BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019124
(346 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P08443|ATPZ_SYNP6 ATP synthase protein I OS=Synechococcus sp. (strain ATCC 27144 /
PCC 6301 / SAUG 1402/1) GN=atpI PE=3 SV=1
Length = 118
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 15/125 (12%)
Query: 211 QYFKLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAG 270
+Y+ L+ +L +TL V + + +YS AAS+ G +G L+Y+RMLG V+ +
Sbjct: 3 EYYALQRQLLQVTLICTVVIFGAVWWAYSLNTAASYLLGAMGGLLYLRMLGKAVERI--- 59
Query: 271 AKGLMKGAVGQPRLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATFFQA 330
G + G+ RL + VVL+++ RW +LEL+P+ +GF TYK A +
Sbjct: 60 --GERRRQFGKSRLALFVVLIVLAARWQ----------YLELMPVFLGFLTYKAALIWYT 107
Query: 331 VEEAV 335
+ +
Sbjct: 108 LRAVI 112
>sp|P12403|ATPZ_NOSS1 ATP synthase protein I OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=atpI PE=3 SV=2
Length = 122
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 67/125 (53%), Gaps = 15/125 (12%)
Query: 210 EQYFKLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAA 269
+++++L +L +TL + GV +S +I YS IA ++ G +VY+RML V+ +
Sbjct: 2 QEFYQLYQELVLITLVLTGVVFISVWIFYSLNIALNYLLGACTGVVYLRMLAKDVERL-- 59
Query: 270 GAKGLMKGAVGQPRLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATFFQ 329
G K ++ + RL + + L+++ +RWN+ L+++P+ +GF TYK
Sbjct: 60 ---GREKQSLSKTRLALLMALILLASRWNQ----------LQIMPIFLGFLTYKATLIIY 106
Query: 330 AVEEA 334
V A
Sbjct: 107 VVRVA 111
>sp|Q05376|ATPZ_SYNP1 ATP synthase protein I OS=Synechococcus sp. (strain PCC 6716)
GN=atpI PE=3 SV=2
Length = 115
Score = 53.5 bits (127), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 15/115 (13%)
Query: 211 QYFKLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAG 270
++++L +L +L + + + ++ Y A ++ G SL+Y+R+L V+ +
Sbjct: 3 EFYQLCRELFTTSLVLMAIAFGTVWVIYDLNTALNYLLGASASLIYLRLLARNVERLGHD 62
Query: 271 AKGLMKGAVGQPRLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTYKIA 325
K L G+ +LLV V ++++ RW+E L +IP+ +GF TYK A
Sbjct: 63 QKKL-----GKTQLLVVVAVIILAARWHE----------LHIIPVFLGFLTYKAA 102
>sp|P27196|ATPZ_SYNY3 ATP synthase protein I OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=atpI PE=3 SV=1
Length = 117
Score = 40.0 bits (92), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 15/125 (12%)
Query: 212 YFKLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAGA 271
+++L+ +L TL + V YS IA ++ G L LVY+++L V+ + A
Sbjct: 4 FYRLQRQLLTWTLVATAIIFVCVVWVYSLNIALNYLLGALVGLVYLKLLAKDVERIGA-- 61
Query: 272 KGLMKGAVGQPRLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATFFQAV 331
G G L V V L++I + +LE++P+ +GF TYK A F +
Sbjct: 62 ---QSGRAGVKGLAVFVGLIIIATQRE----------NLEVLPIFLGFLTYKAAIIFYML 108
Query: 332 EEAVS 336
+ +
Sbjct: 109 QSVFT 113
>sp|Q10341|CYS2_SCHPO Probable serine-O-acetyltransferase cys2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cys2 PE=1 SV=1
Length = 504
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 11/103 (10%)
Query: 37 LPKKKSMKWSTGVAPGEYGGPPTTTKLRKFWGGEKEDPLTSDEFIWNNDFMPRMKRLIED 96
+P MK + VA Y P + + +G + DP S F DF LIE
Sbjct: 280 VPPHTGMKLAREVATISYRSGP---EWEQRFGNRRADPSVSPAFC--PDF------LIET 328
Query: 97 TDESSAEKFPVQEEPSGFLSLNRVMSLDSLEVDLSKELTADSK 139
+ + EKF +Q +P+ L +++ M + + + L+ + K
Sbjct: 329 YLDHAGEKFCLQYDPNSLLYISKAMDMHDMSASHQRSLSENRK 371
>sp|P09323|PTW3C_ECOLI PTS system N-acetylglucosamine-specific EIICBA component
OS=Escherichia coli (strain K12) GN=nagE PE=4 SV=1
Length = 648
Score = 31.6 bits (70), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 294 YNRWNEITVPEY--GFLHLELIPMLVGFFTYKIATFFQAV 331
YNRW++I +P++ F +P+ GFF +A F V
Sbjct: 112 YNRWSDIKLPDFLSFFGGKRFVPIATGFFCLVLAAIFGYV 151
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,534,376
Number of Sequences: 539616
Number of extensions: 5612622
Number of successful extensions: 12840
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 12773
Number of HSP's gapped (non-prelim): 87
length of query: 346
length of database: 191,569,459
effective HSP length: 118
effective length of query: 228
effective length of database: 127,894,771
effective search space: 29160007788
effective search space used: 29160007788
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)