF04672 Methyltransf_19: S-ad 98.3 1.3E-05 2.9E-10 71.4 12.9 171 162-345 70-267 (267)
224 TIGR03439 methyl_EasF probable 98.3 1.1E-05 2.5E-10 74.5 13.0 104 160-264 76-197 (319)
225 KOG1331 Predicted methyltransf 98.3 5.6E-07 1.2E-11 79.9 3.8 97 160-265 45-144 (293)
226 COG1189 Predicted rRNA methyla 98.3 3.1E-05 6.7E-10 67.4 13.9 163 158-345 77-243 (245)
227 COG4262 Predicted spermidine s 98.2 1.2E-05 2.7E-10 73.5 11.5 142 159-330 288-446 (508)
228 PRK00050 16S rRNA m(4)C1402 me 98.2 5.1E-06 1.1E-10 75.8 8.1 78 157-237 16-100 (296)
229 COG4627 Uncharacterized protei 98.2 6E-07 1.3E-11 72.3 1.3 102 211-314 31-134 (185)
230 COG3897 Predicted methyltransf 98.1 8.2E-06 1.8E-10 68.6 7.5 107 157-268 76-183 (218)
231 COG0293 FtsJ 23S rRNA methylas 98.1 4.9E-05 1.1E-09 65.2 12.1 98 158-267 43-162 (205)
232 PRK11783 rlmL 23S rRNA m(2)G24 98.1 3.2E-05 6.9E-10 79.5 12.9 110 159-268 189-351 (702)
233 PF02384 N6_Mtase: N-6 DNA Met 98.1 1.3E-05 2.9E-10 74.3 9.4 110 157-266 43-185 (311)
234 PF03059 NAS: Nicotianamine sy 98.1 2E-05 4.4E-10 71.0 10.0 105 160-264 120-230 (276)
235 KOG2352 Predicted spermine/spe 98.1 7.5E-05 1.6E-09 71.3 13.5 102 162-265 50-162 (482)
236 KOG3201 Uncharacterized conser 98.1 2E-06 4.4E-11 69.8 2.6 134 160-321 29-169 (201)
237 PRK11760 putative 23S rRNA C24 98.1 2E-05 4.3E-10 72.6 9.2 88 158-257 209-296 (357)
238 COG4076 Predicted RNA methylas 98.0 2.3E-05 5E-10 65.4 7.9 114 136-263 19-134 (252)
239 KOG2187 tRNA uracil-5-methyltr 98.0 9.9E-06 2.2E-10 77.5 6.4 83 131-221 361-443 (534)
240 PF13679 Methyltransf_32: Meth 98.0 4E-05 8.7E-10 62.5 9.2 101 159-265 24-132 (141)
241 KOG1709 Guanidinoacetate methy 98.0 3.6E-05 7.9E-10 65.6 8.9 104 159-264 100-206 (271)
242 COG0116 Predicted N6-adenine-s 98.0 0.00014 3E-09 68.0 13.1 109 156-264 187-344 (381)
243 PF00398 RrnaAD: Ribosomal RNA 97.9 0.0001 2.3E-09 66.6 10.5 94 157-256 27-123 (262)
244 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.9 8.9E-05 1.9E-09 67.8 9.9 109 157-266 82-221 (283)
245 PF08123 DOT1: Histone methyla 97.8 8.6E-05 1.9E-09 64.4 8.7 106 157-263 39-157 (205)
246 KOG2730 Methylase [General fun 97.8 3.2E-05 6.9E-10 66.2 4.7 75 160-234 94-172 (263)
247 PF13578 Methyltransf_24: Meth 97.7 1.4E-05 3.1E-10 61.7 2.0 98 165-264 1-105 (106)
248 PLN02668 indole-3-acetate carb 97.7 0.0013 2.8E-08 62.2 15.0 161 160-320 63-311 (386)
249 TIGR02987 met_A_Alw26 type II 97.7 0.0003 6.4E-09 70.2 11.3 75 160-235 31-120 (524)
250 PF06962 rRNA_methylase: Putat 97.7 0.00036 7.8E-09 56.3 9.4 82 184-267 1-95 (140)
251 PF05971 Methyltransf_10: Prot 97.7 0.00042 9.1E-09 63.2 10.6 189 135-329 80-292 (299)
252 PF01269 Fibrillarin: Fibrilla 97.6 0.00058 1.2E-08 59.1 10.5 124 131-264 49-178 (229)
253 TIGR01444 fkbM_fam methyltrans 97.6 0.00014 3E-09 59.2 6.3 57 163-220 1-59 (143)
254 COG2384 Predicted SAM-dependen 97.5 0.0039 8.5E-08 53.8 13.6 94 160-255 16-111 (226)
255 KOG3115 Methyltransferase-like 97.5 0.00059 1.3E-08 57.9 7.8 107 160-268 60-187 (249)
256 COG1889 NOP1 Fibrillarin-like 97.4 0.0061 1.3E-07 51.8 13.5 123 131-264 52-180 (231)
257 KOG4589 Cell division protein 97.4 0.0019 4.1E-08 54.1 10.1 100 158-269 67-189 (232)
258 PF03492 Methyltransf_7: SAM d 97.4 0.0021 4.5E-08 60.2 11.5 159 159-320 15-255 (334)
259 PF04989 CmcI: Cephalosporin h 97.4 0.0013 2.9E-08 56.6 9.0 117 136-266 19-149 (206)
260 PF07091 FmrO: Ribosomal RNA m 97.3 0.00076 1.7E-08 59.5 7.0 105 159-267 104-211 (251)
261 PRK10742 putative methyltransf 97.3 0.0013 2.9E-08 58.2 8.3 83 157-239 83-176 (250)
262 KOG1122 tRNA and rRNA cytosine 97.1 0.0025 5.3E-08 59.9 8.8 110 156-267 237-374 (460)
263 PF03141 Methyltransf_29: Puta 97.1 0.0018 4E-08 62.3 7.8 96 161-265 366-468 (506)
264 KOG0822 Protein kinase inhibit 97.1 0.0022 4.8E-08 61.8 8.2 131 134-266 341-480 (649)
265 TIGR00027 mthyl_TIGR00027 meth 97.0 0.072 1.6E-06 48.1 17.2 171 136-316 65-248 (260)
266 KOG2793 Putative N2,N2-dimethy 96.9 0.013 2.9E-07 52.0 11.4 107 160-266 86-201 (248)
267 PF03269 DUF268: Caenorhabditi 96.9 0.0022 4.9E-08 52.4 5.9 129 161-317 2-144 (177)
268 TIGR00006 S-adenosyl-methyltra 96.9 0.0053 1.1E-07 56.4 8.7 79 157-237 17-102 (305)
269 PF01861 DUF43: Protein of unk 96.9 0.037 8E-07 48.7 13.4 133 157-316 41-176 (243)
270 COG5459 Predicted rRNA methyla 96.9 0.0025 5.3E-08 58.5 6.2 110 157-268 110-229 (484)
271 PF07757 AdoMet_MTase: Predict 96.8 0.0057 1.2E-07 46.6 6.6 34 159-192 57-90 (112)
272 KOG1501 Arginine N-methyltrans 96.8 0.0031 6.7E-08 59.5 6.2 72 162-233 68-141 (636)
273 PF02005 TRM: N2,N2-dimethylgu 96.7 0.0086 1.9E-07 56.9 8.9 101 160-264 49-154 (377)
274 KOG1227 Putative methyltransfe 96.6 0.0013 2.9E-08 59.0 2.6 101 160-265 194-298 (351)
275 COG1064 AdhP Zn-dependent alco 96.6 0.024 5.1E-07 52.8 10.6 97 156-266 162-261 (339)
276 PF04445 SAM_MT: Putative SAM- 96.3 0.0095 2E-07 52.4 6.3 78 162-239 77-163 (234)
277 COG3510 CmcI Cephalosporin hyd 96.2 0.048 1E-06 46.1 9.4 116 135-267 55-183 (237)
278 KOG1562 Spermidine synthase [A 96.2 0.018 3.9E-07 51.9 7.3 108 158-265 119-237 (337)
279 KOG2198 tRNA cytosine-5-methyl 96.2 0.054 1.2E-06 50.4 10.7 111 156-267 151-299 (375)
280 KOG1099 SAM-dependent methyltr 96.2 0.0085 1.8E-07 51.9 4.9 95 162-268 43-167 (294)
281 PRK09424 pntA NAD(P) transhydr 96.2 0.052 1.1E-06 53.6 11.0 102 156-265 160-286 (509)
282 KOG2671 Putative RNA methylase 96.1 0.023 4.9E-07 52.2 7.6 110 156-265 204-355 (421)
283 COG3129 Predicted SAM-dependen 96.1 0.034 7.3E-07 48.4 8.1 116 119-238 41-164 (292)
284 PHA01634 hypothetical protein 96.1 0.033 7.1E-07 43.8 7.2 46 160-205 28-74 (156)
285 KOG2078 tRNA modification enzy 96.0 0.007 1.5E-07 57.0 3.8 75 137-220 235-310 (495)
286 KOG4058 Uncharacterized conser 95.9 0.013 2.7E-07 47.4 4.3 99 159-262 71-170 (199)
287 PRK13699 putative methylase; P 95.8 0.027 5.8E-07 49.8 6.8 52 212-263 3-71 (227)
288 KOG2920 Predicted methyltransf 95.7 0.0062 1.3E-07 54.7 2.2 105 159-263 115-233 (282)
289 PF02636 Methyltransf_28: Puta 95.7 0.064 1.4E-06 48.2 8.9 45 160-204 18-72 (252)
290 PF11312 DUF3115: Protein of u 95.6 0.025 5.4E-07 51.7 5.9 106 160-265 86-243 (315)
291 PF11599 AviRa: RRNA methyltra 95.5 0.12 2.6E-06 44.6 9.0 105 159-263 50-213 (246)
292 PTZ00357 methyltransferase; Pr 95.4 0.13 2.7E-06 51.7 10.2 97 162-259 702-830 (1072)
293 cd08283 FDH_like_1 Glutathione 95.4 0.16 3.4E-06 48.6 10.9 105 157-265 181-307 (386)
294 PRK01747 mnmC bifunctional tRN 95.4 0.12 2.6E-06 53.2 10.6 127 160-319 57-228 (662)
295 COG1867 TRM1 N2,N2-dimethylgua 95.3 0.14 3E-06 47.8 9.5 99 161-264 53-154 (380)
296 COG4301 Uncharacterized conser 95.2 1.3 2.7E-05 39.3 14.4 106 159-264 77-193 (321)
297 cd00315 Cyt_C5_DNA_methylase C 95.1 0.063 1.4E-06 48.9 6.8 69 163-238 2-73 (275)
298 PF01795 Methyltransf_5: MraW 95.0 0.094 2E-06 48.3 7.7 77 157-235 17-101 (310)
299 KOG1596 Fibrillarin and relate 94.9 0.18 4E-06 44.2 8.5 120 131-267 132-264 (317)
300 COG1568 Predicted methyltransf 94.9 0.2 4.3E-06 44.9 8.8 101 156-266 148-262 (354)
301 KOG1253 tRNA methyltransferase 94.6 0.031 6.7E-07 53.8 3.4 103 159-265 108-217 (525)
302 TIGR00561 pntA NAD(P) transhyd 94.5 0.22 4.8E-06 49.1 9.3 98 157-262 160-282 (511)
303 PF06859 Bin3: Bicoid-interact 94.5 0.023 4.9E-07 43.6 1.9 38 227-264 1-44 (110)
304 PF01555 N6_N4_Mtase: DNA meth 94.5 0.11 2.5E-06 45.1 6.7 42 159-200 190-231 (231)
305 COG0275 Predicted S-adenosylme 94.4 0.24 5.3E-06 45.0 8.6 77 157-235 20-104 (314)
306 COG0286 HsdM Type I restrictio 94.4 0.39 8.5E-06 47.5 10.8 108 159-266 185-328 (489)
307 PRK11524 putative methyltransf 94.4 0.12 2.7E-06 47.2 6.9 46 159-204 207-252 (284)
308 COG0686 Ald Alanine dehydrogen 94.4 0.18 3.9E-06 46.0 7.6 100 160-264 167-268 (371)
309 PRK11524 putative methyltransf 94.3 0.28 6.1E-06 44.8 9.0 55 209-263 7-79 (284)
310 COG0270 Dcm Site-specific DNA 94.1 0.93 2E-05 42.4 12.2 122 161-312 3-141 (328)
311 KOG0024 Sorbitol dehydrogenase 94.0 0.33 7.3E-06 44.6 8.5 102 156-268 165-277 (354)
312 PRK13699 putative methylase; P 93.7 0.13 2.9E-06 45.4 5.4 46 159-204 162-207 (227)
313 PRK09880 L-idonate 5-dehydroge 93.5 0.45 9.7E-06 44.6 9.1 97 159-265 168-267 (343)
314 PF05430 Methyltransf_30: S-ad 93.5 0.18 3.8E-06 40.1 5.2 79 210-322 32-115 (124)
315 cd08254 hydroxyacyl_CoA_DH 6-h 93.5 0.9 1.9E-05 42.0 11.0 94 158-265 163-264 (338)
316 PF10354 DUF2431: Domain of un 93.2 0.8 1.7E-05 38.3 9.1 84 213-323 57-157 (166)
317 COG1565 Uncharacterized conser 93.0 0.56 1.2E-05 43.8 8.4 48 158-205 75-132 (370)
318 PF03514 GRAS: GRAS domain fam 92.8 7 0.00015 37.3 16.0 100 160-262 110-242 (374)
319 PF00107 ADH_zinc_N: Zinc-bind 92.8 0.46 1E-05 37.4 6.9 85 170-267 1-92 (130)
320 COG1063 Tdh Threonine dehydrog 92.8 0.44 9.6E-06 45.0 7.8 97 160-266 168-271 (350)
321 PF05711 TylF: Macrocin-O-meth 92.8 0.8 1.7E-05 40.9 8.9 125 134-267 55-215 (248)
322 KOG2539 Mitochondrial/chloropl 92.6 0.59 1.3E-05 45.0 8.1 108 159-267 199-318 (491)
323 cd05188 MDR Medium chain reduc 92.4 0.55 1.2E-05 41.6 7.6 97 159-265 133-233 (271)
324 PRK10458 DNA cytosine methylas 91.9 4.6 0.0001 39.6 13.7 59 160-221 87-146 (467)
325 COG3315 O-Methyltransferase in 91.8 6.3 0.00014 36.3 13.8 155 161-316 93-262 (297)
326 PF00145 DNA_methylase: C-5 cy 91.6 0.48 1E-05 43.8 6.5 66 163-237 2-71 (335)
327 PRK05786 fabG 3-ketoacyl-(acyl 90.8 3.9 8.4E-05 35.6 11.2 103 160-265 4-136 (238)
328 KOG1098 Putative SAM-dependent 90.5 1.3 2.7E-05 44.2 8.1 97 159-267 43-161 (780)
329 cd08230 glucose_DH Glucose deh 90.3 1.5 3.3E-05 41.2 8.6 96 158-265 170-270 (355)
330 PRK08265 short chain dehydroge 90.3 3.2 7E-05 37.0 10.4 73 160-237 5-90 (261)
331 KOG1201 Hydroxysteroid 17-beta 90.2 2.3 4.9E-05 38.8 9.0 80 159-241 36-128 (300)
332 TIGR00675 dcm DNA-methyltransf 90.0 0.65 1.4E-05 43.2 5.7 67 164-237 1-69 (315)
333 cd08232 idonate-5-DH L-idonate 89.9 1.7 3.8E-05 40.3 8.6 92 160-264 165-262 (339)
334 TIGR00518 alaDH alanine dehydr 89.8 1.1 2.3E-05 42.8 7.1 101 159-264 165-267 (370)
335 PRK05867 short chain dehydroge 89.6 4.4 9.5E-05 35.8 10.6 77 160-238 8-97 (253)
336 COG2933 Predicted SAM-dependen 89.4 2.1 4.5E-05 38.3 7.9 89 157-257 208-296 (358)
337 PRK12939 short chain dehydroge 89.2 3.9 8.6E-05 35.8 10.0 75 160-237 6-94 (250)
338 TIGR02822 adh_fam_2 zinc-bindi 89.2 3.9 8.4E-05 38.1 10.3 92 157-265 162-255 (329)
339 KOG2918 Carboxymethyl transfer 88.9 19 0.00041 33.2 14.0 173 136-319 69-278 (335)
340 PRK08267 short chain dehydroge 88.9 4.2 9.1E-05 36.1 10.0 72 163-238 3-88 (260)
341 PRK06701 short chain dehydroge 88.8 3.3 7.2E-05 37.8 9.4 103 160-264 45-181 (290)
342 PF11899 DUF3419: Protein of u 88.4 0.92 2E-05 43.2 5.5 58 209-266 275-336 (380)
343 PRK07066 3-hydroxybutyryl-CoA 88.4 2.3 4.9E-05 39.7 8.0 99 162-265 8-120 (321)
344 cd00401 AdoHcyase S-adenosyl-L 88.4 2.7 5.8E-05 40.6 8.7 88 159-265 200-290 (413)
345 PRK07576 short chain dehydroge 88.4 5.3 0.00012 35.7 10.3 74 160-235 8-94 (264)
346 PRK08324 short chain dehydroge 88.3 6.1 0.00013 40.9 11.9 102 160-264 421-557 (681)
347 PRK07109 short chain dehydroge 88.1 8.4 0.00018 36.0 11.8 76 160-237 7-95 (334)
348 PRK09072 short chain dehydroge 88.1 4.8 0.0001 35.8 9.9 76 160-238 4-91 (263)
349 PRK06914 short chain dehydroge 87.9 6.3 0.00014 35.4 10.6 77 161-237 3-91 (280)
350 PRK07806 short chain dehydroge 87.9 6.8 0.00015 34.3 10.7 102 160-263 5-133 (248)
351 KOG2651 rRNA adenine N-6-methy 87.9 1.8 3.9E-05 40.7 6.8 41 160-200 153-194 (476)
352 PRK06124 gluconate 5-dehydroge 87.5 11 0.00023 33.3 11.8 76 160-237 10-98 (256)
353 PRK06181 short chain dehydroge 87.4 5.1 0.00011 35.6 9.6 73 162-237 2-88 (263)
354 cd08237 ribitol-5-phosphate_DH 87.3 4.5 9.8E-05 37.8 9.5 93 158-265 161-257 (341)
355 PRK09242 tropinone reductase; 87.3 10 0.00023 33.4 11.5 78 160-237 8-98 (257)
356 PRK07097 gluconate 5-dehydroge 86.9 8.9 0.00019 34.1 10.9 76 160-237 9-97 (265)
357 PF07279 DUF1442: Protein of u 86.7 8 0.00017 33.6 9.7 98 160-263 41-147 (218)
358 PRK05808 3-hydroxybutyryl-CoA 86.4 4.4 9.6E-05 36.8 8.7 98 163-266 5-120 (282)
359 TIGR03451 mycoS_dep_FDH mycoth 86.3 7.9 0.00017 36.3 10.6 99 157-265 173-277 (358)
360 KOG0821 Predicted ribosomal RN 86.2 4.7 0.0001 35.1 8.0 63 156-220 46-109 (326)
361 cd08245 CAD Cinnamyl alcohol d 86.1 7.2 0.00016 35.9 10.1 94 158-264 160-256 (330)
362 cd08234 threonine_DH_like L-th 86.1 7.1 0.00015 36.0 10.1 95 157-264 156-257 (334)
363 PLN03154 putative allyl alcoho 86.1 4.7 0.0001 37.8 9.0 98 157-264 155-258 (348)
364 PRK07814 short chain dehydroge 86.0 11 0.00024 33.5 11.1 75 160-236 9-96 (263)
365 PF02254 TrkA_N: TrkA-N domain 85.9 8.3 0.00018 29.5 8.9 85 169-266 4-98 (116)
366 PRK07417 arogenate dehydrogena 85.9 3.9 8.4E-05 37.2 8.0 84 163-260 2-87 (279)
367 PRK07326 short chain dehydroge 85.6 13 0.00028 32.2 11.1 74 160-237 5-92 (237)
368 PRK07523 gluconate 5-dehydroge 85.6 8.3 0.00018 34.0 9.9 75 160-237 9-97 (255)
369 PRK08213 gluconate 5-dehydroge 85.4 9 0.0002 33.9 10.1 75 160-237 11-99 (259)
370 cd08281 liver_ADH_like1 Zinc-d 85.2 7.6 0.00017 36.7 10.0 96 157-265 188-291 (371)
371 PRK06500 short chain dehydroge 85.1 14 0.00029 32.4 11.1 73 160-237 5-90 (249)
372 TIGR01202 bchC 2-desacetyl-2-h 85.1 5 0.00011 36.9 8.5 86 160-265 144-232 (308)
373 PRK11730 fadB multifunctional 84.5 4.7 0.0001 42.0 8.7 101 162-268 314-432 (715)
374 cd08261 Zn_ADH7 Alcohol dehydr 84.4 12 0.00025 34.7 10.7 98 157-264 156-258 (337)
375 PRK07831 short chain dehydroge 84.3 10 0.00022 33.6 10.0 79 159-237 15-107 (262)
376 TIGR03366 HpnZ_proposed putati 84.1 4.9 0.00011 36.3 7.8 94 159-265 119-219 (280)
377 PRK07231 fabG 3-ketoacyl-(acyl 84.1 18 0.00038 31.6 11.3 75 160-237 4-91 (251)
378 PRK13394 3-hydroxybutyrate deh 84.0 13 0.00027 32.8 10.4 77 160-238 6-95 (262)
379 KOG0725 Reductases with broad 84.0 21 0.00045 32.4 11.8 82 159-240 6-102 (270)
380 KOG2352 Predicted spermine/spe 83.9 1.9 4.1E-05 41.9 5.1 107 160-267 295-419 (482)
381 PRK05872 short chain dehydroge 83.8 13 0.00028 33.9 10.6 76 160-238 8-96 (296)
382 PRK05854 short chain dehydroge 83.8 8 0.00017 35.7 9.3 80 159-238 12-104 (313)
383 COG1255 Uncharacterized protei 83.8 4.1 8.9E-05 31.6 5.8 88 161-265 14-103 (129)
384 cd05278 FDH_like Formaldehyde 83.7 12 0.00026 34.6 10.6 98 157-264 164-267 (347)
385 PRK05650 short chain dehydroge 83.5 11 0.00023 33.7 9.8 74 163-238 2-88 (270)
386 cd08294 leukotriene_B4_DH_like 83.4 13 0.00029 34.0 10.6 93 157-263 140-240 (329)
387 PRK07819 3-hydroxybutyryl-CoA 83.4 6 0.00013 36.2 8.1 99 162-266 6-123 (286)
388 PRK07774 short chain dehydroge 83.3 9.6 0.00021 33.4 9.3 75 160-237 5-93 (250)
389 PRK06128 oxidoreductase; Provi 83.3 20 0.00044 32.6 11.7 102 160-263 54-190 (300)
390 PLN03209 translocon at the inn 83.0 14 0.00029 37.3 10.8 78 159-237 78-169 (576)
391 cd08239 THR_DH_like L-threonin 82.9 4.7 0.0001 37.4 7.4 99 157-265 160-263 (339)
392 TIGR02825 B4_12hDH leukotriene 82.7 15 0.00032 33.9 10.6 97 157-264 135-237 (325)
393 cd08255 2-desacetyl-2-hydroxye 82.5 11 0.00024 33.7 9.4 94 157-264 94-190 (277)
394 PLN02586 probable cinnamyl alc 82.4 7.7 0.00017 36.6 8.7 95 159-265 182-279 (360)
395 PRK08217 fabG 3-ketoacyl-(acyl 82.4 7.3 0.00016 34.1 8.1 75 160-236 4-91 (253)
396 PRK11154 fadJ multifunctional 82.3 11 0.00024 39.2 10.4 102 161-268 309-429 (708)
397 PF03721 UDPG_MGDP_dh_N: UDP-g 82.2 11 0.00024 32.1 8.7 96 163-262 2-118 (185)
398 TIGR00936 ahcY adenosylhomocys 82.0 8.5 0.00018 37.1 8.7 88 159-265 193-283 (406)
399 PRK09260 3-hydroxybutyryl-CoA 81.6 4.1 8.8E-05 37.2 6.3 99 163-266 3-119 (288)
400 cd08236 sugar_DH NAD(P)-depend 81.3 6.3 0.00014 36.6 7.6 95 157-264 156-258 (343)
401 PRK06035 3-hydroxyacyl-CoA deh 81.2 7 0.00015 35.7 7.7 95 162-262 4-119 (291)
402 PRK12429 3-hydroxybutyrate deh 81.0 20 0.00043 31.4 10.5 74 161-237 4-91 (258)
403 PF02153 PDH: Prephenate dehyd 81.0 4.7 0.0001 36.2 6.4 78 174-265 1-80 (258)
404 PRK07063 short chain dehydroge 81.0 7.9 0.00017 34.3 7.9 78 160-237 6-96 (260)
405 TIGR03201 dearomat_had 6-hydro 80.9 10 0.00022 35.4 8.9 99 157-265 163-273 (349)
406 PRK12937 short chain dehydroge 80.9 29 0.00063 30.1 11.4 103 160-264 4-139 (245)
407 PRK06249 2-dehydropantoate 2-r 80.8 12 0.00027 34.5 9.3 100 160-264 4-106 (313)
408 COG4017 Uncharacterized protei 80.7 4.7 0.0001 34.3 5.7 88 159-266 43-131 (254)
409 PF14740 DUF4471: Domain of un 80.7 4 8.6E-05 37.3 5.7 67 225-315 220-286 (289)
410 cd05285 sorbitol_DH Sorbitol d 80.7 19 0.00042 33.4 10.7 98 157-264 159-265 (343)
411 cd08293 PTGR2 Prostaglandin re 80.6 19 0.00042 33.3 10.7 90 162-264 156-254 (345)
412 PF02737 3HCDH_N: 3-hydroxyacy 80.5 5.4 0.00012 33.7 6.3 100 163-268 1-118 (180)
413 PRK05562 precorrin-2 dehydroge 80.5 19 0.00042 31.6 9.8 65 160-234 24-92 (223)
414 PRK08177 short chain dehydroge 80.4 17 0.00036 31.4 9.6 68 163-237 3-81 (225)
415 PRK07985 oxidoreductase; Provi 80.3 19 0.00041 32.8 10.3 102 160-263 48-184 (294)
416 PRK12481 2-deoxy-D-gluconate 3 80.2 19 0.00041 31.8 10.0 74 160-237 7-93 (251)
417 cd08295 double_bond_reductase_ 80.2 12 0.00026 34.7 9.1 98 157-264 148-251 (338)
418 PRK06101 short chain dehydroge 80.1 28 0.0006 30.4 11.0 53 163-221 3-58 (240)
419 COG0604 Qor NADPH:quinone redu 79.7 9.1 0.0002 35.7 8.0 98 157-265 139-242 (326)
420 PRK07502 cyclohexadienyl dehyd 79.4 10 0.00023 34.8 8.3 88 162-262 7-98 (307)
421 PRK06484 short chain dehydroge 79.3 20 0.00044 35.5 10.9 100 160-264 268-400 (520)
422 PRK12829 short chain dehydroge 79.3 14 0.0003 32.7 8.9 75 159-237 9-96 (264)
423 PF01555 N6_N4_Mtase: DNA meth 79.2 5.3 0.00011 34.5 6.0 24 243-266 35-58 (231)
424 PRK10309 galactitol-1-phosphat 79.0 12 0.00026 34.8 8.8 99 157-265 157-261 (347)
425 PLN02740 Alcohol dehydrogenase 79.0 22 0.00047 33.8 10.6 96 157-265 195-301 (381)
426 PRK05565 fabG 3-ketoacyl-(acyl 79.0 23 0.00051 30.7 10.2 74 161-237 5-93 (247)
427 PRK05708 2-dehydropantoate 2-r 78.7 14 0.00031 34.0 8.9 98 162-264 3-104 (305)
428 TIGR01832 kduD 2-deoxy-D-gluco 78.4 20 0.00044 31.3 9.6 74 160-237 4-90 (248)
429 PRK12742 oxidoreductase; Provi 78.3 33 0.00071 29.7 10.9 98 160-264 5-131 (237)
430 PRK12744 short chain dehydroge 77.6 25 0.00055 31.0 10.1 102 160-263 7-144 (257)
431 PRK06079 enoyl-(acyl carrier p 77.5 37 0.0008 30.0 11.1 73 160-237 6-93 (252)
432 PRK06114 short chain dehydroge 77.5 39 0.00085 29.7 11.3 77 160-238 7-97 (254)
433 PRK07533 enoyl-(acyl carrier p 77.3 27 0.0006 30.9 10.2 75 160-237 9-98 (258)
434 PRK11064 wecC UDP-N-acetyl-D-m 77.3 8.4 0.00018 37.3 7.3 38 162-199 4-43 (415)
435 PRK05855 short chain dehydroge 77.1 19 0.00041 35.9 10.1 78 160-239 314-404 (582)
436 PRK06197 short chain dehydroge 76.9 17 0.00036 33.2 8.9 78 160-237 15-105 (306)
437 PRK08251 short chain dehydroge 76.8 16 0.00035 31.9 8.5 76 162-237 3-91 (248)
438 PRK08945 putative oxoacyl-(acy 76.6 14 0.00031 32.3 8.1 79 158-237 9-102 (247)
439 PRK07890 short chain dehydroge 76.5 13 0.00027 32.8 7.8 76 160-237 4-92 (258)
440 PRK06182 short chain dehydroge 76.5 35 0.00076 30.4 10.7 71 161-239 3-86 (273)
441 PRK08293 3-hydroxybutyryl-CoA 76.4 12 0.00026 34.1 7.7 98 162-264 4-120 (287)
442 PRK08277 D-mannonate oxidoredu 76.2 13 0.00029 33.2 7.9 75 160-236 9-96 (278)
443 TIGR01470 cysG_Nterm siroheme 76.1 21 0.00045 30.9 8.7 67 160-234 8-76 (205)
444 PRK06139 short chain dehydroge 75.7 13 0.00028 34.7 7.8 76 160-237 6-94 (330)
445 PF05050 Methyltransf_21: Meth 75.6 5.8 0.00013 32.3 5.0 52 166-217 1-60 (167)
446 PRK06940 short chain dehydroge 75.4 26 0.00056 31.5 9.6 96 163-262 4-123 (275)
447 PRK07677 short chain dehydroge 75.3 13 0.00028 32.7 7.5 73 162-236 2-87 (252)
448 PRK06172 short chain dehydroge 75.3 14 0.00031 32.4 7.8 76 160-237 6-94 (253)
449 PRK06125 short chain dehydroge 75.2 18 0.0004 31.9 8.5 77 160-237 6-91 (259)
450 PRK08278 short chain dehydroge 75.2 28 0.00061 31.2 9.8 76 160-237 5-100 (273)
451 PRK08339 short chain dehydroge 74.9 15 0.00032 32.8 7.8 77 160-237 7-95 (263)
452 PLN02514 cinnamyl-alcohol dehy 74.8 22 0.00047 33.4 9.2 96 159-265 179-276 (357)
453 PRK07530 3-hydroxybutyryl-CoA 74.8 20 0.00044 32.7 8.7 99 162-266 5-121 (292)
454 cd08238 sorbose_phosphate_red 74.6 38 0.00082 32.5 11.0 101 157-263 172-287 (410)
455 cd08285 NADP_ADH NADP(H)-depen 74.5 36 0.00077 31.7 10.6 98 157-264 163-266 (351)
456 TIGR02441 fa_ox_alpha_mit fatt 74.5 9.5 0.00021 39.9 7.1 100 162-267 336-453 (737)
457 PF08484 Methyltransf_14: C-me 74.3 35 0.00075 28.3 9.2 90 160-264 67-159 (160)
458 PRK12743 oxidoreductase; Provi 74.2 37 0.0008 29.9 10.2 74 162-237 3-90 (256)
459 PRK08594 enoyl-(acyl carrier p 74.1 37 0.00081 30.1 10.2 74 160-237 6-97 (257)
460 PRK05876 short chain dehydroge 74.0 15 0.00033 33.1 7.7 76 160-237 5-93 (275)
461 PRK06522 2-dehydropantoate 2-r 74.0 34 0.00074 31.1 10.1 97 163-264 2-100 (304)
462 PRK05993 short chain dehydroge 73.7 51 0.0011 29.5 11.1 69 161-237 4-86 (277)
463 PRK08703 short chain dehydroge 73.6 18 0.00039 31.5 7.9 77 160-237 5-97 (239)
464 PRK07791 short chain dehydroge 73.4 23 0.00049 32.1 8.7 77 160-238 5-103 (286)
465 PRK08862 short chain dehydroge 73.3 16 0.00035 31.9 7.5 75 160-236 4-92 (227)
466 TIGR00497 hsdM type I restrict 73.3 28 0.0006 34.6 9.9 106 160-265 217-356 (501)
467 PRK07062 short chain dehydroge 73.1 16 0.00035 32.4 7.6 78 160-237 7-97 (265)
468 PRK07832 short chain dehydroge 73.1 48 0.001 29.5 10.7 74 163-237 2-88 (272)
469 PRK09291 short chain dehydroge 73.0 21 0.00044 31.4 8.2 74 162-237 3-83 (257)
470 PRK06130 3-hydroxybutyryl-CoA 73.0 13 0.00028 34.3 7.0 98 162-264 5-115 (311)
471 PRK07454 short chain dehydroge 72.9 19 0.00042 31.3 8.0 74 161-237 6-93 (241)
472 PLN02545 3-hydroxybutyryl-CoA 72.8 26 0.00055 32.0 9.0 96 162-263 5-118 (295)
473 PF04072 LCM: Leucine carboxyl 72.6 14 0.0003 31.2 6.6 98 136-241 60-171 (183)
474 PRK07035 short chain dehydroge 72.4 18 0.00039 31.7 7.7 75 160-236 7-94 (252)
475 PRK09135 pteridine reductase; 72.3 55 0.0012 28.3 10.8 77 160-237 5-95 (249)
476 PF01558 POR: Pyruvate ferredo 72.2 14 0.00031 30.7 6.6 72 178-266 16-88 (173)
477 PF03686 UPF0146: Uncharacteri 71.9 6.7 0.00014 31.1 4.1 91 160-267 13-105 (127)
478 PLN02178 cinnamyl-alcohol dehy 71.9 24 0.00052 33.5 8.8 93 159-264 177-273 (375)
479 PRK12746 short chain dehydroge 71.7 63 0.0014 28.2 11.1 75 160-237 5-100 (254)
480 PRK07102 short chain dehydroge 71.6 16 0.00035 31.9 7.1 74 162-236 2-85 (243)
481 PRK05866 short chain dehydroge 71.6 18 0.00038 33.0 7.6 76 160-237 39-127 (293)
482 COG0541 Ffh Signal recognition 71.4 1E+02 0.0022 29.9 14.0 155 104-265 42-222 (451)
483 PRK12921 2-dehydropantoate 2-r 71.2 33 0.00071 31.3 9.3 96 163-263 2-101 (305)
484 PRK07478 short chain dehydroge 71.2 21 0.00045 31.4 7.8 76 160-237 5-93 (254)
485 PF11899 DUF3419: Protein of u 70.9 9.4 0.0002 36.5 5.7 46 157-202 32-77 (380)
486 PRK06194 hypothetical protein; 70.9 19 0.00041 32.4 7.6 77 160-238 5-94 (287)
487 KOG3924 Putative protein methy 70.8 21 0.00046 34.0 7.7 106 157-265 189-309 (419)
488 PRK06113 7-alpha-hydroxysteroi 70.7 20 0.00044 31.6 7.6 76 160-237 10-98 (255)
489 cd08278 benzyl_alcohol_DH Benz 70.7 13 0.00029 34.9 6.8 95 157-264 183-285 (365)
490 PRK03659 glutathione-regulated 70.5 28 0.0006 35.5 9.3 91 162-267 401-501 (601)
491 TIGR02818 adh_III_F_hyde S-(hy 70.4 14 0.00031 34.9 6.9 99 157-265 182-288 (368)
492 cd08231 MDR_TM0436_like Hypoth 70.4 50 0.0011 30.8 10.6 95 160-264 177-280 (361)
493 PRK07024 short chain dehydroge 70.3 20 0.00044 31.6 7.5 73 162-237 3-88 (257)
494 PRK06484 short chain dehydroge 70.3 38 0.00083 33.5 10.2 73 160-237 4-89 (520)
495 PF02719 Polysacc_synt_2: Poly 70.1 11 0.00024 34.5 5.8 75 167-241 3-91 (293)
496 TIGR03206 benzo_BadH 2-hydroxy 70.1 23 0.00051 30.8 7.9 76 160-237 2-90 (250)
497 TIGR02437 FadB fatty oxidation 70.1 18 0.0004 37.7 8.0 102 160-267 312-431 (714)
498 COG0287 TyrA Prephenate dehydr 70.0 25 0.00053 32.1 8.0 87 162-261 4-95 (279)
499 PLN02827 Alcohol dehydrogenase 70.0 15 0.00033 34.9 7.0 99 157-265 190-296 (378)
500 PRK08415 enoyl-(acyl carrier p 69.9 61 0.0013 29.1 10.7 75 160-237 4-93 (274)
No 1
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=100.00 E-value=4.6e-38 Score=289.30 Aligned_cols=248 Identities=78% Similarity=1.274 Sum_probs=220.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhhCcCCCCCcccccChhHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHH
Q 019123 98 KHSAPSSLKHAELAKFSAIADTWWDAEGPYKPLHALNPTRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEP 177 (346)
Q Consensus 98 ~~~~~~~~~~~~~~~f~~~a~~y~~~~~~~~~~~~~n~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~ 177 (346)
.....+++++.++++|+.++..||+.++++..++.||+.|..++.+.+.+++........+.++.+|||||||+|.++..
T Consensus 69 ~~~~~~s~~~~e~~~f~~~a~~WW~~~g~~~~lh~~N~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~ 148 (322)
T PLN02396 69 STSTTTSLNEDELAKFSAIADTWWHSEGPFKPLHQMNPTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEP 148 (322)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCCCchHHHHhChHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHH
Confidence 33444688999999999999999999999999999999999999998888775433222345678999999999999999
Q ss_pred HHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhcccCCHHHHHHHHHHhcccC
Q 019123 178 LARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSE 257 (346)
Q Consensus 178 l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~Lkpg 257 (346)
++..|.+|+|+|++++|++.++.+....+...++.++++|+++++.++++||+|++..+|+|+.++..++++++++||||
T Consensus 149 La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPG 228 (322)
T PLN02396 149 LARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPN 228 (322)
T ss_pred HHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCC
Confidence 99989999999999999999998876554445899999999998877789999999999999999999999999999999
Q ss_pred ceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEEeccccCCCCCceeeccCCcee
Q 019123 258 GATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMAGFVYNPLTGRWSLSDDISVN 337 (346)
Q Consensus 258 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~~~~~~~~ 337 (346)
|.+++.+++.....+...+....+...|++.+.+.+..+++++++..+++++||+++++.++.|.|..+.|.++.....+
T Consensus 229 G~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~G~~~~p~~~~w~~~~~~~~n 308 (322)
T PLN02396 229 GATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMAGFVYNPITGRWLLSDDISVN 308 (322)
T ss_pred cEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEeeeEEcCcCCeEEecCCCcee
Confidence 99999999987766666666667788888888888888999999999999999999999999999999999999999999
Q ss_pred EEEEeeeC
Q 019123 338 FIAFGTKN 345 (346)
Q Consensus 338 ~l~~~rk~ 345 (346)
|+..+.|+
T Consensus 309 y~~~~~k~ 316 (322)
T PLN02396 309 YIAYGTKR 316 (322)
T ss_pred ehhheecC
Confidence 99999986
No 2
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=100.00 E-value=3.8e-38 Score=270.30 Aligned_cols=235 Identities=46% Similarity=0.820 Sum_probs=222.3
Q ss_pred CCCCCHHHHHHHHHHHHhhhCcCCCCCcccccChhHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHHHHHc
Q 019123 102 PSSLKHAELAKFSAIADTWWDAEGPYKPLHALNPTRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARM 181 (346)
Q Consensus 102 ~~~~~~~~~~~f~~~a~~y~~~~~~~~~~~~~n~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~ 181 (346)
..+++..++++|+.++..|||+++.|.++|.+|+.|..++.+.++..+. .++.+|||||||.|.++..|+..
T Consensus 9 ~~~id~~e~~~F~~la~~wwd~~g~f~~LH~~N~~rl~~i~~~~~~~~~--------l~g~~vLDvGCGgG~Lse~mAr~ 80 (243)
T COG2227 9 TQNVDYKELDKFEALASRWWDPEGEFKPLHKINPLRLDYIREVARLRFD--------LPGLRVLDVGCGGGILSEPLARL 80 (243)
T ss_pred cccCCHHHHHHHHHHHhhhcCCCCceeeeeeeccchhhhhhhhhhcccC--------CCCCeEEEecCCccHhhHHHHHC
Confidence 5678999999999999999999999999999999999999998876543 57899999999999999999999
Q ss_pred CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhcccCCHHHHHHHHHHhcccCceEE
Q 019123 182 GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATV 261 (346)
Q Consensus 182 ~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~ 261 (346)
|++|+|+|+++.+++.|+.++...++ ++++.+..++++....++||+|+|..+|+|++|+..+++.+.+.+||||.++
T Consensus 81 Ga~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf 158 (243)
T COG2227 81 GASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILF 158 (243)
T ss_pred CCeeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEE
Confidence 99999999999999999999988875 4789999999988766899999999999999999999999999999999999
Q ss_pred EEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEEeccccCCCCCceeeccCCceeEEEE
Q 019123 262 ISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMAGFVYNPLTGRWSLSDDISVNFIAF 341 (346)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~ 341 (346)
++++++....++..+....++.+|+|.+++++..|..++|+..++..+|+.+....++.|.|+.+.|.++...+.+|++.
T Consensus 159 ~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~~y~p~~~~~~l~~~~~vNy~~~ 238 (243)
T COG2227 159 LSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGLTYNPLTNSWKLSNDVSVNYMVH 238 (243)
T ss_pred EeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecceEeccccceEEecCCccceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCC
Q 019123 342 GTKNS 346 (346)
Q Consensus 342 ~rk~~ 346 (346)
++|.+
T Consensus 239 ~~~~~ 243 (243)
T COG2227 239 AQRPA 243 (243)
T ss_pred eecCC
Confidence 99864
No 3
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=100.00 E-value=2.2e-36 Score=258.88 Aligned_cols=222 Identities=15% Similarity=0.201 Sum_probs=187.1
Q ss_pred cCCCCCCCCCCCHHHHHH-----HHHHHHhhhCcCCCCCcccccChhHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECC
Q 019123 95 NNKKHSAPSSLKHAELAK-----FSAIADTWWDAEGPYKPLHALNPTRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGC 169 (346)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~-----f~~~a~~y~~~~~~~~~~~~~n~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~ 169 (346)
...++++.+++.++++.+ |.+++..| |.||+. +++..|++|+...... +.+..+.++||+||
T Consensus 43 ~~~Thfgf~tV~e~eke~~V~~vF~~vA~~Y----------D~mND~-mSlGiHRlWKd~~v~~--L~p~~~m~~lDvaG 109 (296)
T KOG1540|consen 43 SKCTHFGFKTVRESEKERLVHHVFESVAKKY----------DIMNDA-MSLGIHRLWKDMFVSK--LGPGKGMKVLDVAG 109 (296)
T ss_pred cccccccccccchhhhhhHHHHHHHHHHHHH----------HHHHHH-hhcchhHHHHHHhhhc--cCCCCCCeEEEecC
Confidence 347788888998888776 88889998 999988 9999999998654332 46667799999999
Q ss_pred CCchhHHHHHHc--------CCeEEEEcCChHHHHHHHHhhccCCCCC--ceEEEEcCcccccccCCceeEEEecchhcc
Q 019123 170 GGGILSEPLARM--------GATVTGIDAVEKNIKIARLHADLDPETS--TIEYCCTTAEKLVEEQRKFDAVIASEVIEH 239 (346)
Q Consensus 170 G~G~~~~~l~~~--------~~~v~giD~s~~~l~~a~~~~~~~~~~~--~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~ 239 (346)
|||++++.++++ +.+|+++|+|++||..++++....++.. .+.|+++|++++|+++++||.+++.++|++
T Consensus 110 GTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN 189 (296)
T KOG1540|consen 110 GTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRN 189 (296)
T ss_pred CcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceec
Confidence 999999999987 2579999999999999999998877743 499999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCC--------------ccccccCCCHHHHHHH
Q 019123 240 VADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKG--------------THQWSSFLTPEELVLI 305 (346)
Q Consensus 240 ~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l 305 (346)
++++++.|+++||||||||.|.|++++...+..+..+ +..|.+..++.. .+++++|+++++|+.|
T Consensus 190 ~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~f-y~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~m 268 (296)
T KOG1540|consen 190 VTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWF-YDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASM 268 (296)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHH-HHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHH
Confidence 9999999999999999999999999998875544433 233444444421 1246899999999999
Q ss_pred HHHCCCcEEE-EeccccCCCCCceee
Q 019123 306 LQRASIDVKE-MAGFVYNPLTGRWSL 330 (346)
Q Consensus 306 l~~aGF~~v~-~~~~~~~~~~~~~~~ 330 (346)
+++|||..+. +++++++....||++
T Consensus 269 iedaGF~~~~~ye~lt~Gv~aIH~gi 294 (296)
T KOG1540|consen 269 IEDAGFSSVNGYENLTFGVVAIHSGI 294 (296)
T ss_pred HHHcCCccccccccceeeeeeeehhc
Confidence 9999999996 899999988887764
No 4
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=100.00 E-value=5e-35 Score=252.26 Aligned_cols=238 Identities=47% Similarity=0.809 Sum_probs=211.0
Q ss_pred CCCCHHHHHHHHHHHHhhhCcCCCCCcccccChhHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHHHHHcC
Q 019123 103 SSLKHAELAKFSAIADTWWDAEGPYKPLHALNPTRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARMG 182 (346)
Q Consensus 103 ~~~~~~~~~~f~~~a~~y~~~~~~~~~~~~~n~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~ 182 (346)
.+++.+|+++|...+..||+.++.+.+++.||+.|..++++.+.+..........+..+++|||+|||+|.++..|+..|
T Consensus 32 ~si~~~eV~~f~~la~~wwd~~g~~~~Lh~mn~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlg 111 (282)
T KOG1270|consen 32 TSIDVDEVKKFQALAFTWWDEEGVRHPLHSMNQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLG 111 (282)
T ss_pred ecccHHHHHHHHHhcccccccccchhhhhhccchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhC
Confidence 44566899999999999999999999999999999999998888876432212233456889999999999999999999
Q ss_pred CeEEEEcCChHHHHHHHHhhccCCC-CC----ceEEEEcCcccccccCCceeEEEecchhcccCCHHHHHHHHHHhcccC
Q 019123 183 ATVTGIDAVEKNIKIARLHADLDPE-TS----TIEYCCTTAEKLVEEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSE 257 (346)
Q Consensus 183 ~~v~giD~s~~~l~~a~~~~~~~~~-~~----~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~Lkpg 257 (346)
+.|+|+|++++|++.|+++....+. .. +++|.+.+++.+. +.||.|+|..+++|+.|++.+++.+.+.||||
T Consensus 112 a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~ 188 (282)
T KOG1270|consen 112 AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPN 188 (282)
T ss_pred CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHHHHHHHhCHHHHHHHHHHHhCCC
Confidence 9999999999999999999655554 22 4778888887764 34999999999999999999999999999999
Q ss_pred ceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEEeccccCCCCCceeeccCCcee
Q 019123 258 GATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMAGFVYNPLTGRWSLSDDISVN 337 (346)
Q Consensus 258 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~~~~~~~~ 337 (346)
|.+++.++++....++..+....+..++.|.+++.|..|.+++++..+++.+|+.+..+.+..|.|..++|.|.......
T Consensus 189 G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~v~G~~y~p~s~~w~~~~~~~~~ 268 (282)
T KOG1270|consen 189 GRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVNDVVGEVYNPISGQWLWSKNTSLN 268 (282)
T ss_pred CceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhhhhccccccccceeEecccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred EEEEee
Q 019123 338 FIAFGT 343 (346)
Q Consensus 338 ~l~~~r 343 (346)
|.+.+-
T Consensus 269 ~~~~av 274 (282)
T KOG1270|consen 269 YGIKAV 274 (282)
T ss_pred HHHHHH
Confidence 766543
No 5
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=100.00 E-value=8.2e-33 Score=241.84 Aligned_cols=207 Identities=20% Similarity=0.254 Sum_probs=167.0
Q ss_pred HHHHH-HHHHHHhhhCcCCCCCcccccChhHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHHHHHcC--Ce
Q 019123 108 AELAK-FSAIADTWWDAEGPYKPLHALNPTRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARMG--AT 184 (346)
Q Consensus 108 ~~~~~-f~~~a~~y~~~~~~~~~~~~~n~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~ 184 (346)
+.++. |++++..| |.+|+. +++..+..|+...... ....++.+|||||||||+++..+++.. .+
T Consensus 11 ~~v~~vF~~ia~~Y----------D~~n~~-~S~g~~~~Wr~~~i~~--~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~ 77 (238)
T COG2226 11 EKVQKVFDKVAKKY----------DLMNDL-MSFGLHRLWRRALISL--LGIKPGDKVLDVACGTGDMALLLAKSVGTGE 77 (238)
T ss_pred HHHHHHHHhhHHHH----------Hhhccc-ccCcchHHHHHHHHHh--hCCCCCCEEEEecCCccHHHHHHHHhcCCce
Confidence 34444 99999999 999977 8888888887543332 233378999999999999999999985 69
Q ss_pred EEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 185 VTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 185 v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
|+|+|+|+.||+.++++....+... ++|+++|+++||+++++||+|+++++|++++|++.+|+|++|||||||.++|.+
T Consensus 78 v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 78 VVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred EEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEE
Confidence 9999999999999999998876633 999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchHHHHHHHHHHHHHhh-hcCCC-------c-------cccccCCCHHHHHHHHHHCCCcEEEEeccccCCCCCcee
Q 019123 265 INRSMRAYATAIIAAEHILH-WLPKG-------T-------HQWSSFLTPEELVLILQRASIDVKEMAGFVYNPLTGRWS 329 (346)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~-~~~~~-------~-------~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~ 329 (346)
++............. +..+ ++|.. . .++..+++++++..+++++||+.+.+++++++...-|.+
T Consensus 157 ~~~p~~~~~~~~~~~-~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g 235 (238)
T COG2226 157 FSKPDNPVLRKAYIL-YYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRG 235 (238)
T ss_pred cCCCCchhhHHHHHH-HHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEE
Confidence 988665444332221 2222 32211 1 134689999999999999999999888777766554433
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.97 E-value=3.7e-31 Score=233.81 Aligned_cols=207 Identities=23% Similarity=0.274 Sum_probs=94.9
Q ss_pred HHHHH-HHHHHHhhhCcCCCCCcccccChhHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHHHHHc---CC
Q 019123 108 AELAK-FSAIADTWWDAEGPYKPLHALNPTRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARM---GA 183 (346)
Q Consensus 108 ~~~~~-f~~~a~~y~~~~~~~~~~~~~n~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~---~~ 183 (346)
+.+++ |++++..| |.+|.. +++..+..|+...... ....++.+|||+|||||.++..+++. ..
T Consensus 7 ~~v~~~Fd~ia~~Y----------D~~n~~-ls~g~~~~wr~~~~~~--~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~ 73 (233)
T PF01209_consen 7 QYVRKMFDRIAPRY----------DRMNDL-LSFGQDRRWRRKLIKL--LGLRPGDRVLDVACGTGDVTRELARRVGPNG 73 (233)
T ss_dssp -----------------------------------------SHHHHH--HT--S--EEEEET-TTSHHHHHHGGGSS---
T ss_pred HHHHHHHHHHHHHh----------CCCccc-cCCcHHHHHHHHHHhc--cCCCCCCEEEEeCCChHHHHHHHHHHCCCcc
Confidence 34444 99999999 888876 7777666665321110 24567889999999999999999876 34
Q ss_pred eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhcccCCHHHHHHHHHHhcccCceEEEE
Q 019123 184 TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVIS 263 (346)
Q Consensus 184 ~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~ 263 (346)
+|+|+|+|+.|++.++++....+. .+++++++|++++|+++++||+|+|.+++++++|+..+|+|++|+|||||.++|.
T Consensus 74 ~v~~vD~s~~ML~~a~~k~~~~~~-~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 74 KVVGVDISPGMLEVARKKLKREGL-QNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEecCCHHHHHHHHHHHHhhCC-CCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEe
Confidence 899999999999999999987766 4899999999999999999999999999999999999999999999999999999
Q ss_pred ecCcchHHHHHHHHHHHHHhhhcCC-------C--c-----cccccCCCHHHHHHHHHHCCCcEEEEeccccCCCCCcee
Q 019123 264 TINRSMRAYATAIIAAEHILHWLPK-------G--T-----HQWSSFLTPEELVLILQRASIDVKEMAGFVYNPLTGRWS 329 (346)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~-----~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~ 329 (346)
+++........... ..|...++|. . . .++..|++.+++.++++++||+.++++.++++..+.+|+
T Consensus 153 e~~~p~~~~~~~~~-~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g 231 (233)
T PF01209_consen 153 EFSKPRNPLLRALY-KFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVG 231 (233)
T ss_dssp EEEB-SSHHHHHHH-HH---------------------------------------------------------------
T ss_pred eccCCCCchhhcee-eeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99877655444322 2233333331 1 1 145688999999999999999999999888888776654
No 7
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.95 E-value=1e-26 Score=206.95 Aligned_cols=230 Identities=49% Similarity=0.850 Sum_probs=192.8
Q ss_pred CCCCHHHHHHHHHHHHhhhCcCCCCCcccccChhHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHHHHHcC
Q 019123 103 SSLKHAELAKFSAIADTWWDAEGPYKPLHALNPTRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARMG 182 (346)
Q Consensus 103 ~~~~~~~~~~f~~~a~~y~~~~~~~~~~~~~n~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~ 182 (346)
+++.++|++.|+.+++.||+..+.....+.+++.+..++...+ ...++.+|||||||+|.++..++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~~~~~~~vLdiG~G~G~~~~~l~~~~ 70 (233)
T PRK05134 2 SNVDPAEIAKFSALAARWWDPNGEFKPLHRINPLRLNYIREHA-----------GGLFGKRVLDVGCGGGILSESMARLG 70 (233)
T ss_pred CcccHHHHHHHHHHHHHHhccCCCcHHHHHhhHHHHHHHHHhc-----------cCCCCCeEEEeCCCCCHHHHHHHHcC
Confidence 5789999999999999999999888888888888887776554 23467899999999999999999988
Q ss_pred CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-ccCCceeEEEecchhcccCCHHHHHHHHHHhcccCceEE
Q 019123 183 ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-EEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATV 261 (346)
Q Consensus 183 ~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-~~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~ 261 (346)
.+|+++|+++.+++.+++++...+. ++.++..++.+.+ ..++.||+|++..+++|..++..+++.+.++|+|||.++
T Consensus 71 ~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~ 148 (233)
T PRK05134 71 ADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVF 148 (233)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEE
Confidence 8999999999999999988765543 5788888887765 245789999999999999999999999999999999999
Q ss_pred EEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEEeccccCCCCCceeeccCCceeEEEE
Q 019123 262 ISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMAGFVYNPLTGRWSLSDDISVNFIAF 341 (346)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~ 341 (346)
+..+...............+...+.+.....+..+++++++.++++++||+++...++.++|+.+.|........+|-..
T Consensus 149 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (233)
T PRK05134 149 FSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDITGLHYNPLTNRWKLSDDVDVNYMLA 228 (233)
T ss_pred EEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeeeeEEechhhcceeeccCccchhhhh
Confidence 98876544333323333334455555555556778999999999999999999999999999999999999999999999
Q ss_pred eeeC
Q 019123 342 GTKN 345 (346)
Q Consensus 342 ~rk~ 345 (346)
+||.
T Consensus 229 ~~~~ 232 (233)
T PRK05134 229 ARKP 232 (233)
T ss_pred eecC
Confidence 9885
No 8
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.94 E-value=1e-25 Score=203.34 Aligned_cols=208 Identities=19% Similarity=0.231 Sum_probs=146.8
Q ss_pred CHHHHHHHHHHHHhhhCcCCCCCcccccChhHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHHHHHc-C--
Q 019123 106 KHAELAKFSAIADTWWDAEGPYKPLHALNPTRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARM-G-- 182 (346)
Q Consensus 106 ~~~~~~~f~~~a~~y~~~~~~~~~~~~~n~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~-- 182 (346)
.....+.|+.++..| |.++.. +.+..+..|+..... .....++.+|||||||+|.++..+++. +
T Consensus 32 ~~~v~~~f~~~A~~Y----------D~~~~~-~s~g~~~~~r~~~~~--~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~ 98 (261)
T PLN02233 32 ANERQALFNRIAPVY----------DNLNDL-LSLGQHRIWKRMAVS--WSGAKMGDRVLDLCCGSGDLAFLLSEKVGSD 98 (261)
T ss_pred HHHHHHHHHHhhhHH----------HHhhhh-hcCChhHHHHHHHHH--HhCCCCCCEEEEECCcCCHHHHHHHHHhCCC
Confidence 344445599999999 655543 222222222221100 023456789999999999999998876 3
Q ss_pred CeEEEEcCChHHHHHHHHhhcc--CCCCCceEEEEcCcccccccCCceeEEEecchhcccCCHHHHHHHHHHhcccCceE
Q 019123 183 ATVTGIDAVEKNIKIARLHADL--DPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGAT 260 (346)
Q Consensus 183 ~~v~giD~s~~~l~~a~~~~~~--~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~ 260 (346)
.+|+|+|+|++|++.++++... .....++.++++|++++|+++++||+|++.++++|++++..++++++|+|||||.|
T Consensus 99 ~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l 178 (261)
T PLN02233 99 GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRV 178 (261)
T ss_pred CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEE
Confidence 4899999999999999877531 11225799999999999998999999999999999999999999999999999999
Q ss_pred EEEecCcchHHHHHHHHHH--H----HHhhhcCC-Cc-----cccccCCCHHHHHHHHHHCCCcEEEEeccccCCCCC
Q 019123 261 VISTINRSMRAYATAIIAA--E----HILHWLPK-GT-----HQWSSFLTPEELVLILQRASIDVKEMAGFVYNPLTG 326 (346)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~-~~-----~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~ 326 (346)
++.++......+...+... . ........ .. ..+..+++++++.++++++||+++....+.+....-
T Consensus 179 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~ 256 (261)
T PLN02233 179 SILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEISGGLMGN 256 (261)
T ss_pred EEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEE
Confidence 9999876544332222110 0 00000000 00 123568999999999999999999877665544433
No 9
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.94 E-value=4.4e-25 Score=195.24 Aligned_cols=221 Identities=51% Similarity=0.946 Sum_probs=183.2
Q ss_pred HHHHHHHHhhhCcCCCCCcccccChhHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHHHHHcCCeEEEEcC
Q 019123 111 AKFSAIADTWWDAEGPYKPLHALNPTRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARMGATVTGIDA 190 (346)
Q Consensus 111 ~~f~~~a~~y~~~~~~~~~~~~~n~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~ 190 (346)
..|..++..||++++.+.....+++.+.+++.+.+... . ....+.+|||+|||+|.++..++..+.+|+++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~------~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~ 75 (224)
T TIGR01983 3 AKFSALAHEWWDPNGKFKPLHKMNPLRLDYIRDTIRKN-K------KPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDA 75 (224)
T ss_pred cHHHHHHHHhcCCCCcHHHHHHhhHHHHHHHHHHHHhc-c------cCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeC
Confidence 34888999999999999999999999888888877543 1 1235789999999999999999988889999999
Q ss_pred ChHHHHHHHHhhccCCCCCceEEEEcCccccccc-CCceeEEEecchhcccCCHHHHHHHHHHhcccCceEEEEecCcch
Q 019123 191 VEKNIKIARLHADLDPETSTIEYCCTTAEKLVEE-QRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTINRSM 269 (346)
Q Consensus 191 s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~ 269 (346)
++.+++.+++++...+. .++.+...|+.+++.. .++||+|++..+++++.++..+++++.++|+|||.+++..++...
T Consensus 76 s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 154 (224)
T TIGR01983 76 SEENIEVAKLHAKKDPL-LKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTP 154 (224)
T ss_pred CHHHHHHHHHHHHHcCC-CceEEEeCCHHHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCc
Confidence 99999999988776553 2688999998877643 478999999999999999999999999999999999998877654
Q ss_pred HHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEEeccccCCCCCceeeccCCceeEE
Q 019123 270 RAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMAGFVYNPLTGRWSLSDDISVNFI 339 (346)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~~~~~~~~~l 339 (346)
...........+...+.+.....+..+++.+++.++++++||+++++.++.+.|+.+.|.++++...+|+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (224)
T TIGR01983 155 KSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVKGLVYNPIKNEWTLSKDTDVNYM 224 (224)
T ss_pred hHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeeeeEEeehhhcccccccCCccccC
Confidence 4443333334455555555555556788999999999999999999999999999999999998888774
No 10
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.90 E-value=5e-22 Score=179.11 Aligned_cols=199 Identities=21% Similarity=0.260 Sum_probs=141.4
Q ss_pred HHHHHHHhhhCcCCCCCcccccChhHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHHHHHcCCeEEEEcCC
Q 019123 112 KFSAIADTWWDAEGPYKPLHALNPTRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARMGATVTGIDAV 191 (346)
Q Consensus 112 ~f~~~a~~y~~~~~~~~~~~~~n~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s 191 (346)
.|+.++..|-+.- +. ..-...|...+...+...+.. .+ .++.+|||+|||+|.++..++..+.+|+++|+|
T Consensus 5 ~fd~~a~~f~~~~--y~--~~~g~~r~~~~~~~~~~~l~~----l~-~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s 75 (255)
T PRK11036 5 NFDDIAEKFSRNI--YG--TTKGQIRQAILWQDLDRLLAE----LP-PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLS 75 (255)
T ss_pred ChhhHHHHHHHhc--cC--CCccHHHHHHHHHHHHHHHHh----cC-CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECC
Confidence 3666776663211 11 111234445444444443322 12 356799999999999999999999999999999
Q ss_pred hHHHHHHHHhhccCCCCCceEEEEcCccccc-ccCCceeEEEecchhcccCCHHHHHHHHHHhcccCceEEEEecCcchH
Q 019123 192 EKNIKIARLHADLDPETSTIEYCCTTAEKLV-EEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTINRSMR 270 (346)
Q Consensus 192 ~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-~~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~ 270 (346)
++|++.++++....++..++.++++|+.+++ .++++||+|++..+++|+.++..++++++++|||||.+++..++....
T Consensus 76 ~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~ 155 (255)
T PRK11036 76 AEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGL 155 (255)
T ss_pred HHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHH
Confidence 9999999999888777678999999998875 457899999999999999999999999999999999999998876532
Q ss_pred HHHHHHHH-HHHHhhhcCCC---ccccccCCCHHHHHHHHHHCCCcEEEEecc
Q 019123 271 AYATAIIA-AEHILHWLPKG---THQWSSFLTPEELVLILQRASIDVKEMAGF 319 (346)
Q Consensus 271 ~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~ 319 (346)
.+...+.. .......+... .......++++++.++++++||+++.+.++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~~~~~~gi 208 (255)
T PRK11036 156 LMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQIMGKTGV 208 (255)
T ss_pred HHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCeEeeeeeE
Confidence 21111110 00111111110 011123578999999999999999977665
No 11
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.89 E-value=1.1e-21 Score=174.36 Aligned_cols=168 Identities=18% Similarity=0.166 Sum_probs=129.2
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHc---CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEe
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARM---GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIA 233 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~ 233 (346)
...++.+|||+|||+|.++..+++. +.+|+|+|+++.|++.++++....++ .++.++++|++++++++++||+|++
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~ 120 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFDDNSFDYVTI 120 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCCCCCCccEEEE
Confidence 4456789999999999999999876 35899999999999999998876665 6799999999988877889999999
Q ss_pred cchhcccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHH--H----HHhhhcCC-------CccccccCCCHH
Q 019123 234 SEVIEHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAA--E----HILHWLPK-------GTHQWSSFLTPE 300 (346)
Q Consensus 234 ~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~-------~~~~~~~~~~~~ 300 (346)
.+++++++++..+++++.++|||||.+++.+............... . .....+.. .......+++.+
T Consensus 121 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (231)
T TIGR02752 121 GFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMD 200 (231)
T ss_pred ecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999999987654332222111100 0 00000000 011235688999
Q ss_pred HHHHHHHHCCCcEEEEeccccCCCC
Q 019123 301 ELVLILQRASIDVKEMAGFVYNPLT 325 (346)
Q Consensus 301 ~~~~ll~~aGF~~v~~~~~~~~~~~ 325 (346)
++.++++++||+++++..+.+++.+
T Consensus 201 ~l~~~l~~aGf~~~~~~~~~~g~~~ 225 (231)
T TIGR02752 201 ELAEMFQEAGFKDVEVKSYTGGVAA 225 (231)
T ss_pred HHHHHHHHcCCCeeEEEEcccceEE
Confidence 9999999999999988877665543
No 12
>PLN02244 tocopherol O-methyltransferase
Probab=99.89 E-value=1e-21 Score=183.79 Aligned_cols=160 Identities=22% Similarity=0.233 Sum_probs=125.1
Q ss_pred CCCCeEEEECCCCchhHHHHHHc-CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchh
Q 019123 159 FEGLNIVDVGCGGGILSEPLARM-GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVI 237 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l 237 (346)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.++++....++..++.|+++|+.++++++++||+|++..++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 46789999999999999999986 78999999999999999998887777678999999999999889999999999999
Q ss_pred cccCCHHHHHHHHHHhcccCceEEEEecCcchHHHH-HHH--HHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEE
Q 019123 238 EHVADPAEFCKSLSALTVSEGATVISTINRSMRAYA-TAI--IAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVK 314 (346)
Q Consensus 238 ~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v 314 (346)
+|+++...++++++++|||||.|++.++........ ..+ .....+..... .+....+.+.+++..+++++||+++
T Consensus 197 ~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~--~~~~p~~~s~~~~~~~l~~aGf~~v 274 (340)
T PLN02244 197 EHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICA--AYYLPAWCSTSDYVKLAESLGLQDI 274 (340)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHh--hccCCCCCCHHHHHHHHHHCCCCee
Confidence 999999999999999999999999987643110000 000 00000101000 0111235689999999999999999
Q ss_pred EEeccc
Q 019123 315 EMAGFV 320 (346)
Q Consensus 315 ~~~~~~ 320 (346)
.+..+.
T Consensus 275 ~~~d~s 280 (340)
T PLN02244 275 KTEDWS 280 (340)
T ss_pred EeeeCc
Confidence 887654
No 13
>PRK05785 hypothetical protein; Provisional
Probab=99.88 E-value=2.9e-22 Score=176.93 Aligned_cols=156 Identities=13% Similarity=0.102 Sum_probs=116.2
Q ss_pred CCCeEEEECCCCchhHHHHHHc-CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhc
Q 019123 160 EGLNIVDVGCGGGILSEPLARM-GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIE 238 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~ 238 (346)
++.+|||||||||.++..+++. +.+|+|+|+|++|++.++++. .++++|++++|+++++||+|++.++++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~lp~~d~sfD~v~~~~~l~ 121 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD---------DKVVGSFEALPFRDKSFDVVMSSFALH 121 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc---------ceEEechhhCCCCCCCEEEEEecChhh
Confidence 4679999999999999999988 579999999999999998642 357899999999999999999999999
Q ss_pred ccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHH-------hhhcCCCc-------cccccCCCHHHHHH
Q 019123 239 HVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHI-------LHWLPKGT-------HQWSSFLTPEELVL 304 (346)
Q Consensus 239 ~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-------~~~~~~~~~~~~~~ 304 (346)
|++|++.++++++|+|||. +.+.++........... ...|. ..++.... .++..|++++++.+
T Consensus 122 ~~~d~~~~l~e~~RvLkp~--~~ile~~~p~~~~~~~~-~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~ 198 (226)
T PRK05785 122 ASDNIEKVIAEFTRVSRKQ--VGFIAMGKPDNVIKRKY-LSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHRE 198 (226)
T ss_pred ccCCHHHHHHHHHHHhcCc--eEEEEeCCCCcHHHHHH-HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999994 33344433222221111 11111 11111111 13568999999999
Q ss_pred HHHHCCCcEEEEeccccCCCCCce
Q 019123 305 ILQRASIDVKEMAGFVYNPLTGRW 328 (346)
Q Consensus 305 ll~~aGF~~v~~~~~~~~~~~~~~ 328 (346)
+++++| ..+.++.++++...-++
T Consensus 199 ~~~~~~-~~~~~~~~~~G~~~~~~ 221 (226)
T PRK05785 199 IFEKYA-DIKVYEERGLGLVYFVV 221 (226)
T ss_pred HHHHHh-CceEEEEccccEEEEEE
Confidence 999984 66888877776655443
No 14
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.85 E-value=6.6e-20 Score=165.00 Aligned_cols=142 Identities=18% Similarity=0.220 Sum_probs=115.9
Q ss_pred CCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhc
Q 019123 159 FEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIE 238 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~ 238 (346)
.++.+|||+|||+|.++..++..+.+|+++|+|+.|++.++++.. .+.++++|++.+++++++||+|+++.+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~~~fD~V~s~~~l~ 114 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLATATFDLAWSNLAVQ 114 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCCCcEEEEEECchhh
Confidence 356799999999999999999889999999999999999988753 34688999999988888999999999999
Q ss_pred ccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcE
Q 019123 239 HVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDV 313 (346)
Q Consensus 239 ~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~ 313 (346)
++.++..++.+++++|||||.|++..+.............. . ........+++.+++..++...|+..
T Consensus 115 ~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~------~-~~~~~~~~~~~~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 115 WCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQA------V-DERPHANRFLPPDAIEQALNGWRYQH 182 (251)
T ss_pred hcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHH------h-ccCCccccCCCHHHHHHHHHhCCcee
Confidence 99999999999999999999999998876543322211110 1 11122356889999999999999874
No 15
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.85 E-value=4.5e-20 Score=166.43 Aligned_cols=151 Identities=17% Similarity=0.186 Sum_probs=112.7
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEec
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIAS 234 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~ 234 (346)
...++.+|||||||+|.++..++.. +.+|+|+|+|+.|++.++++ ++.++++|+++++ ++++||+|++.
T Consensus 26 ~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-~~~~fD~v~~~ 96 (255)
T PRK14103 26 GAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK-PKPDTDVVVSN 96 (255)
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC-CCCCceEEEEe
Confidence 4456789999999999999999987 67999999999999999763 4789999998874 56799999999
Q ss_pred chhcccCCHHHHHHHHHHhcccCceEEEEecCcchHHH---HHHHHH-HHHHhhhcCCC-ccccccCCCHHHHHHHHHHC
Q 019123 235 EVIEHVADPAEFCKSLSALTVSEGATVISTINRSMRAY---ATAIIA-AEHILHWLPKG-THQWSSFLTPEELVLILQRA 309 (346)
Q Consensus 235 ~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~a 309 (346)
.+++|++++..++++++++|||||.+++..+....... ...... ..|... .... ......+.+.+++.++|+++
T Consensus 97 ~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~l~~a 175 (255)
T PRK14103 97 AALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKL-LRDIPFRVGAVVQTPAGYAELLTDA 175 (255)
T ss_pred hhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHH-hcccccccCcCCCCHHHHHHHHHhC
Confidence 99999999999999999999999999998654321111 111110 011110 1110 01113467899999999999
Q ss_pred CCcEEEEe
Q 019123 310 SIDVKEMA 317 (346)
Q Consensus 310 GF~~v~~~ 317 (346)
||++..+.
T Consensus 176 Gf~v~~~~ 183 (255)
T PRK14103 176 GCKVDAWE 183 (255)
T ss_pred CCeEEEEe
Confidence 99865433
No 16
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.85 E-value=1.4e-20 Score=157.26 Aligned_cols=140 Identities=31% Similarity=0.502 Sum_probs=109.4
Q ss_pred CCCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchh
Q 019123 158 PFEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVI 237 (346)
Q Consensus 158 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l 237 (346)
..++.+|||||||+|.++..++..+.+|+|+|+++.+++. .++.....+....+.++++||+|+|..+|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGSFDLIICNDVL 88 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSSEEEEEEESSG
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccchhhHhhHHHH
Confidence 3577899999999999999999999999999999999988 12333443444555578899999999999
Q ss_pred cccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCc-cccccCCCHHHHHHHHHHCCCcEEE
Q 019123 238 EHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGT-HQWSSFLTPEELVLILQRASIDVKE 315 (346)
Q Consensus 238 ~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~aGF~~v~ 315 (346)
+|++++..+|++++++|||||++++.+++..... .. ....|..... ..+..+++.+++..+++++||++++
T Consensus 89 ~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 89 EHLPDPEEFLKELSRLLKPGGYLVISDPNRDDPS-PR------SFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp GGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHH-HH------HHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred hhcccHHHHHHHHHHhcCCCCEEEEEEcCCcchh-hh------HHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999999764210 00 1111111111 1345789999999999999999975
No 17
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.85 E-value=5.1e-20 Score=170.74 Aligned_cols=205 Identities=19% Similarity=0.237 Sum_probs=137.4
Q ss_pred CCCCCHHHHHHHHHHHHhhhC-cCCCCCcc--cccChhHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHHH
Q 019123 102 PSSLKHAELAKFSAIADTWWD-AEGPYKPL--HALNPTRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPL 178 (346)
Q Consensus 102 ~~~~~~~~~~~f~~~a~~y~~-~~~~~~~~--~~~n~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l 178 (346)
..++..++.+........+.. ..+++... .....++..+..+.+..++ .+..+.+|||||||+|.++..+
T Consensus 68 ~~~~~~~~~~~l~~~l~~~~pwrkg~~~~~~~~~~~ew~s~~k~~~l~~~l-------~~l~g~~VLDIGCG~G~~~~~l 140 (322)
T PRK15068 68 EEPLSEGQRKRIENLLRALMPWRKGPFSLFGIHIDTEWRSDWKWDRVLPHL-------SPLKGRTVLDVGCGNGYHMWRM 140 (322)
T ss_pred CCCCCHHHHHHHHHHHHhhcCcccCCccccCeeecceehHHhHHHHHHHhh-------CCCCCCEEEEeccCCcHHHHHH
Confidence 345555666554444333311 22333322 2223345555555555443 3456789999999999999999
Q ss_pred HHcCC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhcccCCHHHHHHHHHHhcccC
Q 019123 179 ARMGA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSE 257 (346)
Q Consensus 179 ~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~Lkpg 257 (346)
+..|. .|+|+|+|+.|+..++......+...++.|+.+|+++++. +++||+|+|..+++|..++..+|++++++||||
T Consensus 141 a~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpG 219 (322)
T PRK15068 141 LGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPG 219 (322)
T ss_pred HHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCC
Confidence 99876 6999999999997654432222212579999999999987 788999999999999999999999999999999
Q ss_pred ceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEEeccc
Q 019123 258 GATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMAGFV 320 (346)
Q Consensus 258 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~ 320 (346)
|.|++.++...............+. . ......+++.+++..+++++||+++++....
T Consensus 220 G~lvl~~~~i~~~~~~~l~p~~~y~-~-----~~~~~~lps~~~l~~~L~~aGF~~i~~~~~~ 276 (322)
T PRK15068 220 GELVLETLVIDGDENTVLVPGDRYA-K-----MRNVYFIPSVPALKNWLERAGFKDVRIVDVS 276 (322)
T ss_pred cEEEEEEEEecCCCccccCchhHHh-c-----CccceeCCCHHHHHHHHHHcCCceEEEEeCC
Confidence 9999876432111000000000010 0 0111235689999999999999999876543
No 18
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.85 E-value=1.5e-19 Score=165.89 Aligned_cols=208 Identities=19% Similarity=0.203 Sum_probs=138.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhh-CcCCCCCccccc--ChhHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchh
Q 019123 98 KHSAPSSLKHAELAKFSAIADTWW-DAEGPYKPLHAL--NPTRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGIL 174 (346)
Q Consensus 98 ~~~~~~~~~~~~~~~f~~~a~~y~-~~~~~~~~~~~~--n~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~ 174 (346)
+.....+..+.+.+.....-.... -.++++...... ..++.++.+..+..++ ...++.+|||||||+|.+
T Consensus 63 ~~~~~~~~~~~~~~~l~~~l~~l~p~~~~~~~l~~~~~~~e~~s~~~~~~~l~~l-------~~~~g~~VLDvGCG~G~~ 135 (314)
T TIGR00452 63 CNDKSNPLSAGQIKRILEEIMALMPWRKGPFELSGIKIDSEWRSDIKWDRVLPHL-------SPLKGRTILDVGCGSGYH 135 (314)
T ss_pred ccCCCCCCCHHHHHHHHHHHHhcCCCCCCCcccccccCCHHHHHHHHHHHHHHhc-------CCCCCCEEEEeccCCcHH
Confidence 344456667777777544444331 123444433222 2345555555554442 445778999999999999
Q ss_pred HHHHHHcCC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhcccCCHHHHHHHHHHh
Q 019123 175 SEPLARMGA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEHVADPAEFCKSLSAL 253 (346)
Q Consensus 175 ~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~ 253 (346)
+..++..|. .|+|+|+|+.|+..++..........++.+..+++++++. ..+||+|+|..+++|+.++..+|++++++
T Consensus 136 ~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL~H~~dp~~~L~el~r~ 214 (314)
T TIGR00452 136 MWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGVLYHRKSPLEHLKQLKHQ 214 (314)
T ss_pred HHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcchhhccCCHHHHHHHHHHh
Confidence 999998876 6999999999997654322111112568888999988875 35899999999999999999999999999
Q ss_pred cccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEEecc
Q 019123 254 TVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMAGF 319 (346)
Q Consensus 254 LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~ 319 (346)
|||||.|++.++....... ..........++ .....+++.+++..+++++||+.+++...
T Consensus 215 LkpGG~Lvletl~i~g~~~-~~l~p~~ry~k~-----~nv~flpS~~~L~~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 215 LVIKGELVLETLVIDGDLN-TVLVPKDRYAKM-----KNVYFIPSVSALKNWLEKVGFENFRILDV 274 (314)
T ss_pred cCCCCEEEEEEEEecCccc-cccCchHHHHhc-----cccccCCCHHHHHHHHHHCCCeEEEEEec
Confidence 9999999997653211000 000000000000 01123578999999999999999987654
No 19
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.84 E-value=5.3e-20 Score=166.35 Aligned_cols=151 Identities=19% Similarity=0.234 Sum_probs=120.0
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHc-CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecc
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARM-GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASE 235 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~ 235 (346)
...++.+|||||||+|..+..++.. +.+|+|+|+++.|++.++++... ..++.|.++|+.+.++++++||+|++..
T Consensus 49 ~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~FD~V~s~~ 125 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENTFDMIYSRD 125 (263)
T ss_pred CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCCeEEEEEhh
Confidence 4567889999999999999998764 67999999999999999988754 2579999999998888889999999999
Q ss_pred hhcccC--CHHHHHHHHHHhcccCceEEEEecCcchHH-HHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCc
Q 019123 236 VIEHVA--DPAEFCKSLSALTVSEGATVISTINRSMRA-YATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASID 312 (346)
Q Consensus 236 ~l~~~~--~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~ 312 (346)
++.|++ ++..++++++++|||||.|++.++...... +.... ..+.. .. ...+.+.+++.++|+++||+
T Consensus 126 ~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~--~~~~~----~~---~~~~~~~~~~~~~l~~aGF~ 196 (263)
T PTZ00098 126 AILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEF--KAYIK----KR---KYTLIPIQEYGDLIKSCNFQ 196 (263)
T ss_pred hHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHH--HHHHH----hc---CCCCCCHHHHHHHHHHCCCC
Confidence 998986 788999999999999999999987543211 11110 00110 00 12467899999999999999
Q ss_pred EEEEecc
Q 019123 313 VKEMAGF 319 (346)
Q Consensus 313 ~v~~~~~ 319 (346)
++.+..+
T Consensus 197 ~v~~~d~ 203 (263)
T PTZ00098 197 NVVAKDI 203 (263)
T ss_pred eeeEEeC
Confidence 9987654
No 20
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.84 E-value=4e-20 Score=167.09 Aligned_cols=158 Identities=24% Similarity=0.334 Sum_probs=116.4
Q ss_pred CCCCCCCeEEEECCCCchhHHHHHHc-CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEec
Q 019123 156 ARPFEGLNIVDVGCGGGILSEPLARM-GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIAS 234 (346)
Q Consensus 156 ~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~ 234 (346)
+...++.+|||||||.|.++..++++ |++|+|+++|++..+.+++++...++..++.+...|..+++. +||.|++.
T Consensus 58 ~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi 134 (273)
T PF02353_consen 58 LGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSI 134 (273)
T ss_dssp TT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEE
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEE
Confidence 46789999999999999999999998 999999999999999999999999998899999999887753 89999999
Q ss_pred chhccc--CCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHH-HHHHHhhhcCCCccccccCCCHHHHHHHHHHCCC
Q 019123 235 EVIEHV--ADPAEFCKSLSALTVSEGATVISTINRSMRAYATAII-AAEHILHWLPKGTHQWSSFLTPEELVLILQRASI 311 (346)
Q Consensus 235 ~~l~~~--~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF 311 (346)
.+++|+ .+.+.+++.+.++|||||.+++..+............ ...++.+.+..+. .+++..++...++++||
T Consensus 135 ~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg----~lps~~~~~~~~~~~~l 210 (273)
T PF02353_consen 135 EMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGG----YLPSLSEILRAAEDAGL 210 (273)
T ss_dssp SEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS-------BHHHHHHHHHHTT-
T ss_pred echhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCC----CCCCHHHHHHHHhcCCE
Confidence 999999 4678999999999999999999887665433222000 0134445443333 36788999999999999
Q ss_pred cEEEEeccc
Q 019123 312 DVKEMAGFV 320 (346)
Q Consensus 312 ~~v~~~~~~ 320 (346)
++..+.++.
T Consensus 211 ~v~~~~~~~ 219 (273)
T PF02353_consen 211 EVEDVENLG 219 (273)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEEEcC
Confidence 999887664
No 21
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=2.3e-19 Score=159.96 Aligned_cols=155 Identities=21% Similarity=0.314 Sum_probs=131.5
Q ss_pred CCCCCCCeEEEECCCCchhHHHHHHc-CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEec
Q 019123 156 ARPFEGLNIVDVGCGGGILSEPLARM-GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIAS 234 (346)
Q Consensus 156 ~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~ 234 (346)
+.+.++++|||||||.|.++++++++ +.+|+|+++|+++.+.+++++...++..++++...|..++.. .||-|++.
T Consensus 68 l~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e---~fDrIvSv 144 (283)
T COG2230 68 LGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEE---PFDRIVSV 144 (283)
T ss_pred cCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccc---ccceeeeh
Confidence 47789999999999999999999998 789999999999999999999999998899999999988753 39999999
Q ss_pred chhcccCC--HHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCc
Q 019123 235 EVIEHVAD--PAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASID 312 (346)
Q Consensus 235 ~~l~~~~~--~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~ 312 (346)
.+++|+.. .+.+++.++++|+|||.+++..+........ ....|+.+++..+.. +++..++....+++||.
T Consensus 145 gmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~---~~~~~i~~yiFPgG~----lPs~~~i~~~~~~~~~~ 217 (283)
T COG2230 145 GMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR---RFPDFIDKYIFPGGE----LPSISEILELASEAGFV 217 (283)
T ss_pred hhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc---cchHHHHHhCCCCCc----CCCHHHHHHHHHhcCcE
Confidence 99999986 8899999999999999999988865543321 223455555544443 78899999999999999
Q ss_pred EEEEeccc
Q 019123 313 VKEMAGFV 320 (346)
Q Consensus 313 ~v~~~~~~ 320 (346)
+..++.+.
T Consensus 218 v~~~~~~~ 225 (283)
T COG2230 218 VLDVESLR 225 (283)
T ss_pred EehHhhhc
Confidence 98876553
No 22
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.81 E-value=1.4e-19 Score=137.42 Aligned_cols=94 Identities=32% Similarity=0.531 Sum_probs=84.6
Q ss_pred EEECCCCchhHHHHHHc-CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhcccCCH
Q 019123 165 VDVGCGGGILSEPLARM-GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEHVADP 243 (346)
Q Consensus 165 LDiG~G~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~~~~~ 243 (346)
||+|||+|..+..++++ +.+|+++|+++++++.++++.... ++.+..+|++++++++++||+|++..+++|++++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCccccccccccccccceeeccCH
Confidence 89999999999999999 889999999999999999988653 4669999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCceEEE
Q 019123 244 AEFCKSLSALTVSEGATVI 262 (346)
Q Consensus 244 ~~~l~~~~r~LkpgG~~~~ 262 (346)
..++++++|+|||||.++|
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999986
No 23
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.81 E-value=1.2e-18 Score=155.24 Aligned_cols=163 Identities=21% Similarity=0.243 Sum_probs=124.0
Q ss_pred CCCCeEEEECCCCchhHHHHHHcC---CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecc
Q 019123 159 FEGLNIVDVGCGGGILSEPLARMG---ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASE 235 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~~---~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~ 235 (346)
.++.+|||+|||+|.++..++..+ .+|+++|+++.+++.+++++...+...++.++.+|+.+++.++++||+|++.+
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF 129 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec
Confidence 356899999999999999998875 69999999999999999988765555679999999988877678999999999
Q ss_pred hhcccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHH---HHHH---HHhhhcCCCc-------cccccCCCHHHH
Q 019123 236 VIEHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAI---IAAE---HILHWLPKGT-------HQWSSFLTPEEL 302 (346)
Q Consensus 236 ~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~-------~~~~~~~~~~~~ 302 (346)
+++++.++..+++.+.++|+|||.+++.++........... .... ....+..... ..+..+++.+++
T Consensus 130 ~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (239)
T PRK00216 130 GLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEEL 209 (239)
T ss_pred ccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999887654322211110 0000 0001111100 112457899999
Q ss_pred HHHHHHCCCcEEEEecccc
Q 019123 303 VLILQRASIDVKEMAGFVY 321 (346)
Q Consensus 303 ~~ll~~aGF~~v~~~~~~~ 321 (346)
.++++++||+++.+..+..
T Consensus 210 ~~~l~~aGf~~~~~~~~~~ 228 (239)
T PRK00216 210 AAMLEEAGFERVRYRNLTG 228 (239)
T ss_pred HHHHHhCCCceeeeeeeec
Confidence 9999999999988765443
No 24
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.81 E-value=7.3e-19 Score=172.38 Aligned_cols=151 Identities=23% Similarity=0.247 Sum_probs=119.8
Q ss_pred CCCCCeEEEECCCCchhHHHHHHc-CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecch
Q 019123 158 PFEGLNIVDVGCGGGILSEPLARM-GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEV 236 (346)
Q Consensus 158 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~ 236 (346)
..++.+|||||||+|.++..++.. +.+|+|+|+|+.|++.++++.... ..++.|.++|+..+++++++||+|++..+
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~--~~~v~~~~~d~~~~~~~~~~fD~I~s~~~ 341 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR--KCSVEFEVADCTKKTYPDNSFDVIYSRDT 341 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC--CCceEEEEcCcccCCCCCCCEEEEEECCc
Confidence 346789999999999999998875 679999999999999998876533 25799999999988877889999999999
Q ss_pred hcccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEE
Q 019123 237 IEHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEM 316 (346)
Q Consensus 237 l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (346)
++|++++..++++++++|||||.|++.++........... ..+... .+ ..+++..++.++++++||+++.+
T Consensus 342 l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~--~~~~~~---~g----~~~~~~~~~~~~l~~aGF~~i~~ 412 (475)
T PLN02336 342 ILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEF--AEYIKQ---RG----YDLHDVQAYGQMLKDAGFDDVIA 412 (475)
T ss_pred ccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHH--HHHHHh---cC----CCCCCHHHHHHHHHHCCCeeeee
Confidence 9999999999999999999999999998754321100000 011111 11 24678899999999999999977
Q ss_pred ecc
Q 019123 317 AGF 319 (346)
Q Consensus 317 ~~~ 319 (346)
..+
T Consensus 413 ~d~ 415 (475)
T PLN02336 413 EDR 415 (475)
T ss_pred ecc
Confidence 553
No 25
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.80 E-value=2.4e-18 Score=159.20 Aligned_cols=143 Identities=19% Similarity=0.215 Sum_probs=115.3
Q ss_pred CCCeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchh
Q 019123 160 EGLNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVI 237 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l 237 (346)
++.+|||||||+|.++..+++. +.+|+++|+++.|++.++++... .++.++.+|++++++++++||+|++..++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~L 188 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCCceeEEEEcChh
Confidence 5679999999999999988775 46899999999999999987542 46889999999998888899999999999
Q ss_pred cccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEEe
Q 019123 238 EHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMA 317 (346)
Q Consensus 238 ~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (346)
++++++..++++++++|||||.+++.++....... . +... ..+..+++.+++.++++++||+.+++.
T Consensus 189 ~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~-~---------r~~~---~~~~~~~t~eEl~~lL~~aGF~~V~i~ 255 (340)
T PLN02490 189 EYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWL-S---------RFFA---DVWMLFPKEEEYIEWFTKAGFKDVKLK 255 (340)
T ss_pred hhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhH-H---------HHhh---hhhccCCCHHHHHHHHHHCCCeEEEEE
Confidence 99999999999999999999999887653221110 0 0000 011235688999999999999999876
Q ss_pred cc
Q 019123 318 GF 319 (346)
Q Consensus 318 ~~ 319 (346)
.+
T Consensus 256 ~i 257 (340)
T PLN02490 256 RI 257 (340)
T ss_pred Ec
Confidence 54
No 26
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.80 E-value=6.8e-19 Score=146.23 Aligned_cols=105 Identities=34% Similarity=0.508 Sum_probs=95.6
Q ss_pred CCCeEEEECCCCchhHHHHHH-c--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc--ccCCceeEEEec
Q 019123 160 EGLNIVDVGCGGGILSEPLAR-M--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV--EEQRKFDAVIAS 234 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~-~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~fDlv~~~ 234 (346)
.+.+|||+|||+|.++..+++ . +.+|+|+|+|++|++.+++++...++. +++|.++|+.+++ ++ +.||+|++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccC-CCeeEEEEc
Confidence 568999999999999999994 3 569999999999999999998888874 8999999999976 44 789999999
Q ss_pred chhcccCCHHHHHHHHHHhcccCceEEEEecC
Q 019123 235 EVIEHVADPAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 235 ~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
.+++++.++..+++++.++||+||.+++..+.
T Consensus 81 ~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999999999999999999999999999887
No 27
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.80 E-value=1.1e-18 Score=155.83 Aligned_cols=154 Identities=15% Similarity=0.148 Sum_probs=113.8
Q ss_pred CCCeEEEECCCCchhHHHHHHc----CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecc
Q 019123 160 EGLNIVDVGCGGGILSEPLARM----GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASE 235 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~----~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~ 235 (346)
++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.+++++...+...++.++++|+.+++++ .+|+|++.+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 6679999999999999988874 5689999999999999999887655446799999999988754 589999999
Q ss_pred hhcccCC--HHHHHHHHHHhcccCceEEEEecCcchHHHH-HHHHH--HHHHh--hhcC-------CCccccccCCCHHH
Q 019123 236 VIEHVAD--PAEFCKSLSALTVSEGATVISTINRSMRAYA-TAIIA--AEHIL--HWLP-------KGTHQWSSFLTPEE 301 (346)
Q Consensus 236 ~l~~~~~--~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~-~~~~~--~~~~~--~~~~-------~~~~~~~~~~~~~~ 301 (346)
+++|+.+ ...++++++++|||||.|++.++........ ..+.. ..+.. .+-. .........++.++
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~ 210 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIET 210 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHHH
Confidence 9999864 4689999999999999999997643221111 11110 00000 0000 00011345789999
Q ss_pred HHHHHHHCCCcEEE
Q 019123 302 LVLILQRASIDVKE 315 (346)
Q Consensus 302 ~~~ll~~aGF~~v~ 315 (346)
+.+++++|||..++
T Consensus 211 ~~~~l~~aGF~~~~ 224 (239)
T TIGR00740 211 HKARLKNVGFSHVE 224 (239)
T ss_pred HHHHHHHcCCchHH
Confidence 99999999998654
No 28
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.80 E-value=9.7e-19 Score=156.88 Aligned_cols=154 Identities=15% Similarity=0.133 Sum_probs=112.8
Q ss_pred CCCeEEEECCCCchhHHHHHH----cCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecc
Q 019123 160 EGLNIVDVGCGGGILSEPLAR----MGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASE 235 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~----~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~ 235 (346)
++.+|||||||+|..+..++. .+.+|+|+|+|+.|++.+++++...+...+++++++|+.+++.+ .+|+|++.+
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~ 133 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF 133 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh
Confidence 668999999999999988876 25699999999999999999988766656899999999887753 489999999
Q ss_pred hhcccCC--HHHHHHHHHHhcccCceEEEEecCcchHHHHHH-HHH--HHHH--hhhcC----C---CccccccCCCHHH
Q 019123 236 VIEHVAD--PAEFCKSLSALTVSEGATVISTINRSMRAYATA-IIA--AEHI--LHWLP----K---GTHQWSSFLTPEE 301 (346)
Q Consensus 236 ~l~~~~~--~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~-~~~--~~~~--~~~~~----~---~~~~~~~~~~~~~ 301 (346)
+++++++ ...++++++++|||||.|++.+........... +.. ..+. ..+.. . .........+.++
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~ 213 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVET 213 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHH
Confidence 9999874 357999999999999999998743221111111 000 0000 01100 0 0001223468999
Q ss_pred HHHHHHHCCCcEEE
Q 019123 302 LVLILQRASIDVKE 315 (346)
Q Consensus 302 ~~~ll~~aGF~~v~ 315 (346)
..++|++|||+.+.
T Consensus 214 ~~~~L~~aGF~~v~ 227 (247)
T PRK15451 214 HKARLHKAGFEHSE 227 (247)
T ss_pred HHHHHHHcCchhHH
Confidence 99999999998764
No 29
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.80 E-value=2.8e-18 Score=152.98 Aligned_cols=201 Identities=19% Similarity=0.222 Sum_probs=143.6
Q ss_pred CCCCCCHHHHHHHHHHHHhh--hCcCCCCCccc--ccChhHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHH
Q 019123 101 APSSLKHAELAKFSAIADTW--WDAEGPYKPLH--ALNPTRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSE 176 (346)
Q Consensus 101 ~~~~~~~~~~~~f~~~a~~y--~~~~~~~~~~~--~~n~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~ 176 (346)
...+++.++.+......... |. ++||.... ...++|.++-++++..++ +...+++|||||||.|..++
T Consensus 60 ~~~~l~~~~~~~l~~~l~~l~PWR-KGPf~l~gi~IDtEWrSd~KW~rl~p~l-------~~L~gk~VLDIGC~nGY~~f 131 (315)
T PF08003_consen 60 SASDLSAEQRQQLEQLLKALMPWR-KGPFSLFGIHIDTEWRSDWKWDRLLPHL-------PDLKGKRVLDIGCNNGYYSF 131 (315)
T ss_pred CCCCCCHHHHHHHHHHHHhhCCcc-cCCcccCCEeecccccccchHHHHHhhh-------CCcCCCEEEEecCCCcHHHH
Confidence 34556666666665555554 53 46676543 345577788888877765 45689999999999999999
Q ss_pred HHHHcCC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhcccCCHHHHHHHHHHhcc
Q 019123 177 PLARMGA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEHVADPAEFCKSLSALTV 255 (346)
Q Consensus 177 ~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~Lk 255 (346)
.|+..|+ .|+|+|.++...-+..-...-.+....+.++...+++++. .+.||+|+|..+|+|..+|...|++++..|+
T Consensus 132 rM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~ 210 (315)
T PF08003_consen 132 RMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLR 210 (315)
T ss_pred HHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhC
Confidence 9999998 6999999986665432211111111334444457788886 7899999999999999999999999999999
Q ss_pred cCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCcc----ccccCCCHHHHHHHHHHCCCcEEEEeccc
Q 019123 256 SEGATVISTINRSMRAYATAIIAAEHILHWLPKGTH----QWSSFLTPEELVLILQRASIDVKEMAGFV 320 (346)
Q Consensus 256 pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ll~~aGF~~v~~~~~~ 320 (346)
|||.+++.+....... ..-..|.+.| ...-.++...+..+++.+||+.+++-...
T Consensus 211 ~gGeLvLETlvi~g~~----------~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 211 PGGELVLETLVIDGDE----------NTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDVS 269 (315)
T ss_pred CCCEEEEEEeeecCCC----------ceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecCc
Confidence 9999999876432111 0112232222 22346899999999999999999875543
No 30
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.79 E-value=1.2e-18 Score=150.92 Aligned_cols=139 Identities=16% Similarity=0.178 Sum_probs=110.5
Q ss_pred CCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhc
Q 019123 159 FEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIE 238 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~ 238 (346)
.++.+|||+|||+|.++..+++.|.+|+|+|+|+.|++.++++....++ .++.+.+.|+.++++ +++||+|++..+++
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~-~~~fD~I~~~~~~~ 106 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTF-DGEYDFILSTVVLM 106 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCc-CCCcCEEEEecchh
Confidence 3568999999999999999999999999999999999999998877666 568899999987765 45799999999998
Q ss_pred ccC--CHHHHHHHHHHhcccCceEEEEec-CcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEE
Q 019123 239 HVA--DPAEFCKSLSALTVSEGATVISTI-NRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKE 315 (346)
Q Consensus 239 ~~~--~~~~~l~~~~r~LkpgG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~ 315 (346)
+++ +...++++++++|||||.+++.+. ...... .+.+ ....++.+++..+++ ||+++.
T Consensus 107 ~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~--------------~~~~---~~~~~~~~el~~~~~--~~~~~~ 167 (197)
T PRK11207 107 FLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP--------------CTVG---FPFAFKEGELRRYYE--GWEMVK 167 (197)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCC--------------CCCC---CCCccCHHHHHHHhC--CCeEEE
Confidence 876 457899999999999999766543 221100 0011 123578899999997 999988
Q ss_pred Eec
Q 019123 316 MAG 318 (346)
Q Consensus 316 ~~~ 318 (346)
+..
T Consensus 168 ~~~ 170 (197)
T PRK11207 168 YNE 170 (197)
T ss_pred eeC
Confidence 654
No 31
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.79 E-value=4.5e-18 Score=154.90 Aligned_cols=154 Identities=22% Similarity=0.233 Sum_probs=118.6
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHc-C--CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEe
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARM-G--ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIA 233 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~-~--~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~ 233 (346)
...++.+|||||||+|.++..++.. + .+|+++|+++.|++.++++....++ .++.|+.+|++++++++++||+|++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhCCCCCCceeEEEE
Confidence 4457889999999999988777664 3 3799999999999999998877665 5899999999998887889999999
Q ss_pred cchhcccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcE
Q 019123 234 SEVIEHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDV 313 (346)
Q Consensus 234 ~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~ 313 (346)
..++++.++...++++++++|||||.|++.++..... ....+... .. .+. + .....++..++.++++++||..
T Consensus 153 ~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~-~~~~~~~~-~~-~~~--~--~~~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 153 NCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGE-LPEEIRND-AE-LYA--G--CVAGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred cCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCC-CCHHHHHh-HH-HHh--c--cccCCCCHHHHHHHHHHCCCCc
Confidence 9999999999999999999999999999987643211 00011100 00 010 0 0123567899999999999999
Q ss_pred EEEec
Q 019123 314 KEMAG 318 (346)
Q Consensus 314 v~~~~ 318 (346)
+.+..
T Consensus 226 v~i~~ 230 (272)
T PRK11873 226 ITIQP 230 (272)
T ss_pred eEEEe
Confidence 87643
No 32
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.79 E-value=2e-18 Score=152.74 Aligned_cols=146 Identities=20% Similarity=0.216 Sum_probs=118.9
Q ss_pred CeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhcc
Q 019123 162 LNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEH 239 (346)
Q Consensus 162 ~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~ 239 (346)
++|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++...++..++.++..|+...+. .++||+|++..+++|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~-~~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF-PDTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC-CCCCCEeehHHHHHh
Confidence 37999999999999999886 369999999999999999999887777889999999876655 358999999999999
Q ss_pred cCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEEecc
Q 019123 240 VADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMAGF 319 (346)
Q Consensus 240 ~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~ 319 (346)
+.++..++++++++|||||.+++.++...... .. ........+++..++.++++++||++++...+
T Consensus 80 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~------------~~--~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~ 145 (224)
T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLADFIANLLS------------AI--EHEETTSYLVTREEWAELLARNNLRVVEGVDA 145 (224)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEEcccccCc------------cc--cccccccccCCHHHHHHHHHHCCCeEEEeEEC
Confidence 99999999999999999999999987432100 00 00001123678999999999999999987766
Q ss_pred ccC
Q 019123 320 VYN 322 (346)
Q Consensus 320 ~~~ 322 (346)
...
T Consensus 146 ~~~ 148 (224)
T smart00828 146 SLE 148 (224)
T ss_pred cHh
Confidence 543
No 33
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.79 E-value=8.2e-18 Score=148.27 Aligned_cols=161 Identities=24% Similarity=0.366 Sum_probs=121.7
Q ss_pred CCCCeEEEECCCCchhHHHHHHcCC---eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecc
Q 019123 159 FEGLNIVDVGCGGGILSEPLARMGA---TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASE 235 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~~~---~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~ 235 (346)
.++.+|||+|||+|.++..++..+. +++++|+++.+++.++++.. ...++.++.+|+.+++++.++||+|++.+
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~~ 114 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFEDNSFDAVTIAF 114 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCCCcEEEEEEee
Confidence 3678999999999999999988743 89999999999999998875 22578999999998877677899999999
Q ss_pred hhcccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHH--HHH----hhhcCCCc-------cccccCCCHHHH
Q 019123 236 VIEHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAA--EHI----LHWLPKGT-------HQWSSFLTPEEL 302 (346)
Q Consensus 236 ~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~-------~~~~~~~~~~~~ 302 (346)
+++++.++..+++++.++|+|||.+++.++.............. ..+ ..+..... ..+..+++..++
T Consensus 115 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (223)
T TIGR01934 115 GLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEEL 194 (223)
T ss_pred eeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999987654322111111000 000 00110010 012457899999
Q ss_pred HHHHHHCCCcEEEEeccccC
Q 019123 303 VLILQRASIDVKEMAGFVYN 322 (346)
Q Consensus 303 ~~ll~~aGF~~v~~~~~~~~ 322 (346)
..+++++||+++.+..+.+.
T Consensus 195 ~~~l~~aGf~~~~~~~~~~~ 214 (223)
T TIGR01934 195 AAMLKEAGFEEVRYRSLTFG 214 (223)
T ss_pred HHHHHHcCCccceeeeeecc
Confidence 99999999999887765554
No 34
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.79 E-value=6.9e-18 Score=152.49 Aligned_cols=150 Identities=18% Similarity=0.226 Sum_probs=112.0
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEec
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIAS 234 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~ 234 (346)
...++.+|||||||+|.++..++.. +.+|+|+|+|+.|++.++++. .++.|+.+|+..+. ++++||+|+++
T Consensus 28 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~-~~~~fD~v~~~ 100 (258)
T PRK01683 28 PLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQ-PPQALDLIFAN 100 (258)
T ss_pred CCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccC-CCCCccEEEEc
Confidence 4456789999999999999999886 469999999999999999875 46889999998764 45689999999
Q ss_pred chhcccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHH----HHHhhhcCCCccccccCCCHHHHHHHHHHCC
Q 019123 235 EVIEHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAA----EHILHWLPKGTHQWSSFLTPEELVLILQRAS 310 (346)
Q Consensus 235 ~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 310 (346)
.+++|++++..++++++++|||||.+++..+..........+... .|...+...+ .....+++..++.+++.++|
T Consensus 101 ~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~~~~~~l~~~g 179 (258)
T PRK01683 101 ASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRG-ARRAPLPPPHAYYDALAPAA 179 (258)
T ss_pred cChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhcccc-ccCcCCCCHHHHHHHHHhCC
Confidence 999999999999999999999999999976543211111111100 1111111111 11124678889999999999
Q ss_pred CcEE
Q 019123 311 IDVK 314 (346)
Q Consensus 311 F~~v 314 (346)
+.+.
T Consensus 180 ~~v~ 183 (258)
T PRK01683 180 CRVD 183 (258)
T ss_pred Ccee
Confidence 9864
No 35
>PRK06202 hypothetical protein; Provisional
Probab=99.77 E-value=7.7e-18 Score=149.77 Aligned_cols=155 Identities=26% Similarity=0.384 Sum_probs=114.8
Q ss_pred CCCCeEEEECCCCchhHHHHHHc----C--CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEE
Q 019123 159 FEGLNIVDVGCGGGILSEPLARM----G--ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVI 232 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~----~--~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~ 232 (346)
.++.+|||||||+|.++..++.. | .+|+|+|+++.|++.++++... .++.+...++..++.++++||+|+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~----~~~~~~~~~~~~l~~~~~~fD~V~ 134 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR----PGVTFRQAVSDELVAEGERFDVVT 134 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc----CCCeEEEEecccccccCCCccEEE
Confidence 45679999999999998888752 3 4899999999999999887643 346677777777766678999999
Q ss_pred ecchhcccCCH--HHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHh-h-hc-CCCccccccCCCHHHHHHHHH
Q 019123 233 ASEVIEHVADP--AEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHIL-H-WL-PKGTHQWSSFLTPEELVLILQ 307 (346)
Q Consensus 233 ~~~~l~~~~~~--~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~-~~~~~~~~~~~~~~~~~~ll~ 307 (346)
++++++|+++. ..++++++++++ |.+++.++......+........... . +. .+...++.++|+++++.++++
T Consensus 135 ~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~ 212 (232)
T PRK06202 135 SNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAP 212 (232)
T ss_pred ECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhh
Confidence 99999999885 479999999998 67777777765433322222221211 1 11 223345678999999999999
Q ss_pred HCCCcEEEEeccc
Q 019123 308 RASIDVKEMAGFV 320 (346)
Q Consensus 308 ~aGF~~v~~~~~~ 320 (346)
+ ||++.....+.
T Consensus 213 ~-Gf~~~~~~~~~ 224 (232)
T PRK06202 213 Q-GWRVERQWPFR 224 (232)
T ss_pred C-CCeEEecccee
Confidence 9 99987654443
No 36
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.77 E-value=1.6e-17 Score=147.92 Aligned_cols=139 Identities=19% Similarity=0.325 Sum_probs=112.2
Q ss_pred CCCeEEEECCCCchhHHHHHHcCC--eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchh
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGA--TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVI 237 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~--~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l 237 (346)
.+.+|||+|||+|.++..++..+. +|+++|+++.++..++++.. .++.++.+|+++.++++++||+|++..++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l 108 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLAL 108 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhhh
Confidence 457999999999999999988753 68999999999999988764 36889999999988778899999999999
Q ss_pred cccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEE
Q 019123 238 EHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEM 316 (346)
Q Consensus 238 ~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (346)
+|+.++..++.+++++|||||.+++.++.............. ....+++.+++.+++.++ |..+.+
T Consensus 109 ~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~~~-f~~~~~ 174 (240)
T TIGR02072 109 QWCDDLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQ------------HGLRYLSLDELKALLKNS-FELLTL 174 (240)
T ss_pred hhccCHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHH------------hccCCCCHHHHHHHHHHh-cCCcEE
Confidence 999999999999999999999999998866543221111100 113467788888888887 776654
No 37
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.77 E-value=5.3e-18 Score=133.19 Aligned_cols=104 Identities=31% Similarity=0.404 Sum_probs=88.5
Q ss_pred CCCeEEEECCCCchhHHHHHH--cCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCc-ccccccCCceeEEEecc-
Q 019123 160 EGLNIVDVGCGGGILSEPLAR--MGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTA-EKLVEEQRKFDAVIASE- 235 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~-~~l~~~~~~fDlv~~~~- 235 (346)
|+.+|||||||+|.++..+++ .+.+|+|+|+++.|++.+++++...+...++.++++|+ .... ....||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD-FLEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-TSSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-cCCCCCEEEECCC
Confidence 467999999999999999999 68899999999999999999996666668999999999 3332 345699999998
Q ss_pred hhcccC---CHHHHHHHHHHhcccCceEEEEe
Q 019123 236 VIEHVA---DPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 236 ~l~~~~---~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
+++++. +...+++.+++.|+|||+|++.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 555443 45689999999999999999875
No 38
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.76 E-value=8.2e-18 Score=145.45 Aligned_cols=139 Identities=16% Similarity=0.145 Sum_probs=108.3
Q ss_pred CCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhcc
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEH 239 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~ 239 (346)
++.+|||+|||+|.++..+++.|.+|+|+|+|+.|++.+++++...++ ++.+...|+...+. +++||+|++..++++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~-~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAAL-NEDYDFIFSTVVFMF 106 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhccc-cCCCCEEEEeccccc
Confidence 567999999999999999999999999999999999999988776664 37778888766554 357999999999988
Q ss_pred cC--CHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEEe
Q 019123 240 VA--DPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMA 317 (346)
Q Consensus 240 ~~--~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (346)
++ +...++++++++|||||++++.+...... .+.+ ......++++++.+++. +|+++.+.
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~---------------~~~~-~~~~~~~~~~el~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIVAAMDTAD---------------YPCH-MPFSFTFKEDELRQYYA--DWELLKYN 168 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEEecccCC---------------CCCC-CCcCccCCHHHHHHHhC--CCeEEEee
Confidence 85 45689999999999999977665422110 0111 11234689999999996 59998776
Q ss_pred cc
Q 019123 318 GF 319 (346)
Q Consensus 318 ~~ 319 (346)
..
T Consensus 169 e~ 170 (195)
T TIGR00477 169 EA 170 (195)
T ss_pred cc
Confidence 43
No 39
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.75 E-value=1e-17 Score=140.15 Aligned_cols=143 Identities=18% Similarity=0.109 Sum_probs=107.9
Q ss_pred EEEcCChHHHHHHHHhhccC--CCCCceEEEEcCcccccccCCceeEEEecchhcccCCHHHHHHHHHHhcccCceEEEE
Q 019123 186 TGIDAVEKNIKIARLHADLD--PETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVIS 263 (346)
Q Consensus 186 ~giD~s~~~l~~a~~~~~~~--~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~ 263 (346)
+|+|+|++|++.|+++.... +...+++|+++|++++++++++||+|++.++++++.|+..++++++|+|||||.|++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 48999999999998776432 2225799999999999998999999999999999999999999999999999999999
Q ss_pred ecCcchHHHHHHHHHHHHHh------hhcCCC--cc-----ccccCCCHHHHHHHHHHCCCcEEEEeccccCCCCCcee
Q 019123 264 TINRSMRAYATAIIAAEHIL------HWLPKG--TH-----QWSSFLTPEELVLILQRASIDVKEMAGFVYNPLTGRWS 329 (346)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~------~~~~~~--~~-----~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~ 329 (346)
++......+..... ..+.. ..+... .+ ++..+++++++.++|+++||+.+....+.++..+-+++
T Consensus 81 d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~ 158 (160)
T PLN02232 81 DFNKSNQSVTTFMQ-GWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFMGNLVA 158 (160)
T ss_pred ECCCCChHHHHHHH-HHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHhHeeEe
Confidence 98765433222111 00000 001111 11 22578999999999999999999888877776655543
No 40
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.75 E-value=4.4e-17 Score=143.63 Aligned_cols=152 Identities=22% Similarity=0.268 Sum_probs=114.6
Q ss_pred CCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhc
Q 019123 159 FEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIE 238 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~ 238 (346)
.++.+|||+|||+|.++..++..+.+|+|+|+++.|+..+++++...+...++.|.++|+..++ ++||+|++..+++
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~ 130 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLI 130 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHH
Confidence 4678999999999999999999888999999999999999999876665457999999998875 6899999999999
Q ss_pred ccCC--HHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCC-ccccccCCCHHHHHHHHHHCCCcEEE
Q 019123 239 HVAD--PAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKG-THQWSSFLTPEELVLILQRASIDVKE 315 (346)
Q Consensus 239 ~~~~--~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~aGF~~v~ 315 (346)
|++. ...+++++++++++|+++.+...... ... ........+.. ......+++.+++.++++++||+++.
T Consensus 131 ~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~ 203 (219)
T TIGR02021 131 HYPASDMAKALGHLASLTKERVIFTFAPKTAW----LAF---LKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVR 203 (219)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCCchH----HHH---HHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeee
Confidence 8864 56789999999987766655432211 110 01111112211 11223567999999999999999998
Q ss_pred Eeccc
Q 019123 316 MAGFV 320 (346)
Q Consensus 316 ~~~~~ 320 (346)
...+.
T Consensus 204 ~~~~~ 208 (219)
T TIGR02021 204 EGLVS 208 (219)
T ss_pred eeccc
Confidence 76443
No 41
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.75 E-value=5.8e-17 Score=138.49 Aligned_cols=130 Identities=24% Similarity=0.257 Sum_probs=107.7
Q ss_pred CCCeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchh
Q 019123 160 EGLNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVI 237 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l 237 (346)
++.+|||||||+|.++..++.. +.+|+++|+++.|++.+++++...++ .+++++.+|+++++. .++||+|++..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l-~~i~~~~~d~~~~~~-~~~fDlV~~~~-- 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL-KNVTVVHGRAEEFGQ-EEKFDVVTSRA-- 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC-CCEEEEeccHhhCCC-CCCccEEEEcc--
Confidence 4789999999999999988864 56999999999999999999988887 459999999998776 67899999864
Q ss_pred cccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEEe
Q 019123 238 EHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMA 317 (346)
Q Consensus 238 ~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (346)
+.+++.+++.++++|||||.|++..... ...++..+.+..|+.+....
T Consensus 121 --~~~~~~~l~~~~~~LkpGG~lv~~~~~~------------------------------~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 121 --VASLSDLVELCLPLLKPGGRFLALKGRD------------------------------PEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred --ccCHHHHHHHHHHhcCCCeEEEEEeCCC------------------------------hHHHHHHHHHhcCceEeeeE
Confidence 4578899999999999999999886432 22467778888899988766
Q ss_pred ccccCCCC
Q 019123 318 GFVYNPLT 325 (346)
Q Consensus 318 ~~~~~~~~ 325 (346)
.+...-+.
T Consensus 169 ~~~~~~~~ 176 (187)
T PRK00107 169 ELTLPGLD 176 (187)
T ss_pred EEecCCCC
Confidence 65554443
No 42
>PRK08317 hypothetical protein; Provisional
Probab=99.75 E-value=3.2e-17 Score=145.90 Aligned_cols=156 Identities=23% Similarity=0.317 Sum_probs=116.7
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHcC---CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEe
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARMG---ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIA 233 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~ 233 (346)
...++.+|||+|||+|.++..++... .+|+|+|+++.+++.++++.... ..++.+...|+..+++++++||+|++
T Consensus 16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~~~~~D~v~~ 93 (241)
T PRK08317 16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL--GPNVEFVRGDADGLPFPDGSFDAVRS 93 (241)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC--CCceEEEecccccCCCCCCCceEEEE
Confidence 45577899999999999999998863 58999999999999998873322 26799999999888877889999999
Q ss_pred cchhcccCCHHHHHHHHHHhcccCceEEEEecCcchH---HHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCC
Q 019123 234 SEVIEHVADPAEFCKSLSALTVSEGATVISTINRSMR---AYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRAS 310 (346)
Q Consensus 234 ~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 310 (346)
..+++|+.++..++++++++|||||.+++.++..... ..... ........+... ........++.++++++|
T Consensus 94 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~l~~aG 168 (241)
T PRK08317 94 DRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRA-LMRKILNFWSDH----FADPWLGRRLPGLFREAG 168 (241)
T ss_pred echhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChH-HHHHHHHHHHhc----CCCCcHHHHHHHHHHHcC
Confidence 9999999999999999999999999999987642110 00000 000111111111 122345678999999999
Q ss_pred CcEEEEecc
Q 019123 311 IDVKEMAGF 319 (346)
Q Consensus 311 F~~v~~~~~ 319 (346)
|.++.++..
T Consensus 169 f~~~~~~~~ 177 (241)
T PRK08317 169 LTDIEVEPY 177 (241)
T ss_pred CCceeEEEE
Confidence 998765443
No 43
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.74 E-value=5.3e-17 Score=148.79 Aligned_cols=138 Identities=19% Similarity=0.209 Sum_probs=109.9
Q ss_pred CCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhcc
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEH 239 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~ 239 (346)
++.+|||+|||+|.++..++..|.+|+|+|+|+.|++.+++++...++ ++.+...|+..... +++||+|++..++++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASI-QEEYDFILSTVVLMF 196 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccc-cCCccEEEEcchhhh
Confidence 456999999999999999999999999999999999999998877765 68888888877654 678999999999998
Q ss_pred cC--CHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEEe
Q 019123 240 VA--DPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMA 317 (346)
Q Consensus 240 ~~--~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (346)
+. +...++++++++|+|||++++........ .+ ....+...++.+++.+++.. |+++.+.
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~---------------~~-~~~p~~~~~~~~el~~~~~~--~~i~~~~ 258 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTED---------------YP-CPMPFSFTFKEGELKDYYQD--WEIVKYN 258 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEeccccc---------------CC-CCCCCCcccCHHHHHHHhCC--CEEEEEe
Confidence 86 45689999999999999977754322110 00 01122346889999999954 9998875
Q ss_pred c
Q 019123 318 G 318 (346)
Q Consensus 318 ~ 318 (346)
.
T Consensus 259 e 259 (287)
T PRK12335 259 E 259 (287)
T ss_pred c
Confidence 3
No 44
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.72 E-value=5.4e-17 Score=135.61 Aligned_cols=152 Identities=20% Similarity=0.248 Sum_probs=118.3
Q ss_pred CCCeEEEECCCCchhHHHHH-HcCCeEEEEcCChHHHHHHHHhhccCCCCCceE-EEEcCccccc-ccCCceeEEEecch
Q 019123 160 EGLNIVDVGCGGGILSEPLA-RMGATVTGIDAVEKNIKIARLHADLDPETSTIE-YCCTTAEKLV-EEQRKFDAVIASEV 236 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~-~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~-~~~~d~~~l~-~~~~~fDlv~~~~~ 236 (346)
....|||||||||..-.+.- ..+.+|+++|.++.|-+.+.+.+..... .++. |+.++.++++ .+++++|.|++.++
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 44578999999998765543 2477999999999999999999887643 5666 9999999998 68999999999999
Q ss_pred hcccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHh--hhcCCCccccccCCCHHHHHHHHHHCCCcEE
Q 019123 237 IEHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHIL--HWLPKGTHQWSSFLTPEELVLILQRASIDVK 314 (346)
Q Consensus 237 l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v 314 (346)
|....++.+.|+++.|+|+|||.+++.+...........+.....-. +...++-. .+ -+..+.|++|-|...
T Consensus 155 LCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~-----lt-rd~~e~Leda~f~~~ 228 (252)
T KOG4300|consen 155 LCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCV-----LT-RDTGELLEDAEFSID 228 (252)
T ss_pred EeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceE-----Ee-hhHHHHhhhcccccc
Confidence 99999999999999999999999999999876655555544432222 22222211 22 356678899999987
Q ss_pred EEec
Q 019123 315 EMAG 318 (346)
Q Consensus 315 ~~~~ 318 (346)
....
T Consensus 229 ~~kr 232 (252)
T KOG4300|consen 229 SCKR 232 (252)
T ss_pred hhhc
Confidence 6544
No 45
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.72 E-value=7.6e-16 Score=141.71 Aligned_cols=148 Identities=20% Similarity=0.248 Sum_probs=103.2
Q ss_pred CCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCC----CCceEEEEcCcccccccCCceeEEEecc
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPE----TSTIEYCCTTAEKLVEEQRKFDAVIASE 235 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~----~~~v~~~~~d~~~l~~~~~~fDlv~~~~ 235 (346)
++.+|||||||+|.++..+++.|.+|+|+|+|+.|++.+++++..... ..++.|.+.|++.+ +++||+|+|..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcC
Confidence 567999999999999999999999999999999999999998765321 14678888887654 56899999999
Q ss_pred hhcccCCH--HHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCc-cccccCCCHHHHHHHHHHCCCc
Q 019123 236 VIEHVADP--AEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGT-HQWSSFLTPEELVLILQRASID 312 (346)
Q Consensus 236 ~l~~~~~~--~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~aGF~ 312 (346)
+++|+++. ..+++.+.+ +.+||+++...+......... ......+... .....+++.+++.++++++||+
T Consensus 221 vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~------~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~ 293 (315)
T PLN02585 221 VLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILK------RIGELFPGPSKATRAYLHAEADVERALKKAGWK 293 (315)
T ss_pred EEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHH------HHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCE
Confidence 99998764 346666665 456666443322211111100 1111222111 1112345899999999999999
Q ss_pred EEEEe
Q 019123 313 VKEMA 317 (346)
Q Consensus 313 ~v~~~ 317 (346)
++..+
T Consensus 294 v~~~~ 298 (315)
T PLN02585 294 VARRE 298 (315)
T ss_pred EEEEE
Confidence 87643
No 46
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.71 E-value=4e-16 Score=144.42 Aligned_cols=153 Identities=16% Similarity=0.073 Sum_probs=114.1
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHcC--CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEec
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARMG--ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIAS 234 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~ 234 (346)
...+..+|||||||+|.++..++++. .+++++|+ +.+++.+++++...++..+++++.+|+.+.+++ .+|+|++.
T Consensus 146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~--~~D~v~~~ 222 (306)
T TIGR02716 146 KLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP--EADAVLFC 222 (306)
T ss_pred CCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC--CCCEEEeE
Confidence 34566899999999999999999874 58999998 799999999988888878899999999765554 36999999
Q ss_pred chhcccCCH--HHHHHHHHHhcccCceEEEEecCcc--hHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCC
Q 019123 235 EVIEHVADP--AEFCKSLSALTVSEGATVISTINRS--MRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRAS 310 (346)
Q Consensus 235 ~~l~~~~~~--~~~l~~~~r~LkpgG~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 310 (346)
.+++++.+. ..++++++++|||||.+++.++... .......+.. +.. .. ........+...+++.++++++|
T Consensus 223 ~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~--~~~-~~-~~~~~~~~~~~~~e~~~ll~~aG 298 (306)
T TIGR02716 223 RILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSH--YIL-GA-GMPFSVLGFKEQARYKEILESLG 298 (306)
T ss_pred hhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHH--HHH-Hc-ccccccccCCCHHHHHHHHHHcC
Confidence 999888654 4799999999999999999986322 1111111111 110 00 00112234556899999999999
Q ss_pred CcEEEE
Q 019123 311 IDVKEM 316 (346)
Q Consensus 311 F~~v~~ 316 (346)
|+.+++
T Consensus 299 f~~v~~ 304 (306)
T TIGR02716 299 YKDVTM 304 (306)
T ss_pred CCeeEe
Confidence 998764
No 47
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.70 E-value=5e-16 Score=137.79 Aligned_cols=152 Identities=24% Similarity=0.256 Sum_probs=109.1
Q ss_pred CCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhc
Q 019123 159 FEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIE 238 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~ 238 (346)
.++.+|||||||+|.++..++..+..|+|+|+++.|++.+++++...+...++.|..+|+. ..+++||+|++..+++
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~---~~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE---SLLGRFDTVVCLDVLI 138 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch---hccCCcCEEEEcchhh
Confidence 4667999999999999999999988999999999999999998877665567899999843 3357899999999998
Q ss_pred ccCCH--HHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCC-ccccccCCCHHHHHHHHHHCCCcEEE
Q 019123 239 HVADP--AEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKG-THQWSSFLTPEELVLILQRASIDVKE 315 (346)
Q Consensus 239 ~~~~~--~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~aGF~~v~ 315 (346)
|+++. ..+++.+.+.+++++++.+. . .... . . ....+....+.. ......+++..++.++++++||+++.
T Consensus 139 ~~~~~~~~~~l~~l~~~~~~~~~i~~~-~-~~~~-~-~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 211 (230)
T PRK07580 139 HYPQEDAARMLAHLASLTRGSLIFTFA-P-YTPL-L-A---LLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVR 211 (230)
T ss_pred cCCHHHHHHHHHHHHhhcCCeEEEEEC-C-ccHH-H-H---HHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEe
Confidence 88754 56888888877544443322 1 1110 0 0 011111222211 11123467899999999999999988
Q ss_pred Eeccc
Q 019123 316 MAGFV 320 (346)
Q Consensus 316 ~~~~~ 320 (346)
...+.
T Consensus 212 ~~~~~ 216 (230)
T PRK07580 212 TERIS 216 (230)
T ss_pred eeecc
Confidence 76544
No 48
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.70 E-value=6.5e-17 Score=138.49 Aligned_cols=206 Identities=17% Similarity=0.206 Sum_probs=135.4
Q ss_pred CCCCCHHHHHHHHHHHHhhhCcCCCCCcccccChhHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHHHHHc
Q 019123 102 PSSLKHAELAKFSAIADTWWDAEGPYKPLHALNPTRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARM 181 (346)
Q Consensus 102 ~~~~~~~~~~~f~~~a~~y~~~~~~~~~~~~~n~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~ 181 (346)
...+..++..+|..-+.+|||.-.......... . ..|+...+..++. .......+||+||||.|...+.+++-
T Consensus 20 ~~~~~~~~~~~y~~~~~k~wD~fy~~~~~rFfk-d-R~wL~~Efpel~~-----~~~~~~~~ilEvGCGvGNtvfPll~~ 92 (264)
T KOG2361|consen 20 ASRVLEEEVVKYEREASKYWDTFYKIHENRFFK-D-RNWLLREFPELLP-----VDEKSAETILEVGCGVGNTVFPLLKT 92 (264)
T ss_pred ccccchhhhhhhhcchhhhhhhhhhhccccccc-h-hHHHHHhhHHhhC-----ccccChhhheeeccCCCcccchhhhc
Confidence 345666777778888999998632111111011 1 1233222222221 11222238999999999999999876
Q ss_pred ----CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccc----cccCCceeEEEecchhcccC--CHHHHHHHHH
Q 019123 182 ----GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKL----VEEQRKFDAVIASEVIEHVA--DPAEFCKSLS 251 (346)
Q Consensus 182 ----~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l----~~~~~~fDlv~~~~~l~~~~--~~~~~l~~~~ 251 (346)
+..|+++|.|+.+++..+++..... .++.-.+.|+... +.+.+++|+|++.++|..+. ....++++++
T Consensus 93 ~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~ 170 (264)
T KOG2361|consen 93 SPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLR 170 (264)
T ss_pred CCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHH
Confidence 3589999999999999998876554 4555555565332 34678999999999998774 3568999999
Q ss_pred HhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEE
Q 019123 252 ALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEM 316 (346)
Q Consensus 252 r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (346)
++|||||.+++-++...+...++.........+..-.+...-..||+.+++..|+.+|||..++.
T Consensus 171 ~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~ 235 (264)
T KOG2361|consen 171 TLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQL 235 (264)
T ss_pred HHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchhcc
Confidence 99999999999998765543333221111111111112222246899999999999999998763
No 49
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.69 E-value=5.8e-16 Score=130.45 Aligned_cols=165 Identities=18% Similarity=0.202 Sum_probs=130.7
Q ss_pred CCCCCCCeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEe
Q 019123 156 ARPFEGLNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIA 233 (346)
Q Consensus 156 ~~~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~ 233 (346)
.+.....+|.|+|||+|..+..|+++ ++.++|+|-|++|++.|+++. ++++|..+|+.++. +...+|++++
T Consensus 26 Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~-p~~~~dllfa 98 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWK-PEQPTDLLFA 98 (257)
T ss_pred CCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcC-CCCccchhhh
Confidence 36667889999999999999999998 679999999999999998886 68999999998875 4668999999
Q ss_pred cchhcccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHH---HHhhhcCCCccccccCCCHHHHHHHHHHCC
Q 019123 234 SEVIEHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAE---HILHWLPKGTHQWSSFLTPEELVLILQRAS 310 (346)
Q Consensus 234 ~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 310 (346)
+.++++++|-.++|..+...|.|||.+.+..++.-..+....+.... .....+......-....++..+.++|...+
T Consensus 99 NAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lLa~~~ 178 (257)
T COG4106 99 NAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELLAPLA 178 (257)
T ss_pred hhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHhCccc
Confidence 99999999999999999999999999999988765444333332211 111112221112356789999999999999
Q ss_pred CcEEEEeccccCCCCCc
Q 019123 311 IDVKEMAGFVYNPLTGR 327 (346)
Q Consensus 311 F~~v~~~~~~~~~~~~~ 327 (346)
-++--++..-+.++.+.
T Consensus 179 ~rvDiW~T~Y~h~l~~a 195 (257)
T COG4106 179 CRVDIWHTTYYHQLPGA 195 (257)
T ss_pred ceeeeeeeeccccCCCc
Confidence 99877777667777664
No 50
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.69 E-value=4.2e-16 Score=132.86 Aligned_cols=99 Identities=19% Similarity=0.251 Sum_probs=84.7
Q ss_pred CCCeEEEECCCCchhHHHHHHcC--CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchh
Q 019123 160 EGLNIVDVGCGGGILSEPLARMG--ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVI 237 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~--~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l 237 (346)
++.+|||||||+|.++..++..+ .+|+++|+++.|++.+++++...++ .+++++++|++++. ..++||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~-~~i~~i~~d~~~~~-~~~~fD~I~s~~-- 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL-NNVEIVNGRAEDFQ-HEEQFDVITSRA-- 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC-CCeEEEecchhhcc-ccCCccEEEehh--
Confidence 47899999999999999987653 5899999999999999988877776 46999999998874 367899999865
Q ss_pred cccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 238 EHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 238 ~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
+.+...+++.++++|+|||.+++..
T Consensus 118 --~~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 118 --LASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred --hhCHHHHHHHHHHhcCCCCEEEEEc
Confidence 3467788999999999999999874
No 51
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.68 E-value=5.7e-16 Score=146.89 Aligned_cols=148 Identities=17% Similarity=0.274 Sum_probs=112.1
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHc-CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecc
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARM-GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASE 235 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~ 235 (346)
...++.+|||||||+|.++..+++. +.+|+|+|+|++|++.+++++.. .++++...|+..+ +++||+|++..
T Consensus 164 ~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~----l~v~~~~~D~~~l---~~~fD~Ivs~~ 236 (383)
T PRK11705 164 QLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG----LPVEIRLQDYRDL---NGQFDRIVSVG 236 (383)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc----CeEEEEECchhhc---CCCCCEEEEeC
Confidence 4567889999999999999999876 77999999999999999998743 2478888888765 46899999999
Q ss_pred hhcccCC--HHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcE
Q 019123 236 VIEHVAD--PAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDV 313 (346)
Q Consensus 236 ~l~~~~~--~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~ 313 (346)
+++|+.. +..++++++++|||||.+++.++....... ....++.+++..+ ..+++.+++..+++ .||.+
T Consensus 237 ~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~----~~~~~i~~yifp~----g~lps~~~i~~~~~-~~~~v 307 (383)
T PRK11705 237 MFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDT----NVDPWINKYIFPN----GCLPSVRQIAQASE-GLFVM 307 (383)
T ss_pred chhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCC----CCCCCceeeecCC----CcCCCHHHHHHHHH-CCcEE
Confidence 9999864 578999999999999999998775432110 0011221211111 23678889888876 58999
Q ss_pred EEEeccc
Q 019123 314 KEMAGFV 320 (346)
Q Consensus 314 v~~~~~~ 320 (346)
.+++.+.
T Consensus 308 ~d~~~~~ 314 (383)
T PRK11705 308 EDWHNFG 314 (383)
T ss_pred EEEecCh
Confidence 8876654
No 52
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.68 E-value=1.3e-16 Score=123.15 Aligned_cols=93 Identities=26% Similarity=0.454 Sum_probs=79.7
Q ss_pred EEEECCCCchhHHHHHHcC-----CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecch-h
Q 019123 164 IVDVGCGGGILSEPLARMG-----ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEV-I 237 (346)
Q Consensus 164 vLDiG~G~G~~~~~l~~~~-----~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~-l 237 (346)
|||+|||+|..+..++... .+++|+|+|++|++.++++....+. +++|++.|+.++++.+++||+|++.+. +
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 7999999999999999874 6999999999999999999877553 799999999999888889999999654 9
Q ss_pred cccCC--HHHHHHHHHHhcccCc
Q 019123 238 EHVAD--PAEFCKSLSALTVSEG 258 (346)
Q Consensus 238 ~~~~~--~~~~l~~~~r~LkpgG 258 (346)
+|+++ ...+++++.++|||||
T Consensus 79 ~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC
Confidence 99875 4579999999999998
No 53
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.67 E-value=2.6e-15 Score=129.08 Aligned_cols=153 Identities=16% Similarity=0.098 Sum_probs=113.7
Q ss_pred CCCCCeEEEECCCCchhHHHHHHcC--CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecc
Q 019123 158 PFEGLNIVDVGCGGGILSEPLARMG--ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASE 235 (346)
Q Consensus 158 ~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~ 235 (346)
..++.+|||||||+|.++..++..+ .+|+++|+++.+++.+++++...++ .++.++.+|+.. +. .++||+|++..
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~-~~-~~~~D~v~~~~ 105 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPI-EL-PGKADAIFIGG 105 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchh-hc-CcCCCEEEECC
Confidence 3467899999999999999998763 5899999999999999998877665 468999988743 22 35799999876
Q ss_pred hhcccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEE
Q 019123 236 VIEHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKE 315 (346)
Q Consensus 236 ~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~ 315 (346)
... ....+++.++++|||||.+++.... ..+..++..+++++||+.++
T Consensus 106 ~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~-----------------------------~~~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 106 SGG---NLTAIIDWSLAHLHPGGRLVLTFIL-----------------------------LENLHSALAHLEKCGVSELD 153 (187)
T ss_pred Ccc---CHHHHHHHHHHhcCCCeEEEEEEec-----------------------------HhhHHHHHHHHHHCCCCcce
Confidence 543 4567899999999999999886532 12336778899999998776
Q ss_pred EeccccCCC--CCceeeccCCceeEEEEeeeC
Q 019123 316 MAGFVYNPL--TGRWSLSDDISVNFIAFGTKN 345 (346)
Q Consensus 316 ~~~~~~~~~--~~~~~~~~~~~~~~l~~~rk~ 345 (346)
+..+..... .++..+.....+.|++.+.|+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (187)
T PRK08287 154 CVQLQVSSLTPLGAGHYFKPNNPTFIISCQKE 185 (187)
T ss_pred EEEEEEEeeeEcCcceeeccCCCEEEEEEEcC
Confidence 554433222 122233345566788777663
No 54
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.67 E-value=1.6e-15 Score=127.34 Aligned_cols=150 Identities=17% Similarity=0.242 Sum_probs=114.4
Q ss_pred CCCCeEEEECCCCchhHHHHHH-cCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccc-cc-ccCCceeEEEecc
Q 019123 159 FEGLNIVDVGCGGGILSEPLAR-MGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEK-LV-EEQRKFDAVIASE 235 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~-~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-l~-~~~~~fDlv~~~~ 235 (346)
.++.+|||+|||.|.+...|.+ ++.+.+|+|++++.+..+.++ .+.++++|+++ +. +++++||+|+++.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~gL~~f~d~sFD~VIlsq 83 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEGLADFPDQSFDYVILSQ 83 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHhHhhCCCCCccEEehHh
Confidence 3789999999999999999987 478999999999998888765 36789999966 33 6899999999999
Q ss_pred hhcccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCC---cccc-----ccCCCHHHHHHHHH
Q 019123 236 VIEHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKG---THQW-----SSFLTPEELVLILQ 307 (346)
Q Consensus 236 ~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~ll~ 307 (346)
+|+++.+|..+|+++.|+ |...+++.+|-........+. ...-+|.. .++| .++.|..+|+++.+
T Consensus 84 tLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~----~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~ 156 (193)
T PF07021_consen 84 TLQAVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLL----LRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCR 156 (193)
T ss_pred HHHhHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHH----hcCCCCCCCCCCCcccCCCCcccccHHHHHHHHH
Confidence 999999999999999877 667888888754432211111 01112211 2222 46899999999999
Q ss_pred HCCCcEEEEeccccCC
Q 019123 308 RASIDVKEMAGFVYNP 323 (346)
Q Consensus 308 ~aGF~~v~~~~~~~~~ 323 (346)
+.|+++++...+..+.
T Consensus 157 ~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 157 ELGIRIEERVFLDGGR 172 (193)
T ss_pred HCCCEEEEEEEEcCCC
Confidence 9999999865554433
No 55
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.66 E-value=2.7e-17 Score=126.40 Aligned_cols=95 Identities=26% Similarity=0.357 Sum_probs=65.1
Q ss_pred EEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc--cCCceeEEEecchhccc
Q 019123 165 VDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE--EQRKFDAVIASEVIEHV 240 (346)
Q Consensus 165 LDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~--~~~~fDlv~~~~~l~~~ 240 (346)
||||||+|.++..+++. ..+|+|+|+|+.|++.+++++..... .+......+..+... ..++||+|++..+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN-DNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-cceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 79999999999999998 66999999999999888888877653 233444444333321 23599999999999999
Q ss_pred CCHHHHHHHHHHhcccCceE
Q 019123 241 ADPAEFCKSLSALTVSEGAT 260 (346)
Q Consensus 241 ~~~~~~l~~~~r~LkpgG~~ 260 (346)
+++..+++.++++|||||.|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999986
No 56
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.66 E-value=2e-15 Score=128.35 Aligned_cols=139 Identities=19% Similarity=0.235 Sum_probs=102.0
Q ss_pred CCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhc
Q 019123 159 FEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIE 238 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~ 238 (346)
.++.++||+|||.|+.+.+|+.+|.+|+++|+|+..++.+++.+...++ .++..+.|+.+..++ +.||+|++..+++
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l--~i~~~~~Dl~~~~~~-~~yD~I~st~v~~ 105 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGL--DIRTRVADLNDFDFP-EEYDFIVSTVVFM 105 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT---TEEEEE-BGCCBS-T-TTEEEEEEESSGG
T ss_pred cCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCc--eeEEEEecchhcccc-CCcCEEEEEEEec
Confidence 4678999999999999999999999999999999999999888877775 489999999887764 6899999988888
Q ss_pred ccC--CHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEE
Q 019123 239 HVA--DPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEM 316 (346)
Q Consensus 239 ~~~--~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (346)
++. ..+.+++.+...++|||++++..+..... + + ........+.+.|+...+ +||+++.+
T Consensus 106 fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d----------~-----p-~~~~~~f~~~~~EL~~~y--~dW~il~y 167 (192)
T PF03848_consen 106 FLQRELRPQIIENMKAATKPGGYNLIVTFMETPD----------Y-----P-CPSPFPFLLKPGELREYY--ADWEILKY 167 (192)
T ss_dssp GS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SS----------S--------SS--S--B-TTHHHHHT--TTSEEEEE
T ss_pred cCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCC----------C-----C-CCCCCCcccCHHHHHHHh--CCCeEEEE
Confidence 775 35679999999999999999876532110 0 0 001112346778899888 47999876
Q ss_pred ec
Q 019123 317 AG 318 (346)
Q Consensus 317 ~~ 318 (346)
..
T Consensus 168 ~E 169 (192)
T PF03848_consen 168 NE 169 (192)
T ss_dssp EE
T ss_pred Ec
Confidence 43
No 57
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.65 E-value=4.5e-15 Score=128.30 Aligned_cols=145 Identities=18% Similarity=0.246 Sum_probs=104.6
Q ss_pred CCCeEEEECCCCchhHHHHHHc-CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccc-cc-ccCCceeEEEecch
Q 019123 160 EGLNIVDVGCGGGILSEPLARM-GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEK-LV-EEQRKFDAVIASEV 236 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-l~-~~~~~fDlv~~~~~ 236 (346)
++.+|||||||+|.++..+++. +..++|+|++++|++.++++ +++++++|+.+ ++ +++++||+|++..+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~ 84 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDKSFDYVILSQT 84 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCCCcCEEEEhhH
Confidence 5679999999999999988765 55899999999999988642 36788888865 43 56789999999999
Q ss_pred hcccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCC--------ccccccCCCHHHHHHHHHH
Q 019123 237 IEHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKG--------THQWSSFLTPEELVLILQR 308 (346)
Q Consensus 237 l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ll~~ 308 (346)
++|+.++..+++++.+++++ +++..++.........+. .....+.. ...+.++++.+++.+++++
T Consensus 85 l~~~~d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~ 157 (194)
T TIGR02081 85 LQATRNPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSIL----TKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGE 157 (194)
T ss_pred hHcCcCHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHH----hCCccccCCCCCccccCCCCcccCcHHHHHHHHHH
Confidence 99999999999999887664 444444432211111110 00011100 1112468999999999999
Q ss_pred CCCcEEEEecc
Q 019123 309 ASIDVKEMAGF 319 (346)
Q Consensus 309 aGF~~v~~~~~ 319 (346)
+||+++....+
T Consensus 158 ~Gf~v~~~~~~ 168 (194)
T TIGR02081 158 LNLRILDRAAF 168 (194)
T ss_pred CCCEEEEEEEe
Confidence 99999886655
No 58
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.65 E-value=5.9e-15 Score=128.90 Aligned_cols=162 Identities=18% Similarity=0.213 Sum_probs=118.4
Q ss_pred CCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccC-----------CCCCceEEEEcCccccccc-CCc
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLD-----------PETSTIEYCCTTAEKLVEE-QRK 227 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~-----------~~~~~v~~~~~d~~~l~~~-~~~ 227 (346)
++.+|||+|||.|..+..|+++|.+|+|+|+|+.+++.+....... .-..+++++++|+.+++.. .+.
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~ 113 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGP 113 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCC
Confidence 5679999999999999999999999999999999999864422110 0124689999999887642 457
Q ss_pred eeEEEecchhcccCC--HHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHH
Q 019123 228 FDAVIASEVIEHVAD--PAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLI 305 (346)
Q Consensus 228 fDlv~~~~~l~~~~~--~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (346)
||+|+-..+++|++. ...+++.+.++|||||.+++..+...... ..+ . ...++.+++.++
T Consensus 114 fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~---------------~~g-p--p~~~~~~eL~~~ 175 (213)
T TIGR03840 114 VDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSE---------------MAG-P--PFSVSPAEVEAL 175 (213)
T ss_pred cCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCC---------------CCC-c--CCCCCHHHHHHH
Confidence 999999888888864 34689999999999998777766432100 011 1 135889999998
Q ss_pred HHHCCCcEEEEecccc---CCCCCceeeccCCceeEEE
Q 019123 306 LQRASIDVKEMAGFVY---NPLTGRWSLSDDISVNFIA 340 (346)
Q Consensus 306 l~~aGF~~v~~~~~~~---~~~~~~~~~~~~~~~~~l~ 340 (346)
+. .+|.+..+..... .|.-++|+++......||.
T Consensus 176 f~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (213)
T TIGR03840 176 YG-GHYEIELLESRDVLEDNPRFGKKGLSRLTESVWLL 212 (213)
T ss_pred hc-CCceEEEEeeccccccCchhhhcCcchhheEEEEe
Confidence 86 3577766554432 3444778887777766664
No 59
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.63 E-value=9.5e-15 Score=124.65 Aligned_cols=126 Identities=17% Similarity=0.198 Sum_probs=102.8
Q ss_pred CCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhcc
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEH 239 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~ 239 (346)
++.+|||+|||+|.++..++..+.+|+++|+++.|++.+++++...+. ++.++.+|+.+.. .++||+|+++..+++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV--RGKFDVILFNPPYLP 94 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc--CCcccEEEECCCCCC
Confidence 557899999999999999999888999999999999999998876653 6888999986654 458999999876655
Q ss_pred cCC---------------------HHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCC
Q 019123 240 VAD---------------------PAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLT 298 (346)
Q Consensus 240 ~~~---------------------~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (346)
.++ ...+++++.++|||||.+++..... ..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~-----------------------------~~ 145 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL-----------------------------NG 145 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc-----------------------------CC
Confidence 542 3468999999999999999886432 12
Q ss_pred HHHHHHHHHHCCCcEEEEec
Q 019123 299 PEELVLILQRASIDVKEMAG 318 (346)
Q Consensus 299 ~~~~~~ll~~aGF~~v~~~~ 318 (346)
..++..+++++||....+..
T Consensus 146 ~~~~~~~l~~~gf~~~~~~~ 165 (179)
T TIGR00537 146 EPDTFDKLDERGFRYEIVAE 165 (179)
T ss_pred hHHHHHHHHhCCCeEEEEEE
Confidence 46888899999999876543
No 60
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.63 E-value=3.5e-15 Score=129.67 Aligned_cols=107 Identities=16% Similarity=0.154 Sum_probs=89.3
Q ss_pred CCCeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCc-cccc--ccCCceeEEEec
Q 019123 160 EGLNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTA-EKLV--EEQRKFDAVIAS 234 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~-~~l~--~~~~~fDlv~~~ 234 (346)
++.+|||||||+|.++..++.. +.+|+|+|+|+.|++.+++++...++ .++.++++|+ +.++ +++++||+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 5679999999999999999876 45899999999999999998877666 6799999999 7776 567899999987
Q ss_pred chhcccC--------CHHHHHHHHHHhcccCceEEEEecCc
Q 019123 235 EVIEHVA--------DPAEFCKSLSALTVSEGATVISTINR 267 (346)
Q Consensus 235 ~~l~~~~--------~~~~~l~~~~r~LkpgG~~~~~~~~~ 267 (346)
+...+.. ....++++++++|||||.|++...+.
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~ 159 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE 159 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH
Confidence 6543221 14679999999999999999987543
No 61
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.62 E-value=3.6e-14 Score=124.38 Aligned_cols=164 Identities=16% Similarity=0.168 Sum_probs=117.4
Q ss_pred CCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccC-----------CCCCceEEEEcCccccccc-CCc
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLD-----------PETSTIEYCCTTAEKLVEE-QRK 227 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~-----------~~~~~v~~~~~d~~~l~~~-~~~ 227 (346)
++.+|||+|||.|..+..|+++|++|+|+|+|+.+++.+....... -...++.+.++|+.++... ...
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~ 116 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLAD 116 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCC
Confidence 5679999999999999999999999999999999999864321110 0135789999999888542 358
Q ss_pred eeEEEecchhcccCC--HHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHH
Q 019123 228 FDAVIASEVIEHVAD--PAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLI 305 (346)
Q Consensus 228 fDlv~~~~~l~~~~~--~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (346)
||+|+-..+++|++. ...+++.+.++|||||.+++..+...... ..+ . ...++.+++.++
T Consensus 117 fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~---------------~~g-P--p~~~~~~el~~~ 178 (218)
T PRK13255 117 VDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEE---------------LAG-P--PFSVSDEEVEAL 178 (218)
T ss_pred eeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCcc---------------CCC-C--CCCCCHHHHHHH
Confidence 999999988888864 35799999999999997665443321100 011 1 136899999999
Q ss_pred HHHCCCcEEEEeccc--c-CCCCCceeeccCCceeEEEEe
Q 019123 306 LQRASIDVKEMAGFV--Y-NPLTGRWSLSDDISVNFIAFG 342 (346)
Q Consensus 306 l~~aGF~~v~~~~~~--~-~~~~~~~~~~~~~~~~~l~~~ 342 (346)
+.. +|++..+.... . .|.-.+|+++.-....|+...
T Consensus 179 ~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (218)
T PRK13255 179 YAG-CFEIELLERQDVLEDNPKFVKKGVSRLNEAVYLLER 217 (218)
T ss_pred hcC-CceEEEeeeccccccCchhhhcCcchhheEEEEEEe
Confidence 953 37776655432 2 244466788777777777654
No 62
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.62 E-value=5e-15 Score=145.30 Aligned_cols=140 Identities=13% Similarity=0.223 Sum_probs=108.2
Q ss_pred CCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccc--ccccCCceeEEEecch
Q 019123 159 FEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEK--LVEEQRKFDAVIASEV 236 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~--l~~~~~~fDlv~~~~~ 236 (346)
.++.+|||||||+|.++..++..+.+|+|+|+++.|++.++.... ...++.++++|+.. +++++++||+|++..+
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~---~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~ 112 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESING---HYKNVKFMCADVTSPDLNISDGSVDLIFSNWL 112 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhc---cCCceEEEEecccccccCCCCCCEEEEehhhh
Confidence 356799999999999999999988899999999999998765332 12578999999863 5567789999999999
Q ss_pred hcccCC--HHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEE
Q 019123 237 IEHVAD--PAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVK 314 (346)
Q Consensus 237 l~~~~~--~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v 314 (346)
++|+++ ...++++++++|||||++++.+...... ..+.. ...-..+.....+..++.++||...
T Consensus 113 l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~-------------~~~~~-~~~~~~~~~~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 113 LMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQS-------------GDSKR-KNNPTHYREPRFYTKVFKECHTRDE 178 (475)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCC-------------Ccccc-cCCCCeecChHHHHHHHHHheeccC
Confidence 999987 4689999999999999999987532110 00000 0011234457899999999999887
Q ss_pred E
Q 019123 315 E 315 (346)
Q Consensus 315 ~ 315 (346)
.
T Consensus 179 ~ 179 (475)
T PLN02336 179 D 179 (475)
T ss_pred C
Confidence 4
No 63
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.61 E-value=2.7e-14 Score=124.10 Aligned_cols=98 Identities=16% Similarity=0.195 Sum_probs=83.3
Q ss_pred CCCeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchh
Q 019123 160 EGLNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVI 237 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l 237 (346)
++.+|||||||+|.++..++.. +.+++|+|+|+.|++.|+++. .++.+.++|+.+ ++++++||+|++..++
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~-~~~~~sfD~V~~~~vL 115 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFD-PFKDNFFDLVLTKGVL 115 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccC-CCCCCCEEEEEECChh
Confidence 5678999999999999999886 579999999999999998865 346788889887 7778899999999999
Q ss_pred cccC--CHHHHHHHHHHhcccCceEEEEecC
Q 019123 238 EHVA--DPAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 238 ~~~~--~~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
+|++ +...+++++++++ ++.+++.++.
T Consensus 116 ~hl~p~~~~~~l~el~r~~--~~~v~i~e~~ 144 (204)
T TIGR03587 116 IHINPDNLPTAYRELYRCS--NRYILIAEYY 144 (204)
T ss_pred hhCCHHHHHHHHHHHHhhc--CcEEEEEEee
Confidence 9995 2467899999987 5677777753
No 64
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.61 E-value=3.9e-14 Score=122.81 Aligned_cols=155 Identities=20% Similarity=0.204 Sum_probs=113.4
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHc---CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-ccCCceeEEE
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARM---GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-EEQRKFDAVI 232 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-~~~~~fDlv~ 232 (346)
...++.+|||+|||+|.++..++.. +.+|+++|+++.|++.+++++...++..++.++.+|+.+.. ...+.||+|+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~ 116 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIF 116 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEE
Confidence 5567889999999999999988764 35899999999999999999888775578999999987643 2346899999
Q ss_pred ecchhcccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCc
Q 019123 233 ASEVIEHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASID 312 (346)
Q Consensus 233 ~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~ 312 (346)
+.. ...++..+++.+.++|||||.+++..... .+..++...+++.||.
T Consensus 117 ~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~~~-----------------------------~~~~~~~~~l~~~g~~ 164 (198)
T PRK00377 117 IGG---GSEKLKEIISASWEIIKKGGRIVIDAILL-----------------------------ETVNNALSALENIGFN 164 (198)
T ss_pred ECC---CcccHHHHHHHHHHHcCCCcEEEEEeecH-----------------------------HHHHHHHHHHHHcCCC
Confidence 864 33567899999999999999998754321 1235777788999995
Q ss_pred EEEEeccc--cCCCCCceeeccCCceeEEEEeee
Q 019123 313 VKEMAGFV--YNPLTGRWSLSDDISVNFIAFGTK 344 (346)
Q Consensus 313 ~v~~~~~~--~~~~~~~~~~~~~~~~~~l~~~rk 344 (346)
...++-.. ..+..+...+ ....++|+..++|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~-~~~npv~~~~~~~ 197 (198)
T PRK00377 165 LEITEVIIAKGMKTKVGTAM-MTRNPIFIISGEK 197 (198)
T ss_pred eEEEEEehhhcccccCCcEe-ecCCCEEEEEEec
Confidence 43222211 2223332233 3347788888876
No 65
>PRK04266 fibrillarin; Provisional
Probab=99.60 E-value=5.8e-14 Score=123.61 Aligned_cols=134 Identities=14% Similarity=0.165 Sum_probs=95.8
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHcC--CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccc----cccCCceeE
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARMG--ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKL----VEEQRKFDA 230 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l----~~~~~~fDl 230 (346)
+..++.+|||+|||+|.++..+++.. .+|+++|+++.|++.+.+++... .|+.++.+|+... +. ..+||+
T Consensus 69 ~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l-~~~~D~ 144 (226)
T PRK04266 69 PIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHV-VEKVDV 144 (226)
T ss_pred CCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhc-cccCCE
Confidence 56678899999999999999999873 48999999999999887766543 5788999998652 12 346999
Q ss_pred EEecchhcccCCH---HHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHH
Q 019123 231 VIASEVIEHVADP---AEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQ 307 (346)
Q Consensus 231 v~~~~~l~~~~~~---~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 307 (346)
|++. +.++ ..++++++++|||||.|++...-... .+.. .. .+.+ ++..++++
T Consensus 145 i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~--------------d~~~---~~-~~~~--~~~~~~l~ 199 (226)
T PRK04266 145 IYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSI--------------DVTK---DP-KEIF--KEEIRKLE 199 (226)
T ss_pred EEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEecccc--------------cCcC---CH-HHHH--HHHHHHHH
Confidence 9864 2333 34689999999999999995321100 0000 00 0111 34559999
Q ss_pred HCCCcEEEEecc
Q 019123 308 RASIDVKEMAGF 319 (346)
Q Consensus 308 ~aGF~~v~~~~~ 319 (346)
++||++++...+
T Consensus 200 ~aGF~~i~~~~l 211 (226)
T PRK04266 200 EGGFEILEVVDL 211 (226)
T ss_pred HcCCeEEEEEcC
Confidence 999999986653
No 66
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.58 E-value=9.7e-15 Score=131.95 Aligned_cols=107 Identities=15% Similarity=0.178 Sum_probs=86.7
Q ss_pred CCCCeEEEECCCCch----hHHHHHHc-------CCeEEEEcCChHHHHHHHHhhcc----CC-----------------
Q 019123 159 FEGLNIVDVGCGGGI----LSEPLARM-------GATVTGIDAVEKNIKIARLHADL----DP----------------- 206 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~----~~~~l~~~-------~~~v~giD~s~~~l~~a~~~~~~----~~----------------- 206 (346)
.++.+|||+|||+|. +++.+++. +.+|+|+|+|+.|++.|++.+-. .+
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345799999999996 56666654 35899999999999999986421 00
Q ss_pred -----CCCceEEEEcCcccccccCCceeEEEecchhcccCCH--HHHHHHHHHhcccCceEEEEec
Q 019123 207 -----ETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEHVADP--AEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 207 -----~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~~~~~--~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
+..+|.|.+.|+.+.+.+.++||+|+|.++++|++++ ..++++++++|+|||+|++..-
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 1136899999999887778899999999999999754 4799999999999999998743
No 67
>PRK14968 putative methyltransferase; Provisional
Probab=99.58 E-value=4.9e-14 Score=120.92 Aligned_cols=129 Identities=18% Similarity=0.260 Sum_probs=100.6
Q ss_pred CCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCc-eEEEEcCcccccccCCceeEEEecchh
Q 019123 159 FEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETST-IEYCCTTAEKLVEEQRKFDAVIASEVI 237 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~-v~~~~~d~~~l~~~~~~fDlv~~~~~l 237 (346)
.++.+|||+|||+|.++..++..+.+|+++|+++.+++.+++++...++..+ +.++.+|+.+. ..+++||+|+++..+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRGDKFDVILFNPPY 100 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccccCceEEEECCCc
Confidence 3667999999999999999999988999999999999999998877665322 88888887653 345589999986543
Q ss_pred ccc---------------------CCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccC
Q 019123 238 EHV---------------------ADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSF 296 (346)
Q Consensus 238 ~~~---------------------~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (346)
... .....+++++.++|||||.+++...+ +
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~-----------------------------~ 151 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS-----------------------------L 151 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc-----------------------------c
Confidence 221 11456899999999999998887532 1
Q ss_pred CCHHHHHHHHHHCCCcEEEEe
Q 019123 297 LTPEELVLILQRASIDVKEMA 317 (346)
Q Consensus 297 ~~~~~~~~ll~~aGF~~v~~~ 317 (346)
...+++..+++++||+++...
T Consensus 152 ~~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 152 TGEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred CCHHHHHHHHHHCCCeeeeee
Confidence 234678899999999987543
No 68
>PRK06922 hypothetical protein; Provisional
Probab=99.57 E-value=1.4e-14 Score=142.21 Aligned_cols=105 Identities=21% Similarity=0.271 Sum_probs=89.8
Q ss_pred CCCCeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc--ccCCceeEEEec
Q 019123 159 FEGLNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV--EEQRKFDAVIAS 234 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~fDlv~~~ 234 (346)
.++.+|||||||+|..+..++.. +.+|+|+|+|+.|++.++++....+ .++.++++|+.+++ +++++||+|+++
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvVVsn 494 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTIVYS 494 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEEEEc
Confidence 36789999999999999888765 5699999999999999998765443 46888999998887 678899999999
Q ss_pred chhcccC-------------CHHHHHHHHHHhcccCceEEEEec
Q 019123 235 EVIEHVA-------------DPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 235 ~~l~~~~-------------~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
.+++++. ++..++++++++|||||.+++.+.
T Consensus 495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9888652 457899999999999999999874
No 69
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.56 E-value=2.2e-14 Score=130.59 Aligned_cols=97 Identities=21% Similarity=0.370 Sum_probs=82.4
Q ss_pred CCCeEEEECCCCchhHHHHHHc-----CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEec
Q 019123 160 EGLNIVDVGCGGGILSEPLARM-----GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIAS 234 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~-----~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~ 234 (346)
.+.+|||+|||+|.++..++.. +..|+|+|+|+.|++.|+++. +++.|.++|+.++|+++++||+|++.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~~ 158 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIRI 158 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEEe
Confidence 4578999999999999998765 237999999999999998764 46889999999999888999999987
Q ss_pred chhcccCCHHHHHHHHHHhcccCceEEEEecCcch
Q 019123 235 EVIEHVADPAEFCKSLSALTVSEGATVISTINRSM 269 (346)
Q Consensus 235 ~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~ 269 (346)
+. +..+++++|+|||||.|++..+....
T Consensus 159 ~~-------~~~~~e~~rvLkpgG~li~~~p~~~~ 186 (272)
T PRK11088 159 YA-------PCKAEELARVVKPGGIVITVTPGPRH 186 (272)
T ss_pred cC-------CCCHHHHHhhccCCCEEEEEeCCCcc
Confidence 54 23468999999999999999887654
No 70
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.56 E-value=6.9e-14 Score=121.90 Aligned_cols=102 Identities=21% Similarity=0.277 Sum_probs=85.7
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHc---CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEe
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARM---GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIA 233 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~ 233 (346)
.+.++.+|||||||+|..+..+++. +.+|+++|+++++++.+++++...++..+++++.+|+.+......+||+|++
T Consensus 69 ~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~ 148 (205)
T PRK13944 69 EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIV 148 (205)
T ss_pred CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEE
Confidence 3456789999999999999888875 3589999999999999999988777656799999999775544578999999
Q ss_pred cchhcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 234 SEVIEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 234 ~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
..++.+++ +++.++|+|||.|++..
T Consensus 149 ~~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 149 TAAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred ccCcchhh------HHHHHhcCcCcEEEEEE
Confidence 98877654 46889999999998764
No 71
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.56 E-value=8.2e-14 Score=111.03 Aligned_cols=104 Identities=18% Similarity=0.145 Sum_probs=85.1
Q ss_pred CCCCCeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccc-cccCCceeEEEec
Q 019123 158 PFEGLNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKL-VEEQRKFDAVIAS 234 (346)
Q Consensus 158 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l-~~~~~~fDlv~~~ 234 (346)
..++.+|||+|||+|.++..++.. +.+|+++|+++.+++.+++++...+. .++.++..|+... +....+||+|++.
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~v~~~ 95 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV-SNIVIVEGDAPEALEDSLPEPDRVFIG 95 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC-CceEEEeccccccChhhcCCCCEEEEC
Confidence 345679999999999999999986 35899999999999999998877655 4688988887652 2334689999997
Q ss_pred chhcccCCHHHHHHHHHHhcccCceEEEEec
Q 019123 235 EVIEHVADPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 235 ~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
.... ....++++++++|||||.|++...
T Consensus 96 ~~~~---~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 96 GSGG---LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred Ccch---hHHHHHHHHHHHcCCCCEEEEEec
Confidence 6543 346899999999999999998754
No 72
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.55 E-value=8.6e-14 Score=120.24 Aligned_cols=108 Identities=17% Similarity=0.192 Sum_probs=88.6
Q ss_pred CCCeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc---ccCCceeEEEec
Q 019123 160 EGLNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV---EEQRKFDAVIAS 234 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~---~~~~~fDlv~~~ 234 (346)
...+|||||||+|.++..++.. ...|+|+|+++.|++.+++++...++ .++.++++|+.+++ ++++++|.|++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l-~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL-KNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC-CCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4569999999999999999987 45899999999999999998877776 58999999998764 346689999987
Q ss_pred chhcccCC--------HHHHHHHHHHhcccCceEEEEecCcc
Q 019123 235 EVIEHVAD--------PAEFCKSLSALTVSEGATVISTINRS 268 (346)
Q Consensus 235 ~~l~~~~~--------~~~~l~~~~r~LkpgG~~~~~~~~~~ 268 (346)
+...+... .+.++++++++|||||.|++.+.+..
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~ 136 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP 136 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence 64433221 15799999999999999999876543
No 73
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.55 E-value=9.5e-14 Score=114.01 Aligned_cols=127 Identities=24% Similarity=0.324 Sum_probs=106.7
Q ss_pred CeEEEECCCCchhHHHHHHcCC--eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhcc
Q 019123 162 LNIVDVGCGGGILSEPLARMGA--TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEH 239 (346)
Q Consensus 162 ~~vLDiG~G~G~~~~~l~~~~~--~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~ 239 (346)
.+|||+|||.|.+.+.|++.|. ..+|+|.|+.+++.|+..+...+.+..|+|.+.|+.+..+..+.||+|+--..+..
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 3999999999999999999976 59999999999999999999988877799999999887666788999987666554
Q ss_pred cC---C-----HHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCC
Q 019123 240 VA---D-----PAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASI 311 (346)
Q Consensus 240 ~~---~-----~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF 311 (346)
+. + +..++..+.+.|+|||+|+|...| ++..|+.+.++.-||
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN------------------------------~T~dELv~~f~~~~f 198 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN------------------------------FTKDELVEEFENFNF 198 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEecC------------------------------ccHHHHHHHHhcCCe
Confidence 42 1 234788899999999999998654 467899999999999
Q ss_pred cEEEEec
Q 019123 312 DVKEMAG 318 (346)
Q Consensus 312 ~~v~~~~ 318 (346)
++...-.
T Consensus 199 ~~~~tvp 205 (227)
T KOG1271|consen 199 EYLSTVP 205 (227)
T ss_pred EEEEeec
Confidence 8875433
No 74
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.55 E-value=1.7e-13 Score=126.37 Aligned_cols=106 Identities=15% Similarity=0.176 Sum_probs=81.6
Q ss_pred CCCeEEEECCCCchhHHHHHHc---CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccc-cccCC----ceeEE
Q 019123 160 EGLNIVDVGCGGGILSEPLARM---GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKL-VEEQR----KFDAV 231 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l-~~~~~----~fDlv 231 (346)
++.+|||+|||+|..+..+++. +.+|+++|+|++||+.+++++.......++.++++|+.+. +.+.. ...++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 5678999999999999999887 5799999999999999998876533224577889998763 33222 23445
Q ss_pred EecchhcccCC--HHHHHHHHHHhcccCceEEEEec
Q 019123 232 IASEVIEHVAD--PAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 232 ~~~~~l~~~~~--~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
++...+++++. ...+|++++++|+|||.|++...
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 55567888764 34689999999999999998653
No 75
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.54 E-value=3.6e-14 Score=119.38 Aligned_cols=130 Identities=21% Similarity=0.280 Sum_probs=96.9
Q ss_pred CCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhcc
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEH 239 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~ 239 (346)
.-.++||+|||.|.++..|+.+.-+++++|+++.+++.++++.... ++|.|.+.|+.+.. |.+.||+|+++.++++
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~-P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFW-PEGRFDLIVLSEVLYY 118 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT----SS-EEEEEEES-GGG
T ss_pred ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCC-CCCCeeEEEEehHhHc
Confidence 4468999999999999999999879999999999999999998764 58999999997764 6789999999999999
Q ss_pred cCCH---HHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcE
Q 019123 240 VADP---AEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDV 313 (346)
Q Consensus 240 ~~~~---~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~ 313 (346)
+.+. ..++..+...|+|||.+++..+.... -..| .+.+..+.+..+|.+.=-++
T Consensus 119 L~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~------------c~~w--------gh~~ga~tv~~~~~~~~~~~ 175 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAPGGHLVFGHARDAN------------CRRW--------GHAAGAETVLEMLQEHLTEV 175 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHH------------HHHT--------T-S--HHHHHHHHHHHSEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCc------------cccc--------CcccchHHHHHHHHHHhhhe
Confidence 9864 46899999999999999998874211 1112 23567788999998773333
No 76
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.53 E-value=1.4e-13 Score=123.66 Aligned_cols=119 Identities=25% Similarity=0.388 Sum_probs=92.2
Q ss_pred CCCCeEEEECCCCchhHHHHHHcCC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchh
Q 019123 159 FEGLNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVI 237 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l 237 (346)
.++.+|||+|||+|.++..++..|. +|+|+|+++.+++.+++++..+++..++.+..++ .+||+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~--------~~fD~Vvani~~ 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD--------LKADVIVANILA 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC--------CCcCEEEEcCcH
Confidence 3678999999999999998888877 5999999999999999998877653334333222 279999986533
Q ss_pred cccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEEe
Q 019123 238 EHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMA 317 (346)
Q Consensus 238 ~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (346)
+ ....+++++.++|||||.+++..+.. ...+++...+++.||+++...
T Consensus 190 ~---~~~~l~~~~~~~LkpgG~lilsgi~~-----------------------------~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 190 N---PLLELAPDLARLLKPGGRLILSGILE-----------------------------EQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred H---HHHHHHHHHHHhcCCCcEEEEEECcH-----------------------------hhHHHHHHHHHHCCCEEEEEE
Confidence 2 24578899999999999999986532 123678889999999987643
No 77
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.52 E-value=5.4e-14 Score=111.21 Aligned_cols=105 Identities=25% Similarity=0.331 Sum_probs=88.7
Q ss_pred CCeEEEECCCCchhHHHHHHcC-CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc--ccCCceeEEEecchh
Q 019123 161 GLNIVDVGCGGGILSEPLARMG-ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV--EEQRKFDAVIASEVI 237 (346)
Q Consensus 161 ~~~vLDiG~G~G~~~~~l~~~~-~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~fDlv~~~~~l 237 (346)
+.+|||+|||+|.++..+++.+ .+++|+|+++..++.++.++...++..+++++++|+.+.. .++++||+|+++--.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 3589999999999999999998 8999999999999999999998887788999999998876 578899999997655
Q ss_pred cccC--------CHHHHHHHHHHhcccCceEEEEec
Q 019123 238 EHVA--------DPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 238 ~~~~--------~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
.... ....+++++.++|||||.+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 4321 135789999999999999998764
No 78
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.51 E-value=3.4e-13 Score=126.04 Aligned_cols=109 Identities=23% Similarity=0.164 Sum_probs=90.3
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecch
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEV 236 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~ 236 (346)
...++.+|||+|||+|.++..++..+..++|+|+++.|+..++.++...++. ++.++.+|+.+++.++++||+|++.--
T Consensus 179 ~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~-~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 179 RVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIE-DFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCC-CCeEEecchhcCCcccCCCCEEEECCC
Confidence 3457789999999999999988888899999999999999999998877764 488999999998877789999999632
Q ss_pred h--c----c--cCC-HHHHHHHHHHhcccCceEEEEecC
Q 019123 237 I--E----H--VAD-PAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 237 l--~----~--~~~-~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
. . . ..+ ...++++++++|||||.+++..++
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 1 1 0 111 468999999999999999888653
No 79
>PLN03075 nicotianamine synthase; Provisional
Probab=99.51 E-value=1.5e-13 Score=124.16 Aligned_cols=104 Identities=13% Similarity=0.153 Sum_probs=87.2
Q ss_pred CCCeEEEECCCCchh-HHHHHH-c--CCeEEEEcCChHHHHHHHHhhcc-CCCCCceEEEEcCcccccccCCceeEEEec
Q 019123 160 EGLNIVDVGCGGGIL-SEPLAR-M--GATVTGIDAVEKNIKIARLHADL-DPETSTIEYCCTTAEKLVEEQRKFDAVIAS 234 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~-~~~l~~-~--~~~v~giD~s~~~l~~a~~~~~~-~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~ 234 (346)
++.+|||||||.|.+ +..++. + +.+++|+|+++++++.|++.+.. .++..++.|..+|+.+.....+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 778999999997744 443432 3 45899999999999999999854 677778999999998764335689999999
Q ss_pred chhccc--CCHHHHHHHHHHhcccCceEEEEe
Q 019123 235 EVIEHV--ADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 235 ~~l~~~--~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
+++++ .++.++++.++++|+|||.+++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 88888 688999999999999999999986
No 80
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.51 E-value=3.3e-13 Score=123.69 Aligned_cols=103 Identities=30% Similarity=0.428 Sum_probs=84.6
Q ss_pred CCCCeEEEECCCCchhHHHHHHcCC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchh
Q 019123 159 FEGLNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVI 237 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l 237 (346)
.++.+|||+|||+|.++..++..|. +|+++|+++.|++.+++++..+++..++.+...+... ..+++||+|+++...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~~~~~fDlVvan~~~ 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--PIEGKADVIVANILA 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--ccCCCceEEEEecCH
Confidence 3568999999999999999988876 8999999999999999999887776667777666332 235689999997654
Q ss_pred cccCCHHHHHHHHHHhcccCceEEEEecC
Q 019123 238 EHVADPAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 238 ~~~~~~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
. ....++.++.++|||||.|++..+.
T Consensus 236 ~---~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 236 E---VIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred H---HHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 3 3457899999999999999998754
No 81
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.50 E-value=7.6e-13 Score=114.56 Aligned_cols=156 Identities=17% Similarity=0.088 Sum_probs=106.6
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccc-cccCCceeEEEe
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKL-VEEQRKFDAVIA 233 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l-~~~~~~fDlv~~ 233 (346)
...++.+|||+|||+|.++..++.. +.+|+++|+++.|++.+++++...++ .+++++.+|+.+. ......+|.|++
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~d~v~~ 115 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLAQLAPAPDRVCI 115 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHhhCCCCCCEEEE
Confidence 3456789999999999999998765 46999999999999999999877766 5799999998652 221234577655
Q ss_pred cchhcccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcE
Q 019123 234 SEVIEHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDV 313 (346)
Q Consensus 234 ~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~ 313 (346)
.. ..+...++++++++|+|||.|++...+.... ....+....++..|+++
T Consensus 116 ~~----~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~ 165 (196)
T PRK07402 116 EG----GRPIKEILQAVWQYLKPGGRLVATASSLEGL--------------------------YAISEGLAQLQARNIEV 165 (196)
T ss_pred EC----CcCHHHHHHHHHHhcCCCeEEEEEeecHHHH--------------------------HHHHHHHHhcCCCCceE
Confidence 32 2356789999999999999999987653211 00011222233456777
Q ss_pred EEEeccccCCCCCceeeccCCceeEEEEeee
Q 019123 314 KEMAGFVYNPLTGRWSLSDDISVNFIAFGTK 344 (346)
Q Consensus 314 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~rk 344 (346)
++...-...+..+ .+.-....++|+....|
T Consensus 166 ~~~~~~~~~~~~~-~~~~~~~~pv~~~~~~~ 195 (196)
T PRK07402 166 VQAAVNRLETRGF-SQVFAAVDPIFILSGEK 195 (196)
T ss_pred EEEEhhhcccccC-cCeeecCCCEEEEEEEe
Confidence 7654322333333 23335677788887765
No 82
>PTZ00146 fibrillarin; Provisional
Probab=99.50 E-value=7.5e-13 Score=119.24 Aligned_cols=155 Identities=14% Similarity=0.112 Sum_probs=101.6
Q ss_pred cccChhHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHHHHHcC---CeEEEEcCChHHHHHHHHhhccCCC
Q 019123 131 HALNPTRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARMG---ATVTGIDAVEKNIKIARLHADLDPE 207 (346)
Q Consensus 131 ~~~n~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~giD~s~~~l~~a~~~~~~~~~ 207 (346)
...|+.|..+..- |..-+.. ....++.+|||+|||+|.++..+++.. ..|+++|+++.|++.....+...
T Consensus 108 R~w~p~rSKlaa~-i~~g~~~----l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-- 180 (293)
T PTZ00146 108 RVWNPFRSKLAAA-IIGGVAN----IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-- 180 (293)
T ss_pred eeeCCcccHHHHH-HHCCcce----eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--
Confidence 4556665554432 3222221 355688899999999999999999873 47999999997664444433222
Q ss_pred CCceEEEEcCcccc---cccCCceeEEEecchhcccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhh
Q 019123 208 TSTIEYCCTTAEKL---VEEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILH 284 (346)
Q Consensus 208 ~~~v~~~~~d~~~l---~~~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (346)
.|+.++..|+... .....+||+|++... ...+...++.+++++|||||.|+|.......
T Consensus 181 -~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ika~~i--------------- 242 (293)
T PTZ00146 181 -PNIVPIIEDARYPQKYRMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFIISIKANCI--------------- 242 (293)
T ss_pred -CCCEEEECCccChhhhhcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEEEecccc---------------
Confidence 4788999998642 123457999998764 2223345667899999999999995321110
Q ss_pred hcCCCccccccCCCHHHH----HHHHHHCCCcEEEEecc
Q 019123 285 WLPKGTHQWSSFLTPEEL----VLILQRASIDVKEMAGF 319 (346)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~----~~ll~~aGF~~v~~~~~ 319 (346)
..-+++++. .++|+++||++++...+
T Consensus 243 ---------d~g~~pe~~f~~ev~~L~~~GF~~~e~v~L 272 (293)
T PTZ00146 243 ---------DSTAKPEVVFASEVQKLKKEGLKPKEQLTL 272 (293)
T ss_pred ---------ccCCCHHHHHHHHHHHHHHcCCceEEEEec
Confidence 011223332 37899999998875543
No 83
>PRK14967 putative methyltransferase; Provisional
Probab=99.50 E-value=1.1e-12 Score=116.01 Aligned_cols=106 Identities=24% Similarity=0.318 Sum_probs=83.7
Q ss_pred CCCCCeEEEECCCCchhHHHHHHcCC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecch
Q 019123 158 PFEGLNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEV 236 (346)
Q Consensus 158 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~ 236 (346)
..++.+|||+|||+|.++..++..+. +|+++|+++.+++.+++++...+. ++.++.+|+.+. .++++||+|+++-.
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~-~~~~~fD~Vi~npP 110 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA-VEFRPFDVVVSNPP 110 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-ccCCCeeEEEECCC
Confidence 34668999999999999999988776 999999999999999998876653 578888888663 35678999999742
Q ss_pred hcccC---------------------CHHHHHHHHHHhcccCceEEEEecC
Q 019123 237 IEHVA---------------------DPAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 237 l~~~~---------------------~~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
..... ....+++++.++|||||.+++....
T Consensus 111 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 111 YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 21110 1356788999999999999986544
No 84
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.49 E-value=4.9e-13 Score=120.11 Aligned_cols=126 Identities=17% Similarity=0.186 Sum_probs=98.5
Q ss_pred CCCeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchh
Q 019123 160 EGLNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVI 237 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l 237 (346)
.+.+|||+|||+|.++..++.. +.+++|+|+++.+++.+++++...++ .++.++++|+.+ +.++++||+|+++...
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~-~~~~~~fD~Vi~npPy 164 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL-DNVTFLQSDWFE-PLPGGKFDLIVSNPPY 164 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEECchhc-cCcCCceeEEEECCCC
Confidence 3468999999999999999986 55999999999999999999887776 479999999876 3456789999985322
Q ss_pred c------ccC--------------------CHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCcc
Q 019123 238 E------HVA--------------------DPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTH 291 (346)
Q Consensus 238 ~------~~~--------------------~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (346)
. .+. ....+++++.++|+|||.+++...
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~-------------------------- 218 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG-------------------------- 218 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC--------------------------
Confidence 1 110 123678999999999999988531
Q ss_pred ccccCCCHHHHHHHHHHCCCcEEEEe
Q 019123 292 QWSSFLTPEELVLILQRASIDVKEMA 317 (346)
Q Consensus 292 ~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (346)
+...+++.++++++||+.+.+.
T Consensus 219 ----~~~~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 219 ----YDQGEAVRALFEAAGFADVETR 240 (251)
T ss_pred ----ccHHHHHHHHHHhCCCCceEEE
Confidence 1223678899999999887653
No 85
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.49 E-value=1.8e-13 Score=117.18 Aligned_cols=189 Identities=16% Similarity=0.172 Sum_probs=116.1
Q ss_pred HHHHHHHhhhCcCCCCC-----cccccChhHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHHHHHc-CCeE
Q 019123 112 KFSAIADTWWDAEGPYK-----PLHALNPTRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARM-GATV 185 (346)
Q Consensus 112 ~f~~~a~~y~~~~~~~~-----~~~~~n~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~v 185 (346)
.|...+..||+...+.- -+..+...-...-+.++.++..... .......+.||+|+|.|+++..++-. .-+|
T Consensus 4 ~~y~~a~~YW~~v~atvdGMLGG~~~is~~Di~gS~~FL~~l~~~~~--~~~~~~~~alDcGAGIGRVTk~lLl~~f~~V 81 (218)
T PF05891_consen 4 IWYEKAKEYWENVPATVDGMLGGFGHISRIDIQGSRNFLKKLKRGRK--PGKPKFNRALDCGAGIGRVTKGLLLPVFDEV 81 (218)
T ss_dssp HHHHHHHHHHHTS-SSHHHHTTT-GGGHHHHHHHHHHHHHCCCT-----------SEEEEET-TTTHHHHHTCCCC-SEE
T ss_pred cHHHHHHHHHcCCCCCccccccCCCCCChHHHHHHHHHHHHHHhhcc--cCCCCcceEEecccccchhHHHHHHHhcCEe
Confidence 47778899998642221 1112222223333344443322110 12234579999999999999987655 4489
Q ss_pred EEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhcccCCH--HHHHHHHHHhcccCceEEEE
Q 019123 186 TGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEHVADP--AEFCKSLSALTVSEGATVIS 263 (346)
Q Consensus 186 ~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~~~~~--~~~l~~~~r~LkpgG~~~~~ 263 (346)
..+|..+..++.|++.+.... ..-.++++..++++..+.++||+|++-+++.|++|. .++|+.+...|+|+|++++-
T Consensus 82 DlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 82 DLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp EEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 999999999999998765521 144788899999887666899999999999999975 48999999999999999997
Q ss_pred ecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEEe
Q 019123 264 TINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMA 317 (346)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (346)
+-..... ...+.....+ -..+.+.+.+++++||++++..+
T Consensus 161 EN~~~~~------------~~~~D~~DsS--vTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 161 ENVSSSG------------FDEFDEEDSS--VTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp EEEESSS------------EEEEETTTTE--EEEEHHHHHHHHHHCT-EEEEEE
T ss_pred ecCCCCC------------CcccCCccCe--eecCHHHHHHHHHHcCCEEEEec
Confidence 6432110 0011111112 23467899999999999998744
No 86
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.49 E-value=2.6e-12 Score=107.36 Aligned_cols=154 Identities=18% Similarity=0.159 Sum_probs=119.8
Q ss_pred CCCCCCCeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEe
Q 019123 156 ARPFEGLNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIA 233 (346)
Q Consensus 156 ~~~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~ 233 (346)
+.+.++.+++|||||+|.++..++.. ..+|+++|-++++++..++++...++ +|+.++.+++.+.-..-.++|.|++
T Consensus 30 L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~~~~~~daiFI 108 (187)
T COG2242 30 LRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALPDLPSPDAIFI 108 (187)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhcCCCCCCEEEE
Confidence 46778999999999999999999943 55999999999999999999999885 8999999998664322227999999
Q ss_pred cchhcccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCC-c
Q 019123 234 SEVIEHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASI-D 312 (346)
Q Consensus 234 ~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF-~ 312 (346)
... . +.+.+|+.+...|||||.+++.....+ +.....+.+++.|| +
T Consensus 109 GGg-~---~i~~ile~~~~~l~~ggrlV~naitlE-----------------------------~~~~a~~~~~~~g~~e 155 (187)
T COG2242 109 GGG-G---NIEEILEAAWERLKPGGRLVANAITLE-----------------------------TLAKALEALEQLGGRE 155 (187)
T ss_pred CCC-C---CHHHHHHHHHHHcCcCCeEEEEeecHH-----------------------------HHHHHHHHHHHcCCce
Confidence 887 3 677999999999999999999875432 22455668889999 6
Q ss_pred EEEEeccccCCCCCceeeccCCceeEEEEeee
Q 019123 313 VKEMAGFVYNPLTGRWSLSDDISVNFIAFGTK 344 (346)
Q Consensus 313 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~rk 344 (346)
++++.-. .....+.|.......++|+....|
T Consensus 156 i~~v~is-~~~~lg~~~~~~~~nPv~i~~g~k 186 (187)
T COG2242 156 IVQVQIS-RGKPLGGGTMFRPVNPVFIISGVK 186 (187)
T ss_pred EEEEEee-cceeccCeeEeecCCCEEEEEEec
Confidence 6665433 333334455556667778887766
No 87
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.49 E-value=2.7e-13 Score=118.73 Aligned_cols=101 Identities=18% Similarity=0.229 Sum_probs=84.1
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHc---CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEe
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARM---GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIA 233 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~ 233 (346)
...++.+|||||||+|.++..++.. +.+|+++|+++++++.+++++...++ .++.++++|+.....+.+.||+|++
T Consensus 73 ~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~~~~~fD~I~~ 151 (212)
T PRK13942 73 DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYEENAPYDRIYV 151 (212)
T ss_pred CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCcCCCcCEEEE
Confidence 4457889999999999999888876 25999999999999999999887776 6799999998876556678999999
Q ss_pred cchhcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 234 SEVIEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 234 ~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
...+.++ ...+.+.|||||.+++..
T Consensus 152 ~~~~~~~------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 152 TAAGPDI------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCCcccc------hHHHHHhhCCCcEEEEEE
Confidence 8766443 346677899999998864
No 88
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.48 E-value=3.2e-13 Score=114.15 Aligned_cols=105 Identities=21% Similarity=0.378 Sum_probs=85.9
Q ss_pred CCCeEEEECCCCchhHHHHHHcCC--eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchh
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGA--TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVI 237 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~--~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l 237 (346)
+..+|||+|||+|.++..++..+. +|+++|+++.+++.+++++..+++.. +.++..|..+.. ++++||+|+++--+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~-~~~~fD~Iv~NPP~ 108 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEAL-PDGKFDLIVSNPPF 108 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTC-CTTCEEEEEE---S
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccc-cccceeEEEEccch
Confidence 567999999999999999999865 59999999999999999999988744 999999986543 36899999998765
Q ss_pred cccCC-----HHHHHHHHHHhcccCceEEEEecC
Q 019123 238 EHVAD-----PAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 238 ~~~~~-----~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
+.-.+ ...+++++.++|||||.|++....
T Consensus 109 ~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 109 HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred hcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 54433 467899999999999999776543
No 89
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.48 E-value=9.8e-14 Score=118.00 Aligned_cols=145 Identities=18% Similarity=0.219 Sum_probs=108.0
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc--ccCCceeEEEec
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV--EEQRKFDAVIAS 234 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~fDlv~~~ 234 (346)
...+-.++||+|||||-.+..+.....+++|+|||..|++.+.++-.-. ...+.++..+- ..+..||+|+..
T Consensus 122 ~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD------~L~~Aea~~Fl~~~~~er~DLi~Aa 195 (287)
T COG4976 122 DLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYD------TLYVAEAVLFLEDLTQERFDLIVAA 195 (287)
T ss_pred cCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchH------HHHHHHHHHHhhhccCCcccchhhh
Confidence 3334579999999999999999888889999999999999998763221 12333433221 346789999999
Q ss_pred chhcccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEE
Q 019123 235 EVIEHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVK 314 (346)
Q Consensus 235 ~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v 314 (346)
.++.++.+.+.++--+...|+|||.|.++.-...... -+...| +.+.-.++.-+..+++..||+++
T Consensus 196 DVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~----------~f~l~p----s~RyAH~~~YVr~~l~~~Gl~~i 261 (287)
T COG4976 196 DVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDG----------GFVLGP----SQRYAHSESYVRALLAASGLEVI 261 (287)
T ss_pred hHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCC----------Ceecch----hhhhccchHHHHHHHHhcCceEE
Confidence 9999999999999999999999999999865433210 011111 11223466778999999999999
Q ss_pred EEecccc
Q 019123 315 EMAGFVY 321 (346)
Q Consensus 315 ~~~~~~~ 321 (346)
.++..+.
T Consensus 262 ~~~~tti 268 (287)
T COG4976 262 AIEDTTI 268 (287)
T ss_pred Eeecccc
Confidence 9887664
No 90
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.48 E-value=2.8e-13 Score=119.00 Aligned_cols=101 Identities=14% Similarity=0.158 Sum_probs=84.0
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHcCC---eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEe
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARMGA---TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIA 233 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~~~---~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~ 233 (346)
...++.+|||||||+|.++..++.... .|+++|+++.+++.+++++...++ .+++++++|+.+.......||+|++
T Consensus 74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~~~~fD~Ii~ 152 (215)
T TIGR00080 74 ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEPLAPYDRIYV 152 (215)
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcccCCCCEEEE
Confidence 345788999999999999999988743 599999999999999999988877 6899999999775444568999998
Q ss_pred cchhcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 234 SEVIEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 234 ~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
.....++ ...+.+.|||||.|++..
T Consensus 153 ~~~~~~~------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 153 TAAGPKI------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred cCCcccc------cHHHHHhcCcCcEEEEEE
Confidence 8765444 356788999999998864
No 91
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.46 E-value=1.6e-12 Score=121.86 Aligned_cols=153 Identities=10% Similarity=0.084 Sum_probs=106.7
Q ss_pred CCCeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccc--cccCCceeEEEecc
Q 019123 160 EGLNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKL--VEEQRKFDAVIASE 235 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l--~~~~~~fDlv~~~~ 235 (346)
.+..+||||||+|.++..++.. ...++|+|+++.|+..+.+++...++ .|+.++++|+..+ .++++++|.|++.+
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 4569999999999999999987 45899999999999999999888777 6899999999765 35789999999865
Q ss_pred hhcccCCH------HHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHC
Q 019123 236 VIEHVADP------AEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRA 309 (346)
Q Consensus 236 ~l~~~~~~------~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 309 (346)
..-+.... ..++++++|+|+|||.+.+.+-+.....+............. ..+......-..+++.-....
T Consensus 201 PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~---~~~~~~~~~i~TkyE~r~~~~ 277 (390)
T PRK14121 201 PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI---EIKKNAQLEVSSKYEDRWKKQ 277 (390)
T ss_pred CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee---ecccCCCCCCCCHHHHHHHHC
Confidence 33222111 589999999999999999988665433222211111000000 000001122335677778888
Q ss_pred CCcEEEE
Q 019123 310 SIDVKEM 316 (346)
Q Consensus 310 GF~~v~~ 316 (346)
|-.+-.+
T Consensus 278 G~~Iy~l 284 (390)
T PRK14121 278 NKDIYDL 284 (390)
T ss_pred CCCEEEE
Confidence 8877543
No 92
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.46 E-value=1.5e-13 Score=118.00 Aligned_cols=104 Identities=19% Similarity=0.236 Sum_probs=81.2
Q ss_pred CeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhcccC
Q 019123 162 LNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEHVA 241 (346)
Q Consensus 162 ~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~~~ 241 (346)
..++|||||+|.-++.++++.-+|+++|+|+.||+.+++.....-......+...+..+|.-.++++|+|+|..++|++
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF- 113 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF- 113 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh-
Confidence 3899999999988888888877999999999999999887654332222334444444444458999999999999888
Q ss_pred CHHHHHHHHHHhcccCc-eEEEEecC
Q 019123 242 DPAEFCKSLSALTVSEG-ATVISTIN 266 (346)
Q Consensus 242 ~~~~~l~~~~r~LkpgG-~~~~~~~~ 266 (346)
|.+.++++++|+||+.| .+.+-..+
T Consensus 114 dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 114 DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 78899999999998755 66665544
No 93
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.45 E-value=1.3e-12 Score=110.74 Aligned_cols=112 Identities=17% Similarity=0.278 Sum_probs=79.1
Q ss_pred CCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhcc
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEH 239 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~ 239 (346)
+...|.|+|||.+.++..+ ..+.+|+.+|+.. .+-.+..+|+..+|.+++++|++++...|..
T Consensus 72 ~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva----------------~n~~Vtacdia~vPL~~~svDv~VfcLSLMG 134 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVA----------------PNPRVTACDIANVPLEDESVDVAVFCLSLMG 134 (219)
T ss_dssp TTS-EEEES-TT-HHHHH---S---EEEEESS-----------------SSTTEEES-TTS-S--TT-EEEEEEES---S
T ss_pred CCEEEEECCCchHHHHHhc-ccCceEEEeeccC----------------CCCCEEEecCccCcCCCCceeEEEEEhhhhC
Confidence 4579999999999999765 3456899999965 2234788999999999999999999888754
Q ss_pred cCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEE
Q 019123 240 VADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEM 316 (346)
Q Consensus 240 ~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (346)
+|...+|+|++|+|||||.|.|.|.. .+|.+.++|.+.++..||++...
T Consensus 135 -Tn~~~fi~EA~RvLK~~G~L~IAEV~---------------------------SRf~~~~~F~~~~~~~GF~~~~~ 183 (219)
T PF05148_consen 135 -TNWPDFIREANRVLKPGGILKIAEVK---------------------------SRFENVKQFIKALKKLGFKLKSK 183 (219)
T ss_dssp -S-HHHHHHHHHHHEEEEEEEEEEEEG---------------------------GG-S-HHHHHHHHHCTTEEEEEE
T ss_pred -CCcHHHHHHHHheeccCcEEEEEEec---------------------------ccCcCHHHHHHHHHHCCCeEEec
Confidence 58999999999999999999999864 35667899999999999998763
No 94
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.45 E-value=2.4e-12 Score=117.66 Aligned_cols=124 Identities=15% Similarity=0.133 Sum_probs=95.6
Q ss_pred CCCeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecc--
Q 019123 160 EGLNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASE-- 235 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~-- 235 (346)
++.+|||+|||+|.++..++.. +.+|+++|+|+.+++.+++++...++..++.|+++|+.+. .++++||+|+++-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-LPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-cCCCCccEEEECCCC
Confidence 4568999999999999999986 4699999999999999999998887767899999998543 2456899999861
Q ss_pred ----hh-------cccC------------CHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccc
Q 019123 236 ----VI-------EHVA------------DPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQ 292 (346)
Q Consensus 236 ----~l-------~~~~------------~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (346)
.+ .|-+ ....+++.+.++|+|||.+++...
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g--------------------------- 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG--------------------------- 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC---------------------------
Confidence 11 1111 124678999999999999887642
Q ss_pred cccCCCHHHHHHHHHHCCCcEEE
Q 019123 293 WSSFLTPEELVLILQRASIDVKE 315 (346)
Q Consensus 293 ~~~~~~~~~~~~ll~~aGF~~v~ 315 (346)
++++.+.+++.++||....
T Consensus 253 ----~~~~~v~~~~~~~~~~~~~ 271 (284)
T TIGR03533 253 ----NSMEALEEAYPDVPFTWLE 271 (284)
T ss_pred ----cCHHHHHHHHHhCCCceee
Confidence 1335677788888887654
No 95
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.1e-12 Score=118.20 Aligned_cols=125 Identities=26% Similarity=0.411 Sum_probs=96.2
Q ss_pred CCCCeEEEECCCCchhHHHHHHcCC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchh
Q 019123 159 FEGLNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVI 237 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l 237 (346)
.++.+|||+|||+|.+++..+..|+ +|+|+|++|.+++.++.++..+++...+.....+....+ ....||+|+++-.
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-~~~~~DvIVANIL- 238 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-ENGPFDVIVANIL- 238 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-ccCcccEEEehhh-
Confidence 3788999999999999999999998 699999999999999999999887432322233322222 2358999998742
Q ss_pred cccCCH-HHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEE
Q 019123 238 EHVADP-AEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEM 316 (346)
Q Consensus 238 ~~~~~~-~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (346)
.++ ..+...+++.|||||+++++-+-.. ..+.+.+.++++||+++.+
T Consensus 239 ---A~vl~~La~~~~~~lkpgg~lIlSGIl~~-----------------------------q~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 239 ---AEVLVELAPDIKRLLKPGGRLILSGILED-----------------------------QAESVAEAYEQAGFEVVEV 286 (300)
T ss_pred ---HHHHHHHHHHHHHHcCCCceEEEEeehHh-----------------------------HHHHHHHHHHhCCCeEeEE
Confidence 232 4788999999999999999864321 1257788899999999875
Q ss_pred e
Q 019123 317 A 317 (346)
Q Consensus 317 ~ 317 (346)
.
T Consensus 287 ~ 287 (300)
T COG2264 287 L 287 (300)
T ss_pred E
Confidence 4
No 96
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.44 E-value=8.9e-13 Score=123.97 Aligned_cols=119 Identities=21% Similarity=0.259 Sum_probs=90.9
Q ss_pred HHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCC--CceEE
Q 019123 138 LAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPET--STIEY 213 (346)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~--~~v~~ 213 (346)
.+.+...+.+++ +.....+|||+|||+|.++..++.. +.+|+++|+|+.|++.+++++..++.. .++++
T Consensus 213 LD~GtrllL~~l-------p~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~ 285 (378)
T PRK15001 213 LDIGARFFMQHL-------PENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEF 285 (378)
T ss_pred cChHHHHHHHhC-------CcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEE
Confidence 445555555553 2223469999999999999999887 459999999999999999988766532 37899
Q ss_pred EEcCcccccccCCceeEEEecchhccc---CC--HHHHHHHHHHhcccCceEEEEe
Q 019123 214 CCTTAEKLVEEQRKFDAVIASEVIEHV---AD--PAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 214 ~~~d~~~l~~~~~~fDlv~~~~~l~~~---~~--~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
+..|+... .++.+||+|+|+-.++.. ++ ...+++.++++|||||.|++..
T Consensus 286 ~~~D~l~~-~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 286 MINNALSG-VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred EEcccccc-CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 98887543 235689999998665432 22 3478999999999999999985
No 97
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.43 E-value=7.6e-13 Score=115.86 Aligned_cols=149 Identities=15% Similarity=0.234 Sum_probs=102.4
Q ss_pred CCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhcc
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEH 239 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~ 239 (346)
...++||||.|.|..+..++....+|+++|+|+.|....+++- |.+.+..++...+.+||+|.|.++|..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg----------~~vl~~~~w~~~~~~fDvIscLNvLDR 163 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKKG----------FTVLDIDDWQQTDFKFDVISCLNVLDR 163 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhCC----------CeEEehhhhhccCCceEEEeehhhhhc
Confidence 4568999999999999999998889999999999988776642 223344444434568999999999999
Q ss_pred cCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHH-HHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEEec
Q 019123 240 VADPAEFCKSLSALTVSEGATVISTINRSMRAYATAII-AAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMAG 318 (346)
Q Consensus 240 ~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~ 318 (346)
..+|..+|+.+++.|+|+|.+++...-+.. ++..... ........++.....+.. ..+.+.+.++.+||+++.+..
T Consensus 164 c~~P~~LL~~i~~~l~p~G~lilAvVlP~~-pyVE~~~g~~~~P~e~l~~~g~~~E~--~v~~l~~v~~p~GF~v~~~tr 240 (265)
T PF05219_consen 164 CDRPLTLLRDIRRALKPNGRLILAVVLPFR-PYVEFGGGKSNRPSELLPVKGATFEE--QVSSLVNVFEPAGFEVERWTR 240 (265)
T ss_pred cCCHHHHHHHHHHHhCCCCEEEEEEEeccc-ccEEcCCCCCCCchhhcCCCCCcHHH--HHHHHHHHHHhcCCEEEEEec
Confidence 999999999999999999999987543211 1100000 000000111111111111 123455889999999999887
Q ss_pred ccc
Q 019123 319 FVY 321 (346)
Q Consensus 319 ~~~ 321 (346)
++|
T Consensus 241 ~PY 243 (265)
T PF05219_consen 241 LPY 243 (265)
T ss_pred cCc
Confidence 765
No 98
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.42 E-value=4.7e-12 Score=111.29 Aligned_cols=133 Identities=19% Similarity=0.264 Sum_probs=106.5
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHc-C-CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc--cCCceeEEE
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARM-G-ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE--EQRKFDAVI 232 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~--~~~~fDlv~ 232 (346)
......+|||+|||+|.+++.++.+ . .+++++|+.+.|.+.|++++..+++..++++++.|+.++.. ...+||+|+
T Consensus 41 ~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii 120 (248)
T COG4123 41 PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLII 120 (248)
T ss_pred ccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEE
Confidence 3334789999999999999999987 3 69999999999999999999999999999999999988763 345799999
Q ss_pred ecchhc----------------cc--CCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccc
Q 019123 233 ASEVIE----------------HV--ADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWS 294 (346)
Q Consensus 233 ~~~~l~----------------~~--~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (346)
|+--.. |. .+.+++++.+.++|||||.+.+.-.-
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~---------------------------- 172 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP---------------------------- 172 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH----------------------------
Confidence 964221 11 23568999999999999999988532
Q ss_pred cCCCHHHHHHHHHHCCCcEEEEecc
Q 019123 295 SFLTPEELVLILQRASIDVKEMAGF 319 (346)
Q Consensus 295 ~~~~~~~~~~ll~~aGF~~v~~~~~ 319 (346)
-...++..++++.+|...++..+
T Consensus 173 --erl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 173 --ERLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred --HHHHHHHHHHHhcCCCceEEEEe
Confidence 12257788888888888765443
No 99
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.42 E-value=1.3e-12 Score=111.07 Aligned_cols=153 Identities=16% Similarity=0.119 Sum_probs=118.9
Q ss_pred CCCeEEEECCCCchhHHHHHHcCC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhc
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIE 238 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~ 238 (346)
....++|||||.|.+...+...+. +++-+|.|..|++.++..- ... -.+....+|-+.+++.++++|+|+++..+|
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~--i~~~~~v~DEE~Ldf~ens~DLiisSlslH 148 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPS--IETSYFVGDEEFLDFKENSVDLIISSLSLH 148 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCc--eEEEEEecchhcccccccchhhhhhhhhhh
Confidence 346899999999999999998876 7999999999999987642 222 357788999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEE
Q 019123 239 HVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEM 316 (346)
Q Consensus 239 ~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (346)
+..|.+..+.++...|||+|.|+-..+..+...-++.-.......+ .......+..|....++..+|..|||....+
T Consensus 149 W~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER-~GGiSphiSPf~qvrDiG~LL~rAGF~m~tv 225 (325)
T KOG2940|consen 149 WTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELER-EGGISPHISPFTQVRDIGNLLTRAGFSMLTV 225 (325)
T ss_pred hhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHh-ccCCCCCcChhhhhhhhhhHHhhcCccccee
Confidence 9999999999999999999999988776554433332222212211 1122233456777789999999999998754
No 100
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.42 E-value=1.8e-12 Score=113.60 Aligned_cols=102 Identities=14% Similarity=0.105 Sum_probs=84.3
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecch
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEV 236 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~ 236 (346)
...++.+|||||||+|.++..++..+.+|+++|+++.+++.+++++...++ .++++..+|+.+...+.++||+|++...
T Consensus 75 ~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 75 ELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGL-HNVSVRHGDGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCC-CceEEEECCcccCCCcCCCcCEEEEccC
Confidence 445778999999999999998887767999999999999999999887766 4699999998654334578999999876
Q ss_pred hcccCCHHHHHHHHHHhcccCceEEEEec
Q 019123 237 IEHVADPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 237 l~~~~~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
+.++ .+.+.+.|+|||.+++...
T Consensus 154 ~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 154 APEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred chhh------hHHHHHhcCCCcEEEEEEc
Confidence 6544 3567899999999998764
No 101
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.42 E-value=1.6e-11 Score=107.42 Aligned_cols=163 Identities=12% Similarity=0.094 Sum_probs=115.7
Q ss_pred CCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccC-----------CCCCceEEEEcCccccccc---C
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLD-----------PETSTIEYCCTTAEKLVEE---Q 225 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~-----------~~~~~v~~~~~d~~~l~~~---~ 225 (346)
++.+||+.|||.|..+..|+++|++|+|+|+|+.+++.+.+..... --..+++++++|+.+++.. .
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~ 122 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence 5679999999999999999999999999999999999886632110 0125799999999998632 2
Q ss_pred CceeEEEecchhcccCC--HHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHH
Q 019123 226 RKFDAVIASEVIEHVAD--PAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELV 303 (346)
Q Consensus 226 ~~fDlv~~~~~l~~~~~--~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (346)
+.||+|+-..++.+++. ..++.+.+.++|+|||.+++..+.... ...+.. ...+.+++.
T Consensus 123 ~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~----------------~~~GPP---f~v~~~e~~ 183 (226)
T PRK13256 123 PVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDK----------------KSQTPP---YSVTQAELI 183 (226)
T ss_pred CCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCC----------------CCCCCC---CcCCHHHHH
Confidence 58999999999988864 357999999999999999998764311 011111 225778999
Q ss_pred HHHHHCCCcEEEEec---cccCCCCCceeeccCCceeEEEEe
Q 019123 304 LILQRASIDVKEMAG---FVYNPLTGRWSLSDDISVNFIAFG 342 (346)
Q Consensus 304 ~ll~~aGF~~v~~~~---~~~~~~~~~~~~~~~~~~~~l~~~ 342 (346)
+++.. +|.+..+.. ....|....-+.+.-...+|....
T Consensus 184 ~lf~~-~~~i~~l~~~~~~~~~p~~~~~g~~~~~~~~~~l~~ 224 (226)
T PRK13256 184 KNFSA-KIKFELIDSKQRDNIPDYRKAEGMTEQYYTTYLRKK 224 (226)
T ss_pred HhccC-CceEEEeeecccccCCcchhhcCcchhheeeEEEEe
Confidence 88854 344443322 233444444456666666666543
No 102
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.42 E-value=2.4e-12 Score=118.69 Aligned_cols=102 Identities=14% Similarity=0.203 Sum_probs=82.0
Q ss_pred CeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecc----
Q 019123 162 LNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASE---- 235 (346)
Q Consensus 162 ~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~---- 235 (346)
.+|||+|||+|.++..++.. +.+|+++|+|+.+++.+++++...++..++.++++|+.+. .++++||+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCCCCC
Confidence 68999999999999999887 4599999999999999999998887766799999998553 2356899999862
Q ss_pred --h-------hcccC------------CHHHHHHHHHHhcccCceEEEEe
Q 019123 236 --V-------IEHVA------------DPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 236 --~-------l~~~~------------~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
. +.|-+ ....+++.+.++|+|||.+++..
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 0 11111 12467899999999999998853
No 103
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.42 E-value=1.5e-12 Score=110.30 Aligned_cols=101 Identities=21% Similarity=0.284 Sum_probs=84.0
Q ss_pred CCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCc-ccccccCCceeEEEecchhc
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTA-EKLVEEQRKFDAVIASEVIE 238 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~-~~l~~~~~~fDlv~~~~~l~ 238 (346)
.+.-|||||||+|..+..+.+.|+.++|+|||+.||+.|.++-.. -.++.+|+ +.+|+++++||-|++...+.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~GlpfrpGtFDg~ISISAvQ 123 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELE------GDLILCDMGEGLPFRPGTFDGVISISAVQ 123 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhh------cCeeeeecCCCCCCCCCccceEEEeeeee
Confidence 567899999999999999999999999999999999999864322 34677777 66889999999999988887
Q ss_pred ccCC-------HH----HHHHHHHHhcccCceEEEEecC
Q 019123 239 HVAD-------PA----EFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 239 ~~~~-------~~----~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
++-+ |. .++..++.+|++|+..++...-
T Consensus 124 WLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 124 WLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred eecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 7643 22 4788899999999999887643
No 104
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.41 E-value=4.6e-12 Score=110.57 Aligned_cols=97 Identities=15% Similarity=0.182 Sum_probs=77.0
Q ss_pred CCCCeEEEECCCCchhHHHHHHcC---CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc--------ccCCc
Q 019123 159 FEGLNIVDVGCGGGILSEPLARMG---ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV--------EEQRK 227 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~~---~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~--------~~~~~ 227 (346)
.++.+|||||||+|.++..+++.. ..|+|+|+++ | . +. .++.++++|+.+.. ..+++
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~--~~-~~v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------D--PI-VGVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------c--CC-CCcEEEecCCCChHHHHHHHHHhCCCC
Confidence 467899999999999999998873 4899999988 2 1 11 45899999998853 45678
Q ss_pred eeEEEecchhcccCCH-----------HHHHHHHHHhcccCceEEEEecCc
Q 019123 228 FDAVIASEVIEHVADP-----------AEFCKSLSALTVSEGATVISTINR 267 (346)
Q Consensus 228 fDlv~~~~~l~~~~~~-----------~~~l~~~~r~LkpgG~~~~~~~~~ 267 (346)
||+|++..+.+...++ ..+|++++++|||||.|++..+..
T Consensus 118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 9999998766554332 468999999999999999987653
No 105
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.40 E-value=5.1e-12 Score=115.68 Aligned_cols=103 Identities=18% Similarity=0.225 Sum_probs=82.8
Q ss_pred CeEEEECCCCchhHHHHHHcC--CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecc----
Q 019123 162 LNIVDVGCGGGILSEPLARMG--ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASE---- 235 (346)
Q Consensus 162 ~~vLDiG~G~G~~~~~l~~~~--~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~---- 235 (346)
.+|||+|||+|.++..++... .+|+++|+|+.+++.+++++...++..++.|+++|+.+. .++++||+|+++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~-~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP-LAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc-CcCCCccEEEECCCCCC
Confidence 689999999999999999863 599999999999999999988877755699999998653 3345899999851
Q ss_pred ---------hhcccC------------CHHHHHHHHHHhcccCceEEEEec
Q 019123 236 ---------VIEHVA------------DPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 236 ---------~l~~~~------------~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
++.|-+ ....++.++.++|+|||++++...
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 222222 245688999999999999887653
No 106
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.40 E-value=2e-12 Score=117.63 Aligned_cols=122 Identities=29% Similarity=0.441 Sum_probs=92.7
Q ss_pred CCCCeEEEECCCCchhHHHHHHcCC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchh
Q 019123 159 FEGLNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVI 237 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l 237 (346)
.++.+|||||||+|.+++..+..|+ +|+++|+++.+++.+++++..+++..++.+. ...+. ....||+|+++-..
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~--~~~~~dlvvANI~~ 235 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL--VEGKFDLVVANILA 235 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT--CCS-EEEEEEES-H
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc--ccccCCEEEECCCH
Confidence 4678999999999999999999998 7999999999999999999999987766553 22222 24789999987533
Q ss_pred cccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEEe
Q 019123 238 EHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMA 317 (346)
Q Consensus 238 ~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (346)
. -...++..+.++|+|||.|+++-+-.. ..+++.+.+++ ||++++..
T Consensus 236 ~---vL~~l~~~~~~~l~~~G~lIlSGIl~~-----------------------------~~~~v~~a~~~-g~~~~~~~ 282 (295)
T PF06325_consen 236 D---VLLELAPDIASLLKPGGYLILSGILEE-----------------------------QEDEVIEAYKQ-GFELVEER 282 (295)
T ss_dssp H---HHHHHHHHCHHHEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHT-TEEEEEEE
T ss_pred H---HHHHHHHHHHHhhCCCCEEEEccccHH-----------------------------HHHHHHHHHHC-CCEEEEEE
Confidence 2 234678889999999999999875421 12577778876 99987643
No 107
>PHA03411 putative methyltransferase; Provisional
Probab=99.39 E-value=5.1e-12 Score=112.67 Aligned_cols=140 Identities=12% Similarity=0.168 Sum_probs=103.7
Q ss_pred CCCeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchh
Q 019123 160 EGLNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVI 237 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l 237 (346)
...+|||+|||+|.++..++.+ +.+|+++|+++.|++.++++. .++.++++|+.++.. +.+||+|+++-.+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~-~~kFDlIIsNPPF 136 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES-NEKFDVVISNPPF 136 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc-cCCCcEEEEcCCc
Confidence 4569999999999999988775 469999999999999998864 368899999988653 4689999997766
Q ss_pred cccCC--------------------HHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCC
Q 019123 238 EHVAD--------------------PAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFL 297 (346)
Q Consensus 238 ~~~~~--------------------~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (346)
.+.+. ...++.....+|+|+|.+++.-.... .+..-.
T Consensus 137 ~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~-----------------------~y~~sl 193 (279)
T PHA03411 137 GKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP-----------------------YYDGTM 193 (279)
T ss_pred cccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc-----------------------cccccC
Confidence 65422 13456777788999997766632211 112346
Q ss_pred CHHHHHHHHHHCCCcEEEEeccccCCCCCcee
Q 019123 298 TPEELVLILQRASIDVKEMAGFVYNPLTGRWS 329 (346)
Q Consensus 298 ~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~ 329 (346)
++.++..+++++||..-.--++....+...|+
T Consensus 194 ~~~~y~~~l~~~g~~~~~~~~~~~~~~~~~~~ 225 (279)
T PHA03411 194 KSNKYLKWSKQTGLVTYAGCGIDTSIYRDEWH 225 (279)
T ss_pred CHHHHHHHHHhcCcEecCCCCcccceehhhcc
Confidence 88999999999999875444554555555564
No 108
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.37 E-value=9.9e-12 Score=107.65 Aligned_cols=110 Identities=20% Similarity=0.283 Sum_probs=93.0
Q ss_pred CCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhcc
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEH 239 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~ 239 (346)
....|.|+|||.+.++. .....|+.+|+-+ .+-.++.+|+.++|.++.+.|++++...|.
T Consensus 180 ~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a----------------~~~~V~~cDm~~vPl~d~svDvaV~CLSLM- 239 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS---SERHKVHSFDLVA----------------VNERVIACDMRNVPLEDESVDVAVFCLSLM- 239 (325)
T ss_pred CceEEEecccchhhhhh---ccccceeeeeeec----------------CCCceeeccccCCcCccCcccEEEeeHhhh-
Confidence 55789999999999887 3334799999865 445678899999999999999999887774
Q ss_pred cCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEE
Q 019123 240 VADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEM 316 (346)
Q Consensus 240 ~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (346)
.+|+..++++++|+||+||.++|.+.. .+|.+...|...+...||.+...
T Consensus 240 gtn~~df~kEa~RiLk~gG~l~IAEv~---------------------------SRf~dv~~f~r~l~~lGF~~~~~ 289 (325)
T KOG3045|consen 240 GTNLADFIKEANRILKPGGLLYIAEVK---------------------------SRFSDVKGFVRALTKLGFDVKHK 289 (325)
T ss_pred cccHHHHHHHHHHHhccCceEEEEehh---------------------------hhcccHHHHHHHHHHcCCeeeeh
Confidence 468999999999999999999999864 25777788999999999998753
No 109
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.37 E-value=1.7e-11 Score=111.74 Aligned_cols=126 Identities=19% Similarity=0.213 Sum_probs=95.0
Q ss_pred CCCCeEEEECCCCchhHHHHHHcC--CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecch
Q 019123 159 FEGLNIVDVGCGGGILSEPLARMG--ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEV 236 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~~--~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~ 236 (346)
.++.+|||+|||+|.++..++... .+|+|+|+++.+++.+++++. .....++.++.+|+... .++++||+|+++.-
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npP 184 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEP-LPGGRFDLIVSNPP 184 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCc-CCCCceeEEEECCC
Confidence 456799999999999999999874 699999999999999999877 22336799999998543 23578999998521
Q ss_pred hc--------------c------------cCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCc
Q 019123 237 IE--------------H------------VADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGT 290 (346)
Q Consensus 237 l~--------------~------------~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (346)
.. + +.....+++++.++|||||.+++.. ..
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g~----------------------- 240 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-GY----------------------- 240 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-Cc-----------------------
Confidence 10 0 1113568888999999999998853 11
Q ss_pred cccccCCCHHHHHHHHHHCCCcEEEE
Q 019123 291 HQWSSFLTPEELVLILQRASIDVKEM 316 (346)
Q Consensus 291 ~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (346)
...+++..++++.||..+.+
T Consensus 241 ------~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 241 ------DQGEAVRALLAAAGFADVET 260 (275)
T ss_pred ------hHHHHHHHHHHhCCCceeEE
Confidence 12256888999999986654
No 110
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.36 E-value=4.3e-12 Score=118.56 Aligned_cols=101 Identities=21% Similarity=0.228 Sum_probs=83.6
Q ss_pred CCeEEEECCCCchhHHHHHHcC--CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhc
Q 019123 161 GLNIVDVGCGGGILSEPLARMG--ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIE 238 (346)
Q Consensus 161 ~~~vLDiG~G~G~~~~~l~~~~--~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~ 238 (346)
..+|||+|||+|.++..++..+ .+|+++|+++.|++.+++++..+++ ...++..|+... .++.||+|+++..+|
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l--~~~~~~~D~~~~--~~~~fDlIvsNPPFH 272 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL--EGEVFASNVFSD--IKGRFDMIISNPPFH 272 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCEEEEcccccc--cCCCccEEEECCCcc
Confidence 4589999999999999999874 4899999999999999999888765 356777776543 256899999998877
Q ss_pred ccC-----CHHHHHHHHHHhcccCceEEEEec
Q 019123 239 HVA-----DPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 239 ~~~-----~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
+.. ....+++++.++|||||.|++...
T Consensus 273 ~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 273 DGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 532 346899999999999999998764
No 111
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.35 E-value=2.1e-11 Score=115.00 Aligned_cols=125 Identities=16% Similarity=0.162 Sum_probs=93.9
Q ss_pred CCCeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc-cCCceeEEEecch
Q 019123 160 EGLNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE-EQRKFDAVIASEV 236 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~fDlv~~~~~ 236 (346)
++.+|||+|||+|.++..++.. +.+|+++|+|+.|++.+++++...+ .++.++++|+.+... ..++||+|+++--
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g--~rV~fi~gDl~e~~l~~~~~FDLIVSNPP 328 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG--ARVEFAHGSWFDTDMPSEGKWDIIVSNPP 328 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEcchhccccccCCCccEEEECCC
Confidence 4569999999999999998865 5699999999999999999987765 379999999865432 2457999999541
Q ss_pred hc---------------------ccCC----HHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCcc
Q 019123 237 IE---------------------HVAD----PAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTH 291 (346)
Q Consensus 237 l~---------------------~~~~----~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (346)
.. ...+ ...+++.+.+.|+|||.+++.. .
T Consensus 329 YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi-G------------------------- 382 (423)
T PRK14966 329 YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH-G------------------------- 382 (423)
T ss_pred CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE-C-------------------------
Confidence 10 0011 2356777788999999887543 2
Q ss_pred ccccCCCHHHHHHHHHHCCCcEEEE
Q 019123 292 QWSSFLTPEELVLILQRASIDVKEM 316 (346)
Q Consensus 292 ~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (346)
+...+.+.+++++.||..+++
T Consensus 383 ----~~Q~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 383 ----FDQGAAVRGVLAENGFSGVET 403 (423)
T ss_pred ----ccHHHHHHHHHHHCCCcEEEE
Confidence 122367888999999987764
No 112
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.35 E-value=1.3e-11 Score=108.04 Aligned_cols=165 Identities=21% Similarity=0.259 Sum_probs=109.7
Q ss_pred CCCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhcc--C-----C----CCCceEEEEcCcccccccC-
Q 019123 158 PFEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADL--D-----P----ETSTIEYCCTTAEKLVEEQ- 225 (346)
Q Consensus 158 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~--~-----~----~~~~v~~~~~d~~~l~~~~- 225 (346)
..++.+||..|||.|..+..|+++|++|+|+|+|+.+++.+.+.... . . -..+|+++++|+.+++...
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~ 114 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV 114 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred CCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence 34667999999999999999999999999999999999998433211 0 0 1356899999999887533
Q ss_pred CceeEEEecchhcccC--CHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHH
Q 019123 226 RKFDAVIASEVIEHVA--DPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELV 303 (346)
Q Consensus 226 ~~fDlv~~~~~l~~~~--~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (346)
++||+|+=..++..++ ...++.+.+.++|+|||.+++.++.... . ...+ . ....+.+++.
T Consensus 115 g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~--------------~-~~~G-P--Pf~v~~~ev~ 176 (218)
T PF05724_consen 115 GKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQ--------------G-EMEG-P--PFSVTEEEVR 176 (218)
T ss_dssp HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-C--------------S-CSSS-S--S----HHHHH
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCC--------------c-CCCC-c--CCCCCHHHHH
Confidence 4799999777776664 4578999999999999995444432110 0 0011 1 1236789999
Q ss_pred HHHHHCCCcEEEEecccc---CCCCCceeeccCCceeEEEE
Q 019123 304 LILQRASIDVKEMAGFVY---NPLTGRWSLSDDISVNFIAF 341 (346)
Q Consensus 304 ~ll~~aGF~~v~~~~~~~---~~~~~~~~~~~~~~~~~l~~ 341 (346)
+++. .+|++..++.... .|....|++..-....|+..
T Consensus 177 ~l~~-~~f~i~~l~~~~~~~~~~~~~~~~~~~~~e~~~~l~ 216 (218)
T PF05724_consen 177 ELFG-PGFEIEELEEEDSIEEEPRFKSWGLSRFREKVYVLR 216 (218)
T ss_dssp HHHT-TTEEEEEEEEEE-TTT-HHHHCCT-SS-EEEEEEEE
T ss_pred HHhc-CCcEEEEEecccccccccchhhcCcCceeEEEEEEE
Confidence 9998 9999887654222 22334566666555566543
No 113
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.35 E-value=9.9e-12 Score=94.60 Aligned_cols=100 Identities=32% Similarity=0.483 Sum_probs=84.0
Q ss_pred eEEEECCCCchhHHHHHH-cCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc-cCCceeEEEecchhcc-
Q 019123 163 NIVDVGCGGGILSEPLAR-MGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE-EQRKFDAVIASEVIEH- 239 (346)
Q Consensus 163 ~vLDiG~G~G~~~~~l~~-~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~fDlv~~~~~l~~- 239 (346)
+|||+|||.|.++..++. ...+++++|+++.++..+++...... ..++.++..|+.+... ..++||+|++..++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 489999999999999987 45699999999999998885333222 2678999999988764 5678999999999988
Q ss_pred cCCHHHHHHHHHHhcccCceEEEE
Q 019123 240 VADPAEFCKSLSALTVSEGATVIS 263 (346)
Q Consensus 240 ~~~~~~~l~~~~r~LkpgG~~~~~ 263 (346)
......+++.+.+.|+|||.+++.
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 667789999999999999999876
No 114
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.35 E-value=3.7e-11 Score=116.39 Aligned_cols=109 Identities=20% Similarity=0.256 Sum_probs=89.1
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHc---CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc----ccCCcee
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARM---GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV----EEQRKFD 229 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~----~~~~~fD 229 (346)
.+.++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++...++ .++.++++|+..++ ...++||
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~~~fD 327 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL-KSIKILAADSRNLLELKPQWRGYFD 327 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-CeEEEEeCChhhcccccccccccCC
Confidence 4557889999999999999999876 24899999999999999999988887 46999999998775 3357899
Q ss_pred EEEec------chhcccCC----------------HHHHHHHHHHhcccCceEEEEecC
Q 019123 230 AVIAS------EVIEHVAD----------------PAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 230 lv~~~------~~l~~~~~----------------~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
.|++. .++++-++ ..++|.++.++|||||.|+..+.+
T Consensus 328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 99973 24444333 246899999999999999988754
No 115
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=2.6e-11 Score=105.73 Aligned_cols=105 Identities=22% Similarity=0.234 Sum_probs=93.1
Q ss_pred CCCCCCCeEEEECCCCchhHHHHHHc---CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEE
Q 019123 156 ARPFEGLNIVDVGCGGGILSEPLARM---GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVI 232 (346)
Q Consensus 156 ~~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~ 232 (346)
.+..++.+|||.|.|+|.++..|+.. ..+|+.+|+-++.++.|++++...++.+++.+...|+.+...++ .||.|+
T Consensus 90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~ 168 (256)
T COG2519 90 LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVF 168 (256)
T ss_pred cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEE
Confidence 46789999999999999999999975 24899999999999999999999888777999999998876544 899998
Q ss_pred ecchhcccCCHHHHHHHHHHhcccCceEEEEecC
Q 019123 233 ASEVIEHVADPAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 233 ~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
. .+++|..++..++.+|||||.++|-.++
T Consensus 169 L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 169 L-----DLPDPWNVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred E-----cCCChHHHHHHHHHHhCCCcEEEEEcCC
Confidence 7 5689999999999999999999988765
No 116
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.32 E-value=3.2e-11 Score=117.14 Aligned_cols=136 Identities=24% Similarity=0.292 Sum_probs=103.1
Q ss_pred CCCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccc----cccCCceeEEEe
Q 019123 158 PFEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKL----VEEQRKFDAVIA 233 (346)
Q Consensus 158 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l----~~~~~~fDlv~~ 233 (346)
..++.+|||+|||+|.++..++..+.+|+|+|+|+.|++.|++++..+++ .++.|+++|+.+. ++.+++||+|++
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~ 373 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGL-DNVTFYHANLEEDFTDQPWALGGFDKVLL 373 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEeChHHhhhhhhhhcCCCCEEEE
Confidence 34668999999999999999999888999999999999999999887776 5799999998653 233567999987
Q ss_pred cchhcccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcE
Q 019123 234 SEVIEHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDV 313 (346)
Q Consensus 234 ~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~ 313 (346)
.---. .....++.+.+ ++|+++++++. ++... ..++. .|.+.||++
T Consensus 374 dPPr~---g~~~~~~~l~~-~~~~~ivyvSC-np~tl----------------------------aRDl~-~L~~~gY~l 419 (443)
T PRK13168 374 DPPRA---GAAEVMQALAK-LGPKRIVYVSC-NPATL----------------------------ARDAG-VLVEAGYRL 419 (443)
T ss_pred CcCCc---ChHHHHHHHHh-cCCCeEEEEEe-ChHHh----------------------------hccHH-HHhhCCcEE
Confidence 43211 12355655555 68999888875 22110 01233 345789999
Q ss_pred EEEeccccCCCCCce
Q 019123 314 KEMAGFVYNPLTGRW 328 (346)
Q Consensus 314 v~~~~~~~~~~~~~~ 328 (346)
..+..+.+.|.|.|.
T Consensus 420 ~~i~~~DmFP~T~Hv 434 (443)
T PRK13168 420 KRAGMLDMFPHTGHV 434 (443)
T ss_pred EEEEEeccCCCCCcE
Confidence 999999999999874
No 117
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.31 E-value=7e-11 Score=109.75 Aligned_cols=134 Identities=16% Similarity=0.193 Sum_probs=100.1
Q ss_pred CCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc-cCCceeEEEecchhc
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE-EQRKFDAVIASEVIE 238 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~fDlv~~~~~l~ 238 (346)
++.+|||+|||+|.++..++..+.+|+|+|+++.|++.+++++...++ .+++|+++|+.++.. ..+.||+|++.---.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 467999999999999999999999999999999999999999988887 689999999987643 345799999863211
Q ss_pred ccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEEec
Q 019123 239 HVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMAG 318 (346)
Q Consensus 239 ~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~ 318 (346)
.+ ...+++ +...++|++++++..-... -..++..+ .||++..+..
T Consensus 252 G~--~~~~~~-~l~~~~~~~ivyvsc~p~t-----------------------------~~rd~~~l---~~y~~~~~~~ 296 (315)
T PRK03522 252 GI--GKELCD-YLSQMAPRFILYSSCNAQT-----------------------------MAKDLAHL---PGYRIERVQL 296 (315)
T ss_pred Cc--cHHHHH-HHHHcCCCeEEEEECCccc-----------------------------chhHHhhc---cCcEEEEEEE
Confidence 00 122333 3334678887777642210 11344444 6999999999
Q ss_pred cccCCCCCcee
Q 019123 319 FVYNPLTGRWS 329 (346)
Q Consensus 319 ~~~~~~~~~~~ 329 (346)
+.+.|.|.|..
T Consensus 297 ~DmFP~T~HvE 307 (315)
T PRK03522 297 FDMFPHTAHYE 307 (315)
T ss_pred eccCCCCCeEE
Confidence 99999998753
No 118
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.31 E-value=1.9e-11 Score=120.03 Aligned_cols=126 Identities=20% Similarity=0.257 Sum_probs=95.0
Q ss_pred CCCeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecc--
Q 019123 160 EGLNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASE-- 235 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~-- 235 (346)
++.+|||+|||+|.++..++.. +.+|+++|+|+.+++.+++++...++..++.++.+|+.+. .+.++||+|+++-
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~~~~~fDlIvsNPPY 216 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-IEKQKFDFIVSNPPY 216 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-CcCCCccEEEECCCC
Confidence 3468999999999999988865 5699999999999999999988777767899999997542 2356899999842
Q ss_pred ------------hhcccC--------C----HHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCcc
Q 019123 236 ------------VIEHVA--------D----PAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTH 291 (346)
Q Consensus 236 ------------~l~~~~--------~----~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (346)
++.|-+ + ...+++.+.++|+|||.+++.. .
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi-g------------------------- 270 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI-G------------------------- 270 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE-C-------------------------
Confidence 111111 1 2356788899999999988752 2
Q ss_pred ccccCCCHHHHHHHHHHCCCcEEEE
Q 019123 292 QWSSFLTPEELVLILQRASIDVKEM 316 (346)
Q Consensus 292 ~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (346)
+-..+.+.+++.+.||..+.+
T Consensus 271 ----~~q~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 271 ----FKQEEAVTQIFLDHGYNIESV 291 (506)
T ss_pred ----CchHHHHHHHHHhcCCCceEE
Confidence 112356778888889886654
No 119
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.30 E-value=2.2e-11 Score=112.89 Aligned_cols=109 Identities=23% Similarity=0.249 Sum_probs=79.5
Q ss_pred CCCeEEEECCCCchhHHHHHHcCC-eEEEEcCChHHHHHHHHhhcc---------CCCCCceEEEEcCccccc----cc-
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIKIARLHADL---------DPETSTIEYCCTTAEKLV----EE- 224 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~---------~~~~~~v~~~~~d~~~l~----~~- 224 (346)
++.+|||+|||-|.-+.-+...+. .++|+||+...|+.|+++... ....-...|+.+|+.... ++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 778999999998877776666654 899999999999999999822 111234678888875432 22
Q ss_pred -CCceeEEEecchhcccC-C---HHHHHHHHHHhcccCceEEEEecCcc
Q 019123 225 -QRKFDAVIASEVIEHVA-D---PAEFCKSLSALTVSEGATVISTINRS 268 (346)
Q Consensus 225 -~~~fDlv~~~~~l~~~~-~---~~~~l~~~~r~LkpgG~~~~~~~~~~ 268 (346)
...||+|-|-++|||.= + ...+|+.+...|+|||+|+...++..
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 35999999999999873 3 34589999999999999999998753
No 120
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.29 E-value=6.8e-11 Score=104.90 Aligned_cols=152 Identities=12% Similarity=0.030 Sum_probs=114.8
Q ss_pred CCCCeEEEECCCCchhHHHHHHcC----CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc---ccCCceeEE
Q 019123 159 FEGLNIVDVGCGGGILSEPLARMG----ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV---EEQRKFDAV 231 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~~----~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~---~~~~~fDlv 231 (346)
..+.+||||+||.|...+..+... .+|...|.++..++.+++.+...++..-++|.++|+.+.. .-+...+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 356799999999998877776652 3799999999999999999999999766799999986642 123457999
Q ss_pred EecchhcccCCH---HHHHHHHHHhcccCceEEEEe--cCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHH
Q 019123 232 IASEVIEHVADP---AEFCKSLSALTVSEGATVIST--INRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLIL 306 (346)
Q Consensus 232 ~~~~~l~~~~~~---~~~l~~~~r~LkpgG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 306 (346)
+++..++.|+|- ...|.-+++++.|||+++... +++........+.. ...+..-..+..++.|+.+++
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~Lts-------Hr~g~~WvMRrRsq~EmD~Lv 286 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTS-------HRDGKAWVMRRRSQAEMDQLV 286 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhc-------ccCCCceEEEecCHHHHHHHH
Confidence 999999999984 457899999999999999986 44433222222111 111111224668999999999
Q ss_pred HHCCCcEEEEe
Q 019123 307 QRASIDVKEMA 317 (346)
Q Consensus 307 ~~aGF~~v~~~ 317 (346)
+.|||+.+...
T Consensus 287 ~~aGF~K~~q~ 297 (311)
T PF12147_consen 287 EAAGFEKIDQR 297 (311)
T ss_pred HHcCCchhhhe
Confidence 99999976543
No 121
>PRK01581 speE spermidine synthase; Validated
Probab=99.29 E-value=1e-10 Score=108.24 Aligned_cols=147 Identities=14% Similarity=0.196 Sum_probs=101.0
Q ss_pred CCCCeEEEECCCCchhHHHHHHcC--CeEEEEcCChHHHHHHHHhh-----ccCCC-CCceEEEEcCccccc-ccCCcee
Q 019123 159 FEGLNIVDVGCGGGILSEPLARMG--ATVTGIDAVEKNIKIARLHA-----DLDPE-TSTIEYCCTTAEKLV-EEQRKFD 229 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~~--~~v~giD~s~~~l~~a~~~~-----~~~~~-~~~v~~~~~d~~~l~-~~~~~fD 229 (346)
..+.+||+||||+|..+..++++. .+|+++|++++|++.|++.. ....+ +++++++.+|+.+.- ...++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 355799999999999999998874 48999999999999999621 11122 478999999998743 3456899
Q ss_pred EEEecchhc--c-cCC--HHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHH
Q 019123 230 AVIASEVIE--H-VAD--PAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVL 304 (346)
Q Consensus 230 lv~~~~~l~--~-~~~--~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (346)
+|++...-. . ... -.++++.+++.|+|||+|++..-++.... .....+..
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~-------------------------~~~~~i~~ 283 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAP-------------------------LVYWSIGN 283 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhH-------------------------HHHHHHHH
Confidence 999874210 0 001 14689999999999999988754321100 00023667
Q ss_pred HHHHCCCcEEEEeccccCCCCCceeec
Q 019123 305 ILQRASIDVKEMAGFVYNPLTGRWSLS 331 (346)
Q Consensus 305 ll~~aGF~~v~~~~~~~~~~~~~~~~~ 331 (346)
.++++||.+..+..+.-.. .+.|++.
T Consensus 284 tL~~af~~v~~y~t~vPsy-g~~WgF~ 309 (374)
T PRK01581 284 TIEHAGLTVKSYHTIVPSF-GTDWGFH 309 (374)
T ss_pred HHHHhCCceEEEEEecCCC-CCceEEE
Confidence 8999999887665542222 2236654
No 122
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.29 E-value=6.8e-11 Score=114.89 Aligned_cols=110 Identities=22% Similarity=0.250 Sum_probs=87.6
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHc---CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEe
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARM---GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIA 233 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~ 233 (346)
.+.++.+|||+|||+|..+..+++. +.+|+++|+++.+++.+++++...++ .++.++++|+..++ ++++||+|++
T Consensus 247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~~Da~~~~-~~~~fD~Vl~ 324 (445)
T PRK14904 247 NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-TIIETIEGDARSFS-PEEQPDAILL 324 (445)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-CeEEEEeCcccccc-cCCCCCEEEE
Confidence 4457789999999999999888764 35899999999999999999988877 47999999998775 4568999996
Q ss_pred c------chhcccC------C----------HHHHHHHHHHhcccCceEEEEecCcc
Q 019123 234 S------EVIEHVA------D----------PAEFCKSLSALTVSEGATVISTINRS 268 (346)
Q Consensus 234 ~------~~l~~~~------~----------~~~~l~~~~r~LkpgG~~~~~~~~~~ 268 (346)
. .++..-+ + ...+|..+.++|||||.++..+.+..
T Consensus 325 D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 325 DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 2 1221111 1 12589999999999999999987653
No 123
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.29 E-value=1.4e-11 Score=113.78 Aligned_cols=101 Identities=15% Similarity=0.247 Sum_probs=82.2
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHcC---CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEe
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARMG---ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIA 233 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~ 233 (346)
...++.+|||||||+|.++..+++.. ..|+++|+++++++.+++++...+. .++.++++|+.........||+|++
T Consensus 77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~~fD~Ii~ 155 (322)
T PRK13943 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFAPYDVIFV 155 (322)
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccCCccEEEE
Confidence 34567899999999999999998763 3699999999999999998887776 6799999998776544567999999
Q ss_pred cchhcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 234 SEVIEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 234 ~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
...+.+++ ..+.++|+|||.+++..
T Consensus 156 ~~g~~~ip------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 156 TVGVDEVP------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CCchHHhH------HHHHHhcCCCCEEEEEe
Confidence 87665442 34678999999988853
No 124
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.28 E-value=1.4e-10 Score=112.07 Aligned_cols=108 Identities=17% Similarity=0.207 Sum_probs=85.5
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHcC--CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc--ccCCceeEEE
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARMG--ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV--EEQRKFDAVI 232 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~fDlv~ 232 (346)
.+.++.+|||+|||+|..+..+++.+ .+|+++|+++.+++.+++++...++ ++.++++|+.+++ .+.++||+|+
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~~~~~~fD~Vl 318 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQWWDGQPFDRIL 318 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhhcccCCCCEEE
Confidence 44578899999999999999999874 4899999999999999999988775 3789999998754 2356899999
Q ss_pred ecc------hhcc------cCC----------HHHHHHHHHHhcccCceEEEEecC
Q 019123 233 ASE------VIEH------VAD----------PAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 233 ~~~------~l~~------~~~----------~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
+.. ++.+ ... ...+|..+.++|||||.+++.+.+
T Consensus 319 ~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 319 LDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred ECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 532 1111 111 136899999999999999988764
No 125
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.27 E-value=2.6e-10 Score=110.26 Aligned_cols=111 Identities=20% Similarity=0.188 Sum_probs=87.4
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc--cCCceeEEE
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE--EQRKFDAVI 232 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~--~~~~fDlv~ 232 (346)
.+.++.+|||+|||+|..+..+++. ..+|+++|+++.+++.+++++...++...+.+..+|....+. +.++||.|+
T Consensus 235 ~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vl 314 (426)
T TIGR00563 235 APQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRIL 314 (426)
T ss_pred CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEE
Confidence 4557789999999999999999876 358999999999999999999887764334446677655443 467899999
Q ss_pred ec------chhcccCC----------------HHHHHHHHHHhcccCceEEEEecCc
Q 019123 233 AS------EVIEHVAD----------------PAEFCKSLSALTVSEGATVISTINR 267 (346)
Q Consensus 233 ~~------~~l~~~~~----------------~~~~l~~~~r~LkpgG~~~~~~~~~ 267 (346)
+. .++++.++ ...+|.++.++|||||.++..+.+-
T Consensus 315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 62 34555444 2468999999999999999998764
No 126
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=3.3e-11 Score=102.95 Aligned_cols=102 Identities=21% Similarity=0.240 Sum_probs=89.2
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecch
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEV 236 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~ 236 (346)
.+.++.+|||||||+|+.+.-|++...+|+.+|..+...+.|++++...++ .||.+.++|...-..+...||.|++...
T Consensus 69 ~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~-~nV~v~~gDG~~G~~~~aPyD~I~Vtaa 147 (209)
T COG2518 69 ELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGY-ENVTVRHGDGSKGWPEEAPYDRIIVTAA 147 (209)
T ss_pred CCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCC-CceEEEECCcccCCCCCCCcCEEEEeec
Confidence 567889999999999999999999978999999999999999999999988 5699999999776656688999999987
Q ss_pred hcccCCHHHHHHHHHHhcccCceEEEEec
Q 019123 237 IEHVADPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 237 l~~~~~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
...++ +.+.+.||+||.+++-.-
T Consensus 148 a~~vP------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 148 APEVP------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred cCCCC------HHHHHhcccCCEEEEEEc
Confidence 76665 336678999999998764
No 127
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.27 E-value=9.5e-11 Score=104.76 Aligned_cols=98 Identities=20% Similarity=0.171 Sum_probs=80.8
Q ss_pred CCCCCeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecc
Q 019123 158 PFEGLNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASE 235 (346)
Q Consensus 158 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~ 235 (346)
..+..+|||||+|.|.++..++.+ +.+++.+|+ |..++.+++ ..+++++.+|+. -++|. +|+|++.+
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f-~~~P~--~D~~~l~~ 166 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFF-DPLPV--ADVYLLRH 166 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TT-TCCSS--ESEEEEES
T ss_pred ccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHH-hhhcc--ccceeeeh
Confidence 335578999999999999999987 569999998 888888877 278999999998 45554 99999999
Q ss_pred hhcccCCHH--HHHHHHHHhcccC--ceEEEEecC
Q 019123 236 VIEHVADPA--EFCKSLSALTVSE--GATVISTIN 266 (346)
Q Consensus 236 ~l~~~~~~~--~~l~~~~r~Lkpg--G~~~~~~~~ 266 (346)
+||++++.+ .+|+++++.|+|| |.|+|.+..
T Consensus 167 vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 167 VLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp SGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 999998754 6899999999999 999998874
No 128
>PRK04457 spermidine synthase; Provisional
Probab=99.26 E-value=4.4e-11 Score=107.98 Aligned_cols=108 Identities=19% Similarity=0.274 Sum_probs=84.9
Q ss_pred CCCeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-ccCCceeEEEecch
Q 019123 160 EGLNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-EEQRKFDAVIASEV 236 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-~~~~~fDlv~~~~~ 236 (346)
++.+|||||||+|.++..++.. +.+|+++|+++++++.+++.+...+..++++++++|+.+.. ...++||+|++...
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~ 145 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGF 145 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCC
Confidence 5679999999999999999876 45899999999999999998865544578999999986642 23468999997531
Q ss_pred h-cccC---CHHHHHHHHHHhcccCceEEEEecCc
Q 019123 237 I-EHVA---DPAEFCKSLSALTVSEGATVISTINR 267 (346)
Q Consensus 237 l-~~~~---~~~~~l~~~~r~LkpgG~~~~~~~~~ 267 (346)
- ...+ ...++++++.++|+|||++++..+..
T Consensus 146 ~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 146 DGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred CCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 1 1111 12689999999999999999976654
No 129
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.25 E-value=2.4e-10 Score=111.16 Aligned_cols=109 Identities=25% Similarity=0.284 Sum_probs=85.6
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHc---CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc-cCCceeEEE
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARM---GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE-EQRKFDAVI 232 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~fDlv~ 232 (346)
.+.++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++...++ .++.++++|+.++.. -.++||+|+
T Consensus 247 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~~~~~~fD~Vl 325 (444)
T PRK14902 247 DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL-TNIETKALDARKVHEKFAEKFDKIL 325 (444)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCCcccccchhcccCCEEE
Confidence 3456789999999999999999875 35899999999999999999988887 459999999987641 126899999
Q ss_pred ecc------hhcccCC----------------HHHHHHHHHHhcccCceEEEEecC
Q 019123 233 ASE------VIEHVAD----------------PAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 233 ~~~------~l~~~~~----------------~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
+.. ++.+-++ ...+|+.+.++|||||.++..+.+
T Consensus 326 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 326 VDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred EcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 742 1221111 135799999999999999977654
No 130
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.25 E-value=5.8e-11 Score=112.94 Aligned_cols=107 Identities=17% Similarity=0.178 Sum_probs=84.3
Q ss_pred CCCeEEEECCCCchhHHHHHHcCC-eEEEEcCChHHHHHHHHhhccCCCC-CceEEEEcCccccc--c--cCCceeEEEe
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIKIARLHADLDPET-STIEYCCTTAEKLV--E--EQRKFDAVIA 233 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~-~~v~~~~~d~~~l~--~--~~~~fDlv~~ 233 (346)
++.+|||+|||+|.++..++..++ +|+++|+++.+++.+++++..+++. .+++++++|+.+.. . ...+||+|++
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 578999999999999988776666 8999999999999999999988875 47999999997653 1 2568999998
Q ss_pred cchh---------cccCCHHHHHHHHHHhcccCceEEEEecC
Q 019123 234 SEVI---------EHVADPAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 234 ~~~l---------~~~~~~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
.--. ....+...++..+.++|+|||.|++...+
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 6321 01123445677788999999999876544
No 131
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.24 E-value=7.1e-11 Score=120.64 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=99.9
Q ss_pred CCCeEEEECCCCchhHHHHHHcCC-eEEEEcCChHHHHHHHHhhccCCCC-CceEEEEcCccccc-ccCCceeEEEecc-
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIKIARLHADLDPET-STIEYCCTTAEKLV-EEQRKFDAVIASE- 235 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~-~~v~~~~~d~~~l~-~~~~~fDlv~~~~- 235 (346)
++.+|||+|||+|.++..++..|+ +|+++|+|+.+++.+++++..+++. .+++|+++|+.+.. ...++||+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 568999999999999999999877 6999999999999999999988875 58999999986642 1256899999842
Q ss_pred ----------hhcccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHH
Q 019123 236 ----------VIEHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLI 305 (346)
Q Consensus 236 ----------~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (346)
......+...++..+.++|+|||.+++..... .+. .....
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~----------------------------~~~--~~~~~ 667 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR----------------------------GFK--MDEEG 667 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc----------------------------cCC--hhHHH
Confidence 11122345678889999999999988764321 111 12667
Q ss_pred HHHCCCcEEEEec
Q 019123 306 LQRASIDVKEMAG 318 (346)
Q Consensus 306 l~~aGF~~v~~~~ 318 (346)
+.++|+.+..++.
T Consensus 668 ~~~~g~~~~~i~~ 680 (702)
T PRK11783 668 LAKLGLKAEEITA 680 (702)
T ss_pred HHhCCCeEEEEec
Confidence 8889999877654
No 132
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.24 E-value=1.8e-10 Score=111.62 Aligned_cols=137 Identities=20% Similarity=0.233 Sum_probs=101.8
Q ss_pred CCCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc----ccCCceeEEEe
Q 019123 158 PFEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV----EEQRKFDAVIA 233 (346)
Q Consensus 158 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~----~~~~~fDlv~~ 233 (346)
..++.+|||+|||+|.++..++....+|+|+|+++.|++.+++++..+++ .+++|+.+|+.+.. ..+++||+|++
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~~~~~~~~~~D~vi~ 368 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVLPKQPWAGQIPDVLLL 368 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHHHHhcCCCCCEEEE
Confidence 34567999999999999999998888999999999999999999888776 68999999997631 23457999997
Q ss_pred cchhcccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcE
Q 019123 234 SEVIEHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDV 313 (346)
Q Consensus 234 ~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~ 313 (346)
.--=. .-...+++.+.+ |+|++++++.. ++.. ...-...|.+.||++
T Consensus 369 dPPr~--G~~~~~l~~l~~-l~~~~ivyvsc-~p~t-----------------------------lard~~~l~~~gy~~ 415 (431)
T TIGR00479 369 DPPRK--GCAAEVLRTIIE-LKPERIVYVSC-NPAT-----------------------------LARDLEFLCKEGYGI 415 (431)
T ss_pred CcCCC--CCCHHHHHHHHh-cCCCEEEEEcC-CHHH-----------------------------HHHHHHHHHHCCeeE
Confidence 43211 112456666554 88988777753 2211 111123456789999
Q ss_pred EEEeccccCCCCCce
Q 019123 314 KEMAGFVYNPLTGRW 328 (346)
Q Consensus 314 v~~~~~~~~~~~~~~ 328 (346)
..+..+.+.|.|.|.
T Consensus 416 ~~~~~~DmFP~T~Hv 430 (431)
T TIGR00479 416 TWVQPVDMFPHTAHV 430 (431)
T ss_pred EEEEEeccCCCCCCC
Confidence 999999999998763
No 133
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=1.4e-10 Score=105.44 Aligned_cols=122 Identities=16% Similarity=0.276 Sum_probs=92.1
Q ss_pred eEEEECCCCchhHHHHHHcCC--eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecch--hc
Q 019123 163 NIVDVGCGGGILSEPLARMGA--TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEV--IE 238 (346)
Q Consensus 163 ~vLDiG~G~G~~~~~l~~~~~--~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~--l~ 238 (346)
+|||+|||+|.++..++..+. +|+++|+|+.+++.|++++..+++ .++.++..|+..-. .++||+|+++-- -.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~--~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPL--RGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeeccccc--CCceeEEEeCCCCCCC
Confidence 899999999999999999865 999999999999999999999887 66667776654422 338999998531 00
Q ss_pred ---cc----------------CC----HHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCcccccc
Q 019123 239 ---HV----------------AD----PAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSS 295 (346)
Q Consensus 239 ---~~----------------~~----~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (346)
+. .| ...++.++.+.|+|||.+++..-
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g------------------------------ 239 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG------------------------------ 239 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC------------------------------
Confidence 00 01 23578888899999988887742
Q ss_pred CCCHHHHHHHHHHCC-CcEEEEe
Q 019123 296 FLTPEELVLILQRAS-IDVKEMA 317 (346)
Q Consensus 296 ~~~~~~~~~ll~~aG-F~~v~~~ 317 (346)
+-..+.+.+++.+.| |..+...
T Consensus 240 ~~q~~~v~~~~~~~~~~~~v~~~ 262 (280)
T COG2890 240 LTQGEAVKALFEDTGFFEIVETL 262 (280)
T ss_pred CCcHHHHHHHHHhcCCceEEEEE
Confidence 223478899999999 6655433
No 134
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.23 E-value=7.5e-11 Score=113.81 Aligned_cols=111 Identities=20% Similarity=0.242 Sum_probs=89.0
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHc---CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-ccCCceeEEE
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARM---GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-EEQRKFDAVI 232 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-~~~~~fDlv~ 232 (346)
.+.++.+|||+|||+|..+..++.. +.+|+++|+++.+++.+++++...++ .++.+.+.|+..++ ..+++||.|+
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~-~~v~~~~~Da~~l~~~~~~~fD~Vl 312 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL-SSIEIKIADAERLTEYVQDTFDRIL 312 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEECchhhhhhhhhccCCEEE
Confidence 4567889999999999999998876 45999999999999999999988877 46899999998775 3456899999
Q ss_pred ecc------hhcccCC----------------HHHHHHHHHHhcccCceEEEEecCcc
Q 019123 233 ASE------VIEHVAD----------------PAEFCKSLSALTVSEGATVISTINRS 268 (346)
Q Consensus 233 ~~~------~l~~~~~----------------~~~~l~~~~r~LkpgG~~~~~~~~~~ 268 (346)
+.. ++..-++ ..++|.++.+.|||||.++..+.+..
T Consensus 313 ~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 313 VDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred ECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 732 2222121 13579999999999999999987643
No 135
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.22 E-value=2.6e-10 Score=102.41 Aligned_cols=121 Identities=18% Similarity=0.188 Sum_probs=89.0
Q ss_pred CCeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc--cCCceeEEEecch
Q 019123 161 GLNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE--EQRKFDAVIASEV 236 (346)
Q Consensus 161 ~~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~--~~~~fDlv~~~~~ 236 (346)
+.+|||+|||+|.++..++.. +.+|+++|+|+.+++.+++++..++ ++++++|+.+... ..++||+|+++--
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~~~~fDlVv~NPP 162 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTALRGRVDILAANAP 162 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhcCCCEeEEEECCC
Confidence 458999999999999999875 4589999999999999999987654 4788888865321 1357999998631
Q ss_pred h------ccc----------------CC----HHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCc
Q 019123 237 I------EHV----------------AD----PAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGT 290 (346)
Q Consensus 237 l------~~~----------------~~----~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (346)
. ..+ .+ ...++..+.++|||||.+++.....
T Consensus 163 y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~----------------------- 219 (251)
T TIGR03704 163 YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER----------------------- 219 (251)
T ss_pred CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc-----------------------
Confidence 1 111 01 2367788889999999999775321
Q ss_pred cccccCCCHHHHHHHHHHCCCcEEE
Q 019123 291 HQWSSFLTPEELVLILQRASIDVKE 315 (346)
Q Consensus 291 ~~~~~~~~~~~~~~ll~~aGF~~v~ 315 (346)
...++..++++.||....
T Consensus 220 -------~~~~v~~~l~~~g~~~~~ 237 (251)
T TIGR03704 220 -------QAPLAVEAFARAGLIARV 237 (251)
T ss_pred -------hHHHHHHHHHHCCCCcee
Confidence 124677788888887643
No 136
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.22 E-value=1.1e-10 Score=105.67 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=87.6
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHc---CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEe
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARM---GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIA 233 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~ 233 (346)
.+.++.+|||+|||+|..+..++.. ...|+++|+++.+++.+++++...++ .++.++..|+..++...+.||+|++
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~~~~~fD~Vl~ 146 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTNFDGRVFGAAVPKFDAILL 146 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEecCCHHHhhhhccCCCEEEE
Confidence 4557889999999999999998875 34899999999999999999988877 5799999998877655567999996
Q ss_pred cc------hhcccCC----------------HHHHHHHHHHhcccCceEEEEecCc
Q 019123 234 SE------VIEHVAD----------------PAEFCKSLSALTVSEGATVISTINR 267 (346)
Q Consensus 234 ~~------~l~~~~~----------------~~~~l~~~~r~LkpgG~~~~~~~~~ 267 (346)
.- ++.+-++ ...+|+.+.+.|||||+++..+.+.
T Consensus 147 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 147 DAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred cCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 32 2221111 1358999999999999999887654
No 137
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.22 E-value=4.2e-11 Score=104.04 Aligned_cols=102 Identities=18% Similarity=0.224 Sum_probs=79.5
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHc-C--CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEe
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARM-G--ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIA 233 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~-~--~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~ 233 (346)
...++.+|||||||+|+.+..++.. + ..|+++|+.+..++.|++++...+. .|+.++++|......+...||.|++
T Consensus 69 ~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~gdg~~g~~~~apfD~I~v 147 (209)
T PF01135_consen 69 DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVVGDGSEGWPEEAPFDRIIV 147 (209)
T ss_dssp TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES-GGGTTGGG-SEEEEEE
T ss_pred hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEEcchhhccccCCCcCEEEE
Confidence 4668899999999999999999876 3 3799999999999999999988776 5899999998765555678999999
Q ss_pred cchhcccCCHHHHHHHHHHhcccCceEEEEec
Q 019123 234 SEVIEHVADPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 234 ~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
......++ ..+.+.||+||++++-.-
T Consensus 148 ~~a~~~ip------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 148 TAAVPEIP------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp SSBBSS--------HHHHHTEEEEEEEEEEES
T ss_pred eeccchHH------HHHHHhcCCCcEEEEEEc
Confidence 98775443 336667999999998653
No 138
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.21 E-value=9.4e-11 Score=100.76 Aligned_cols=98 Identities=13% Similarity=0.118 Sum_probs=73.2
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHcC---CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc--------ccC
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARMG---ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV--------EEQ 225 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~--------~~~ 225 (346)
...++.+|||+|||+|.++..++... .+|+++|+++.+ . . .++.++++|+.+.. .++
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~-----~-~~i~~~~~d~~~~~~~~~l~~~~~~ 96 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------P-----I-ENVDFIRGDFTDEEVLNKIRERVGD 96 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------c-----C-CCceEEEeeCCChhHHHHHHHHhCC
Confidence 44578899999999999999888763 379999999854 1 1 45788888886542 346
Q ss_pred CceeEEEecchh--------ccc---CCHHHHHHHHHHhcccCceEEEEecC
Q 019123 226 RKFDAVIASEVI--------EHV---ADPAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 226 ~~fDlv~~~~~l--------~~~---~~~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
++||+|++.... .|. .+...+++.++++|+|||.+++..+.
T Consensus 97 ~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 97 DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 689999986432 111 11357899999999999999997543
No 139
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.21 E-value=4.5e-11 Score=108.67 Aligned_cols=137 Identities=19% Similarity=0.207 Sum_probs=98.9
Q ss_pred HhhhCcCCCCCccccc--ChhHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHHHHHcCC-eEEEEcCChHH
Q 019123 118 DTWWDAEGPYKPLHAL--NPTRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKN 194 (346)
Q Consensus 118 ~~y~~~~~~~~~~~~~--n~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~ 194 (346)
+.|++....+.....| +..|..-.+..+.+. .....++.|||||||+|.++...+++|+ +|+++|.|. +
T Consensus 23 ~~Yf~sY~~~~iheeML~D~VRt~aYr~~i~~n-------~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-i 94 (346)
T KOG1499|consen 23 DYYFDSYAHFGIHEEMLKDSVRTLAYRNAILQN-------KHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-I 94 (346)
T ss_pred hhhhhhhhchHHHHHHHhhhhhHHHHHHHHhcc-------hhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-H
Confidence 4444444444444433 223444455444432 2345789999999999999999999998 899999864 6
Q ss_pred HHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhc---ccCCHHHHHHHHHHhcccCceEEE
Q 019123 195 IKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIE---HVADPAEFCKSLSALTVSEGATVI 262 (346)
Q Consensus 195 l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~---~~~~~~~~l~~~~r~LkpgG~~~~ 262 (346)
.+.+.+.+..+++...++++.+.++++.+|-.++|+|++-++=. +-.-...+|-.=-+.|+|||.++=
T Consensus 95 a~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 95 ADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred HHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 69999999999998889999999999877778999999854322 222334555555678999998864
No 140
>PRK03612 spermidine synthase; Provisional
Probab=99.20 E-value=1.7e-10 Score=113.97 Aligned_cols=145 Identities=16% Similarity=0.184 Sum_probs=101.0
Q ss_pred CCCeEEEECCCCchhHHHHHHcC--CeEEEEcCChHHHHHHHHh--hcc---CCC-CCceEEEEcCccccc-ccCCceeE
Q 019123 160 EGLNIVDVGCGGGILSEPLARMG--ATVTGIDAVEKNIKIARLH--ADL---DPE-TSTIEYCCTTAEKLV-EEQRKFDA 230 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~--~~v~giD~s~~~l~~a~~~--~~~---~~~-~~~v~~~~~d~~~l~-~~~~~fDl 230 (346)
++++|||||||+|..+..++++. .+|+++|+++++++.++++ +.. ... +++++++.+|+.+.. ..+++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 56799999999999999998874 4999999999999999984 221 111 368999999998743 23568999
Q ss_pred EEecchhcccCC-----HHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHH
Q 019123 231 VIASEVIEHVAD-----PAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLI 305 (346)
Q Consensus 231 v~~~~~l~~~~~-----~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (346)
|++.......+. ..++++.++++|||||.+++...++.... -...++.+.
T Consensus 377 Ii~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~-------------------------~~~~~i~~~ 431 (521)
T PRK03612 377 IIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAP-------------------------KAFWSIEAT 431 (521)
T ss_pred EEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccch-------------------------HHHHHHHHH
Confidence 999754332221 13689999999999999998754321100 011467788
Q ss_pred HHHCCCcEEEEeccccCCCCCceeec
Q 019123 306 LQRASIDVKEMAGFVYNPLTGRWSLS 331 (346)
Q Consensus 306 l~~aGF~~v~~~~~~~~~~~~~~~~~ 331 (346)
++++||.+..+.. +-|.-+.|++.
T Consensus 432 l~~~gf~v~~~~~--~vps~g~w~f~ 455 (521)
T PRK03612 432 LEAAGLATTPYHV--NVPSFGEWGFV 455 (521)
T ss_pred HHHcCCEEEEEEe--CCCCcchhHHH
Confidence 8999994333232 22444667644
No 141
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.20 E-value=9.5e-11 Score=104.09 Aligned_cols=103 Identities=15% Similarity=0.132 Sum_probs=84.9
Q ss_pred CCCCeEEEECCCCchhHHHHHHc---CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccc-c-c----cCCcee
Q 019123 159 FEGLNIVDVGCGGGILSEPLARM---GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKL-V-E----EQRKFD 229 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l-~-~----~~~~fD 229 (346)
.++.+|||||||+|..+..++.. ..+|+++|+++++++.|++++...++..+++++.+|+.+. + . +.++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 36789999999999988888764 3589999999999999999999999888899999999764 2 1 246899
Q ss_pred EEEecchhcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 230 AVIASEVIEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 230 lv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
+|++...- +....++..+.+.|+|||++++..
T Consensus 147 ~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 147 FAFVDADK---PNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEEECCCH---HHHHHHHHHHHHhcCCCeEEEEEc
Confidence 99875321 345678999999999999988754
No 142
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=1.5e-10 Score=103.90 Aligned_cols=119 Identities=22% Similarity=0.250 Sum_probs=92.3
Q ss_pred HHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHHHHHcCC--eEEEEcCChHHHHHHHHhhccCCCCCceEEE
Q 019123 137 RLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARMGA--TVTGIDAVEKNIKIARLHADLDPETSTIEYC 214 (346)
Q Consensus 137 r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~ 214 (346)
+.+.+.+.+.+.+ +...+.+|||+|||.|.++..+++... +++.+|+|..+++.+++++..+++ .+..++
T Consensus 142 ~lD~GS~lLl~~l-------~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~-~~~~v~ 213 (300)
T COG2813 142 KLDKGSRLLLETL-------PPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGV-ENTEVW 213 (300)
T ss_pred CcChHHHHHHHhC-------CccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCC-CccEEE
Confidence 3556666666654 333445999999999999999999854 999999999999999999998876 333566
Q ss_pred EcCcccccccCCceeEEEecchhcccCCH-----HHHHHHHHHhcccCceEEEEec
Q 019123 215 CTTAEKLVEEQRKFDAVIASEVIEHVADP-----AEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 215 ~~d~~~l~~~~~~fDlv~~~~~l~~~~~~-----~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
..|...-. ++ +||+|+|+--||.-.+. .++++.+.+.|++||.|.++.-
T Consensus 214 ~s~~~~~v-~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 214 ASNLYEPV-EG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred Eecccccc-cc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 66654433 23 89999999877644332 3799999999999999998864
No 143
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.20 E-value=2.2e-10 Score=98.79 Aligned_cols=102 Identities=22% Similarity=0.279 Sum_probs=81.6
Q ss_pred CeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccc-c--ccCCceeEEEecch
Q 019123 162 LNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKL-V--EEQRKFDAVIASEV 236 (346)
Q Consensus 162 ~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l-~--~~~~~fDlv~~~~~ 236 (346)
..+||||||.|.+...++.. ...++|+|+....+..+..++...++ .|+.++++|+..+ . ++++++|-|++.+
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F- 96 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINF- 96 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeC-
Confidence 38999999999999999987 45899999999999999888887777 8999999999874 2 3678999999854
Q ss_pred hcccCCH-------------HHHHHHHHHhcccCceEEEEecCcch
Q 019123 237 IEHVADP-------------AEFCKSLSALTVSEGATVISTINRSM 269 (346)
Q Consensus 237 l~~~~~~-------------~~~l~~~~r~LkpgG~~~~~~~~~~~ 269 (346)
+|| +.++..+.++|+|||.|.+.+-+...
T Consensus 97 ----PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y 138 (195)
T PF02390_consen 97 ----PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEY 138 (195)
T ss_dssp ---------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHH
T ss_pred ----CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHH
Confidence 554 37999999999999999998866543
No 144
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.20 E-value=1.8e-10 Score=102.12 Aligned_cols=128 Identities=18% Similarity=0.142 Sum_probs=100.0
Q ss_pred CCCCCCCeEEEECCCCchhHHHHHHc---CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccccc---CCcee
Q 019123 156 ARPFEGLNIVDVGCGGGILSEPLARM---GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEE---QRKFD 229 (346)
Q Consensus 156 ~~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~---~~~fD 229 (346)
....|+.+|||.|.|+|.++..|+.. ..+|+.+|+.++..+.|++++...++..++.+.+.|+.+..++ ++.+|
T Consensus 36 l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~D 115 (247)
T PF08704_consen 36 LDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFD 115 (247)
T ss_dssp TT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEE
T ss_pred cCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCccc
Confidence 46779999999999999999999976 3489999999999999999999999988999999999654332 36799
Q ss_pred EEEecchhcccCCHHHHHHHHHHhc-ccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHH
Q 019123 230 AVIASEVIEHVADPAEFCKSLSALT-VSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQR 308 (346)
Q Consensus 230 lv~~~~~l~~~~~~~~~l~~~~r~L-kpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 308 (346)
.|+. .+++|..++..+.++| ||||.+++..++..- .......|++
T Consensus 116 avfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQ-----------------------------v~~~~~~L~~ 161 (247)
T PF08704_consen 116 AVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPCIEQ-----------------------------VQKTVEALRE 161 (247)
T ss_dssp EEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESSHHH-----------------------------HHHHHHHHHH
T ss_pred EEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCCHHH-----------------------------HHHHHHHHHH
Confidence 9887 5689999999999999 899999998776311 1345567778
Q ss_pred CCCcEEEEe
Q 019123 309 ASIDVKEMA 317 (346)
Q Consensus 309 aGF~~v~~~ 317 (346)
.||..+++.
T Consensus 162 ~gf~~i~~~ 170 (247)
T PF08704_consen 162 HGFTDIETV 170 (247)
T ss_dssp TTEEEEEEE
T ss_pred CCCeeeEEE
Confidence 899887653
No 145
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=99.20 E-value=1.6e-09 Score=96.89 Aligned_cols=163 Identities=17% Similarity=0.224 Sum_probs=114.9
Q ss_pred HHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhcc----C--------
Q 019123 138 LAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADL----D-------- 205 (346)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~----~-------- 205 (346)
...+...+.+.+... .....+.+||--|||.|+++..++..|..+.|.|.|--|+-..+-.+.. .
T Consensus 37 ~~~I~~~L~~~~p~~---~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~ 113 (270)
T PF07942_consen 37 YSPILDELESLFPPA---GSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFV 113 (270)
T ss_pred HHHHHHHHHHhhccc---ccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecce
Confidence 344555555544211 1233567999999999999999999999999999999997554432221 0
Q ss_pred ---------------------------CCCCceEEEEcCcccccccC---CceeEEEecchhcccCCHHHHHHHHHHhcc
Q 019123 206 ---------------------------PETSTIEYCCTTAEKLVEEQ---RKFDAVIASEVIEHVADPAEFCKSLSALTV 255 (346)
Q Consensus 206 ---------------------------~~~~~v~~~~~d~~~l~~~~---~~fDlv~~~~~l~~~~~~~~~l~~~~r~Lk 255 (346)
....++....+|+.++..++ ++||+|++.+.|....+..++|+.++++||
T Consensus 114 ~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLk 193 (270)
T PF07942_consen 114 HSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLK 193 (270)
T ss_pred ecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhc
Confidence 01246778888887775444 799999999999999999999999999999
Q ss_pred cCceEEEEecCcchHHHHHHHHHHHHHhhhcCC-CccccccCCCHHHHHHHHHHCCCcEEEEec
Q 019123 256 SEGATVISTINRSMRAYATAIIAAEHILHWLPK-GTHQWSSFLTPEELVLILQRASIDVKEMAG 318 (346)
Q Consensus 256 pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~ 318 (346)
|||+++=..|-. ..+-+. ...+..--++.+|+..+++..||+++..+.
T Consensus 194 pgG~WIN~GPLl---------------yh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 194 PGGYWINFGPLL---------------YHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred cCCEEEecCCcc---------------ccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 999666443311 000011 001112347899999999999999987554
No 146
>PRK00811 spermidine synthase; Provisional
Probab=99.19 E-value=1.3e-10 Score=106.06 Aligned_cols=107 Identities=16% Similarity=0.201 Sum_probs=83.6
Q ss_pred CCCeEEEECCCCchhHHHHHHc-C-CeEEEEcCChHHHHHHHHhhccCC----CCCceEEEEcCccccc-ccCCceeEEE
Q 019123 160 EGLNIVDVGCGGGILSEPLARM-G-ATVTGIDAVEKNIKIARLHADLDP----ETSTIEYCCTTAEKLV-EEQRKFDAVI 232 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~-~-~~v~giD~s~~~l~~a~~~~~~~~----~~~~v~~~~~d~~~l~-~~~~~fDlv~ 232 (346)
.+.+||+||||+|..+..++.+ + .+|+++|+++.+++.+++.+.... -+++++++.+|+.... ...++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 5679999999999999999887 3 389999999999999999875421 1468999999987653 2467899999
Q ss_pred ecchhcccCC----HHHHHHHHHHhcccCceEEEEecC
Q 019123 233 ASEVIEHVAD----PAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 233 ~~~~l~~~~~----~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
+...-.+.+. ..++++.+++.|+|||++++...+
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 8643222111 257889999999999999886443
No 147
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.18 E-value=6.8e-11 Score=105.63 Aligned_cols=109 Identities=18% Similarity=0.180 Sum_probs=86.7
Q ss_pred CCCeEEEECCCCchhHHHHHHcCC-eEEEEcCChHHHHHHHHhhccCCC-----CCceEEEEcCcccc------cccCCc
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIKIARLHADLDPE-----TSTIEYCCTTAEKL------VEEQRK 227 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~-----~~~v~~~~~d~~~l------~~~~~~ 227 (346)
++..+||+|||.|.-++.+...|. .++|+||+...++.|+++...-.- .-.+.|+.+|.... ++++.+
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 567899999999998888877776 899999999999999998764211 12478999997442 234555
Q ss_pred eeEEEecchhccc-CC---HHHHHHHHHHhcccCceEEEEecCcc
Q 019123 228 FDAVIASEVIEHV-AD---PAEFCKSLSALTVSEGATVISTINRS 268 (346)
Q Consensus 228 fDlv~~~~~l~~~-~~---~~~~l~~~~r~LkpgG~~~~~~~~~~ 268 (346)
||+|-|-+++|+. .+ ..-+|+++.+.|||||+|+-+.++..
T Consensus 197 fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 197 FDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred cceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 9999999999875 33 34589999999999999999988764
No 148
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.17 E-value=3.8e-10 Score=95.33 Aligned_cols=102 Identities=16% Similarity=0.133 Sum_probs=78.9
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecch
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEV 236 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~ 236 (346)
...++.+|||||||+|.++..+++.+.+|+++|+++.+++.+++++... .+++++.+|+.+++.++..||+|+++.-
T Consensus 10 ~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~---~~v~ii~~D~~~~~~~~~~~d~vi~n~P 86 (169)
T smart00650 10 NLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA---DNLTVIHGDALKFDLPKLQPYKVVGNLP 86 (169)
T ss_pred CCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC---CCEEEEECchhcCCccccCCCEEEECCC
Confidence 4456779999999999999999999889999999999999999887542 5799999999998876667999988654
Q ss_pred hcccCCHHHHHHHHHHh--cccCceEEEEe
Q 019123 237 IEHVADPAEFCKSLSAL--TVSEGATVIST 264 (346)
Q Consensus 237 l~~~~~~~~~l~~~~r~--LkpgG~~~~~~ 264 (346)
. +.. ...+..+... +.++|.|++..
T Consensus 87 y-~~~--~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 87 Y-NIS--TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred c-ccH--HHHHHHHHhcCCCcceEEEEEEH
Confidence 3 332 2334444332 34778877764
No 149
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.14 E-value=1.5e-09 Score=103.02 Aligned_cols=134 Identities=16% Similarity=0.195 Sum_probs=100.7
Q ss_pred CCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc-cCCceeEEEecchhc
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE-EQRKFDAVIASEVIE 238 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~fDlv~~~~~l~ 238 (346)
++.+|||+|||+|.++..++..+.+|+|+|+++.+++.+++++..+++ .++.|+++|+.+... ..++||+|++.---.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~-~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGL-DNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 457999999999999999998888999999999999999999988877 489999999976532 124699998853211
Q ss_pred ccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEEec
Q 019123 239 HVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMAG 318 (346)
Q Consensus 239 ~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~ 318 (346)
. -...+++.+. .++|++++++.. ++.. + ..++..+ .||++..+..
T Consensus 312 G--~~~~~l~~l~-~~~p~~ivyvsc-~p~T--l--------------------------aRDl~~L---~gy~l~~~~~ 356 (374)
T TIGR02085 312 G--IGKELCDYLS-QMAPKFILYSSC-NAQT--M--------------------------AKDIAEL---SGYQIERVQL 356 (374)
T ss_pred C--CcHHHHHHHH-hcCCCeEEEEEe-CHHH--H--------------------------HHHHHHh---cCceEEEEEE
Confidence 1 1234555554 478999888875 2211 0 0233333 6999999999
Q ss_pred cccCCCCCcee
Q 019123 319 FVYNPLTGRWS 329 (346)
Q Consensus 319 ~~~~~~~~~~~ 329 (346)
+.+.|.|.|..
T Consensus 357 ~DmFPqT~HvE 367 (374)
T TIGR02085 357 FDMFPHTSHYE 367 (374)
T ss_pred eccCCCCCcEE
Confidence 99999998743
No 150
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.13 E-value=2.5e-10 Score=97.66 Aligned_cols=140 Identities=18% Similarity=0.193 Sum_probs=103.1
Q ss_pred CCCCCCCeEEEECCCCchhHHHHHHcCC-eEEEEcCChHHHHHHHHhhccCCC-CCceEEEEcCccccc--ccCCceeEE
Q 019123 156 ARPFEGLNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIKIARLHADLDPE-TSTIEYCCTTAEKLV--EEQRKFDAV 231 (346)
Q Consensus 156 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~-~~~v~~~~~d~~~l~--~~~~~fDlv 231 (346)
..+..+.+|||.+.|-|..++..+++|+ .|+.++.++..|+.|.-+-=..++ ..+++++.+|+.++. ++|.+||+|
T Consensus 130 V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 130 VKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred eccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE
Confidence 3556789999999999999999999999 999999999999887644211122 346899999998764 578999999
Q ss_pred Eec---chhcccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHH
Q 019123 232 IAS---EVIEHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQR 308 (346)
Q Consensus 232 ~~~---~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 308 (346)
+-. +.+..----+++.++++|+|||||.++--+-++.. -++..--+..+.+.|++
T Consensus 210 iHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~----------------------ryrG~d~~~gVa~RLr~ 267 (287)
T COG2521 210 IHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGK----------------------RYRGLDLPKGVAERLRR 267 (287)
T ss_pred eeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc----------------------ccccCChhHHHHHHHHh
Confidence 852 12211001257999999999999998866544321 11223345788999999
Q ss_pred CCCcEEEEe
Q 019123 309 ASIDVKEMA 317 (346)
Q Consensus 309 aGF~~v~~~ 317 (346)
+||+++...
T Consensus 268 vGF~~v~~~ 276 (287)
T COG2521 268 VGFEVVKKV 276 (287)
T ss_pred cCceeeeee
Confidence 999988644
No 151
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.11 E-value=2e-09 Score=94.43 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=105.5
Q ss_pred CeEEEECCCCchhHHHHHHcCC--eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc---ccCCceeEEEecch
Q 019123 162 LNIVDVGCGGGILSEPLARMGA--TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV---EEQRKFDAVIASEV 236 (346)
Q Consensus 162 ~~vLDiG~G~G~~~~~l~~~~~--~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~---~~~~~fDlv~~~~~ 236 (346)
..+||||||.|.+...+|.... .++|||+....+..+.+++...++ .|+.+++.|+..+- +++++.|-|.+.+-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l-~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL-KNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC-CcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 5899999999999999999854 799999999999999999988887 39999999997763 35669999998653
Q ss_pred hcccCC--------HHHHHHHHHHhcccCceEEEEecCcchHHH-HHHHHHHHHHhhhcCCCcc---ccccCCCHHHHHH
Q 019123 237 IEHVAD--------PAEFCKSLSALTVSEGATVISTINRSMRAY-ATAIIAAEHILHWLPKGTH---QWSSFLTPEELVL 304 (346)
Q Consensus 237 l~~~~~--------~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 304 (346)
-=+... .+.+++.+.++|||||.|.+.+-+.....+ ............+.....+ .........+++.
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~yE~ 208 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEHPPFLKFESEDLHYNLPPPDNNPVTEYEQ 208 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhcchhhhccccccccccccccCCCCcHHHH
Confidence 322211 137999999999999999999866544333 1111111111111111111 0111134467777
Q ss_pred HHHHCCCcEEEE
Q 019123 305 ILQRASIDVKEM 316 (346)
Q Consensus 305 ll~~aGF~~v~~ 316 (346)
-....|..+..+
T Consensus 209 k~~~~g~~i~~l 220 (227)
T COG0220 209 KFRRLGHPVYDL 220 (227)
T ss_pred HHHhCCCceEEE
Confidence 777888777553
No 152
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=99.08 E-value=1.2e-09 Score=93.50 Aligned_cols=118 Identities=19% Similarity=0.154 Sum_probs=93.1
Q ss_pred CCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc---cCCceeEEEecchh
Q 019123 161 GLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE---EQRKFDAVIASEVI 237 (346)
Q Consensus 161 ~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~---~~~~fDlv~~~~~l 237 (346)
..++|||||=+......... -.+|+.||+++ ..-.+.+.|+.+.|. +.++||+|.++.+|
T Consensus 52 ~lrlLEVGals~~N~~s~~~-~fdvt~IDLns----------------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVL 114 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTSG-WFDVTRIDLNS----------------QHPGILQQDFMERPLPKNESEKFDVISLSLVL 114 (219)
T ss_pred cceEEeecccCCCCcccccC-ceeeEEeecCC----------------CCCCceeeccccCCCCCCcccceeEEEEEEEE
Confidence 47999999987765544321 23799999987 123367778877765 46799999999999
Q ss_pred cccCCHH---HHHHHHHHhcccCce-----EEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHC
Q 019123 238 EHVADPA---EFCKSLSALTVSEGA-----TVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRA 309 (346)
Q Consensus 238 ~~~~~~~---~~l~~~~r~LkpgG~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 309 (346)
.+++++. ++++.+++.|+|+|. |+++.+.+.. ...++.+.+.|..+++..
T Consensus 115 NfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv----------------------~NSRy~~~~~l~~im~~L 172 (219)
T PF11968_consen 115 NFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCV----------------------TNSRYMTEERLREIMESL 172 (219)
T ss_pred eeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHh----------------------hcccccCHHHHHHHHHhC
Confidence 9999986 689999999999999 8888765432 124789999999999999
Q ss_pred CCcEEEEe
Q 019123 310 SIDVKEMA 317 (346)
Q Consensus 310 GF~~v~~~ 317 (346)
||..++.+
T Consensus 173 Gf~~~~~~ 180 (219)
T PF11968_consen 173 GFTRVKYK 180 (219)
T ss_pred CcEEEEEE
Confidence 99998764
No 153
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=7.8e-09 Score=86.31 Aligned_cols=148 Identities=22% Similarity=0.215 Sum_probs=97.9
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHcCC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecc
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASE 235 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~ 235 (346)
....+..|||+|||||.+++..+-.|+ +|+++|+++++++.++++... +..++.|+++|+.++. ..+|.|+++-
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~---~~~dtvimNP 116 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR---GKFDTVIMNP 116 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC---CccceEEECC
Confidence 555788999999999999999999986 899999999999999999887 3378999999998874 4688888753
Q ss_pred hh----cccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCC
Q 019123 236 VI----EHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASI 311 (346)
Q Consensus 236 ~l----~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF 311 (346)
-+ .| .|. .+|..+.++- -+ -+++...-+.+-++...+++|+
T Consensus 117 PFG~~~rh-aDr-~Fl~~Ale~s----~v-----------------------------VYsiH~a~~~~f~~~~~~~~G~ 161 (198)
T COG2263 117 PFGSQRRH-ADR-PFLLKALEIS----DV-----------------------------VYSIHKAGSRDFVEKFAADLGG 161 (198)
T ss_pred CCcccccc-CCH-HHHHHHHHhh----he-----------------------------EEEeeccccHHHHHHHHHhcCC
Confidence 22 22 233 2333332221 01 1122223366778899999999
Q ss_pred cEEEEecccc-CCCCCcee-eccCCceeEEEEeee
Q 019123 312 DVKEMAGFVY-NPLTGRWS-LSDDISVNFIAFGTK 344 (346)
Q Consensus 312 ~~v~~~~~~~-~~~~~~~~-~~~~~~~~~l~~~rk 344 (346)
.+.......+ -|.+-.|+ +......+.|....|
T Consensus 162 ~v~~~~~~~~~iP~~y~fH~k~~~~I~v~i~r~~k 196 (198)
T COG2263 162 TVTHIERARFPIPRTYPFHRKRVRRIEVDIFRFEK 196 (198)
T ss_pred eEEEEEEEEEecCccCchhhheeeeeeEEEEEEEe
Confidence 9876543332 23332333 222344455555444
No 154
>PHA03412 putative methyltransferase; Provisional
Probab=99.07 E-value=8.8e-10 Score=96.26 Aligned_cols=145 Identities=14% Similarity=0.168 Sum_probs=96.2
Q ss_pred CCeEEEECCCCchhHHHHHHc-----CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecc
Q 019123 161 GLNIVDVGCGGGILSEPLARM-----GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASE 235 (346)
Q Consensus 161 ~~~vLDiG~G~G~~~~~l~~~-----~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~ 235 (346)
+.+|||+|||+|.++..++.+ ..+|+++|+++.+++.++++. .++.++..|+..... +++||+|+++-
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~------~~~~~~~~D~~~~~~-~~~FDlIIsNP 122 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV------PEATWINADALTTEF-DTLFDMAISNP 122 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc------cCCEEEEcchhcccc-cCCccEEEECC
Confidence 579999999999999988764 358999999999999999775 357899999976654 56899999964
Q ss_pred hhccc--C---------C-HHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCcccc--ccCCCHHH
Q 019123 236 VIEHV--A---------D-PAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQW--SSFLTPEE 301 (346)
Q Consensus 236 ~l~~~--~---------~-~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 301 (346)
-..-. . . ...++..+.+++++|+.++=..+- .+...+.+.+ ..-.+..+
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~-----------------~~~y~~~~~~~~~~~~~~~~ 185 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSA-----------------NFRYSGTHYFRQDESTTSSK 185 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcccc-----------------cCcccCccceeeccCcccHH
Confidence 33211 1 1 345888888877777652211110 0000111111 23345677
Q ss_pred HHHHHHHCCCcEEEEeccccCCCCCcee
Q 019123 302 LVLILQRASIDVKEMAGFVYNPLTGRWS 329 (346)
Q Consensus 302 ~~~ll~~aGF~~v~~~~~~~~~~~~~~~ 329 (346)
...+.++.|+..-.--++....+...|+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (241)
T PHA03412 186 CKKFLDETGLEMNPGCGIDTGYYLEDWK 213 (241)
T ss_pred HHHHHHhcCeeecCCCCccceeehhhcc
Confidence 8889999998765434444455555564
No 155
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.07 E-value=2.1e-09 Score=92.74 Aligned_cols=105 Identities=11% Similarity=-0.015 Sum_probs=78.5
Q ss_pred CCCeEEEECCCCchhHHHHHHcC-CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-ccCCceeEEEecchh
Q 019123 160 EGLNIVDVGCGGGILSEPLARMG-ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-EEQRKFDAVIASEVI 237 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~-~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-~~~~~fDlv~~~~~l 237 (346)
++.+|||+|||+|.+++.++..+ .+|+++|+++.+++.+++++...++ .++.++++|+.+.. ....+||+|++.--.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA-GNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 56799999999999999765554 5999999999999999999888776 47999999987642 234579999986542
Q ss_pred cccCCHHHHHHHHHH--hcccCceEEEEecC
Q 019123 238 EHVADPAEFCKSLSA--LTVSEGATVISTIN 266 (346)
Q Consensus 238 ~~~~~~~~~l~~~~r--~LkpgG~~~~~~~~ 266 (346)
. -.-...++..+.. .|+|+|++++....
T Consensus 132 ~-~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 132 R-KGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred C-CChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 2 1113345555544 37899988887543
No 156
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.07 E-value=3.1e-09 Score=90.75 Aligned_cols=157 Identities=10% Similarity=0.025 Sum_probs=102.2
Q ss_pred eEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc--c------cCCceeEEE
Q 019123 163 NIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV--E------EQRKFDAVI 232 (346)
Q Consensus 163 ~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~--~------~~~~fDlv~ 232 (346)
+|||||||||..+.+++.+ .....-.|+++..+...+..+...++..-..-+..|+...+ . ..++||+|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 6999999999999999987 45788889998887666655554443111122234444332 1 246899999
Q ss_pred ecchhcccCC--HHHHHHHHHHhcccCceEEEEecCcchHHH-HHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHC
Q 019123 233 ASEVIEHVAD--PAEFCKSLSALTVSEGATVISTINRSMRAY-ATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRA 309 (346)
Q Consensus 233 ~~~~l~~~~~--~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 309 (346)
|.+++|-.+- .+.+++.+.++|++||.|++-.+-.....+ .......+. ++...... .-+.+.+++..+..++
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~---sLr~rdp~-~GiRD~e~v~~lA~~~ 183 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDA---SLRSRDPE-WGIRDIEDVEALAAAH 183 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHH---HHhcCCCC-cCccCHHHHHHHHHHC
Confidence 9999976653 457999999999999999996552211110 011111111 11111111 2356778999999999
Q ss_pred CCcEEEEeccccCC
Q 019123 310 SIDVKEMAGFVYNP 323 (346)
Q Consensus 310 GF~~v~~~~~~~~~ 323 (346)
|++.++...++-+.
T Consensus 184 GL~l~~~~~MPANN 197 (204)
T PF06080_consen 184 GLELEEDIDMPANN 197 (204)
T ss_pred CCccCcccccCCCC
Confidence 99988766665443
No 157
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.06 E-value=6.7e-09 Score=95.74 Aligned_cols=182 Identities=14% Similarity=0.144 Sum_probs=108.5
Q ss_pred ChhHHHHHHHHHhhhhccCC-CCCCCCCCCeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccC-CCCC
Q 019123 134 NPTRLAFIRSTLCRHFRKDP-YSARPFEGLNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLD-PETS 209 (346)
Q Consensus 134 n~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~-~~~~ 209 (346)
.+.|..|+. .+..++.... ...+.....+|||||||+|.+...++.. +.+++|+|+++.+++.|++++..+ ++..
T Consensus 88 iP~R~~Yi~-~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~ 166 (321)
T PRK11727 88 IPGRADYIH-HLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNG 166 (321)
T ss_pred CCcHHHHHH-HHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcC
Confidence 556788774 3344432211 1122235679999999999888777664 679999999999999999999998 6777
Q ss_pred ceEEEE-cCccccc----ccCCceeEEEecchhcccCC-----HHHHHHHH----------------HHhcccCceEEEE
Q 019123 210 TIEYCC-TTAEKLV----EEQRKFDAVIASEVIEHVAD-----PAEFCKSL----------------SALTVSEGATVIS 263 (346)
Q Consensus 210 ~v~~~~-~d~~~l~----~~~~~fDlv~~~~~l~~~~~-----~~~~l~~~----------------~r~LkpgG~~~~~ 263 (346)
++.+.. .+...+. .+.+.||+|+|+--++.-.. ...-.+.+ .+++-+||.+.+.
T Consensus 167 ~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi 246 (321)
T PRK11727 167 AIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFI 246 (321)
T ss_pred cEEEEEccchhhhhhcccccCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeee
Confidence 888864 3433322 24668999999864432211 11122222 2334567776554
Q ss_pred ecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEEeccccCCCC
Q 019123 264 TINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMAGFVYNPLT 325 (346)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~ 325 (346)
..-... ..... ....|+. .....--+...+...|++.|...+.+..+..+.-.
T Consensus 247 ~~mi~e-----S~~~~-~~~gwft---smv~kk~~l~~l~~~L~~~~~~~~~~~e~~qG~~~ 299 (321)
T PRK11727 247 KRMIEE-----SKAFA-KQVLWFT---SLVSKKENLPPLYRALKKVGAVEVKTIEMAQGQKQ 299 (321)
T ss_pred hHhhHH-----HHHHH-hhCcEEE---EEeeccCCHHHHHHHHHHcCCceEEEEEEeCCCee
Confidence 322111 00000 0011110 01123347889999999999988777666555433
No 158
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.06 E-value=5.7e-10 Score=95.93 Aligned_cols=105 Identities=16% Similarity=0.182 Sum_probs=71.3
Q ss_pred CCCeEEEECCCCc----hhHHHHHHc-----C--CeEEEEcCChHHHHHHHHhhcc-------------------CC---
Q 019123 160 EGLNIVDVGCGGG----ILSEPLARM-----G--ATVTGIDAVEKNIKIARLHADL-------------------DP--- 206 (346)
Q Consensus 160 ~~~~vLDiG~G~G----~~~~~l~~~-----~--~~v~giD~s~~~l~~a~~~~~~-------------------~~--- 206 (346)
...+|+.+||++| .+++.+.+. + .+++|+|+|+.+|+.|++-.-. .+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 5679999999999 456666662 2 4899999999999999862111 01
Q ss_pred -----CCCceEEEEcCcccccccCCceeEEEecchhcccCCH--HHHHHHHHHhcccCceEEEEe
Q 019123 207 -----ETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEHVADP--AEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 207 -----~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~~~~~--~~~l~~~~r~LkpgG~~~~~~ 264 (346)
+-.+|.|...|+.+.+.+.+.||+|+|.++|.++... ..+++.+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 1246899999998844456789999999999999764 579999999999999999874
No 159
>PLN02672 methionine S-methyltransferase
Probab=99.05 E-value=3.3e-09 Score=110.92 Aligned_cols=105 Identities=16% Similarity=0.271 Sum_probs=78.8
Q ss_pred CCCeEEEECCCCchhHHHHHHcC--CeEEEEcCChHHHHHHHHhhccCCC---------------CCceEEEEcCccccc
Q 019123 160 EGLNIVDVGCGGGILSEPLARMG--ATVTGIDAVEKNIKIARLHADLDPE---------------TSTIEYCCTTAEKLV 222 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~--~~v~giD~s~~~l~~a~~~~~~~~~---------------~~~v~~~~~d~~~l~ 222 (346)
++.+|||+|||+|.+++.++... .+|+++|+|+.+++.|++++..+++ ..+++|+++|+.+..
T Consensus 118 ~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 118 RDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 35689999999999999998863 5899999999999999999876532 247999999987643
Q ss_pred cc-CCceeEEEecch--------------hccc--------------------CC----HHHHHHHHHHhcccCceEEEE
Q 019123 223 EE-QRKFDAVIASEV--------------IEHV--------------------AD----PAEFCKSLSALTVSEGATVIS 263 (346)
Q Consensus 223 ~~-~~~fDlv~~~~~--------------l~~~--------------------~~----~~~~l~~~~r~LkpgG~~~~~ 263 (346)
.. ...||+|+++-- ..|- .| ...++.++.++|+|||.+++.
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 21 236999998531 1110 11 145778888899999988765
Q ss_pred e
Q 019123 264 T 264 (346)
Q Consensus 264 ~ 264 (346)
.
T Consensus 278 i 278 (1082)
T PLN02672 278 M 278 (1082)
T ss_pred E
Confidence 4
No 160
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.05 E-value=9.5e-10 Score=95.31 Aligned_cols=103 Identities=18% Similarity=0.166 Sum_probs=85.6
Q ss_pred CCCeEEEECCCCchhHHHHHHc---CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccc-c-c----cCCceeE
Q 019123 160 EGLNIVDVGCGGGILSEPLARM---GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKL-V-E----EQRKFDA 230 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l-~-~----~~~~fDl 230 (346)
.+.+||||||++|..+..++.. +.+|+.+|++++..+.|++.+...++..+|+++.+|+.+. + . +.+.||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 6789999999999999999975 5699999999999999999999988888999999999663 2 1 1358999
Q ss_pred EEecchhcccCCHHHHHHHHHHhcccCceEEEEec
Q 019123 231 VIASEVIEHVADPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 231 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
|++-..= .+...++..+.+.|+|||++++...
T Consensus 125 VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 125 VFIDADK---RNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp EEEESTG---GGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred EEEcccc---cchhhHHHHHhhhccCCeEEEEccc
Confidence 9986532 3567888999999999999998754
No 161
>PLN02366 spermidine synthase
Probab=99.04 E-value=1.7e-09 Score=99.47 Aligned_cols=106 Identities=12% Similarity=0.116 Sum_probs=82.3
Q ss_pred CCCeEEEECCCCchhHHHHHHcC--CeEEEEcCChHHHHHHHHhhccC--CC-CCceEEEEcCccccc--ccCCceeEEE
Q 019123 160 EGLNIVDVGCGGGILSEPLARMG--ATVTGIDAVEKNIKIARLHADLD--PE-TSTIEYCCTTAEKLV--EEQRKFDAVI 232 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~--~~v~giD~s~~~l~~a~~~~~~~--~~-~~~v~~~~~d~~~l~--~~~~~fDlv~ 232 (346)
.+.+||+||||.|..+..++++. .+|+.+|+++.+++.+++.+... ++ +++++++.+|+...- .++++||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 56899999999999999999873 38999999999999999987542 12 468999999986543 2356899999
Q ss_pred ecchhcccCC----HHHHHHHHHHhcccCceEEEEec
Q 019123 233 ASEVIEHVAD----PAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 233 ~~~~l~~~~~----~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
+...-.+.+. ..++++.++++|+|||++++..-
T Consensus 171 ~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 171 VDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred EcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 8543322221 24689999999999999987543
No 162
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.03 E-value=1.8e-09 Score=104.24 Aligned_cols=102 Identities=13% Similarity=0.158 Sum_probs=79.0
Q ss_pred CCCeEEEECCCCchhHHHHHHcC------CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEe
Q 019123 160 EGLNIVDVGCGGGILSEPLARMG------ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIA 233 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~------~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~ 233 (346)
.+..|||||||+|.++...++.+ .+|+++|-|+.+....++++..+++.++|+++.+|++++..+ .++|+|++
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVS 264 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVS 264 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEE
Confidence 35789999999999998887764 389999999999988888777788878999999999998764 48999997
Q ss_pred c--chhcccCCHHHHHHHHHHhcccCceEEE
Q 019123 234 S--EVIEHVADPAEFCKSLSALTVSEGATVI 262 (346)
Q Consensus 234 ~--~~l~~~~~~~~~l~~~~r~LkpgG~~~~ 262 (346)
= +.+..-.-.+++|..+.|.|||||+++=
T Consensus 265 ElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 265 ELLGSFGDNELSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp ---BTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred eccCCccccccCHHHHHHHHhhcCCCCEEeC
Confidence 3 2222223456789999999999998764
No 163
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.03 E-value=1.7e-09 Score=91.65 Aligned_cols=108 Identities=19% Similarity=0.281 Sum_probs=76.6
Q ss_pred CCCCCeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCC--CCCceEEEEcCccccc----ccCCcee
Q 019123 158 PFEGLNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDP--ETSTIEYCCTTAEKLV----EEQRKFD 229 (346)
Q Consensus 158 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~--~~~~v~~~~~d~~~l~----~~~~~fD 229 (346)
...+.+|||+|||+|..++.++.. ..+|+.+|.++ .++..+.++..++ ...++.+...|..+.. ....+||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 457789999999999999999988 56999999998 9999999888765 4577888888875421 2456899
Q ss_pred EEEecchhcccCCHHHHHHHHHHhcccCceEEEEecC
Q 019123 230 AVIASEVIEHVADPAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 230 lv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
+|+.+.+++.-...+.+++.+.++|+|+|.+++....
T Consensus 122 ~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 122 VILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp EEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred EEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 9999999998878889999999999999987776553
No 164
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.02 E-value=2.2e-09 Score=97.57 Aligned_cols=107 Identities=16% Similarity=0.194 Sum_probs=81.2
Q ss_pred CCCeEEEECCCCchhHHHHHHcC--CeEEEEcCChHHHHHHHHhhccCC--C-CCceEEEEcCccccc-ccCCceeEEEe
Q 019123 160 EGLNIVDVGCGGGILSEPLARMG--ATVTGIDAVEKNIKIARLHADLDP--E-TSTIEYCCTTAEKLV-EEQRKFDAVIA 233 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~--~~v~giD~s~~~l~~a~~~~~~~~--~-~~~v~~~~~d~~~l~-~~~~~fDlv~~ 233 (346)
.+.+||+||||+|.++..++.+. .+|+++|+++.+++.+++.+.... . .++++++.+|+...- ...++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 44599999999999999988874 489999999999999998764421 1 357888888876532 23568999998
Q ss_pred cchhcccC--C--HHHHHHHHHHhcccCceEEEEecC
Q 019123 234 SEVIEHVA--D--PAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 234 ~~~l~~~~--~--~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
.......+ + ..++++.+.+.|+|||++++...+
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSES 188 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 65422111 1 357899999999999999987443
No 165
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.01 E-value=5.9e-09 Score=89.86 Aligned_cols=150 Identities=22% Similarity=0.294 Sum_probs=95.1
Q ss_pred CCCCCeEEEECCCCchhHHHHHHc-CC-eEEEEcCChHHHHHHHHhhccCC-----------------------------
Q 019123 158 PFEGLNIVDVGCGGGILSEPLARM-GA-TVTGIDAVEKNIKIARLHADLDP----------------------------- 206 (346)
Q Consensus 158 ~~~~~~vLDiG~G~G~~~~~l~~~-~~-~v~giD~s~~~l~~a~~~~~~~~----------------------------- 206 (346)
...+..+|||||..|.++..++.. ++ .|.|+||++..++.|++.+...-
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 346789999999999999999987 44 79999999999999998764320
Q ss_pred -----CCCceEEEEcCccc-----ccccCCceeEEEecchhcc--cC--C--HHHHHHHHHHhcccCceEEEEecCcchH
Q 019123 207 -----ETSTIEYCCTTAEK-----LVEEQRKFDAVIASEVIEH--VA--D--PAEFCKSLSALTVSEGATVISTINRSMR 270 (346)
Q Consensus 207 -----~~~~v~~~~~d~~~-----l~~~~~~fDlv~~~~~l~~--~~--~--~~~~l~~~~r~LkpgG~~~~~~~~~~~~ 270 (346)
.+.++.|...+..- +......||+|+|.-+-.+ +. | ...+++.++++|.|||+|++.---.
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpW--- 212 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPW--- 212 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCch---
Confidence 01122222222110 1123568999998654432 22 2 5689999999999999988763221
Q ss_pred HHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHC--CCcEEE
Q 019123 271 AYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRA--SIDVKE 315 (346)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a--GF~~v~ 315 (346)
..+......+.. +... ...-++.++.+..++.+. ||+-+.
T Consensus 213 --ksY~kaar~~e~-~~~n--y~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 213 --KSYKKAARRSEK-LAAN--YFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred --HHHHHHHHHHHH-hhcC--ccceecCHHHHHhhhhhhhhheeeec
Confidence 111111111111 1111 123468899999999988 565543
No 166
>PLN02476 O-methyltransferase
Probab=98.99 E-value=2.6e-09 Score=96.24 Aligned_cols=103 Identities=14% Similarity=0.151 Sum_probs=85.9
Q ss_pred CCCCeEEEECCCCchhHHHHHHc---CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccc-cc-----cCCcee
Q 019123 159 FEGLNIVDVGCGGGILSEPLARM---GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKL-VE-----EQRKFD 229 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l-~~-----~~~~fD 229 (346)
.++++|||||+|+|..+..++.. +..|+.+|.++++++.|++.+...++..+++++.+|+.+. +. ..++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 46789999999999999999874 4479999999999999999999999988999999998653 21 136899
Q ss_pred EEEecchhcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 230 AVIASEVIEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 230 lv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
+|++-.- -.+...++..+.+.|+|||.+++..
T Consensus 197 ~VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 197 FAFVDAD---KRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EEEECCC---HHHHHHHHHHHHHhcCCCcEEEEec
Confidence 9998642 1345688999999999999998864
No 167
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.98 E-value=1.3e-09 Score=99.02 Aligned_cols=104 Identities=13% Similarity=0.089 Sum_probs=81.3
Q ss_pred CCeEEEECCCCc----hhHHHHHHc------CCeEEEEcCChHHHHHHHHhhcc-----------------------CC-
Q 019123 161 GLNIVDVGCGGG----ILSEPLARM------GATVTGIDAVEKNIKIARLHADL-----------------------DP- 206 (346)
Q Consensus 161 ~~~vLDiG~G~G----~~~~~l~~~------~~~v~giD~s~~~l~~a~~~~~~-----------------------~~- 206 (346)
..+|+..||+|| .+++.+.+. ..+|+|+|||+.+|+.|++-.-. .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 479999999999 456666553 24899999999999999875211 00
Q ss_pred ------CCCceEEEEcCcccccc-cCCceeEEEecchhcccCC--HHHHHHHHHHhcccCceEEEEe
Q 019123 207 ------ETSTIEYCCTTAEKLVE-EQRKFDAVIASEVIEHVAD--PAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 207 ------~~~~v~~~~~d~~~l~~-~~~~fDlv~~~~~l~~~~~--~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
+-..|.|...|+.+.++ +.+.||+|+|.+++.|+.. ...+++.+++.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 12457899999877543 3578999999999999965 4679999999999999988764
No 168
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.98 E-value=7.6e-09 Score=97.83 Aligned_cols=131 Identities=18% Similarity=0.197 Sum_probs=94.3
Q ss_pred CeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc--cc--------------C
Q 019123 162 LNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV--EE--------------Q 225 (346)
Q Consensus 162 ~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~--------------~ 225 (346)
.+|||++||+|.+++.++....+|+|+|+++.+++.+++++..+++ .++.|+.+|+.+.. .. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGI-DNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 5799999999999999988777999999999999999999988877 58999999997642 10 1
Q ss_pred CceeEEEecchhcccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHH
Q 019123 226 RKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLI 305 (346)
Q Consensus 226 ~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (346)
..||+|++.-- + ..-.+.+++.+. +|++++++.. ++.. -..++..+
T Consensus 287 ~~~D~v~lDPP-R-~G~~~~~l~~l~---~~~~ivyvSC-~p~t----------------------------larDl~~L 332 (362)
T PRK05031 287 YNFSTIFVDPP-R-AGLDDETLKLVQ---AYERILYISC-NPET----------------------------LCENLETL 332 (362)
T ss_pred CCCCEEEECCC-C-CCCcHHHHHHHH---ccCCEEEEEe-CHHH----------------------------HHHHHHHH
Confidence 25899987421 1 011134444443 3677777664 2211 01345544
Q ss_pred HHHCCCcEEEEeccccCCCCCcee
Q 019123 306 LQRASIDVKEMAGFVYNPLTGRWS 329 (346)
Q Consensus 306 l~~aGF~~v~~~~~~~~~~~~~~~ 329 (346)
. + ||++.++..+.+.|.|.|..
T Consensus 333 ~-~-gY~l~~v~~~DmFPqT~HvE 354 (362)
T PRK05031 333 S-Q-THKVERFALFDQFPYTHHME 354 (362)
T ss_pred c-C-CcEEEEEEEcccCCCCCcEE
Confidence 4 3 99999999999999998843
No 169
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.95 E-value=4.7e-09 Score=91.06 Aligned_cols=104 Identities=21% Similarity=0.171 Sum_probs=86.6
Q ss_pred CCCCeEEEECCCCchhHHHHHHc---CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEE-cCccccc--ccCCceeEEE
Q 019123 159 FEGLNIVDVGCGGGILSEPLARM---GATVTGIDAVEKNIKIARLHADLDPETSTIEYCC-TTAEKLV--EEQRKFDAVI 232 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~-~d~~~l~--~~~~~fDlv~ 232 (346)
..+++|||||++.|..+.+|+.. ..+++.+|+++++.+.|++++...++..++..+. +|+.+.- ...++||+|+
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 47789999999999999999875 3489999999999999999999999988898888 5775432 2468999999
Q ss_pred ecchhcccCCHHHHHHHHHHhcccCceEEEEec
Q 019123 233 ASEVIEHVADPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 233 ~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
.-..= .+.+.++..+.+.|+|||++++...
T Consensus 138 IDadK---~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 138 IDADK---ADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred EeCCh---hhCHHHHHHHHHHhCCCcEEEEeec
Confidence 75321 2457899999999999999998643
No 170
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.90 E-value=5.6e-08 Score=91.59 Aligned_cols=130 Identities=17% Similarity=0.210 Sum_probs=92.7
Q ss_pred CeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccccc----------C------
Q 019123 162 LNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEE----------Q------ 225 (346)
Q Consensus 162 ~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~----------~------ 225 (346)
.+|||++||+|.+++.++....+|+|+|++++|++.+++++..+++ .++.|+.+|+.++... .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNI-DNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 4799999999999999988777999999999999999999988877 5799999999774321 1
Q ss_pred CceeEEEecchhcccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHH
Q 019123 226 RKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLI 305 (346)
Q Consensus 226 ~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (346)
..||+|++.-- + -.-...+++.+ ++|++++++.. ++... ..++..+
T Consensus 278 ~~~d~v~lDPP-R-~G~~~~~l~~l---~~~~~ivYvsC-~p~tl----------------------------aRDl~~L 323 (353)
T TIGR02143 278 YNCSTIFVDPP-R-AGLDPDTCKLV---QAYERILYISC-NPETL----------------------------KANLEQL 323 (353)
T ss_pred CCCCEEEECCC-C-CCCcHHHHHHH---HcCCcEEEEEc-CHHHH----------------------------HHHHHHH
Confidence 13798887321 1 00112344444 34778777764 22110 0244444
Q ss_pred HHHCCCcEEEEeccccCCCCCce
Q 019123 306 LQRASIDVKEMAGFVYNPLTGRW 328 (346)
Q Consensus 306 l~~aGF~~v~~~~~~~~~~~~~~ 328 (346)
. .||++..+..+.+.|.|.|.
T Consensus 324 ~--~~Y~l~~v~~~DmFP~T~Hv 344 (353)
T TIGR02143 324 S--ETHRVERFALFDQFPYTHHM 344 (353)
T ss_pred h--cCcEEEEEEEcccCCCCCcE
Confidence 3 35999999999999999874
No 171
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.90 E-value=2.7e-08 Score=88.57 Aligned_cols=164 Identities=19% Similarity=0.217 Sum_probs=100.3
Q ss_pred CCCCCCeEEEECCCCchhH-HHHHHcCCeEEEEcCChHHHHHHHHhhccCCC----------------C-----------
Q 019123 157 RPFEGLNIVDVGCGGGILS-EPLARMGATVTGIDAVEKNIKIARLHADLDPE----------------T----------- 208 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~-~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~----------------~----------- 208 (346)
....+.++||||||+-..- +.+++...+++..|..+..++..++.+...+. .
T Consensus 53 g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 3446779999999986442 22223344899999999998877776554311 0
Q ss_pred Cce-EEEEcCccccc-ccC-----CceeEEEecchhcccC-CH---HHHHHHHHHhcccCceEEEEecCcchHHHHHHHH
Q 019123 209 STI-EYCCTTAEKLV-EEQ-----RKFDAVIASEVIEHVA-DP---AEFCKSLSALTVSEGATVISTINRSMRAYATAII 277 (346)
Q Consensus 209 ~~v-~~~~~d~~~l~-~~~-----~~fDlv~~~~~l~~~~-~~---~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~ 277 (346)
..| .++.+|+.+.+ ... ..||+|++.++++... +. ..+++++.++|||||.|++...-...
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t-------- 204 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGST-------- 204 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-S--------
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCce--------
Confidence 012 46777876643 222 3599999999998764 44 46899999999999999998653211
Q ss_pred HHHHHhhhcCCCcccc-ccCCCHHHHHHHHHHCCCcEEEEeccccCCCCCceeeccCCceeEEEEeee
Q 019123 278 AAEHILHWLPKGTHQW-SSFLTPEELVLILQRASIDVKEMAGFVYNPLTGRWSLSDDISVNFIAFGTK 344 (346)
Q Consensus 278 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~rk 344 (346)
+...+...+ .-..+.+.+++.|+++||.++..+. . ....+..-.|++.+||
T Consensus 205 -------~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~~----~-----~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 205 -------YYMVGGHKFPCLPLNEEFVREALEEAGFDIEDLEK----Q-----SKVSDYEGMFFLVARK 256 (256)
T ss_dssp -------EEEETTEEEE---B-HHHHHHHHHHTTEEEEEEEG----------TTTB---EEEEEEEEE
T ss_pred -------eEEECCEecccccCCHHHHHHHHHHcCCEEEeccc----c-----cCcCCCCcEEEEEEeC
Confidence 111122211 2346889999999999999998772 1 1123445578888887
No 172
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.89 E-value=1.9e-08 Score=89.50 Aligned_cols=102 Identities=15% Similarity=0.143 Sum_probs=84.9
Q ss_pred CCCeEEEECCCCchhHHHHHHc---CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccc-cc--c----CCcee
Q 019123 160 EGLNIVDVGCGGGILSEPLARM---GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKL-VE--E----QRKFD 229 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l-~~--~----~~~fD 229 (346)
.+++|||||+++|..+..++.. +.+|+.+|++++..+.|++.+...++..+|+++.+++.+. +. . .++||
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 6779999999999999999864 4589999999999999999999999889999999998664 21 1 36899
Q ss_pred EEEecchhcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 230 AVIASEVIEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 230 lv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
+|++-.- -.....++..+.+.|+|||++++..
T Consensus 159 ~iFiDad---K~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 159 FIFVDAD---KDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred EEEecCC---HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 9998642 1235678888899999999988753
No 173
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.88 E-value=3.6e-09 Score=98.99 Aligned_cols=111 Identities=23% Similarity=0.228 Sum_probs=98.9
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHc-CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecc
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARM-GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASE 235 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~ 235 (346)
...++..++|+|||.|.....+... ++.++|+|.++..+..+........+..+..++.+|+.+.+++++.||.+.+..
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 4456678999999999999999887 469999999999998888877776666677788899999999999999999999
Q ss_pred hhcccCCHHHHHHHHHHhcccCceEEEEecCc
Q 019123 236 VIEHVADPAEFCKSLSALTVSEGATVISTINR 267 (346)
Q Consensus 236 ~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~ 267 (346)
+..|.++...++.+++|++||||.+++.++..
T Consensus 187 ~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~ 218 (364)
T KOG1269|consen 187 VVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIK 218 (364)
T ss_pred ecccCCcHHHHHHHHhcccCCCceEEeHHHHH
Confidence 99999999999999999999999999987754
No 174
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=3.8e-08 Score=94.42 Aligned_cols=157 Identities=20% Similarity=0.251 Sum_probs=114.1
Q ss_pred cccChhHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCc
Q 019123 131 HALNPTRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETST 210 (346)
Q Consensus 131 ~~~n~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~ 210 (346)
.+.|....+-+.....+.+ ...++.+|||+-||.|.+++.++....+|+|+|+++++++.|+++++.+++ .|
T Consensus 271 ~Q~N~~~~ekl~~~a~~~~-------~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i-~N 342 (432)
T COG2265 271 FQVNPAVAEKLYETALEWL-------ELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGI-DN 342 (432)
T ss_pred eecCHHHHHHHHHHHHHHH-------hhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCC-Cc
Confidence 3445554555555555543 345678999999999999999999889999999999999999999999998 56
Q ss_pred eEEEEcCccccccc---CCceeEEEecchhcccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcC
Q 019123 211 IEYCCTTAEKLVEE---QRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLP 287 (346)
Q Consensus 211 v~~~~~d~~~l~~~---~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (346)
+.|..++++++... ...+|+|++.--=.. -.+.+++.+.+ ++|-.+++++. |+
T Consensus 343 ~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G--~~~~~lk~l~~-~~p~~IvYVSC-NP-------------------- 398 (432)
T COG2265 343 VEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAG--ADREVLKQLAK-LKPKRIVYVSC-NP-------------------- 398 (432)
T ss_pred EEEEeCCHHHHhhhccccCCCCEEEECCCCCC--CCHHHHHHHHh-cCCCcEEEEeC-CH--------------------
Confidence 99999999987642 357899987310000 01245555554 57788888874 21
Q ss_pred CCccccccCCCHHHHHHHHHHCCCcEEEEeccccCCCCCce
Q 019123 288 KGTHQWSSFLTPEELVLILQRASIDVKEMAGFVYNPLTGRW 328 (346)
Q Consensus 288 ~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~ 328 (346)
.|...-...|...|+++.++..+.+.|.|.|.
T Consensus 399 ---------~TlaRDl~~L~~~gy~i~~v~~~DmFP~T~Hv 430 (432)
T COG2265 399 ---------ATLARDLAILASTGYEIERVQPFDMFPHTHHV 430 (432)
T ss_pred ---------HHHHHHHHHHHhCCeEEEEEEEeccCCCcccc
Confidence 11223334677899999999999999999874
No 175
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.88 E-value=1.5e-08 Score=92.50 Aligned_cols=148 Identities=15% Similarity=0.058 Sum_probs=104.9
Q ss_pred CCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhccc
Q 019123 161 GLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEHV 240 (346)
Q Consensus 161 ~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~~ 240 (346)
-...+|+|+|.|.++..++.+...|-++++....+..+...+. .+ |..+.+|+.+- .|. -|+|++-++|+|+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~P~--~daI~mkWiLhdw 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-TPK--GDAIWMKWILHDW 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-CC----cceeccccccc-CCC--cCeEEEEeecccC
Confidence 4689999999999999999876689999999888777766654 22 77888887555 343 4799999999999
Q ss_pred CCHH--HHHHHHHHhcccCceEEEEecCcch-HHH----HHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcE
Q 019123 241 ADPA--EFCKSLSALTVSEGATVISTINRSM-RAY----ATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDV 313 (346)
Q Consensus 241 ~~~~--~~l~~~~r~LkpgG~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~ 313 (346)
+|.+ ++|++++..|+|||.+++.+..-.. ... ................+. .-.+.++++.++.++||.+
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~G----kert~~e~q~l~~~~gF~~ 325 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGG----KERTLKEFQALLPEEGFPV 325 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccc----eeccHHHHHhcchhhcCce
Confidence 9854 8999999999999999998872211 000 000011111111111111 2357899999999999999
Q ss_pred EEEeccc
Q 019123 314 KEMAGFV 320 (346)
Q Consensus 314 v~~~~~~ 320 (346)
..+.-..
T Consensus 326 ~~~~~~~ 332 (342)
T KOG3178|consen 326 CMVALTA 332 (342)
T ss_pred eEEEecc
Confidence 8765433
No 176
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.85 E-value=2.6e-08 Score=91.28 Aligned_cols=109 Identities=22% Similarity=0.194 Sum_probs=89.1
Q ss_pred CCCCCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEc-CcccccccCCceeEEEec
Q 019123 156 ARPFEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCT-TAEKLVEEQRKFDAVIAS 234 (346)
Q Consensus 156 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~-d~~~l~~~~~~fDlv~~~ 234 (346)
+...++..|||--||||.+++...-.|+.++|+|++..|+.-++.++...++ ....++.. |+..+|++++++|.|++-
T Consensus 193 a~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i-~~~~~~~~~Da~~lpl~~~~vdaIatD 271 (347)
T COG1041 193 ARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGI-EDYPVLKVLDATNLPLRDNSVDAIATD 271 (347)
T ss_pred hccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCc-CceeEEEecccccCCCCCCccceEEec
Confidence 4567889999999999999999988899999999999999999999988765 34444544 999999988899999984
Q ss_pred chhccc-----CC----HHHHHHHHHHhcccCceEEEEec
Q 019123 235 EVIEHV-----AD----PAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 235 ~~l~~~-----~~----~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
--..-- .. ..++|+.+.++||+||++++..+
T Consensus 272 PPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 272 PPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 321111 11 35789999999999999998865
No 177
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.85 E-value=2e-08 Score=94.65 Aligned_cols=107 Identities=21% Similarity=0.228 Sum_probs=88.9
Q ss_pred CCCeEEEECCCCchhHHHHHHcCC-eEEEEcCChHHHHHHHHhhccCCCC-CceEEEEcCccccc----ccCCceeEEEe
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIKIARLHADLDPET-STIEYCCTTAEKLV----EEQRKFDAVIA 233 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~-~~v~~~~~d~~~l~----~~~~~fDlv~~ 233 (346)
.+++|||+-|=||.++...+..|+ +|+++|+|...++.|++++.-+++. .++.|+++|+.++- ....+||+|++
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 488999999999999999999999 9999999999999999999999874 56899999997653 23558999998
Q ss_pred cc---------hhcccCCHHHHHHHHHHhcccCceEEEEecC
Q 019123 234 SE---------VIEHVADPAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 234 ~~---------~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
-- ...-..+...++..+.++|+|||++++....
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 32 1112234557889999999999999998754
No 178
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.83 E-value=2.3e-08 Score=86.16 Aligned_cols=98 Identities=22% Similarity=0.268 Sum_probs=75.4
Q ss_pred CCCCeEEEECCCCchhHHHHHH--cCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecch
Q 019123 159 FEGLNIVDVGCGGGILSEPLAR--MGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEV 236 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~ 236 (346)
.++..|||+.||.|.+++.++. .+..|+++|++|.+++.+++++..+.+..++..+++|+.++.. .+.||.|++..-
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp 178 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP 178 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--T
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh
Confidence 4788999999999999999998 5678999999999999999999999998889999999988865 778999988532
Q ss_pred hcccCCHHHHHHHHHHhcccCceEE
Q 019123 237 IEHVADPAEFCKSLSALTVSEGATV 261 (346)
Q Consensus 237 l~~~~~~~~~l~~~~r~LkpgG~~~ 261 (346)
.....+|..+.+++|+||++.
T Consensus 179 ----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 ----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ----SSGGGGHHHHHHHEEEEEEEE
T ss_pred ----HHHHHHHHHHHHHhcCCcEEE
Confidence 233468888999999999874
No 179
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.83 E-value=3.7e-08 Score=84.58 Aligned_cols=105 Identities=13% Similarity=0.053 Sum_probs=78.9
Q ss_pred CCCeEEEECCCCchhHHHHHHcCC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccc-c-c-cCC-ceeEEEec
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKL-V-E-EQR-KFDAVIAS 234 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l-~-~-~~~-~fDlv~~~ 234 (346)
.+.+|||++||+|.+++.++.+|+ .|+++|.++.+++.+++++...++..+++++.+|+... . . ... .||+|+..
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 567999999999999999999987 89999999999999999998887766799999999553 2 1 122 47887774
Q ss_pred chhcccCCHHHHHHHHH--HhcccCceEEEEec
Q 019123 235 EVIEHVADPAEFCKSLS--ALTVSEGATVISTI 265 (346)
Q Consensus 235 ~~l~~~~~~~~~l~~~~--r~LkpgG~~~~~~~ 265 (346)
--... .....++..+. .+|+++|++++...
T Consensus 129 PPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 129 PPFFN-GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred cCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 33321 22345555443 46888888777654
No 180
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.83 E-value=3.5e-08 Score=86.81 Aligned_cols=141 Identities=14% Similarity=0.141 Sum_probs=82.8
Q ss_pred CCCCeEEEECCCCchhHHHHHHcCC-eEEEEcCChHHHHH-HHHhhccCCCCCce-EEEEcCccc-----ccccCCceeE
Q 019123 159 FEGLNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIKI-ARLHADLDPETSTI-EYCCTTAEK-----LVEEQRKFDA 230 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~l~~-a~~~~~~~~~~~~v-~~~~~d~~~-----l~~~~~~fDl 230 (346)
.++..|||+|||+|.++..+++.|+ .|+++|+++.|+.. .++.. ++ .+...|+.. ++..-..+|+
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~-------~v~~~~~~ni~~~~~~~~~~d~~~~Dv 146 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDE-------RVKVLERTNIRYVTPADIFPDFATFDV 146 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCC-------CeeEeecCCcccCCHhHcCCCceeeeE
Confidence 4678999999999999999999976 89999999988875 33321 22 123334432 2212235776
Q ss_pred EEecchhcccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCC
Q 019123 231 VIASEVIEHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRAS 310 (346)
Q Consensus 231 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 310 (346)
++++.. ..+..+.+.|+| |.++++. -+. +..-....-....+. ... .+..-.+++...+.+.|
T Consensus 147 sfiS~~--------~~l~~i~~~l~~-~~~~~L~-KPq----FE~~~~~~~~~giv~-~~~--~~~~~~~~~~~~~~~~~ 209 (228)
T TIGR00478 147 SFISLI--------SILPELDLLLNP-NDLTLLF-KPQ----FEAGREKKNKKGVVR-DKE--AIALALHKVIDKGESPD 209 (228)
T ss_pred EEeehH--------hHHHHHHHHhCc-CeEEEEc-ChH----hhhcHhhcCcCCeec-CHH--HHHHHHHHHHHHHHcCC
Confidence 666543 357889999999 7766654 211 110000000000010 000 11233467778888999
Q ss_pred CcEEEEeccccCCCCC
Q 019123 311 IDVKEMAGFVYNPLTG 326 (346)
Q Consensus 311 F~~v~~~~~~~~~~~~ 326 (346)
|++..+ ...|..|
T Consensus 210 ~~~~~~---~~s~i~G 222 (228)
T TIGR00478 210 FQEKKI---IFSLTKG 222 (228)
T ss_pred CeEeeE---EECCCCC
Confidence 998654 4455554
No 181
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.82 E-value=3.5e-08 Score=89.05 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=64.8
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecch
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEV 236 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~ 236 (346)
...++.+|||||||+|.++..+++.+.+|+++|+++.|++.+++++.. ..++.++++|+.+++++ .||.|+++.-
T Consensus 26 ~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~~~~--~~d~Vv~NlP 100 (258)
T PRK14896 26 EDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKVDLP--EFNKVVSNLP 100 (258)
T ss_pred CCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccCCch--hceEEEEcCC
Confidence 345678999999999999999999988999999999999999988754 25799999999887754 4899988655
Q ss_pred h
Q 019123 237 I 237 (346)
Q Consensus 237 l 237 (346)
.
T Consensus 101 y 101 (258)
T PRK14896 101 Y 101 (258)
T ss_pred c
Confidence 4
No 182
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.81 E-value=3.8e-08 Score=86.46 Aligned_cols=107 Identities=21% Similarity=0.240 Sum_probs=81.0
Q ss_pred CCCeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-----ccCCceeEEE
Q 019123 160 EGLNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-----EEQRKFDAVI 232 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~~~~~fDlv~ 232 (346)
.+..|||+|||+|.++..++.. .+.|+++|.|+.++..|.++++...+.+.+.++..+++... ...+.+|+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 4458999999999999999875 45899999999999999999999888888888866654432 3468899999
Q ss_pred ecchh-cc-------------------------cCCHHHHHHHHHHhcccCceEEEEecC
Q 019123 233 ASEVI-EH-------------------------VADPAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 233 ~~~~l-~~-------------------------~~~~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
++--. .+ ....-.++.-+.|.|+|||.+.+....
T Consensus 228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~ 287 (328)
T KOG2904|consen 228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE 287 (328)
T ss_pred cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecc
Confidence 85311 00 001123556677999999998887653
No 183
>PRK00536 speE spermidine synthase; Provisional
Probab=98.80 E-value=6.1e-08 Score=86.79 Aligned_cols=101 Identities=13% Similarity=0.010 Sum_probs=78.6
Q ss_pred CCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCC--C-CCceEEEEcCcccccccCCceeEEEecc
Q 019123 159 FEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDP--E-TSTIEYCCTTAEKLVEEQRKFDAVIASE 235 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~--~-~~~v~~~~~d~~~l~~~~~~fDlv~~~~ 235 (346)
..+++||=||+|.|..++.++++..+|+.+||++++++.+++.+.... + +++++++.. +.+ ...++||+|++-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEcC
Confidence 356899999999999999999997799999999999999999654321 1 467777752 111 1246899999863
Q ss_pred hhcccCCHHHHHHHHHHhcccCceEEEEecCc
Q 019123 236 VIEHVADPAEFCKSLSALTVSEGATVISTINR 267 (346)
Q Consensus 236 ~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~ 267 (346)
. ..+.+++.++++|+|||++++..-++
T Consensus 148 ~-----~~~~fy~~~~~~L~~~Gi~v~Qs~sp 174 (262)
T PRK00536 148 E-----PDIHKIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_pred C-----CChHHHHHHHHhcCCCcEEEECCCCc
Confidence 2 34688899999999999999875443
No 184
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.80 E-value=4e-08 Score=89.96 Aligned_cols=77 Identities=21% Similarity=0.205 Sum_probs=65.5
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecc
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASE 235 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~ 235 (346)
...++.+|||||||+|.++..+++.+.+|+++|+++.|++.+++++...+...+++++.+|+.+.+. ..||+|+++.
T Consensus 33 ~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~~d~VvaNl 109 (294)
T PTZ00338 33 AIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PYFDVCVANV 109 (294)
T ss_pred CCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cccCEEEecC
Confidence 4457789999999999999999998889999999999999999988765544789999999987664 3689888653
No 185
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.80 E-value=3.5e-08 Score=89.80 Aligned_cols=75 Identities=24% Similarity=0.218 Sum_probs=62.0
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecc
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASE 235 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~ 235 (346)
...++.+|||||||+|.++..+++++.+|+|+|+++.|++.+++++.. .+++++++|+.++++++-.+|.|+++-
T Consensus 39 ~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~~~~~vv~Nl 113 (272)
T PRK00274 39 GPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSELQPLKVVANL 113 (272)
T ss_pred CCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHHcCcceEEEeC
Confidence 345678999999999999999999988999999999999999887643 579999999998876432247777653
No 186
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.78 E-value=3e-08 Score=89.90 Aligned_cols=108 Identities=17% Similarity=0.223 Sum_probs=81.0
Q ss_pred CCCeEEEECCCCchhHHHHHHcCC-eEEEEcCChHHHHHHHHhhccCCCC-CceEEEEcCccccc---ccCCceeEEEec
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIKIARLHADLDPET-STIEYCCTTAEKLV---EEQRKFDAVIAS 234 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~-~~v~~~~~d~~~l~---~~~~~fDlv~~~ 234 (346)
.+++|||+-|=||.++...+..|+ +|+.+|.|..+++.+++++.-++++ .+++|++.|+.+.. ...++||+|++-
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 578999999999999999988887 7999999999999999999988875 68999999987642 135689999983
Q ss_pred c---h---hcccCCHHHHHHHHHHhcccCceEEEEecCc
Q 019123 235 E---V---IEHVADPAEFCKSLSALTVSEGATVISTINR 267 (346)
Q Consensus 235 ~---~---l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~ 267 (346)
- . ..-..+...++..+.++|+|||.+++...+.
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 1 1 0011245578899999999999988776543
No 187
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.78 E-value=9.9e-08 Score=85.95 Aligned_cols=105 Identities=22% Similarity=0.224 Sum_probs=83.3
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHcCC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecc
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASE 235 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~ 235 (346)
....++.|||||||+|.+++..+..|+ +|++++-| +|.+.|++.+..+.+..+|.++.+.++++..| ++.|+|++--
T Consensus 174 sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEP 251 (517)
T KOG1500|consen 174 SDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEP 251 (517)
T ss_pred cccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEecc
Confidence 345778999999999999999999988 89999975 79999999999998889999999999998774 5799998732
Q ss_pred ---hhcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 236 ---VIEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 236 ---~l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
.|.+- ...+-.-.+++.|||.|.++-..
T Consensus 252 MG~mL~NE-RMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 252 MGYMLVNE-RMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred chhhhhhH-HHHHHHHHHHhhcCCCCcccCcc
Confidence 22221 12233345679999999877543
No 188
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.76 E-value=8e-08 Score=86.23 Aligned_cols=106 Identities=12% Similarity=0.091 Sum_probs=82.0
Q ss_pred CCCeEEEECCCCc----hhHHHHHHcC-------CeEEEEcCChHHHHHHHHhhcc-----CC-----------------
Q 019123 160 EGLNIVDVGCGGG----ILSEPLARMG-------ATVTGIDAVEKNIKIARLHADL-----DP----------------- 206 (346)
Q Consensus 160 ~~~~vLDiG~G~G----~~~~~l~~~~-------~~v~giD~s~~~l~~a~~~~~~-----~~----------------- 206 (346)
...+|+-+||+|| .+++.+.+.+ .+|+++||+..+|+.|+.-.-. .+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4679999999999 4666666552 4899999999999998764322 10
Q ss_pred ------CCCceEEEEcCcccccccCCceeEEEecchhcccCCH--HHHHHHHHHhcccCceEEEEec
Q 019123 207 ------ETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEHVADP--AEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 207 ------~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~~~~~--~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
+-..|.|...|+...+...+.||+|+|.+|+-++..+ ..+++.++..|+|||+|++..-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 0234677777776655345679999999999999764 4799999999999999999743
No 189
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.75 E-value=5.1e-08 Score=82.97 Aligned_cols=96 Identities=25% Similarity=0.279 Sum_probs=79.4
Q ss_pred eEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhccc
Q 019123 163 NIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEHV 240 (346)
Q Consensus 163 ~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~~ 240 (346)
+++|||+|.|.-++.++=. ..+++.+|.+..-+...+......++ .|+++++..+++ .....+||+|++.. +
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~-~~~~~~fd~v~aRA----v 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL-SNVEVINGRAEE-PEYRESFDVVTARA----V 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT--SSEEEEES-HHH-TTTTT-EEEEEEES----S
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC-CCEEEEEeeecc-cccCCCccEEEeeh----h
Confidence 7999999999888777654 55899999999999888888888787 689999999998 44577899999974 4
Q ss_pred CCHHHHHHHHHHhcccCceEEEEe
Q 019123 241 ADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 241 ~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
.....++.-+...|++||.+++.-
T Consensus 125 ~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 478899999999999999988874
No 190
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.74 E-value=1.5e-07 Score=88.74 Aligned_cols=146 Identities=24% Similarity=0.363 Sum_probs=91.0
Q ss_pred ccChhHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCce
Q 019123 132 ALNPTRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTI 211 (346)
Q Consensus 132 ~~n~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v 211 (346)
+.|......+...+.+.+ ...++ .|||+-||.|.++..++....+|+|+|+++.+++.|++++..+++ .|+
T Consensus 176 QvN~~~~~~l~~~~~~~l-------~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i-~n~ 246 (352)
T PF05958_consen 176 QVNPEQNEKLYEQALEWL-------DLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGI-DNV 246 (352)
T ss_dssp -SBHHHHHHHHHHHHHHC-------TT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT---SE
T ss_pred cCcHHHHHHHHHHHHHHh-------hcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCC-Ccc
Confidence 334444444444444443 33334 899999999999999999999999999999999999999999988 789
Q ss_pred EEEEcCccccc----------------ccCCceeEEEecchhcccCCHH------HHHHHHHHhcccCceEEEEecCcch
Q 019123 212 EYCCTTAEKLV----------------EEQRKFDAVIASEVIEHVADPA------EFCKSLSALTVSEGATVISTINRSM 269 (346)
Q Consensus 212 ~~~~~d~~~l~----------------~~~~~fDlv~~~~~l~~~~~~~------~~l~~~~r~LkpgG~~~~~~~~~~~ 269 (346)
+|+.++++++. .....+|+|+. ||+ .++..+. ++.-+++++. ++..
T Consensus 247 ~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vil--------DPPR~G~~~~~~~~~~---~~~~ivYvSC-nP~t 314 (352)
T PF05958_consen 247 EFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVIL--------DPPRAGLDEKVIELIK---KLKRIVYVSC-NPAT 314 (352)
T ss_dssp EEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE-----------TT-SCHHHHHHHH---HSSEEEEEES--HHH
T ss_pred eEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEE--------cCCCCCchHHHHHHHh---cCCeEEEEEC-CHHH
Confidence 99998876542 11235788876 443 3444443 3344555543 3211
Q ss_pred HHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEEeccccCCCCCce
Q 019123 270 RAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMAGFVYNPLTGRW 328 (346)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~ 328 (346)
. ..++..+ . .||++..+..+.+.|.|.|.
T Consensus 315 l----------------------------aRDl~~L-~-~~y~~~~v~~~DmFP~T~Hv 343 (352)
T PF05958_consen 315 L----------------------------ARDLKIL-K-EGYKLEKVQPVDMFPQTHHV 343 (352)
T ss_dssp H----------------------------HHHHHHH-H-CCEEEEEEEEE-SSTTSS--
T ss_pred H----------------------------HHHHHHH-h-hcCEEEEEEEeecCCCCCcE
Confidence 0 0244443 3 39999999999999999874
No 191
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.74 E-value=4.4e-09 Score=100.02 Aligned_cols=98 Identities=18% Similarity=0.167 Sum_probs=70.8
Q ss_pred CeEEEECCCCchhHHHHHHcCCeEEEE---cCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhc
Q 019123 162 LNIVDVGCGGGILSEPLARMGATVTGI---DAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIE 238 (346)
Q Consensus 162 ~~vLDiG~G~G~~~~~l~~~~~~v~gi---D~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~ 238 (346)
..+||||||+|.++.+|++++..+..+ |..+..++.|.++- +.. -+-..--..||+++++||+|+|+.++.
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRG----vpa--~~~~~~s~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERG----VPA--MIGVLGSQRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcC----cch--hhhhhccccccCCccchhhhhcccccc
Confidence 478999999999999999997654443 33344555555442 111 111222367899999999999998886
Q ss_pred ccCCH-HHHHHHHHHhcccCceEEEEec
Q 019123 239 HVADP-AEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 239 ~~~~~-~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
..... .-+|-++.|+|+|||+|+.+.+
T Consensus 193 ~W~~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 193 PWHPNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred cchhcccceeehhhhhhccCceEEecCC
Confidence 55433 4578999999999999999866
No 192
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.73 E-value=8.9e-08 Score=94.34 Aligned_cols=107 Identities=13% Similarity=0.075 Sum_probs=85.1
Q ss_pred CCCeEEEECCCCchhHHHHHHcC--CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc--ccCCceeEEEecc
Q 019123 160 EGLNIVDVGCGGGILSEPLARMG--ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV--EEQRKFDAVIASE 235 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~--~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~fDlv~~~~ 235 (346)
....+||||||.|.++..++... ..++|+|+....+..+.+++...++ .|+.+++.|+..+. ++++++|.|++.|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 45789999999999999999874 4799999999988888887777666 78999988876543 5788999999865
Q ss_pred hhcccCC--------HHHHHHHHHHhcccCceEEEEecCc
Q 019123 236 VIEHVAD--------PAEFCKSLSALTVSEGATVISTINR 267 (346)
Q Consensus 236 ~l~~~~~--------~~~~l~~~~r~LkpgG~~~~~~~~~ 267 (346)
--=|... -+.+++.++++|||||.+.+.+-+.
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~ 465 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIE 465 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCH
Confidence 3322211 1379999999999999999987543
No 193
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.72 E-value=2.1e-07 Score=75.92 Aligned_cols=105 Identities=19% Similarity=0.215 Sum_probs=89.8
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHcCC---eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-----ccCCce
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARMGA---TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-----EEQRKF 228 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~~~---~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~~~~~f 228 (346)
.+..+.-|||+|.|||.++..++.+|. .++.+|.|++......++. +.++++.+|+.++. ..+..|
T Consensus 45 ~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda~~l~~~l~e~~gq~~ 118 (194)
T COG3963 45 DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDAFDLRTTLGEHKGQFF 118 (194)
T ss_pred CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccchhhHHHHHhhcCCCee
Confidence 556788999999999999999999976 7999999999999998887 34668999998775 357789
Q ss_pred eEEEecchhcccCCH--HHHHHHHHHhcccCceEEEEecCc
Q 019123 229 DAVIASEVIEHVADP--AEFCKSLSALTVSEGATVISTINR 267 (346)
Q Consensus 229 Dlv~~~~~l~~~~~~--~~~l~~~~r~LkpgG~~~~~~~~~ 267 (346)
|.|+|..-+.+++-- .++|+.+...|.+||.++.....+
T Consensus 119 D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 119 DSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred eeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 999999888888753 478999999999999999887664
No 194
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.71 E-value=9.2e-10 Score=92.48 Aligned_cols=150 Identities=13% Similarity=0.215 Sum_probs=96.1
Q ss_pred CCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhc
Q 019123 159 FEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIE 238 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~ 238 (346)
..+.++||+|.|.|.++..++....+|++.++|..|....+++- ..++ ..-+....+-+||+|.|...+.
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~--------ynVl--~~~ew~~t~~k~dli~clNlLD 180 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKN--------YNVL--TEIEWLQTDVKLDLILCLNLLD 180 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcC--------Ccee--eehhhhhcCceeehHHHHHHHH
Confidence 34579999999999999999988778999999999999887642 1111 1112222345799999999999
Q ss_pred ccCCHHHHHHHHHHhccc-CceEEEEecCcchHHHHHHHHHHHHH--hhhcCCCccccccCCCHHHHHHHHHHCCCcEEE
Q 019123 239 HVADPAEFCKSLSALTVS-EGATVISTINRSMRAYATAIIAAEHI--LHWLPKGTHQWSSFLTPEELVLILQRASIDVKE 315 (346)
Q Consensus 239 ~~~~~~~~l~~~~r~Lkp-gG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~ 315 (346)
...++-.+|+.++.+|.| .|.+++.-.-+.. ++........+. ...+......+. -....+-++++++||++..
T Consensus 181 Rc~~p~kLL~Di~~vl~psngrvivaLVLP~~-hYVE~N~~g~~~rPdn~Le~~Gr~~e--e~v~~~~e~lr~~g~~vea 257 (288)
T KOG3987|consen 181 RCFDPFKLLEDIHLVLAPSNGRVIVALVLPYM-HYVETNTSGLPLRPDNLLENNGRSFE--EEVARFMELLRNCGYRVEA 257 (288)
T ss_pred hhcChHHHHHHHHHHhccCCCcEEEEEEeccc-ceeecCCCCCcCCchHHHHhcCccHH--HHHHHHHHHHHhcCchhhh
Confidence 888999999999999999 7877775322111 010000000000 000111111111 0123567889999999876
Q ss_pred Eecccc
Q 019123 316 MAGFVY 321 (346)
Q Consensus 316 ~~~~~~ 321 (346)
+..++|
T Consensus 258 wTrlPY 263 (288)
T KOG3987|consen 258 WTRLPY 263 (288)
T ss_pred hhcCCe
Confidence 655554
No 195
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.71 E-value=1.4e-07 Score=87.13 Aligned_cols=128 Identities=18% Similarity=0.172 Sum_probs=105.1
Q ss_pred CCCeEEEECCCCchhHHHHHHcCCe-EEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhc
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGAT-VTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIE 238 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~~-v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~ 238 (346)
++..|||+-+|.|.+++.++.+|.. |+++|+||.+++.+++++..+++...+..+++|+......-+.+|-|++..
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~--- 264 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL--- 264 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC---
Confidence 5899999999999999999999885 999999999999999999999987779999999999876557899999873
Q ss_pred ccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEE
Q 019123 239 HVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVK 314 (346)
Q Consensus 239 ~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v 314 (346)
..+-..++..+.+.|++||++.+-++.+.... .......+.......|+++.
T Consensus 265 -p~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~-----------------------~~~~~~~i~~~~~~~~~~~~ 316 (341)
T COG2520 265 -PKSAHEFLPLALELLKDGGIIHYYEFVPEDDI-----------------------EERPEKRIKSAARKGGYKVE 316 (341)
T ss_pred -CCcchhhHHHHHHHhhcCcEEEEEeccchhhc-----------------------ccchHHHHHHHHhhccCcce
Confidence 34557788999999999999999887654321 01134677778888886443
No 196
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.70 E-value=1.6e-07 Score=89.10 Aligned_cols=98 Identities=22% Similarity=0.249 Sum_probs=80.6
Q ss_pred CCeEEEECCCCchhHHHHHHc-CC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhc
Q 019123 161 GLNIVDVGCGGGILSEPLARM-GA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIE 238 (346)
Q Consensus 161 ~~~vLDiG~G~G~~~~~l~~~-~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~ 238 (346)
+.+|||++||+|.+++.++.. +. +|+++|+++.+++.+++++..+++ .++.+++.|+..+....+.||+|++.-
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~-~~~~v~~~Da~~~l~~~~~fD~V~lDP--- 133 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL-ENEKVFNKDANALLHEERKFDVVDIDP--- 133 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CceEEEhhhHHHHHhhcCCCCEEEECC---
Confidence 468999999999999999875 32 899999999999999999988776 467799999876532145799999853
Q ss_pred ccCCHHHHHHHHHHhcccCceEEEE
Q 019123 239 HVADPAEFCKSLSALTVSEGATVIS 263 (346)
Q Consensus 239 ~~~~~~~~l~~~~r~LkpgG~~~~~ 263 (346)
+..+..++..+.+.+++||++++.
T Consensus 134 -~Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 134 -FGSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -CCCcHHHHHHHHHHhcCCCEEEEE
Confidence 144567888888889999999997
No 197
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.70 E-value=2.2e-07 Score=79.03 Aligned_cols=107 Identities=22% Similarity=0.244 Sum_probs=77.0
Q ss_pred CCCCCCCeEEEECCCCchhHHHHHHcCC--e---------EEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccccc
Q 019123 156 ARPFEGLNIVDVGCGGGILSEPLARMGA--T---------VTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEE 224 (346)
Q Consensus 156 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~---------v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 224 (346)
+...++..|||--||+|.+.+..+..+. . ++|+|+++.++..+++++...++...+.+.+.|+..++..
T Consensus 24 a~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~ 103 (179)
T PF01170_consen 24 AGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLP 103 (179)
T ss_dssp TT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGT
T ss_pred hCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccc
Confidence 3456778999999999999987765532 3 7899999999999999999888877899999999999977
Q ss_pred CCceeEEEecchhccc-C---C----HHHHHHHHHHhcccCceEEEE
Q 019123 225 QRKFDAVIASEVIEHV-A---D----PAEFCKSLSALTVSEGATVIS 263 (346)
Q Consensus 225 ~~~fDlv~~~~~l~~~-~---~----~~~~l~~~~r~LkpgG~~~~~ 263 (346)
++++|+|++.--...- . + ...+++++.++|++ ..+++.
T Consensus 104 ~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~ 149 (179)
T PF01170_consen 104 DGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLT 149 (179)
T ss_dssp TSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEE
T ss_pred cCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEE
Confidence 8899999996422211 1 1 23578889999998 433333
No 198
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.68 E-value=2.5e-07 Score=83.82 Aligned_cols=105 Identities=15% Similarity=0.143 Sum_probs=83.7
Q ss_pred CeEEEECCCCchhHHHHHHcC--CeEEEEcCChHHHHHHHHhhccCC--C-CCceEEEEcCcccccc-cCCceeEEEecc
Q 019123 162 LNIVDVGCGGGILSEPLARMG--ATVTGIDAVEKNIKIARLHADLDP--E-TSTIEYCCTTAEKLVE-EQRKFDAVIASE 235 (346)
Q Consensus 162 ~~vLDiG~G~G~~~~~l~~~~--~~v~giD~s~~~l~~a~~~~~~~~--~-~~~v~~~~~d~~~l~~-~~~~fDlv~~~~ 235 (346)
++||-||.|.|..+..++++. .+++.+||++..++.+++.+.... . +++++++..|..++-. ...+||+|++..
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 699999999999999999996 489999999999999999876643 2 4889999999877643 234799999853
Q ss_pred hhcccC----CHHHHHHHHHHhcccCceEEEEecC
Q 019123 236 VIEHVA----DPAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 236 ~l~~~~----~~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
.=.--+ --..+++.+++.|+++|+++...-+
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 221000 0168999999999999999998433
No 199
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.68 E-value=4.5e-07 Score=81.64 Aligned_cols=74 Identities=27% Similarity=0.325 Sum_probs=61.3
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCcee---EEEe
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFD---AVIA 233 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD---lv~~ 233 (346)
...++.+|||||||+|.++..+++.+..|+++|+++.+++.++.++.. ..++.++.+|+..++++ .+| +|++
T Consensus 26 ~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~--~~d~~~~vvs 100 (253)
T TIGR00755 26 NVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP--DFPKQLKVVS 100 (253)
T ss_pred CCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh--HcCCcceEEE
Confidence 445678999999999999999999988999999999999999887643 26799999999888754 456 5555
Q ss_pred cc
Q 019123 234 SE 235 (346)
Q Consensus 234 ~~ 235 (346)
+.
T Consensus 101 Nl 102 (253)
T TIGR00755 101 NL 102 (253)
T ss_pred cC
Confidence 43
No 200
>PLN02823 spermine synthase
Probab=98.67 E-value=2e-07 Score=86.78 Aligned_cols=104 Identities=17% Similarity=0.237 Sum_probs=80.3
Q ss_pred CCCeEEEECCCCchhHHHHHHcC--CeEEEEcCChHHHHHHHHhhccCC---CCCceEEEEcCccccc-ccCCceeEEEe
Q 019123 160 EGLNIVDVGCGGGILSEPLARMG--ATVTGIDAVEKNIKIARLHADLDP---ETSTIEYCCTTAEKLV-EEQRKFDAVIA 233 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~--~~v~giD~s~~~l~~a~~~~~~~~---~~~~v~~~~~d~~~l~-~~~~~fDlv~~ 233 (346)
.+.+||.||+|.|..+..++.+. .+|+.+|+++++++.+++.+.... .+++++++.+|+...- ...++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 45799999999999999988863 489999999999999999875432 1478999999987753 34568999998
Q ss_pred cchhcccC-C------HHHHHH-HHHHhcccCceEEEEe
Q 019123 234 SEVIEHVA-D------PAEFCK-SLSALTVSEGATVIST 264 (346)
Q Consensus 234 ~~~l~~~~-~------~~~~l~-~~~r~LkpgG~~~~~~ 264 (346)
-.. .... . -.++++ .+.+.|+|||++++..
T Consensus 183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 631 1110 0 236777 8999999999988764
No 201
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.66 E-value=1.8e-07 Score=82.24 Aligned_cols=77 Identities=17% Similarity=0.199 Sum_probs=70.2
Q ss_pred CCCCCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEec
Q 019123 156 ARPFEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIAS 234 (346)
Q Consensus 156 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~ 234 (346)
+...++..|||||.|||.++..|++.|.+|+++++++.|+....++.+..+.+...+++++|+...+.| .||+++++
T Consensus 54 a~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsN 130 (315)
T KOG0820|consen 54 ADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDGCVSN 130 (315)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--ccceeecc
Confidence 577889999999999999999999999999999999999999999999988888999999999877643 68999883
No 202
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.64 E-value=8.2e-08 Score=81.87 Aligned_cols=107 Identities=22% Similarity=0.262 Sum_probs=79.7
Q ss_pred CCCeEEEECCCCchhHHHHHHcCC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc----ccCCceeEEEec
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV----EEQRKFDAVIAS 234 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~----~~~~~fDlv~~~ 234 (346)
++.+|||+-||+|.+++..+.+|+ +|+.+|.++..+...++++...+...++.++..|+...- .....||+|++.
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence 688999999999999999999997 899999999999999999988877667999999965432 246789999985
Q ss_pred chhcccCC-HHHHHHHHH--HhcccCceEEEEecCc
Q 019123 235 EVIEHVAD-PAEFCKSLS--ALTVSEGATVISTINR 267 (346)
Q Consensus 235 ~~l~~~~~-~~~~l~~~~--r~LkpgG~~~~~~~~~ 267 (346)
--... .. ...++..+. ..|+++|++++.....
T Consensus 122 PPY~~-~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 122 PPYAK-GLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp -STTS-CHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CCccc-chHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 32221 12 366777776 7899999998887543
No 203
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=2.2e-07 Score=78.72 Aligned_cols=102 Identities=25% Similarity=0.347 Sum_probs=82.2
Q ss_pred CCCCCeEEEECCCCchhHHHHHHc----CCeEEEEcCChHHHHHHHHhhccCC--------C-CCceEEEEcCccccccc
Q 019123 158 PFEGLNIVDVGCGGGILSEPLARM----GATVTGIDAVEKNIKIARLHADLDP--------E-TSTIEYCCTTAEKLVEE 224 (346)
Q Consensus 158 ~~~~~~vLDiG~G~G~~~~~l~~~----~~~v~giD~s~~~l~~a~~~~~~~~--------~-~~~v~~~~~d~~~l~~~ 224 (346)
+.++.+.||+|+|+|.++-.++.. |..++|||.-++.++.+++++.+.- + .+++.++.+|......+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 358899999999999998888754 4456999999999999998876543 1 35788999999988878
Q ss_pred CCceeEEEecchhcccCCHHHHHHHHHHhcccCceEEEEec
Q 019123 225 QRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 225 ~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
...||.|+|... ..+..+++...|+|||.+++-..
T Consensus 160 ~a~YDaIhvGAa------a~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 160 QAPYDAIHVGAA------ASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred cCCcceEEEccC------ccccHHHHHHhhccCCeEEEeec
Confidence 889999999843 34566777888999999988643
No 204
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.58 E-value=6.7e-07 Score=80.00 Aligned_cols=107 Identities=15% Similarity=0.191 Sum_probs=80.9
Q ss_pred CCCeEEEECCCCchhHHHHHHcC--CeEEEEcCChHHHHHHHHhhccCC---CCCceEEEEcCcccccc-cCC-ceeEEE
Q 019123 160 EGLNIVDVGCGGGILSEPLARMG--ATVTGIDAVEKNIKIARLHADLDP---ETSTIEYCCTTAEKLVE-EQR-KFDAVI 232 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~--~~v~giD~s~~~l~~a~~~~~~~~---~~~~v~~~~~d~~~l~~-~~~-~fDlv~ 232 (346)
.+.+||=||.|.|..+..++++. .+|+++|+++.+++.+++.+.... -+++++++..|+...-. ... +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 57899999999999999999875 489999999999999998765422 14789999999977542 234 899999
Q ss_pred ecchhcccCC----HHHHHHHHHHhcccCceEEEEecC
Q 019123 233 ASEVIEHVAD----PAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 233 ~~~~l~~~~~----~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
+-..--..+. -.++++.+.++|+|||++++...+
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~ 193 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGS 193 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccC
Confidence 7443211111 258999999999999999988643
No 205
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.58 E-value=9.4e-07 Score=76.58 Aligned_cols=130 Identities=18% Similarity=0.156 Sum_probs=97.7
Q ss_pred CCeEEEECCCCchhHHHHH--HcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhc
Q 019123 161 GLNIVDVGCGGGILSEPLA--RMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIE 238 (346)
Q Consensus 161 ~~~vLDiG~G~G~~~~~l~--~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~ 238 (346)
+.+++|||+|.|.-+..++ ....+|+.+|....-+...+......++ .|++++++.+|++......||+|++..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~~~~~~D~vtsRA--- 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQEKKQYDVVTSRA--- 143 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhcccccccCcEEEeeh---
Confidence 6899999999999888866 3355799999999888888888887777 789999999999874222299999874
Q ss_pred ccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEEec
Q 019123 239 HVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMAG 318 (346)
Q Consensus 239 ~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~ 318 (346)
+.+...+..-+...||+||.++..-+.... --..+.+..+...||.+..+..
T Consensus 144 -va~L~~l~e~~~pllk~~g~~~~~k~~~~~---------------------------~e~~e~~~a~~~~~~~~~~~~~ 195 (215)
T COG0357 144 -VASLNVLLELCLPLLKVGGGFLAYKGLAGK---------------------------DELPEAEKAILPLGGQVEKVFS 195 (215)
T ss_pred -ccchHHHHHHHHHhcccCCcchhhhHHhhh---------------------------hhHHHHHHHHHhhcCcEEEEEE
Confidence 346778888899999999987644221100 0115677788888999887765
Q ss_pred cccC
Q 019123 319 FVYN 322 (346)
Q Consensus 319 ~~~~ 322 (346)
+...
T Consensus 196 ~~~p 199 (215)
T COG0357 196 LTVP 199 (215)
T ss_pred eecC
Confidence 5443
No 206
>PRK04148 hypothetical protein; Provisional
Probab=98.57 E-value=7.6e-07 Score=71.21 Aligned_cols=95 Identities=18% Similarity=0.165 Sum_probs=68.5
Q ss_pred CCCeEEEECCCCch-hHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccccc-CCceeEEEecchh
Q 019123 160 EGLNIVDVGCGGGI-LSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEE-QRKFDAVIASEVI 237 (346)
Q Consensus 160 ~~~~vLDiG~G~G~-~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~fDlv~~~~~l 237 (346)
.+.+|||||||+|. ++..|.+.|.+|+++|+++..++.+++.. +.++.+|+.+.... =..+|+|.+..
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~--------~~~v~dDlf~p~~~~y~~a~liysir-- 85 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLG--------LNAFVDDLFNPNLEIYKNAKLIYSIR-- 85 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC--------CeEEECcCCCCCHHHHhcCCEEEEeC--
Confidence 45799999999995 99999999999999999999999887753 67888998765431 24589998753
Q ss_pred cccCCHHHHHHHHHHhcccCceEEEEecCc
Q 019123 238 EHVADPAEFCKSLSALTVSEGATVISTINR 267 (346)
Q Consensus 238 ~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~ 267 (346)
--++.+..+.++.+-+ |.-+++..++.
T Consensus 86 -pp~el~~~~~~la~~~--~~~~~i~~l~~ 112 (134)
T PRK04148 86 -PPRDLQPFILELAKKI--NVPLIIKPLSG 112 (134)
T ss_pred -CCHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 2223444444554433 56677765543
No 207
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.56 E-value=7.8e-07 Score=72.51 Aligned_cols=102 Identities=31% Similarity=0.488 Sum_probs=74.7
Q ss_pred EEEECCCCchhHHHHHHc---CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccc--ccccC-CceeEEEecchh
Q 019123 164 IVDVGCGGGILSEPLARM---GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEK--LVEEQ-RKFDAVIASEVI 237 (346)
Q Consensus 164 vLDiG~G~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~--l~~~~-~~fDlv~~~~~l 237 (346)
+||+|||+|... .+... +..++|+|+++.++..++..... .....+.+...+... +++.. ..||++ +....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeee
Confidence 999999999965 33333 34899999999999985554432 211116788888776 66655 489999 55544
Q ss_pred cccCCHHHHHHHHHHhcccCceEEEEecCcc
Q 019123 238 EHVADPAEFCKSLSALTVSEGATVISTINRS 268 (346)
Q Consensus 238 ~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~ 268 (346)
.+..+....+.++.++|+|+|.+++......
T Consensus 129 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 129 LHLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred hhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 4444488899999999999999999887643
No 208
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=98.54 E-value=2e-06 Score=77.08 Aligned_cols=149 Identities=15% Similarity=0.136 Sum_probs=100.4
Q ss_pred CCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhh---ccC------------------------------
Q 019123 159 FEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHA---DLD------------------------------ 205 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~---~~~------------------------------ 205 (346)
....+||--|||.|+++..++..|..+-|-++|--|+--..=.+ ...
T Consensus 149 r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 149 RTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred ccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 45679999999999999999999999999999988874322111 100
Q ss_pred ------CCCCceEEEEcCcccccc---cCCceeEEEecchhcccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHH
Q 019123 206 ------PETSTIEYCCTTAEKLVE---EQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAI 276 (346)
Q Consensus 206 ------~~~~~v~~~~~d~~~l~~---~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~ 276 (346)
+.........+|+.+.-. ..++||+|+..+.|....+..++|..++.+|||||+++=+.+-.-.
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYH------- 301 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYH------- 301 (369)
T ss_pred cccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeee-------
Confidence 000112234455544322 1347999999999998889999999999999999998765432100
Q ss_pred HHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEEeccc
Q 019123 277 IAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMAGFV 320 (346)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~ 320 (346)
+.-......+-.--++.+++..+++.-||++++.+++.
T Consensus 302 ------F~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~~Id 339 (369)
T KOG2798|consen 302 ------FEDTHGVENEMSIELSLEDLKRVASHRGFEVEKERGID 339 (369)
T ss_pred ------ccCCCCCcccccccccHHHHHHHHHhcCcEEEEeeeee
Confidence 00000000111224688999999999999999866553
No 209
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.52 E-value=8.6e-07 Score=86.11 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=86.7
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHc---CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-ccCCceeEEE
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARM---GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-EEQRKFDAVI 232 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-~~~~~fDlv~ 232 (346)
.+.++.+|||+++|.|.-+..++.. ...|+++|+++..++..++++...++ .++.+...|...+. .....||.|+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCchhhhhhhchhhcCeEE
Confidence 4568899999999999999998876 24899999999999999999998887 67888889987764 2245799999
Q ss_pred e----cc--hhcccCCH----------------HHHHHHHHHhcccCceEEEEecCc
Q 019123 233 A----SE--VIEHVADP----------------AEFCKSLSALTVSEGATVISTINR 267 (346)
Q Consensus 233 ~----~~--~l~~~~~~----------------~~~l~~~~r~LkpgG~~~~~~~~~ 267 (346)
+ +. ++..-++. .++|..+.+.|||||+++-++.+-
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 4 32 33222211 368999999999999999887653
No 210
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=2e-06 Score=71.27 Aligned_cols=123 Identities=17% Similarity=0.261 Sum_probs=91.1
Q ss_pred CCeEEEECCCCchhHHHHHHc---CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchh
Q 019123 161 GLNIVDVGCGGGILSEPLARM---GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVI 237 (346)
Q Consensus 161 ~~~vLDiG~G~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l 237 (346)
+..+||||||+|..+-.|+.. +.-+.++|+|+.+++...+.+..++ .++..++.|...--. .++.|+++.+--.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~--~~~~~V~tdl~~~l~-~~~VDvLvfNPPY 120 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR--VHIDVVRTDLLSGLR-NESVDVLVFNPPY 120 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC--CccceeehhHHhhhc-cCCccEEEECCCc
Confidence 678999999999999988876 3479999999999999888887776 357888888765433 3789988875311
Q ss_pred ----------ccc-------CC----HHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccC
Q 019123 238 ----------EHV-------AD----PAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSF 296 (346)
Q Consensus 238 ----------~~~-------~~----~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (346)
+++ .+ .+.++..+-.+|.|.|.|++.....
T Consensus 121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~----------------------------- 171 (209)
T KOG3191|consen 121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA----------------------------- 171 (209)
T ss_pred CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh-----------------------------
Confidence 110 11 2456777778889999999886432
Q ss_pred CCHHHHHHHHHHCCCcEEE
Q 019123 297 LTPEELVLILQRASIDVKE 315 (346)
Q Consensus 297 ~~~~~~~~ll~~aGF~~v~ 315 (346)
-.++++..+++.-||.+..
T Consensus 172 N~p~ei~k~l~~~g~~~~~ 190 (209)
T KOG3191|consen 172 NKPKEILKILEKKGYGVRI 190 (209)
T ss_pred cCHHHHHHHHhhcccceeE
Confidence 2347888889999988643
No 211
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=1.5e-07 Score=74.92 Aligned_cols=80 Identities=23% Similarity=0.296 Sum_probs=67.1
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHcCC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecc
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASE 235 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~ 235 (346)
+...+++++|+|||.|.+++..+-.+. .|.|+||.+++++.+++++....+ ++.++++|+.++.+..+.||.++.+-
T Consensus 45 gdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 45 GDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred ccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCCeEeeEEecC
Confidence 445889999999999999977766555 799999999999999998877653 67899999998877778999999875
Q ss_pred hhc
Q 019123 236 VIE 238 (346)
Q Consensus 236 ~l~ 238 (346)
-+.
T Consensus 123 pFG 125 (185)
T KOG3420|consen 123 PFG 125 (185)
T ss_pred CCC
Confidence 443
No 212
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.41 E-value=4.8e-06 Score=72.19 Aligned_cols=120 Identities=13% Similarity=0.108 Sum_probs=84.7
Q ss_pred EEEECCCCchhHHHHHHcCC--eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhcccC
Q 019123 164 IVDVGCGGGILSEPLARMGA--TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEHVA 241 (346)
Q Consensus 164 vLDiG~G~G~~~~~l~~~~~--~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~~~ 241 (346)
|.||||--|.+...|++.|. .++++|+++..++.|++++...++..++++..+|..+.-.+....|+|+...+=..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~-- 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGE-- 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HH--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHH--
Confidence 68999999999999999987 79999999999999999999999888999999996543223333788887643221
Q ss_pred CHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEE
Q 019123 242 DPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEM 316 (346)
Q Consensus 242 ~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (346)
-+..+|......++....|++.-. .....++.+|.+.||.++.-
T Consensus 79 lI~~ILe~~~~~~~~~~~lILqP~-------------------------------~~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 79 LIIEILEAGPEKLSSAKRLILQPN-------------------------------THAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp HHHHHHHHTGGGGTT--EEEEEES-------------------------------S-HHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHhhHHHhccCCeEEEeCC-------------------------------CChHHHHHHHHHCCCEEEEe
Confidence 245667766666665555555422 23468899999999999863
No 213
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.40 E-value=3.4e-06 Score=79.78 Aligned_cols=98 Identities=21% Similarity=0.288 Sum_probs=82.2
Q ss_pred CCeEEEECCCCchhHHHHHHc--CC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc-cCCceeEEEecch
Q 019123 161 GLNIVDVGCGGGILSEPLARM--GA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE-EQRKFDAVIASEV 236 (346)
Q Consensus 161 ~~~vLDiG~G~G~~~~~l~~~--~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~fDlv~~~~~ 236 (346)
+.+|||+.||+|..++.++.. |. +|+++|+++.+++.+++++..++. .++.+++.|+..+-. ....||+|.+.-
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~-~~~~v~~~Da~~~l~~~~~~fDvIdlDP- 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV-ENIEVPNEDAANVLRYRNRKFHVIDIDP- 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEchhHHHHHHHhCCCCCEEEeCC-
Confidence 468999999999999999987 44 899999999999999999987766 468899999877642 235799998754
Q ss_pred hcccCCHHHHHHHHHHhcccCceEEEE
Q 019123 237 IEHVADPAEFCKSLSALTVSEGATVIS 263 (346)
Q Consensus 237 l~~~~~~~~~l~~~~r~LkpgG~~~~~ 263 (346)
. ..+..++..+.+.+++||++++.
T Consensus 123 f---Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 123 F---GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred C---CCcHHHHHHHHHhcccCCEEEEE
Confidence 2 45568999999999999999997
No 214
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.40 E-value=6.2e-07 Score=74.37 Aligned_cols=72 Identities=26% Similarity=0.391 Sum_probs=56.7
Q ss_pred eEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc--cCCc-eeEEEec
Q 019123 163 NIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE--EQRK-FDAVIAS 234 (346)
Q Consensus 163 ~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~--~~~~-fDlv~~~ 234 (346)
.|||+.||.|..++.++.....|+++|+++..++.++.++...++..++.|+++|+.++.. .... +|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999999999889999999999999999999999888899999999987642 2222 8999974
No 215
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.39 E-value=5.7e-06 Score=69.84 Aligned_cols=108 Identities=17% Similarity=0.111 Sum_probs=83.8
Q ss_pred CCCCeEEEECCCCchhHHHHHHcCC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-ccCC--ceeEEEec
Q 019123 159 FEGLNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-EEQR--KFDAVIAS 234 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-~~~~--~fDlv~~~ 234 (346)
..+.++||+-+|+|.+++..+.+|+ .++.+|.+...+...++++...++..++.++..|+.... .... .||+|+.-
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 4788999999999999999999987 899999999999999999988887788999999987431 1222 49999985
Q ss_pred chhc-ccCCHHHHHHH--HHHhcccCceEEEEecC
Q 019123 235 EVIE-HVADPAEFCKS--LSALTVSEGATVISTIN 266 (346)
Q Consensus 235 ~~l~-~~~~~~~~l~~--~~r~LkpgG~~~~~~~~ 266 (346)
--.+ .+.+....+.. -...|+|+|.++|....
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 4443 12222333333 45679999999988654
No 216
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.39 E-value=5.3e-06 Score=71.58 Aligned_cols=102 Identities=16% Similarity=0.157 Sum_probs=84.1
Q ss_pred CCCeEEEECCCCchhHHHHHHc---CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccc-c-----ccCCceeE
Q 019123 160 EGLNIVDVGCGGGILSEPLARM---GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKL-V-----EEQRKFDA 230 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l-~-----~~~~~fDl 230 (346)
.++++||||.=||..+..++.. +.+|+++|++++..+.+.+..+..+...+|+++++++.+. + .+.++||+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 6789999999999988888765 6699999999999999999888888889999999998542 2 24689999
Q ss_pred EEecchhcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 231 VIASEVIEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 231 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
+++-. .=.+....+.++.++||+||++++.-
T Consensus 153 aFvDa---dK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 153 AFVDA---DKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEEcc---chHHHHHHHHHHHhhcccccEEEEec
Confidence 98753 11234478899999999999999864
No 217
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=98.38 E-value=6.1e-06 Score=69.14 Aligned_cols=174 Identities=17% Similarity=0.169 Sum_probs=106.4
Q ss_pred CCCCCCCeEEEECCCCchhHHHHHHc-CC--eEEEEcCChHHH----HHHHH-hhccCCCCCceEEEEcCcccccccCCc
Q 019123 156 ARPFEGLNIVDVGCGGGILSEPLARM-GA--TVTGIDAVEKNI----KIARL-HADLDPETSTIEYCCTTAEKLVEEQRK 227 (346)
Q Consensus 156 ~~~~~~~~vLDiG~G~G~~~~~l~~~-~~--~v~giD~s~~~l----~~a~~-~~~~~~~~~~v~~~~~d~~~l~~~~~~ 227 (346)
.+.+++..|+|+-.|.|+|+..++.. |. .|+++=..+... ...+. .+.....-.|++.+..+...+. +.+.
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~ 122 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQK 122 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCc
Confidence 57789999999999999999999876 22 566665443211 10110 1111111234445544444444 3445
Q ss_pred eeEEEecchhc--cc-----CCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHH
Q 019123 228 FDAVIASEVIE--HV-----ADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPE 300 (346)
Q Consensus 228 fDlv~~~~~l~--~~-----~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (346)
.|++.....-+ |. .....+...+++.|||||++++.+.......... ..+.....+..
T Consensus 123 ~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~---------------dt~~~~ri~~a 187 (238)
T COG4798 123 LDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLS---------------DTITLHRIDPA 187 (238)
T ss_pred ccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChh---------------hhhhhcccChH
Confidence 56665432221 11 2345789999999999999999987543211000 00112356778
Q ss_pred HHHHHHHHCCCcEEEEeccccCCCC--Ccee---eccCCceeEEEEeeeC
Q 019123 301 ELVLILQRASIDVKEMAGFVYNPLT--GRWS---LSDDISVNFIAFGTKN 345 (346)
Q Consensus 301 ~~~~ll~~aGF~~v~~~~~~~~~~~--~~~~---~~~~~~~~~l~~~rk~ 345 (346)
.+....+.+||+...-..+.-+|-. +.|- +.+.++-.|+..+||.
T Consensus 188 ~V~a~veaaGFkl~aeS~ilaNp~D~~~i~v~dp~~rGetDrf~~kF~Kp 237 (238)
T COG4798 188 VVIAEVEAAGFKLEAESEILANPDDPRGIWVFDPTIRGETDRFTLKFRKP 237 (238)
T ss_pred HHHHHHHhhcceeeeeehhhcCCCCCCceeecCccccCccceeEEEeecC
Confidence 8999999999998876666555433 3342 5568888899998885
No 218
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=4.7e-06 Score=74.17 Aligned_cols=76 Identities=24% Similarity=0.222 Sum_probs=64.2
Q ss_pred CCCCCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCC-ceeEEEec
Q 019123 156 ARPFEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQR-KFDAVIAS 234 (346)
Q Consensus 156 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~-~fDlv~~~ 234 (346)
+...++..|||||+|.|.++..|++.+..|+++|+++.+++..+++... ..+++++.+|+...+++.- .++.|+++
T Consensus 26 a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~---~~n~~vi~~DaLk~d~~~l~~~~~vVaN 102 (259)
T COG0030 26 ANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAP---YDNLTVINGDALKFDFPSLAQPYKVVAN 102 (259)
T ss_pred cCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhccc---ccceEEEeCchhcCcchhhcCCCEEEEc
Confidence 3556688999999999999999999999999999999999999998762 2689999999998877542 46666654
No 219
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.34 E-value=1e-06 Score=75.16 Aligned_cols=95 Identities=20% Similarity=0.218 Sum_probs=62.9
Q ss_pred CCCeEEEECCCCchhHHHHHHcC---CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc--------cc--CC
Q 019123 160 EGLNIVDVGCGGGILSEPLARMG---ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV--------EE--QR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~---~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~--------~~--~~ 226 (346)
.+.+|||+||++|.|+..+++++ ..|+|+|+.+. .. . .++.++++|+.+.. .. ..
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~--~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~ 90 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DP--L-QNVSFIQGDITNPENIKDIRKLLPESGE 90 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS----TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------cc--c-cceeeeecccchhhHHHhhhhhcccccc
Confidence 45899999999999999999998 69999999874 11 1 34566666654321 11 26
Q ss_pred ceeEEEecchhcccCC-----------HHHHHHHHHHhcccCceEEEEecC
Q 019123 227 KFDAVIASEVIEHVAD-----------PAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 227 ~fDlv~~~~~l~~~~~-----------~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
.+|+|+|-.+.....+ ....+.-+...|+|||.|++-.+.
T Consensus 91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 8999999774332222 123555666789999999998765
No 220
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.34 E-value=5.9e-06 Score=75.19 Aligned_cols=107 Identities=21% Similarity=0.206 Sum_probs=70.7
Q ss_pred CCCCCeEEEECCCCchhHHHHHHc---CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEec
Q 019123 158 PFEGLNIVDVGCGGGILSEPLARM---GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIAS 234 (346)
Q Consensus 158 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~ 234 (346)
...+.+|||+|||+|.-+..+.+. -.+++++|.|+.|++.++..+..........+......+. .+-...|+|+++
T Consensus 31 ~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~DLvi~s 109 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDF-LPFPPDDLVIAS 109 (274)
T ss_pred CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccc-ccCCCCcEEEEe
Confidence 346779999999999876666543 3489999999999999988766543211111111111111 111234999999
Q ss_pred chhcccCC--HHHHHHHHHHhcccCceEEEEecCc
Q 019123 235 EVIEHVAD--PAEFCKSLSALTVSEGATVISTINR 267 (346)
Q Consensus 235 ~~l~~~~~--~~~~l~~~~r~LkpgG~~~~~~~~~ 267 (346)
++|..+++ ...+++.+.+.+.+ .|++.|+.-
T Consensus 110 ~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt 142 (274)
T PF09243_consen 110 YVLNELPSAARAELVRSLWNKTAP--VLVLVEPGT 142 (274)
T ss_pred hhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCC
Confidence 99998887 23466666666654 888888764
No 221
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=3e-05 Score=73.14 Aligned_cols=111 Identities=25% Similarity=0.273 Sum_probs=86.7
Q ss_pred CCCCCCCeEEEECCCCchhHHHHHHc----CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc--c-CCce
Q 019123 156 ARPFEGLNIVDVGCGGGILSEPLARM----GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE--E-QRKF 228 (346)
Q Consensus 156 ~~~~~~~~vLDiG~G~G~~~~~l~~~----~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~--~-~~~f 228 (346)
+.+.++.+|||++++.|.=+..+++. +..|+++|+++.-++..+.++...++ .++..+..|...++. + .+.|
T Consensus 152 L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~-~nv~~~~~d~~~~~~~~~~~~~f 230 (355)
T COG0144 152 LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV-RNVIVVNKDARRLAELLPGGEKF 230 (355)
T ss_pred cCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC-CceEEEecccccccccccccCcC
Confidence 46778999999999999888888876 34579999999999999999999888 558888888766542 2 2359
Q ss_pred eEEEec------chhcccCCH----------------HHHHHHHHHhcccCceEEEEecCc
Q 019123 229 DAVIAS------EVIEHVADP----------------AEFCKSLSALTVSEGATVISTINR 267 (346)
Q Consensus 229 Dlv~~~------~~l~~~~~~----------------~~~l~~~~r~LkpgG~~~~~~~~~ 267 (346)
|.|++- .+++--++. .++|..+.++|||||.++.++.+.
T Consensus 231 D~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 231 DRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred cEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 999972 244322221 258999999999999999998764
No 222
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=2.7e-05 Score=68.73 Aligned_cols=100 Identities=18% Similarity=0.127 Sum_probs=85.9
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHcC---CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc--cCCceeEE
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARMG---ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE--EQRKFDAV 231 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~--~~~~fDlv 231 (346)
...|+.+|||-|.|+|.++..++... .+++-+|+-..-.+.+.+.+...++++++.+.+-|+...-+ .+..+|.|
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaV 181 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAV 181 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceE
Confidence 56789999999999999999998873 38999999998899999999999999999999999977654 46778888
Q ss_pred EecchhcccCCHHHHHHHHHHhcccCceEE
Q 019123 232 IASEVIEHVADPAEFCKSLSALTVSEGATV 261 (346)
Q Consensus 232 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~ 261 (346)
+. .++.|..++-.++.+||.+|.-+
T Consensus 182 FL-----DlPaPw~AiPha~~~lk~~g~r~ 206 (314)
T KOG2915|consen 182 FL-----DLPAPWEAIPHAAKILKDEGGRL 206 (314)
T ss_pred EE-----cCCChhhhhhhhHHHhhhcCceE
Confidence 76 56889999999999999877433
No 223
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.31 E-value=1.3e-05 Score=71.43 Aligned_cols=171 Identities=19% Similarity=0.168 Sum_probs=96.6
Q ss_pred CeEEEECCCCc--hhHHHHHHc---CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc--c----cCCcee-
Q 019123 162 LNIVDVGCGGG--ILSEPLARM---GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV--E----EQRKFD- 229 (346)
Q Consensus 162 ~~vLDiG~G~G--~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~--~----~~~~fD- 229 (346)
..+||||||-- .....+++. .++|+-+|.+|-.+..++..+..++- ....++++|+.+.. + -.+-+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 58999999954 344445443 67999999999999999988776532 34889999987642 0 012233
Q ss_pred ----EEEecchhcccCC---HHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHH
Q 019123 230 ----AVIASEVIEHVAD---PAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEEL 302 (346)
Q Consensus 230 ----lv~~~~~l~~~~~---~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (346)
.|++..++++++| +..++..++..|.||.+|+++.................+.. .+. ...+.+.+++
T Consensus 149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~----~~~--~~~~Rs~~ei 222 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQ----AGS--PGRPRSREEI 222 (267)
T ss_dssp TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHH----CCS------B-HHHH
T ss_pred CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHc----CCC--CceecCHHHH
Confidence 5667778888865 77899999999999999999987665433221111111111 111 1346799999
Q ss_pred HHHHHHCCCcEEEEeccccCCCCCcee--------eccCCceeEEEEeeeC
Q 019123 303 VLILQRASIDVKEMAGFVYNPLTGRWS--------LSDDISVNFIAFGTKN 345 (346)
Q Consensus 303 ~~ll~~aGF~~v~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~rk~ 345 (346)
..+|. ||++++ .++..- ..|+ ........|-+.+||+
T Consensus 223 ~~~f~--g~elve-PGlv~~---~~WrP~~~~~~~~~~~~~~~~~gVarKp 267 (267)
T PF04672_consen 223 AAFFD--GLELVE-PGLVPV---PRWRPDGPEPDPPDPARVWMYGGVARKP 267 (267)
T ss_dssp HHCCT--TSEE-T-T-SEEG---GGSS-STTTTTT--GGGGSEEEEEEE--
T ss_pred HHHcC--CCccCC-Cceecc---cccCCCCCCcCCCCccceEEEEEEEeCC
Confidence 99985 999875 232221 2333 2345677899999985
No 224
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.30 E-value=1.1e-05 Score=74.46 Aligned_cols=104 Identities=13% Similarity=0.132 Sum_probs=76.2
Q ss_pred CCCeEEEECCCCchhHHHHHHc------CCeEEEEcCChHHHHHHHHhhccCCCCCceEE--EEcCcccc----cc--cC
Q 019123 160 EGLNIVDVGCGGGILSEPLARM------GATVTGIDAVEKNIKIARLHADLDPETSTIEY--CCTTAEKL----VE--EQ 225 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~------~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~--~~~d~~~l----~~--~~ 225 (346)
++..|+|+|||.|.-+..|++. ...++++|+|.++|+.+..++..... +.+.+ +++|..+. +. ..
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF-SHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC-CCeEEEEEEecHHHHHhhccccccc
Confidence 5568999999999877766553 35799999999999999998873333 34444 77777553 21 12
Q ss_pred CceeEEEec-chhcccCCHH--HHHHHHHH-hcccCceEEEEe
Q 019123 226 RKFDAVIAS-EVIEHVADPA--EFCKSLSA-LTVSEGATVIST 264 (346)
Q Consensus 226 ~~fDlv~~~-~~l~~~~~~~--~~l~~~~r-~LkpgG~~~~~~ 264 (346)
....+++.. .+|.+++..+ .+|+.+++ .|+|||.|++..
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 335666654 4899997654 68999999 999999988853
No 225
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.29 E-value=5.6e-07 Score=79.93 Aligned_cols=97 Identities=23% Similarity=0.262 Sum_probs=78.1
Q ss_pred CCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhcc
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEH 239 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~ 239 (346)
.+..+||+|||.|.....- ..+-++|.|++...+..+++.- ......+|+.++|+++.+||.+++..+++|
T Consensus 45 ~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~~-------~~~~~~ad~l~~p~~~~s~d~~lsiavihh 115 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRSG-------GDNVCRADALKLPFREESFDAALSIAVIHH 115 (293)
T ss_pred CcceeeecccCCcccCcCC--CcceeeecchhhhhccccccCC-------CceeehhhhhcCCCCCCccccchhhhhhhh
Confidence 4789999999999654321 2346999999988777665532 125788899999999999999999999999
Q ss_pred cCCH---HHHHHHHHHhcccCceEEEEec
Q 019123 240 VADP---AEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 240 ~~~~---~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
+... ..+++++.|+|+|||..++-.+
T Consensus 116 lsT~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 116 LSTRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred hhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 9753 4799999999999999887655
No 226
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=3.1e-05 Score=67.38 Aligned_cols=163 Identities=15% Similarity=0.131 Sum_probs=104.5
Q ss_pred CCCCCeEEEECCCCchhHHHHHHcCC-eEEEEcCChHHHHHHHHhhccCCCCCceE-EEEcCcccccc--cCCceeEEEe
Q 019123 158 PFEGLNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIKIARLHADLDPETSTIE-YCCTTAEKLVE--EQRKFDAVIA 233 (346)
Q Consensus 158 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~-~~~~d~~~l~~--~~~~fDlv~~ 233 (346)
..++..+||||+.||.++..+++.|+ .|+++|..-..+..--+. . +++. +...|+..+.. -.+..|+++|
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~---d---~rV~~~E~tN~r~l~~~~~~~~~d~~v~ 150 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN---D---PRVIVLERTNVRYLTPEDFTEKPDLIVI 150 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc---C---CcEEEEecCChhhCCHHHcccCCCeEEE
Confidence 34788999999999999999999987 899999987655433221 1 3333 44556655531 1236789998
Q ss_pred cchhcccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcE
Q 019123 234 SEVIEHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDV 313 (346)
Q Consensus 234 ~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~ 313 (346)
--.+. +...+|..+..+|+|+|.++...--. +......-.....+. ... .+..-..++.+++.+.||.+
T Consensus 151 DvSFI---SL~~iLp~l~~l~~~~~~~v~LvKPQ-----FEagr~~v~kkGvv~-d~~--~~~~v~~~i~~~~~~~g~~~ 219 (245)
T COG1189 151 DVSFI---SLKLILPALLLLLKDGGDLVLLVKPQ-----FEAGREQVGKKGVVR-DPK--LHAEVLSKIENFAKELGFQV 219 (245)
T ss_pred Eeehh---hHHHHHHHHHHhcCCCceEEEEecch-----hhhhhhhcCcCceec-Ccc--hHHHHHHHHHHHHhhcCcEE
Confidence 76553 56789999999999999888764211 110000000000111 111 11234478889999999998
Q ss_pred EEEeccccCCCCCceeeccCCceeEEEEeeeC
Q 019123 314 KEMAGFVYNPLTGRWSLSDDISVNFIAFGTKN 345 (346)
Q Consensus 314 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~rk~ 345 (346)
.. +...|..|- .-...|+.+.+|+
T Consensus 220 ~g---l~~Spi~G~-----~GNiE~l~~~~k~ 243 (245)
T COG1189 220 KG---LIKSPIKGG-----KGNIEFLLLLKKS 243 (245)
T ss_pred ee---eEccCccCC-----CCcEeeeeeeecc
Confidence 64 556776663 4466788888775
No 227
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.25 E-value=1.2e-05 Score=73.53 Aligned_cols=142 Identities=19% Similarity=0.237 Sum_probs=98.8
Q ss_pred CCCCeEEEECCCCchhHHHHHHcC--CeEEEEcCChHHHHHHHHh--hcc---CC-CCCceEEEEcCcccccc-cCCcee
Q 019123 159 FEGLNIVDVGCGGGILSEPLARMG--ATVTGIDAVEKNIKIARLH--ADL---DP-ETSTIEYCCTTAEKLVE-EQRKFD 229 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~~--~~v~giD~s~~~l~~a~~~--~~~---~~-~~~~v~~~~~d~~~l~~-~~~~fD 229 (346)
....+||-+|+|.|--+..+.+.. .+++-+|++|.|++.+++. ... .. .+++++++..|+.++-. ..+.||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 345789999999999999999873 3899999999999999843 221 11 25789999999877643 456899
Q ss_pred EEEecchhcccCCH-----HHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHH---H
Q 019123 230 AVIASEVIEHVADP-----AEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPE---E 301 (346)
Q Consensus 230 lv~~~~~l~~~~~~-----~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 301 (346)
.|++..---.-+.. .++..-+.+.|+++|.+++..-++- ++++ .
T Consensus 368 ~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y----------------------------~tp~vfw~ 419 (508)
T COG4262 368 VVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPY----------------------------FTPRVFWR 419 (508)
T ss_pred EEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCc----------------------------cCCceeee
Confidence 99985311111111 3678888999999999999865431 1111 3
Q ss_pred HHHHHHHCCCcEEEEeccccCCCCCceee
Q 019123 302 LVLILQRASIDVKEMAGFVYNPLTGRWSL 330 (346)
Q Consensus 302 ~~~ll~~aGF~~v~~~~~~~~~~~~~~~~ 330 (346)
+..-+++|||.+.-+. .+-|-.|.|+.
T Consensus 420 i~aTik~AG~~~~Pyh--v~VPTFGeWGf 446 (508)
T COG4262 420 IDATIKSAGYRVWPYH--VHVPTFGEWGF 446 (508)
T ss_pred ehhHHHhCcceeeeeE--EecCcccccce
Confidence 4567888998876443 34555566763
No 228
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.20 E-value=5.1e-06 Score=75.82 Aligned_cols=78 Identities=18% Similarity=0.095 Sum_probs=64.4
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHcC---CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc--cCC--cee
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARMG---ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE--EQR--KFD 229 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~--~~~--~fD 229 (346)
.+.++..+||++||.|..+..+++.. .+|+|+|.++.|++.+++++.. ..++.++++|+.++.. +.+ ++|
T Consensus 16 ~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~~~~vD 92 (296)
T PRK00050 16 AIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEGLGKVD 92 (296)
T ss_pred CCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcCCCccC
Confidence 34567899999999999999999873 5899999999999999988765 2689999999988752 222 799
Q ss_pred EEEecchh
Q 019123 230 AVIASEVI 237 (346)
Q Consensus 230 lv~~~~~l 237 (346)
.|++..++
T Consensus 93 gIl~DLGv 100 (296)
T PRK00050 93 GILLDLGV 100 (296)
T ss_pred EEEECCCc
Confidence 99986644
No 229
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.17 E-value=6e-07 Score=72.31 Aligned_cols=102 Identities=16% Similarity=0.123 Sum_probs=65.8
Q ss_pred eEEEEcCcccccccCCceeEEEecchhcccCCHH--HHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCC
Q 019123 211 IEYCCTTAEKLVEEQRKFDAVIASEVIEHVADPA--EFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPK 288 (346)
Q Consensus 211 v~~~~~d~~~l~~~~~~fDlv~~~~~l~~~~~~~--~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (346)
+.+++-.....++.+++.|+|++.++++|++-.+ .++++++++|||||++.|..++........ ....+..+--+.
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y--~~~vqvggpgpn 108 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLY--QHDVQVGGPGPN 108 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHH--hhhhhccCCCCC
Confidence 3344333344567899999999999999998543 689999999999999999998765432211 011111111122
Q ss_pred CccccccCCCHHHHHHHHHHCCCcEE
Q 019123 289 GTHQWSSFLTPEELVLILQRASIDVK 314 (346)
Q Consensus 289 ~~~~~~~~~~~~~~~~ll~~aGF~~v 314 (346)
+.+.++...+...+.+++.++||.+-
T Consensus 109 dhP~~r~v~t~r~m~n~~m~~~~~~k 134 (185)
T COG4627 109 DHPLHRIVKTMRMMFNGFMDAGFVVK 134 (185)
T ss_pred CCcHHHHHHHHHHHHHHHHhhhheeh
Confidence 22233333466777788888888753
No 230
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.14 E-value=8.2e-06 Score=68.59 Aligned_cols=107 Identities=20% Similarity=0.293 Sum_probs=85.6
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHcCC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecc
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASE 235 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~ 235 (346)
..-.+++|||+|+|+|..++..+..|+ .|+..|+.+......+-+++.++ ..+.|...|.-. .+..||+|+...
T Consensus 76 etVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang--v~i~~~~~d~~g---~~~~~Dl~LagD 150 (218)
T COG3897 76 ETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG--VSILFTHADLIG---SPPAFDLLLAGD 150 (218)
T ss_pred cccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc--ceeEEeeccccC---CCcceeEEEeec
Confidence 445788999999999999999998887 89999999988888888888887 468888877655 356799999999
Q ss_pred hhcccCCHHHHHHHHHHhcccCceEEEEecCcc
Q 019123 236 VIEHVADPAEFCKSLSALTVSEGATVISTINRS 268 (346)
Q Consensus 236 ~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~ 268 (346)
++.+-+--..++....++...|-.+++.++.+.
T Consensus 151 lfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~ 183 (218)
T COG3897 151 LFYNHTEADRLIPWKDRLAEAGAAVLVGDPGRA 183 (218)
T ss_pred eecCchHHHHHHHHHHHHHhCCCEEEEeCCCCC
Confidence 988776666777855555566667777776654
No 231
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=4.9e-05 Score=65.16 Aligned_cols=98 Identities=13% Similarity=0.084 Sum_probs=70.8
Q ss_pred CCCCCeEEEECCCCchhHHHHHHcCC---eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc--------ccCC
Q 019123 158 PFEGLNIVDVGCGGGILSEPLARMGA---TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV--------EEQR 226 (346)
Q Consensus 158 ~~~~~~vLDiG~G~G~~~~~l~~~~~---~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~--------~~~~ 226 (346)
..++.+|+|+|+..|.|+..+++... .|+++|+.| +... +++.++++|+.... ....
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p---------~~~~---~~V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP---------MKPI---PGVIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc---------cccC---CCceEEeeeccCccHHHHHHHHcCCC
Confidence 34679999999999999999988733 499999987 3322 45999999986643 2344
Q ss_pred ceeEEEecchh--------cccCC---HHHHHHHHHHhcccCceEEEEecCc
Q 019123 227 KFDAVIASEVI--------EHVAD---PAEFCKSLSALTVSEGATVISTINR 267 (346)
Q Consensus 227 ~fDlv~~~~~l--------~~~~~---~~~~l~~~~r~LkpgG~~~~~~~~~ 267 (346)
.+|+|++-..= +|... ...++.-+..+|+|||.|++-.+-.
T Consensus 111 ~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred CcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 57999975422 12111 1246777788999999999987743
No 232
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.12 E-value=3.2e-05 Score=79.52 Aligned_cols=110 Identities=18% Similarity=0.165 Sum_probs=81.1
Q ss_pred CCCCeEEEECCCCchhHHHHHHc--------------------------------------------CCeEEEEcCChHH
Q 019123 159 FEGLNIVDVGCGGGILSEPLARM--------------------------------------------GATVTGIDAVEKN 194 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~--------------------------------------------~~~v~giD~s~~~ 194 (346)
.++..++|.+||+|.+++..+.. ..+++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 35679999999999998876541 1269999999999
Q ss_pred HHHHHHhhccCCCCCceEEEEcCccccccc--CCceeEEEecchhc-ccC---CHHHHHHHHHHhcc---cCceEEEEec
Q 019123 195 IKIARLHADLDPETSTIEYCCTTAEKLVEE--QRKFDAVIASEVIE-HVA---DPAEFCKSLSALTV---SEGATVISTI 265 (346)
Q Consensus 195 l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~--~~~fDlv~~~~~l~-~~~---~~~~~l~~~~r~Lk---pgG~~~~~~~ 265 (346)
++.|+.++...++...+.|.++|+.+++.+ .++||+|+++--.. .+. +...+.+.+.+.|| +|+.+++...
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 999999999998877899999999887643 35799999974221 121 22344444444444 8988888776
Q ss_pred Ccc
Q 019123 266 NRS 268 (346)
Q Consensus 266 ~~~ 268 (346)
+..
T Consensus 349 ~~~ 351 (702)
T PRK11783 349 SPE 351 (702)
T ss_pred CHH
Confidence 543
No 233
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.12 E-value=1.3e-05 Score=74.29 Aligned_cols=110 Identities=20% Similarity=0.252 Sum_probs=73.2
Q ss_pred CCCCCCeEEEECCCCchhHHHHHH---------cCCeEEEEcCChHHHHHHHHhhccCCCC-CceEEEEcCccccccc--
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLAR---------MGATVTGIDAVEKNIKIARLHADLDPET-STIEYCCTTAEKLVEE-- 224 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~---------~~~~v~giD~s~~~l~~a~~~~~~~~~~-~~v~~~~~d~~~l~~~-- 224 (346)
.+.++.+|||.+||+|.+...+.+ ....++|+|+++.++..++-++.-.+.. .+..+...|....+..
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~ 122 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIK 122 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTS
T ss_pred hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccc
Confidence 344677899999999999888776 2458999999999999888765444332 2345778886554432
Q ss_pred CCceeEEEecchhccc--C------------------C-HHHHHHHHHHhcccCceEEEEecC
Q 019123 225 QRKFDAVIASEVIEHV--A------------------D-PAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 225 ~~~fDlv~~~~~l~~~--~------------------~-~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
...||+|+++--+... . . .-.++..+.+.||+||.+.+..++
T Consensus 123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred ccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 4689999985422111 0 0 125789999999999998888764
No 234
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.11 E-value=2e-05 Score=70.98 Aligned_cols=105 Identities=16% Similarity=0.205 Sum_probs=66.8
Q ss_pred CCCeEEEECCCCchhHH-HHHHc---CCeEEEEcCChHHHHHHHHhhc-cCCCCCceEEEEcCcccccccCCceeEEEec
Q 019123 160 EGLNIVDVGCGGGILSE-PLARM---GATVTGIDAVEKNIKIARLHAD-LDPETSTIEYCCTTAEKLVEEQRKFDAVIAS 234 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~-~l~~~---~~~v~giD~s~~~l~~a~~~~~-~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~ 234 (346)
.+.+|+=||||.=-++. .++.. +..|+++|+++++++.+++.+. ..++..++.|+.+|..+....-..||+|+..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 45699999999765544 44433 4579999999999999999877 4566688999999998776545689999987
Q ss_pred chhc-ccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 235 EVIE-HVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 235 ~~l~-~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
.... .-.+..++|..+.+.++||..+++-.
T Consensus 200 alVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 200 ALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 7554 22367789999999999999888763
No 235
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.08 E-value=7.5e-05 Score=71.33 Aligned_cols=102 Identities=22% Similarity=0.381 Sum_probs=85.4
Q ss_pred CeEEEECCCCchhHHHHHHcCC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhccc
Q 019123 162 LNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEHV 240 (346)
Q Consensus 162 ~~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~~ 240 (346)
.++|-+|||.-.++..+.+-|. .|+-+|+|+..++....+..... ..+.+...|+..+.+++.+||+|+.-..++++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~--~~~~~~~~d~~~l~fedESFdiVIdkGtlDal 127 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER--PEMQMVEMDMDQLVFEDESFDIVIDKGTLDAL 127 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC--cceEEEEecchhccCCCcceeEEEecCccccc
Confidence 4999999999999999988887 79999999988887766553222 45889999999999999999999999988876
Q ss_pred CC----------HHHHHHHHHHhcccCceEEEEec
Q 019123 241 AD----------PAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 241 ~~----------~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
-. ....+.++.|+|++||.++....
T Consensus 128 ~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 128 FEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 32 12468899999999999888776
No 236
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=2e-06 Score=69.81 Aligned_cols=134 Identities=13% Similarity=0.111 Sum_probs=92.9
Q ss_pred CCCeEEEECCCCchhHHHHHHc---CCeEEEEcCChHHHHHHHHhhccCCCC--CceEEEEcCcccc--cccCCceeEEE
Q 019123 160 EGLNIVDVGCGGGILSEPLARM---GATVTGIDAVEKNIKIARLHADLDPET--STIEYCCTTAEKL--VEEQRKFDAVI 232 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~--~~v~~~~~d~~~l--~~~~~~fDlv~ 232 (346)
.+.+||++|+|--.++-.|... ...|..+|-+++.++..++....+... ..+..+..+...- ....+.||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 4678999999966655555443 348999999999999888876554211 2222222222111 12466899999
Q ss_pred ecchhcccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCc
Q 019123 233 ASEVIEHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASID 312 (346)
Q Consensus 233 ~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~ 312 (346)
+..++..-..-..+.+.+.+.|+|.|..++..|.+ --+.+.|.+.+..+||.
T Consensus 109 aADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRR----------------------------g~sL~kF~de~~~~gf~ 160 (201)
T KOG3201|consen 109 AADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRR----------------------------GQSLQKFLDEVGTVGFT 160 (201)
T ss_pred eccchhHHHHHHHHHHHHHHHhCcccceeEecCcc----------------------------cchHHHHHHHHHhceeE
Confidence 99888544445678899999999999977775532 34567888899999999
Q ss_pred EEEEecccc
Q 019123 313 VKEMAGFVY 321 (346)
Q Consensus 313 ~v~~~~~~~ 321 (346)
+...+++..
T Consensus 161 v~l~enyde 169 (201)
T KOG3201|consen 161 VCLEENYDE 169 (201)
T ss_pred EEecccHhH
Confidence 887666543
No 237
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.07 E-value=2e-05 Score=72.55 Aligned_cols=88 Identities=22% Similarity=0.235 Sum_probs=67.4
Q ss_pred CCCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchh
Q 019123 158 PFEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVI 237 (346)
Q Consensus 158 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l 237 (346)
..++.++|||||++|.|+..+++.|..|++||..+ |-... .. .++|..+..|......+.+.+|+++|-.+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~~~L----~~---~~~V~h~~~d~fr~~p~~~~vDwvVcDmv- 279 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MAQSL----MD---TGQVEHLRADGFKFRPPRKNVDWLVCDMV- 279 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cCHhh----hC---CCCEEEEeccCcccCCCCCCCCEEEEecc-
Confidence 45789999999999999999999999999999654 32222 11 26788888887655433678999999754
Q ss_pred cccCCHHHHHHHHHHhcccC
Q 019123 238 EHVADPAEFCKSLSALTVSE 257 (346)
Q Consensus 238 ~~~~~~~~~l~~~~r~Lkpg 257 (346)
..|..++.-+.+.|..|
T Consensus 280 ---e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 ---EKPARVAELMAQWLVNG 296 (357)
T ss_pred ---cCHHHHHHHHHHHHhcC
Confidence 36778888888888766
No 238
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.03 E-value=2.3e-05 Score=65.39 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=85.8
Q ss_pred hHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEE
Q 019123 136 TRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCC 215 (346)
Q Consensus 136 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~ 215 (346)
.|...+.+.+.... ...+.|+|.|+|.+++..+...-+|++++.+|.....+.+++.-.+. .|++++.
T Consensus 19 eRlavF~~ai~~va-----------~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~ 86 (252)
T COG4076 19 ERLAVFTSAIAEVA-----------EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGD-VNWEVVV 86 (252)
T ss_pred HHHHHHHHHHHHHh-----------hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCC-cceEEEe
Confidence 34555666665542 36899999999999999888866999999999999999999766665 7899999
Q ss_pred cCcccccccCCceeEEEecchhccc--CCHHHHHHHHHHhcccCceEEEE
Q 019123 216 TTAEKLVEEQRKFDAVIASEVIEHV--ADPAEFCKSLSALTVSEGATVIS 263 (346)
Q Consensus 216 ~d~~~l~~~~~~fDlv~~~~~l~~~--~~~~~~l~~~~r~LkpgG~~~~~ 263 (346)
+|+.+..+ ...|+|+|-..-..+ .....+++.+...||-++.++-.
T Consensus 87 gDA~~y~f--e~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 87 GDARDYDF--ENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred cccccccc--cccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccccH
Confidence 99998876 357999885422111 11235677777788888877654
No 239
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=9.9e-06 Score=77.46 Aligned_cols=83 Identities=24% Similarity=0.302 Sum_probs=69.2
Q ss_pred cccChhHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCc
Q 019123 131 HALNPTRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETST 210 (346)
Q Consensus 131 ~~~n~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~ 210 (346)
.+.|....+.+...+.++ +....+..+||+.||||.++..++.....|+|++++++++.-|+.+++.+++ .|
T Consensus 361 FQ~Nt~~aevLys~i~e~-------~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngi-sN 432 (534)
T KOG2187|consen 361 FQTNTSAAEVLYSTIGEW-------AGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGI-SN 432 (534)
T ss_pred hccCcHHHHHHHHHHHHH-------hCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCc-cc
Confidence 344545566666666665 3555678999999999999999998888999999999999999999999998 89
Q ss_pred eEEEEcCcccc
Q 019123 211 IEYCCTTAEKL 221 (346)
Q Consensus 211 v~~~~~d~~~l 221 (346)
++|+++-++++
T Consensus 433 a~Fi~gqaE~~ 443 (534)
T KOG2187|consen 433 ATFIVGQAEDL 443 (534)
T ss_pred eeeeecchhhc
Confidence 99999977765
No 240
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.01 E-value=4e-05 Score=62.55 Aligned_cols=101 Identities=17% Similarity=0.183 Sum_probs=71.1
Q ss_pred CCCCeEEEECCCCchhHHHHHH-----c-CCeEEEEcCChHHHHHHHHhhccCC--CCCceEEEEcCcccccccCCceeE
Q 019123 159 FEGLNIVDVGCGGGILSEPLAR-----M-GATVTGIDAVEKNIKIARLHADLDP--ETSTIEYCCTTAEKLVEEQRKFDA 230 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~-----~-~~~v~giD~s~~~l~~a~~~~~~~~--~~~~v~~~~~d~~~l~~~~~~fDl 230 (346)
.+...|+|+|||.|.+++.++. . +.+|+++|.++..++.+.++....+ ...++.+...+...... ....++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 102 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPDI 102 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCeE
Confidence 4678999999999999999998 3 6799999999999999988887765 33566777766554322 445677
Q ss_pred EEecchhcccCCHHHHHHHHHHhcccCceEEEEec
Q 019123 231 VIASEVIEHVADPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 231 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
++..+.-..++ +.+|+.+.+ ++-.+++..+
T Consensus 103 ~vgLHaCG~Ls--~~~l~~~~~---~~~~~l~~vp 132 (141)
T PF13679_consen 103 LVGLHACGDLS--DRALRLFIR---PNARFLVLVP 132 (141)
T ss_pred EEEeecccchH--HHHHHHHHH---cCCCEEEEcC
Confidence 77665554333 345555555 5555555443
No 241
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.01 E-value=3.6e-05 Score=65.61 Aligned_cols=104 Identities=18% Similarity=0.164 Sum_probs=82.8
Q ss_pred CCCCeEEEECCCCchhHHHHHHcCC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc--ccCCceeEEEecc
Q 019123 159 FEGLNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV--EEQRKFDAVIASE 235 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~fDlv~~~~ 235 (346)
.++.+||.||-|-|.+.-.+.++.. +=+.|+..++.++..+...-.. ..||..+.+-.++.. .+++.||-|+--.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeDvl~~L~d~~FDGI~yDT 177 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWEDVLNTLPDKHFDGIYYDT 177 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc--ccceEEEecchHhhhccccccCcceeEeec
Confidence 5788999999999999988877754 6788999999998877654322 267888888777653 4788999998766
Q ss_pred hhcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 236 VIEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 236 ~l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
.-.+..|...+.+.+.|+|||+|+|-...
T Consensus 178 y~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 178 YSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 55666777888999999999999886653
No 242
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.99 E-value=0.00014 Score=68.05 Aligned_cols=109 Identities=24% Similarity=0.234 Sum_probs=81.5
Q ss_pred CCCCCCCeEEEECCCCchhHHHHHHcCC-----------------------------------------eEEEEcCChHH
Q 019123 156 ARPFEGLNIVDVGCGGGILSEPLARMGA-----------------------------------------TVTGIDAVEKN 194 (346)
Q Consensus 156 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~-----------------------------------------~v~giD~s~~~ 194 (346)
++..++..++|--||+|.+++..+-.+. .++|+|+++.+
T Consensus 187 agw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~ 266 (381)
T COG0116 187 AGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRH 266 (381)
T ss_pred cCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHH
Confidence 4566777999999999999988766542 27799999999
Q ss_pred HHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecc--hhcccCC--HH----HHHHHHHHhcccCceEEEEe
Q 019123 195 IKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASE--VIEHVAD--PA----EFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 195 l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~--~l~~~~~--~~----~~l~~~~r~LkpgG~~~~~~ 264 (346)
++.|+.++...++.+.|+|.++|+..+..+-..+|+|+|+- +..--.. .. .+.+.+.+.++--+.+++..
T Consensus 267 i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 267 IEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 99999999999998999999999999875447899999964 3322111 22 33444555555555666554
No 243
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.89 E-value=0.0001 Score=66.63 Aligned_cols=94 Identities=16% Similarity=0.130 Sum_probs=69.3
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccC---CceeEEEe
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQ---RKFDAVIA 233 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~---~~fDlv~~ 233 (346)
...++..|||||+|+|.++..|++.+.+|+++|+++.+.+..++++... ++++++.+|+.++..+. +...+|+.
T Consensus 27 ~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~---~~~~vi~~D~l~~~~~~~~~~~~~~vv~ 103 (262)
T PF00398_consen 27 DLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASN---PNVEVINGDFLKWDLYDLLKNQPLLVVG 103 (262)
T ss_dssp TCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTC---SSEEEEES-TTTSCGGGHCSSSEEEEEE
T ss_pred CCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhc---ccceeeecchhccccHHhhcCCceEEEE
Confidence 3447889999999999999999999999999999999999999987632 68999999999887543 34455555
Q ss_pred cchhcccCCHHHHHHHHHHhccc
Q 019123 234 SEVIEHVADPAEFCKSLSALTVS 256 (346)
Q Consensus 234 ~~~l~~~~~~~~~l~~~~r~Lkp 256 (346)
+.-. ++. ..++..+...-+.
T Consensus 104 NlPy-~is--~~il~~ll~~~~~ 123 (262)
T PF00398_consen 104 NLPY-NIS--SPILRKLLELYRF 123 (262)
T ss_dssp EETG-TGH--HHHHHHHHHHGGG
T ss_pred Eecc-cch--HHHHHHHhhcccc
Confidence 4322 222 3455555553333
No 244
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.88 E-value=8.9e-05 Score=67.76 Aligned_cols=109 Identities=22% Similarity=0.220 Sum_probs=85.3
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHc---CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc--ccCCceeEE
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARM---GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV--EEQRKFDAV 231 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~fDlv 231 (346)
.+.++..|||++++.|.-+..+++. ...|++.|+++.-+...+.++...+. .++.....|..... .....||.|
T Consensus 82 ~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-FNVIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--SSEEEEESHHHHHHHHHHTTTEEEE
T ss_pred cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC-ceEEEEeeccccccccccccccchh
Confidence 4568889999999999998888876 34899999999999999999988887 67888878877663 234569999
Q ss_pred Eec------chhcccCCH----------------HHHHHHHHHhc----ccCceEEEEecC
Q 019123 232 IAS------EVIEHVADP----------------AEFCKSLSALT----VSEGATVISTIN 266 (346)
Q Consensus 232 ~~~------~~l~~~~~~----------------~~~l~~~~r~L----kpgG~~~~~~~~ 266 (346)
++- .++..-++. .++|+.+.+.| ||||.++..+.+
T Consensus 161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 972 233333321 25899999999 999999998864
No 245
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.84 E-value=8.6e-05 Score=64.40 Aligned_cols=106 Identities=13% Similarity=-0.012 Sum_probs=60.9
Q ss_pred CCCCCCeEEEECCCCchhHHHHHH-cCC-eEEEEcCChHHHHHHHHh-------hccCCC-CCceEEEEcCccccccc--
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLAR-MGA-TVTGIDAVEKNIKIARLH-------ADLDPE-TSTIEYCCTTAEKLVEE-- 224 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~-~~~-~v~giD~s~~~l~~a~~~-------~~~~~~-~~~v~~~~~d~~~l~~~-- 224 (346)
.+.++..++|||||.|......+- .++ .++|||+.+...+.+... ....+. ..++.+..+|+.+.+..
T Consensus 39 ~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~ 118 (205)
T PF08123_consen 39 NLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKD 118 (205)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHH
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhh
Confidence 456788999999999998776654 366 599999999877666542 222222 35788889988664421
Q ss_pred -CCceeEEEecchhcccCCHHHHHHHHHHhcccCceEEEE
Q 019123 225 -QRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVIS 263 (346)
Q Consensus 225 -~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~ 263 (346)
-...|+|+++..+- -++....|.++..-||+|-.++..
T Consensus 119 ~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 119 IWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp HGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEES
T ss_pred hhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEEC
Confidence 13479999987542 123345667777888988776643
No 246
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.78 E-value=3.2e-05 Score=66.17 Aligned_cols=75 Identities=29% Similarity=0.345 Sum_probs=63.8
Q ss_pred CCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc----ccCCceeEEEec
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV----EEQRKFDAVIAS 234 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~----~~~~~fDlv~~~ 234 (346)
....|+|..||.|..++.++..+..|+++|++|.-+..|++++...|++.+|.|+++|+.++. +....+|+|..+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 456899999999999999999999999999999999999999999999889999999997753 223345566553
No 247
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.75 E-value=1.4e-05 Score=61.72 Aligned_cols=98 Identities=11% Similarity=0.089 Sum_probs=43.6
Q ss_pred EEECCCCchhHHHHHHc----C-CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc--ccCCceeEEEecchh
Q 019123 165 VDVGCGGGILSEPLARM----G-ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV--EEQRKFDAVIASEVI 237 (346)
Q Consensus 165 LDiG~G~G~~~~~l~~~----~-~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~fDlv~~~~~l 237 (346)
||||+..|..+..+++. + .+++++|..+. .+..++.++..++..++.++.++..+.- .+..++|+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD- 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-
Confidence 68999999988888764 2 27999999985 2233333333344467999999986542 23578999987642
Q ss_pred cccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 238 EHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 238 ~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
|..+.....++.+...|+|||++++-+
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 222334567888999999999998754
No 248
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.71 E-value=0.0013 Score=62.22 Aligned_cols=161 Identities=8% Similarity=0.050 Sum_probs=84.7
Q ss_pred CCCeEEEECCCCchhHHHHHHc-----------------CCeEEEEcCChHHHHHHHHhhcc---------CC---CCCc
Q 019123 160 EGLNIVDVGCGGGILSEPLARM-----------------GATVTGIDAVEKNIKIARLHADL---------DP---ETST 210 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~-----------------~~~v~giD~s~~~l~~a~~~~~~---------~~---~~~~ 210 (346)
....|+|+|||+|..++.+... ...|..-|+-..=....-+.+.. .. ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 3679999999999887765332 23577777643111111111100 00 0001
Q ss_pred eEEEE---cCcccccccCCceeEEEecchhcccCCHH--------------------------------------HHHHH
Q 019123 211 IEYCC---TTAEKLVEEQRKFDAVIASEVIEHVADPA--------------------------------------EFCKS 249 (346)
Q Consensus 211 v~~~~---~d~~~l~~~~~~fDlv~~~~~l~~~~~~~--------------------------------------~~l~~ 249 (346)
.-|+. +.+..--+|+++.+++++++++|++...+ .+|+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 11222 22233236899999999999999886311 12333
Q ss_pred HHHhcccCceEEEEecCcch--------HHH-----HHHHHHHHHHhhhcCCCcc----ccccCCCHHHHHHHHHHCC-C
Q 019123 250 LSALTVSEGATVISTINRSM--------RAY-----ATAIIAAEHILHWLPKGTH----QWSSFLTPEELVLILQRAS-I 311 (346)
Q Consensus 250 ~~r~LkpgG~~~~~~~~~~~--------~~~-----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ll~~aG-F 311 (346)
=.+-|.|||.+++....+.. ... +...+........+..... --...++.+|++..+++.| |
T Consensus 223 Ra~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF 302 (386)
T PLN02668 223 RAQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSF 302 (386)
T ss_pred HHHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCE
Confidence 34458999999998765521 000 0000111011111111100 0134689999999999888 7
Q ss_pred cEEEEeccc
Q 019123 312 DVKEMAGFV 320 (346)
Q Consensus 312 ~~v~~~~~~ 320 (346)
.+.+++.+.
T Consensus 303 ~I~~le~~~ 311 (386)
T PLN02668 303 AIDKLEVFK 311 (386)
T ss_pred EeeeeEEee
Confidence 666655433
No 249
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.71 E-value=0.0003 Score=70.16 Aligned_cols=75 Identities=20% Similarity=0.134 Sum_probs=51.7
Q ss_pred CCCeEEEECCCCchhHHHHHHcC----------CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccc-----ccc
Q 019123 160 EGLNIVDVGCGGGILSEPLARMG----------ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKL-----VEE 224 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~----------~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l-----~~~ 224 (346)
...+|||.|||+|.+...++... ..++|+|+++.++..++.++...+. ..+.+...|.... ...
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc
Confidence 45699999999999998887641 3789999999999999887655431 1234444443221 111
Q ss_pred CCceeEEEecc
Q 019123 225 QRKFDAVIASE 235 (346)
Q Consensus 225 ~~~fDlv~~~~ 235 (346)
.+.||+|+.+-
T Consensus 110 ~~~fD~IIgNP 120 (524)
T TIGR02987 110 LDLFDIVITNP 120 (524)
T ss_pred cCcccEEEeCC
Confidence 25799999853
No 250
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.69 E-value=0.00036 Score=56.26 Aligned_cols=82 Identities=18% Similarity=0.135 Sum_probs=60.5
Q ss_pred eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc--cCCceeEEEecchhcccC--------CH---HHHHHHH
Q 019123 184 TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE--EQRKFDAVIASEVIEHVA--------DP---AEFCKSL 250 (346)
Q Consensus 184 ~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~--~~~~fDlv~~~~~l~~~~--------~~---~~~l~~~ 250 (346)
+|+|+||-+++++..++++...++..++.++...-+.+.. +.+.+|+++.+.+ ++| .+ ..+++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHHHH
Confidence 5899999999999999999998887789999998888763 3458999987653 333 23 2688999
Q ss_pred HHhcccCceEEEEecCc
Q 019123 251 SALTVSEGATVISTINR 267 (346)
Q Consensus 251 ~r~LkpgG~~~~~~~~~ 267 (346)
.+.|+|||++.+.....
T Consensus 79 l~lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPG 95 (140)
T ss_dssp HHHEEEEEEEEEEE--S
T ss_pred HHhhccCCEEEEEEeCC
Confidence 99999999999987643
No 251
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.67 E-value=0.00042 Score=63.16 Aligned_cols=189 Identities=15% Similarity=0.147 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHHHH--HcCCeEEEEcCChHHHHHHHHhhccC-CCCCce
Q 019123 135 PTRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLA--RMGATVTGIDAVEKNIKIARLHADLD-PETSTI 211 (346)
Q Consensus 135 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~--~~~~~v~giD~s~~~l~~a~~~~~~~-~~~~~v 211 (346)
+.|..|+. .+.+++.... .......++||||+|...+--.|. ..+.+++|+|+++..++.|++++..+ .+..+|
T Consensus 80 P~R~nYi~-~i~DlL~~~~--~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I 156 (299)
T PF05971_consen 80 PNRLNYIH-WIADLLASSN--PGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRI 156 (299)
T ss_dssp HHHHHHHH-HHHHHHT--T--CGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTE
T ss_pred chhHHHHH-HHHHHhhccc--cccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccce
Confidence 34666653 3344443221 111125689999999886533332 24889999999999999999999998 788889
Q ss_pred EEEEcCccc-c----cccCCceeEEEecchhcccCCHHHHHHHHHHh---c-cc-----CceEEEEecCcch------HH
Q 019123 212 EYCCTTAEK-L----VEEQRKFDAVIASEVIEHVADPAEFCKSLSAL---T-VS-----EGATVISTINRSM------RA 271 (346)
Q Consensus 212 ~~~~~d~~~-l----~~~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~---L-kp-----gG~~~~~~~~~~~------~~ 271 (346)
.++...-.. + ..+...||+.+|+--++.-. +++.....+- | ++ .....+..-..+. ..
T Consensus 157 ~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~s~--~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~GGEv~ 234 (299)
T PF05971_consen 157 ELRKQKNPDNIFDGIIQPNERFDFTMCNPPFYSSQ--EEAEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEGGEVA 234 (299)
T ss_dssp EEEE--ST-SSTTTSTT--S-EEEEEE-----SS----------------------------------TTTTHHHHTHHH
T ss_pred EEEEcCCccccchhhhcccceeeEEecCCccccCh--hhhcccccccccccccccccccCccccCCCCcceEEcCCccHH
Confidence 988664322 1 12456899999986664322 2222211111 2 11 1222332222111 12
Q ss_pred HHHHHHHHHHHhhh-cCCCccccccCCCHHHHHHHHHHCCCcEEEEeccccCCCCCcee
Q 019123 272 YATAIIAAEHILHW-LPKGTHQWSSFLTPEELVLILQRASIDVKEMAGFVYNPLTGRWS 329 (346)
Q Consensus 272 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~ 329 (346)
+...+......+.- +..-+....+.-+...+...|++.|-..+.+..+..+. +..|.
T Consensus 235 FV~rMI~ES~~~~~~v~WfTsmvgKkssL~~l~~~L~~~~~~~~~~~e~~QG~-t~rw~ 292 (299)
T PF05971_consen 235 FVKRMIKESLQLKDQVRWFTSMVGKKSSLKPLKKELKKLGATNYKVTEMCQGQ-TKRWI 292 (299)
T ss_dssp HHHHHHHHHHHHGGGEEEEEEEESSGGGHHHHHHHHHHTT-SEEEEEEEEETT-EEEEE
T ss_pred HHHHHHHHHHHhCCCcEEEeecccCcccHHHHHHHHHhcCCceEEEEEccCCc-eEEEE
Confidence 22222222111110 00000111234567899999999999888777766554 33453
No 252
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.64 E-value=0.00058 Score=59.14 Aligned_cols=124 Identities=11% Similarity=0.100 Sum_probs=75.6
Q ss_pred cccChhHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHHHHHc---CCeEEEEcCChHHHHHHHHhhccCCC
Q 019123 131 HALNPTRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARM---GATVTGIDAVEKNIKIARLHADLDPE 207 (346)
Q Consensus 131 ~~~n~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~~~ 207 (346)
...|+.|..+..- +.+-+. ..+..++.+||-+|..+|....++++- ...|++++.|+......-..+...
T Consensus 49 R~W~P~RSKLaAa-i~~Gl~----~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-- 121 (229)
T PF01269_consen 49 RVWNPFRSKLAAA-ILKGLE----NIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-- 121 (229)
T ss_dssp EEE-TTT-HHHHH-HHTT-S------S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--
T ss_pred eecCchhhHHHHH-HHcCcc----ccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--
Confidence 4445565554433 322222 146678999999999999998888875 348999999995544333322222
Q ss_pred CCceEEEEcCccccc-c--cCCceeEEEecchhcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 208 TSTIEYCCTTAEKLV-E--EQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 208 ~~~v~~~~~d~~~l~-~--~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
.|+--+..|+.... + --+.+|+|++.-. .-.+..-++.++...||+||.+++..
T Consensus 122 -~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 122 -PNIIPILEDARHPEKYRMLVEMVDVIFQDVA--QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp -TTEEEEES-TTSGGGGTTTS--EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -CceeeeeccCCChHHhhcccccccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 67888888986543 1 1347999987532 11223457788889999999999875
No 253
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.62 E-value=0.00014 Score=59.23 Aligned_cols=57 Identities=21% Similarity=0.254 Sum_probs=47.9
Q ss_pred eEEEECCCCchhHHHHHHcCC--eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccc
Q 019123 163 NIVDVGCGGGILSEPLARMGA--TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEK 220 (346)
Q Consensus 163 ~vLDiG~G~G~~~~~l~~~~~--~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 220 (346)
.|||||||.|.++..++..+. +|+++|+++.+.+.+++++..+++ .++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~-~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL-PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC-CcEEEEEeeeeC
Confidence 489999999999999988765 699999999999999999887766 457777766543
No 254
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.50 E-value=0.0039 Score=53.81 Aligned_cols=94 Identities=14% Similarity=0.115 Sum_probs=72.7
Q ss_pred CCCeEEEECCCCchhHHHHHHcCC--eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchh
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGA--TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVI 237 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~--~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l 237 (346)
.+.++.||||-.|.+..++...+. .++..|+++..++.|.+.+...++..++...++|....-.++..+|+|+...+=
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMG 95 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMG 95 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCc
Confidence 344599999999999999998754 799999999999999999999999889999999974433355579998876432
Q ss_pred cccCCHHHHHHHHHHhcc
Q 019123 238 EHVADPAEFCKSLSALTV 255 (346)
Q Consensus 238 ~~~~~~~~~l~~~~r~Lk 255 (346)
. .-+..+|.+-...|+
T Consensus 96 G--~lI~~ILee~~~~l~ 111 (226)
T COG2384 96 G--TLIREILEEGKEKLK 111 (226)
T ss_pred H--HHHHHHHHHhhhhhc
Confidence 1 123456666666555
No 255
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.46 E-value=0.00059 Score=57.87 Aligned_cols=107 Identities=19% Similarity=0.186 Sum_probs=69.2
Q ss_pred CCCeEEEECCCCchhHHHHHHcCC--eEEEEcCChHHHHHHHHhhccCC------CCCceEEEEcCcccccccCCceeEE
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGA--TVTGIDAVEKNIKIARLHADLDP------ETSTIEYCCTTAEKLVEEQRKFDAV 231 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~--~v~giD~s~~~l~~a~~~~~~~~------~~~~v~~~~~d~~~l~~~~~~fDlv 231 (346)
...-+.|||||-|.+...|+.... -+.|++|--..-++.+.++.... .-.|+.++..++...- ++-|.--
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~l--pn~f~kg 137 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFL--PNFFEKG 137 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhc--cchhhhc
Confidence 345789999999999999988754 58999998777777777665432 1256777777665432 1111111
Q ss_pred EecchhcccCCHH-------------HHHHHHHHhcccCceEEEEecCcc
Q 019123 232 IASEVIEHVADPA-------------EFCKSLSALTVSEGATVISTINRS 268 (346)
Q Consensus 232 ~~~~~l~~~~~~~-------------~~l~~~~r~LkpgG~~~~~~~~~~ 268 (346)
-..-.+..++|+. ..+.+..-+|++||.++..+-..+
T Consensus 138 qLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~e 187 (249)
T KOG3115|consen 138 QLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVKE 187 (249)
T ss_pred ccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHHH
Confidence 1112222334432 477888889999999998765443
No 256
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.0061 Score=51.85 Aligned_cols=123 Identities=15% Similarity=0.168 Sum_probs=82.1
Q ss_pred cccChhHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHHHHHc-C-CeEEEEcCChHHHHHHHHhhccCCCC
Q 019123 131 HALNPTRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARM-G-ATVTGIDAVEKNIKIARLHADLDPET 208 (346)
Q Consensus 131 ~~~n~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~v~giD~s~~~l~~a~~~~~~~~~~ 208 (346)
...|+.|..+..-.+.. +.. .+..++.+||-+|..+|....++++- + ..+++++.|+.+....-..+.+.
T Consensus 52 R~Wnp~RSKLaAaIl~G-l~~----~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--- 123 (231)
T COG1889 52 REWNPRRSKLAAAILKG-LKN----FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--- 123 (231)
T ss_pred eeeCcchhHHHHHHHcC-ccc----CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---
Confidence 45566665555443332 221 46778999999999999999988876 2 47999999997765554444332
Q ss_pred CceEEEEcCccccc---ccCCceeEEEecchhcccCC-HHHHHHHHHHhcccCceEEEEe
Q 019123 209 STIEYCCTTAEKLV---EEQRKFDAVIASEVIEHVAD-PAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 209 ~~v~~~~~d~~~l~---~~~~~fDlv~~~~~l~~~~~-~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
.|+--+..|+.... .--...|+|+.--. -++ .+-+..++...||+||.+++..
T Consensus 124 ~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 124 PNIIPILEDARKPEKYRHLVEKVDVIYQDVA---QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred CCceeeecccCCcHHhhhhcccccEEEEecC---CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 56777788886532 11245888876321 122 2336788899999999877764
No 257
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.40 E-value=0.0019 Score=54.13 Aligned_cols=100 Identities=15% Similarity=0.116 Sum_probs=63.8
Q ss_pred CCCCCeEEEECCCCchhHHHHHHc---CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEc-Ccccc--------cccC
Q 019123 158 PFEGLNIVDVGCGGGILSEPLARM---GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCT-TAEKL--------VEEQ 225 (346)
Q Consensus 158 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~-d~~~l--------~~~~ 225 (346)
..++.+|||+||..|.|+.-..++ ..-|.|+|+-. +.. + ..+.++++ |+.+. ..|+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p--~-~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEP--P-EGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccC--C-CCcccccccccCCHHHHHHHHHhCCC
Confidence 357899999999999999988776 34799999854 221 1 22445544 55432 1356
Q ss_pred CceeEEEecchhcc----cCCHH-------HHHHHHHHhcccCceEEEEecCcch
Q 019123 226 RKFDAVIASEVIEH----VADPA-------EFCKSLSALTVSEGATVISTINRSM 269 (346)
Q Consensus 226 ~~fDlv~~~~~l~~----~~~~~-------~~l~~~~r~LkpgG~~~~~~~~~~~ 269 (346)
...|+|++-+.-.. +.|-. .++.-+...++|+|.|+|-.+....
T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 78999987542211 11222 2344445567999999999876543
No 258
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.38 E-value=0.0021 Score=60.18 Aligned_cols=159 Identities=13% Similarity=0.084 Sum_probs=78.6
Q ss_pred CCCCeEEEECCCCchhHHHHHHc------------C------CeEEEEcCChHHH-------HHHHHhhccCCCCCce--
Q 019123 159 FEGLNIVDVGCGGGILSEPLARM------------G------ATVTGIDAVEKNI-------KIARLHADLDPETSTI-- 211 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~------------~------~~v~giD~s~~~l-------~~a~~~~~~~~~~~~v-- 211 (346)
....+|+|+||..|..++.+... + .+|+-.|+-..=- ....+..... .++
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~---~~~f~ 91 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKF---RNYFV 91 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHT---TSEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCC---ceEEE
Confidence 35579999999999988876542 2 3688888643111 1111111111 222
Q ss_pred EEEEcCcccccccCCceeEEEecchhcccCCH------------------------H---------------HHHHHHHH
Q 019123 212 EYCCTTAEKLVEEQRKFDAVIASEVIEHVADP------------------------A---------------EFCKSLSA 252 (346)
Q Consensus 212 ~~~~~d~~~l~~~~~~fDlv~~~~~l~~~~~~------------------------~---------------~~l~~~~r 252 (346)
.-+.+.+..--+|+++.|++++..++|++... + .+|+.=++
T Consensus 92 ~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ 171 (334)
T PF03492_consen 92 SGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAE 171 (334)
T ss_dssp EEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 22234444444689999999999999887421 1 12222234
Q ss_pred hcccCceEEEEecCcchH-----------HHHHHHHHHHHHhhhcCCCccc----cccCCCHHHHHHHHHHCC-CcEEEE
Q 019123 253 LTVSEGATVISTINRSMR-----------AYATAIIAAEHILHWLPKGTHQ----WSSFLTPEELVLILQRAS-IDVKEM 316 (346)
Q Consensus 253 ~LkpgG~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ll~~aG-F~~v~~ 316 (346)
=|+|||.+++..+.+... ..+...+......+.+.....+ -..+++.+|+...+++.| |++..+
T Consensus 172 ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~l 251 (334)
T PF03492_consen 172 ELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKL 251 (334)
T ss_dssp HEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEE
T ss_pred eeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEE
Confidence 489999999987754330 1111111221222222221111 134689999999998887 666555
Q ss_pred eccc
Q 019123 317 AGFV 320 (346)
Q Consensus 317 ~~~~ 320 (346)
+.+.
T Consensus 252 e~~~ 255 (334)
T PF03492_consen 252 ELFE 255 (334)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5443
No 259
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.36 E-value=0.0013 Score=56.57 Aligned_cols=117 Identities=12% Similarity=0.025 Sum_probs=65.2
Q ss_pred hHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHHHHHc------CCeEEEEcCChHHHHHHHHhhccCCCCC
Q 019123 136 TRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARM------GATVTGIDAVEKNIKIARLHADLDPETS 209 (346)
Q Consensus 136 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~------~~~v~giD~s~~~l~~a~~~~~~~~~~~ 209 (346)
.-+-.+.+.+|+. ++..|+|+|.-.|..+..++.. ..+|+|+|++...... +.....++.+
T Consensus 19 ~Dm~~~qeli~~~-----------kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~ 85 (206)
T PF04989_consen 19 QDMVAYQELIWEL-----------KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSP 85 (206)
T ss_dssp HHHHHHHHHHHHH-------------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----T
T ss_pred HHHHHHHHHHHHh-----------CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccC
Confidence 3355666777775 6789999999999888777653 3599999996432221 1233344557
Q ss_pred ceEEEEcCcccccc--------cCCceeEEEecchhcccCCHHHHHHHHHHhcccCceEEEEecC
Q 019123 210 TIEYCCTTAEKLVE--------EQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 210 ~v~~~~~d~~~l~~--------~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
+|+++++|..+... ......+|+ -.+-|...+..+.|+....++++|+++++.+..
T Consensus 86 rI~~i~Gds~d~~~~~~v~~~~~~~~~vlVi-lDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 86 RITFIQGDSIDPEIVDQVRELASPPHPVLVI-LDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp TEEEEES-SSSTHHHHTSGSS----SSEEEE-ESS----SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred ceEEEECCCCCHHHHHHHHHhhccCCceEEE-ECCCccHHHHHHHHHHhCccCCCCCEEEEEecc
Confidence 89999999865431 112233333 344444456778888899999999999987643
No 260
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.29 E-value=0.00076 Score=59.49 Aligned_cols=105 Identities=14% Similarity=0.074 Sum_probs=68.0
Q ss_pred CCCCeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecch
Q 019123 159 FEGLNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEV 236 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~ 236 (346)
.++.+|||||||.--++..+... +..|+|+||+..+++.........+ .+.++...|...-+ +....|+.++.=+
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~--~~~~~~v~Dl~~~~-~~~~~DlaLllK~ 180 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG--VPHDARVRDLLSDP-PKEPADLALLLKT 180 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSH-TTSEESEEEEET-
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC--CCcceeEeeeeccC-CCCCcchhhHHHH
Confidence 35789999999999999988766 4699999999999999988877666 45667777776553 4667999998877
Q ss_pred hcccCCHHH-HHHHHHHhcccCceEEEEecCc
Q 019123 237 IEHVADPAE-FCKSLSALTVSEGATVISTINR 267 (346)
Q Consensus 237 l~~~~~~~~-~l~~~~r~LkpgG~~~~~~~~~ 267 (346)
+..+..... ..-++...+. .-.++++.+.+
T Consensus 181 lp~le~q~~g~g~~ll~~~~-~~~~vVSfPtr 211 (251)
T PF07091_consen 181 LPCLERQRRGAGLELLDALR-SPHVVVSFPTR 211 (251)
T ss_dssp HHHHHHHSTTHHHHHHHHSC-ESEEEEEEES-
T ss_pred HHHHHHHhcchHHHHHHHhC-CCeEEEecccc
Confidence 766643321 1122222232 24566666654
No 261
>PRK10742 putative methyltransferase; Provisional
Probab=97.27 E-value=0.0013 Score=58.17 Aligned_cols=83 Identities=12% Similarity=0.049 Sum_probs=63.4
Q ss_pred CCCCCC--eEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccC------C--CCCceEEEEcCcccccc-cC
Q 019123 157 RPFEGL--NIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLD------P--ETSTIEYCCTTAEKLVE-EQ 225 (346)
Q Consensus 157 ~~~~~~--~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~------~--~~~~v~~~~~d~~~l~~-~~ 225 (346)
++.++. +|||+-+|.|..++.++..|++|+++|-++.+....+..+... + +..+++++.+|..++-. ..
T Consensus 83 glk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~ 162 (250)
T PRK10742 83 GIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT 162 (250)
T ss_pred CCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC
Confidence 334554 8999999999999999999999999999998887777666542 1 12568889999866532 23
Q ss_pred CceeEEEecchhcc
Q 019123 226 RKFDAVIASEVIEH 239 (346)
Q Consensus 226 ~~fDlv~~~~~l~~ 239 (346)
.+||+|++--.+.|
T Consensus 163 ~~fDVVYlDPMfp~ 176 (250)
T PRK10742 163 PRPQVVYLDPMFPH 176 (250)
T ss_pred CCCcEEEECCCCCC
Confidence 47999998766554
No 262
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.12 E-value=0.0025 Score=59.93 Aligned_cols=110 Identities=21% Similarity=0.172 Sum_probs=82.2
Q ss_pred CCCCCCCeEEEECCCCchhHHHHHHc---CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc---ccCCcee
Q 019123 156 ARPFEGLNIVDVGCGGGILSEPLARM---GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV---EEQRKFD 229 (346)
Q Consensus 156 ~~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~---~~~~~fD 229 (346)
..+.++.+|||+++..|.-+.+++.. -..|++.|.+..-+.....++...|+ .+......|..+++ ++. +||
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv-~ntiv~n~D~~ef~~~~~~~-~fD 314 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV-TNTIVSNYDGREFPEKEFPG-SFD 314 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC-CceEEEccCcccccccccCc-ccc
Confidence 34578899999999999777666654 33799999999999999998888887 66777888887765 334 899
Q ss_pred EEEe----cc--hhcc------c---------CC-HHHHHHHHHHhcccCceEEEEecCc
Q 019123 230 AVIA----SE--VIEH------V---------AD-PAEFCKSLSALTVSEGATVISTINR 267 (346)
Q Consensus 230 lv~~----~~--~l~~------~---------~~-~~~~l~~~~r~LkpgG~~~~~~~~~ 267 (346)
-|+. +. ++.- . .. ..++|-.+...+++||+|+-.+.+.
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 9985 33 2211 0 11 1257788889999999999987654
No 263
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.09 E-value=0.0018 Score=62.32 Aligned_cols=96 Identities=15% Similarity=0.144 Sum_probs=67.1
Q ss_pred CCeEEEECCCCchhHHHHHHcCCeEEEEcCC----hHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecch
Q 019123 161 GLNIVDVGCGGGILSEPLARMGATVTGIDAV----EKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEV 236 (346)
Q Consensus 161 ~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s----~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~ 236 (346)
-..|+|+..|.|.++..|.+.. |+++... +..+...-.+ |+ +-.++.=+|.++.-+.+||+|++..+
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~~--VWVMNVVP~~~~ntL~vIydR----GL---IG~yhDWCE~fsTYPRTYDLlHA~~l 436 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDDP--VWVMNVVPVSGPNTLPVIYDR----GL---IGVYHDWCEAFSTYPRTYDLLHADGL 436 (506)
T ss_pred eeeeeeecccccHHHHHhccCC--ceEEEecccCCCCcchhhhhc----cc---chhccchhhccCCCCcchhheehhhh
Confidence 3589999999999999998775 3333332 3333333222 11 22333223556655789999999988
Q ss_pred hcccC---CHHHHHHHHHHhcccCceEEEEec
Q 019123 237 IEHVA---DPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 237 l~~~~---~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
+.... +...++-++-|+|+|||.++|-+.
T Consensus 437 fs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 437 FSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred hhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 87654 467899999999999999999764
No 264
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=97.08 E-value=0.0022 Score=61.78 Aligned_cols=131 Identities=11% Similarity=0.186 Sum_probs=93.2
Q ss_pred ChhHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHHHHHc------CCeEEEEcCChHHHHHHHHhhccCCC
Q 019123 134 NPTRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARM------GATVTGIDAVEKNIKIARLHADLDPE 207 (346)
Q Consensus 134 n~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~------~~~v~giD~s~~~l~~a~~~~~~~~~ 207 (346)
++...+...+.+.+.+.+.+..........|+-+|+|-|-+....++. ..++++++-+|.++-..+.+ .-...
T Consensus 341 D~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~W 419 (649)
T KOG0822|consen 341 DPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFECW 419 (649)
T ss_pred cchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhhh
Confidence 334455666666666655543333334568999999999876665443 44899999999988776663 33334
Q ss_pred CCceEEEEcCcccccccCCceeEEEecchhcccCC---HHHHHHHHHHhcccCceEEEEecC
Q 019123 208 TSTIEYCCTTAEKLVEEQRKFDAVIASEVIEHVAD---PAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 208 ~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~~~~---~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
..+|+++..|+..+..|..+.|++++ ..|..|.| -+++|.-+.+.|||+|+.+-....
T Consensus 420 ~~~Vtii~~DMR~w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkpdgIsIP~sYt 480 (649)
T KOG0822|consen 420 DNRVTIISSDMRKWNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKPDGISIPSSYT 480 (649)
T ss_pred cCeeEEEeccccccCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcCCCceEccchhh
Confidence 57899999999999865678998764 45555544 358999999999999988765543
No 265
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.02 E-value=0.072 Score=48.11 Aligned_cols=171 Identities=9% Similarity=-0.030 Sum_probs=101.6
Q ss_pred hHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHHHHHc-CCeEEEEcCChHHHHHHHHhhccCC--CCCceE
Q 019123 136 TRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARM-GATVTGIDAVEKNIKIARLHADLDP--ETSTIE 212 (346)
Q Consensus 136 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~~~~--~~~~v~ 212 (346)
.|..++-+.+.+.+. .....|+.+|||-=.-+..+... +..++=+|. |++++.-++.+...+ ...+..
T Consensus 65 ~Rtr~~D~~i~~~~~--------~g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~ 135 (260)
T TIGR00027 65 VRTRFFDDFLLAAVA--------AGIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRR 135 (260)
T ss_pred HHHHHHHHHHHHHHh--------cCCcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceE
Confidence 445555555554432 12347999999998888777433 334444444 566666666665432 236788
Q ss_pred EEEcCccccc--------ccCCceeEEEecchhcccCC--HHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHH
Q 019123 213 YCCTTAEKLV--------EEQRKFDAVIASEVIEHVAD--PAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHI 282 (346)
Q Consensus 213 ~~~~d~~~l~--------~~~~~fDlv~~~~~l~~~~~--~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~ 282 (346)
++.+|+..-. +..+.--++++-.++.+++. ...+|+.+.+...||+.+++...++......... .....
T Consensus 136 ~v~~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~-~~~~~ 214 (260)
T TIGR00027 136 AVPVDLRQDWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGM-RAPVY 214 (260)
T ss_pred EeccCchhhHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHH-HHHHH
Confidence 8999986211 11223447777778888875 3468899988888999888876655211111000 01111
Q ss_pred hhhcCCCccccccCCCHHHHHHHHHHCCCcEEEE
Q 019123 283 LHWLPKGTHQWSSFLTPEELVLILQRASIDVKEM 316 (346)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (346)
..........+...+.+.++..+|...||++...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 215 HAARGVDGSGLVFGIDRADVAEWLAERGWRASEH 248 (260)
T ss_pred HhhhcccccccccCCChhhHHHHHHHCCCeeecC
Confidence 1111012233445678899999999999998754
No 266
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.95 E-value=0.013 Score=51.99 Aligned_cols=107 Identities=19% Similarity=0.223 Sum_probs=72.9
Q ss_pred CCCeEEEECCCCchhHHHHHHc-CCeEEEEcCChHHHH--HHHH--hhccCCCCCceEEEEcCccccc---c-cCCceeE
Q 019123 160 EGLNIVDVGCGGGILSEPLARM-GATVTGIDAVEKNIK--IARL--HADLDPETSTIEYCCTTAEKLV---E-EQRKFDA 230 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~-~~~v~giD~s~~~l~--~a~~--~~~~~~~~~~v~~~~~d~~~l~---~-~~~~fDl 230 (346)
...+||++|+|+|..+..++-+ +.+|...|+...+.. ..++ ....+.+...+.+...+....+ . ++..+|+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 4568999999999777777664 679999998643322 2211 1122222345666666654432 1 2222999
Q ss_pred EEecchhcccCCHHHHHHHHHHhcccCceEEEEecC
Q 019123 231 VIASEVIEHVADPAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 231 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
|+.+.++.+-..++.++..++..|..+|.+++...-
T Consensus 166 ilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~l 201 (248)
T KOG2793|consen 166 ILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPL 201 (248)
T ss_pred EEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEec
Confidence 999999999888999999999999999966665543
No 267
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=96.92 E-value=0.0022 Score=52.44 Aligned_cols=129 Identities=14% Similarity=0.081 Sum_probs=82.6
Q ss_pred CCeEEEECCCCchhHHHHHHcCC-eEEEEcCChHHHH-HHHHhhccCCCCCceEEEEcCccccc-ccCCceeEEEecchh
Q 019123 161 GLNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIK-IARLHADLDPETSTIEYCCTTAEKLV-EEQRKFDAVIASEVI 237 (346)
Q Consensus 161 ~~~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~l~-~a~~~~~~~~~~~~v~~~~~d~~~l~-~~~~~fDlv~~~~~l 237 (346)
+++++-+|+..-..-...+.+|+ +|..+|.++--++ ..+.++ -.+...|...-. .-.++||.+.|..++
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~--------ssi~p~df~~~~~~y~~~fD~~as~~si 73 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL--------SSILPVDFAKNWQKYAGSFDFAASFSSI 73 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc--------ccccHHHHHHHHHHhhccchhhheechh
Confidence 46788888887776666667776 6888888752111 111111 112222222111 235689999999999
Q ss_pred cccC-----C---H---HHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHH
Q 019123 238 EHVA-----D---P---AEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLIL 306 (346)
Q Consensus 238 ~~~~-----~---~---~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 306 (346)
+|+. | + ...+.++.++|||||.|++..+...+. -.+...+.|.+..+.-|+
T Consensus 74 Eh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~------------------i~fNahRiYg~~rL~mm~ 135 (177)
T PF03269_consen 74 EHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDA------------------IQFNAHRIYGPIRLAMMF 135 (177)
T ss_pred ccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcc------------------eEEecceeecHhHHHHHh
Confidence 8873 2 2 367888999999999999998754321 011124677778887776
Q ss_pred HHCCCcEEEEe
Q 019123 307 QRASIDVKEMA 317 (346)
Q Consensus 307 ~~aGF~~v~~~ 317 (346)
+||+.+...
T Consensus 136 --~gfe~i~tf 144 (177)
T PF03269_consen 136 --YGFEWIDTF 144 (177)
T ss_pred --CCcEEEeee
Confidence 899998753
No 268
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.88 E-value=0.0053 Score=56.37 Aligned_cols=79 Identities=15% Similarity=0.090 Sum_probs=63.8
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc-----cCCcee
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE-----EQRKFD 229 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~-----~~~~fD 229 (346)
.+.++..++|.-+|.|..+..+++. ..+|+|+|.++.++..+++++... ..++.+++++..++.. ..+++|
T Consensus 17 ~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~~~~~vD 94 (305)
T TIGR00006 17 NIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDELLVTKID 94 (305)
T ss_pred CcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhcCCCccc
Confidence 3456789999999999999999886 369999999999999999987653 3689999999887641 235799
Q ss_pred EEEecchh
Q 019123 230 AVIASEVI 237 (346)
Q Consensus 230 lv~~~~~l 237 (346)
.|+...++
T Consensus 95 gIl~DLGv 102 (305)
T TIGR00006 95 GILVDLGV 102 (305)
T ss_pred EEEEeccC
Confidence 99985544
No 269
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.87 E-value=0.037 Score=48.73 Aligned_cols=133 Identities=16% Similarity=0.074 Sum_probs=72.2
Q ss_pred CCCCCCeEEEECCCCc-hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccc-cc-cCCceeEEEe
Q 019123 157 RPFEGLNIVDVGCGGG-ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKL-VE-EQRKFDAVIA 233 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G-~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l-~~-~~~~fDlv~~ 233 (346)
....+++||-||=.-- .++..+.....+|+++|+++..++..++.+...++ +++.+..|+.+- |. -.++||++++
T Consensus 41 gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl--~i~~~~~DlR~~LP~~~~~~fD~f~T 118 (243)
T PF01861_consen 41 GDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL--PIEAVHYDLRDPLPEELRGKFDVFFT 118 (243)
T ss_dssp T-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BSEEEE
T ss_pred CcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC--ceEEEEecccccCCHHHhcCCCEEEe
Confidence 4457899999985543 24444444566999999999999999998888876 399999998663 32 2579999987
Q ss_pred cchhcccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcE
Q 019123 234 SEVIEHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDV 313 (346)
Q Consensus 234 ~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~ 313 (346)
.-. +...-...++......||..|......+.....+. .. -.++++.+.+.||.+
T Consensus 119 DPP-yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~----------~~--------------~~~~Q~~l~~~gl~i 173 (243)
T PF01861_consen 119 DPP-YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASP----------DK--------------WLEVQRFLLEMGLVI 173 (243)
T ss_dssp ----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--H----------HH--------------HHHHHHHHHTS--EE
T ss_pred CCC-CCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcH----------HH--------------HHHHHHHHHHCCcCH
Confidence 310 01112236888899999876633333332211100 00 136777888999988
Q ss_pred EEE
Q 019123 314 KEM 316 (346)
Q Consensus 314 v~~ 316 (346)
..+
T Consensus 174 ~di 176 (243)
T PF01861_consen 174 TDI 176 (243)
T ss_dssp EEE
T ss_pred HHH
Confidence 764
No 270
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.0025 Score=58.53 Aligned_cols=110 Identities=16% Similarity=0.120 Sum_probs=66.9
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHc---CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCc----ccccccCCcee
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARM---GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTA----EKLVEEQRKFD 229 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~----~~l~~~~~~fD 229 (346)
+...+++|||+|.|.|.-+..+-.- -..++.++.|+..-+........... ....+-..|+ ..++ ....|+
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-~~td~r~s~vt~dRl~lp-~ad~yt 187 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-EKTDWRASDVTEDRLSLP-AADLYT 187 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-ccCCCCCCccchhccCCC-ccceee
Confidence 4456778999999999877665443 12678888888666655544332211 1111222222 2222 234566
Q ss_pred EEEecchhcccCC---HHHHHHHHHHhcccCceEEEEecCcc
Q 019123 230 AVIASEVIEHVAD---PAEFCKSLSALTVSEGATVISTINRS 268 (346)
Q Consensus 230 lv~~~~~l~~~~~---~~~~l~~~~r~LkpgG~~~~~~~~~~ 268 (346)
+|++..-|-+..+ +...++.+..++.|||.|++.+..-.
T Consensus 188 l~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 188 LAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred hhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 6665554444433 34588999999999999999997643
No 271
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.76 E-value=0.0057 Score=46.60 Aligned_cols=34 Identities=38% Similarity=0.497 Sum_probs=30.0
Q ss_pred CCCCeEEEECCCCchhHHHHHHcCCeEEEEcCCh
Q 019123 159 FEGLNIVDVGCGGGILSEPLARMGATVTGIDAVE 192 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~ 192 (346)
.+.....|||||+|.+..-|...|+.=.|+|.-.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~ 90 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSEGYPGWGIDARR 90 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhCCCCcccccccc
Confidence 4567899999999999999999999999999743
No 272
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.75 E-value=0.0031 Score=59.46 Aligned_cols=72 Identities=21% Similarity=0.321 Sum_probs=58.7
Q ss_pred CeEEEECCCCchhHHHHHHcCC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc-cCCceeEEEe
Q 019123 162 LNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE-EQRKFDAVIA 233 (346)
Q Consensus 162 ~~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~fDlv~~ 233 (346)
..|||||.|||.+++..+..|+ .|++++.-..|.+.|++...++|.+++|+++.---.++.. +....|+++.
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhH
Confidence 4699999999999999998887 7999999999999999999999999999888665544432 2334566554
No 273
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.70 E-value=0.0086 Score=56.91 Aligned_cols=101 Identities=20% Similarity=0.291 Sum_probs=77.4
Q ss_pred CCCeEEEECCCCchhHHHHHHc--C-CeEEEEcCChHHHHHHHHhhccCCCCC-ceEEEEcCcccccc-cCCceeEEEec
Q 019123 160 EGLNIVDVGCGGGILSEPLARM--G-ATVTGIDAVEKNIKIARLHADLDPETS-TIEYCCTTAEKLVE-EQRKFDAVIAS 234 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~--~-~~v~giD~s~~~l~~a~~~~~~~~~~~-~v~~~~~d~~~l~~-~~~~fDlv~~~ 234 (346)
.+.+|||.=+|+|.=+++.+.. + .+|+..|+|+++++..++++.-+++.. .+++...|+..+-. ....||+|=.
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl- 127 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL- 127 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe-
Confidence 3469999999999888888776 2 389999999999999999999888866 68999999877642 4678999964
Q ss_pred chhcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 235 EVIEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 235 ~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
.-+..+-.+|..+.+.+|.||++.++.
T Consensus 128 ---DPfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 128 ---DPFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp -----SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred ---CCCCCccHhHHHHHHHhhcCCEEEEec
Confidence 345567899999999999999999975
No 274
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.61 E-value=0.0013 Score=59.02 Aligned_cols=101 Identities=17% Similarity=0.083 Sum_probs=76.3
Q ss_pred CCCeEEEECCCCchhHH-HHHHcCC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchh
Q 019123 160 EGLNIVDVGCGGGILSE-PLARMGA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVI 237 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~-~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l 237 (346)
.+..|.|+-.|.|++++ .+...|+ .|+++|.+|..++..+..+..+....++..+.+|..... ++...|-|...
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~-~~~~AdrVnLG--- 269 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK-PRLRADRVNLG--- 269 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC-ccccchheeec---
Confidence 34789999999999999 6777777 899999999999999999988876666677777765543 46778887754
Q ss_pred cccCCHHHHHHHHHHhccc-Cc-eEEEEec
Q 019123 238 EHVADPAEFCKSLSALTVS-EG-ATVISTI 265 (346)
Q Consensus 238 ~~~~~~~~~l~~~~r~Lkp-gG-~~~~~~~ 265 (346)
-+++-++-.-.+.++||| || ++-|-+.
T Consensus 270 -LlPSse~~W~~A~k~Lk~eggsilHIHen 298 (351)
T KOG1227|consen 270 -LLPSSEQGWPTAIKALKPEGGSILHIHEN 298 (351)
T ss_pred -cccccccchHHHHHHhhhcCCcEEEEecc
Confidence 345656666667778887 44 5555543
No 275
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.57 E-value=0.024 Score=52.77 Aligned_cols=97 Identities=21% Similarity=0.225 Sum_probs=68.9
Q ss_pred CCCCCCCeEEEECCC-CchhHHHHHH-cCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcC-cccccccCCceeEEE
Q 019123 156 ARPFEGLNIVDVGCG-GGILSEPLAR-MGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTT-AEKLVEEQRKFDAVI 232 (346)
Q Consensus 156 ~~~~~~~~vLDiG~G-~G~~~~~l~~-~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d-~~~l~~~~~~fDlv~ 232 (346)
....++.+|+=+|+| .|..+..++. .|++|+++|.+++-++.+++.-.. .++... ......-.+.||+|+
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd-------~~i~~~~~~~~~~~~~~~d~ii 234 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD-------HVINSSDSDALEAVKEIADAII 234 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc-------EEEEcCCchhhHHhHhhCcEEE
Confidence 356688999988887 4468888887 599999999999999999886432 233322 222211122499998
Q ss_pred ecchhcccCCHHHHHHHHHHhcccCceEEEEecC
Q 019123 233 ASEVIEHVADPAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 233 ~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
..- . ...+....+.|++||.+++.-..
T Consensus 235 ~tv------~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 235 DTV------G-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ECC------C-hhhHHHHHHHHhcCCEEEEECCC
Confidence 653 2 56778888999999999997654
No 276
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.35 E-value=0.0095 Score=52.43 Aligned_cols=78 Identities=23% Similarity=0.299 Sum_probs=47.4
Q ss_pred CeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHH---HhhccCCC-----CCceEEEEcCcccc-cccCCceeEEE
Q 019123 162 LNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIAR---LHADLDPE-----TSTIEYCCTTAEKL-VEEQRKFDAVI 232 (346)
Q Consensus 162 ~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~---~~~~~~~~-----~~~v~~~~~d~~~l-~~~~~~fDlv~ 232 (346)
.+|||.-+|-|.-++-++..|++|+++|-||.+....+ +++..... ..+++++.+|..++ ..++++||+|+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY 156 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVY 156 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEE
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEE
Confidence 48999999999999999988999999999986554333 33333222 14789999998764 34678999999
Q ss_pred ecchhcc
Q 019123 233 ASEVIEH 239 (346)
Q Consensus 233 ~~~~l~~ 239 (346)
+--++.+
T Consensus 157 ~DPMFp~ 163 (234)
T PF04445_consen 157 FDPMFPE 163 (234)
T ss_dssp E--S---
T ss_pred ECCCCCC
Confidence 9766644
No 277
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=96.21 E-value=0.048 Score=46.07 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHHHHHc----C--CeEEEEcCChHHHHHHHHhhccCCCC
Q 019123 135 PTRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARM----G--ATVTGIDAVEKNIKIARLHADLDPET 208 (346)
Q Consensus 135 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~----~--~~v~giD~s~~~l~~a~~~~~~~~~~ 208 (346)
+.-+-..++.+|+. .+..|+|+|.-.|..+..+++. | .+|.++|++-..+..+....
T Consensus 55 p~D~~~yQellw~~-----------~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~------ 117 (237)
T COG3510 55 PSDMWNYQELLWEL-----------QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREV------ 117 (237)
T ss_pred HHHHHHHHHHHHhc-----------CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcC------
Confidence 33345566777764 6779999999999888877764 5 69999999866554433322
Q ss_pred CceEEEEcCcccccc-------cCCceeEEEecchhcccCCHHHHHHHHHHhcccCceEEEEecCc
Q 019123 209 STIEYCCTTAEKLVE-------EQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTINR 267 (346)
Q Consensus 209 ~~v~~~~~d~~~l~~-------~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~ 267 (346)
+.|.|+.++-.+... ..+.--+.+|...-|+.....+.|+-+...|..|-++++.+-+-
T Consensus 118 p~i~f~egss~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v 183 (237)
T COG3510 118 PDILFIEGSSTDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNV 183 (237)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccc
Confidence 679999998765431 12223455566677777777788888899999999988876543
No 278
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.21 E-value=0.018 Score=51.85 Aligned_cols=108 Identities=9% Similarity=0.039 Sum_probs=77.5
Q ss_pred CCCCCeEEEECCCCchhHHHHHHcCC--eEEEEcCChHHHHHHHHhhccC--CC-CCceEEEEcCccccc--ccCCceeE
Q 019123 158 PFEGLNIVDVGCGGGILSEPLARMGA--TVTGIDAVEKNIKIARLHADLD--PE-TSTIEYCCTTAEKLV--EEQRKFDA 230 (346)
Q Consensus 158 ~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~giD~s~~~l~~a~~~~~~~--~~-~~~v~~~~~d~~~l~--~~~~~fDl 230 (346)
...+++||-||.|.|........|.. ++..+|+....++..++-.... +. .+++..+.+|...+- ...+.||+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 34678999999999999988887733 7999999988888777654332 22 468999999875543 24789999
Q ss_pred EEecchhcccCC----HHHHHHHHHHhcccCceEEEEec
Q 019123 231 VIASEVIEHVAD----PAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 231 v~~~~~l~~~~~----~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
|+.--.=--.+- ...++..+.+.||+||++++..-
T Consensus 199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 199 IITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred EEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 986321000000 13577888999999999998763
No 279
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.21 E-value=0.054 Score=50.42 Aligned_cols=111 Identities=18% Similarity=0.118 Sum_probs=76.3
Q ss_pred CCCCCCCeEEEECCCCchhHHHHHHcCC------eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-------
Q 019123 156 ARPFEGLNIVDVGCGGGILSEPLARMGA------TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV------- 222 (346)
Q Consensus 156 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~------~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~------- 222 (346)
+...++.+|||++...|.-+..+++..+ .|++-|+++.-+....+.....+ ..++.+...|+...+
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-CcceeeecccceeccccccccC
Confidence 4667899999999999999988888644 79999999877776666553332 244555555554333
Q ss_pred --ccCCceeEEEecc------hhcccCC----------------H-HHHHHHHHHhcccCceEEEEecCc
Q 019123 223 --EEQRKFDAVIASE------VIEHVAD----------------P-AEFCKSLSALTVSEGATVISTINR 267 (346)
Q Consensus 223 --~~~~~fDlv~~~~------~l~~~~~----------------~-~~~l~~~~r~LkpgG~~~~~~~~~ 267 (346)
.....||-|+|-- ++.+-.+ . ..+|....+.||+||.++-++.+-
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 1234688888721 2222211 1 157888899999999999988754
No 280
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.16 E-value=0.0085 Score=51.92 Aligned_cols=95 Identities=14% Similarity=0.104 Sum_probs=67.4
Q ss_pred CeEEEECCCCchhHHHHHHc--------CC---eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc--------
Q 019123 162 LNIVDVGCGGGILSEPLARM--------GA---TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-------- 222 (346)
Q Consensus 162 ~~vLDiG~G~G~~~~~l~~~--------~~---~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-------- 222 (346)
.+++|++...|.|+..|.++ +. .++++|+.+ +... ..|.-+++|+....
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~---------MaPI---~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP---------MAPI---EGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc---------CCcc---CceEEeecccCCHhHHHHHHHH
Confidence 58999999999999988775 12 299999865 3222 34667788886542
Q ss_pred ccCCceeEEEecc-----hhcccCCH------HHHHHHHHHhcccCceEEEEecCcc
Q 019123 223 EEQRKFDAVIASE-----VIEHVADP------AEFCKSLSALTVSEGATVISTINRS 268 (346)
Q Consensus 223 ~~~~~fDlv~~~~-----~l~~~~~~------~~~l~~~~r~LkpgG~~~~~~~~~~ 268 (346)
+.....|+|+|-. ++|.+... ..+|.-...+|||||.|+--.+...
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~ 167 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGR 167 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccC
Confidence 3355899999965 45544332 2467777889999999987766443
No 281
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.16 E-value=0.052 Score=53.60 Aligned_cols=102 Identities=17% Similarity=0.171 Sum_probs=69.1
Q ss_pred CCCCCCCeEEEECCCC-chhHHHHHHc-CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccc-----------cc
Q 019123 156 ARPFEGLNIVDVGCGG-GILSEPLARM-GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEK-----------LV 222 (346)
Q Consensus 156 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-----------l~ 222 (346)
+...++.+||=+|||. |..+...+.. |++|+++|.+++.++.++..- .+++..|..+ +.
T Consensus 160 aG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslG--------A~~v~i~~~e~~~~~~gya~~~s 231 (509)
T PRK09424 160 AGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMG--------AEFLELDFEEEGGSGDGYAKVMS 231 (509)
T ss_pred cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC--------CeEEEeccccccccccchhhhcc
Confidence 3456789999999996 5555555554 889999999999999888732 2222111111 00
Q ss_pred ----------cc--CCceeEEEecchhcccCCHHHHHHHHHHhcccCceEEEEec
Q 019123 223 ----------EE--QRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 223 ----------~~--~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
+. -..+|+|+.......-+.+..+.+++.+.+||||.++....
T Consensus 232 ~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 232 EEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred hhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 01 14689999876654434454456999999999999887654
No 282
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.12 E-value=0.023 Score=52.24 Aligned_cols=110 Identities=19% Similarity=0.143 Sum_probs=79.4
Q ss_pred CCCCCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHH-------HHhhccCCCC-CceEEEEcCcccccc-cCC
Q 019123 156 ARPFEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIA-------RLHADLDPET-STIEYCCTTAEKLVE-EQR 226 (346)
Q Consensus 156 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a-------~~~~~~~~~~-~~v~~~~~d~~~l~~-~~~ 226 (346)
+...++..|.|--.|||.+....+.-|+-|+|.||+-.|+... +.++++.+.. --+.++.+|..+.+. ..-
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~ 283 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNL 283 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcc
Confidence 3456899999999999999999999999999999998887732 3344444432 236677888877664 355
Q ss_pred ceeEEEecc--hh----------------------cccCC---------HHHHHHHHHHhcccCceEEEEec
Q 019123 227 KFDAVIASE--VI----------------------EHVAD---------PAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 227 ~fDlv~~~~--~l----------------------~~~~~---------~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
.||.|+|-- ++ .|.+. ....|.-.+++|..||.+++.-+
T Consensus 284 ~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 284 KFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred eeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 799999931 11 12222 12467777889999999988765
No 283
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.08 E-value=0.034 Score=48.40 Aligned_cols=116 Identities=15% Similarity=0.279 Sum_probs=72.1
Q ss_pred hhhCcCCCCCcccccChhHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhH--HHHHHcCCeEEEEcCChHHHH
Q 019123 119 TWWDAEGPYKPLHALNPTRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILS--EPLARMGATVTGIDAVEKNIK 196 (346)
Q Consensus 119 ~y~~~~~~~~~~~~~n~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~--~~l~~~~~~v~giD~s~~~l~ 196 (346)
.|||-...+ +=.+-+-|.+|+++. .+++..... ..+.++.++||||.|.-.+- +...+.|.+.+|.|+++..++
T Consensus 41 ~~wdiPeg~--LCPpvPgRAdYih~l-aDLL~s~~g-~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~ 116 (292)
T COG3129 41 RYWDIPEGF--LCPPVPGRADYIHHL-ADLLASTSG-QIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLS 116 (292)
T ss_pred eEecCCCCC--cCCCCCChhHHHHHH-HHHHHhcCC-CCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHH
Confidence 567654322 223455677877654 333322111 11235678999998876443 233345889999999999999
Q ss_pred HHHHhhccC-CCCCceEEEEcCcccc-----cccCCceeEEEecchhc
Q 019123 197 IARLHADLD-PETSTIEYCCTTAEKL-----VEEQRKFDAVIASEVIE 238 (346)
Q Consensus 197 ~a~~~~~~~-~~~~~v~~~~~d~~~l-----~~~~~~fDlv~~~~~l~ 238 (346)
.|+..+..+ ++...++.....-..- .-..+.||+++|+--+|
T Consensus 117 sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh 164 (292)
T COG3129 117 SAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFH 164 (292)
T ss_pred HHHHHHHcCcchhhheeEEeccCccccccccccccceeeeEecCCCcc
Confidence 999998877 4545566654432221 11357899999987665
No 284
>PHA01634 hypothetical protein
Probab=96.06 E-value=0.033 Score=43.85 Aligned_cols=46 Identities=22% Similarity=-0.028 Sum_probs=41.5
Q ss_pred CCCeEEEECCCCchhHHHHHHcCC-eEEEEcCChHHHHHHHHhhccC
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIKIARLHADLD 205 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~ 205 (346)
.+.+|+|||.+.|+.+++++-.|+ .|++++.++...+..+++++.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 678999999999999999999988 7999999999999988876554
No 285
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=95.98 E-value=0.007 Score=56.98 Aligned_cols=75 Identities=27% Similarity=0.298 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCc-eEEEE
Q 019123 137 RLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETST-IEYCC 215 (346)
Q Consensus 137 r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~-v~~~~ 215 (346)
|++..++++...+ .++..|.|+-||.|-++..++..++.|++.|+++++++..+.++..+.+.+. ++.+.
T Consensus 235 RL~~Eherlsg~f---------k~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~N 305 (495)
T KOG2078|consen 235 RLSHEHERLSGLF---------KPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFN 305 (495)
T ss_pred cchhHHHHHhhcc---------CCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeeec
Confidence 3555555555433 4788999999999999999999999999999999999999999988777554 88888
Q ss_pred cCccc
Q 019123 216 TTAEK 220 (346)
Q Consensus 216 ~d~~~ 220 (346)
.|+..
T Consensus 306 mda~~ 310 (495)
T KOG2078|consen 306 MDAKD 310 (495)
T ss_pred ccHHH
Confidence 88744
No 286
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.013 Score=47.36 Aligned_cols=99 Identities=18% Similarity=0.174 Sum_probs=69.0
Q ss_pred CCCCeEEEECCCCchhHHHHHHcC-CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchh
Q 019123 159 FEGLNIVDVGCGGGILSEPLARMG-ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVI 237 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~~-~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l 237 (346)
.+..+.+|+|+|.|.+....++.| ..-+|+++|+=.+.+++-+.-..++.....|..-|+-+....+ |..|++..+-
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d--y~~vviFgae 148 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD--YRNVVIFGAE 148 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc--cceEEEeehH
Confidence 455799999999999999999988 4899999999999988888777777788889888887766544 3444443333
Q ss_pred cccCCHHHHHHHHHHhcccCceEEE
Q 019123 238 EHVADPAEFCKSLSALTVSEGATVI 262 (346)
Q Consensus 238 ~~~~~~~~~l~~~~r~LkpgG~~~~ 262 (346)
.-++|.+. .+..-|..+-.++-
T Consensus 149 s~m~dLe~---KL~~E~p~nt~vva 170 (199)
T KOG4058|consen 149 SVMPDLED---KLRTELPANTRVVA 170 (199)
T ss_pred HHHhhhHH---HHHhhCcCCCeEEE
Confidence 33344333 33333444544443
No 287
>PRK13699 putative methylase; Provisional
Probab=95.84 E-value=0.027 Score=49.79 Aligned_cols=52 Identities=6% Similarity=0.153 Sum_probs=35.8
Q ss_pred EEEEcCcccc--cccCCceeEEEecc--hh--cc-----c--C---C-HHHHHHHHHHhcccCceEEEE
Q 019123 212 EYCCTTAEKL--VEEQRKFDAVIASE--VI--EH-----V--A---D-PAEFCKSLSALTVSEGATVIS 263 (346)
Q Consensus 212 ~~~~~d~~~l--~~~~~~fDlv~~~~--~l--~~-----~--~---~-~~~~l~~~~r~LkpgG~~~~~ 263 (346)
+++++|+.++ .++++++|+|+..- .+ .+ + . + ...++.+++|+|||||.+++.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 5677888664 35788999999862 11 11 0 0 1 246889999999999988764
No 288
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=95.72 E-value=0.0062 Score=54.65 Aligned_cols=105 Identities=15% Similarity=0.206 Sum_probs=64.8
Q ss_pred CCCCeEEEECCCCchhHHHHHHcC-CeEEEEcCChHHHHHH-HHhhccCCC-----CCceEEEEcCcc---cccc-cCC-
Q 019123 159 FEGLNIVDVGCGGGILSEPLARMG-ATVTGIDAVEKNIKIA-RLHADLDPE-----TSTIEYCCTTAE---KLVE-EQR- 226 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~~-~~v~giD~s~~~l~~a-~~~~~~~~~-----~~~v~~~~~d~~---~l~~-~~~- 226 (346)
..+++|||+|||.|...+....++ ..+...|+|.+.++.- -..+..+.. ..+..+...... +..+ ..+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence 367899999999999888888777 5888899988776311 111000000 011111111111 1111 123
Q ss_pred -ceeEEEecchhcccCCHHHH-HHHHHHhcccCceEEEE
Q 019123 227 -KFDAVIASEVIEHVADPAEF-CKSLSALTVSEGATVIS 263 (346)
Q Consensus 227 -~fDlv~~~~~l~~~~~~~~~-l~~~~r~LkpgG~~~~~ 263 (346)
.||+|.++.++......... +-.....++++|++++.
T Consensus 195 ~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 195 THYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred cchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhh
Confidence 79999999999887776665 56666777889887764
No 289
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.71 E-value=0.064 Score=48.18 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=35.7
Q ss_pred CCCeEEEECCCCchhHHHHHHc----------CCeEEEEcCChHHHHHHHHhhcc
Q 019123 160 EGLNIVDVGCGGGILSEPLARM----------GATVTGIDAVEKNIKIARLHADL 204 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~----------~~~v~giD~s~~~l~~a~~~~~~ 204 (346)
.+.+|+|+|+|+|.++..+++. ..+++.+|+|+.+.+.-++++..
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 3479999999999999988774 24899999999999888888765
No 290
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=95.65 E-value=0.025 Score=51.65 Aligned_cols=106 Identities=14% Similarity=0.202 Sum_probs=73.3
Q ss_pred CCCeEEEECCCCchhHHHHHHc--------------C--------CeEEEEcCCh--HHHHHHHHhhccC----------
Q 019123 160 EGLNIVDVGCGGGILSEPLARM--------------G--------ATVTGIDAVE--KNIKIARLHADLD---------- 205 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~--------------~--------~~v~giD~s~--~~l~~a~~~~~~~---------- 205 (346)
+..+||.||+|.|.-...++.. + ..|+.+|+.+ ..+......+...
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 4579999999998543333221 1 3799999985 5666665555444
Q ss_pred --CC----CCceEEEEcCccccccc-------CCceeEEEecchhccc-----CCHHHHHHHHHHhcccCceEEEEec
Q 019123 206 --PE----TSTIEYCCTTAEKLVEE-------QRKFDAVIASEVIEHV-----ADPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 206 --~~----~~~v~~~~~d~~~l~~~-------~~~fDlv~~~~~l~~~-----~~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
.. .-++.|.+.|+..+..+ ....|+|+..|++.-+ ..-.++|..+-.+++||-.|+|++.
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 11 13578999998776532 1357899988877533 2234789999999999999999875
No 291
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.49 E-value=0.12 Score=44.62 Aligned_cols=105 Identities=18% Similarity=0.135 Sum_probs=61.5
Q ss_pred CCCCeEEEECCCCchhHHHHHHc----CCeEEEEcCChHHHHHHHHhhccC-----------------------------
Q 019123 159 FEGLNIVDVGCGGGILSEPLARM----GATVTGIDAVEKNIKIARLHADLD----------------------------- 205 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~----~~~v~giD~s~~~l~~a~~~~~~~----------------------------- 205 (346)
..+-.+-|-+||.|.+.--+.-. -..|++.|+++++++.|++++.-.
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 45679999999999876554322 227999999999999998865432
Q ss_pred ------------CCCCceEEEEcCccccc-----ccCCceeEEEecchhcccCCH---------HHHHHHHHHhcccCce
Q 019123 206 ------------PETSTIEYCCTTAEKLV-----EEQRKFDAVIASEVIEHVADP---------AEFCKSLSALTVSEGA 259 (346)
Q Consensus 206 ------------~~~~~v~~~~~d~~~l~-----~~~~~fDlv~~~~~l~~~~~~---------~~~l~~~~r~LkpgG~ 259 (346)
+........+.|+.+.. ......|+|+.-.-..+++++ ..+|..++.+|-.+++
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 22234667777776532 123346999986655555443 3699999999954555
Q ss_pred EEEE
Q 019123 260 TVIS 263 (346)
Q Consensus 260 ~~~~ 263 (346)
+.+.
T Consensus 210 V~v~ 213 (246)
T PF11599_consen 210 VAVS 213 (246)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5553
No 292
>PTZ00357 methyltransferase; Provisional
Probab=95.42 E-value=0.13 Score=51.72 Aligned_cols=97 Identities=19% Similarity=0.291 Sum_probs=65.4
Q ss_pred CeEEEECCCCchhHHHHHHc----C--CeEEEEcCChHHHHHHHHhh-ccCCC-------CCceEEEEcCcccccccC--
Q 019123 162 LNIVDVGCGGGILSEPLARM----G--ATVTGIDAVEKNIKIARLHA-DLDPE-------TSTIEYCCTTAEKLVEEQ-- 225 (346)
Q Consensus 162 ~~vLDiG~G~G~~~~~l~~~----~--~~v~giD~s~~~l~~a~~~~-~~~~~-------~~~v~~~~~d~~~l~~~~-- 225 (346)
..|+-+|+|-|-+....++. + .+|++||-|+..+.....+. ....+ ...|+++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 46999999999776655543 3 38999999966544443332 21112 346999999999875321
Q ss_pred ---------CceeEEEecchhcccCC---HHHHHHHHHHhccc----Cce
Q 019123 226 ---------RKFDAVIASEVIEHVAD---PAEFCKSLSALTVS----EGA 259 (346)
Q Consensus 226 ---------~~fDlv~~~~~l~~~~~---~~~~l~~~~r~Lkp----gG~ 259 (346)
+++|+|++ ..|.-|.| -+++|.-+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 36898876 34444444 35788888888887 776
No 293
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.42 E-value=0.16 Score=48.59 Aligned_cols=105 Identities=24% Similarity=0.315 Sum_probs=68.3
Q ss_pred CCCCCCeEEEECCCC-chhHHHHHHc-CC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcC-c-ccc-cc-cCCcee
Q 019123 157 RPFEGLNIVDVGCGG-GILSEPLARM-GA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTT-A-EKL-VE-EQRKFD 229 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~-G~~~~~l~~~-~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d-~-~~l-~~-~~~~fD 229 (346)
...++.+||.+|||. |..+..++.. |. +|+++|.++++++.+++.... ..+.+...+ . ..+ .. ....+|
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~----~vi~~~~~~~~~~~l~~~~~~~~~D 256 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA----ETINFEEVDDVVEALRELTGGRGPD 256 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc----EEEcCCcchHHHHHHHHHcCCCCCC
Confidence 345678999999987 8888888776 65 699999999999988875311 111111111 1 111 11 233689
Q ss_pred EEEecchh-----------cc----cCCHHHHHHHHHHhcccCceEEEEec
Q 019123 230 AVIASEVI-----------EH----VADPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 230 lv~~~~~l-----------~~----~~~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
+|+-.-.- .| ..+....+.++.+.|+++|.+++...
T Consensus 257 ~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 257 VCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred EEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 88864321 11 13456788999999999999988753
No 294
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.39 E-value=0.12 Score=53.18 Aligned_cols=127 Identities=16% Similarity=0.146 Sum_probs=75.8
Q ss_pred CCCeEEEECCCCchhHHHHHHc--------------CCeEEEEcCCh---HHHHHH-----------HHhhccC-----C
Q 019123 160 EGLNIVDVGCGGGILSEPLARM--------------GATVTGIDAVE---KNIKIA-----------RLHADLD-----P 206 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~--------------~~~v~giD~s~---~~l~~a-----------~~~~~~~-----~ 206 (346)
...+|||+|-|+|.......+. ..+++.+|..| +.+..+ ++..... +
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 4579999999999755544321 12789999644 222222 1211111 1
Q ss_pred C------CC--ceEEEEcCccccc-ccCCceeEEEecc-hhcccCCH--HHHHHHHHHhcccCceEEEEecCcchHHHHH
Q 019123 207 E------TS--TIEYCCTTAEKLV-EEQRKFDAVIASE-VIEHVADP--AEFCKSLSALTVSEGATVISTINRSMRAYAT 274 (346)
Q Consensus 207 ~------~~--~v~~~~~d~~~l~-~~~~~fDlv~~~~-~l~~~~~~--~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~ 274 (346)
+ .. .++++.+|+.+.- .-...+|+++.-. .-..-+++ +++++.++++++|||.|.--.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t---------- 206 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT---------- 206 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee----------
Confidence 1 11 3456677876532 1235689998642 22222221 479999999999999887332
Q ss_pred HHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEEecc
Q 019123 275 AIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMAGF 319 (346)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~ 319 (346)
....++.-|.++||++....++
T Consensus 207 -----------------------~a~~vr~~l~~~GF~v~~~~~~ 228 (662)
T PRK01747 207 -----------------------SAGFVRRGLQEAGFTVRKVKGF 228 (662)
T ss_pred -----------------------hHHHHHHHHHHcCCeeeecCCC
Confidence 2246677888899988765554
No 295
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.30 E-value=0.14 Score=47.84 Aligned_cols=99 Identities=19% Similarity=0.228 Sum_probs=77.5
Q ss_pred CCeEEEECCCCchhHHHHHHc-CC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc-cCCceeEEEecchh
Q 019123 161 GLNIVDVGCGGGILSEPLARM-GA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE-EQRKFDAVIASEVI 237 (346)
Q Consensus 161 ~~~vLDiG~G~G~~~~~l~~~-~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~fDlv~~~~~l 237 (346)
+.+|||.=+|+|.=+++++.. +. +|+.-|+||.+.+..++++..+.. .+...+..|+..+-. ....||+|=.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~IDi---- 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVIDI---- 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEec----
Confidence 679999999999988888765 44 899999999999999999887732 345555577766543 2467888743
Q ss_pred cccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 238 EHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 238 ~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
.-+..|-.++..+.+.++.||++.+.-
T Consensus 128 DPFGSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 128 DPFGSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CCCCCCchHHHHHHHHhhcCCEEEEEe
Confidence 344567789999999999999998864
No 296
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=95.15 E-value=1.3 Score=39.32 Aligned_cols=106 Identities=13% Similarity=0.106 Sum_probs=71.5
Q ss_pred CCCCeEEEECCCCchhHHHHHHc----C--CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccc-cc-ccCCc-ee
Q 019123 159 FEGLNIVDVGCGGGILSEPLARM----G--ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEK-LV-EEQRK-FD 229 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~----~--~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-l~-~~~~~-fD 229 (346)
..+-.++|+|+|+-.-+..|.+. + .+++.+|++...+....+.+...-..-.+.-+++|.+. +. .+... ==
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 35678999999999877777664 3 38999999999887665555443322345556666543 11 12222 22
Q ss_pred EEEecchhcccCCH--HHHHHHHHHhcccCceEEEEe
Q 019123 230 AVIASEVIEHVADP--AEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 230 lv~~~~~l~~~~~~--~~~l~~~~r~LkpgG~~~~~~ 264 (346)
.++..-.|.+++.- ..+|.++..+|.||-+|++.+
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 33445577888643 468999999999999999864
No 297
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.13 E-value=0.063 Score=48.90 Aligned_cols=69 Identities=13% Similarity=0.076 Sum_probs=53.7
Q ss_pred eEEEECCCCchhHHHHHHcCCe-EEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccccc--CCceeEEEecchhc
Q 019123 163 NIVDVGCGGGILSEPLARMGAT-VTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEE--QRKFDAVIASEVIE 238 (346)
Q Consensus 163 ~vLDiG~G~G~~~~~l~~~~~~-v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~--~~~fDlv~~~~~l~ 238 (346)
+|+|+.||.|.+...+...|.+ |.++|+++.+++..+.+.... ++.+|+.++... ...+|+++...-..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~-------~~~~Di~~~~~~~~~~~~D~l~~gpPCq 73 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKDFIPDIDLLTGGFPCQ 73 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC-------CccCccccCchhhcCCCCCEEEeCCCCh
Confidence 6899999999999999888885 788999999999888876421 456677666532 35699999866443
No 298
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.05 E-value=0.094 Score=48.26 Aligned_cols=77 Identities=21% Similarity=0.216 Sum_probs=57.0
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc------cCCce
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE------EQRKF 228 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~------~~~~f 228 (346)
.+.++..+||.--|.|..+..+++. +.+|+|+|.++.+++.+++++... ..++.++..++.++.. .-..+
T Consensus 17 ~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~~~~~~ 94 (310)
T PF01795_consen 17 NPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELNGINKV 94 (310)
T ss_dssp T--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTTTTS-E
T ss_pred CcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHccCCCcc
Confidence 3457789999999999999999986 569999999999999999988755 3789999999987741 23478
Q ss_pred eEEEecc
Q 019123 229 DAVIASE 235 (346)
Q Consensus 229 Dlv~~~~ 235 (346)
|.|+.-.
T Consensus 95 dgiL~DL 101 (310)
T PF01795_consen 95 DGILFDL 101 (310)
T ss_dssp EEEEEE-
T ss_pred CEEEEcc
Confidence 8888744
No 299
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=94.90 E-value=0.18 Score=44.21 Aligned_cols=120 Identities=18% Similarity=0.188 Sum_probs=75.7
Q ss_pred cccChhHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHHHHHc-C--CeEEEEcCCh----HHHHHHHHhhc
Q 019123 131 HALNPTRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARM-G--ATVTGIDAVE----KNIKIARLHAD 203 (346)
Q Consensus 131 ~~~n~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~--~~v~giD~s~----~~l~~a~~~~~ 203 (346)
...|+.|..+....+.- +......++.+||-+|.++|.....+.+- | .-|++++.|+ +.+..|+++
T Consensus 132 RVWnPfrSKLAA~I~gG-----vdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-- 204 (317)
T KOG1596|consen 132 RVWNPFRSKLAAGILGG-----VDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-- 204 (317)
T ss_pred EEeChHHHHHHHHhhcC-----ccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--
Confidence 45577765554433322 11245678999999999999988877765 2 2599999987 344555554
Q ss_pred cCCCCCceEEEEcCccccc---ccCCceeEEEecchhcccCCHH---HHHHHHHHhcccCceEEEEecCc
Q 019123 204 LDPETSTIEYCCTTAEKLV---EEQRKFDAVIASEVIEHVADPA---EFCKSLSALTVSEGATVISTINR 267 (346)
Q Consensus 204 ~~~~~~~v~~~~~d~~~l~---~~~~~fDlv~~~~~l~~~~~~~---~~l~~~~r~LkpgG~~~~~~~~~ 267 (346)
.||--+..|+.... ..-.-.|+|++. +..++ -+.-++.-.||+||.|++..-..
T Consensus 205 -----tNiiPIiEDArhP~KYRmlVgmVDvIFaD-----vaqpdq~RivaLNA~~FLk~gGhfvisikan 264 (317)
T KOG1596|consen 205 -----TNIIPIIEDARHPAKYRMLVGMVDVIFAD-----VAQPDQARIVALNAQYFLKNGGHFVISIKAN 264 (317)
T ss_pred -----CCceeeeccCCCchheeeeeeeEEEEecc-----CCCchhhhhhhhhhhhhhccCCeEEEEEecc
Confidence 45666666775532 112356666653 23332 23456778899999999976543
No 300
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=94.85 E-value=0.2 Score=44.89 Aligned_cols=101 Identities=30% Similarity=0.265 Sum_probs=67.8
Q ss_pred CCCCCCCeEEEECCCCchhHHHHH--HcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccc-cc-cCCceeEE
Q 019123 156 ARPFEGLNIVDVGCGGGILSEPLA--RMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKL-VE-EQRKFDAV 231 (346)
Q Consensus 156 ~~~~~~~~vLDiG~G~G~~~~~l~--~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l-~~-~~~~fDlv 231 (346)
.+...++.|+-+| -.-..++.++ ....+|..+||++..+....+.+...++ .|++.+..|+.+. |. -...||+.
T Consensus 148 RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~plpe~~~~kFDvf 225 (354)
T COG1568 148 RGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRNPLPEDLKRKFDVF 225 (354)
T ss_pred ccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhcccChHHHHhhCCee
Confidence 3566788899998 3322333333 3344899999999999999998888887 6788888888663 21 24689988
Q ss_pred EecchhcccCCHHH-------HHHHHHHhcccC---ceEEEEecC
Q 019123 232 IASEVIEHVADPAE-------FCKSLSALTVSE---GATVISTIN 266 (346)
Q Consensus 232 ~~~~~l~~~~~~~~-------~l~~~~r~Lkpg---G~~~~~~~~ 266 (346)
+. ||+. ++..=...||.- |+|.+....
T Consensus 226 iT--------DPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~re 262 (354)
T COG1568 226 IT--------DPPETIKALKLFLGRGIATLKGEGCAGYFGITRRE 262 (354)
T ss_pred ec--------CchhhHHHHHHHHhccHHHhcCCCccceEeeeecc
Confidence 74 5544 343334556654 777776543
No 301
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.59 E-value=0.031 Score=53.82 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=82.0
Q ss_pred CCCCeEEEECCCCchhHHHHHHc--CC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----cCCceeEE
Q 019123 159 FEGLNIVDVGCGGGILSEPLARM--GA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----EQRKFDAV 231 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~--~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----~~~~fDlv 231 (346)
.++.+|||.=|++|.-+++.+.. |. +|++.|.++..+...+.++.-++....++....|+..+-. ....||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 35679999999999988888876 32 8999999999999999998888776677788888765532 35789988
Q ss_pred EecchhcccCCHHHHHHHHHHhcccCceEEEEec
Q 019123 232 IASEVIEHVADPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 232 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
-.- -+..+..+|..+.+.+..||+++|..-
T Consensus 188 DLD----PyGs~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 188 DLD----PYGSPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred ecC----CCCCccHHHHHHHHHhhcCCEEEEEec
Confidence 642 334566899999999999999999753
No 302
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.53 E-value=0.22 Score=49.14 Aligned_cols=98 Identities=13% Similarity=0.184 Sum_probs=64.9
Q ss_pred CCCCCCeEEEECCCCc-hhHHHHHH-cCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccc--------------
Q 019123 157 RPFEGLNIVDVGCGGG-ILSEPLAR-MGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEK-------------- 220 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G-~~~~~l~~-~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-------------- 220 (346)
...++.+||=+|+|.= ..+..++. .|+.|+++|.++..++.++.. . .+++..|..+
T Consensus 160 g~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l-G-------a~~v~v~~~e~g~~~~gYa~~~s~ 231 (511)
T TIGR00561 160 GKVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM-G-------AEFLELDFKEEGGSGDGYAKVMSE 231 (511)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-C-------CeEEeccccccccccccceeecCH
Confidence 4456789999999854 44444444 488999999999988877752 1 1222222211
Q ss_pred ---------ccccCCceeEEEecchhcccCCHHHHHHHHHHhcccCceEEE
Q 019123 221 ---------LVEEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVI 262 (346)
Q Consensus 221 ---------l~~~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~ 262 (346)
++..-..+|+|+..-.+..-+.|.-+.+++.+.+|||+.++-
T Consensus 232 ~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 232 EFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 111124699998877665555555577888999999988764
No 303
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=94.51 E-value=0.023 Score=43.65 Aligned_cols=38 Identities=16% Similarity=0.405 Sum_probs=28.1
Q ss_pred ceeEEEecchhccc--C--C--HHHHHHHHHHhcccCceEEEEe
Q 019123 227 KFDAVIASEVIEHV--A--D--PAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 227 ~fDlv~~~~~l~~~--~--~--~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
.||+|+|.-+.-++ . | ...+++.+++.|+|||.|++.-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 48999998766533 2 2 4578999999999999998864
No 304
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=94.47 E-value=0.11 Score=45.14 Aligned_cols=42 Identities=24% Similarity=0.293 Sum_probs=35.4
Q ss_pred CCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHH
Q 019123 159 FEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARL 200 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~ 200 (346)
.++..|||.-||+|..+......|-+.+|+|+++...+.|++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 368899999999999999999999999999999999998864
No 305
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=94.44 E-value=0.24 Score=45.01 Aligned_cols=77 Identities=19% Similarity=0.150 Sum_probs=63.3
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHcC---CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc-----cCCce
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARMG---ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE-----EQRKF 228 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~-----~~~~f 228 (346)
.+.++...||.--|.|..+..+++.. .+++|+|-++.+++.|+++....+ +++.+++.++.++.. .-.++
T Consensus 20 ~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~~i~~v 97 (314)
T COG0275 20 APKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKELGIGKV 97 (314)
T ss_pred ccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhcCCCce
Confidence 55677899999999999999999984 479999999999999999987655 789999999877642 23477
Q ss_pred eEEEecc
Q 019123 229 DAVIASE 235 (346)
Q Consensus 229 Dlv~~~~ 235 (346)
|-|+.-.
T Consensus 98 DGiL~DL 104 (314)
T COG0275 98 DGILLDL 104 (314)
T ss_pred eEEEEec
Confidence 7777643
No 306
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=94.42 E-value=0.39 Score=47.47 Aligned_cols=108 Identities=17% Similarity=0.164 Sum_probs=73.1
Q ss_pred CCCCeEEEECCCCchhHHHHHHc----C--CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc-----cCCc
Q 019123 159 FEGLNIVDVGCGGGILSEPLARM----G--ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE-----EQRK 227 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~----~--~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~-----~~~~ 227 (346)
.+..+|+|.+||+|.+.....+. . ..++|.|+++.+...++.++.-.++..++....+|-..-|. ..+.
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~ 264 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGK 264 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccc
Confidence 45569999999999877665543 2 56999999999999999887766653334444444332221 2356
Q ss_pred eeEEEecchhc---cc---------------------CCH-HHHHHHHHHhcccCceEEEEecC
Q 019123 228 FDAVIASEVIE---HV---------------------ADP-AEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 228 fDlv~~~~~l~---~~---------------------~~~-~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
||+|+++--+. +. ... ..++..+...|+|||...+..+.
T Consensus 265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~ 328 (489)
T COG0286 265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD 328 (489)
T ss_pred eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence 99888743221 10 001 46889999999999877766654
No 307
>PRK11524 putative methyltransferase; Provisional
Probab=94.40 E-value=0.12 Score=47.19 Aligned_cols=46 Identities=20% Similarity=0.160 Sum_probs=42.7
Q ss_pred CCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhcc
Q 019123 159 FEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADL 204 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~ 204 (346)
.++..|||.-||+|..+......|-+++|+|++++.++.+++++..
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999999999999753
No 308
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.40 E-value=0.18 Score=45.99 Aligned_cols=100 Identities=19% Similarity=0.178 Sum_probs=75.4
Q ss_pred CCCeEEEECCCC-chhHHHHHH-cCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchh
Q 019123 160 EGLNIVDVGCGG-GILSEPLAR-MGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVI 237 (346)
Q Consensus 160 ~~~~vLDiG~G~-G~~~~~l~~-~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l 237 (346)
++.+|.=||+|. |..+..++- .|++|+.+|+|.+-+.+....+. .++...-.+...+...-.+.|+|+..-.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIgaVLI 241 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIGAVLI 241 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEEEEEe
Confidence 456788888885 555555543 48899999999988888777654 46777777776665444578999987777
Q ss_pred cccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 238 EHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 238 ~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
---..|.-..+++.+.+|||+.++=.-
T Consensus 242 pgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 242 PGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred cCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 667778889999999999999877543
No 309
>PRK11524 putative methyltransferase; Provisional
Probab=94.31 E-value=0.28 Score=44.84 Aligned_cols=55 Identities=13% Similarity=0.037 Sum_probs=39.1
Q ss_pred CceEEEEcCccccc--ccCCceeEEEec--chhc-c---c----------CCHHHHHHHHHHhcccCceEEEE
Q 019123 209 STIEYCCTTAEKLV--EEQRKFDAVIAS--EVIE-H---V----------ADPAEFCKSLSALTVSEGATVIS 263 (346)
Q Consensus 209 ~~v~~~~~d~~~l~--~~~~~fDlv~~~--~~l~-~---~----------~~~~~~l~~~~r~LkpgG~~~~~ 263 (346)
.+..++++|+.+.. +++++||+|++. +.+. . . .-...++.+++++|||||.|++.
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34568889987752 568899999994 2220 0 0 01246899999999999999986
No 310
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.09 E-value=0.93 Score=42.40 Aligned_cols=122 Identities=14% Similarity=0.073 Sum_probs=82.5
Q ss_pred CCeEEEECCCCchhHHHHHHcCC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccccc---CCceeEEEecch
Q 019123 161 GLNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEE---QRKFDAVIASEV 236 (346)
Q Consensus 161 ~~~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~---~~~fDlv~~~~~ 236 (346)
..+++|+-||.|.+...+...|+ -+.++|+++.+++..+.+... ..+...|+.++... ...+|+++...-
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCCC
Confidence 46899999999999999998887 488999999999988888753 34566666554321 117899998665
Q ss_pred hcccC---------CHH----HHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHH
Q 019123 237 IEHVA---------DPA----EFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELV 303 (346)
Q Consensus 237 l~~~~---------~~~----~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (346)
...+. |+. --+.++...++| .+++.|-.+.... . ..-..+.+.
T Consensus 77 CQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~~----------------~------~~~~~~~i~ 132 (328)
T COG0270 77 CQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLLS----------------S------KGQTFDEIK 132 (328)
T ss_pred CcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHHh----------------c------CchHHHHHH
Confidence 54442 222 233445556677 5666654432211 0 123457899
Q ss_pred HHHHHCCCc
Q 019123 304 LILQRASID 312 (346)
Q Consensus 304 ~ll~~aGF~ 312 (346)
..|++.||.
T Consensus 133 ~~L~~~GY~ 141 (328)
T COG0270 133 KELEELGYG 141 (328)
T ss_pred HHHHHcCCc
Confidence 999999997
No 311
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.98 E-value=0.33 Score=44.56 Aligned_cols=102 Identities=19% Similarity=0.244 Sum_probs=67.5
Q ss_pred CCCCCCCeEEEECCCC-chhHHHHHHc-CC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEc--Cccccc------cc
Q 019123 156 ARPFEGLNIVDVGCGG-GILSEPLARM-GA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCT--TAEKLV------EE 224 (346)
Q Consensus 156 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~--d~~~l~------~~ 224 (346)
...+.+.+||=+|+|+ |..+...++. |+ +|+++|+++.-++.|++ +.... +..... +...+. .-
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~----~~~~~~~~~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATV----TDPSSHKSSPQELAELVEKALG 239 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeE----EeeccccccHHHHHHHHHhhcc
Confidence 4667889999999996 5555555554 55 89999999999999998 43221 111111 111111 12
Q ss_pred CCceeEEEecchhcccCCHHHHHHHHHHhcccCceEEEEecCcc
Q 019123 225 QRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTINRS 268 (346)
Q Consensus 225 ~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~ 268 (346)
...+|+.+-.-.+ +..++.+...|++||.+++..+...
T Consensus 240 ~~~~d~~~dCsG~------~~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 240 KKQPDVTFDCSGA------EVTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred ccCCCeEEEccCc------hHHHHHHHHHhccCCEEEEeccCCC
Confidence 2458888755433 4567777889999999888876543
No 312
>PRK13699 putative methylase; Provisional
Probab=93.71 E-value=0.13 Score=45.36 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=42.1
Q ss_pred CCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhcc
Q 019123 159 FEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADL 204 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~ 204 (346)
.++..|||.-||+|..+......|.+++|+|++++..+.+.+++..
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 4778999999999999999999999999999999999999888754
No 313
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.52 E-value=0.45 Score=44.58 Aligned_cols=97 Identities=16% Similarity=0.204 Sum_probs=58.6
Q ss_pred CCCCeEEEECCC-CchhHHHHHHc-CC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecc
Q 019123 159 FEGLNIVDVGCG-GGILSEPLARM-GA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASE 235 (346)
Q Consensus 159 ~~~~~vLDiG~G-~G~~~~~l~~~-~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~ 235 (346)
.++.+||=+||| .|..+..++.. |+ +|+++|.+++.++.+++.-... -+.....+..++....+.+|+|+-.-
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~----vi~~~~~~~~~~~~~~g~~D~vid~~ 243 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADK----LVNPQNDDLDHYKAEKGYFDVSFEVS 243 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcE----EecCCcccHHHHhccCCCCCEEEECC
Confidence 367888888875 33455555554 76 6999999999998887632110 01111112222211123588887542
Q ss_pred hhcccCCHHHHHHHHHHhcccCceEEEEec
Q 019123 236 VIEHVADPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 236 ~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
. . ...+..+.+.|++||.+++...
T Consensus 244 G-----~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 244 G-----H-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred C-----C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 2 2 3467788899999999988754
No 314
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=93.48 E-value=0.18 Score=40.07 Aligned_cols=79 Identities=22% Similarity=0.333 Sum_probs=50.8
Q ss_pred ceEEEEcCcccc-cccCCceeEEEecchhcccCCH----HHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhh
Q 019123 210 TIEYCCTTAEKL-VEEQRKFDAVIASEVIEHVADP----AEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILH 284 (346)
Q Consensus 210 ~v~~~~~d~~~l-~~~~~~fDlv~~~~~l~~~~~~----~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (346)
.+.++.+|+.+. +.-...||+|+... +.--.+| .++++.++++++|||.+..-.
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys-------------------- 90 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLATYS-------------------- 90 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEES---------------------
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEEee--------------------
Confidence 467778888653 32347899998753 2222233 479999999999999775321
Q ss_pred hcCCCccccccCCCHHHHHHHHHHCCCcEEEEeccccC
Q 019123 285 WLPKGTHQWSSFLTPEELVLILQRASIDVKEMAGFVYN 322 (346)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~ 322 (346)
....++..|.++||.+.+..++.-+
T Consensus 91 -------------~a~~Vr~~L~~aGF~v~~~~g~g~K 115 (124)
T PF05430_consen 91 -------------SAGAVRRALQQAGFEVEKVPGFGRK 115 (124)
T ss_dssp --------------BHHHHHHHHHCTEEEEEEE-STTS
T ss_pred -------------chHHHHHHHHHcCCEEEEcCCCCCc
Confidence 2246788999999999887776443
No 315
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=93.46 E-value=0.9 Score=41.99 Aligned_cols=94 Identities=16% Similarity=0.223 Sum_probs=61.6
Q ss_pred CCCCCeEEEECCC-CchhHHHHHHc-CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccc-c-----cccCCcee
Q 019123 158 PFEGLNIVDVGCG-GGILSEPLARM-GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEK-L-----VEEQRKFD 229 (346)
Q Consensus 158 ~~~~~~vLDiG~G-~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-l-----~~~~~~fD 229 (346)
..++.+||..|+| .|..+..++.. |.+|++++.++...+.+++.- . ..+..+-.. . ......+|
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g----~----~~~~~~~~~~~~~~~~~~~~~~~D 234 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELG----A----DEVLNSLDDSPKDKKAAGLGGGFD 234 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhC----C----CEEEcCCCcCHHHHHHHhcCCCce
Confidence 4567788888876 36666666664 889999999999888875521 1 111111111 0 12345789
Q ss_pred EEEecchhcccCCHHHHHHHHHHhcccCceEEEEec
Q 019123 230 AVIASEVIEHVADPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 230 lv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
+|+.... ....+.++.+.|+++|.++....
T Consensus 235 ~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 235 VIFDFVG------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred EEEECCC------CHHHHHHHHHHhhcCCEEEEECC
Confidence 8875421 24578889999999999987643
No 316
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=93.23 E-value=0.8 Score=38.34 Aligned_cols=84 Identities=17% Similarity=0.125 Sum_probs=56.9
Q ss_pred EEEcCcccccc----cCCceeEEEecchhcc-----cC-C-------HHHHHHHHHHhcccCceEEEEecCcchHHHHHH
Q 019123 213 YCCTTAEKLVE----EQRKFDAVIASEVIEH-----VA-D-------PAEFCKSLSALTVSEGATVISTINRSMRAYATA 275 (346)
Q Consensus 213 ~~~~d~~~l~~----~~~~fDlv~~~~~l~~-----~~-~-------~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~ 275 (346)
.+..|+.++.. ..+.||.|+.++-.-. -. + ...+++.+..+|+++|.+.|.-.....
T Consensus 57 ~~~VDat~l~~~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p------ 130 (166)
T PF10354_consen 57 LHGVDATKLHKHFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP------ 130 (166)
T ss_pred ccCCCCCcccccccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC------
Confidence 45668877752 4678999998763322 00 1 236889999999999999998654321
Q ss_pred HHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEEeccccCC
Q 019123 276 IIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMAGFVYNP 323 (346)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~ 323 (346)
|+.=.+..+.+.+||..++...+....
T Consensus 131 ---------------------y~~W~i~~lA~~~gl~l~~~~~F~~~~ 157 (166)
T PF10354_consen 131 ---------------------YDSWNIEELAAEAGLVLVRKVPFDPSD 157 (166)
T ss_pred ---------------------CccccHHHHHHhcCCEEEEEecCCHHH
Confidence 222366788999999998876654433
No 317
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=92.95 E-value=0.56 Score=43.83 Aligned_cols=48 Identities=17% Similarity=0.202 Sum_probs=38.5
Q ss_pred CCCCCeEEEECCCCchhHHHHHHc----------CCeEEEEcCChHHHHHHHHhhccC
Q 019123 158 PFEGLNIVDVGCGGGILSEPLARM----------GATVTGIDAVEKNIKIARLHADLD 205 (346)
Q Consensus 158 ~~~~~~vLDiG~G~G~~~~~l~~~----------~~~v~giD~s~~~l~~a~~~~~~~ 205 (346)
...+..++|+|.|+|.++..++.. ..++..|++|++....-+++++..
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 335678999999999998888764 348999999999888777776654
No 318
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=92.83 E-value=7 Score=37.29 Aligned_cols=100 Identities=21% Similarity=0.253 Sum_probs=58.4
Q ss_pred CCCeEEEECCCCch----hHHHHHHc--C---CeEEEEcC----ChHHHHHHHHhhcc----CCCCCceEEEEc---Ccc
Q 019123 160 EGLNIVDVGCGGGI----LSEPLARM--G---ATVTGIDA----VEKNIKIARLHADL----DPETSTIEYCCT---TAE 219 (346)
Q Consensus 160 ~~~~vLDiG~G~G~----~~~~l~~~--~---~~v~giD~----s~~~l~~a~~~~~~----~~~~~~v~~~~~---d~~ 219 (346)
....|+|+|.|.|. +...|+.+ | .++|||+. +...++.+.+++.. .++ ..+|... +.+
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv--~fef~~v~~~~~e 187 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGV--PFEFHPVVVESLE 187 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCc--cEEEEecccCchh
Confidence 55689999999993 33344443 2 28999999 66677666555433 333 3555553 333
Q ss_pred ccc-----ccCCceeEEEecchhcccCC-------HH-HHHHHHHHhcccCceEEE
Q 019123 220 KLV-----EEQRKFDAVIASEVIEHVAD-------PA-EFCKSLSALTVSEGATVI 262 (346)
Q Consensus 220 ~l~-----~~~~~fDlv~~~~~l~~~~~-------~~-~~l~~~~r~LkpgG~~~~ 262 (346)
++. ..++.+=+|-|.+.++|+.+ +. .+|+ ..+.|+|.-++++
T Consensus 188 ~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~-~ir~L~P~vvv~~ 242 (374)
T PF03514_consen 188 DLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLR-VIRSLNPKVVVLV 242 (374)
T ss_pred hCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHH-HHHhcCCCEEEEE
Confidence 332 22344444456677888852 22 3554 4457899854444
No 319
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=92.82 E-value=0.46 Score=37.44 Aligned_cols=85 Identities=21% Similarity=0.263 Sum_probs=58.5
Q ss_pred CCchhHHHHHHc-CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc------ccCCceeEEEecchhcccCC
Q 019123 170 GGGILSEPLARM-GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV------EEQRKFDAVIASEVIEHVAD 242 (346)
Q Consensus 170 G~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~------~~~~~fDlv~~~~~l~~~~~ 242 (346)
|.|..+..++.. |.+|+++|.++.-++.+++.-. -.++..+-.++. .....+|+|+-.-.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga-------~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------ 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGA-------DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG------ 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTE-------SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS------
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcc-------cccccccccccccccccccccccceEEEEecC------
Confidence 457777777775 8899999999999998877531 122222222111 12347999985432
Q ss_pred HHHHHHHHHHhcccCceEEEEecCc
Q 019123 243 PAEFCKSLSALTVSEGATVISTINR 267 (346)
Q Consensus 243 ~~~~l~~~~r~LkpgG~~~~~~~~~ 267 (346)
-...+..+..+|+|||.+++.....
T Consensus 68 ~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred cHHHHHHHHHHhccCCEEEEEEccC
Confidence 2578899999999999999987653
No 320
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.81 E-value=0.44 Score=44.98 Aligned_cols=97 Identities=23% Similarity=0.278 Sum_probs=63.6
Q ss_pred CCCeEEEECCCC-chhHHHHHHc-CC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEc-Cc-ccc-cccC-CceeEEE
Q 019123 160 EGLNIVDVGCGG-GILSEPLARM-GA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCT-TA-EKL-VEEQ-RKFDAVI 232 (346)
Q Consensus 160 ~~~~vLDiG~G~-G~~~~~l~~~-~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~-d~-~~l-~~~~-~~fDlv~ 232 (346)
++.+|+=+|||+ |.++..++.. |+ +|+++|.++.-++.|++...... +..... +. ... .... ..+|+++
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~----~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADV----VVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeE----eecCccccHHHHHHHHhCCCCCCEEE
Confidence 444999999996 5565666655 54 89999999999999988543211 111111 11 001 1112 3699998
Q ss_pred ecchhcccCCHHHHHHHHHHhcccCceEEEEecC
Q 019123 233 ASEVIEHVADPAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 233 ~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
=.-+ ....+..+.++++|||.+.+.-..
T Consensus 244 e~~G------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 244 EAVG------SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred ECCC------CHHHHHHHHHHhcCCCEEEEEecc
Confidence 5544 235888999999999999887654
No 321
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=92.78 E-value=0.8 Score=40.90 Aligned_cols=125 Identities=10% Similarity=0.017 Sum_probs=72.7
Q ss_pred ChhHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHHHHH---c----CCeEEEEcCCh--------------
Q 019123 134 NPTRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLAR---M----GATVTGIDAVE-------------- 192 (346)
Q Consensus 134 n~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~---~----~~~v~giD~s~-------------- 192 (346)
...|+..+.+.+...+.. .-+..|+|+||-.|..+..++. . .-+++++|--.
T Consensus 55 g~~Rl~~L~~~~~~v~~~-------~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~ 127 (248)
T PF05711_consen 55 GRERLDNLYQAVEQVLAE-------DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADK 127 (248)
T ss_dssp HHHHHHHHHHHHHHCCHT-------TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCC
T ss_pred CHHHHHHHHHHHHHHHhc-------CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccc
Confidence 345666666666654421 2345899999999987665432 1 23688887421
Q ss_pred ------------HHHHHHHHhhccCCC-CCceEEEEcCccc-ccc-cCCceeEEEecchhcccCCHHHHHHHHHHhcccC
Q 019123 193 ------------KNIKIARLHADLDPE-TSTIEYCCTTAEK-LVE-EQRKFDAVIASEVIEHVADPAEFCKSLSALTVSE 257 (346)
Q Consensus 193 ------------~~l~~a~~~~~~~~~-~~~v~~~~~d~~~-l~~-~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~Lkpg 257 (346)
..++..++++...++ ..++.++.+.+.+ +|. +...+-++.+-.- .......+|..++..|.||
T Consensus 128 ~~~~~~~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~D--lYesT~~aLe~lyprl~~G 205 (248)
T PF05711_consen 128 GWEFHEYNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCD--LYESTKDALEFLYPRLSPG 205 (248)
T ss_dssp HCTCCGCCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEEE
T ss_pred hhhhhhcccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEecc--chHHHHHHHHHHHhhcCCC
Confidence 134556666666554 4689999999854 332 3344443333221 1123457999999999999
Q ss_pred ceEEEEecCc
Q 019123 258 GATVISTINR 267 (346)
Q Consensus 258 G~~~~~~~~~ 267 (346)
|++++.+++.
T Consensus 206 GiIi~DDY~~ 215 (248)
T PF05711_consen 206 GIIIFDDYGH 215 (248)
T ss_dssp EEEEESSTTT
T ss_pred eEEEEeCCCC
Confidence 9999998765
No 322
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=92.57 E-value=0.59 Score=45.02 Aligned_cols=108 Identities=15% Similarity=0.089 Sum_probs=68.0
Q ss_pred CCCCeEEEECCCCch--hHHHHHHcC--CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEc-Cc--ccccc-cCCceeE
Q 019123 159 FEGLNIVDVGCGGGI--LSEPLARMG--ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCT-TA--EKLVE-EQRKFDA 230 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~--~~~~l~~~~--~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~-d~--~~l~~-~~~~fDl 230 (346)
..+..++|+|.|.|. ++...+..+ ..++.||.+..|+...........-...+ ++.. .+ .-+|. ..+.||+
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~-~v~~~~~~r~~~pi~~~~~yDl 277 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEP-IVRKLVFHRQRLPIDIKNGYDL 277 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCch-hccccchhcccCCCCcccceee
Confidence 455678889888775 444444333 37999999999999888776551100111 1111 11 11232 3556999
Q ss_pred EEecchhcccCCHH---HHHHH-HHHhcccCceEEEEecCc
Q 019123 231 VIASEVIEHVADPA---EFCKS-LSALTVSEGATVISTINR 267 (346)
Q Consensus 231 v~~~~~l~~~~~~~---~~l~~-~~r~LkpgG~~~~~~~~~ 267 (346)
|++.+.++++.+.. ...+. ..+..++||.+++.+...
T Consensus 278 vi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 278 VICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred EEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 99999999988753 33444 445578888888887654
No 323
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=92.39 E-value=0.55 Score=41.63 Aligned_cols=97 Identities=25% Similarity=0.300 Sum_probs=59.7
Q ss_pred CCCCeEEEECCCC-chhHHHHHHc-CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccc-c-cccCCceeEEEec
Q 019123 159 FEGLNIVDVGCGG-GILSEPLARM-GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEK-L-VEEQRKFDAVIAS 234 (346)
Q Consensus 159 ~~~~~vLDiG~G~-G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-l-~~~~~~fDlv~~~ 234 (346)
.++.+||-.|+|. |..+..++.. |.+|++++.++...+.++...... -+.....+... + ......+|+|+..
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~d~vi~~ 208 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADH----VIDYKEEDLEEELRLTGGGGADVVIDA 208 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCce----eccCCcCCHHHHHHHhcCCCCCEEEEC
Confidence 5678999999985 5555555554 789999999988877775432110 01110001000 0 1124569998854
Q ss_pred chhcccCCHHHHHHHHHHhcccCceEEEEec
Q 019123 235 EVIEHVADPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 235 ~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
.. . ...+..+.+.|+++|.++....
T Consensus 209 ~~-----~-~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 209 VG-----G-PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred CC-----C-HHHHHHHHHhcccCCEEEEEcc
Confidence 32 1 1457778889999999987654
No 324
>PRK10458 DNA cytosine methylase; Provisional
Probab=91.91 E-value=4.6 Score=39.63 Aligned_cols=59 Identities=10% Similarity=0.118 Sum_probs=43.1
Q ss_pred CCCeEEEECCCCchhHHHHHHcCC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccc
Q 019123 160 EGLNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKL 221 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l 221 (346)
...+++|+-||.|.+...+-..|. -|.++|+++.+.+..+.+.... +....+..|+.++
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~~DI~~i 146 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD---PATHRFNEDIRDI 146 (467)
T ss_pred CCceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC---CccceeccChhhC
Confidence 356999999999999999988887 5788999999888877765321 1233444555544
No 325
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.78 E-value=6.3 Score=36.28 Aligned_cols=155 Identities=10% Similarity=-0.043 Sum_probs=92.9
Q ss_pred CCeEEEECCCCchhHHHHHHc-CCeEEEEcCChHHHHHHHHhhccCCC--CCceEEEEcCccccc----cc-----CCce
Q 019123 161 GLNIVDVGCGGGILSEPLARM-GATVTGIDAVEKNIKIARLHADLDPE--TSTIEYCCTTAEKLV----EE-----QRKF 228 (346)
Q Consensus 161 ~~~vLDiG~G~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~~~~~--~~~v~~~~~d~~~l~----~~-----~~~f 228 (346)
-..|+-+|||-=.-+.++-.. +..|+-+|. |+.++.=++.+...+. +....++..|+.+-. .. .+.-
T Consensus 93 ~~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~p 171 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRP 171 (297)
T ss_pred ccEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCC
Confidence 468999999986666655433 346666665 6777776666666543 246889999997321 12 3344
Q ss_pred eEEEecchhcccCC--HHHHHHHHHHhcccCceEEEEecCcchHHHHHH-HHHHHHHhhhcCCCccccccCCCHHHHHHH
Q 019123 229 DAVIASEVIEHVAD--PAEFCKSLSALTVSEGATVISTINRSMRAYATA-IIAAEHILHWLPKGTHQWSSFLTPEELVLI 305 (346)
Q Consensus 229 Dlv~~~~~l~~~~~--~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (346)
=++++-+++.+++. ..++|..+...+.||-.++.....+........ .........+......-+.......+++.+
T Consensus 172 t~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~~ 251 (297)
T COG3315 172 TLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEIETW 251 (297)
T ss_pred eEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHHHHH
Confidence 57777788888875 346889999988888877776542211100000 000000000000011112234568999999
Q ss_pred HHHCCCcEEEE
Q 019123 306 LQRASIDVKEM 316 (346)
Q Consensus 306 l~~aGF~~v~~ 316 (346)
+.+.||..+..
T Consensus 252 l~~~g~~~~~~ 262 (297)
T COG3315 252 LAERGWRSTLN 262 (297)
T ss_pred HHhcCEEEEec
Confidence 99999998764
No 326
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=91.64 E-value=0.48 Score=43.81 Aligned_cols=66 Identities=17% Similarity=0.195 Sum_probs=51.8
Q ss_pred eEEEECCCCchhHHHHHHcCC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc---ccCCceeEEEecchh
Q 019123 163 NIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV---EEQRKFDAVIASEVI 237 (346)
Q Consensus 163 ~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~---~~~~~fDlv~~~~~l 237 (346)
+++|+-||.|.+...+...|. -+.++|+++.+.+..+.+.. ....+|+.++. ++. .+|+++...-.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~ggpPC 71 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGGPPC 71 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE---
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEeccCC
Confidence 799999999999999999987 68999999999999888873 57888888775 343 59999986543
No 327
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.77 E-value=3.9 Score=35.65 Aligned_cols=103 Identities=13% Similarity=0.093 Sum_probs=62.1
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~~ 226 (346)
.+++||-.|++.| .++..+++.|++|++++-+++.++...+..... .++.++.+|+.+... .-+
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 4568888887644 344555567999999999887766554433322 357788888765320 013
Q ss_pred ceeEEEecchhcccC---C--------------HHHHHHHHHHhcccCceEEEEec
Q 019123 227 KFDAVIASEVIEHVA---D--------------PAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 227 ~fDlv~~~~~l~~~~---~--------------~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
.+|.++......... + +-.+++.+...++++|.+++...
T Consensus 81 ~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 81 AIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 468777655432110 1 11235566666777887777543
No 328
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=90.50 E-value=1.3 Score=44.25 Aligned_cols=97 Identities=14% Similarity=0.114 Sum_probs=62.2
Q ss_pred CCCCeEEEECCCCchhHHHHHHc---CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccc----c----ccCCc
Q 019123 159 FEGLNIVDVGCGGGILSEPLARM---GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKL----V----EEQRK 227 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l----~----~~~~~ 227 (346)
.+...|||+||.+|.|..-.++. |.-|+|+|+-| +... ++|.-++.|+... + .....
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p---------ikp~---~~c~t~v~dIttd~cr~~l~k~l~t~~ 110 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP---------IKPI---PNCDTLVEDITTDECRSKLRKILKTWK 110 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee---------cccC---CccchhhhhhhHHHHHHHHHHHHHhCC
Confidence 46778999999999999887775 56899999976 3322 4555556665332 1 12345
Q ss_pred eeEEEecchhc----ccCC-------HHHHHHHHHHhcccCceEEEEecCc
Q 019123 228 FDAVIASEVIE----HVAD-------PAEFCKSLSALTVSEGATVISTINR 267 (346)
Q Consensus 228 fDlv~~~~~l~----~~~~-------~~~~l~~~~r~LkpgG~~~~~~~~~ 267 (346)
.|+|+.-.+-. ++.| ....|+-+...|..||.|+--.+..
T Consensus 111 advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfrs 161 (780)
T KOG1098|consen 111 ADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFRS 161 (780)
T ss_pred CcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccccC
Confidence 68887543211 1111 1245677778899999977655533
No 329
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.31 E-value=1.5 Score=41.15 Aligned_cols=96 Identities=16% Similarity=0.221 Sum_probs=56.7
Q ss_pred CCCCCeEEEECCCC-chhHHHHHHc-CCeEEEEcC---ChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEE
Q 019123 158 PFEGLNIVDVGCGG-GILSEPLARM-GATVTGIDA---VEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVI 232 (346)
Q Consensus 158 ~~~~~~vLDiG~G~-G~~~~~l~~~-~~~v~giD~---s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~ 232 (346)
..++.+||=+|+|. |.++..++.. |++|++++. ++.-++.+++.-.. .+.....+..+ ....+.+|+|+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~-----~v~~~~~~~~~-~~~~~~~d~vi 243 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGAT-----YVNSSKTPVAE-VKLVGEFDLII 243 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE-----EecCCccchhh-hhhcCCCCEEE
Confidence 34677899888763 4555555554 779999986 67777766543111 01111111111 01124588887
Q ss_pred ecchhcccCCHHHHHHHHHHhcccCceEEEEec
Q 019123 233 ASEVIEHVADPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 233 ~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
-.-. . ...+.++.++|++||.+++...
T Consensus 244 d~~g-----~-~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 244 EATG-----V-PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred ECcC-----C-HHHHHHHHHHccCCcEEEEEec
Confidence 5432 1 2467888999999999887543
No 330
>PRK08265 short chain dehydrogenase; Provisional
Probab=90.26 E-value=3.2 Score=37.00 Aligned_cols=73 Identities=14% Similarity=0.097 Sum_probs=48.0
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-----c-----cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-----E-----EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~~~ 226 (346)
.++++|=.|++.| .++..+++.|++|+.+|.+++.++...+... .++.++.+|+.+.. + .-+
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLG-----ERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----CeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4567887876554 3556667779999999998765554443331 45778888886542 0 124
Q ss_pred ceeEEEecchh
Q 019123 227 KFDAVIASEVI 237 (346)
Q Consensus 227 ~fDlv~~~~~l 237 (346)
..|+++.+...
T Consensus 80 ~id~lv~~ag~ 90 (261)
T PRK08265 80 RVDILVNLACT 90 (261)
T ss_pred CCCEEEECCCC
Confidence 68988876544
No 331
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.17 E-value=2.3 Score=38.82 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=62.6
Q ss_pred CCCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc----------ccC
Q 019123 159 FEGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV----------EEQ 225 (346)
Q Consensus 159 ~~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~----------~~~ 225 (346)
..+..||==|+|.| .++..++++|+.+...|++.+..+...+.+.+.| ++..+.+|+.+.. .+-
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 45778999999888 5788889999999999999988888777776653 6888888986542 134
Q ss_pred CceeEEEecchhcccC
Q 019123 226 RKFDAVIASEVIEHVA 241 (346)
Q Consensus 226 ~~fDlv~~~~~l~~~~ 241 (346)
+..|+++.+.++.+..
T Consensus 113 G~V~ILVNNAGI~~~~ 128 (300)
T KOG1201|consen 113 GDVDILVNNAGIVTGK 128 (300)
T ss_pred CCceEEEeccccccCC
Confidence 6799999988776543
No 332
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.98 E-value=0.65 Score=43.18 Aligned_cols=67 Identities=13% Similarity=0.080 Sum_probs=50.2
Q ss_pred EEEECCCCchhHHHHHHcCCe-EEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc-cCCceeEEEecchh
Q 019123 164 IVDVGCGGGILSEPLARMGAT-VTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE-EQRKFDAVIASEVI 237 (346)
Q Consensus 164 vLDiG~G~G~~~~~l~~~~~~-v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~fDlv~~~~~l 237 (346)
|+|+-||.|.+...+...|.+ +.++|+++.+++..+.+... .++.+|+.++.. .-..+|+++...-.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-------~~~~~Di~~~~~~~~~~~dvl~gg~PC 69 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-------KVPFGDITKISPSDIPDFDILLGGFPC 69 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-------CCCccChhhhhhhhCCCcCEEEecCCC
Confidence 689999999999999988986 46799999999988887642 344567766642 12258999875533
No 333
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=89.86 E-value=1.7 Score=40.28 Aligned_cols=92 Identities=21% Similarity=0.268 Sum_probs=57.7
Q ss_pred CCCeEEEECCCC-chhHHHHHHc-CC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcC---cccccccCCceeEEEe
Q 019123 160 EGLNIVDVGCGG-GILSEPLARM-GA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTT---AEKLVEEQRKFDAVIA 233 (346)
Q Consensus 160 ~~~~vLDiG~G~-G~~~~~l~~~-~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d---~~~l~~~~~~fDlv~~ 233 (346)
++.+||-.|||. |..+..++.. |. .+++++.++...+.+++.. . . .++... ...+......+|+|+.
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g----~-~--~vi~~~~~~~~~~~~~~~~vd~vld 237 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMG----A-D--ETVNLARDPLAAYAADKGDFDVVFE 237 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcC----C-C--EEEcCCchhhhhhhccCCCccEEEE
Confidence 678888888764 5566666654 77 7999999988887665431 1 0 111111 1111111235899885
Q ss_pred cchhcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 234 SEVIEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 234 ~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
.... ...+..+.+.|+++|.++...
T Consensus 238 ~~g~------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 238 ASGA------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred CCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence 4321 245788899999999998754
No 334
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=89.84 E-value=1.1 Score=42.77 Aligned_cols=101 Identities=21% Similarity=0.200 Sum_probs=55.0
Q ss_pred CCCCeEEEECCC-CchhHHHHHH-cCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecch
Q 019123 159 FEGLNIVDVGCG-GGILSEPLAR-MGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEV 236 (346)
Q Consensus 159 ~~~~~vLDiG~G-~G~~~~~l~~-~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~ 236 (346)
.++.+|+=+|+| .|..+...+. .|++|+++|.+++.++.+...+.. .+.....+.+.+...-..+|+|+..-.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~-----~v~~~~~~~~~l~~~l~~aDvVI~a~~ 239 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG-----RIHTRYSNAYEIEDAVKRADLLIGAVL 239 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc-----eeEeccCCHHHHHHHHccCCEEEEccc
Confidence 356779999887 3444444333 488999999998776665544321 111111222222211235899997542
Q ss_pred hcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 237 IEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 237 l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
+.....+.-+-+++.+.+|||++++-..
T Consensus 240 ~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 240 IPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 2111112212355666789988777544
No 335
>PRK05867 short chain dehydrogenase; Provisional
Probab=89.60 E-value=4.4 Score=35.84 Aligned_cols=77 Identities=13% Similarity=0.114 Sum_probs=53.6
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~~ 226 (346)
.++++|=.|++.| .++..|+++|++|++++.+++.++...+.+...+ .++.++.+|+.+... .-+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 5678998887666 4666777789999999999877776655554333 457788888765320 124
Q ss_pred ceeEEEecchhc
Q 019123 227 KFDAVIASEVIE 238 (346)
Q Consensus 227 ~fDlv~~~~~l~ 238 (346)
..|+++.+..+.
T Consensus 86 ~id~lv~~ag~~ 97 (253)
T PRK05867 86 GIDIAVCNAGII 97 (253)
T ss_pred CCCEEEECCCCC
Confidence 789998766543
No 336
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=89.42 E-value=2.1 Score=38.30 Aligned_cols=89 Identities=17% Similarity=0.152 Sum_probs=61.0
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecch
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEV 236 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~ 236 (346)
...+++...|+|...|.|+..|.+++..|+++|-.+ |....-. . +.|+.+..|...+.......|-.+|..
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~-ma~sL~d----t---g~v~h~r~DGfk~~P~r~~idWmVCDm- 278 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGP-MAQSLMD----T---GQVTHLREDGFKFRPTRSNIDWMVCDM- 278 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhcceEEEEeccch-hhhhhhc----c---cceeeeeccCcccccCCCCCceEEeeh-
Confidence 345789999999999999999999999999999643 4333221 1 457777777766543355688877753
Q ss_pred hcccCCHHHHHHHHHHhcccC
Q 019123 237 IEHVADPAEFCKSLSALTVSE 257 (346)
Q Consensus 237 l~~~~~~~~~l~~~~r~Lkpg 257 (346)
+..|..+-..+...|..|
T Consensus 279 ---VEkP~rv~~li~~Wl~nG 296 (358)
T COG2933 279 ---VEKPARVAALIAKWLVNG 296 (358)
T ss_pred ---hcCcHHHHHHHHHHHHcc
Confidence 345555555555555433
No 337
>PRK12939 short chain dehydrogenase; Provisional
Probab=89.17 E-value=3.9 Score=35.82 Aligned_cols=75 Identities=17% Similarity=0.160 Sum_probs=48.0
Q ss_pred CCCeEEEECCCCchhH----HHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc-----c-----C
Q 019123 160 EGLNIVDVGCGGGILS----EPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE-----E-----Q 225 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~----~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~-----~-----~ 225 (346)
.+++||=.|+ +|.++ ..++++|++|++++.+++.+....+.+...+ .++.++.+|+.+... . -
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4577886665 44444 4455668999999988876665555443322 468888999865421 1 1
Q ss_pred CceeEEEecchh
Q 019123 226 RKFDAVIASEVI 237 (346)
Q Consensus 226 ~~fDlv~~~~~l 237 (346)
+.+|+|+.....
T Consensus 83 ~~id~vi~~ag~ 94 (250)
T PRK12939 83 GGLDGLVNNAGI 94 (250)
T ss_pred CCCCEEEECCCC
Confidence 468988876544
No 338
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=89.16 E-value=3.9 Score=38.05 Aligned_cols=92 Identities=17% Similarity=0.075 Sum_probs=58.1
Q ss_pred CCCCCCeEEEECCC-CchhHHHHHHc-CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEec
Q 019123 157 RPFEGLNIVDVGCG-GGILSEPLARM-GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIAS 234 (346)
Q Consensus 157 ~~~~~~~vLDiG~G-~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~ 234 (346)
...++.+||=.|+| .|..+..++.. |.+|++++.+++-++.+++.-.. .++ +..+. ..+.+|+++..
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~-------~vi--~~~~~--~~~~~d~~i~~ 230 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAA-------SAG--GAYDT--PPEPLDAAILF 230 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCc-------eec--ccccc--CcccceEEEEC
Confidence 45578899998864 33444455543 77999999999888877664221 111 11111 12357876543
Q ss_pred chhcccCCHHHHHHHHHHhcccCceEEEEec
Q 019123 235 EVIEHVADPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 235 ~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
... ...+....+.|++||.+++.-.
T Consensus 231 ~~~------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 231 APA------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred CCc------HHHHHHHHHhhCCCcEEEEEec
Confidence 322 2468888899999999988654
No 339
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.89 E-value=19 Score=33.18 Aligned_cols=173 Identities=14% Similarity=0.071 Sum_probs=88.9
Q ss_pred hHHHHHHHHHhhhhccCCCCCCCCCCCeEEEECCCCchhHHHHHHcC--C--eEEEEcCChHHHHHHHHhhccCCC----
Q 019123 136 TRLAFIRSTLCRHFRKDPYSARPFEGLNIVDVGCGGGILSEPLARMG--A--TVTGIDAVEKNIKIARLHADLDPE---- 207 (346)
Q Consensus 136 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~--~v~giD~s~~~l~~a~~~~~~~~~---- 207 (346)
.|..-+.+.+.+.+.. ......|+.+|||.-.+.+.|...+ . .++=+|.++........ ....++
T Consensus 69 ~R~~aI~~~v~~Fl~~------~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~i-k~~~~~s~~l 141 (335)
T KOG2918|consen 69 ARTMAIRHAVRAFLEQ------TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISI-KRKPELSSIL 141 (335)
T ss_pred HHHHHHHHHHHHHHHh------cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhh-cccCchhhhh
Confidence 4455566666655532 2355789999999999999998876 2 46666665544333311 111110
Q ss_pred -----------------CCceEEEEcCcccccc----------cCCceeEEEecchhcccCCH--HHHHHHHHHhcccCc
Q 019123 208 -----------------TSTIEYCCTTAEKLVE----------EQRKFDAVIASEVIEHVADP--AEFCKSLSALTVSEG 258 (346)
Q Consensus 208 -----------------~~~v~~~~~d~~~l~~----------~~~~fDlv~~~~~l~~~~~~--~~~l~~~~r~LkpgG 258 (346)
.++-..+.+|..++.. ..+-.-++++-.+|-+++.- ...++.+...-..++
T Consensus 142 ~~~~~eD~~~~s~~~l~s~~Y~~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~ 221 (335)
T KOG2918|consen 142 LGLHDEDVVDLSGTDLHSGRYHLIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAH 221 (335)
T ss_pred hccccccccccCcceeccCceeeeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCccc
Confidence 1233344444433210 01111222233344455422 246666666555444
Q ss_pred eEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHHHHHHCCCcEEEEecc
Q 019123 259 ATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVLILQRASIDVKEMAGF 319 (346)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~ 319 (346)
.+....++ ....+...+....- .+ ...-+....+.+.+..+.-+.++||+-+...++
T Consensus 222 fv~YEQi~-~~D~Fg~vM~~nlk-~r--~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 222 FVNYEQIN-PNDRFGKVMLANLK-RR--GCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred EEEEeccC-CCChHHHHHHHHHH-hc--CCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 44443333 33333333222111 11 111223457889999999999999999876443
No 340
>PRK08267 short chain dehydrogenase; Provisional
Probab=88.88 E-value=4.2 Score=36.09 Aligned_cols=72 Identities=14% Similarity=0.075 Sum_probs=48.9
Q ss_pred eEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-----c----c--CCce
Q 019123 163 NIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-----E----E--QRKF 228 (346)
Q Consensus 163 ~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~----~--~~~f 228 (346)
++|=.|++.| .++..+++.|.+|++++.+++.++....... ..++.++.+|+.+.. . . .+.+
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~i 78 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG----AGNAWTGALDVTDRAAWDAALADFAAATGGRL 78 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 5777776544 3555666779999999999887776655443 146888899986642 0 1 4578
Q ss_pred eEEEecchhc
Q 019123 229 DAVIASEVIE 238 (346)
Q Consensus 229 Dlv~~~~~l~ 238 (346)
|+|+.+.+..
T Consensus 79 d~vi~~ag~~ 88 (260)
T PRK08267 79 DVLFNNAGIL 88 (260)
T ss_pred CEEEECCCCC
Confidence 9998766543
No 341
>PRK06701 short chain dehydrogenase; Provisional
Probab=88.85 E-value=3.3 Score=37.76 Aligned_cols=103 Identities=11% Similarity=0.080 Sum_probs=60.4
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChH-HHHHHHHhhccCCCCCceEEEEcCcccccc----------cC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEK-NIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQ 225 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~-~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~ 225 (346)
.+++||-.|++.| .++..++++|.+|+.++.+.. .++.....+...+ .++.++.+|+.+... .-
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 5678888887655 356667778999999988753 3333333333222 467788888865321 11
Q ss_pred CceeEEEecchhcc----cC--C--------------HHHHHHHHHHhcccCceEEEEe
Q 019123 226 RKFDAVIASEVIEH----VA--D--------------PAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 226 ~~fDlv~~~~~l~~----~~--~--------------~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
+.+|+|+.+.+... +. + +-.+++.+.+.++++|.+++..
T Consensus 123 ~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 123 GRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred CCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 46798886554321 11 1 1134555666667777766644
No 342
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=88.44 E-value=0.92 Score=43.24 Aligned_cols=58 Identities=10% Similarity=0.153 Sum_probs=49.6
Q ss_pred CceEEEEcCccccc--ccCCceeEEEecchhcccCC--HHHHHHHHHHhcccCceEEEEecC
Q 019123 209 STIEYCCTTAEKLV--EEQRKFDAVIASEVIEHVAD--PAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 209 ~~v~~~~~d~~~l~--~~~~~fDlv~~~~~l~~~~~--~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
+++.++.+++.+.. .+++++|.++......++++ ..+.++++.+.++|||.+++-...
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~ 336 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAA 336 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCC
Confidence 78999999987764 36889999999999999976 347899999999999999987654
No 343
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.43 E-value=2.3 Score=39.68 Aligned_cols=99 Identities=16% Similarity=0.094 Sum_probs=61.3
Q ss_pred CeEEEECCCC--chhHHHHHHcCCeEEEEcCChHHHHHHHHhhcc-------CCC-----CCceEEEEcCcccccccCCc
Q 019123 162 LNIVDVGCGG--GILSEPLARMGATVTGIDAVEKNIKIARLHADL-------DPE-----TSTIEYCCTTAEKLVEEQRK 227 (346)
Q Consensus 162 ~~vLDiG~G~--G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~-------~~~-----~~~v~~~~~d~~~l~~~~~~ 227 (346)
.+|-=||+|+ ..++..++..|.+|+.+|.+++.++.++..+.. .++ ..++.+.. +.++. -..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~a---v~~ 83 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEAC---VAD 83 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHHH---hcC
Confidence 5788999994 367778888899999999999888766553321 111 11223221 22111 134
Q ss_pred eeEEEecchhcccCCHHHHHHHHHHhcccCceEEEEec
Q 019123 228 FDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 228 fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
.|+|+-+ +.+.+.-...++.++.++++|+.+|...+.
T Consensus 84 aDlViEa-vpE~l~vK~~lf~~l~~~~~~~aIlaSnTS 120 (321)
T PRK07066 84 ADFIQES-APEREALKLELHERISRAAKPDAIIASSTS 120 (321)
T ss_pred CCEEEEC-CcCCHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 5777653 233332345788999999999885555444
No 344
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=88.36 E-value=2.7 Score=40.58 Aligned_cols=88 Identities=15% Similarity=0.039 Sum_probs=55.7
Q ss_pred CCCCeEEEECCCC-chhHHHH-HHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecch
Q 019123 159 FEGLNIVDVGCGG-GILSEPL-ARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEV 236 (346)
Q Consensus 159 ~~~~~vLDiG~G~-G~~~~~l-~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~ 236 (346)
.++.+|+=+|+|. |.....+ ...|++|+++|.++.-+..++.. + +... +.++. . ..+|+|+..-.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~----G----~~~~--~~~e~-v--~~aDVVI~atG 266 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME----G----YEVM--TMEEA-V--KEGDIFVTTTG 266 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc----C----CEEc--cHHHH-H--cCCCEEEECCC
Confidence 4788999999995 4333323 33488999999998877776542 1 1111 22221 1 24799986422
Q ss_pred hcccCCHHHHHHH-HHHhcccCceEEEEec
Q 019123 237 IEHVADPAEFCKS-LSALTVSEGATVISTI 265 (346)
Q Consensus 237 l~~~~~~~~~l~~-~~r~LkpgG~~~~~~~ 265 (346)
. ...+.. ..+.+|+||+++....
T Consensus 267 -----~-~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 267 -----N-KDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred -----C-HHHHHHHHHhcCCCCcEEEEeCC
Confidence 2 345554 4889999999977653
No 345
>PRK07576 short chain dehydrogenase; Provisional
Probab=88.35 E-value=5.3 Score=35.69 Aligned_cols=74 Identities=19% Similarity=0.207 Sum_probs=46.8
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-----c-----cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-----E-----EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~~~ 226 (346)
++++||-.|++.| .++..++..|++|++++.+++.+....+.....+ .++.++.+|+.+.. + ..+
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEFG 85 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 5678888875433 2445566679999999998876655544433322 35677888876532 0 124
Q ss_pred ceeEEEecc
Q 019123 227 KFDAVIASE 235 (346)
Q Consensus 227 ~fDlv~~~~ 235 (346)
.+|+++.+.
T Consensus 86 ~iD~vi~~a 94 (264)
T PRK07576 86 PIDVLVSGA 94 (264)
T ss_pred CCCEEEECC
Confidence 689988654
No 346
>PRK08324 short chain dehydrogenase; Validated
Probab=88.27 E-value=6.1 Score=40.88 Aligned_cols=102 Identities=17% Similarity=0.093 Sum_probs=63.1
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-----c-----cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-----E-----EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~~~ 226 (346)
.+++||=.|++.| .++..++++|.+|+++|.++..++.+...+... .++.++.+|+.+.. . .-+
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4567887775433 244455667999999999987776665544322 35778888875532 1 124
Q ss_pred ceeEEEecchhcccCC-------------------HHHHHHHHHHhccc---CceEEEEe
Q 019123 227 KFDAVIASEVIEHVAD-------------------PAEFCKSLSALTVS---EGATVIST 264 (346)
Q Consensus 227 ~fDlv~~~~~l~~~~~-------------------~~~~l~~~~r~Lkp---gG~~~~~~ 264 (346)
.+|+|+.+.++..... ...+++.+.+.+++ ||.|++..
T Consensus 498 ~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 498 GVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 6899987765432111 22356666777766 57666654
No 347
>PRK07109 short chain dehydrogenase; Provisional
Probab=88.13 E-value=8.4 Score=35.97 Aligned_cols=76 Identities=14% Similarity=0.143 Sum_probs=51.4
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~~ 226 (346)
.++.||=.|++.| .++..+++.|++|+.++.+++.++...+.+...+ .++.++.+|+.+... .-+
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 4567888876555 3455667779999999999887776655554333 467788888765420 124
Q ss_pred ceeEEEecchh
Q 019123 227 KFDAVIASEVI 237 (346)
Q Consensus 227 ~fDlv~~~~~l 237 (346)
.+|+++.+...
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 68999876654
No 348
>PRK09072 short chain dehydrogenase; Provisional
Probab=88.07 E-value=4.8 Score=35.82 Aligned_cols=76 Identities=14% Similarity=0.209 Sum_probs=51.3
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc---------cCCc
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE---------EQRK 227 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~---------~~~~ 227 (346)
++.+||=.|++.| .++..++++|++|++++.+++.++.....+. . ..++.++.+|+.+... ..+.
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLP-Y--PGRHRWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHh-c--CCceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence 4567888876654 3566677779999999999877766655442 1 2468888888866421 1246
Q ss_pred eeEEEecchhc
Q 019123 228 FDAVIASEVIE 238 (346)
Q Consensus 228 fDlv~~~~~l~ 238 (346)
.|+++...+..
T Consensus 81 id~lv~~ag~~ 91 (263)
T PRK09072 81 INVLINNAGVN 91 (263)
T ss_pred CCEEEECCCCC
Confidence 79998876553
No 349
>PRK06914 short chain dehydrogenase; Provisional
Probab=87.93 E-value=6.3 Score=35.37 Aligned_cols=77 Identities=13% Similarity=0.033 Sum_probs=48.4
Q ss_pred CCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc---------cCCce
Q 019123 161 GLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE---------EQRKF 228 (346)
Q Consensus 161 ~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~---------~~~~f 228 (346)
+..+|-.|++.| .++..++++|++|++++-+++.++.........+...++.++.+|+.+... .-+..
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~i 82 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGRI 82 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCCe
Confidence 346777776444 344556677999999998877666554444333323468888888866321 12457
Q ss_pred eEEEecchh
Q 019123 229 DAVIASEVI 237 (346)
Q Consensus 229 Dlv~~~~~l 237 (346)
|+|+.....
T Consensus 83 d~vv~~ag~ 91 (280)
T PRK06914 83 DLLVNNAGY 91 (280)
T ss_pred eEEEECCcc
Confidence 888876543
No 350
>PRK07806 short chain dehydrogenase; Provisional
Probab=87.92 E-value=6.8 Score=34.35 Aligned_cols=102 Identities=12% Similarity=0.044 Sum_probs=57.0
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCCh-HHHHHHHHhhccCCCCCceEEEEcCcccccc-----c-----C
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVE-KNIKIARLHADLDPETSTIEYCCTTAEKLVE-----E-----Q 225 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~-~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~-----~-----~ 225 (346)
.+++||-.|++.| .++..++..|.+|++++.+. ..++.....+...+ .++.++.+|+.+... . -
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 4568888876433 24445556788999987754 23333333232222 457788888865421 0 1
Q ss_pred CceeEEEecchhcccC-------------CHHHHHHHHHHhcccCceEEEE
Q 019123 226 RKFDAVIASEVIEHVA-------------DPAEFCKSLSALTVSEGATVIS 263 (346)
Q Consensus 226 ~~fDlv~~~~~l~~~~-------------~~~~~l~~~~r~LkpgG~~~~~ 263 (346)
+.+|+|+.+....... -...+++.+...++.+|.+++.
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 3578877654332110 1235667777766666666554
No 351
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=87.92 E-value=1.8 Score=40.72 Aligned_cols=41 Identities=32% Similarity=0.387 Sum_probs=33.5
Q ss_pred CCCeEEEECCCCchhHHHHHHc-CCeEEEEcCChHHHHHHHH
Q 019123 160 EGLNIVDVGCGGGILSEPLARM-GATVTGIDAVEKNIKIARL 200 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~ 200 (346)
+-..|+|+|.|.|.++..+.-+ |..|.+||-|....+.+++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 4468999999999999998755 7799999999766655543
No 352
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=87.54 E-value=11 Score=33.30 Aligned_cols=76 Identities=16% Similarity=0.111 Sum_probs=50.1
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~~ 226 (346)
.+++||=.|++.| .++..++++|++|++++-+++.++.....+...+ .++.++.+|+.+... .-+
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAEHG 87 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 5678888876544 3445566679999999999877666555444332 457788888765320 124
Q ss_pred ceeEEEecchh
Q 019123 227 KFDAVIASEVI 237 (346)
Q Consensus 227 ~fDlv~~~~~l 237 (346)
.+|.++.+...
T Consensus 88 ~id~vi~~ag~ 98 (256)
T PRK06124 88 RLDILVNNVGA 98 (256)
T ss_pred CCCEEEECCCC
Confidence 67888876554
No 353
>PRK06181 short chain dehydrogenase; Provisional
Probab=87.37 E-value=5.1 Score=35.56 Aligned_cols=73 Identities=14% Similarity=0.049 Sum_probs=45.4
Q ss_pred CeEEEECCCCchhHH----HHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cCCc
Q 019123 162 LNIVDVGCGGGILSE----PLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQRK 227 (346)
Q Consensus 162 ~~vLDiG~G~G~~~~----~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~~~ 227 (346)
.+||=.|+ +|.++. .+++.|++|++++.++...+...+.+...+ .++.++.+|+.+... .-+.
T Consensus 2 ~~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06181 2 KVVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFGG 78 (263)
T ss_pred CEEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 35675554 444444 445668899999998776665544443332 467788888865421 1135
Q ss_pred eeEEEecchh
Q 019123 228 FDAVIASEVI 237 (346)
Q Consensus 228 fDlv~~~~~l 237 (346)
.|+|+...+.
T Consensus 79 id~vi~~ag~ 88 (263)
T PRK06181 79 IDILVNNAGI 88 (263)
T ss_pred CCEEEECCCc
Confidence 7998876544
No 354
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=87.28 E-value=4.5 Score=37.81 Aligned_cols=93 Identities=12% Similarity=0.114 Sum_probs=57.0
Q ss_pred CCCCCeEEEECCCC-chhHHHHHHc--C-CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEe
Q 019123 158 PFEGLNIVDVGCGG-GILSEPLARM--G-ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIA 233 (346)
Q Consensus 158 ~~~~~~vLDiG~G~-G~~~~~l~~~--~-~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~ 233 (346)
..++.+||=+|||. |.++..++.+ | .+|+++|.++.-++.++. +. .. +.. + ++. ....+|+|+-
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~------~~-~~~-~--~~~-~~~g~d~viD 228 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-AD------ET-YLI-D--DIP-EDLAVDHAFE 228 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cC------ce-eeh-h--hhh-hccCCcEEEE
Confidence 34678999999763 3444555553 3 589999999988887764 21 11 111 1 111 1224788874
Q ss_pred cchhcccCCHHHHHHHHHHhcccCceEEEEec
Q 019123 234 SEVIEHVADPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 234 ~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
.-.- ......+..+.++|++||.+++.-.
T Consensus 229 ~~G~---~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 229 CVGG---RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred CCCC---CccHHHHHHHHHhCcCCcEEEEEee
Confidence 3220 0124578889999999999987654
No 355
>PRK09242 tropinone reductase; Provisional
Probab=87.28 E-value=10 Score=33.43 Aligned_cols=78 Identities=10% Similarity=0.088 Sum_probs=51.9
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc----------ccCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV----------EEQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~----------~~~~ 226 (346)
.++++|=.|++.| .++..+++.|++|+.++.+.+.++.....+.......++.++.+|+.+.. ..-+
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 87 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD 87 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4678888887655 35666677799999999988777665554433211246778888886531 1124
Q ss_pred ceeEEEecchh
Q 019123 227 KFDAVIASEVI 237 (346)
Q Consensus 227 ~fDlv~~~~~l 237 (346)
.+|+|+.....
T Consensus 88 ~id~li~~ag~ 98 (257)
T PRK09242 88 GLHILVNNAGG 98 (257)
T ss_pred CCCEEEECCCC
Confidence 68998877654
No 356
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=86.86 E-value=8.9 Score=34.15 Aligned_cols=76 Identities=14% Similarity=0.048 Sum_probs=53.1
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-----c-----cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-----E-----EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~~~ 226 (346)
.++++|-.|++.| .++..|+++|++|+.++.+++.++.........+ .++.++.+|+.+.. . .-+
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 5568888887765 4666777889999999998877766655554332 46788889886542 0 124
Q ss_pred ceeEEEecchh
Q 019123 227 KFDAVIASEVI 237 (346)
Q Consensus 227 ~fDlv~~~~~l 237 (346)
.+|+++.+.++
T Consensus 87 ~id~li~~ag~ 97 (265)
T PRK07097 87 VIDILVNNAGI 97 (265)
T ss_pred CCCEEEECCCC
Confidence 68999987655
No 357
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=86.75 E-value=8 Score=33.61 Aligned_cols=98 Identities=18% Similarity=0.220 Sum_probs=60.7
Q ss_pred CCCeEEEECCCCch--hHHHHH--Hc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCc-ccccccCCceeEEE
Q 019123 160 EGLNIVDVGCGGGI--LSEPLA--RM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTA-EKLVEEQRKFDAVI 232 (346)
Q Consensus 160 ~~~~vLDiG~G~G~--~~~~l~--~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~-~~l~~~~~~fDlv~ 232 (346)
..+.|+++.|+.|. .++.|+ .+ |.++++|-..+..+...++.+...++...++|+.++. +++...-..+|+++
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~v 120 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVV 120 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEE
Confidence 55688999666442 344443 22 7799999999888888888887777656679998884 43322223578887
Q ss_pred ecchhcccCCHHHHHHHHHHhc--ccCceEEEE
Q 019123 233 ASEVIEHVADPAEFCKSLSALT--VSEGATVIS 263 (346)
Q Consensus 233 ~~~~l~~~~~~~~~l~~~~r~L--kpgG~~~~~ 263 (346)
+..- .++++.++.+++ .|-|.+++.
T Consensus 121 VDc~------~~d~~~~vl~~~~~~~~GaVVV~ 147 (218)
T PF07279_consen 121 VDCK------REDFAARVLRAAKLSPRGAVVVC 147 (218)
T ss_pred EeCC------chhHHHHHHHHhccCCCceEEEE
Confidence 6542 233333333343 345655554
No 358
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.39 E-value=4.4 Score=36.83 Aligned_cols=98 Identities=18% Similarity=0.180 Sum_probs=59.5
Q ss_pred eEEEECCC--CchhHHHHHHcCCeEEEEcCChHHHHHHHHhh-------ccCC-CC--------CceEEEEcCccccccc
Q 019123 163 NIVDVGCG--GGILSEPLARMGATVTGIDAVEKNIKIARLHA-------DLDP-ET--------STIEYCCTTAEKLVEE 224 (346)
Q Consensus 163 ~vLDiG~G--~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~-------~~~~-~~--------~~v~~~~~d~~~l~~~ 224 (346)
+|.=||+| -+.++..++..|.+|+++|++++.++.+..++ ...+ +. .++.+ ..|...
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~---- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD---- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH----
Confidence 57778888 35677788888999999999999887654322 1111 10 12222 223222
Q ss_pred CCceeEEEecchhcccCCHHHHHHHHHHhcccCceEEEEecC
Q 019123 225 QRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 225 ~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
-...|+|+..- .....-...++.++.+.++|+.++.....+
T Consensus 80 ~~~aDlVi~av-~e~~~~k~~~~~~l~~~~~~~~il~s~ts~ 120 (282)
T PRK05808 80 LKDADLVIEAA-TENMDLKKKIFAQLDEIAKPEAILATNTSS 120 (282)
T ss_pred hccCCeeeecc-cccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 13468887642 111112347899999999998877544444
No 359
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=86.25 E-value=7.9 Score=36.34 Aligned_cols=99 Identities=21% Similarity=0.260 Sum_probs=57.9
Q ss_pred CCCCCCeEEEECCCC-chhHHHHHHc-CC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccc-cc--ccCCceeE
Q 019123 157 RPFEGLNIVDVGCGG-GILSEPLARM-GA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEK-LV--EEQRKFDA 230 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~-G~~~~~l~~~-~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-l~--~~~~~fDl 230 (346)
...++.+||=.|+|. |..+..++.. |. .|+++|.++..++.+++.-. . .-+.....+..+ +. .....+|+
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga-~---~~i~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGA-T---HTVNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC-c---eEEcCCCcCHHHHHHHHhCCCCCCE
Confidence 445788999888742 3444555554 77 49999999988888865311 0 001111111111 11 12235898
Q ss_pred EEecchhcccCCHHHHHHHHHHhcccCceEEEEec
Q 019123 231 VIASEVIEHVADPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 231 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
|+-.- .. ...+..+.+.|++||.+++.-.
T Consensus 249 vid~~-----g~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 249 VIDAV-----GR-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred EEECC-----CC-HHHHHHHHHHhccCCEEEEECC
Confidence 87432 12 2467778889999999887643
No 360
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=86.23 E-value=4.7 Score=35.14 Aligned_cols=63 Identities=10% Similarity=0.179 Sum_probs=44.8
Q ss_pred CCCCCCCeEEEECCCCchhHHHHHHcCC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccc
Q 019123 156 ARPFEGLNIVDVGCGGGILSEPLARMGA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEK 220 (346)
Q Consensus 156 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 220 (346)
++...+.-|.+||.|.|.++..+++.+. +...++++...+.-.+......+ .+..++.+|+..
T Consensus 46 A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR 109 (326)
T KOG0821|consen 46 AGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLR 109 (326)
T ss_pred ccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cceEEeccccce
Confidence 4556778999999999999999999876 67778877765554444333222 466777777643
No 361
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=86.08 E-value=7.2 Score=35.89 Aligned_cols=94 Identities=21% Similarity=0.196 Sum_probs=58.1
Q ss_pred CCCCCeEEEECCC-CchhHHHHHHc-CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-ccCCceeEEEec
Q 019123 158 PFEGLNIVDVGCG-GGILSEPLARM-GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-EEQRKFDAVIAS 234 (346)
Q Consensus 158 ~~~~~~vLDiG~G-~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-~~~~~fDlv~~~ 234 (346)
..++.+||-+|+| .|..+..++.. |.+|++++.+++.++.+++.. .. .++...-.... ...+.+|+++..
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g-~~------~~~~~~~~~~~~~~~~~~d~vi~~ 232 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLG-AD------EVVDSGAELDEQAAAGGADVILVT 232 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhC-Cc------EEeccCCcchHHhccCCCCEEEEC
Confidence 4567788889886 66666666555 889999999998888775421 10 11111100000 012358888753
Q ss_pred chhcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 235 EVIEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 235 ~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
.. . ...+..+.+.|+++|.++...
T Consensus 233 ~~-----~-~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 233 VV-----S-GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred CC-----c-HHHHHHHHHhcccCCEEEEEC
Confidence 21 1 246778889999999888764
No 362
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=86.07 E-value=7.1 Score=35.96 Aligned_cols=95 Identities=20% Similarity=0.256 Sum_probs=58.9
Q ss_pred CCCCCCeEEEECCC-CchhHHHHHHc-CCe-EEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccc----cccCCcee
Q 019123 157 RPFEGLNIVDVGCG-GGILSEPLARM-GAT-VTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKL----VEEQRKFD 229 (346)
Q Consensus 157 ~~~~~~~vLDiG~G-~G~~~~~l~~~-~~~-v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l----~~~~~~fD 229 (346)
...++.+||-+|+| .|..+..++.. |.+ |++++.+++..+.+++.. . . .++..+-... ......+|
T Consensus 156 ~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g----~-~--~~~~~~~~~~~~~~~~~~~~vd 228 (334)
T cd08234 156 GIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLG----A-T--ETVDPSREDPEAQKEDNPYGFD 228 (334)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhC----C-e--EEecCCCCCHHHHHHhcCCCCc
Confidence 44577899999865 24555555554 666 899999998888775432 1 0 1222111111 11345689
Q ss_pred EEEecchhcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 230 AVIASEVIEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 230 lv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
+++.... ....+..+.++|+++|.++...
T Consensus 229 ~v~~~~~------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 229 VVIEATG------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred EEEECCC------ChHHHHHHHHHHhcCCEEEEEe
Confidence 9985421 1357788889999999988754
No 363
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=86.07 E-value=4.7 Score=37.83 Aligned_cols=98 Identities=14% Similarity=0.183 Sum_probs=60.5
Q ss_pred CCCCCCeEEEECC--CCchhHHHHHHc-CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEc-Cccc-cc-ccCCceeE
Q 019123 157 RPFEGLNIVDVGC--GGGILSEPLARM-GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCT-TAEK-LV-EEQRKFDA 230 (346)
Q Consensus 157 ~~~~~~~vLDiG~--G~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~-d~~~-l~-~~~~~fDl 230 (346)
...++.+||=.|+ |.|..+..++.. |.+|++++.+++.++.+++.+... .-+..... +..+ +. ...+.+|+
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~---~vi~~~~~~~~~~~i~~~~~~gvD~ 231 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFD---EAFNYKEEPDLDAALKRYFPEGIDI 231 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCC---EEEECCCcccHHHHHHHHCCCCcEE
Confidence 3457789998887 467777777765 889999999988877765333211 00111111 1111 11 11235898
Q ss_pred EEecchhcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 231 VIASEVIEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 231 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
|+-.-. ...+..+.++|++||.+++.-
T Consensus 232 v~d~vG-------~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 232 YFDNVG-------GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred EEECCC-------HHHHHHHHHHhccCCEEEEEC
Confidence 874322 246778889999999988754
No 364
>PRK07814 short chain dehydrogenase; Provisional
Probab=86.04 E-value=11 Score=33.51 Aligned_cols=75 Identities=15% Similarity=0.125 Sum_probs=48.9
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~~ 226 (346)
.++++|=.|++.| .++..|+++|++|++++.+++.++.....+...+ .++.++.+|+.+... .-+
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4678888876443 3445566679999999999877665555443322 457788888765431 014
Q ss_pred ceeEEEecch
Q 019123 227 KFDAVIASEV 236 (346)
Q Consensus 227 ~fDlv~~~~~ 236 (346)
.+|+|+....
T Consensus 87 ~id~vi~~Ag 96 (263)
T PRK07814 87 RLDIVVNNVG 96 (263)
T ss_pred CCCEEEECCC
Confidence 6899987554
No 365
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=85.86 E-value=8.3 Score=29.51 Aligned_cols=85 Identities=20% Similarity=0.160 Sum_probs=53.1
Q ss_pred CCCchhHHHHHHc----CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----cCCceeEEEecchhccc
Q 019123 169 CGGGILSEPLARM----GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----EQRKFDAVIASEVIEHV 240 (346)
Q Consensus 169 ~G~G~~~~~l~~~----~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----~~~~fDlv~~~~~l~~~ 240 (346)
||.|.++..+++. +.+|+.+|.+++.++.++... +.++.+|+.+... .-...|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~--------~~~i~gd~~~~~~l~~a~i~~a~~vv~~~----- 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG--------VEVIYGDATDPEVLERAGIEKADAVVILT----- 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT--------SEEEES-TTSHHHHHHTTGGCESEEEEES-----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc--------cccccccchhhhHHhhcCccccCEEEEcc-----
Confidence 5666676666553 458999999999988877643 6688899876531 224677777653
Q ss_pred CCHHH--HHHHHHHhcccCceEEEEecC
Q 019123 241 ADPAE--FCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 241 ~~~~~--~l~~~~r~LkpgG~~~~~~~~ 266 (346)
.+... .+....+-+.|...+++...+
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEEEESS
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 23332 333444556677777766554
No 366
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=85.86 E-value=3.9 Score=37.19 Aligned_cols=84 Identities=24% Similarity=0.168 Sum_probs=52.5
Q ss_pred eEEEECCCC--chhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhccc
Q 019123 163 NIVDVGCGG--GILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEHV 240 (346)
Q Consensus 163 ~vLDiG~G~--G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~~ 240 (346)
+|.=||+|. |.++..+...|.+|+++|.+++.++.+...- . +.....+.+. -...|+|+..--...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g----~---~~~~~~~~~~----~~~aDlVilavp~~~- 69 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERG----L---VDEASTDLSL----LKDCDLVILALPIGL- 69 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC----C---cccccCCHhH----hcCCCEEEEcCCHHH-
Confidence 466678774 5677778788899999999998887776531 1 1111112111 134798887653322
Q ss_pred CCHHHHHHHHHHhcccCceE
Q 019123 241 ADPAEFCKSLSALTVSEGAT 260 (346)
Q Consensus 241 ~~~~~~l~~~~r~LkpgG~~ 260 (346)
...+++++...++++.++
T Consensus 70 --~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 70 --LLPPSEQLIPALPPEAIV 87 (279)
T ss_pred --HHHHHHHHHHhCCCCcEE
Confidence 245677787778776444
No 367
>PRK07326 short chain dehydrogenase; Provisional
Probab=85.62 E-value=13 Score=32.23 Aligned_cols=74 Identities=15% Similarity=0.086 Sum_probs=46.9
Q ss_pred CCCeEEEECCCCchh----HHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-----c-----cC
Q 019123 160 EGLNIVDVGCGGGIL----SEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-----E-----EQ 225 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~----~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~~ 225 (346)
.+..||=+|+ +|.+ +..++++|++|++++.++..+....+.+... ..+.++.+|+.+.. . .-
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAF 80 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3567887774 4544 4445566889999999887666554444322 35778888876532 0 11
Q ss_pred CceeEEEecchh
Q 019123 226 RKFDAVIASEVI 237 (346)
Q Consensus 226 ~~fDlv~~~~~l 237 (346)
+.+|+|+.....
T Consensus 81 ~~~d~vi~~ag~ 92 (237)
T PRK07326 81 GGLDVLIANAGV 92 (237)
T ss_pred CCCCEEEECCCC
Confidence 368988876543
No 368
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=85.58 E-value=8.3 Score=34.04 Aligned_cols=75 Identities=16% Similarity=0.049 Sum_probs=49.5
Q ss_pred CCCeEEEECCCCch----hHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-----c-----cC
Q 019123 160 EGLNIVDVGCGGGI----LSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-----E-----EQ 225 (346)
Q Consensus 160 ~~~~vLDiG~G~G~----~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~~ 225 (346)
.+++||=.|+ +|. ++..+++.|++|++++.++..++.....+...+ .++.++.+|+.+.. + .-
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 5678887775 444 444555669999999999877766555554332 45778888886532 0 12
Q ss_pred CceeEEEecchh
Q 019123 226 RKFDAVIASEVI 237 (346)
Q Consensus 226 ~~fDlv~~~~~l 237 (346)
+..|+++.+...
T Consensus 86 ~~~d~li~~ag~ 97 (255)
T PRK07523 86 GPIDILVNNAGM 97 (255)
T ss_pred CCCCEEEECCCC
Confidence 458988877654
No 369
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=85.43 E-value=9 Score=33.90 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=49.8
Q ss_pred CCCeEEEECCCCchh----HHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cC
Q 019123 160 EGLNIVDVGCGGGIL----SEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQ 225 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~----~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~ 225 (346)
.+++||=.|+ +|.+ +..|+++|++|++++-+.+.++...+.+...+ .++.++.+|+.+... ..
T Consensus 11 ~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 11 SGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 5678888875 4444 44455669999999998877766655544322 467788899876421 12
Q ss_pred CceeEEEecchh
Q 019123 226 RKFDAVIASEVI 237 (346)
Q Consensus 226 ~~fDlv~~~~~l 237 (346)
+.+|.|+...+.
T Consensus 88 ~~id~vi~~ag~ 99 (259)
T PRK08213 88 GHVDILVNNAGA 99 (259)
T ss_pred CCCCEEEECCCC
Confidence 468998876554
No 370
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=85.21 E-value=7.6 Score=36.69 Aligned_cols=96 Identities=19% Similarity=0.146 Sum_probs=57.7
Q ss_pred CCCCCCeEEEECCC-CchhHHHHHHc-CC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccc----cc-ccCCce
Q 019123 157 RPFEGLNIVDVGCG-GGILSEPLARM-GA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEK----LV-EEQRKF 228 (346)
Q Consensus 157 ~~~~~~~vLDiG~G-~G~~~~~l~~~-~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~----l~-~~~~~f 228 (346)
...++.+||=.|+| .|.++..++.. |+ .|+++|.++..++.+++.-. ..++...-++ +. ...+.+
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga-------~~~i~~~~~~~~~~i~~~~~~g~ 260 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA-------TATVNAGDPNAVEQVRELTGGGV 260 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC-------ceEeCCCchhHHHHHHHHhCCCC
Confidence 44567788888875 23445555554 77 69999999998888865321 1111111111 11 112358
Q ss_pred eEEEecchhcccCCHHHHHHHHHHhcccCceEEEEec
Q 019123 229 DAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 229 Dlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
|+|+-.-. -...+..+.+.|++||.+++...
T Consensus 261 d~vid~~G------~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 261 DYAFEMAG------SVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CEEEECCC------ChHHHHHHHHHHhcCCEEEEEcc
Confidence 88874321 13467778889999999887543
No 371
>PRK06500 short chain dehydrogenase; Provisional
Probab=85.15 E-value=14 Score=32.36 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=45.9
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~~ 226 (346)
++++||=.|++.| .++..++++|++|++++.+++.++...+... .++.++.+|..+... ..+
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELG-----ESALVIRADAGDVAAQKALAQALAEAFG 79 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 3557777776544 3555666779999999988766655443331 356777788754320 124
Q ss_pred ceeEEEecchh
Q 019123 227 KFDAVIASEVI 237 (346)
Q Consensus 227 ~fDlv~~~~~l 237 (346)
.+|+|+.....
T Consensus 80 ~id~vi~~ag~ 90 (249)
T PRK06500 80 RLDAVFINAGV 90 (249)
T ss_pred CCCEEEECCCC
Confidence 68988866544
No 372
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=85.09 E-value=5 Score=36.90 Aligned_cols=86 Identities=20% Similarity=0.183 Sum_probs=53.7
Q ss_pred CCCeEEEECCC-CchhHHHHHHc-CCe-EEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecch
Q 019123 160 EGLNIVDVGCG-GGILSEPLARM-GAT-VTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEV 236 (346)
Q Consensus 160 ~~~~vLDiG~G-~G~~~~~l~~~-~~~-v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~ 236 (346)
++.+||=+||| .|.++..++.. |++ |.++|.++..++.+.... + .|..+. ....+|+|+-.-.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~----------~--i~~~~~--~~~g~Dvvid~~G 209 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE----------V--LDPEKD--PRRDYRAIYDASG 209 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc----------c--cChhhc--cCCCCCEEEECCC
Confidence 45678888865 45566666654 775 777899887776654321 1 111111 1345898875422
Q ss_pred hcccCCHHHHHHHHHHhcccCceEEEEec
Q 019123 237 IEHVADPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 237 l~~~~~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
. ...+..+.+.|++||.+++.-.
T Consensus 210 -----~-~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 -----D-PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred -----C-HHHHHHHHHhhhcCcEEEEEee
Confidence 1 3467788899999999987654
No 373
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=84.52 E-value=4.7 Score=41.99 Aligned_cols=101 Identities=18% Similarity=0.114 Sum_probs=66.9
Q ss_pred CeEEEECCCC--chhHHHHHHcCCeEEEEcCChHHHHHHHHhhccC-------C-C--------CCceEEEEcCcccccc
Q 019123 162 LNIVDVGCGG--GILSEPLARMGATVTGIDAVEKNIKIARLHADLD-------P-E--------TSTIEYCCTTAEKLVE 223 (346)
Q Consensus 162 ~~vLDiG~G~--G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~-------~-~--------~~~v~~~~~d~~~l~~ 223 (346)
.+|.-||+|+ ..++..++..|.+|+.+|.+++.++.+..++... + + ..++.+. .|...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~-- 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAGF-- 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh--
Confidence 5799999998 4677788888999999999999998776554221 1 1 0223332 222222
Q ss_pred cCCceeEEEecchhcccCCHHHHHHHHHHhcccCceEEEEecCcc
Q 019123 224 EQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTINRS 268 (346)
Q Consensus 224 ~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~ 268 (346)
...|+|+=. +.+.+.-..++++++.++++|+.+|.-.+.+..
T Consensus 391 --~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~ 432 (715)
T PRK11730 391 --ERVDVVVEA-VVENPKVKAAVLAEVEQKVREDTILASNTSTIS 432 (715)
T ss_pred --cCCCEEEec-ccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Confidence 246777632 334444456899999999999988877665543
No 374
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=84.36 E-value=12 Score=34.65 Aligned_cols=98 Identities=22% Similarity=0.252 Sum_probs=60.0
Q ss_pred CCCCCCeEEEECCCC-chhHHHHHHc-CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCc-cccc--ccCCceeEE
Q 019123 157 RPFEGLNIVDVGCGG-GILSEPLARM-GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTA-EKLV--EEQRKFDAV 231 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~-~~l~--~~~~~fDlv 231 (346)
...++.+||-.|+|. |..+..++.. |.+|+++..+++..+.+++.. .. .-+.....+. +.+. .++..+|++
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g-~~---~v~~~~~~~~~~~l~~~~~~~~vd~v 231 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELG-AD---DTINVGDEDVAARLRELTDGEGADVV 231 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhC-CC---EEecCcccCHHHHHHHHhCCCCCCEE
Confidence 345678999998763 5666666665 889999988888887775432 10 0011111111 1111 133458999
Q ss_pred EecchhcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 232 IASEVIEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 232 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
+.... -...+..+.+.|+++|.++...
T Consensus 232 ld~~g------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 232 IDATG------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred EECCC------CHHHHHHHHHHHhcCCEEEEEc
Confidence 86421 1346788899999999988654
No 375
>PRK07831 short chain dehydrogenase; Provisional
Probab=84.33 E-value=10 Score=33.62 Aligned_cols=79 Identities=13% Similarity=0.131 Sum_probs=51.1
Q ss_pred CCCCeEEEECC-CCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-----c-----c
Q 019123 159 FEGLNIVDVGC-GGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-----E-----E 224 (346)
Q Consensus 159 ~~~~~vLDiG~-G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~ 224 (346)
..++++|=.|+ |.| .++..++++|++|+.+|.++..++...+.+.......++.++.+|+.+.. . .
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 94 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVER 94 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 34678888886 333 35666777799999999988777666554433111135778888886532 0 1
Q ss_pred CCceeEEEecchh
Q 019123 225 QRKFDAVIASEVI 237 (346)
Q Consensus 225 ~~~fDlv~~~~~l 237 (346)
-+..|+++.+.++
T Consensus 95 ~g~id~li~~ag~ 107 (262)
T PRK07831 95 LGRLDVLVNNAGL 107 (262)
T ss_pred cCCCCEEEECCCC
Confidence 2468998877654
No 376
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=84.08 E-value=4.9 Score=36.34 Aligned_cols=94 Identities=17% Similarity=0.181 Sum_probs=56.3
Q ss_pred CCCCeEEEECCC-CchhHHHHHHc-CCe-EEEEcCChHHHHHHHHhhccCCCCCceEEEE-cCc-cccc-c-cCCceeEE
Q 019123 159 FEGLNIVDVGCG-GGILSEPLARM-GAT-VTGIDAVEKNIKIARLHADLDPETSTIEYCC-TTA-EKLV-E-EQRKFDAV 231 (346)
Q Consensus 159 ~~~~~vLDiG~G-~G~~~~~l~~~-~~~-v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~-~d~-~~l~-~-~~~~fDlv 231 (346)
.++.+||=+|+| .|..+..+++. |.+ |+++|.++.-++.+++.-.. .++. .+. ..+. . ....+|+|
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~-------~~i~~~~~~~~~~~~~~~~g~d~v 191 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT-------ALAEPEVLAERQGGLQNGRGVDVA 191 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc-------EecCchhhHHHHHHHhCCCCCCEE
Confidence 367888888775 23344444443 775 99999999888877663211 0111 010 1111 1 23358888
Q ss_pred EecchhcccCCHHHHHHHHHHhcccCceEEEEec
Q 019123 232 IASEVIEHVADPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 232 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
+-.-. -...+..+.+.|+++|.+++.-.
T Consensus 192 id~~G------~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 192 LEFSG------ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred EECCC------ChHHHHHHHHHhcCCCEEEEecc
Confidence 74321 13567888999999999987653
No 377
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.05 E-value=18 Score=31.64 Aligned_cols=75 Identities=15% Similarity=0.108 Sum_probs=49.1
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~~ 226 (346)
.+.+||=+|++.| .++..++++|++|++++-++..+......... ..++.++.+|+.+... .-+
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALERFG 80 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 3457777766443 25556667799999999998766655444432 1457888888865421 123
Q ss_pred ceeEEEecchh
Q 019123 227 KFDAVIASEVI 237 (346)
Q Consensus 227 ~fDlv~~~~~l 237 (346)
.+|+|+.....
T Consensus 81 ~~d~vi~~ag~ 91 (251)
T PRK07231 81 SVDILVNNAGT 91 (251)
T ss_pred CCCEEEECCCC
Confidence 58999886654
No 378
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=83.99 E-value=13 Score=32.84 Aligned_cols=77 Identities=17% Similarity=0.138 Sum_probs=49.3
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~~ 226 (346)
.+++||=.|+..| .++..|+++|++|++++.++...+...+.+...+ .++.++.+|+.+... ..+
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAERFG 83 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3567785555333 3445566679999999999877766655554432 457788899865431 124
Q ss_pred ceeEEEecchhc
Q 019123 227 KFDAVIASEVIE 238 (346)
Q Consensus 227 ~fDlv~~~~~l~ 238 (346)
..|+|+......
T Consensus 84 ~~d~vi~~ag~~ 95 (262)
T PRK13394 84 SVDILVSNAGIQ 95 (262)
T ss_pred CCCEEEECCccC
Confidence 589888766543
No 379
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=83.97 E-value=21 Score=32.37 Aligned_cols=82 Identities=17% Similarity=0.110 Sum_probs=61.6
Q ss_pred CCCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCC-CCceEEEEcCccccc----------cc
Q 019123 159 FEGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPE-TSTIEYCCTTAEKLV----------EE 224 (346)
Q Consensus 159 ~~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~-~~~v~~~~~d~~~l~----------~~ 224 (346)
..++.+|--|.+.| .++..|+++|++|+.++.+++.++...+.....+. ..++..+.+|+.+.+ ..
T Consensus 6 l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~ 85 (270)
T KOG0725|consen 6 LAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEK 85 (270)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHH
Confidence 46778888888888 57788889999999999999988877766554433 356888888986432 12
Q ss_pred -CCceeEEEecchhccc
Q 019123 225 -QRKFDAVIASEVIEHV 240 (346)
Q Consensus 225 -~~~fDlv~~~~~l~~~ 240 (346)
.+..|+++.+......
T Consensus 86 ~~GkidiLvnnag~~~~ 102 (270)
T KOG0725|consen 86 FFGKIDILVNNAGALGL 102 (270)
T ss_pred hCCCCCEEEEcCCcCCC
Confidence 5789999987766543
No 380
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=83.92 E-value=1.9 Score=41.91 Aligned_cols=107 Identities=15% Similarity=0.156 Sum_probs=71.7
Q ss_pred CCCeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-------ccCCceeE
Q 019123 160 EGLNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-------EEQRKFDA 230 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-------~~~~~fDl 230 (346)
....+|-||-|.|.+...+... ...++++++.|.|++.+.+.+.-..- .+..++..|..+.- ..+..||+
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 4457899999999998887665 35899999999999999887643221 23344444432221 14567998
Q ss_pred EEecc---hhcccCCH------HHHHHHHHHhcccCceEEEEecCc
Q 019123 231 VIASE---VIEHVADP------AEFCKSLSALTVSEGATVISTINR 267 (346)
Q Consensus 231 v~~~~---~l~~~~~~------~~~l~~~~r~LkpgG~~~~~~~~~ 267 (346)
+..-- -.+.+.-+ +.+|..+..+|.|-|.|++....+
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r 419 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTR 419 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecC
Confidence 88521 12222222 368888999999999998865543
No 381
>PRK05872 short chain dehydrogenase; Provisional
Probab=83.83 E-value=13 Score=33.87 Aligned_cols=76 Identities=21% Similarity=0.225 Sum_probs=50.4
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc----------ccCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV----------EEQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~----------~~~~ 226 (346)
.+++||=.|++.| .++..++++|++|+.++.+++.++...+.+.. ...+..+.+|+.+.. ..-+
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG---DDRVLTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC---CCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 5678888876655 35566677799999999998877665554432 134555567775532 0125
Q ss_pred ceeEEEecchhc
Q 019123 227 KFDAVIASEVIE 238 (346)
Q Consensus 227 ~fDlv~~~~~l~ 238 (346)
.+|+++.+.++.
T Consensus 85 ~id~vI~nAG~~ 96 (296)
T PRK05872 85 GIDVVVANAGIA 96 (296)
T ss_pred CCCEEEECCCcC
Confidence 689999877653
No 382
>PRK05854 short chain dehydrogenase; Provisional
Probab=83.79 E-value=8 Score=35.66 Aligned_cols=80 Identities=19% Similarity=0.130 Sum_probs=52.7
Q ss_pred CCCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc----------ccC
Q 019123 159 FEGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV----------EEQ 225 (346)
Q Consensus 159 ~~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~----------~~~ 225 (346)
..++++|=.|++.| .++..|+..|++|+.+.-+.+..+.+.+.+.......++.++.+|+.+.. ...
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 35678887777665 35566677799999999987766655544433211246888899986642 113
Q ss_pred CceeEEEecchhc
Q 019123 226 RKFDAVIASEVIE 238 (346)
Q Consensus 226 ~~fDlv~~~~~l~ 238 (346)
+..|+++.+.++.
T Consensus 92 ~~iD~li~nAG~~ 104 (313)
T PRK05854 92 RPIHLLINNAGVM 104 (313)
T ss_pred CCccEEEECCccc
Confidence 4689999876543
No 383
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=83.79 E-value=4.1 Score=31.63 Aligned_cols=88 Identities=16% Similarity=0.117 Sum_probs=55.0
Q ss_pred CCeEEEECCCCc-hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccccc-CCceeEEEecchhc
Q 019123 161 GLNIVDVGCGGG-ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEE-QRKFDAVIASEVIE 238 (346)
Q Consensus 161 ~~~vLDiG~G~G-~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~fDlv~~~~~l~ 238 (346)
..+|.|||-|-= ..+..|+++|++|+++|+++. +.. ..+.|+..|+.+.... =...|+|.+. +
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~-------~a~-----~g~~~v~DDitnP~~~iY~~A~lIYSi---R 78 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK-------TAP-----EGLRFVVDDITNPNISIYEGADLIYSI---R 78 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCCcEEEEecccc-------cCc-----ccceEEEccCCCccHHHhhCccceeec---C
Confidence 459999998865 578889999999999999985 121 2377888888764320 1235777654 3
Q ss_pred ccCCHHHHHHHHHHhcccCceEEEEec
Q 019123 239 HVADPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 239 ~~~~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
.-++....+-.+.+.+ |.-+++...
T Consensus 79 pppEl~~~ildva~aV--ga~l~I~pL 103 (129)
T COG1255 79 PPPELQSAILDVAKAV--GAPLYIKPL 103 (129)
T ss_pred CCHHHHHHHHHHHHhh--CCCEEEEec
Confidence 3333334444444433 344555443
No 384
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=83.72 E-value=12 Score=34.61 Aligned_cols=98 Identities=17% Similarity=0.195 Sum_probs=57.2
Q ss_pred CCCCCCeEEEECCC-CchhHHHHHHc-CC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccc-cc--ccCCceeE
Q 019123 157 RPFEGLNIVDVGCG-GGILSEPLARM-GA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEK-LV--EEQRKFDA 230 (346)
Q Consensus 157 ~~~~~~~vLDiG~G-~G~~~~~l~~~-~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-l~--~~~~~fDl 230 (346)
...++.+||-.|+| .|..+..++.. |. .+++++.++...+.+++.- .. .-+.....+... +. .+.+.+|+
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g-~~---~vi~~~~~~~~~~i~~~~~~~~~d~ 239 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAG-AT---DIINPKNGDIVEQILELTGGRGVDC 239 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhC-Cc---EEEcCCcchHHHHHHHHcCCCCCcE
Confidence 34567788887765 35566666655 64 7899988887777665431 10 001111111111 11 12356898
Q ss_pred EEecchhcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 231 VIASEVIEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 231 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
|+-... ....+..+.+.|+++|.++...
T Consensus 240 vld~~g------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 240 VIEAVG------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred EEEccC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 875321 1257888889999999988653
No 385
>PRK05650 short chain dehydrogenase; Provisional
Probab=83.50 E-value=11 Score=33.74 Aligned_cols=74 Identities=12% Similarity=0.069 Sum_probs=47.3
Q ss_pred eEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cCCcee
Q 019123 163 NIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQRKFD 229 (346)
Q Consensus 163 ~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~~~fD 229 (346)
+||-.|+..| .++..|++.|.+|+.++.+.+.++.....+...+ .++.++.+|+.+... .-+.+|
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWGGID 79 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 5676665443 2455566679999999998876665554443332 467788888865421 124689
Q ss_pred EEEecchhc
Q 019123 230 AVIASEVIE 238 (346)
Q Consensus 230 lv~~~~~l~ 238 (346)
+++.+.++.
T Consensus 80 ~lI~~ag~~ 88 (270)
T PRK05650 80 VIVNNAGVA 88 (270)
T ss_pred EEEECCCCC
Confidence 998876543
No 386
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=83.43 E-value=13 Score=34.02 Aligned_cols=93 Identities=16% Similarity=0.199 Sum_probs=58.8
Q ss_pred CCCCCCeEEEEC--CCCchhHHHHHHc-CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-----ccCCce
Q 019123 157 RPFEGLNIVDVG--CGGGILSEPLARM-GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-----EEQRKF 228 (346)
Q Consensus 157 ~~~~~~~vLDiG--~G~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~~~~~f 228 (346)
...++.+||=.| +|.|..+..++.. |.+|++++.+++..+.+++. . . . .++...-.++. .....+
T Consensus 140 ~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~-G---a-~--~vi~~~~~~~~~~v~~~~~~gv 212 (329)
T cd08294 140 KPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKEL-G---F-D--AVFNYKTVSLEEALKEAAPDGI 212 (329)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc-C---C-C--EEEeCCCccHHHHHHHHCCCCc
Confidence 345678888877 4566677777765 88999999998888877652 1 1 1 11211111110 112458
Q ss_pred eEEEecchhcccCCHHHHHHHHHHhcccCceEEEE
Q 019123 229 DAVIASEVIEHVADPAEFCKSLSALTVSEGATVIS 263 (346)
Q Consensus 229 Dlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~ 263 (346)
|+|+-... ...+..+.+.|+++|.++..
T Consensus 213 d~vld~~g-------~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 213 DCYFDNVG-------GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred EEEEECCC-------HHHHHHHHHhhccCCEEEEE
Confidence 98874321 24678889999999998865
No 387
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.35 E-value=6 Score=36.18 Aligned_cols=99 Identities=19% Similarity=0.216 Sum_probs=61.3
Q ss_pred CeEEEECCCC--chhHHHHHHcCCeEEEEcCChHHHHHHHHhhcc-------CCC---------CCceEEEEcCcccccc
Q 019123 162 LNIVDVGCGG--GILSEPLARMGATVTGIDAVEKNIKIARLHADL-------DPE---------TSTIEYCCTTAEKLVE 223 (346)
Q Consensus 162 ~~vLDiG~G~--G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~-------~~~---------~~~v~~~~~d~~~l~~ 223 (346)
.+|-=||+|+ +.++..++..|.+|+.+|.+++.++.+.+++.. .+. ..++++ ..|.+.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~~-- 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLGDF-- 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHHHh--
Confidence 3788889984 467777888899999999999999886655322 111 011222 2233221
Q ss_pred cCCceeEEEecchhcccCCHHHHHHHHHHhc-ccCceEEEEecC
Q 019123 224 EQRKFDAVIASEVIEHVADPAEFCKSLSALT-VSEGATVISTIN 266 (346)
Q Consensus 224 ~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~L-kpgG~~~~~~~~ 266 (346)
...|+|+-. +.+...-...++.++.+++ +||.+|.-.+..
T Consensus 83 --~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~snTS~ 123 (286)
T PRK07819 83 --ADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLASNTSS 123 (286)
T ss_pred --CCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 346877754 2333323446788888888 777766655443
No 388
>PRK07774 short chain dehydrogenase; Provisional
Probab=83.33 E-value=9.6 Score=33.40 Aligned_cols=75 Identities=19% Similarity=0.129 Sum_probs=46.9
Q ss_pred CCCeEEEECCCCch----hHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cC
Q 019123 160 EGLNIVDVGCGGGI----LSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQ 225 (346)
Q Consensus 160 ~~~~vLDiG~G~G~----~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~ 225 (346)
.++++|=.|+ +|. ++..++++|.+|++++-++..+....+.+...+ .++.++.+|+.+... .-
T Consensus 5 ~~k~vlItGa-sg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (250)
T PRK07774 5 DDKVAIVTGA-AGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG--GTAIAVQVDVSDPDSAKAMADATVSAF 81 (250)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 4567887764 444 444555669999999988766655444433222 356778888765421 11
Q ss_pred CceeEEEecchh
Q 019123 226 RKFDAVIASEVI 237 (346)
Q Consensus 226 ~~fDlv~~~~~l 237 (346)
+.+|+|+...+.
T Consensus 82 ~~id~vi~~ag~ 93 (250)
T PRK07774 82 GGIDYLVNNAAI 93 (250)
T ss_pred CCCCEEEECCCC
Confidence 368999976654
No 389
>PRK06128 oxidoreductase; Provisional
Probab=83.27 E-value=20 Score=32.64 Aligned_cols=102 Identities=14% Similarity=0.079 Sum_probs=59.6
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChH--HHHHHHHhhccCCCCCceEEEEcCcccccc----------c
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEK--NIKIARLHADLDPETSTIEYCCTTAEKLVE----------E 224 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~--~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~ 224 (346)
.+++||=.|++.| .++..|+++|++|+.+..+.. ..+...+.+...+ .++.++.+|+.+... .
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4568888886555 355666777999988776532 2222323332222 457788888865320 1
Q ss_pred CCceeEEEecchhcc----cCC--H--------------HHHHHHHHHhcccCceEEEE
Q 019123 225 QRKFDAVIASEVIEH----VAD--P--------------AEFCKSLSALTVSEGATVIS 263 (346)
Q Consensus 225 ~~~fDlv~~~~~l~~----~~~--~--------------~~~l~~~~r~LkpgG~~~~~ 263 (346)
-+..|+++.+.++.. +.+ . -.+++.+...++++|.++..
T Consensus 132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 246899987765421 111 1 12556666677788877664
No 390
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=83.00 E-value=14 Score=37.33 Aligned_cols=78 Identities=13% Similarity=-0.003 Sum_probs=47.5
Q ss_pred CCCCeEEEECCCCchhHHH----HHHcCCeEEEEcCChHHHHHHHHhhccC-----C--CCCceEEEEcCcccccc---c
Q 019123 159 FEGLNIVDVGCGGGILSEP----LARMGATVTGIDAVEKNIKIARLHADLD-----P--ETSTIEYCCTTAEKLVE---E 224 (346)
Q Consensus 159 ~~~~~vLDiG~G~G~~~~~----l~~~~~~v~giD~s~~~l~~a~~~~~~~-----~--~~~~v~~~~~d~~~l~~---~ 224 (346)
..+..||-.|+ +|.++.. |++.|++|++++.+.+.+......+... + ...++.++.+|+.+... .
T Consensus 78 ~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a 156 (576)
T PLN03209 78 KDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA 156 (576)
T ss_pred CCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence 35566776654 4555444 4556899999999887665443322211 1 11358889999876431 1
Q ss_pred CCceeEEEecchh
Q 019123 225 QRKFDAVIASEVI 237 (346)
Q Consensus 225 ~~~fDlv~~~~~l 237 (346)
-+..|+|++..+.
T Consensus 157 LggiDiVVn~AG~ 169 (576)
T PLN03209 157 LGNASVVICCIGA 169 (576)
T ss_pred hcCCCEEEEcccc
Confidence 2458988877544
No 391
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=82.91 E-value=4.7 Score=37.39 Aligned_cols=99 Identities=18% Similarity=0.127 Sum_probs=56.8
Q ss_pred CCCCCCeEEEECCC-CchhHHHHHHc-CCe-EEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-c-cCCceeEE
Q 019123 157 RPFEGLNIVDVGCG-GGILSEPLARM-GAT-VTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-E-EQRKFDAV 231 (346)
Q Consensus 157 ~~~~~~~vLDiG~G-~G~~~~~l~~~-~~~-v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-~-~~~~fDlv 231 (346)
...++.+||=+|+| .|..+..+++. |++ |++++.+++.++.+++.-.. .-+.....+...+. . ....+|+|
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~----~~i~~~~~~~~~~~~~~~~~~~d~v 235 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGAD----FVINSGQDDVQEIRELTSGAGADVA 235 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC----EEEcCCcchHHHHHHHhCCCCCCEE
Confidence 34567888888764 22344444443 777 99999999888877553210 00111111111111 1 23368988
Q ss_pred EecchhcccCCHHHHHHHHHHhcccCceEEEEec
Q 019123 232 IASEVIEHVADPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 232 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
+-... -...+..+.+.|+++|.+++...
T Consensus 236 id~~g------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 236 IECSG------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred EECCC------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 74321 23456677889999999987644
No 392
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=82.65 E-value=15 Score=33.89 Aligned_cols=97 Identities=14% Similarity=0.227 Sum_probs=59.4
Q ss_pred CCCCCCeEEEEC--CCCchhHHHHHHc-CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEc-Ccccc-c-ccCCceeE
Q 019123 157 RPFEGLNIVDVG--CGGGILSEPLARM-GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCT-TAEKL-V-EEQRKFDA 230 (346)
Q Consensus 157 ~~~~~~~vLDiG--~G~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~-d~~~l-~-~~~~~fDl 230 (346)
...++.+||=.| +|.|..+..+++. |.+|++++.+++..+.+++. ... .-+..... +..+. . ...+.+|+
T Consensus 135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~l-Ga~---~vi~~~~~~~~~~~~~~~~~~gvdv 210 (325)
T TIGR02825 135 GVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKL-GFD---VAFNYKTVKSLEETLKKASPDGYDC 210 (325)
T ss_pred CCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc-CCC---EEEeccccccHHHHHHHhCCCCeEE
Confidence 445778898887 4567777777765 78999999998887777542 110 00111110 11111 0 12346898
Q ss_pred EEecchhcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 231 VIASEVIEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 231 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
|+-.. . ...+..+.++|++||.+++..
T Consensus 211 v~d~~-----G--~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 211 YFDNV-----G--GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred EEECC-----C--HHHHHHHHHHhCcCcEEEEec
Confidence 87432 1 134578889999999998754
No 393
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=82.45 E-value=11 Score=33.66 Aligned_cols=94 Identities=24% Similarity=0.296 Sum_probs=57.6
Q ss_pred CCCCCCeEEEECCCC-chhHHHHHHc-CCe-EEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEe
Q 019123 157 RPFEGLNIVDVGCGG-GILSEPLARM-GAT-VTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIA 233 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~-v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~ 233 (346)
...++.+||=.|+|. |..+..++.. |.+ |++++.+++.++.+++.-.. ..+ .... ... .....+|+|+.
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~----~~~--~~~~-~~~-~~~~~~d~vl~ 165 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPA----DPV--AADT-ADE-IGGRGADVVIE 165 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCC----ccc--cccc-hhh-hcCCCCCEEEE
Confidence 445778888888764 5555555554 777 99999998888866653200 111 1000 001 12346898875
Q ss_pred cchhcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 234 SEVIEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 234 ~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
... ....+..+.+.|+++|.++...
T Consensus 166 ~~~------~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 166 ASG------SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred ccC------ChHHHHHHHHHhcCCcEEEEEe
Confidence 321 1246778888999999988754
No 394
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=82.36 E-value=7.7 Score=36.59 Aligned_cols=95 Identities=18% Similarity=0.154 Sum_probs=52.2
Q ss_pred CCCCeEEEECCC-CchhHHHHHHc-CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEE-cCcccccccCCceeEEEecc
Q 019123 159 FEGLNIVDVGCG-GGILSEPLARM-GATVTGIDAVEKNIKIARLHADLDPETSTIEYCC-TTAEKLVEEQRKFDAVIASE 235 (346)
Q Consensus 159 ~~~~~vLDiG~G-~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~-~d~~~l~~~~~~fDlv~~~~ 235 (346)
.++.+||=.|+| .|..+..+++. |.+|++++.+++....+.+.+ +. -.++. .+...+....+.+|+|+-..
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~---Ga---~~vi~~~~~~~~~~~~~~~D~vid~~ 255 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRL---GA---DSFLVSTDPEKMKAAIGTMDYIIDTV 255 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhC---CC---cEEEcCCCHHHHHhhcCCCCEEEECC
Confidence 467788888875 34445555544 788999888765443332222 11 01111 11111111112478887432
Q ss_pred hhcccCCHHHHHHHHHHhcccCceEEEEec
Q 019123 236 VIEHVADPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 236 ~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
. . ...+.++.+.|++||.+++...
T Consensus 256 g-----~-~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 256 S-----A-VHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred C-----C-HHHHHHHHHHhcCCcEEEEeCC
Confidence 2 2 2467778899999999887643
No 395
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.36 E-value=7.3 Score=34.13 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=48.7
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~~ 226 (346)
.+.++|=.|++.| .++..+++.|.+|++++.++..++.+.+.+...+ .++.++.+|+.+... .-+
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG--TEVRGYAANVTDEEDVEATFAQIAEDFG 81 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4568888876444 2444556678999999999877666555444322 467788888754310 114
Q ss_pred ceeEEEecch
Q 019123 227 KFDAVIASEV 236 (346)
Q Consensus 227 ~fDlv~~~~~ 236 (346)
.+|+|+...+
T Consensus 82 ~id~vi~~ag 91 (253)
T PRK08217 82 QLNGLINNAG 91 (253)
T ss_pred CCCEEEECCC
Confidence 6899987654
No 396
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=82.27 E-value=11 Score=39.19 Aligned_cols=102 Identities=18% Similarity=0.043 Sum_probs=67.1
Q ss_pred CCeEEEECCCC--chhHHHHH-HcCCeEEEEcCChHHHHHHHHhhccC-------C-C--------CCceEEEEcCcccc
Q 019123 161 GLNIVDVGCGG--GILSEPLA-RMGATVTGIDAVEKNIKIARLHADLD-------P-E--------TSTIEYCCTTAEKL 221 (346)
Q Consensus 161 ~~~vLDiG~G~--G~~~~~l~-~~~~~v~giD~s~~~l~~a~~~~~~~-------~-~--------~~~v~~~~~d~~~l 221 (346)
-.+|.=||+|+ ..++..++ ..|.+|+.+|.+++.++.+..++... + + ..++.+. .|...+
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~ 387 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRGF 387 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHHh
Confidence 36899999998 35777777 67999999999999988876544321 1 1 1233333 222211
Q ss_pred cccCCceeEEEecchhcccCCHHHHHHHHHHhcccCceEEEEecCcc
Q 019123 222 VEEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTINRS 268 (346)
Q Consensus 222 ~~~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~ 268 (346)
...|+|+=. +.+.+.-..+++.++.++++|+.+|.-.+.+..
T Consensus 388 ----~~aDlViEa-v~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~ 429 (708)
T PRK11154 388 ----KHADVVIEA-VFEDLALKQQMVAEVEQNCAPHTIFASNTSSLP 429 (708)
T ss_pred ----ccCCEEeec-ccccHHHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence 246777633 344444456899999999999988877665543
No 397
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=82.23 E-value=11 Score=32.06 Aligned_cols=96 Identities=21% Similarity=0.221 Sum_probs=48.8
Q ss_pred eEEEECCCC-c-hhHHHHHHcCCeEEEEcCChHHHHHHHHhhcc---CCC---------CCceEEEEcCcccccccCCce
Q 019123 163 NIVDVGCGG-G-ILSEPLARMGATVTGIDAVEKNIKIARLHADL---DPE---------TSTIEYCCTTAEKLVEEQRKF 228 (346)
Q Consensus 163 ~vLDiG~G~-G-~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~---~~~---------~~~v~~~~~d~~~l~~~~~~f 228 (346)
+|-=+|.|- | ..+..+++.|.+|+|+|++++-++..++-... .++ ..++.+. .|.+... ...
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai---~~a 77 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI---KDA 77 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH---HH-
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh---hcc
Confidence 556666663 2 34556677899999999999988776643211 110 1223332 2222211 235
Q ss_pred eEEEecchhc----ccCC---HHHHHHHHHHhcccCceEEE
Q 019123 229 DAVIASEVIE----HVAD---PAEFCKSLSALTVSEGATVI 262 (346)
Q Consensus 229 Dlv~~~~~l~----~~~~---~~~~l~~~~r~LkpgG~~~~ 262 (346)
|+++..-..- ...| ...+++.+..+|++|-.+++
T Consensus 78 dv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~ 118 (185)
T PF03721_consen 78 DVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVI 118 (185)
T ss_dssp SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEE
T ss_pred ceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEE
Confidence 7666543211 1112 46789999999998555444
No 398
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=82.00 E-value=8.5 Score=37.08 Aligned_cols=88 Identities=16% Similarity=0.055 Sum_probs=52.9
Q ss_pred CCCCeEEEECCCC-chhHH-HHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecch
Q 019123 159 FEGLNIVDVGCGG-GILSE-PLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEV 236 (346)
Q Consensus 159 ~~~~~vLDiG~G~-G~~~~-~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~ 236 (346)
..+.+|+=+|+|. |.... .+...|.+|+++|.++.....+... + . ...+.++. . ...|+|++.-
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~----G----~--~v~~leea-l--~~aDVVItaT- 258 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMD----G----F--RVMTMEEA-A--KIGDIFITAT- 258 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhc----C----C--EeCCHHHH-H--hcCCEEEECC-
Confidence 4688999999986 33222 2333488999999988654433321 1 1 11233222 1 2469887642
Q ss_pred hcccCCHHHHHH-HHHHhcccCceEEEEec
Q 019123 237 IEHVADPAEFCK-SLSALTVSEGATVISTI 265 (346)
Q Consensus 237 l~~~~~~~~~l~-~~~r~LkpgG~~~~~~~ 265 (346)
....++. +....+|+|++++....
T Consensus 259 -----G~~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 259 -----GNKDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred -----CCHHHHHHHHHhcCCCCcEEEEECC
Confidence 2234454 47788999998887644
No 399
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.56 E-value=4.1 Score=37.21 Aligned_cols=99 Identities=18% Similarity=0.137 Sum_probs=57.7
Q ss_pred eEEEECCCC--chhHHHHHHcCCeEEEEcCChHHHHHHHHhhcc-------CC-CC--------CceEEEEcCccccccc
Q 019123 163 NIVDVGCGG--GILSEPLARMGATVTGIDAVEKNIKIARLHADL-------DP-ET--------STIEYCCTTAEKLVEE 224 (346)
Q Consensus 163 ~vLDiG~G~--G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~-------~~-~~--------~~v~~~~~d~~~l~~~ 224 (346)
+|.=||+|. +.++..++..|.+|+++|.+++.++.+.+.... .+ +. .++.+. .+..+.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~--- 78 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKAA--- 78 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHHh---
Confidence 677788873 346677777899999999999998887653211 00 00 112222 222211
Q ss_pred CCceeEEEecchhcccCCHHHHHHHHHHhcccCceEEEEecC
Q 019123 225 QRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 225 ~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
-...|+|+..-. ....-...++.++.+.++|+.++.+...+
T Consensus 79 ~~~aD~Vi~avp-e~~~~k~~~~~~l~~~~~~~~il~~~tSt 119 (288)
T PRK09260 79 VADADLVIEAVP-EKLELKKAVFETADAHAPAECYIATNTST 119 (288)
T ss_pred hcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 124688875421 11111235777888888888766554443
No 400
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=81.28 E-value=6.3 Score=36.56 Aligned_cols=95 Identities=24% Similarity=0.295 Sum_probs=57.8
Q ss_pred CCCCCCeEEEECCCC-chhHHHHHHc-CCe-EEEEcCChHHHHHHHHhhccCCCCCceEEEEcC---cccc-c-ccCCce
Q 019123 157 RPFEGLNIVDVGCGG-GILSEPLARM-GAT-VTGIDAVEKNIKIARLHADLDPETSTIEYCCTT---AEKL-V-EEQRKF 228 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~-v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d---~~~l-~-~~~~~f 228 (346)
...++.+||-.|+|. |..+..++.. |.+ |++++-++...+.+++. +. ..++... ...+ . .....+
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~----g~---~~~~~~~~~~~~~~~~~~~~~~~ 228 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAREL----GA---DDTINPKEEDVEKVRELTEGRGA 228 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CC---CEEecCccccHHHHHHHhCCCCC
Confidence 345677898888654 5555555554 776 99999888877766432 11 1111111 1111 1 123358
Q ss_pred eEEEecchhcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 229 DAVIASEVIEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 229 Dlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
|+|+... .....+..+.++|+++|.++...
T Consensus 229 d~vld~~------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 229 DLVIEAA------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CEEEECC------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 9988541 12356788899999999988764
No 401
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=81.16 E-value=7 Score=35.72 Aligned_cols=95 Identities=21% Similarity=0.133 Sum_probs=57.0
Q ss_pred CeEEEECCCC--chhHHHHHHcCCeEEEEcCChHHHHHHHHhhccC----------CC---------CCceEEEEcCccc
Q 019123 162 LNIVDVGCGG--GILSEPLARMGATVTGIDAVEKNIKIARLHADLD----------PE---------TSTIEYCCTTAEK 220 (346)
Q Consensus 162 ~~vLDiG~G~--G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~----------~~---------~~~v~~~~~d~~~ 220 (346)
.+|.=||+|. +.++..++..|.+|+++|.+++.++.+++.+... +. ..++.+. .|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSYES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCHHH
Confidence 4688889984 3467777788999999999999988765543221 10 0112221 12211
Q ss_pred ccccCCceeEEEecchhcccCCHHHHHHHHHHhcccCceEEE
Q 019123 221 LVEEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVI 262 (346)
Q Consensus 221 l~~~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~ 262 (346)
-...|+|+..- .........+++++...++|+.+|+.
T Consensus 83 ----~~~aDlVieav-~e~~~~k~~~~~~l~~~~~~~~il~S 119 (291)
T PRK06035 83 ----LSDADFIVEAV-PEKLDLKRKVFAELERNVSPETIIAS 119 (291)
T ss_pred ----hCCCCEEEEcC-cCcHHHHHHHHHHHHhhCCCCeEEEE
Confidence 12468887652 11111235678888888888876653
No 402
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=81.05 E-value=20 Score=31.43 Aligned_cols=74 Identities=15% Similarity=0.043 Sum_probs=47.1
Q ss_pred CCeEEEECCCCchhHHH----HHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cCC
Q 019123 161 GLNIVDVGCGGGILSEP----LARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQR 226 (346)
Q Consensus 161 ~~~vLDiG~G~G~~~~~----l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~~ 226 (346)
+++||=.|+ +|.++.. |+++|.+|++++.++..++.........+ .++.++.+|+.+... ..+
T Consensus 4 ~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 4 GKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 456776654 5555444 45568899999999877766554443322 467888888765320 123
Q ss_pred ceeEEEecchh
Q 019123 227 KFDAVIASEVI 237 (346)
Q Consensus 227 ~fDlv~~~~~l 237 (346)
.+|+|+.....
T Consensus 81 ~~d~vi~~a~~ 91 (258)
T PRK12429 81 GVDILVNNAGI 91 (258)
T ss_pred CCCEEEECCCC
Confidence 58998876654
No 403
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=81.05 E-value=4.7 Score=36.21 Aligned_cols=78 Identities=14% Similarity=0.133 Sum_probs=46.3
Q ss_pred hHHHHHHcC--CeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhcccCCHHHHHHHHH
Q 019123 174 LSEPLARMG--ATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEHVADPAEFCKSLS 251 (346)
Q Consensus 174 ~~~~l~~~~--~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~~~~~~~~l~~~~ 251 (346)
++..|.+.| .+|+|+|.++..++.+.+.-. +.-...+.+.+ ..+|+|+..--+. ....+++++.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~-------~~~~~~~~~~~----~~~DlvvlavP~~---~~~~~l~~~~ 66 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGI-------IDEASTDIEAV----EDADLVVLAVPVS---AIEDVLEEIA 66 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTS-------SSEEESHHHHG----GCCSEEEE-S-HH---HHHHHHHHHH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCC-------eeeccCCHhHh----cCCCEEEEcCCHH---HHHHHHHHhh
Confidence 356677777 699999999999988865421 11111111221 2469999875443 3467888888
Q ss_pred HhcccCceEEEEec
Q 019123 252 ALTVSEGATVISTI 265 (346)
Q Consensus 252 r~LkpgG~~~~~~~ 265 (346)
..+++|+++.=...
T Consensus 67 ~~~~~~~iv~Dv~S 80 (258)
T PF02153_consen 67 PYLKPGAIVTDVGS 80 (258)
T ss_dssp CGS-TTSEEEE--S
T ss_pred hhcCCCcEEEEeCC
Confidence 88888876554433
No 404
>PRK07063 short chain dehydrogenase; Provisional
Probab=80.96 E-value=7.9 Score=34.31 Aligned_cols=78 Identities=17% Similarity=0.136 Sum_probs=53.3
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~~ 226 (346)
.+++||-.|++.| .++..|+++|++|++++.+++.++...+.+.......++.++.+|+.+... .-+
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 85 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG 85 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4678888887655 356667777999999999988777666555432122468888888865420 124
Q ss_pred ceeEEEecchh
Q 019123 227 KFDAVIASEVI 237 (346)
Q Consensus 227 ~fDlv~~~~~l 237 (346)
.+|+++.+..+
T Consensus 86 ~id~li~~ag~ 96 (260)
T PRK07063 86 PLDVLVNNAGI 96 (260)
T ss_pred CCcEEEECCCc
Confidence 68998876654
No 405
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=80.91 E-value=10 Score=35.44 Aligned_cols=99 Identities=19% Similarity=0.201 Sum_probs=56.7
Q ss_pred CCCCCCeEEEECCCC-chhHHHHHHc-CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-----c-cCCce
Q 019123 157 RPFEGLNIVDVGCGG-GILSEPLARM-GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-----E-EQRKF 228 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~-~~~~f 228 (346)
...++.+||=+|+|. |..+..++.. |.+|+++|.+++.++.+++.- .. .-+.....+.+++. . ....+
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~G-a~---~~i~~~~~~~~~~~~~~~~~t~~~g~ 238 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFG-AD---LTLNPKDKSAREVKKLIKAFAKARGL 238 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhC-Cc---eEecCccccHHHHHHHHHhhcccCCC
Confidence 445788999999854 4555555554 779999999999888876531 10 00111111111110 0 11234
Q ss_pred e----EEEecchhcccCCHHHHHHHHHHhcccCceEEEEec
Q 019123 229 D----AVIASEVIEHVADPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 229 D----lv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
| +|+- .... ...+..+.++|++||.+++...
T Consensus 239 d~~~d~v~d-----~~g~-~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 239 RSTGWKIFE-----CSGS-KPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred CCCcCEEEE-----CCCC-hHHHHHHHHHHhcCCeEEEECc
Confidence 4 4442 2222 3466778889999999988654
No 406
>PRK12937 short chain dehydrogenase; Provisional
Probab=80.86 E-value=29 Score=30.10 Aligned_cols=103 Identities=10% Similarity=0.000 Sum_probs=58.0
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCCh-HHHHHHHHhhccCCCCCceEEEEcCccccc-----c-----cC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVE-KNIKIARLHADLDPETSTIEYCCTTAEKLV-----E-----EQ 225 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~-~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~~ 225 (346)
++++||=.|++.| .++..++++|++++.+..+. ...+...+.....+ .++.++.+|+.+.. + .-
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAG--GRAIAVQADVADAAAVTRLFDAAETAF 81 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4567888877544 35556666788888776543 22333333332222 46888888886532 0 12
Q ss_pred CceeEEEecchhcccC-----CH--------------HHHHHHHHHhcccCceEEEEe
Q 019123 226 RKFDAVIASEVIEHVA-----DP--------------AEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 226 ~~fDlv~~~~~l~~~~-----~~--------------~~~l~~~~r~LkpgG~~~~~~ 264 (346)
+..|+++.+.+..... +. ..+++.+.+.++++|.++...
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 139 (245)
T PRK12937 82 GRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLS 139 (245)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEe
Confidence 4689988766542210 11 123555666667777777654
No 407
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=80.79 E-value=12 Score=34.52 Aligned_cols=100 Identities=17% Similarity=0.170 Sum_probs=54.5
Q ss_pred CCCeEEEECCCC--chhHHHHHHcCCeEEEEcCChHHHHHHHHhh-ccCCCCCceEEEEcCcccccccCCceeEEEecch
Q 019123 160 EGLNIVDVGCGG--GILSEPLARMGATVTGIDAVEKNIKIARLHA-DLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEV 236 (346)
Q Consensus 160 ~~~~vLDiG~G~--G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~-~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~ 236 (346)
..++|+=||+|. |.++..|++.|.+|+.+.-++. +..++.. .-.....+..+....+...+.....+|+|++.-=
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK 81 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLK 81 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEec
Confidence 346899998883 4577777788899998887652 2222211 0000001111111111111112346899887532
Q ss_pred hcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 237 IEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 237 l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
-. +...+++.+...+++++.++...
T Consensus 82 ~~---~~~~~~~~l~~~~~~~~~iv~lq 106 (313)
T PRK06249 82 TT---ANALLAPLIPQVAAPDAKVLLLQ 106 (313)
T ss_pred CC---ChHhHHHHHhhhcCCCCEEEEec
Confidence 21 34567788888899998766553
No 408
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=80.72 E-value=4.7 Score=34.34 Aligned_cols=88 Identities=13% Similarity=0.084 Sum_probs=59.6
Q ss_pred CCCCeEEEECCC-CchhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchh
Q 019123 159 FEGLNIVDVGCG-GGILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVI 237 (346)
Q Consensus 159 ~~~~~vLDiG~G-~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l 237 (346)
..+..||=+|.= +|.....++...++|+.+|+.|.|-... .+++.|... +.++.+.+|+|+-.-+|
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~~~~vtv~Di~p~~r~~l---------p~~v~Fr~~----~~~~~G~~DlivDlTGl 109 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSKADKVTVVDIHPFMRGFL---------PNNVKFRNL----LKFIRGEVDLIVDLTGL 109 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcccceEEEecCCHHHHhcC---------CCCccHhhh----cCCCCCceeEEEecccc
Confidence 356788888875 7777777777778999999999665432 245666543 33457889999988877
Q ss_pred cccCCHHHHHHHHHHhcccCceEEEEecC
Q 019123 238 EHVADPAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 238 ~~~~~~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
..+. | ++|. -+.| +.|++..+.
T Consensus 110 GG~~-P-e~L~----~fnp-~vfiVEdP~ 131 (254)
T COG4017 110 GGIE-P-EFLA----KFNP-KVFIVEDPK 131 (254)
T ss_pred CCCC-H-HHHh----ccCC-ceEEEECCC
Confidence 7664 2 3333 3454 567776663
No 409
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=80.68 E-value=4 Score=37.30 Aligned_cols=67 Identities=16% Similarity=0.195 Sum_probs=42.7
Q ss_pred CCceeEEEecchhcccCCHHHHHHHHHHhcccCceEEEEecCcchHHHHHHHHHHHHHhhhcCCCccccccCCCHHHHHH
Q 019123 225 QRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTINRSMRAYATAIIAAEHILHWLPKGTHQWSSFLTPEELVL 304 (346)
Q Consensus 225 ~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (346)
.+.||+|+++...-|+-.+. +.++++|||.|++....... . ...... . --.+.+.+
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEtaKfmv-----d-LrKEq~-----------~--~F~~kv~e 275 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETAKFMV-----D-LRKEQL-----------Q--EFVKKVKE 275 (289)
T ss_pred cCCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcchhhe-----e-CCHHHH-----------H--HHHHHHHH
Confidence 57899999887665554544 77789999999887631100 0 000000 0 01267889
Q ss_pred HHHHCCCcEEE
Q 019123 305 ILQRASIDVKE 315 (346)
Q Consensus 305 ll~~aGF~~v~ 315 (346)
|+++|||+.+.
T Consensus 276 LA~~aG~~p~~ 286 (289)
T PF14740_consen 276 LAKAAGFKPVT 286 (289)
T ss_pred HHHHCCCcccc
Confidence 99999998753
No 410
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=80.67 E-value=19 Score=33.37 Aligned_cols=98 Identities=22% Similarity=0.242 Sum_probs=58.1
Q ss_pred CCCCCCeEEEECCCC-chhHHHHHHc-CCe-EEEEcCChHHHHHHHHhhccCCCCCceEEEEcC----ccccc--ccCCc
Q 019123 157 RPFEGLNIVDVGCGG-GILSEPLARM-GAT-VTGIDAVEKNIKIARLHADLDPETSTIEYCCTT----AEKLV--EEQRK 227 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~-v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d----~~~l~--~~~~~ 227 (346)
...++.+||-.|+|. |..+..++.. |.+ |++++-+++..+.+++. ... .-+.....+ ...+. ..+..
T Consensus 159 ~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~---~vi~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
T cd05285 159 GVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GAT---HTVNVRTEDTPESAEKIAELLGGKG 234 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CCc---EEeccccccchhHHHHHHHHhCCCC
Confidence 456778888877654 5555566655 776 99999888877776542 110 001111111 11111 22345
Q ss_pred eeEEEecchhcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 228 FDAVIASEVIEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 228 fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
+|+|+-.... ...+..+.+.|+++|.++...
T Consensus 235 ~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 235 PDVVIECTGA------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCEEEECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 8999854321 236788899999999988654
No 411
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=80.59 E-value=19 Score=33.27 Aligned_cols=90 Identities=12% Similarity=0.200 Sum_probs=56.3
Q ss_pred CeEEEECC--CCchhHHHHHHc-CC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-----ccCCceeEEE
Q 019123 162 LNIVDVGC--GGGILSEPLARM-GA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-----EEQRKFDAVI 232 (346)
Q Consensus 162 ~~vLDiG~--G~G~~~~~l~~~-~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~~~~~fDlv~ 232 (346)
.+||=.|+ |.|..+..++.. |+ +|++++.+++..+.+++.+.. . .++...-.++. ..+..+|+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa----~--~vi~~~~~~~~~~i~~~~~~gvd~vi 229 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF----D--AAINYKTDNVAERLRELCPEGVDVYF 229 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC----c--EEEECCCCCHHHHHHHHCCCCceEEE
Confidence 78888875 577777777765 87 799999998877777653321 1 11211111111 1124689887
Q ss_pred ecchhcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 233 ASEVIEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 233 ~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
-... . ..+..+.+.|+++|.++...
T Consensus 230 d~~g-----~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 230 DNVG-----G--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred ECCC-----c--HHHHHHHHHhccCCEEEEEe
Confidence 5321 2 23577889999999988753
No 412
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=80.55 E-value=5.4 Score=33.71 Aligned_cols=100 Identities=22% Similarity=0.232 Sum_probs=60.5
Q ss_pred eEEEECCCCc--hhHHHHHHcCCeEEEEcCChHHHHHHHHhhcc-------CC-C--------CCceEEEEcCccccccc
Q 019123 163 NIVDVGCGGG--ILSEPLARMGATVTGIDAVEKNIKIARLHADL-------DP-E--------TSTIEYCCTTAEKLVEE 224 (346)
Q Consensus 163 ~vLDiG~G~G--~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~-------~~-~--------~~~v~~~~~d~~~l~~~ 224 (346)
+|.=||+|+= .++..++..|.+|+.+|.+++.++.+++++.. .+ + ..++.+ ..|.+++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~~~-- 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEEAV-- 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGGGC--
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHHHh--
Confidence 3566888753 46777778899999999999999887776544 11 1 123443 33444432
Q ss_pred CCceeEEEecchhcccCCHHHHHHHHHHhcccCceEEEEecCcc
Q 019123 225 QRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTINRS 268 (346)
Q Consensus 225 ~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~~ 268 (346)
..|+|+=. +.+.+.-...+++++.+++.|+-+|...+.+..
T Consensus 78 --~adlViEa-i~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~ 118 (180)
T PF02737_consen 78 --DADLVIEA-IPEDLELKQELFAELDEICPPDTILASNTSSLS 118 (180)
T ss_dssp --TESEEEE--S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-
T ss_pred --hhheehhh-ccccHHHHHHHHHHHHHHhCCCceEEecCCCCC
Confidence 46777632 123333345799999999999998888766543
No 413
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=80.54 E-value=19 Score=31.61 Aligned_cols=65 Identities=8% Similarity=0.194 Sum_probs=42.1
Q ss_pred CCCeEEEECCCCchh--HHHHHHcCCeEEEE--cCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEec
Q 019123 160 EGLNIVDVGCGGGIL--SEPLARMGATVTGI--DAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIAS 234 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~--~~~l~~~~~~v~gi--D~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~ 234 (346)
.+.+||=||+|.-.. +..|++.|++|+.+ +++++....+.. +++.++..+.+.-.. ..+++|++.
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~--------~~i~~~~r~~~~~dl--~g~~LViaA 92 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKY--------GNLKLIKGNYDKEFI--KDKHLIVIA 92 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhC--------CCEEEEeCCCChHHh--CCCcEEEEC
Confidence 577999999997643 33455678876666 677776654431 457888766554333 236777765
No 414
>PRK08177 short chain dehydrogenase; Provisional
Probab=80.43 E-value=17 Score=31.44 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=42.1
Q ss_pred eEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc--------ccCCceeEE
Q 019123 163 NIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV--------EEQRKFDAV 231 (346)
Q Consensus 163 ~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~--------~~~~~fDlv 231 (346)
+||=.|+..| .++..|++.|++|++++.++.-.+..... .++.+..+|+.+.. .....+|+|
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~D~~d~~~~~~~~~~~~~~~id~v 75 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQAL-------PGVHIEKLDMNDPASLDQLLQRLQGQRFDLL 75 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhc-------cccceEEcCCCCHHHHHHHHHHhhcCCCCEE
Confidence 5666665443 25666777799999999887655443321 24566777775532 123468988
Q ss_pred Eecchh
Q 019123 232 IASEVI 237 (346)
Q Consensus 232 ~~~~~l 237 (346)
+.+..+
T Consensus 76 i~~ag~ 81 (225)
T PRK08177 76 FVNAGI 81 (225)
T ss_pred EEcCcc
Confidence 876544
No 415
>PRK07985 oxidoreductase; Provisional
Probab=80.35 E-value=19 Score=32.80 Aligned_cols=102 Identities=11% Similarity=-0.024 Sum_probs=59.5
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCCh--HHHHHHHHhhccCCCCCceEEEEcCccccc----------cc
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVE--KNIKIARLHADLDPETSTIEYCCTTAEKLV----------EE 224 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~--~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~----------~~ 224 (346)
.++++|-.|++.| .++..|++.|++|+.++.+. ..++.........+ .++.++.+|+.+.. ..
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 125 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECG--RKAVLLPGDLSDEKFARSLVHEAHKA 125 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 5578998887555 36667777899999887543 23333333332222 45778888886532 01
Q ss_pred CCceeEEEecchhcc----cCC-----H-----------HHHHHHHHHhcccCceEEEE
Q 019123 225 QRKFDAVIASEVIEH----VAD-----P-----------AEFCKSLSALTVSEGATVIS 263 (346)
Q Consensus 225 ~~~fDlv~~~~~l~~----~~~-----~-----------~~~l~~~~r~LkpgG~~~~~ 263 (346)
-+..|+++.+..... +.+ + -.+++.+...++.+|.+++.
T Consensus 126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~i 184 (294)
T PRK07985 126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITT 184 (294)
T ss_pred hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEE
Confidence 246798887654321 111 1 13455666667778876664
No 416
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=80.18 E-value=19 Score=31.79 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=46.8
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-----c-----cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-----E-----EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~~~ 226 (346)
.++++|-.|++.| .++..|+++|++|++++.+.. +...+.....+ .++.++.+|+.+.. + .-+
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 82 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEVMG 82 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 5678898887766 456667778999999887542 22222222222 46778888886542 1 125
Q ss_pred ceeEEEecchh
Q 019123 227 KFDAVIASEVI 237 (346)
Q Consensus 227 ~fDlv~~~~~l 237 (346)
..|+++.+..+
T Consensus 83 ~iD~lv~~ag~ 93 (251)
T PRK12481 83 HIDILINNAGI 93 (251)
T ss_pred CCCEEEECCCc
Confidence 68998877654
No 417
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=80.16 E-value=12 Score=34.70 Aligned_cols=98 Identities=14% Similarity=0.192 Sum_probs=60.3
Q ss_pred CCCCCCeEEEECC--CCchhHHHHHHc-CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEc-Cccc-cc-ccCCceeE
Q 019123 157 RPFEGLNIVDVGC--GGGILSEPLARM-GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCT-TAEK-LV-EEQRKFDA 230 (346)
Q Consensus 157 ~~~~~~~vLDiG~--G~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~-d~~~-l~-~~~~~fDl 230 (346)
...++.+||=.|+ |.|..+..++.. |.+|++++.+++..+.+++.+... .-+.+... +..+ +. ...+.+|+
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~~i~~~~~~gvd~ 224 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFD---DAFNYKEEPDLDAALKRYFPNGIDI 224 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCc---eeEEcCCcccHHHHHHHhCCCCcEE
Confidence 4567889998885 566677767665 889999998888887776533211 11111111 1111 11 11246898
Q ss_pred EEecchhcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 231 VIASEVIEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 231 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
|+-... ...+..+.+.|+++|.+++..
T Consensus 225 v~d~~g-------~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 225 YFDNVG-------GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred EEECCC-------HHHHHHHHHHhccCcEEEEec
Confidence 875321 246778889999999988753
No 418
>PRK06101 short chain dehydrogenase; Provisional
Probab=80.09 E-value=28 Score=30.40 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=33.8
Q ss_pred eEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccc
Q 019123 163 NIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKL 221 (346)
Q Consensus 163 ~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l 221 (346)
.+|=.|+..| .++..|+++|++|++++.+++.++...... .++.++.+|+.+.
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~D~~~~ 58 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQS------ANIFTLAFDVTDH 58 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhc------CCCeEEEeeCCCH
Confidence 4565554333 245555667999999999887665543321 3567888888654
No 419
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=79.67 E-value=9.1 Score=35.74 Aligned_cols=98 Identities=18% Similarity=0.145 Sum_probs=62.7
Q ss_pred CCCCCCeEEEEC--CCCchhHHHHHHc-CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc--c-cCCceeE
Q 019123 157 RPFEGLNIVDVG--CGGGILSEPLARM-GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV--E-EQRKFDA 230 (346)
Q Consensus 157 ~~~~~~~vLDiG--~G~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~--~-~~~~fDl 230 (346)
...++.+||=.| +|.|.++..|+++ |+.++++--+++-.+.+++.... .-+.+...|+.+-- . ....+|+
T Consensus 139 ~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd----~vi~y~~~~~~~~v~~~t~g~gvDv 214 (326)
T COG0604 139 GLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGAD----HVINYREEDFVEQVRELTGGKGVDV 214 (326)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCC----EEEcCCcccHHHHHHHHcCCCCceE
Confidence 455688999888 4556788888887 55777887777777765554322 12333333332211 1 2346999
Q ss_pred EEecchhcccCCHHHHHHHHHHhcccCceEEEEec
Q 019123 231 VIASEVIEHVADPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 231 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
|+..-. ...+......|++||.++....
T Consensus 215 v~D~vG-------~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 215 VLDTVG-------GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred EEECCC-------HHHHHHHHHHhccCCEEEEEec
Confidence 986532 3456678889999998887554
No 420
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=79.39 E-value=10 Score=34.84 Aligned_cols=88 Identities=16% Similarity=0.129 Sum_probs=53.4
Q ss_pred CeEEEECCCC--chhHHHHHHcCC--eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchh
Q 019123 162 LNIVDVGCGG--GILSEPLARMGA--TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVI 237 (346)
Q Consensus 162 ~~vLDiG~G~--G~~~~~l~~~~~--~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l 237 (346)
.+|.=||+|. +.++..+...|. +|+++|.+++.++.+++. +. .. ....+..+. -...|+|+..--.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~----g~--~~-~~~~~~~~~---~~~aDvViiavp~ 76 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL----GL--GD-RVTTSAAEA---VKGADLVILCVPV 76 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC----CC--Cc-eecCCHHHH---hcCCCEEEECCCH
Confidence 5788889886 345566666664 899999999877766542 11 01 111222211 1347998876533
Q ss_pred cccCCHHHHHHHHHHhcccCceEEE
Q 019123 238 EHVADPAEFCKSLSALTVSEGATVI 262 (346)
Q Consensus 238 ~~~~~~~~~l~~~~r~LkpgG~~~~ 262 (346)
. ....+++++...+++|++++.
T Consensus 77 ~---~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 77 G---ASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred H---HHHHHHHHHHhhCCCCCEEEe
Confidence 2 134567777778888876544
No 421
>PRK06484 short chain dehydrogenase; Validated
Probab=79.29 E-value=20 Score=35.49 Aligned_cols=100 Identities=12% Similarity=0.071 Sum_probs=61.9
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-----c-----cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-----E-----EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~~~ 226 (346)
.++.+|=.|++.| .++..|+++|++|++++.+++.++...+... .++.++.+|+.+.. + .-+
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~g 342 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALG-----DEHLSVQADITDEAAVESAFAQIQARWG 342 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----CceeEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4567887777666 4566677779999999998877766554432 34556777875532 1 125
Q ss_pred ceeEEEecchhcc-cC-----CH---H-----------HHHHHHHHhcccCceEEEEe
Q 019123 227 KFDAVIASEVIEH-VA-----DP---A-----------EFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 227 ~fDlv~~~~~l~~-~~-----~~---~-----------~~l~~~~r~LkpgG~~~~~~ 264 (346)
.+|+++.+.++.. .. +. . .+++.+...++.+|.+++..
T Consensus 343 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~is 400 (520)
T PRK06484 343 RLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLG 400 (520)
T ss_pred CCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEEC
Confidence 6899987655421 11 11 1 23555566666778776653
No 422
>PRK12829 short chain dehydrogenase; Provisional
Probab=79.26 E-value=14 Score=32.66 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=47.8
Q ss_pred CCCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cC
Q 019123 159 FEGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQ 225 (346)
Q Consensus 159 ~~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~ 225 (346)
.++.+||=.|++.| .++..|+++|++|++++.++..++...+.... .++.++.+|+.+... .-
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG----AKVTATVADVADPAQVERVFDTAVERF 84 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc----CceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 36678998876543 23445566699999999988766655443321 146778888765421 11
Q ss_pred CceeEEEecchh
Q 019123 226 RKFDAVIASEVI 237 (346)
Q Consensus 226 ~~fDlv~~~~~l 237 (346)
+.+|+|+...+.
T Consensus 85 ~~~d~vi~~ag~ 96 (264)
T PRK12829 85 GGLDVLVNNAGI 96 (264)
T ss_pred CCCCEEEECCCC
Confidence 468999876543
No 423
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=79.21 E-value=5.3 Score=34.47 Aligned_cols=24 Identities=17% Similarity=0.104 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcccCceEEEEecC
Q 019123 243 PAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 243 ~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
...++.+++|+|||||.+++..-.
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~ 58 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDD 58 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-C
T ss_pred HHHHHHHHHhhcCCCeeEEEEecc
Confidence 467899999999999999887543
No 424
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=79.03 E-value=12 Score=34.83 Aligned_cols=99 Identities=19% Similarity=0.272 Sum_probs=55.6
Q ss_pred CCCCCCeEEEECCCC-chhHHHHHHc-CCe-EEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc--ccCCcee-E
Q 019123 157 RPFEGLNIVDVGCGG-GILSEPLARM-GAT-VTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV--EEQRKFD-A 230 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~-v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~fD-l 230 (346)
...++.+||=.|+|. |..+..++.. |.+ |++++.+++.++.+++.-. . .-+.....+...+. .....+| +
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga-~---~~i~~~~~~~~~~~~~~~~~~~d~~ 232 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGA-M---QTFNSREMSAPQIQSVLRELRFDQL 232 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC-c---eEecCcccCHHHHHHHhcCCCCCeE
Confidence 345678888888643 3344444443 775 7999999988887754211 0 00111111111111 1233577 5
Q ss_pred EEecchhcccCCHHHHHHHHHHhcccCceEEEEec
Q 019123 231 VIASEVIEHVADPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 231 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
|+-. ... ...+.++.+.|++||.+++...
T Consensus 233 v~d~-----~G~-~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 233 ILET-----AGV-PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred EEEC-----CCC-HHHHHHHHHHhhcCCEEEEEcc
Confidence 5422 111 3577888899999999888753
No 425
>PLN02740 Alcohol dehydrogenase-like
Probab=78.96 E-value=22 Score=33.76 Aligned_cols=96 Identities=18% Similarity=0.185 Sum_probs=56.8
Q ss_pred CCCCCCeEEEECCC-CchhHHHHHHc-CC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcC-----ccc-cc-ccCC
Q 019123 157 RPFEGLNIVDVGCG-GGILSEPLARM-GA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTT-----AEK-LV-EEQR 226 (346)
Q Consensus 157 ~~~~~~~vLDiG~G-~G~~~~~l~~~-~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d-----~~~-l~-~~~~ 226 (346)
...++.+||=+|+| .|..+..++.. |. .|+++|.+++.++.+++.- . -.++... ..+ +. ...+
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~G----a---~~~i~~~~~~~~~~~~v~~~~~~ 267 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMG----I---TDFINPKDSDKPVHERIREMTGG 267 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcC----C---cEEEecccccchHHHHHHHHhCC
Confidence 45678899999875 23344444443 77 6999999999888886531 1 1122111 111 11 1122
Q ss_pred ceeEEEecchhcccCCHHHHHHHHHHhcccC-ceEEEEec
Q 019123 227 KFDAVIASEVIEHVADPAEFCKSLSALTVSE-GATVISTI 265 (346)
Q Consensus 227 ~fDlv~~~~~l~~~~~~~~~l~~~~r~Lkpg-G~~~~~~~ 265 (346)
.+|+|+-.-+ -...+..+...+++| |.+++...
T Consensus 268 g~dvvid~~G------~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 268 GVDYSFECAG------NVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred CCCEEEECCC------ChHHHHHHHHhhhcCCCEEEEEcc
Confidence 6898875432 235677788889886 88776543
No 426
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.96 E-value=23 Score=30.69 Aligned_cols=74 Identities=18% Similarity=0.120 Sum_probs=46.5
Q ss_pred CCeEEEECCCCchhHH----HHHHcCCeEEEE-cCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cC
Q 019123 161 GLNIVDVGCGGGILSE----PLARMGATVTGI-DAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQ 225 (346)
Q Consensus 161 ~~~vLDiG~G~G~~~~----~l~~~~~~v~gi-D~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~ 225 (346)
+++||=+|+ +|.++. .+++.|++|+.+ +-+++.++.........+ .++.++.+|+.+... .-
T Consensus 5 ~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (247)
T PRK05565 5 GKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEG--GDAIAVKADVSSEEDVENLVEQIVEKF 81 (247)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 456777765 454444 455668899998 888766655444433322 468889999866421 01
Q ss_pred CceeEEEecchh
Q 019123 226 RKFDAVIASEVI 237 (346)
Q Consensus 226 ~~fDlv~~~~~l 237 (346)
+.+|+|+.....
T Consensus 82 ~~id~vi~~ag~ 93 (247)
T PRK05565 82 GKIDILVNNAGI 93 (247)
T ss_pred CCCCEEEECCCc
Confidence 368999876644
No 427
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=78.69 E-value=14 Score=34.02 Aligned_cols=98 Identities=15% Similarity=0.144 Sum_probs=58.5
Q ss_pred CeEEEECCC--CchhHHHHHHcCCeEEEEcCChHHHHHHHHh--hccCCCCCceEEEEcCcccccccCCceeEEEecchh
Q 019123 162 LNIVDVGCG--GGILSEPLARMGATVTGIDAVEKNIKIARLH--ADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVI 237 (346)
Q Consensus 162 ~~vLDiG~G--~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~--~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l 237 (346)
++|+=+|+| -|.++..|++.|.+|+.++-+.+.++..++. +.-... .....+...... +.+...||+|++.-=-
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~-g~~~~~~~~~~~-~~~~~~~D~viv~vK~ 80 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQ-GQASLYAIPAET-ADAAEPIHRLLLACKA 80 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeC-CcceeeccCCCC-cccccccCEEEEECCH
Confidence 478889988 3467888888899999999987666655432 111000 111111111111 1123478988875321
Q ss_pred cccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 238 EHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 238 ~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
. +...+++.+...+.++..+++..
T Consensus 81 ~---~~~~al~~l~~~l~~~t~vv~lQ 104 (305)
T PRK05708 81 Y---DAEPAVASLAHRLAPGAELLLLQ 104 (305)
T ss_pred H---hHHHHHHHHHhhCCCCCEEEEEe
Confidence 1 45678889999999988766654
No 428
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=78.36 E-value=20 Score=31.29 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=46.7
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~~ 226 (346)
.+++||=.|++.| .++..++++|++|++++-++. ....+.....+ .++.++.+|+.+... ..+
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEEFG 79 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 5678888888655 356667777999999997642 22222222222 457888888865420 124
Q ss_pred ceeEEEecchh
Q 019123 227 KFDAVIASEVI 237 (346)
Q Consensus 227 ~fDlv~~~~~l 237 (346)
..|+++.+...
T Consensus 80 ~~d~li~~ag~ 90 (248)
T TIGR01832 80 HIDILVNNAGI 90 (248)
T ss_pred CCCEEEECCCC
Confidence 68999876654
No 429
>PRK12742 oxidoreductase; Provisional
Probab=78.32 E-value=33 Score=29.66 Aligned_cols=98 Identities=13% Similarity=0.108 Sum_probs=54.1
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcC-ChHHHHHHHHhhccCCCCCceEEEEcCccccc------ccCCcee
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDA-VEKNIKIARLHADLDPETSTIEYCCTTAEKLV------EEQRKFD 229 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~-s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~------~~~~~fD 229 (346)
.+++||=.|++.| .++..+++.|++|+.+.. +++.++...... .+.++..|+.+.. ...+.+|
T Consensus 5 ~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~-------~~~~~~~D~~~~~~~~~~~~~~~~id 77 (237)
T PRK12742 5 TGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQET-------GATAVQTDSADRDAVIDVVRKSGALD 77 (237)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHh-------CCeEEecCCCCHHHHHHHHHHhCCCc
Confidence 4568887776444 245556667889887765 344444332221 2456667765432 1224689
Q ss_pred EEEecchhcccCC-----HH--------------HHHHHHHHhcccCceEEEEe
Q 019123 230 AVIASEVIEHVAD-----PA--------------EFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 230 lv~~~~~l~~~~~-----~~--------------~~l~~~~r~LkpgG~~~~~~ 264 (346)
+++.+.......+ ++ .+++.+.+.++++|.+++..
T Consensus 78 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 131 (237)
T PRK12742 78 ILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIG 131 (237)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 8887755432211 11 12355666677777766643
No 430
>PRK12744 short chain dehydrogenase; Provisional
Probab=77.63 E-value=25 Score=30.95 Aligned_cols=102 Identities=14% Similarity=0.054 Sum_probs=56.8
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCC----hHHHHHHHHhhccCCCCCceEEEEcCcccccc---------
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAV----EKNIKIARLHADLDPETSTIEYCCTTAEKLVE--------- 223 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s----~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~--------- 223 (346)
.+++||=.|++.| .++..|++.|.+|+.++.+ .+.++...+.....+ .++.++.+|+.+...
T Consensus 7 ~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 7 KGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAG--AKAVAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhC--CcEEEEecCcCCHHHHHHHHHHHH
Confidence 4568888876555 3455566668887777543 223333222222222 467888889865420
Q ss_pred -cCCceeEEEecchhccc-----CCHH--------------HHHHHHHHhcccCceEEEE
Q 019123 224 -EQRKFDAVIASEVIEHV-----ADPA--------------EFCKSLSALTVSEGATVIS 263 (346)
Q Consensus 224 -~~~~fDlv~~~~~l~~~-----~~~~--------------~~l~~~~r~LkpgG~~~~~ 263 (346)
.-+..|+++.+.++... .+.+ .+++.+...++++|.+++.
T Consensus 85 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~ 144 (257)
T PRK12744 85 AAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTL 144 (257)
T ss_pred HhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEE
Confidence 12468999877654211 1111 2456666777777765543
No 431
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.52 E-value=37 Score=29.97 Aligned_cols=73 Identities=16% Similarity=0.059 Sum_probs=46.3
Q ss_pred CCCeEEEECCCC--c---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc----------cc
Q 019123 160 EGLNIVDVGCGG--G---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV----------EE 224 (346)
Q Consensus 160 ~~~~vLDiG~G~--G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~----------~~ 224 (346)
.++.+|-.|+++ | .++..|++.|++|+.++.+....+...+. .. .++.++.+|+.+.. ..
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~-~~----~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKL-VD----EEDLLVECDVASDESIERAFATIKER 80 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhh-cc----CceeEEeCCCCCHHHHHHHHHHHHHH
Confidence 567888888762 3 35666777799999998774433333222 11 35778888886532 01
Q ss_pred CCceeEEEecchh
Q 019123 225 QRKFDAVIASEVI 237 (346)
Q Consensus 225 ~~~fDlv~~~~~l 237 (346)
-+.+|+++.+.++
T Consensus 81 ~g~iD~lv~nAg~ 93 (252)
T PRK06079 81 VGKIDGIVHAIAY 93 (252)
T ss_pred hCCCCEEEEcccc
Confidence 2578999987654
No 432
>PRK06114 short chain dehydrogenase; Provisional
Probab=77.51 E-value=39 Score=29.70 Aligned_cols=77 Identities=17% Similarity=0.172 Sum_probs=46.8
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChH-HHHHHHHhhccCCCCCceEEEEcCccccc----------ccC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEK-NIKIARLHADLDPETSTIEYCCTTAEKLV----------EEQ 225 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~-~l~~a~~~~~~~~~~~~v~~~~~d~~~l~----------~~~ 225 (346)
.++.+|=.|++.| .++..|++.|++|++++.+.. .++...+.+...+ .++.++.+|+.+.. ..-
T Consensus 7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 84 (254)
T PRK06114 7 DGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAG--RRAIQIAADVTSKADLRAAVARTEAEL 84 (254)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4567887775555 345556667999999997643 3343333333222 45778888875532 112
Q ss_pred CceeEEEecchhc
Q 019123 226 RKFDAVIASEVIE 238 (346)
Q Consensus 226 ~~fDlv~~~~~l~ 238 (346)
+..|+++.+..+.
T Consensus 85 g~id~li~~ag~~ 97 (254)
T PRK06114 85 GALTLAVNAAGIA 97 (254)
T ss_pred CCCCEEEECCCCC
Confidence 5689998776553
No 433
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.35 E-value=27 Score=30.92 Aligned_cols=75 Identities=15% Similarity=0.058 Sum_probs=46.0
Q ss_pred CCCeEEEECCCC--c---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc----------cc
Q 019123 160 EGLNIVDVGCGG--G---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV----------EE 224 (346)
Q Consensus 160 ~~~~vLDiG~G~--G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~----------~~ 224 (346)
.++.+|-.|+++ | .++..+++.|++|+.++.+....+...+..... ..+.++.+|+.+.. ..
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL---DAPIFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh---ccceEEecCcCCHHHHHHHHHHHHHH
Confidence 567889999764 2 355566777999999998865433333222211 12446777875532 11
Q ss_pred CCceeEEEecchh
Q 019123 225 QRKFDAVIASEVI 237 (346)
Q Consensus 225 ~~~fDlv~~~~~l 237 (346)
-+..|+++.+.++
T Consensus 86 ~g~ld~lv~nAg~ 98 (258)
T PRK07533 86 WGRLDFLLHSIAF 98 (258)
T ss_pred cCCCCEEEEcCcc
Confidence 2578999987654
No 434
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=77.33 E-value=8.4 Score=37.27 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=29.4
Q ss_pred CeEEEECCCCc--hhHHHHHHcCCeEEEEcCChHHHHHHH
Q 019123 162 LNIVDVGCGGG--ILSEPLARMGATVTGIDAVEKNIKIAR 199 (346)
Q Consensus 162 ~~vLDiG~G~G--~~~~~l~~~~~~v~giD~s~~~l~~a~ 199 (346)
++|.=||.|.- .++..|++.|.+|+++|++++.++..+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~ 43 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTIN 43 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence 46777888854 456667788999999999998887643
No 435
>PRK05855 short chain dehydrogenase; Validated
Probab=77.15 E-value=19 Score=35.92 Aligned_cols=78 Identities=21% Similarity=0.139 Sum_probs=52.3
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~~ 226 (346)
.+.++|=+|+..| .++..|++.|.+|++++.+...++...+.+...+ .++.++.+|+.+... ..+
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 391 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAG--AVAHAYRVDVSDADAMEAFAEWVRAEHG 391 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 4567887776444 3555666779999999999877766555444333 468888899866421 124
Q ss_pred ceeEEEecchhcc
Q 019123 227 KFDAVIASEVIEH 239 (346)
Q Consensus 227 ~fDlv~~~~~l~~ 239 (346)
.+|+++.+.++.+
T Consensus 392 ~id~lv~~Ag~~~ 404 (582)
T PRK05855 392 VPDIVVNNAGIGM 404 (582)
T ss_pred CCcEEEECCccCC
Confidence 6899998776643
No 436
>PRK06197 short chain dehydrogenase; Provisional
Probab=76.94 E-value=17 Score=33.23 Aligned_cols=78 Identities=18% Similarity=0.101 Sum_probs=48.5
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~~ 226 (346)
.+++||=.|+..| .++..|+++|++|++++.+.+..+.+.+.+.......++.++.+|+.+... .-+
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~ 94 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAYP 94 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhCC
Confidence 5667886665433 244455567899999998877665554443321112467888899866430 124
Q ss_pred ceeEEEecchh
Q 019123 227 KFDAVIASEVI 237 (346)
Q Consensus 227 ~fDlv~~~~~l 237 (346)
.+|+++.+.++
T Consensus 95 ~iD~li~nAg~ 105 (306)
T PRK06197 95 RIDLLINNAGV 105 (306)
T ss_pred CCCEEEECCcc
Confidence 68999887654
No 437
>PRK08251 short chain dehydrogenase; Provisional
Probab=76.76 E-value=16 Score=31.95 Aligned_cols=76 Identities=13% Similarity=0.100 Sum_probs=48.0
Q ss_pred CeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cCCce
Q 019123 162 LNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQRKF 228 (346)
Q Consensus 162 ~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~~~f 228 (346)
+++|=.|+..| .++..+++.|.+|+.++.++..++.....+.......++.++.+|+.+... .-+..
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 82 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGGL 82 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 46776665433 244455566889999999987776655544332112468888899876420 12468
Q ss_pred eEEEecchh
Q 019123 229 DAVIASEVI 237 (346)
Q Consensus 229 Dlv~~~~~l 237 (346)
|+|+.+.++
T Consensus 83 d~vi~~ag~ 91 (248)
T PRK08251 83 DRVIVNAGI 91 (248)
T ss_pred CEEEECCCc
Confidence 988877654
No 438
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=76.62 E-value=14 Score=32.29 Aligned_cols=79 Identities=18% Similarity=0.151 Sum_probs=48.1
Q ss_pred CCCCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccc------------c
Q 019123 158 PFEGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKL------------V 222 (346)
Q Consensus 158 ~~~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l------------~ 222 (346)
..++++||=.|+..| .++..|++.|++|++++.++..++...+.+...+. .++.++..|+... .
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHHHH
Confidence 346778888886444 34445566688999999998766555444433221 3466666666421 0
Q ss_pred ccCCceeEEEecchh
Q 019123 223 EEQRKFDAVIASEVI 237 (346)
Q Consensus 223 ~~~~~fDlv~~~~~l 237 (346)
..-+..|.|+.+...
T Consensus 88 ~~~~~id~vi~~Ag~ 102 (247)
T PRK08945 88 EQFGRLDGVLHNAGL 102 (247)
T ss_pred HHhCCCCEEEECCcc
Confidence 112468988876543
No 439
>PRK07890 short chain dehydrogenase; Provisional
Probab=76.53 E-value=13 Score=32.80 Aligned_cols=76 Identities=20% Similarity=0.139 Sum_probs=50.3
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~~ 226 (346)
.+++||=.|++.| .++..++++|++|++++.++..++.....+...+ .++.++..|+.+... .-+
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 4567887776554 3555667779999999999877666555443322 457888888855320 114
Q ss_pred ceeEEEecchh
Q 019123 227 KFDAVIASEVI 237 (346)
Q Consensus 227 ~fDlv~~~~~l 237 (346)
..|+|+.+.+.
T Consensus 82 ~~d~vi~~ag~ 92 (258)
T PRK07890 82 RVDALVNNAFR 92 (258)
T ss_pred CccEEEECCcc
Confidence 68998876654
No 440
>PRK06182 short chain dehydrogenase; Validated
Probab=76.52 E-value=35 Score=30.42 Aligned_cols=71 Identities=14% Similarity=0.110 Sum_probs=44.8
Q ss_pred CCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cCCc
Q 019123 161 GLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQRK 227 (346)
Q Consensus 161 ~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~~~ 227 (346)
++.||=.|++.| .++..+++.|++|++++-+++.++.... .++.++.+|+.+... ..+.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~--------~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~ 74 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS--------LGVHPLSLDVTDEASIKAAVDTIIAEEGR 74 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh--------CCCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 457787775444 2444555668999999988776654321 236677888765421 1246
Q ss_pred eeEEEecchhcc
Q 019123 228 FDAVIASEVIEH 239 (346)
Q Consensus 228 fDlv~~~~~l~~ 239 (346)
+|+++.+.++..
T Consensus 75 id~li~~ag~~~ 86 (273)
T PRK06182 75 IDVLVNNAGYGS 86 (273)
T ss_pred CCEEEECCCcCC
Confidence 899998776543
No 441
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.39 E-value=12 Score=34.07 Aligned_cols=98 Identities=17% Similarity=0.126 Sum_probs=57.9
Q ss_pred CeEEEECCCCc--hhHHHHHHcCCeEEEEcCChHHHHHHHHhhcc--------CCC---------CCceEEEEcCccccc
Q 019123 162 LNIVDVGCGGG--ILSEPLARMGATVTGIDAVEKNIKIARLHADL--------DPE---------TSTIEYCCTTAEKLV 222 (346)
Q Consensus 162 ~~vLDiG~G~G--~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~--------~~~---------~~~v~~~~~d~~~l~ 222 (346)
.+|.=||+|.- .++..++..|.+|+++|.+++.++.+++.+.. ..+ ..++.+. .|..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a- 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEA- 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHH-
Confidence 36788898853 46667777899999999999988877654311 011 0123322 232221
Q ss_pred ccCCceeEEEecchhcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 223 EEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 223 ~~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
-...|+|+..-. ....-...+++++...++++-++....
T Consensus 82 --~~~aDlVieavp-e~~~~k~~~~~~l~~~~~~~~ii~snt 120 (287)
T PRK08293 82 --VKDADLVIEAVP-EDPEIKGDFYEELAKVAPEKTIFATNS 120 (287)
T ss_pred --hcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCCEEEECc
Confidence 134688876532 111123567888888888776554433
No 442
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=76.21 E-value=13 Score=33.23 Aligned_cols=75 Identities=19% Similarity=0.144 Sum_probs=49.7
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~~ 226 (346)
.++.+|=.|++.| .++..|++.|++|+.++.+++.++...+.+...+ .++.++.+|+.+... .-+
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 86 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAG--GEALAVKADVLDKESLEQARQQILEDFG 86 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4567887776554 3556666779999999998876665554443322 457888888865420 124
Q ss_pred ceeEEEecch
Q 019123 227 KFDAVIASEV 236 (346)
Q Consensus 227 ~fDlv~~~~~ 236 (346)
.+|+++.+..
T Consensus 87 ~id~li~~ag 96 (278)
T PRK08277 87 PCDILINGAG 96 (278)
T ss_pred CCCEEEECCC
Confidence 6899987654
No 443
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=76.09 E-value=21 Score=30.90 Aligned_cols=67 Identities=22% Similarity=0.170 Sum_probs=41.8
Q ss_pred CCCeEEEECCCCc--hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEec
Q 019123 160 EGLNIVDVGCGGG--ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIAS 234 (346)
Q Consensus 160 ~~~~vLDiG~G~G--~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~ 234 (346)
.+.+||=||+|.= .-+..|++.|++|+.++.... +........ .++.++..+...-.. ..+|+|++.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~--~~l~~l~~~----~~i~~~~~~~~~~dl--~~~~lVi~a 76 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE--SELTLLAEQ----GGITWLARCFDADIL--EGAFLVIAA 76 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC--HHHHHHHHc----CCEEEEeCCCCHHHh--CCcEEEEEC
Confidence 5679999999864 235566778999999976542 111111111 357888777653322 357888775
No 444
>PRK06139 short chain dehydrogenase; Provisional
Probab=75.67 E-value=13 Score=34.73 Aligned_cols=76 Identities=16% Similarity=0.136 Sum_probs=52.0
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~~ 226 (346)
.++.||=.|++.| .++..+++.|++|+.++.+++.++...+.+...+ .++.++.+|+.+... ..+
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 4567887777555 3556667779999999999888876666554433 457777788754320 125
Q ss_pred ceeEEEecchh
Q 019123 227 KFDAVIASEVI 237 (346)
Q Consensus 227 ~fDlv~~~~~l 237 (346)
.+|+++.+..+
T Consensus 84 ~iD~lVnnAG~ 94 (330)
T PRK06139 84 RIDVWVNNVGV 94 (330)
T ss_pred CCCEEEECCCc
Confidence 68999987654
No 445
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=75.62 E-value=5.8 Score=32.29 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=29.9
Q ss_pred EECCCCc--hhHHHHHH--c--CCeEEEEcCChHHHHHHHHh--hccCCCCCceEEEEcC
Q 019123 166 DVGCGGG--ILSEPLAR--M--GATVTGIDAVEKNIKIARLH--ADLDPETSTIEYCCTT 217 (346)
Q Consensus 166 DiG~G~G--~~~~~l~~--~--~~~v~giD~s~~~l~~a~~~--~~~~~~~~~v~~~~~d 217 (346)
|||++.| .....++. . +.+|+++|+++...+..+.+ +.-+.....++++...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~ 60 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYA 60 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEee
Confidence 8999999 55554432 2 55899999999999988888 3333221235555443
No 446
>PRK06940 short chain dehydrogenase; Provisional
Probab=75.43 E-value=26 Score=31.52 Aligned_cols=96 Identities=17% Similarity=0.182 Sum_probs=55.5
Q ss_pred eEEEECCCCchhHHHHHH---cCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-----c----cCCceeE
Q 019123 163 NIVDVGCGGGILSEPLAR---MGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-----E----EQRKFDA 230 (346)
Q Consensus 163 ~vLDiG~G~G~~~~~l~~---~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~----~~~~fDl 230 (346)
.+|=.|+ |.++..++. .|.+|+++|.+++.++...+.+...+ .++.++.+|+.+.. . ..+.+|+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence 4454454 345444433 58899999998876665554443322 35778888886532 1 1256899
Q ss_pred EEecchhccc-CCHH-----------HHHHHHHHhcccCceEEE
Q 019123 231 VIASEVIEHV-ADPA-----------EFCKSLSALTVSEGATVI 262 (346)
Q Consensus 231 v~~~~~l~~~-~~~~-----------~~l~~~~r~LkpgG~~~~ 262 (346)
++.+.++... .++. .+++.+...++++|.+++
T Consensus 80 li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~ 123 (275)
T PRK06940 80 LVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVV 123 (275)
T ss_pred EEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEE
Confidence 9877665322 1222 245566666666665444
No 447
>PRK07677 short chain dehydrogenase; Provisional
Probab=75.32 E-value=13 Score=32.74 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=48.5
Q ss_pred CeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cCCce
Q 019123 162 LNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQRKF 228 (346)
Q Consensus 162 ~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~~~f 228 (346)
+++|=.|++.| .++..++++|.+|++++.++..++...+.+...+ .++.++.+|+.+... .-+..
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 46777777655 3566667779999999998877766655443322 467888888755320 12468
Q ss_pred eEEEecch
Q 019123 229 DAVIASEV 236 (346)
Q Consensus 229 Dlv~~~~~ 236 (346)
|+++.+.+
T Consensus 80 d~lI~~ag 87 (252)
T PRK07677 80 DALINNAA 87 (252)
T ss_pred cEEEECCC
Confidence 99887654
No 448
>PRK06172 short chain dehydrogenase; Provisional
Probab=75.28 E-value=14 Score=32.38 Aligned_cols=76 Identities=14% Similarity=0.069 Sum_probs=51.0
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-----c-----cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-----E-----EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~~~ 226 (346)
.+++||=.|++.| .++..+++.|++|++++-+++.++...+.+...+ .++.++.+|+.+.. + .-+
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 4578888887554 3555666779999999999877665554443332 46888888886532 0 124
Q ss_pred ceeEEEecchh
Q 019123 227 KFDAVIASEVI 237 (346)
Q Consensus 227 ~fDlv~~~~~l 237 (346)
.+|+|+.+.+.
T Consensus 84 ~id~li~~ag~ 94 (253)
T PRK06172 84 RLDYAFNNAGI 94 (253)
T ss_pred CCCEEEECCCC
Confidence 67999977654
No 449
>PRK06125 short chain dehydrogenase; Provisional
Probab=75.25 E-value=18 Score=31.93 Aligned_cols=77 Identities=10% Similarity=0.113 Sum_probs=50.5
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc------ccCCceeE
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV------EEQRKFDA 230 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~------~~~~~fDl 230 (346)
.+++||=.|++.| .++..++++|++|++++.+++.++.....+.... ..++.++.+|+.+.. ..-+..|+
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 4568888887554 3455667779999999999887766555443221 145778888876532 11256899
Q ss_pred EEecchh
Q 019123 231 VIASEVI 237 (346)
Q Consensus 231 v~~~~~l 237 (346)
++.+.+.
T Consensus 85 lv~~ag~ 91 (259)
T PRK06125 85 LVNNAGA 91 (259)
T ss_pred EEECCCC
Confidence 8876544
No 450
>PRK08278 short chain dehydrogenase; Provisional
Probab=75.22 E-value=28 Score=31.17 Aligned_cols=76 Identities=13% Similarity=0.072 Sum_probs=47.0
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHH-------HHHHHHhhccCCCCCceEEEEcCccccc-----c-
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKN-------IKIARLHADLDPETSTIEYCCTTAEKLV-----E- 223 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~-------l~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~- 223 (346)
.++++|=.|++.| .++..++++|++|++++.+... ++...+.+...+ .++.++.+|+.+.. +
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~ 82 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAG--GQALPLVGDVRDEDQVAAAVA 82 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHH
Confidence 4567887777655 3556667779999999976531 332323332222 46778888875542 1
Q ss_pred ----cCCceeEEEecchh
Q 019123 224 ----EQRKFDAVIASEVI 237 (346)
Q Consensus 224 ----~~~~fDlv~~~~~l 237 (346)
.-+.+|+++.+..+
T Consensus 83 ~~~~~~g~id~li~~ag~ 100 (273)
T PRK08278 83 KAVERFGGIDICVNNASA 100 (273)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 11468999977654
No 451
>PRK08339 short chain dehydrogenase; Provisional
Probab=74.93 E-value=15 Score=32.80 Aligned_cols=77 Identities=22% Similarity=0.172 Sum_probs=52.3
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-----c----cCCc
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-----E----EQRK 227 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~----~~~~ 227 (346)
.++.+|=.|++.| .++..|+++|++|+.++.+++.++...+.+.... ..++.++.+|+.+.. . .-+.
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 4667888887666 3666777889999999999877766655443221 146788888886542 0 1246
Q ss_pred eeEEEecchh
Q 019123 228 FDAVIASEVI 237 (346)
Q Consensus 228 fDlv~~~~~l 237 (346)
.|+++.+.++
T Consensus 86 iD~lv~nag~ 95 (263)
T PRK08339 86 PDIFFFSTGG 95 (263)
T ss_pred CcEEEECCCC
Confidence 8988876554
No 452
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=74.79 E-value=22 Score=33.42 Aligned_cols=96 Identities=20% Similarity=0.187 Sum_probs=53.0
Q ss_pred CCCCeEEEECCC-CchhHHHHHHc-CCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecch
Q 019123 159 FEGLNIVDVGCG-GGILSEPLARM-GATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEV 236 (346)
Q Consensus 159 ~~~~~vLDiG~G-~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~ 236 (346)
.++.+||=+|+| .|..+..+++. |.++++++.+++....+.+.+.. . ..+...+...+......+|+|+-.-.
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga----~-~~i~~~~~~~~~~~~~~~D~vid~~g 253 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGA----D-DYLVSSDAAEMQEAADSLDYIIDTVP 253 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCC----c-EEecCCChHHHHHhcCCCcEEEECCC
Confidence 466788877653 34445555554 77899898887766555443321 1 00111111111111124787774321
Q ss_pred hcccCCHHHHHHHHHHhcccCceEEEEec
Q 019123 237 IEHVADPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 237 l~~~~~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
....+..+.+.|++||.++....
T Consensus 254 ------~~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 254 ------VFHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred ------chHHHHHHHHHhccCCEEEEECC
Confidence 12467778889999998887643
No 453
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=74.75 E-value=20 Score=32.67 Aligned_cols=99 Identities=17% Similarity=0.115 Sum_probs=58.8
Q ss_pred CeEEEECCCCc--hhHHHHHHcCCeEEEEcCChHHHHHHHHhhcc-------CC-CC--------CceEEEEcCcccccc
Q 019123 162 LNIVDVGCGGG--ILSEPLARMGATVTGIDAVEKNIKIARLHADL-------DP-ET--------STIEYCCTTAEKLVE 223 (346)
Q Consensus 162 ~~vLDiG~G~G--~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~-------~~-~~--------~~v~~~~~d~~~l~~ 223 (346)
.+|.=||+|.- .++..++..|.+|+.+|.+++.++.+.+.+.. .+ +. .++.+. .+.+.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~-- 81 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLEDL-- 81 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHHHh--
Confidence 46888898853 46777778899999999999888775543221 11 10 123222 233221
Q ss_pred cCCceeEEEecchhcccCCHHHHHHHHHHhcccCceEEEEecC
Q 019123 224 EQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTIN 266 (346)
Q Consensus 224 ~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~ 266 (346)
...|+|+..- .....-...+++++...++|+.+++..+.+
T Consensus 82 --~~aD~Vieav-pe~~~~k~~~~~~l~~~~~~~~ii~s~ts~ 121 (292)
T PRK07530 82 --ADCDLVIEAA-TEDETVKRKIFAQLCPVLKPEAILATNTSS 121 (292)
T ss_pred --cCCCEEEEcC-cCCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 2468887642 111111346778888899998877644433
No 454
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=74.61 E-value=38 Score=32.51 Aligned_cols=101 Identities=15% Similarity=0.105 Sum_probs=58.9
Q ss_pred CCCCCCeEEEEC--CCCchhHHHHHHc-C--C-eEEEEcCChHHHHHHHHhhccCCC--CCceEEEEc----Cccc-cc-
Q 019123 157 RPFEGLNIVDVG--CGGGILSEPLARM-G--A-TVTGIDAVEKNIKIARLHADLDPE--TSTIEYCCT----TAEK-LV- 222 (346)
Q Consensus 157 ~~~~~~~vLDiG--~G~G~~~~~l~~~-~--~-~v~giD~s~~~l~~a~~~~~~~~~--~~~v~~~~~----d~~~-l~- 222 (346)
...++.+||=+| ++.|..+..++.. | . +|+++|.+++.++.+++....... .....++.. +..+ +.
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~ 251 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLME 251 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHH
Confidence 445677888886 4467777777775 3 2 799999999999988775321100 001111211 1111 10
Q ss_pred -ccCCceeEEEecchhcccCCHHHHHHHHHHhcccCceEEEE
Q 019123 223 -EEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVIS 263 (346)
Q Consensus 223 -~~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~ 263 (346)
.....+|+|+..-. . ...+..+.+.|+++|.+++.
T Consensus 252 ~t~g~g~D~vid~~g-----~-~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 252 LTGGQGFDDVFVFVP-----V-PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HhCCCCCCEEEEcCC-----C-HHHHHHHHHHhccCCeEEEE
Confidence 12335888875321 1 35677888999988865543
No 455
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=74.51 E-value=36 Score=31.66 Aligned_cols=98 Identities=17% Similarity=0.219 Sum_probs=57.1
Q ss_pred CCCCCCeEEEECCC-CchhHHHHHHc-CC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCc-ccc-cc-cCCceeE
Q 019123 157 RPFEGLNIVDVGCG-GGILSEPLARM-GA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTA-EKL-VE-EQRKFDA 230 (346)
Q Consensus 157 ~~~~~~~vLDiG~G-~G~~~~~l~~~-~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~-~~l-~~-~~~~fDl 230 (346)
...++.+||=.|+| .|..+..++.. |. .|+++|.+++.++.+++. +...-+.....+. ..+ .. ....+|+
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY----GATDIVDYKNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCceEecCCCCCHHHHHHHHhCCCCCcE
Confidence 44567888888765 33444555544 66 599999998887777652 1100011111111 111 11 2346898
Q ss_pred EEecchhcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 231 VIASEVIEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 231 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
|+.... . ...+..+.+.|+++|.++...
T Consensus 239 vld~~g-----~-~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 239 VIIAGG-----G-QDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred EEECCC-----C-HHHHHHHHHHhhcCCEEEEec
Confidence 885321 1 356788999999999988654
No 456
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=74.48 E-value=9.5 Score=39.87 Aligned_cols=100 Identities=14% Similarity=0.084 Sum_probs=66.1
Q ss_pred CeEEEECCCC--chhHHHHHHcCCeEEEEcCChHHHHHHHHhhccC-------C-C--------CCceEEEEcCcccccc
Q 019123 162 LNIVDVGCGG--GILSEPLARMGATVTGIDAVEKNIKIARLHADLD-------P-E--------TSTIEYCCTTAEKLVE 223 (346)
Q Consensus 162 ~~vLDiG~G~--G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~-------~-~--------~~~v~~~~~d~~~l~~ 223 (346)
.+|--||+|+ +.++..++..|.+|+.+|.+++.++.+.+++... + + ..++.+. .|...+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~-- 412 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSGF-- 412 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHHh--
Confidence 5799999996 3577777888999999999999998876654321 1 1 0123322 222221
Q ss_pred cCCceeEEEecchhcccCCHHHHHHHHHHhcccCceEEEEecCc
Q 019123 224 EQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTINR 267 (346)
Q Consensus 224 ~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~ 267 (346)
...|+|+=. +.+.+.-..++++++.++++|+.+|.-.+.+.
T Consensus 413 --~~aDlViEA-v~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl 453 (737)
T TIGR02441 413 --KNADMVIEA-VFEDLSLKHKVIKEVEAVVPPHCIIASNTSAL 453 (737)
T ss_pred --ccCCeehhh-ccccHHHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 246766532 34444445689999999999999888766543
No 457
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=74.34 E-value=35 Score=28.30 Aligned_cols=90 Identities=18% Similarity=0.099 Sum_probs=40.8
Q ss_pred CCCeEEEECCCCchhHHH-HHHcCC--eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecch
Q 019123 160 EGLNIVDVGCGGGILSEP-LARMGA--TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEV 236 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~-l~~~~~--~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~ 236 (346)
.+.+|.=.|+|....++. ++..+. =...+|.++ .+.....+...+-..+.+.+. ....|+|++...
T Consensus 67 ~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np---------~K~G~~~PGt~ipI~~p~~l~--~~~pd~vivlaw 135 (160)
T PF08484_consen 67 EGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNP---------LKQGKYLPGTHIPIVSPEELK--ERKPDYVIVLAW 135 (160)
T ss_dssp TT--EEEE---SHHHHHHHHHT--TTTS--EEES-G---------GGTTEE-TTT--EEEEGGG----SS--SEEEES-G
T ss_pred cCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCCh---------hhcCcccCCCCCeECCHHHHh--hCCCCEEEEcCh
Confidence 567899999998776543 333322 256789887 222111121222222233332 345688766421
Q ss_pred hcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 237 IEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 237 l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
.-.+++++.+...++.||.|++-.
T Consensus 136 ----~y~~EI~~~~~~~~~~gg~fi~pl 159 (160)
T PF08484_consen 136 ----NYKDEIIEKLREYLERGGKFIVPL 159 (160)
T ss_dssp ----GGHHHHHHHTHHHHHTT-EEEE-S
T ss_pred ----hhHHHHHHHHHHHHhcCCEEEEeC
Confidence 124678888888899999999753
No 458
>PRK12743 oxidoreductase; Provisional
Probab=74.18 E-value=37 Score=29.92 Aligned_cols=74 Identities=12% Similarity=0.008 Sum_probs=45.0
Q ss_pred CeEEEECCCCc---hhHHHHHHcCCeEEEEcC-ChHHHHHHHHhhccCCCCCceEEEEcCccccc----------ccCCc
Q 019123 162 LNIVDVGCGGG---ILSEPLARMGATVTGIDA-VEKNIKIARLHADLDPETSTIEYCCTTAEKLV----------EEQRK 227 (346)
Q Consensus 162 ~~vLDiG~G~G---~~~~~l~~~~~~v~giD~-s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~----------~~~~~ 227 (346)
++||=.|++.| .++..++++|++|+.+.. +...++...+.+...+ .++.++.+|+.+.. ..-+.
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQRLGR 80 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 46777776554 345555667999988753 4444544444333332 46888888886532 01246
Q ss_pred eeEEEecchh
Q 019123 228 FDAVIASEVI 237 (346)
Q Consensus 228 fDlv~~~~~l 237 (346)
.|+++++...
T Consensus 81 id~li~~ag~ 90 (256)
T PRK12743 81 IDVLVNNAGA 90 (256)
T ss_pred CCEEEECCCC
Confidence 8999876654
No 459
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.09 E-value=37 Score=30.10 Aligned_cols=74 Identities=18% Similarity=0.056 Sum_probs=45.6
Q ss_pred CCCeEEEECCC----Cc-hhHHHHHHcCCeEEEEcCCh---HHHHHHHHhhccCCCCCceEEEEcCccccc---------
Q 019123 160 EGLNIVDVGCG----GG-ILSEPLARMGATVTGIDAVE---KNIKIARLHADLDPETSTIEYCCTTAEKLV--------- 222 (346)
Q Consensus 160 ~~~~vLDiG~G----~G-~~~~~l~~~~~~v~giD~s~---~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~--------- 222 (346)
.++.+|=.|++ .| .++..|++.|++|+.++.+. +.++...+... + .++.++.+|+.+..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~--~--~~~~~~~~Dv~d~~~v~~~~~~~ 81 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE--G--QESLLLPCDVTSDEEITACFETI 81 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC--C--CceEEEecCCCCHHHHHHHHHHH
Confidence 46788989875 33 35666667799999887543 33443333222 1 45778888886542
Q ss_pred -ccCCceeEEEecchh
Q 019123 223 -EEQRKFDAVIASEVI 237 (346)
Q Consensus 223 -~~~~~fDlv~~~~~l 237 (346)
..-+.+|+++.+..+
T Consensus 82 ~~~~g~ld~lv~nag~ 97 (257)
T PRK08594 82 KEEVGVIHGVAHCIAF 97 (257)
T ss_pred HHhCCCccEEEECccc
Confidence 012678998876544
No 460
>PRK05876 short chain dehydrogenase; Provisional
Probab=74.02 E-value=15 Score=33.07 Aligned_cols=76 Identities=21% Similarity=0.156 Sum_probs=51.0
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~~ 226 (346)
.++.+|=.|++.| .++..|+..|++|+.+|.++..++...+.+...+ .++.++.+|+.+... .-+
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 4567887776655 3555666779999999999877766555444332 357788888865420 124
Q ss_pred ceeEEEecchh
Q 019123 227 KFDAVIASEVI 237 (346)
Q Consensus 227 ~fDlv~~~~~l 237 (346)
..|+++.+.++
T Consensus 83 ~id~li~nAg~ 93 (275)
T PRK05876 83 HVDVVFSNAGI 93 (275)
T ss_pred CCCEEEECCCc
Confidence 68999887665
No 461
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=74.00 E-value=34 Score=31.08 Aligned_cols=97 Identities=18% Similarity=0.111 Sum_probs=55.1
Q ss_pred eEEEECCCCc--hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccccCCceeEEEecchhccc
Q 019123 163 NIVDVGCGGG--ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEEQRKFDAVIASEVIEHV 240 (346)
Q Consensus 163 ~vLDiG~G~G--~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~fDlv~~~~~l~~~ 240 (346)
+|+=||+|.- .++..|++.|.+|+.++.+++.++..++.-.... .........-..+.. +...+|+|++.---
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~-~~~~~d~vila~k~--- 76 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLE-DGEITVPVLAADDPA-ELGPQDLVILAVKA--- 76 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCccc-CCceeecccCCCChh-HcCCCCEEEEeccc---
Confidence 5788888743 4666677778999999987776665544211000 011110000011111 12568988875432
Q ss_pred CCHHHHHHHHHHhcccCceEEEEe
Q 019123 241 ADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 241 ~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
.+...+++.+...+.++..+++..
T Consensus 77 ~~~~~~~~~l~~~l~~~~~iv~~~ 100 (304)
T PRK06522 77 YQLPAALPSLAPLLGPDTPVLFLQ 100 (304)
T ss_pred ccHHHHHHHHhhhcCCCCEEEEec
Confidence 245678888888887776665543
No 462
>PRK05993 short chain dehydrogenase; Provisional
Probab=73.73 E-value=51 Score=29.50 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=44.9
Q ss_pred CCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-----c------cCC
Q 019123 161 GLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-----E------EQR 226 (346)
Q Consensus 161 ~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~------~~~ 226 (346)
+++||=.|++.| .++..+++.|.+|++++.+++.++.... ..+.++.+|+.+.. . ..+
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~--------~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g 75 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA--------EGLEAFQLDYAEPESIAALVAQVLELSGG 75 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH--------CCceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 457887776544 2455566679999999998877665432 13567788876532 1 124
Q ss_pred ceeEEEecchh
Q 019123 227 KFDAVIASEVI 237 (346)
Q Consensus 227 ~fDlv~~~~~l 237 (346)
..|+++.+.++
T Consensus 76 ~id~li~~Ag~ 86 (277)
T PRK05993 76 RLDALFNNGAY 86 (277)
T ss_pred CccEEEECCCc
Confidence 68999887544
No 463
>PRK08703 short chain dehydrogenase; Provisional
Probab=73.56 E-value=18 Score=31.46 Aligned_cols=77 Identities=16% Similarity=0.055 Sum_probs=46.4
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccc-----c-----c---
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKL-----V-----E--- 223 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l-----~-----~--- 223 (346)
.+++||=.||+.| .++..++++|.+|++++.++..++.....+...+. ..+.++..|+.+. . .
T Consensus 5 ~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~i~~~ 83 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGH-PEPFAIRFDLMSAEEKEFEQFAATIAEA 83 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCC-CCcceEEeeecccchHHHHHHHHHHHHH
Confidence 4568898886554 35556666799999999998776655544432221 2345556665321 0 0
Q ss_pred cCCceeEEEecchh
Q 019123 224 EQRKFDAVIASEVI 237 (346)
Q Consensus 224 ~~~~fDlv~~~~~l 237 (346)
..+.+|+|+...+.
T Consensus 84 ~~~~id~vi~~ag~ 97 (239)
T PRK08703 84 TQGKLDGIVHCAGY 97 (239)
T ss_pred hCCCCCEEEEeccc
Confidence 01467988876553
No 464
>PRK07791 short chain dehydrogenase; Provisional
Probab=73.43 E-value=23 Score=32.12 Aligned_cols=77 Identities=17% Similarity=0.096 Sum_probs=50.1
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCCh---------HHHHHHHHhhccCCCCCceEEEEcCccccc-----
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVE---------KNIKIARLHADLDPETSTIEYCCTTAEKLV----- 222 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~---------~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~----- 222 (346)
.++.+|-.|++.| .++..+++.|++|+.++.+. +.++...+.+...+ .++.++.+|+.+..
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~~ 82 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAG--GEAVANGDDIADWDGAANL 82 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcC--CceEEEeCCCCCHHHHHHH
Confidence 5678888888777 35666777899999998764 44444443333322 45777888886531
Q ss_pred -----ccCCceeEEEecchhc
Q 019123 223 -----EEQRKFDAVIASEVIE 238 (346)
Q Consensus 223 -----~~~~~fDlv~~~~~l~ 238 (346)
..-+.+|+++.+.++.
T Consensus 83 ~~~~~~~~g~id~lv~nAG~~ 103 (286)
T PRK07791 83 VDAAVETFGGLDVLVNNAGIL 103 (286)
T ss_pred HHHHHHhcCCCCEEEECCCCC
Confidence 1125789998876553
No 465
>PRK08862 short chain dehydrogenase; Provisional
Probab=73.30 E-value=16 Score=31.87 Aligned_cols=75 Identities=15% Similarity=0.029 Sum_probs=52.6
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-----c-----cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-----E-----EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~~~ 226 (346)
.++.+|=.|++.| .++..++++|++|+.++.+++.++...+.+...+ ..+..+.+|..+.. + .-+
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQFN 81 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4578898988887 3677788889999999999988877665554433 34666667764432 0 114
Q ss_pred -ceeEEEecch
Q 019123 227 -KFDAVIASEV 236 (346)
Q Consensus 227 -~fDlv~~~~~ 236 (346)
.+|+++.+.+
T Consensus 82 ~~iD~li~nag 92 (227)
T PRK08862 82 RAPDVLVNNWT 92 (227)
T ss_pred CCCCEEEECCc
Confidence 7899988764
No 466
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=73.25 E-value=28 Score=34.63 Aligned_cols=106 Identities=13% Similarity=0.192 Sum_probs=61.9
Q ss_pred CCCeEEEECCCCchhHHHHHHc---C---CeEEEEcCChHHHHHHHHhhccCCCC-CceEEEEcCcccc-cc-cCCceeE
Q 019123 160 EGLNIVDVGCGGGILSEPLARM---G---ATVTGIDAVEKNIKIARLHADLDPET-STIEYCCTTAEKL-VE-EQRKFDA 230 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~l~~~---~---~~v~giD~s~~~l~~a~~~~~~~~~~-~~v~~~~~d~~~l-~~-~~~~fDl 230 (346)
+...|.|..||+|.+....... + ..++|.+..+.|...+..++.-.+.. .......+|-..- .. ....||+
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 4568999999999987654331 2 36999999999999888764322221 1122222222111 11 2345777
Q ss_pred EEecchh--------------------ccc----CC-HHHHHHHHHHhcccCceEEEEec
Q 019123 231 VIASEVI--------------------EHV----AD-PAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 231 v~~~~~l--------------------~~~----~~-~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
|+++--+ .|+ .+ --.++..+..+|++||...+.-+
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~ 356 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCF 356 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEec
Confidence 6653311 111 11 12577888889999997666544
No 467
>PRK07062 short chain dehydrogenase; Provisional
Probab=73.07 E-value=16 Score=32.41 Aligned_cols=78 Identities=17% Similarity=0.074 Sum_probs=52.2
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~~ 226 (346)
.++.+|=.|++.| .++..+++.|++|++++.+++.++...+.+.......++.++.+|+.+... .-+
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 86 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG 86 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 5678888887766 456667777999999999987776655544332111357778888765420 125
Q ss_pred ceeEEEecchh
Q 019123 227 KFDAVIASEVI 237 (346)
Q Consensus 227 ~fDlv~~~~~l 237 (346)
.+|+++.+.++
T Consensus 87 ~id~li~~Ag~ 97 (265)
T PRK07062 87 GVDMLVNNAGQ 97 (265)
T ss_pred CCCEEEECCCC
Confidence 68998877654
No 468
>PRK07832 short chain dehydrogenase; Provisional
Probab=73.05 E-value=48 Score=29.54 Aligned_cols=74 Identities=16% Similarity=0.070 Sum_probs=43.2
Q ss_pred eEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc----------ccCCcee
Q 019123 163 NIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV----------EEQRKFD 229 (346)
Q Consensus 163 ~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~----------~~~~~fD 229 (346)
++|=.|++.| .++..++++|++|+.++.+++.++...+.+...+. ..+.++.+|+.+.. ...+..|
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGG-TVPEHRALDISDYDAVAAFAADIHAAHGSMD 80 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 4555665443 24445566799999999888776655444432221 22455667775431 0124589
Q ss_pred EEEecchh
Q 019123 230 AVIASEVI 237 (346)
Q Consensus 230 lv~~~~~l 237 (346)
+++.+.+.
T Consensus 81 ~lv~~ag~ 88 (272)
T PRK07832 81 VVMNIAGI 88 (272)
T ss_pred EEEECCCC
Confidence 99876654
No 469
>PRK09291 short chain dehydrogenase; Provisional
Probab=73.02 E-value=21 Score=31.41 Aligned_cols=74 Identities=18% Similarity=0.189 Sum_probs=46.4
Q ss_pred CeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc----ccCCceeEEEec
Q 019123 162 LNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV----EEQRKFDAVIAS 234 (346)
Q Consensus 162 ~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~----~~~~~fDlv~~~ 234 (346)
++||=.|++.| .++..|++.|++|++++-++..+..........+ .++.++.+|+.+.. ......|+|+.+
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRG--LALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 36777766444 2444556679999999988766655544433332 35778888876542 113468998876
Q ss_pred chh
Q 019123 235 EVI 237 (346)
Q Consensus 235 ~~l 237 (346)
..+
T Consensus 81 ag~ 83 (257)
T PRK09291 81 AGI 83 (257)
T ss_pred CCc
Confidence 543
No 470
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.97 E-value=13 Score=34.30 Aligned_cols=98 Identities=20% Similarity=0.159 Sum_probs=55.2
Q ss_pred CeEEEECCCC--chhHHHHHHcCCeEEEEcCChHHHHHHHHhhccC-C------C----CCceEEEEcCcccccccCCce
Q 019123 162 LNIVDVGCGG--GILSEPLARMGATVTGIDAVEKNIKIARLHADLD-P------E----TSTIEYCCTTAEKLVEEQRKF 228 (346)
Q Consensus 162 ~~vLDiG~G~--G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~-~------~----~~~v~~~~~d~~~l~~~~~~f 228 (346)
.+|.=||+|. +.++..++..|.+|+++|.+++.++.+++.+... + . ..++.+ ..|..+. -...
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~---~~~a 80 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAA---VSGA 80 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHH---hccC
Confidence 4688889984 3566777777899999999998888776532110 0 0 011222 1222211 1246
Q ss_pred eEEEecchhcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 229 DAVIASEVIEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 229 Dlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
|+|+..- -........++.++..+++++.++....
T Consensus 81 DlVi~av-~~~~~~~~~v~~~l~~~~~~~~ii~s~t 115 (311)
T PRK06130 81 DLVIEAV-PEKLELKRDVFARLDGLCDPDTIFATNT 115 (311)
T ss_pred CEEEEec-cCcHHHHHHHHHHHHHhCCCCcEEEECC
Confidence 8887642 1111113467777877777655544333
No 471
>PRK07454 short chain dehydrogenase; Provisional
Probab=72.86 E-value=19 Score=31.29 Aligned_cols=74 Identities=7% Similarity=-0.058 Sum_probs=48.2
Q ss_pred CCeEEEECCCCch----hHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-----cc-----CC
Q 019123 161 GLNIVDVGCGGGI----LSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-----EE-----QR 226 (346)
Q Consensus 161 ~~~vLDiG~G~G~----~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~~-----~~ 226 (346)
.+++|=.|+ +|. ++..++++|.+|++++.++..+....+.+...+ .++.++.+|+.+.. .. -+
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 456777775 444 455566678999999998876655544443322 46888899986542 11 14
Q ss_pred ceeEEEecchh
Q 019123 227 KFDAVIASEVI 237 (346)
Q Consensus 227 ~fDlv~~~~~l 237 (346)
..|+++.+.+.
T Consensus 83 ~id~lv~~ag~ 93 (241)
T PRK07454 83 CPDVLINNAGM 93 (241)
T ss_pred CCCEEEECCCc
Confidence 58999876654
No 472
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=72.84 E-value=26 Score=32.03 Aligned_cols=96 Identities=18% Similarity=0.183 Sum_probs=56.6
Q ss_pred CeEEEECCCC--chhHHHHHHcCCeEEEEcCChHHHHHHHHhhc-------cCCC-C--------CceEEEEcCcccccc
Q 019123 162 LNIVDVGCGG--GILSEPLARMGATVTGIDAVEKNIKIARLHAD-------LDPE-T--------STIEYCCTTAEKLVE 223 (346)
Q Consensus 162 ~~vLDiG~G~--G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~-------~~~~-~--------~~v~~~~~d~~~l~~ 223 (346)
.+|.=||+|. ..++..++..|.+|+++|.+++.++.+++++. ..+. . ..+. ...+.+.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~-- 81 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNLEEL-- 81 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCHHHh--
Confidence 4688888883 35777778889999999999988876554322 1110 0 0111 12222221
Q ss_pred cCCceeEEEecchhcccCCHHHHHHHHHHhcccCceEEEE
Q 019123 224 EQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVIS 263 (346)
Q Consensus 224 ~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~ 263 (346)
...|+|+..- .+.......++.++...++|+.+++..
T Consensus 82 --~~aD~Vieav-~e~~~~k~~v~~~l~~~~~~~~il~s~ 118 (295)
T PLN02545 82 --RDADFIIEAI-VESEDLKKKLFSELDRICKPSAILASN 118 (295)
T ss_pred --CCCCEEEEcC-ccCHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 2358887642 111112346788888888888766533
No 473
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=72.56 E-value=14 Score=31.22 Aligned_cols=98 Identities=16% Similarity=0.180 Sum_probs=55.5
Q ss_pred hHHHHHHHHHhhhhccCCCCCCCCCC-CeEEEECCCCchhHHHHHHc--CCeEEEEcCChHHHHHHHHhhccCCC--CCc
Q 019123 136 TRLAFIRSTLCRHFRKDPYSARPFEG-LNIVDVGCGGGILSEPLARM--GATVTGIDAVEKNIKIARLHADLDPE--TST 210 (346)
Q Consensus 136 ~r~~~~~~~~~~~~~~~~~~~~~~~~-~~vLDiG~G~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~--~~~ 210 (346)
.|..++.+.+.+.+.. .++ ..|+.+|||-=....++... +..++-+|+ |++++.-++.+...+. ..+
T Consensus 60 ~Rt~~iD~~v~~~i~~-------~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~ 131 (183)
T PF04072_consen 60 ARTRYIDDAVREFIAK-------HPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPAN 131 (183)
T ss_dssp HHHHHHHHHHHHHHHH-------HTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEE
T ss_pred HHHHHHHHHHHHhhcc-------CCCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcc
Confidence 4555555555554421 133 48999999999999999875 346666665 5666666655554421 123
Q ss_pred eEEEEcCccccc---------ccCCceeEEEecchhcccC
Q 019123 211 IEYCCTTAEKLV---------EEQRKFDAVIASEVIEHVA 241 (346)
Q Consensus 211 v~~~~~d~~~l~---------~~~~~fDlv~~~~~l~~~~ 241 (346)
.+++.+|+.+.. +..+..-++++-.++.+++
T Consensus 132 ~~~v~~Dl~~~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~ 171 (183)
T PF04072_consen 132 YRYVPADLRDDSWIDALPKAGFDPDRPTLFIAEGVLMYLS 171 (183)
T ss_dssp SSEEES-TTSHHHHHHHHHCTT-TTSEEEEEEESSGGGS-
T ss_pred eeEEeccccchhhHHHHHHhCCCCCCCeEEEEcchhhcCC
Confidence 567888887532 1234455666767777775
No 474
>PRK07035 short chain dehydrogenase; Provisional
Probab=72.45 E-value=18 Score=31.72 Aligned_cols=75 Identities=13% Similarity=0.127 Sum_probs=50.0
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~~ 226 (346)
.+++||=.|++.| .++..|++.|.+|++++.++..++...+.+...+ .++.++.+|+.+... .-+
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRERHG 84 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4567888887766 4556667779999999998877666555544332 356777888755420 124
Q ss_pred ceeEEEecch
Q 019123 227 KFDAVIASEV 236 (346)
Q Consensus 227 ~fDlv~~~~~ 236 (346)
.+|+++....
T Consensus 85 ~id~li~~ag 94 (252)
T PRK07035 85 RLDILVNNAA 94 (252)
T ss_pred CCCEEEECCC
Confidence 6899886654
No 475
>PRK09135 pteridine reductase; Provisional
Probab=72.27 E-value=55 Score=28.34 Aligned_cols=77 Identities=8% Similarity=-0.050 Sum_probs=45.4
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCC-hHHHHHHHHhhccCCCCCceEEEEcCcccccc-----c-----C
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAV-EKNIKIARLHADLDPETSTIEYCCTTAEKLVE-----E-----Q 225 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s-~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~-----~-----~ 225 (346)
.+.+||-.|++.| .++..|+++|++|++++-+ ...++.....+.... ...+.++.+|+.+... . -
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALR-PGSAAALQADLLDPDALPELVAACVAAF 83 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhc-CCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3467888886544 3455566679999999975 333333333222211 1357788888865431 1 1
Q ss_pred CceeEEEecchh
Q 019123 226 RKFDAVIASEVI 237 (346)
Q Consensus 226 ~~fDlv~~~~~l 237 (346)
+..|+|+.....
T Consensus 84 ~~~d~vi~~ag~ 95 (249)
T PRK09135 84 GRLDALVNNASS 95 (249)
T ss_pred CCCCEEEECCCC
Confidence 357988876553
No 476
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=72.21 E-value=14 Score=30.74 Aligned_cols=72 Identities=15% Similarity=0.102 Sum_probs=42.2
Q ss_pred HHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc-cCCceeEEEecchhcccCCHHHHHHHHHHhccc
Q 019123 178 LARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE-EQRKFDAVIASEVIEHVADPAEFCKSLSALTVS 256 (346)
Q Consensus 178 l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~Lkp 256 (346)
+...|..|...+.-. ....+-.....+...+-...+. +.+.+|++++. ++ ..+......|||
T Consensus 16 ~~~~G~~v~~~~~yg---------s~~rGG~~~~~vris~~~~~~~~~~~~~Dilv~l-------~~-~~~~~~~~~l~~ 78 (173)
T PF01558_consen 16 AAREGYYVQSTPEYG---------SEIRGGPVVSHVRISDEPIIPSPPVGEADILVAL-------DP-EALERHLKGLKP 78 (173)
T ss_dssp HHHTTSEEEEEEEEE---------SSSSSSCEEEEEEEESS--SSSS-TSSESEEEES-------SH-HHHHHCGTTCET
T ss_pred HHHcCCCEEEEeCCC---------hhhcCCeEEEEEEEecCcCccCcccCCCCEEEEc-------CH-HHHHHHhcCcCc
Confidence 344577777776533 1222222334444555312233 34789999986 44 444477778999
Q ss_pred CceEEEEecC
Q 019123 257 EGATVISTIN 266 (346)
Q Consensus 257 gG~~~~~~~~ 266 (346)
||++++....
T Consensus 79 ~g~vi~ns~~ 88 (173)
T PF01558_consen 79 GGVVIINSSL 88 (173)
T ss_dssp TEEEEEETTT
T ss_pred CeEEEEECCC
Confidence 9999998743
No 477
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=71.94 E-value=6.7 Score=31.08 Aligned_cols=91 Identities=15% Similarity=0.116 Sum_probs=49.3
Q ss_pred CCCeEEEECCCCc-hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccccc-CCceeEEEecchh
Q 019123 160 EGLNIVDVGCGGG-ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVEE-QRKFDAVIASEVI 237 (346)
Q Consensus 160 ~~~~vLDiG~G~G-~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~fDlv~~~~~l 237 (346)
...+|+|||-|.= ..+..|.++|.+|+++|+++. .+. ..+.++..|+.+.... =...|+|.+..
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~-------~a~-----~g~~~v~DDif~P~l~iY~~a~lIYSiR-- 78 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR-------KAP-----EGVNFVVDDIFNPNLEIYEGADLIYSIR-- 78 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S----------------STTEE---SSS--HHHHTTEEEEEEES--
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc-------ccc-----cCcceeeecccCCCHHHhcCCcEEEEeC--
Confidence 3459999999976 578888889999999999985 111 2366888887663311 12478888753
Q ss_pred cccCCHHHHHHHHHHhcccCceEEEEecCc
Q 019123 238 EHVADPAEFCKSLSALTVSEGATVISTINR 267 (346)
Q Consensus 238 ~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~ 267 (346)
--++.+..+-++.+. -|.-+++..++.
T Consensus 79 -PP~El~~~il~lA~~--v~adlii~pL~~ 105 (127)
T PF03686_consen 79 -PPPELQPPILELAKK--VGADLIIRPLGG 105 (127)
T ss_dssp ---TTSHHHHHHHHHH--HT-EEEEE-BTT
T ss_pred -CChHHhHHHHHHHHH--hCCCEEEECCCC
Confidence 223445555555553 356677766543
No 478
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=71.94 E-value=24 Score=33.52 Aligned_cols=93 Identities=18% Similarity=0.169 Sum_probs=51.4
Q ss_pred CCCCeEEEECCC-CchhHHHHHHc-CCeEEEEcCChHH-HHHHHHhhccCCCCCceEEEE-cCcccccccCCceeEEEec
Q 019123 159 FEGLNIVDVGCG-GGILSEPLARM-GATVTGIDAVEKN-IKIARLHADLDPETSTIEYCC-TTAEKLVEEQRKFDAVIAS 234 (346)
Q Consensus 159 ~~~~~vLDiG~G-~G~~~~~l~~~-~~~v~giD~s~~~-l~~a~~~~~~~~~~~~v~~~~-~d~~~l~~~~~~fDlv~~~ 234 (346)
.++.+||=.|+| .|..+..+++. |++|++++.+++. .+.+++ + +. . .++. .+.+.+....+.+|+|+-.
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~-l---Ga-~--~~i~~~~~~~v~~~~~~~D~vid~ 249 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDR-L---GA-D--SFLVTTDSQKMKEAVGTMDFIIDT 249 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHh-C---CC-c--EEEcCcCHHHHHHhhCCCcEEEEC
Confidence 367788888764 33444455544 8899999987654 344432 1 21 0 1111 1111111111247888743
Q ss_pred chhcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 235 EVIEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 235 ~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
- .....+..+.+.|++||.++...
T Consensus 250 ~------G~~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 250 V------SAEHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred C------CcHHHHHHHHHhhcCCCEEEEEc
Confidence 2 12346778888999999998764
No 479
>PRK12746 short chain dehydrogenase; Provisional
Probab=71.68 E-value=63 Score=28.20 Aligned_cols=75 Identities=13% Similarity=0.083 Sum_probs=42.2
Q ss_pred CCCeEEEECCCCchhHHH----HHHcCCeEEEE-cCChHHHHHHHHhhccCCCCCceEEEEcCcccccc-----c-----
Q 019123 160 EGLNIVDVGCGGGILSEP----LARMGATVTGI-DAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE-----E----- 224 (346)
Q Consensus 160 ~~~~vLDiG~G~G~~~~~----l~~~~~~v~gi-D~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~-----~----- 224 (346)
.+.+||=.|+ +|.++.. ++++|.+|..+ ..+.+.++.........+ .++.++.+|+.+... .
T Consensus 5 ~~~~ilItGa-sg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~i~~~~~~~~~~ 81 (254)
T PRK12746 5 DGKVALVTGA-SRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNG--GKAFLIEADLNSIDGVKKLVEQLKNE 81 (254)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCcCCHHHHHHHHHHHHHH
Confidence 3467886664 5555444 45568888765 455544443333332221 357788888865421 0
Q ss_pred ------CCceeEEEecchh
Q 019123 225 ------QRKFDAVIASEVI 237 (346)
Q Consensus 225 ------~~~fDlv~~~~~l 237 (346)
....|+|+...+.
T Consensus 82 ~~~~~~~~~id~vi~~ag~ 100 (254)
T PRK12746 82 LQIRVGTSEIDILVNNAGI 100 (254)
T ss_pred hccccCCCCccEEEECCCC
Confidence 1358998866543
No 480
>PRK07102 short chain dehydrogenase; Provisional
Probab=71.57 E-value=16 Score=31.88 Aligned_cols=74 Identities=9% Similarity=-0.050 Sum_probs=45.5
Q ss_pred CeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc-------cCCceeEE
Q 019123 162 LNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE-------EQRKFDAV 231 (346)
Q Consensus 162 ~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~-------~~~~fDlv 231 (346)
++||-.|+..| .++..+++.|++|++++.+++..+...+.....+ ..++.++.+|+.+... -...+|++
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v 80 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALPDIV 80 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence 36776665433 3444566679999999998876654443332221 2478899999866421 12347988
Q ss_pred Eecch
Q 019123 232 IASEV 236 (346)
Q Consensus 232 ~~~~~ 236 (346)
+....
T Consensus 81 v~~ag 85 (243)
T PRK07102 81 LIAVG 85 (243)
T ss_pred EECCc
Confidence 87543
No 481
>PRK05866 short chain dehydrogenase; Provisional
Probab=71.56 E-value=18 Score=33.02 Aligned_cols=76 Identities=20% Similarity=0.146 Sum_probs=50.5
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-----c-----cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-----E-----EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~~~ 226 (346)
.+++||=.|++.| .++..++++|++|++++.+.+.++...+.+...+ ..+.++.+|+.+.. . .-+
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~g 116 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAG--GDAMAVPCDLSDLDAVDALVADVEKRIG 116 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3467888877555 3555566779999999999877766555443322 35778888886532 0 124
Q ss_pred ceeEEEecchh
Q 019123 227 KFDAVIASEVI 237 (346)
Q Consensus 227 ~fDlv~~~~~l 237 (346)
..|+++.+.+.
T Consensus 117 ~id~li~~AG~ 127 (293)
T PRK05866 117 GVDILINNAGR 127 (293)
T ss_pred CCCEEEECCCC
Confidence 68999987654
No 482
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=71.41 E-value=1e+02 Score=29.92 Aligned_cols=155 Identities=15% Similarity=0.157 Sum_probs=89.6
Q ss_pred CCCHHHHHHHHHHHHhhhCcCCCCCcccccChh--HHHHHHHHHhhhhccC--CCCCCCCCCCeEEEECC-CCc------
Q 019123 104 SLKHAELAKFSAIADTWWDAEGPYKPLHALNPT--RLAFIRSTLCRHFRKD--PYSARPFEGLNIVDVGC-GGG------ 172 (346)
Q Consensus 104 ~~~~~~~~~f~~~a~~y~~~~~~~~~~~~~n~~--r~~~~~~~~~~~~~~~--~~~~~~~~~~~vLDiG~-G~G------ 172 (346)
+|+...+..|.+....--.... +...+++. -...+.+.+.+.+... .......++..||=+|- |+|
T Consensus 42 DVnl~vVk~fi~~ikera~g~e---v~~~l~p~q~~iKiV~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~ 118 (451)
T COG0541 42 DVNLKVVKDFIKRIKERALGEE---VPKGLTPGQQFIKIVYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAG 118 (451)
T ss_pred cccHHHHHHHHHHHHHHhcccc---CCCCCCHHHHHHHHHHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHH
Confidence 4555556666544333211111 11333332 1334445555555421 11222445677888873 444
Q ss_pred hhHHHHHHcCCe--EEEEcCC-hHHHHHHHHhhccCCCCCceEEEEcCccccc----------ccCCceeEEEecchhcc
Q 019123 173 ILSEPLARMGAT--VTGIDAV-EKNIKIARLHADLDPETSTIEYCCTTAEKLV----------EEQRKFDAVIASEVIEH 239 (346)
Q Consensus 173 ~~~~~l~~~~~~--v~giD~s-~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~----------~~~~~fDlv~~~~~l~~ 239 (346)
-++.++.+++.+ ++++|+- |.++++.+....+.+ +.|+..+.+.-| ...+.||+|++--.=+|
T Consensus 119 KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~----v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl 194 (451)
T COG0541 119 KLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVG----VPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRL 194 (451)
T ss_pred HHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcC----CceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 456666666664 7788865 788899888877654 556655433322 23567999998654443
Q ss_pred cCC--HHHHHHHHHHhcccCceEEEEec
Q 019123 240 VAD--PAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 240 ~~~--~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
--| .-.-++++..+++|.-+|++.+-
T Consensus 195 ~ide~Lm~El~~Ik~~~~P~E~llVvDa 222 (451)
T COG0541 195 HIDEELMDELKEIKEVINPDETLLVVDA 222 (451)
T ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEec
Confidence 333 33568889999999999999865
No 483
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=71.21 E-value=33 Score=31.26 Aligned_cols=96 Identities=19% Similarity=0.113 Sum_probs=52.8
Q ss_pred eEEEECCCCc--hhHHHHHHcCCeEEEEcCChHHHHHHHHhh-ccCCCCCceEEEEcCc-ccccccCCceeEEEecchhc
Q 019123 163 NIVDVGCGGG--ILSEPLARMGATVTGIDAVEKNIKIARLHA-DLDPETSTIEYCCTTA-EKLVEEQRKFDAVIASEVIE 238 (346)
Q Consensus 163 ~vLDiG~G~G--~~~~~l~~~~~~v~giD~s~~~l~~a~~~~-~~~~~~~~v~~~~~d~-~~l~~~~~~fDlv~~~~~l~ 238 (346)
+|+=+|+|.- .++..|++.|.+|+.++. ++.++..++.- ..........+ .... .+.......+|+|++.---
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~vilavk~- 78 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVV-PGPVITDPEELTGPFDLVILAVKA- 78 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEe-cceeecCHHHccCCCCEEEEEecc-
Confidence 5777888854 366667777889999998 66665544321 00000001111 0000 1111112568988765322
Q ss_pred ccCCHHHHHHHHHHhcccCceEEEE
Q 019123 239 HVADPAEFCKSLSALTVSEGATVIS 263 (346)
Q Consensus 239 ~~~~~~~~l~~~~r~LkpgG~~~~~ 263 (346)
...+.+++.+...+.++..+++.
T Consensus 79 --~~~~~~~~~l~~~~~~~~~ii~~ 101 (305)
T PRK12921 79 --YQLDAAIPDLKPLVGEDTVIIPL 101 (305)
T ss_pred --cCHHHHHHHHHhhcCCCCEEEEe
Confidence 24567888888888877655544
No 484
>PRK07478 short chain dehydrogenase; Provisional
Probab=71.18 E-value=21 Score=31.45 Aligned_cols=76 Identities=12% Similarity=0.049 Sum_probs=51.1
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-----c-----cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-----E-----EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~~~ 226 (346)
.++++|=.|++.| .++..|++.|++|+.++.+++.++.....+...+ .++.++.+|+.+.. . .-+
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERFG 82 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 3567887776554 3556666779999999998877776655554333 46778888876542 0 124
Q ss_pred ceeEEEecchh
Q 019123 227 KFDAVIASEVI 237 (346)
Q Consensus 227 ~fDlv~~~~~l 237 (346)
.+|+++.+..+
T Consensus 83 ~id~li~~ag~ 93 (254)
T PRK07478 83 GLDIAFNNAGT 93 (254)
T ss_pred CCCEEEECCCC
Confidence 68998877654
No 485
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=70.94 E-value=9.4 Score=36.46 Aligned_cols=46 Identities=9% Similarity=0.004 Sum_probs=32.4
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHcCCeEEEEcCChHHHHHHHHhh
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARMGATVTGIDAVEKNIKIARLHA 202 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~ 202 (346)
.+.++.+||-|++|.......+...-.+|++||+||..+...+-+.
T Consensus 32 ~i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 32 NIGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred CCCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHHHH
Confidence 5668899999965544444444444469999999998876665443
No 486
>PRK06194 hypothetical protein; Provisional
Probab=70.92 E-value=19 Score=32.37 Aligned_cols=77 Identities=12% Similarity=0.080 Sum_probs=48.8
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~~ 226 (346)
.+.+||=.|++.| .++..|++.|++|+.+|.+...++.....+...+ .++.++.+|+.+... ..+
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~g 82 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALERFG 82 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3467886655433 3445566679999999998777665544443322 457788888865320 123
Q ss_pred ceeEEEecchhc
Q 019123 227 KFDAVIASEVIE 238 (346)
Q Consensus 227 ~fDlv~~~~~l~ 238 (346)
..|+|+.+.++.
T Consensus 83 ~id~vi~~Ag~~ 94 (287)
T PRK06194 83 AVHLLFNNAGVG 94 (287)
T ss_pred CCCEEEECCCCC
Confidence 579999877653
No 487
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=70.76 E-value=21 Score=33.97 Aligned_cols=106 Identities=15% Similarity=0.058 Sum_probs=65.7
Q ss_pred CCCCCCeEEEECCCCchhHHHHHHcCC--eEEEEcCChHHHHHH----------HHhhccCCCCCceEEEEcCcccccc-
Q 019123 157 RPFEGLNIVDVGCGGGILSEPLARMGA--TVTGIDAVEKNIKIA----------RLHADLDPETSTIEYCCTTAEKLVE- 223 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~giD~s~~~l~~a----------~~~~~~~~~~~~v~~~~~d~~~l~~- 223 (346)
...++....|+|+|.|.....++..+. .-.|+++....-+.+ .+.+... ...+..+++++..-..
T Consensus 189 ~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~--~~~~~~i~gsf~~~~~v 266 (419)
T KOG3924|consen 189 KLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKK--PNKIETIHGSFLDPKRV 266 (419)
T ss_pred ccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCC--cCceeecccccCCHHHH
Confidence 556788999999999998888877633 567777654332222 2222222 2456777776644321
Q ss_pred --cCCceeEEEecchhcccCCHHHHHHHHHHhcccCceEEEEec
Q 019123 224 --EQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTI 265 (346)
Q Consensus 224 --~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~ 265 (346)
-....++|+++.+.- -++...-++++..-+++|-.++-..+
T Consensus 267 ~eI~~eatvi~vNN~~F-dp~L~lr~~eil~~ck~gtrIiS~~~ 309 (419)
T KOG3924|consen 267 TEIQTEATVIFVNNVAF-DPELKLRSKEILQKCKDGTRIISSKP 309 (419)
T ss_pred HHHhhcceEEEEecccC-CHHHHHhhHHHHhhCCCcceEecccc
Confidence 134578888776543 12222345688888899988887655
No 488
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=70.70 E-value=20 Score=31.56 Aligned_cols=76 Identities=17% Similarity=0.121 Sum_probs=51.1
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~~ 226 (346)
.+++||-.|++.| .++..++++|.+++.++.+...++.........+ .++.++.+|+.+... .-+
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 87 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFALSKLG 87 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4678999987766 3556677779999999988777765544433322 357788888865420 124
Q ss_pred ceeEEEecchh
Q 019123 227 KFDAVIASEVI 237 (346)
Q Consensus 227 ~fDlv~~~~~l 237 (346)
.+|+++...++
T Consensus 88 ~~d~li~~ag~ 98 (255)
T PRK06113 88 KVDILVNNAGG 98 (255)
T ss_pred CCCEEEECCCC
Confidence 68988876543
No 489
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=70.66 E-value=13 Score=34.93 Aligned_cols=95 Identities=16% Similarity=0.251 Sum_probs=56.7
Q ss_pred CCCCCCeEEEECCCC-chhHHHHHHc-CC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccc----cc-ccCCce
Q 019123 157 RPFEGLNIVDVGCGG-GILSEPLARM-GA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEK----LV-EEQRKF 228 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~-G~~~~~l~~~-~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~----l~-~~~~~f 228 (346)
...++.+||=.|+|. |..+..++.. |. .|+++|.++...+.+++.-. ..++..+-.. +. .....+
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~-------~~~i~~~~~~~~~~v~~~~~~~~ 255 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGA-------THVINPKEEDLVAAIREITGGGV 255 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC-------cEEecCCCcCHHHHHHHHhCCCC
Confidence 345677888887642 4555555554 77 69999999888877654211 1111111111 11 113458
Q ss_pred eEEEecchhcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 229 DAVIASEVIEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 229 Dlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
|+|+-.-. . ...+..+.+.|+++|.++...
T Consensus 256 d~vld~~g-----~-~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 256 DYALDTTG-----V-PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred cEEEECCC-----C-cHHHHHHHHHhccCCEEEEeC
Confidence 98875321 1 246788899999999988754
No 490
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=70.54 E-value=28 Score=35.52 Aligned_cols=91 Identities=13% Similarity=0.142 Sum_probs=57.1
Q ss_pred CeEEEECCCCchhHHHH----HHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----cCCceeEEEe
Q 019123 162 LNIVDVGCGGGILSEPL----ARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----EQRKFDAVIA 233 (346)
Q Consensus 162 ~~vLDiG~G~G~~~~~l----~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----~~~~fDlv~~ 233 (346)
.+|+=+|+| .++..+ .+++.+|+.+|.+++.++.+++. ...++.+|+.+... .-...|++++
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~agi~~A~~vv~ 470 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRKY--------GYKVYYGDATQLELLRAAGAEKAEAIVI 470 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC--------CCeEEEeeCCCHHHHHhcCCccCCEEEE
Confidence 356555554 444444 44588999999999999888652 25678889876541 2235777766
Q ss_pred cchhcccCCHHH--HHHHHHHhcccCceEEEEecCc
Q 019123 234 SEVIEHVADPAE--FCKSLSALTVSEGATVISTINR 267 (346)
Q Consensus 234 ~~~l~~~~~~~~--~l~~~~r~LkpgG~~~~~~~~~ 267 (346)
.. +|.+. .+-...|.+.|...+++-..++
T Consensus 471 ~~-----~d~~~n~~i~~~~r~~~p~~~IiaRa~~~ 501 (601)
T PRK03659 471 TC-----NEPEDTMKIVELCQQHFPHLHILARARGR 501 (601)
T ss_pred Ee-----CCHHHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 42 34433 2333455567887787766554
No 491
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=70.44 E-value=14 Score=34.85 Aligned_cols=99 Identities=17% Similarity=0.198 Sum_probs=57.4
Q ss_pred CCCCCCeEEEECCCC-chhHHHHHHc-CC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEE--cCccc-cc-ccCCcee
Q 019123 157 RPFEGLNIVDVGCGG-GILSEPLARM-GA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCC--TTAEK-LV-EEQRKFD 229 (346)
Q Consensus 157 ~~~~~~~vLDiG~G~-G~~~~~l~~~-~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~--~d~~~-l~-~~~~~fD 229 (346)
...++.+||=+|+|. |..+..+++. |. +|+++|.+++.++.+++.-.. .-+.... .+..+ +. ...+.+|
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~----~~i~~~~~~~~~~~~v~~~~~~g~d 257 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGAT----DCVNPNDYDKPIQEVIVEITDGGVD 257 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCC----eEEcccccchhHHHHHHHHhCCCCC
Confidence 445778999888752 4455555554 77 799999999988888653211 0011110 01111 10 1123588
Q ss_pred EEEecchhcccCCHHHHHHHHHHhcccC-ceEEEEec
Q 019123 230 AVIASEVIEHVADPAEFCKSLSALTVSE-GATVISTI 265 (346)
Q Consensus 230 lv~~~~~l~~~~~~~~~l~~~~r~Lkpg-G~~~~~~~ 265 (346)
+|+-.-. . ...+..+.+.|++| |.+++...
T Consensus 258 ~vid~~G-----~-~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 258 YSFECIG-----N-VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred EEEECCC-----C-HHHHHHHHHHhhcCCCeEEEEec
Confidence 8874321 1 34677788899886 98876654
No 492
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=70.37 E-value=50 Score=30.78 Aligned_cols=95 Identities=23% Similarity=0.229 Sum_probs=53.0
Q ss_pred CCCeEEEECCC-CchhHHHHHHc-CC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcc----ccc--ccCCceeE
Q 019123 160 EGLNIVDVGCG-GGILSEPLARM-GA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAE----KLV--EEQRKFDA 230 (346)
Q Consensus 160 ~~~~vLDiG~G-~G~~~~~l~~~-~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~----~l~--~~~~~fDl 230 (346)
++.+||=.|+| .|..+..++.. |. +|++++.+++..+.+++. +...-+.....+.. .+. .....+|+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~ 252 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREF----GADATIDIDELPDPQRRAIVRDITGGRGADV 252 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCCeEEcCcccccHHHHHHHHHHhCCCCCcE
Confidence 67778877753 22333444443 78 899999888777766432 11000111111110 110 12346898
Q ss_pred EEecchhcccCCHHHHHHHHHHhcccCceEEEEe
Q 019123 231 VIASEVIEHVADPAEFCKSLSALTVSEGATVIST 264 (346)
Q Consensus 231 v~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~ 264 (346)
|+-... ....+..+.+.|+++|.++...
T Consensus 253 vid~~g------~~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 253 VIEASG------HPAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred EEECCC------ChHHHHHHHHHhccCCEEEEEc
Confidence 884321 1246778889999999998764
No 493
>PRK07024 short chain dehydrogenase; Provisional
Probab=70.31 E-value=20 Score=31.64 Aligned_cols=73 Identities=19% Similarity=0.202 Sum_probs=48.3
Q ss_pred CeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cCCce
Q 019123 162 LNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQRKF 228 (346)
Q Consensus 162 ~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~~~f 228 (346)
++||=.|++.| .++..|+++|++|+.++.+++.++...+.+... .++.++.+|+.+... .-+..
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~i 79 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKA---ARVSVYAADVRDADALAAAAADFIAAHGLP 79 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccC---CeeEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 46777776544 355566677999999999987776655444321 268888999865320 12457
Q ss_pred eEEEecchh
Q 019123 229 DAVIASEVI 237 (346)
Q Consensus 229 Dlv~~~~~l 237 (346)
|+++.+.++
T Consensus 80 d~lv~~ag~ 88 (257)
T PRK07024 80 DVVIANAGI 88 (257)
T ss_pred CEEEECCCc
Confidence 999987654
No 494
>PRK06484 short chain dehydrogenase; Validated
Probab=70.28 E-value=38 Score=33.51 Aligned_cols=73 Identities=14% Similarity=0.141 Sum_probs=49.8
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc-----c-----cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV-----E-----EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~~~ 226 (346)
.++.+|=.|++.| .++..|+++|++|+.++.+.+.++...+... .++.++.+|+.+.. + .-+
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~g 78 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLG-----PDHHALAMDVSDEAQIREGFEQLHREFG 78 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----CceeEEEeccCCHHHHHHHHHHHHHHhC
Confidence 4567888887776 4666777789999999998877665544331 35667788875431 0 125
Q ss_pred ceeEEEecchh
Q 019123 227 KFDAVIASEVI 237 (346)
Q Consensus 227 ~fDlv~~~~~l 237 (346)
.+|+++.+..+
T Consensus 79 ~iD~li~nag~ 89 (520)
T PRK06484 79 RIDVLVNNAGV 89 (520)
T ss_pred CCCEEEECCCc
Confidence 68999877654
No 495
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=70.15 E-value=11 Score=34.49 Aligned_cols=75 Identities=19% Similarity=0.206 Sum_probs=44.0
Q ss_pred ECCCCchhHHHHHHc----C-CeEEEEcCChHHHHHHHHhhccCCCCCceEE----EEcCccccc-----ccCCceeEEE
Q 019123 167 VGCGGGILSEPLARM----G-ATVTGIDAVEKNIKIARLHADLDPETSTIEY----CCTTAEKLV-----EEQRKFDAVI 232 (346)
Q Consensus 167 iG~G~G~~~~~l~~~----~-~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~----~~~d~~~l~-----~~~~~fDlv~ 232 (346)
|-+|+|.++..|.++ + .+++.+|.++..+-..++.+.......++.+ +.+|+.+.. +.....|+|+
T Consensus 3 VTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVf 82 (293)
T PF02719_consen 3 VTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVF 82 (293)
T ss_dssp EETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEE
T ss_pred EEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEE
Confidence 446788888887765 3 3899999999998888777642211134544 478886643 3445789999
Q ss_pred ecchhcccC
Q 019123 233 ASEVIEHVA 241 (346)
Q Consensus 233 ~~~~l~~~~ 241 (346)
-..++-|++
T Consensus 83 HaAA~KhVp 91 (293)
T PF02719_consen 83 HAAALKHVP 91 (293)
T ss_dssp E------HH
T ss_pred EChhcCCCC
Confidence 999988885
No 496
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=70.10 E-value=23 Score=30.84 Aligned_cols=76 Identities=13% Similarity=0.118 Sum_probs=48.6
Q ss_pred CCCeEEEECCCCc---hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCcccccc----------cCC
Q 019123 160 EGLNIVDVGCGGG---ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLVE----------EQR 226 (346)
Q Consensus 160 ~~~~vLDiG~G~G---~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------~~~ 226 (346)
++++||=.|++.| .++..|++.|.+|++++.+..........+...+ .++.++.+|+.+... .-+
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 79 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITDRDSVDTAVAAAEQALG 79 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 3567887876443 3455556678999999998877666555443322 468888888865321 013
Q ss_pred ceeEEEecchh
Q 019123 227 KFDAVIASEVI 237 (346)
Q Consensus 227 ~fDlv~~~~~l 237 (346)
..|+++...+.
T Consensus 80 ~~d~vi~~ag~ 90 (250)
T TIGR03206 80 PVDVLVNNAGW 90 (250)
T ss_pred CCCEEEECCCC
Confidence 57988776643
No 497
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=70.07 E-value=18 Score=37.66 Aligned_cols=102 Identities=13% Similarity=0.038 Sum_probs=66.9
Q ss_pred CCCeEEEECCCCc--hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccC-------C-C--------CCceEEEEcCcccc
Q 019123 160 EGLNIVDVGCGGG--ILSEPLARMGATVTGIDAVEKNIKIARLHADLD-------P-E--------TSTIEYCCTTAEKL 221 (346)
Q Consensus 160 ~~~~vLDiG~G~G--~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~-------~-~--------~~~v~~~~~d~~~l 221 (346)
+-.+|.-||+|+= .++..++..|.+|+.+|.+++.++.+.+++... + + ..++.+. .|...
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~- 389 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAG- 389 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH-
Confidence 3357899999953 577778888999999999999998776654321 1 0 0123222 12211
Q ss_pred cccCCceeEEEecchhcccCCHHHHHHHHHHhcccCceEEEEecCc
Q 019123 222 VEEQRKFDAVIASEVIEHVADPAEFCKSLSALTVSEGATVISTINR 267 (346)
Q Consensus 222 ~~~~~~fDlv~~~~~l~~~~~~~~~l~~~~r~LkpgG~~~~~~~~~ 267 (346)
-...|+|+=. +.+.+.-..+++.++.++++|+.+|.-.+.+.
T Consensus 390 ---~~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l 431 (714)
T TIGR02437 390 ---FDNVDIVVEA-VVENPKVKAAVLAEVEQHVREDAILASNTSTI 431 (714)
T ss_pred ---hcCCCEEEEc-CcccHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 1346777643 44444445689999999999998887765543
No 498
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=70.03 E-value=25 Score=32.10 Aligned_cols=87 Identities=24% Similarity=0.251 Sum_probs=53.0
Q ss_pred CeEEEECCC--CchhHHHHHHcCC--eEEEEcCChHHHHHHHHhhccCCCCCceEEEE-cCcccccccCCceeEEEecch
Q 019123 162 LNIVDVGCG--GGILSEPLARMGA--TVTGIDAVEKNIKIARLHADLDPETSTIEYCC-TTAEKLVEEQRKFDAVIASEV 236 (346)
Q Consensus 162 ~~vLDiG~G--~G~~~~~l~~~~~--~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~-~d~~~l~~~~~~fDlv~~~~~ 236 (346)
.+|+=+|.| -|.++..+...|. .++|.|.+...++.+...- +.... .+... ......|+|+.+--
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lg--------v~d~~~~~~~~--~~~~~aD~VivavP 73 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELG--------VIDELTVAGLA--EAAAEADLVIVAVP 73 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcC--------cccccccchhh--hhcccCCEEEEecc
Confidence 456666666 4567777777777 4688888887777665432 11111 11101 12345799998754
Q ss_pred hcccCCHHHHHHHHHHhcccCceEE
Q 019123 237 IEHVADPAEFCKSLSALTVSEGATV 261 (346)
Q Consensus 237 l~~~~~~~~~l~~~~r~LkpgG~~~ 261 (346)
+. ....+++++...||+|.++.
T Consensus 74 i~---~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 74 IE---ATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred HH---HHHHHHHHhcccCCCCCEEE
Confidence 43 34578888888888886554
No 499
>PLN02827 Alcohol dehydrogenase-like
Probab=70.00 E-value=15 Score=34.87 Aligned_cols=99 Identities=17% Similarity=0.150 Sum_probs=55.5
Q ss_pred CCCCCCeEEEECCC-CchhHHHHHHc-CC-eEEEEcCChHHHHHHHHhhccCCCCCceEEEE--cCccc-cc-ccCCcee
Q 019123 157 RPFEGLNIVDVGCG-GGILSEPLARM-GA-TVTGIDAVEKNIKIARLHADLDPETSTIEYCC--TTAEK-LV-EEQRKFD 229 (346)
Q Consensus 157 ~~~~~~~vLDiG~G-~G~~~~~l~~~-~~-~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~--~d~~~-l~-~~~~~fD 229 (346)
...++.+||-+|+| .|..+..++.. |. .|+++|.+++.++.+++.- ...-+.... .+... +. ...+.+|
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lG----a~~~i~~~~~~~~~~~~v~~~~~~g~d 265 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFG----VTDFINPNDLSEPIQQVIKRMTGGGAD 265 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcC----CcEEEcccccchHHHHHHHHHhCCCCC
Confidence 44578899988764 23344444443 76 5899999998888775431 100011110 01111 11 1122588
Q ss_pred EEEecchhcccCCHHHHHHHHHHhcccC-ceEEEEec
Q 019123 230 AVIASEVIEHVADPAEFCKSLSALTVSE-GATVISTI 265 (346)
Q Consensus 230 lv~~~~~l~~~~~~~~~l~~~~r~Lkpg-G~~~~~~~ 265 (346)
+|+-.-+ ....+..+.+.|++| |.+++.-.
T Consensus 266 ~vid~~G------~~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 266 YSFECVG------DTGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred EEEECCC------ChHHHHHHHHhhccCCCEEEEECC
Confidence 8874322 124567788889998 99987543
No 500
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=69.88 E-value=61 Score=29.12 Aligned_cols=75 Identities=17% Similarity=0.001 Sum_probs=45.4
Q ss_pred CCCeEEEECCC----Cc-hhHHHHHHcCCeEEEEcCChHHHHHHHHhhccCCCCCceEEEEcCccccc----------cc
Q 019123 160 EGLNIVDVGCG----GG-ILSEPLARMGATVTGIDAVEKNIKIARLHADLDPETSTIEYCCTTAEKLV----------EE 224 (346)
Q Consensus 160 ~~~~vLDiG~G----~G-~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~l~----------~~ 224 (346)
.++.+|=.|++ .| .++..+++.|++|+.++.+....+.+.+.....+ .. .++.+|+.+.. ..
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~--~~-~~~~~Dv~d~~~v~~~~~~i~~~ 80 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELG--SD-YVYELDVSKPEHFKSLAESLKKD 80 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC--Cc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 45788888875 33 3566677789999999988532222222222212 22 46777876542 12
Q ss_pred CCceeEEEecchh
Q 019123 225 QRKFDAVIASEVI 237 (346)
Q Consensus 225 ~~~fDlv~~~~~l 237 (346)
-+.+|+++.+.++
T Consensus 81 ~g~iDilVnnAG~ 93 (274)
T PRK08415 81 LGKIDFIVHSVAF 93 (274)
T ss_pred cCCCCEEEECCcc
Confidence 3678999887665
Done!