BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019124
         (346 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZY2|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase
          Length = 544

 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 10/62 (16%)

Query: 177 DKATKAATGGSDVMFRELRKPRGDPEVLAAQSKEQYFKL------KSKL--QFLTLGIGG 228
           D+  K A+G ++ +   L   RG+P  LA   +  +F+L      +S+L   ++T+G+GG
Sbjct: 18  DELIKVASGKANRLM--LNAGRGNPNFLATTPRRAFFRLGLFAAAESELSYSYMTVGVGG 75

Query: 229 VG 230
           + 
Sbjct: 76  LA 77


>pdb|2C2J|A Chain A, Crystal Structure Of The Dps92 From Deinococcus
           Radiodurans
 pdb|2C6R|A Chain A, Fe-Soaked Crystal Structure Of The Dps92 From Deinococcus
           Radiodurans
          Length = 211

 Score = 28.1 bits (61), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 316 LVGFFTYKIATFFQAVEEAVSIVEKKDP 343
           ++ FFTY+  T  Q + + V  VEK DP
Sbjct: 136 VIQFFTYQYETVGQRIHQRVGDVEKVDP 163


>pdb|1WNF|A Chain A, Crystal Structure Of Ph0066 From Pyrococcus Horikoshii
 pdb|1WNF|B Chain B, Crystal Structure Of Ph0066 From Pyrococcus Horikoshii
          Length = 328

 Score = 28.1 bits (61), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 18/95 (18%)

Query: 161 PRKWRLAPTRREQDKWDKATKAATGGSDVMFRE-------LRKP------RGDPEVLAAQ 207
           P  W       E++ W+      T G+D M          LR P       G    +  +
Sbjct: 57  PSDWERLAKEIEKEVWEYDGIVITHGTDTMAYSASMLSFMLRNPPIPIVLTGSMLPITEK 116

Query: 208 SKEQYFKLKSKLQFLTLGIGGVGLVSAYISYSPEI 242
           + +  F L++ L+F+ LGI G+     YI+++ ++
Sbjct: 117 NSDAPFNLRTALEFVKLGIRGI-----YIAFNGKV 146


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.134    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,943,535
Number of Sequences: 62578
Number of extensions: 346917
Number of successful extensions: 673
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 671
Number of HSP's gapped (non-prelim): 5
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)