Query 019127
Match_columns 346
No_of_seqs 106 out of 121
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 06:54:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019127.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019127hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03899 ATP_synt_I: ATP synth 98.1 1.3E-05 2.7E-10 63.2 7.8 93 219-320 2-100 (100)
2 PF12966 AtpR: N-ATPase, AtpR 94.2 0.15 3.2E-06 41.6 6.1 78 241-329 2-81 (85)
3 PRK05760 F0F1 ATP synthase sub 92.3 1.1 2.4E-05 38.8 8.8 103 219-335 10-118 (124)
4 PRK06099 F0F1 ATP synthase sub 89.3 1.8 3.8E-05 38.0 7.4 87 235-335 30-120 (126)
5 PRK08049 F0F1 ATP synthase sub 87.5 9.7 0.00021 33.4 10.8 102 215-334 10-120 (124)
6 COG3312 AtpI F0F1-type ATP syn 80.1 21 0.00044 31.9 9.7 41 214-255 10-50 (128)
7 PF14362 DUF4407: Domain of un 73.6 18 0.00038 34.7 8.2 90 207-297 10-100 (301)
8 PF06738 DUF1212: Protein of u 69.1 18 0.00039 32.1 6.7 66 190-259 73-145 (193)
9 PRK10862 SoxR reducing system 61.5 32 0.00069 30.7 6.8 59 208-266 68-130 (154)
10 PF11712 Vma12: Endoplasmic re 55.4 69 0.0015 27.9 7.7 59 209-267 69-138 (142)
11 PLN00097 photosystem I light h 55.1 6.4 0.00014 38.2 1.4 22 34-55 45-66 (244)
12 PF04148 Erv26: Transmembrane 53.7 71 0.0015 30.6 8.0 77 207-296 32-108 (211)
13 PF04246 RseC_MucC: Positive r 50.9 44 0.00095 28.5 5.7 59 208-266 61-123 (135)
14 PF12794 MscS_TM: Mechanosensi 48.8 53 0.0011 32.6 6.7 70 169-247 265-334 (340)
15 PRK08378 hypothetical protein; 45.0 86 0.0019 26.5 6.4 47 216-262 25-76 (93)
16 COG4965 TadB Flp pilus assembl 45.0 83 0.0018 31.7 7.3 41 218-258 83-123 (309)
17 COG3086 RseC Positive regulato 44.0 69 0.0015 29.4 6.0 62 206-267 66-131 (150)
18 TIGR03165 F1F0_chp_2 F1/F0 ATP 43.3 67 0.0014 26.6 5.4 29 241-269 2-30 (83)
19 PLN00048 photosystem I light h 42.2 30 0.00064 34.0 3.7 21 35-55 44-64 (262)
20 PF06166 DUF979: Protein of un 40.9 53 0.0012 33.1 5.3 59 205-263 79-144 (308)
21 PF07895 DUF1673: Protein of u 40.0 1.1E+02 0.0024 28.6 6.9 26 236-262 151-176 (205)
22 COG0109 CyoE Polyprenyltransfe 35.2 2E+02 0.0044 29.0 8.3 107 207-322 16-132 (304)
23 PF12597 DUF3767: Protein of u 34.6 1.3E+02 0.0027 26.2 6.0 45 218-262 42-92 (118)
24 PF02517 Abi: CAAX protease se 33.2 1.7E+02 0.0036 22.4 6.0 38 221-258 37-74 (91)
25 PLN00100 light-harvesting comp 32.5 32 0.0007 33.5 2.3 21 35-55 37-57 (246)
26 PF00584 SecE: SecE/Sec61-gamm 32.3 76 0.0016 23.4 3.8 35 216-250 21-55 (57)
27 COG5415 Predicted integral mem 32.2 2.4E+02 0.0052 27.6 7.9 50 208-258 34-87 (251)
28 PF03030 H_PPase: Inorganic H+ 31.4 78 0.0017 35.1 5.1 48 215-262 40-94 (682)
29 PF03907 Spo7: Spo7-like prote 30.7 2.1E+02 0.0045 27.5 7.2 33 206-238 15-47 (207)
30 PF04418 DUF543: Domain of unk 30.7 64 0.0014 26.2 3.3 43 215-257 26-68 (75)
31 PF10112 Halogen_Hydrol: 5-bro 29.6 1.1E+02 0.0025 27.6 5.2 32 226-257 17-48 (199)
32 PRK00733 hppA membrane-bound p 29.2 2.3E+02 0.0049 31.6 8.1 28 235-262 50-79 (666)
33 PRK07597 secE preprotein trans 29.1 88 0.0019 23.8 3.7 34 216-249 29-62 (64)
34 PF13244 DUF4040: Domain of un 28.6 2.5E+02 0.0054 22.1 6.3 47 216-262 14-65 (70)
35 TIGR00964 secE_bact preprotein 27.2 1E+02 0.0022 23.0 3.7 34 216-249 20-53 (55)
36 COG3808 OVP1 Inorganic pyropho 26.8 99 0.0021 33.9 4.8 39 216-254 53-91 (703)
37 COG0344 Predicted membrane pro 26.4 69 0.0015 30.4 3.3 32 242-273 9-42 (200)
38 PRK11646 multidrug resistance 26.0 5.5E+02 0.012 24.9 9.5 28 208-235 3-30 (400)
39 PF06946 Phage_holin_5: Phage 25.8 1E+02 0.0022 26.2 3.9 14 243-256 38-51 (93)
40 PF06645 SPC12: Microsomal sig 25.6 2E+02 0.0044 23.0 5.4 38 217-254 10-49 (76)
41 COG4818 Predicted membrane pro 24.9 69 0.0015 27.7 2.7 20 240-259 5-24 (105)
42 PF10864 DUF2663: Protein of u 23.4 4.4E+02 0.0096 23.6 7.5 15 208-222 9-23 (130)
43 PLN03199 delta6-acyl-lipid des 23.4 2.5E+02 0.0054 29.4 7.0 23 237-259 153-175 (485)
44 COG2966 Uncharacterized conser 23.3 2.3E+02 0.005 27.5 6.3 64 190-254 95-162 (250)
45 PRK09917 hypothetical protein; 23.2 2.7E+02 0.0059 25.1 6.3 91 223-325 16-106 (157)
46 PF14476 Chloroplast_duf: Peta 22.1 2.9E+02 0.0063 28.0 6.8 27 198-224 182-208 (313)
47 PLN02975 complex I subunit 21.9 1.4E+02 0.0031 25.5 4.0 42 224-267 35-82 (97)
48 PF15110 TMEM141: TMEM141 prot 21.8 2.6E+02 0.0057 23.9 5.5 57 205-261 13-80 (94)
49 KOG2890 Predicted membrane pro 21.7 66 0.0014 32.7 2.3 28 238-265 195-222 (326)
50 COG0690 SecE Preprotein transl 21.4 1.5E+02 0.0032 23.6 3.9 46 202-247 21-70 (73)
51 PLN00101 Photosystem I light-h 21.0 1.4E+02 0.0031 29.2 4.4 21 35-55 55-75 (250)
No 1
>PF03899 ATP_synt_I: ATP synthase I chain; InterPro: IPR005598 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The atp operon of most prokaryotes contains the structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein of unknown function. A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex []. A role in magnesium uptake has also been suggested []. More information about this protein can be found at Protein of the Month: ATP synthases [].
Probab=98.12 E-value=1.3e-05 Score=63.25 Aligned_cols=93 Identities=20% Similarity=0.258 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc----cccccC--CCCCCchHHHHHHHH
Q 019127 219 LQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAGA----KGLMKG--AVGQPRLLVPVVLVM 292 (346)
Q Consensus 219 LLl~Tl~igavg~~~~~l~ys~~~AlSyllGa~gGllYLrLL~rsVD~Lg~g~----~g~~kg--algqpRLLVPV~Lvv 292 (346)
+...++.+++++.+.+++.++.+.++|+++|++.+++...++.+.++++.+.. ++..+. ..---|+++-+++++
T Consensus 2 i~~~~~~l~~~~~~~~~~~~~~~~~~s~~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~R~~l~~~~~~ 81 (100)
T PF03899_consen 2 IVIIQLILLAVLALVFFLFFGWPVALSFLLGGLISLLNFFLLARRVFRLAGALAMDPGRAVRAMYLGYFIRLALTILLFI 81 (100)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999999999999999999999996664211 111110 012257888888888
Q ss_pred HHHHhhccccCCccccchhHHHHHHHHH
Q 019127 293 IYNRWNEITVPEYGFLHLELIPMLVGFF 320 (346)
Q Consensus 293 ~a~rwn~i~~p~~g~~~LeLlP~llGFL 320 (346)
+..++.. +++.++.++||+
T Consensus 82 ~~~~~~~---------~~~~~~~~~Gl~ 100 (100)
T PF03899_consen 82 LAFKFPP---------ELNPIALLIGLL 100 (100)
T ss_pred HHHHHHc---------ccHHHHHHHHHC
Confidence 8888832 488999999985
No 2
>PF12966 AtpR: N-ATPase, AtpR subunit
Probab=94.18 E-value=0.15 Score=41.63 Aligned_cols=78 Identities=21% Similarity=0.221 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCC--CchHHHHHHHHHHHHhhccccCCccccchhHHHHHHH
Q 019127 241 EIAASFAAGLLGSLVYIRMLGSTVDSMAAGAKGLMKGAVGQ--PRLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVG 318 (346)
Q Consensus 241 ~~AlSyllGa~gGllYLrLL~rsVD~Lg~g~~g~~kgalgq--pRLLVPV~Lvv~a~rwn~i~~p~~g~~~LeLlP~llG 318 (346)
+.+..+++|.+.|.+|..-|-.+|.++..+.+.. .--.++ .|+.+.++...+.++.+ ...++..++|
T Consensus 2 ~~~~~~~~G~~lG~~yF~gLw~tvr~~~~~~~p~-~~~~~S~l~R~~l~~~~f~~~~~~~----------~~~lL~~l~G 70 (85)
T PF12966_consen 2 QLLLAFLAGLLLGALYFGGLWWTVRRLLASKRPA-LWFLLSFLLRLALVLAGFYLLAQGG----------WWRLLACLLG 70 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcH-HHHHHHHHHHHHHHHHHHHHHHhCC----------HHHHHHHHHH
Confidence 3578899999999999999999999996432110 001122 45666555554444332 2668999999
Q ss_pred HHHHHHHHHHH
Q 019127 319 FFTYKIATFFQ 329 (346)
Q Consensus 319 FLTYK~AlLvq 329 (346)
|++.+..++..
T Consensus 71 F~~aR~i~~r~ 81 (85)
T PF12966_consen 71 FLLARFIVLRR 81 (85)
T ss_pred HHHHHHHHHHH
Confidence 99998877654
No 3
>PRK05760 F0F1 ATP synthase subunit I; Validated
Probab=92.28 E-value=1.1 Score=38.77 Aligned_cols=103 Identities=14% Similarity=0.118 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHhHhhhccCHHHHHHHHHHHHHHHH----HHHHHHHhhhhhccc--ccccccCCCCCCchHHHHHHHH
Q 019127 219 LQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLV----YIRMLGSTVDSMAAG--AKGLMKGAVGQPRLLVPVVLVM 292 (346)
Q Consensus 219 LLl~Tl~igavg~~~~~l~ys~~~AlSyllGa~gGll----YLrLL~rsVD~Lg~g--~~g~~kgalgqpRLLVPV~Lvv 292 (346)
++..=++++.++++.+++..+.+.|.|+++|++.+++ |.+.+-|+...=..+ ...-..|-.. .+++-+++.+
T Consensus 10 ~l~~Q~~~~l~~a~~~~~~~~~~~a~Sal~Ggl~~~lP~~~Fa~~~fr~~g~~~~~~i~~~fy~GE~~--K~~lTi~lf~ 87 (124)
T PRK05760 10 LLLIQLVVVLVAALVLWVAVGPVWGYSALIGGLIAVLANAYFAHCAFRFSGARAAKAIVRSFYAGEAG--KIIITAVLFA 87 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 4444555666666666777899999999999998765 444444443111000 0000011111 2444445544
Q ss_pred HHHHhhccccCCccccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 019127 293 IYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATFFQAVEEAV 335 (346)
Q Consensus 293 ~a~rwn~i~~p~~g~~~LeLlP~llGFLTYK~AlLvqa~rdv~ 335 (346)
++-+|-. +++..+.|.||+ .++.++-+-+.+
T Consensus 88 l~f~~~~---------~l~~~~lf~gf~---l~l~~~w~aP~~ 118 (124)
T PRK05760 88 LAFAGVQ---------PLLPPLKFGTYL---LVLGVNWFAPLL 118 (124)
T ss_pred HHHHHhc---------hhhHHHHHHHHH---HHHHHHHHHHHH
Confidence 4444421 355555555655 577776665544
No 4
>PRK06099 F0F1 ATP synthase subunit I; Validated
Probab=89.35 E-value=1.8 Score=38.02 Aligned_cols=87 Identities=18% Similarity=0.332 Sum_probs=46.4
Q ss_pred hhccCHHHHHHHHHHHHHHHH---HHHHHH-HhhhhhcccccccccCCCCCCchHHHHHHHHHHHHhhccccCCccccch
Q 019127 235 YISYSPEIAASFAAGLLGSLV---YIRMLG-STVDSMAAGAKGLMKGAVGQPRLLVPVVLVMIYNRWNEITVPEYGFLHL 310 (346)
Q Consensus 235 ~l~ys~~~AlSyllGa~gGll---YLrLL~-rsVD~Lg~g~~g~~kgalgqpRLLVPV~Lvv~a~rwn~i~~p~~g~~~L 310 (346)
+...|.+.|+|+++|++.+++ |.-++. ++-.+-..-.+.-..|-.+ .+++-+++++++=.|=. ++
T Consensus 30 ~~~~~~~~a~Sal~Ggli~~LPn~~Fa~~aF~~~~~~~~~~~sFy~GE~~--K~ilTivlf~laf~~~~---------~~ 98 (126)
T PRK06099 30 LLIWQGQSAVSFLLGFLSAFLPFCLFVYWIFFRKQKNSSKLTAFYRGEAI--KFILTIVLIVIAFKLLP---------VL 98 (126)
T ss_pred HHHhhHHHHHHHHHhhHHHHHhHHHHHHHHHHhccchHHHHHHHHHHhHH--HHHHHHHHHHHHHHHhh---------hh
Confidence 445799999999999999874 444443 2211110000000011112 24444444444433321 38
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh
Q 019127 311 ELIPMLVGFFTYKIATFFQAVEEAV 335 (346)
Q Consensus 311 eLlP~llGFLTYK~AlLvqa~rdv~ 335 (346)
+.+|.++||+. +++++-+-+..
T Consensus 99 ~~~~lf~~y~l---~l~~~~~aP~~ 120 (126)
T PRK06099 99 HFIAFFVGFFI---ALVLNNLIPFI 120 (126)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHH
Confidence 89999888874 66666655543
No 5
>PRK08049 F0F1 ATP synthase subunit I; Validated
Probab=87.45 E-value=9.7 Score=33.40 Aligned_cols=102 Identities=18% Similarity=0.168 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhccCHHHHHHHHHHHHHHHH---HHHHHH-Hhhhhhccccccc-----ccCCCCCCchH
Q 019127 215 LKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLV---YIRMLG-STVDSMAAGAKGL-----MKGAVGQPRLL 285 (346)
Q Consensus 215 LK~~LLl~Tl~igavg~~~~~l~ys~~~AlSyllGa~gGll---YLrLL~-rsVD~Lg~g~~g~-----~kgalgqpRLL 285 (346)
|-+++++.=+++..+.++ +|...+.+.|.|.++|++..++ |.-+.. |+-.. ...++. ..|-.. .++
T Consensus 10 la~klll~Q~~~~~~~s~-~~~~~~~~~~~Sal~Ggl~~~lPn~~Fa~~afr~~~~--~~a~~~v~~sFy~GE~l--K~~ 84 (124)
T PRK08049 10 VARKLLLLQLLTFVASGA-LFSLKDPFWGVSALAGGLAAWLPNVLFMIFAWRHQAH--TPAKGRVAWSFAFGEAL--KVL 84 (124)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHcCHHHHHHHHHhhHHHHHhHHHHHHHHHHhccc--cchHHHHHHHHHHHHHH--HHH
Confidence 334445544444444443 4666799999999999998875 222111 22100 000000 011111 255
Q ss_pred HHHHHHHHHHHhhccccCCccccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 019127 286 VPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATFFQAVEEA 334 (346)
Q Consensus 286 VPV~Lvv~a~rwn~i~~p~~g~~~LeLlP~llGFLTYK~AlLvqa~rdv 334 (346)
+-++|++++-+|= +.+.+|.++||+. ++.++-+-+.
T Consensus 85 lTi~lf~~af~~~----------~~~~~plf~ty~l---~L~~~~~aP~ 120 (124)
T PRK08049 85 ATIALLVVALGVF----------KAVFLPLGLTWLS---VLVVQILAPA 120 (124)
T ss_pred HHHHHHHHHHHHH----------hHHHHHHHHHHHH---HHHHHHHHHH
Confidence 5555555555553 2457788888874 6666665544
No 6
>COG3312 AtpI F0F1-type ATP synthase, subunit I [Energy production and conversion]
Probab=80.10 E-value=21 Score=31.92 Aligned_cols=41 Identities=22% Similarity=0.309 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhccCHHHHHHHHHHHHHHHH
Q 019127 214 KLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLV 255 (346)
Q Consensus 214 ~LK~~LLl~Tl~igavg~~~~~l~ys~~~AlSyllGa~gGll 255 (346)
+.+++|++.-+++..+..+ ++..++++.++|++.|+.+-++
T Consensus 10 k~ar~lLliql~~~ivaa~-~f~v~~~~~~vSal~Ggla~~L 50 (128)
T COG3312 10 KVARKLLLIQLLVVIVAAL-LFAVWQPQWGVSALLGGLAAFL 50 (128)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHhccHHHHH
Confidence 4566777777666554444 5555679999999999887653
No 7
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=73.58 E-value=18 Score=34.71 Aligned_cols=90 Identities=19% Similarity=0.289 Sum_probs=50.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcccccccccCCCCCCchH
Q 019127 207 QSKEQYFKLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTV-DSMAAGAKGLMKGAVGQPRLL 285 (346)
Q Consensus 207 esm~EY~~LK~~LLl~Tl~igavg~~~~~l~ys~~~AlSyllGa~gGllYLrLL~rsV-D~Lg~g~~g~~kgalgqpRLL 285 (346)
.+...|..+=--++.+.+..++.++..++..++.....+.++|.+-|++.+.+ .|.+ -++........+....-+|++
T Consensus 10 ~er~k~~~~G~~vl~ta~la~~s~~~a~~~~~~~~~~~ai~~glvwgl~I~~l-DR~ivss~~~~~~~~~~~~~~~~R~~ 88 (301)
T PF14362_consen 10 AERNKYAGIGAAVLFTALLAGLSGGYALYTVFGGPVWAAIPFGLVWGLVIFNL-DRFIVSSIRKSDGSRKRLLQALPRLL 88 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH-HHHHHhccccccchHHHHHHHHHHHH
Confidence 45667776666666655555555555555666766688888888888887643 2222 222211000000012346777
Q ss_pred HHHHHHHHHHHh
Q 019127 286 VPVVLVMIYNRW 297 (346)
Q Consensus 286 VPV~Lvv~a~rw 297 (346)
+-+++.++.+..
T Consensus 89 lAvliaivIs~p 100 (301)
T PF14362_consen 89 LAVLIAIVISEP 100 (301)
T ss_pred HHHHHHHHHHHH
Confidence 766666666654
No 8
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=69.09 E-value=18 Score=32.15 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=37.9
Q ss_pred hhhcccCCCCChHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHhHhhhccC--HHHHHHHHHHHHHHHHHHHH
Q 019127 190 MFRELRKPRGDPEVLAAQSKEQYFKLKS-----KLQFLTLGIGGVGLVSAYISYS--PEIAASFAAGLLGSLVYIRM 259 (346)
Q Consensus 190 ~~~e~~~~~~dp~~~aaesm~EY~~LK~-----~LLl~Tl~igavg~~~~~l~ys--~~~AlSyllGa~gGllYLrL 259 (346)
+.++....+.+++. ..++..++++ ......++.+..+++++.++.+ .+..+++++|++++++...+
T Consensus 73 l~~~~~~~~~~~~e----a~~~L~~I~~~~~~y~~~~~~l~~~l~~~~fa~lfgg~~~~~~~a~i~g~~~~~~~~~~ 145 (193)
T PF06738_consen 73 LSRRIVAGQLSLEE----AIERLDEIDREPPRYPPWLVILAAGLASAAFALLFGGSWIDMIVAFILGLLVGLLRQLL 145 (193)
T ss_pred HHHHHhcCCCCHHH----HHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555553 3333333332 2344455555555565666544 78888888888888777664
No 9
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=61.54 E-value=32 Score=30.74 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH----HhHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019127 208 SKEQYFKLKSKLQFLTLGIGGVG----LVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDS 266 (346)
Q Consensus 208 sm~EY~~LK~~LLl~Tl~igavg----~~~~~l~ys~~~AlSyllGa~gGllYLrLL~rsVD~ 266 (346)
++.|-.=||-.++.|-+=+-++. ....+.....-++++.++|.+.||+++|++.+....
T Consensus 68 ~i~e~~llkaa~lvYllPLl~li~ga~l~~~~~~~e~~~~~~~~~g~~~g~~~~r~~~~~~~~ 130 (154)
T PRK10862 68 GIAEGSLLRSALLVYMTPLVGLFLGAALFQLLFGSDLAALCGALLGGVGGFLLARGLSRKLAA 130 (154)
T ss_pred ecchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 67777777888877643322221 122222234555667788999999999999988775
No 10
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=55.41 E-value=69 Score=27.87 Aligned_cols=59 Identities=14% Similarity=0.103 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHhHhh--h--c-cCHHHHHHHHHHHHHHHH----HHHHHHHhhhhh
Q 019127 209 KEQYFKLKSKLQFL--TLGIGGVGLVSAY--I--S-YSPEIAASFAAGLLGSLV----YIRMLGSTVDSM 267 (346)
Q Consensus 209 m~EY~~LK~~LLl~--Tl~igavg~~~~~--l--~-ys~~~AlSyllGa~gGll----YLrLL~rsVD~L 267 (346)
.+++.+.|+.+... -++-.+.++.+.| . + ++.+.+.-.++|.++|++ =+.++.++...+
T Consensus 69 ~~~~k~~~~qls~v~Nilvsv~~~~~~~~~~~~~~~~~~~~~~Rvllgl~~al~vlvAEv~l~~~y~~k~ 138 (142)
T PF11712_consen 69 AQELKSVKRQLSTVFNILVSVFAVFFAGWYWAGYSFGGWSFPYRVLLGLFGALLVLVAEVVLYIRYLRKV 138 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45566666665443 2222222333333 1 1 245666666666655554 334444444443
No 11
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=55.12 E-value=6.4 Score=38.20 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.5
Q ss_pred ccccCCcCccccccCCCCCCCC
Q 019127 34 KILLPKKKSMKWSTGVAPGEYG 55 (346)
Q Consensus 34 ~~~~~~~k~~~w~~g~~pg~yg 55 (346)
...+|..+|-.|=+|.-|||||
T Consensus 45 ~~w~Pg~~~P~~LdG~~pGD~G 66 (244)
T PLN00097 45 PTWLPGKAAAAHLDGSLPCDYG 66 (244)
T ss_pred cccCCCCCCccccCCCCCCCCC
Confidence 3567988999999999999998
No 12
>PF04148 Erv26: Transmembrane adaptor Erv26; InterPro: IPR007277 Erv26 is an integral membrane protein that is packed into COPII vesicles and cycles between the ER and Golgi compartments. It directs pro-alkaline phosphatase into endoplasmic reticulum-derived COPII transport vesicles [].
Probab=53.71 E-value=71 Score=30.55 Aligned_cols=77 Identities=18% Similarity=0.136 Sum_probs=57.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCCchHH
Q 019127 207 QSKEQYFKLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAGAKGLMKGAVGQPRLLV 286 (346)
Q Consensus 207 esm~EY~~LK~~LLl~Tl~igavg~~~~~l~ys~~~AlSyllGa~gGllYLrLL~rsVD~Lg~g~~g~~kgalgqpRLLV 286 (346)
|=-|||-.+-++.+..+.....+.-+..+++-+...- .-++|.+.-++|+++| |.-=-+ .+.+|.++.
T Consensus 32 ElVEEht~~akril~~~I~~ii~~~vlL~~~D~~P~~-~~l~si~s~~~Y~~~L-~~fP~i----------~ltsp~Fi~ 99 (211)
T PF04148_consen 32 ELVEEHTVLAKRILKRLIYFIIALHVLLLLFDGFPFW-LTLFSIFSHLVYLRNL-RTFPFI----------SLTSPSFIL 99 (211)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHHh-CCCCee----------ecCCHHHHH
Confidence 5569999999999998888888777777777776655 4568999999999999 433332 256788888
Q ss_pred HHHHHHHHHH
Q 019127 287 PVVLVMIYNR 296 (346)
Q Consensus 287 PV~Lvv~a~r 296 (346)
-+++++ .+-
T Consensus 100 S~~lvi-~nH 108 (211)
T PF04148_consen 100 SCVLVI-LNH 108 (211)
T ss_pred HHHHHH-HHH
Confidence 777764 443
No 13
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=50.95 E-value=44 Score=28.50 Aligned_cols=59 Identities=12% Similarity=-0.030 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----hHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019127 208 SKEQYFKLKSKLQFLTLGIGGVGL----VSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDS 266 (346)
Q Consensus 208 sm~EY~~LK~~LLl~Tl~igavg~----~~~~l~ys~~~AlSyllGa~gGllYLrLL~rsVD~ 266 (346)
+++|=.-+|..++.+-+=+.++.. ++.+.....-.++..++|.+.|++++|++.|...+
T Consensus 61 ~i~~~~~~~aa~l~Y~lPll~li~g~~l~~~~~~~e~~~~l~~l~~l~~~~~~~~~~~~~~~~ 123 (135)
T PF04246_consen 61 EIPESSLLKAAFLVYLLPLLALIAGAVLGSYLGGSELWAILGGLLGLALGFLILRLFDRRLKK 123 (135)
T ss_pred EeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 455555667777777543333322 22222235566777788888888888888887665
No 14
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=48.76 E-value=53 Score=32.64 Aligned_cols=70 Identities=17% Similarity=0.076 Sum_probs=36.0
Q ss_pred ChHHHHHHHHhhhhccCCcchhhhcccCCCCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCHHHHHHHH
Q 019127 169 TRREQDKWDKATKAATGGSDVMFRELRKPRGDPEVLAAQSKEQYFKLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFA 247 (346)
Q Consensus 169 Tr~Eq~~w~ra~ka~t~~s~v~~~e~~~~~~dp~~~aaesm~EY~~LK~~LLl~Tl~igavg~~~~~l~ys~~~AlSyl 247 (346)
.|||+...+|+.+....+.+....+.+.+..|-+...++++ +|+...+.++++ .+..|+..+.-.|+||+
T Consensus 265 ~kR~~~~aqr~~~e~~~~~e~~~~~~ee~~ldl~~I~~Qsl--------rL~~~~l~~~~~-~~l~~iWsdll~a~s~L 334 (340)
T PF12794_consen 265 EKRAEALAQREAEEEESSEEGGAEEVEEPELDLEQISQQSL--------RLLRSILLLILL-VGLYWIWSDLLPAFSYL 334 (340)
T ss_pred HHHHHHHHhhhcccccCCccccCCCcCCcccCHHHHHHHHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 35666666666221112233233345556666665554443 344444433333 33345667888889886
No 15
>PRK08378 hypothetical protein; Provisional
Probab=45.00 E-value=86 Score=26.52 Aligned_cols=47 Identities=23% Similarity=0.265 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhHhhhc---cCHHHHHHHHH--HHHHHHHHHHHHHH
Q 019127 216 KSKLQFLTLGIGGVGLVSAYIS---YSPEIAASFAA--GLLGSLVYIRMLGS 262 (346)
Q Consensus 216 K~~LLl~Tl~igavg~~~~~l~---ys~~~AlSyll--Ga~gGllYLrLL~r 262 (346)
.+.|+......++.++.++.++ .-+++|+..+. .++.+.+||.-|.+
T Consensus 25 ~rdLl~avi~~~~~sll~al~~~~L~APDVAltEAAVGAGlst~l~l~al~~ 76 (93)
T PRK08378 25 WRDLLAAAVGMAAVSLFASLEFFMLQAPDVAMAEAAIGAALSTAVVIFAIKR 76 (93)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4566666666666666555543 46999999887 57788888888865
No 16
>COG4965 TadB Flp pilus assembly protein TadB [Intracellular trafficking and secretion]
Probab=44.96 E-value=83 Score=31.72 Aligned_cols=41 Identities=20% Similarity=0.129 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhHhhhccCHHHHHHHHHHHHHHHHHHH
Q 019127 218 KLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIR 258 (346)
Q Consensus 218 ~LLl~Tl~igavg~~~~~l~ys~~~AlSyllGa~gGllYLr 258 (346)
+++..+++.+.+.++..|+..++.+++.+++|+++...|++
T Consensus 83 ~~~~l~~~~~l~~~~v~~~~~~l~v~~~~~~~~~llp~~~~ 123 (309)
T COG4965 83 RLILLSAGAGLAVALVAWLGLSLLVALVALIGAALLPRLVL 123 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777999999999999999998887765
No 17
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=44.01 E-value=69 Score=29.38 Aligned_cols=62 Identities=18% Similarity=0.167 Sum_probs=42.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH---HhHhhhccC-HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019127 206 AQSKEQYFKLKSKLQFLTLGIGGVG---LVSAYISYS-PEIAASFAAGLLGSLVYIRMLGSTVDSM 267 (346)
Q Consensus 206 aesm~EY~~LK~~LLl~Tl~igavg---~~~~~l~ys-~~~AlSyllGa~gGllYLrLL~rsVD~L 267 (346)
+-+.+||.=||..++.+-+=+.++. ...-+++.+ .-+++..++|.+.|++-+|-..|....-
T Consensus 66 eiGi~EkslL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~~~~~~~lg~~l~fl~~r~ysRkl~~~ 131 (150)
T COG3086 66 ELGIEEKSLLKSALLVYIFPLVGLFLGAILAQYLFFSELIVIFGAFLGLALGFLLARRYSRKLAKR 131 (150)
T ss_pred EEccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3478888889998887743322221 122344444 7778888999999999888888776654
No 18
>TIGR03165 F1F0_chp_2 F1/F0 ATPase, Methanosarcina type, subunit 2. Members of this protein family are uncharacterized, highly hydrophobic proteins encoded in the middle of apparent F1/F0 ATPase operons. We note, however, that this protein is both broadly and sparsely distributed. It is found in about only about two percent of microbial genomes sequenced, with the first ten examples found coming from the Euryarchaeota, Chlorobia, Betaproteobacteria, Deltaproteobacteria, and Planctomycetes. In most of these species, surrounding operon appears to represent a second F1/F0 ATPase system, and the member proteins belong to subfamilies with the same phylogenetic distribution as the current protein family.
Probab=43.27 E-value=67 Score=26.58 Aligned_cols=29 Identities=24% Similarity=0.160 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 019127 241 EIAASFAAGLLGSLVYIRMLGSTVDSMAA 269 (346)
Q Consensus 241 ~~AlSyllGa~gGllYLrLL~rsVD~Lg~ 269 (346)
+.+..+++|.+.|.+|..-|--.|-.+..
T Consensus 2 ~~~~~l~~G~~lG~~~F~gLw~tvr~~~~ 30 (83)
T TIGR03165 2 TLLLALLAGFLLGAFFFGGLWWTVRKGLA 30 (83)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35678999999999999999999999853
No 19
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=42.15 E-value=30 Score=33.97 Aligned_cols=21 Identities=29% Similarity=0.798 Sum_probs=19.0
Q ss_pred cccCCcCccccccCCCCCCCC
Q 019127 35 ILLPKKKSMKWSTGVAPGEYG 55 (346)
Q Consensus 35 ~~~~~~k~~~w~~g~~pg~yg 55 (346)
..+|..++-.|-+|.-|||||
T Consensus 44 ~w~p~~~~P~yLdG~lPGD~G 64 (262)
T PLN00048 44 LWFASKQSLSYLDGTLPGDFG 64 (262)
T ss_pred eecCCCCCccccCCCCCCccC
Confidence 456999999999999999998
No 20
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=40.93 E-value=53 Score=33.14 Aligned_cols=59 Identities=15% Similarity=0.145 Sum_probs=48.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCH-------HHHHHHHHHHHHHHHHHHHHHHh
Q 019127 205 AAQSKEQYFKLKSKLQFLTLGIGGVGLVSAYISYSP-------EIAASFAAGLLGSLVYIRMLGST 263 (346)
Q Consensus 205 aaesm~EY~~LK~~LLl~Tl~igavg~~~~~l~ys~-------~~AlSyllGa~gGllYLrLL~rs 263 (346)
.|+..++.++++.+|+.-.+.+..+..+.+.++-.. ...++..+|++.+++....+.|.
T Consensus 79 ~e~r~~~a~rlGnklFiPal~i~v~a~~~a~~~~~l~l~d~~~~tlv~lgig~i~Ali~a~~itk~ 144 (308)
T PF06166_consen 79 EEEREASAKRLGNKLFIPALLIPVVAVIGAQLFTKLPLLDPKNGTLVGLGIGAIVALIVALIITKP 144 (308)
T ss_pred HHHHHHHHHHhcCeehHHHHHHHHHHHHHHHHhccccccCCCcchHHHHHHHHHHHHHHHHHHhCC
Confidence 356777889999999999999999988888866666 67888999999999888777653
No 21
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=39.99 E-value=1.1e+02 Score=28.63 Aligned_cols=26 Identities=23% Similarity=0.172 Sum_probs=19.7
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHH
Q 019127 236 ISYSPEIAASFAAGLLGSLVYIRMLGS 262 (346)
Q Consensus 236 l~ys~~~AlSyllGa~gGllYLrLL~r 262 (346)
...+.+.-+||++|.+.. +++-.++.
T Consensus 151 ~~~~~~~~~sfl~g~~~~-~wl~y~q~ 176 (205)
T PF07895_consen 151 SFISFQSLLSFLSGLLLL-MWLVYFQI 176 (205)
T ss_pred HHhhHHHHHHHHHHHHHH-HHHHHHHH
Confidence 346788999999999888 66666554
No 22
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=35.23 E-value=2e+02 Score=29.00 Aligned_cols=107 Identities=16% Similarity=0.172 Sum_probs=59.7
Q ss_pred HhHHHHHHHHH----HHHHHHHHHHHHHHhHhhhccCHH----HHHHHHHHHHHHHHHHHHHHHhhhhh-cc-ccccccc
Q 019127 207 QSKEQYFKLKS----KLQFLTLGIGGVGLVSAYISYSPE----IAASFAAGLLGSLVYIRMLGSTVDSM-AA-GAKGLMK 276 (346)
Q Consensus 207 esm~EY~~LK~----~LLl~Tl~igavg~~~~~l~ys~~----~AlSyllGa~gGllYLrLL~rsVD~L-g~-g~~g~~k 276 (346)
..-++|.+|=. .|+..|...|.+.+.. ...++. +.++-.+|+.++.+.=-...|+.|.+ .. ..+...+
T Consensus 16 ~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~--~~~~~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~~~ 93 (304)
T COG0109 16 STIKDYLQLTKPRVISLLLITAFAGMLLAPR--GSINPLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVT 93 (304)
T ss_pred HHHHHHHHHhCCeeeehHHHHHHHHHHHccc--ccccHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCCCCCC
Confidence 44567777632 3444454444443331 223344 34455778889999999999999998 32 2345556
Q ss_pred CCCCCCchHHHHHHHHHHHHhhccccCCccccchhHHHHHHHHHHH
Q 019127 277 GAVGQPRLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTY 322 (346)
Q Consensus 277 galgqpRLLVPV~Lvv~a~rwn~i~~p~~g~~~LeLlP~llGFLTY 322 (346)
|.+....-+....+..+++..-. . +-...+++++|+++.
T Consensus 94 G~i~p~~al~fgl~L~~~g~~~l------~-~~vn~laa~l~~~gi 132 (304)
T COG0109 94 GLISPREALAFGLVLGVAGFSLL------W-FLVNLLAAVLGLFGI 132 (304)
T ss_pred CccCHHHHHHHHHHHHHHHHHHH------H-HHHHHHHHHHHHHHH
Confidence 66665555554433333333211 0 124567777777663
No 23
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=34.59 E-value=1.3e+02 Score=26.17 Aligned_cols=45 Identities=24% Similarity=0.121 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhHhhhccC-----HHHH-HHHHHHHHHHHHHHHHHHH
Q 019127 218 KLQFLTLGIGGVGLVSAYISYS-----PEIA-ASFAAGLLGSLVYIRMLGS 262 (346)
Q Consensus 218 ~LLl~Tl~igavg~~~~~l~ys-----~~~A-lSyllGa~gGllYLrLL~r 262 (346)
+=+++.++.|+++.+..|++.+ .|.| .+|++|+++++-|-|...+
T Consensus 42 ~slL~Gi~~G~~vG~~~fl~~~~~~~A~nwavgsF~l~s~~~we~Cr~~r~ 92 (118)
T PF12597_consen 42 DSLLYGIAGGFGVGGLRFLFTSNPRKAANWAVGSFFLGSLGSWEYCRYNRR 92 (118)
T ss_pred HHHHHHHHHHHHHHhhhhcccCCCccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555665543 3333 4788888999999887543
No 24
>PF02517 Abi: CAAX protease self-immunity; InterPro: IPR003675 Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide is removed by one of the CAAX prenyl proteases). The family contains the Q03530 from SWISSPROT CAAX prenyl protease []. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding []. While these proteins are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity []. This family also includes lysostaphin resistance protein A [].; GO: 0016020 membrane
Probab=33.24 E-value=1.7e+02 Score=22.40 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhHhhhccCHHHHHHHHHHHHHHHHHHH
Q 019127 221 FLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIR 258 (346)
Q Consensus 221 l~Tl~igavg~~~~~l~ys~~~AlSyllGa~gGllYLr 258 (346)
.....++++.++..-+..+......+.+|.+.|++|.+
T Consensus 37 ~~a~~is~~~f~~~H~~~~~~~~~~~~~g~~~~~~~~~ 74 (91)
T PF02517_consen 37 WFAILISSLLFALWHLPNGPQFIYAFLFGLLFGYLYLR 74 (91)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444555555544444455577777888888877764
No 25
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=32.48 E-value=32 Score=33.54 Aligned_cols=21 Identities=29% Similarity=0.664 Sum_probs=17.4
Q ss_pred cccCCcCccccccCCCCCCCC
Q 019127 35 ILLPKKKSMKWSTGVAPGEYG 55 (346)
Q Consensus 35 ~~~~~~k~~~w~~g~~pg~yg 55 (346)
..+|--++-.|=+|.-||+||
T Consensus 37 ~W~P~~~~P~~Ldg~~pGd~G 57 (246)
T PLN00100 37 MWYPGATAPKYLDGTMAGDYG 57 (246)
T ss_pred ccCCCCCCCCCCCCCCCCCcC
Confidence 456877777889999999997
No 26
>PF00584 SecE: SecE/Sec61-gamma subunits of protein translocation complex; InterPro: IPR001901 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. SecE, part of the main SecYEG translocase complex, is ~106 residues in length, and spans the inner membrane of the Gram-negative bacterial envelope. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. In eukaryotes, the evolutionary related protein sec61-gamma plays a role in protein translocation through the endoplasmic reticulum; it is part of a trimeric complex that also consist of sec61-alpha and beta []. Both secE and sec61-gamma are small proteins of about 60 to 90 amino acids that contain a single transmembrane region at their C-terminal extremity (Escherichia coli secE is an exception, in that it possess an extra N-terminal segment of 60 residues that contains two additional transmembrane domains) [].; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0016020 membrane; PDB: 3J01_B 2WW9_B 2WWA_B 3DL8_C 2WWB_B 3DIN_G 2ZJS_E 2ZQP_E.
Probab=32.28 E-value=76 Score=23.39 Aligned_cols=35 Identities=11% Similarity=0.071 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhhccCHHHHHHHHHHH
Q 019127 216 KSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGL 250 (346)
Q Consensus 216 K~~LLl~Tl~igavg~~~~~l~ys~~~AlSyllGa 250 (346)
|++++.+|.++..+..+.+.+++..+..+++++..
T Consensus 21 ~~e~~~~t~~Vl~~~~i~~~~~~~vD~~~~~~~~~ 55 (57)
T PF00584_consen 21 RKELLKSTIIVLVFVIIFGLFFFLVDLIFSWLLNL 55 (57)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888877777777777777888887777654
No 27
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=32.18 E-value=2.4e+02 Score=27.64 Aligned_cols=50 Identities=26% Similarity=0.412 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHhhh---ccCH-HHHHHHHHHHHHHHHHHH
Q 019127 208 SKEQYFKLKSKLQFLTLGIGGVGLVSAYI---SYSP-EIAASFAAGLLGSLVYIR 258 (346)
Q Consensus 208 sm~EY~~LK~~LLl~Tl~igavg~~~~~l---~ys~-~~AlSyllGa~gGllYLr 258 (346)
..-.-.+++.++...++++.+++..+.|+ .|++ ..-..|++| .+++.-.|
T Consensus 34 ~qs~l~~~~~r~tv~slAl~~l~~S~iy~~~~~y~~~~~It~~llg-s~slymfr 87 (251)
T COG5415 34 SQSILSQWQSRLTVYSLALTVLALSYIYWEYHGYRPYLVITALLLG-SGSLYMFR 87 (251)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccccchhHHHHHHHHh-hhHHHHHH
Confidence 44455678888889999999998877777 2444 444455666 44443333
No 28
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=31.42 E-value=78 Score=35.13 Aligned_cols=48 Identities=25% Similarity=0.224 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhc-----cCHHHHHHHHHHHHHHHH--HHHHHHH
Q 019127 215 LKSKLQFLTLGIGGVGLVSAYIS-----YSPEIAASFAAGLLGSLV--YIRMLGS 262 (346)
Q Consensus 215 LK~~LLl~Tl~igavg~~~~~l~-----ys~~~AlSyllGa~gGll--YLrLL~r 262 (346)
|||+.......+.+++.+..++. .+.-++++|++|++.|.+ |+-|.-.
T Consensus 40 L~reYk~i~~~~vi~~~ll~~~~~~~~~~~~~taiaFliGa~~S~laGyiGM~vA 94 (682)
T PF03030_consen 40 LKREYKTIAIFIVIVAILLFFLLGFLGGQGWWTAIAFLIGALCSALAGYIGMRVA 94 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555444444444433333332 278999999999998865 7766544
No 29
>PF03907 Spo7: Spo7-like protein; InterPro: IPR005605 Saccharomyces cerevisiae (Baker's yeast) Spo7 P18410 from SWISSPROT is an integral nuclear/ER membrane protein of unknown function, required for normal nuclear envelope morphology and sporulation [].
Probab=30.70 E-value=2.1e+02 Score=27.54 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=24.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 019127 206 AQSKEQYFKLKSKLQFLTLGIGGVGLVSAYISY 238 (346)
Q Consensus 206 aesm~EY~~LK~~LLl~Tl~igavg~~~~~l~y 238 (346)
+.=+++|.+||.+=-.+|+.+..++...++++|
T Consensus 15 esLR~q~~~lr~rrrkyt~FL~~L~~~i~~~~y 47 (207)
T PF03907_consen 15 ESLRQQYLQLRARRRKYTFFLSLLCLWIAFFFY 47 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578999988888888877777766666554
No 30
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=30.66 E-value=64 Score=26.16 Aligned_cols=43 Identities=21% Similarity=0.160 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhccCHHHHHHHHHHHHHHHHHH
Q 019127 215 LKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYI 257 (346)
Q Consensus 215 LK~~LLl~Tl~igavg~~~~~l~ys~~~AlSyllGa~gGllYL 257 (346)
|-.-|...++++++-+..+.+++-+.-.-+.+.+|...|.+|-
T Consensus 26 l~~~l~k~~~G~~~G~~~s~l~frrR~~pv~lG~G~G~G~aY~ 68 (75)
T PF04418_consen 26 LSDTLVKTGLGFGIGVVFSLLFFRRRAWPVALGAGFGIGMAYS 68 (75)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHccchHHHHhhcccccchhHH
Confidence 3445555666666666666667777777777788888888884
No 31
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=29.59 E-value=1.1e+02 Score=27.64 Aligned_cols=32 Identities=13% Similarity=0.295 Sum_probs=19.8
Q ss_pred HHHHHHhHhhhccCHHHHHHHHHHHHHHHHHH
Q 019127 226 IGGVGLVSAYISYSPEIAASFAAGLLGSLVYI 257 (346)
Q Consensus 226 igavg~~~~~l~ys~~~AlSyllGa~gGllYL 257 (346)
+++++++..++.++...-++.++|++++++..
T Consensus 17 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 48 (199)
T PF10112_consen 17 IAAITFLVSFFGFDHSFLLSLLIGAVAFAVVY 48 (199)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34444455555566777777777777766643
No 32
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=29.16 E-value=2.3e+02 Score=31.61 Aligned_cols=28 Identities=25% Similarity=0.157 Sum_probs=21.0
Q ss_pred hhccCHHHHHHHHHHHHHHHH--HHHHHHH
Q 019127 235 YISYSPEIAASFAAGLLGSLV--YIRMLGS 262 (346)
Q Consensus 235 ~l~ys~~~AlSyllGa~gGll--YLrLL~r 262 (346)
++..+..++++|++|++.|.+ |+-|.-.
T Consensus 50 ~~~~~~~~~~~Fl~Ga~~S~laG~iGM~ia 79 (666)
T PRK00733 50 GLFLGWLTAVAFLVGAVFSALAGYIGMRVA 79 (666)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677899999999998875 6666543
No 33
>PRK07597 secE preprotein translocase subunit SecE; Reviewed
Probab=29.05 E-value=88 Score=23.81 Aligned_cols=34 Identities=15% Similarity=-0.043 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHhHhhhccCHHHHHHHHHH
Q 019127 216 KSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAG 249 (346)
Q Consensus 216 K~~LLl~Tl~igavg~~~~~l~ys~~~AlSyllG 249 (346)
|+++..+|+.+..+..+.+.+++..+..+.++++
T Consensus 29 ~~e~~~~t~~Vi~~~~~~~~~i~~vD~~~~~~~~ 62 (64)
T PRK07597 29 RKELVRSTIVVLVFVAFFALFFYLVDLLFSKLIS 62 (64)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888877777788888888877765
No 34
>PF13244 DUF4040: Domain of unknown function (DUF4040)
Probab=28.60 E-value=2.5e+02 Score=22.08 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHhHhhh--cc-CHHHHHHH-HHHH-HHHHHHHHHHHH
Q 019127 216 KSKLQFLTLGIGGVGLVSAYI--SY-SPEIAASF-AAGL-LGSLVYIRMLGS 262 (346)
Q Consensus 216 K~~LLl~Tl~igavg~~~~~l--~y-s~~~AlSy-llGa-~gGllYLrLL~r 262 (346)
.++++..-..+|.+|+..+.+ .+ -++.|+.. ++|+ +..++|+.-|.+
T Consensus 14 ~~~~l~avi~~~~~g~~~al~f~~l~APDVAlTe~~Vg~gl~~~l~~~al~~ 65 (70)
T PF13244_consen 14 SRSRLAAVIALGVFGFLIALLFVLLGAPDVALTEAAVGTGLTTVLFLLALRK 65 (70)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345555555666555554443 34 48999885 5788 888888877765
No 35
>TIGR00964 secE_bact preprotein translocase, SecE subunit, bacterial. This model represents exclusively the bacterial (and some organellar) SecE protein. SecE is part of the core heterotrimer, SecYEG, of the Sec preprotein translocase system. Other components are the ATPase SecA, a cytosolic chaperone SecB, and an accessory complex of SecDF and YajC.
Probab=27.18 E-value=1e+02 Score=22.98 Aligned_cols=34 Identities=6% Similarity=-0.026 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHhHhhhccCHHHHHHHHHH
Q 019127 216 KSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAG 249 (346)
Q Consensus 216 K~~LLl~Tl~igavg~~~~~l~ys~~~AlSyllG 249 (346)
|+++..+|+.+..+..+.+.+++..+..+++++.
T Consensus 20 ~~e~~~~t~~Vi~~~~~~~~~~~~~D~~~~~~~~ 53 (55)
T TIGR00964 20 RKELITYTIVVIVFVIFFSLFLFGVDYVFGKLIS 53 (55)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888888877777777777788877777653
No 36
>COG3808 OVP1 Inorganic pyrophosphatase [Energy production and conversion]
Probab=26.85 E-value=99 Score=33.92 Aligned_cols=39 Identities=18% Similarity=0.052 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHhHhhhccCHHHHHHHHHHHHHHH
Q 019127 216 KSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSL 254 (346)
Q Consensus 216 K~~LLl~Tl~igavg~~~~~l~ys~~~AlSyllGa~gGl 254 (346)
.|+-.....+...+.++.+|+..+.++|+.|++|++.|-
T Consensus 53 ~rqy~tiavv~ivva~ll~~~l~~~~ta~~Fl~GAv~S~ 91 (703)
T COG3808 53 ARQYKTIAVVGIVVAILLAWFLLSWLTAIGFLLGAVLSA 91 (703)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 343333333333556667777788999999999998664
No 37
>COG0344 Predicted membrane protein [Function unknown]
Probab=26.42 E-value=69 Score=30.39 Aligned_cols=32 Identities=19% Similarity=0.452 Sum_probs=26.4
Q ss_pred HHHHHHHHHH-HHHHHHHHHH-Hhhhhhcccccc
Q 019127 242 IAASFAAGLL-GSLVYIRMLG-STVDSMAAGAKG 273 (346)
Q Consensus 242 ~AlSyllGa~-gGllYLrLL~-rsVD~Lg~g~~g 273 (346)
.+++|++|++ .|+++.|++. .++...|+++.|
T Consensus 9 l~~~YLlGSIp~g~ii~k~~~~~D~R~~GSgN~G 42 (200)
T COG0344 9 LLIAYLLGSIPFGLIISKIFGGIDVRKIGSGNPG 42 (200)
T ss_pred HHHHHHhcchhHHHHHHHHhCCCCccccCCCCCC
Confidence 3566999987 6899999998 999999987654
No 38
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=26.00 E-value=5.5e+02 Score=24.92 Aligned_cols=28 Identities=11% Similarity=0.084 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 019127 208 SKEQYFKLKSKLQFLTLGIGGVGLVSAY 235 (346)
Q Consensus 208 sm~EY~~LK~~LLl~Tl~igavg~~~~~ 235 (346)
-|.||.+|-+-+++.+..+..++....+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (400)
T PRK11646 3 RVSQARNLGKYFLLIDNMLVVLGFFVVF 30 (400)
T ss_pred CCcccccccHHHHHHHHHHHHHHHHHHH
Confidence 3678999988888877766666554433
No 39
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=25.79 E-value=1e+02 Score=26.19 Aligned_cols=14 Identities=21% Similarity=0.138 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 019127 243 AASFAAGLLGSLVY 256 (346)
Q Consensus 243 AlSyllGa~gGllY 256 (346)
.+|+.+|++.|++|
T Consensus 38 lIs~viGilLG~~~ 51 (93)
T PF06946_consen 38 LISVVIGILLGAAA 51 (93)
T ss_pred HHHHHHHHHHHHHh
Confidence 44555555555544
No 40
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=25.58 E-value=2e+02 Score=22.98 Aligned_cols=38 Identities=26% Similarity=0.336 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHH-HHhHhhhccCHHH-HHHHHHHHHHHH
Q 019127 217 SKLQFLTLGIGGV-GLVSAYISYSPEI-AASFAAGLLGSL 254 (346)
Q Consensus 217 ~~LLl~Tl~igav-g~~~~~l~ys~~~-AlSyllGa~gGl 254 (346)
++++...+.++++ ++++-|+..+... -..|++|.+..+
T Consensus 10 e~l~~~il~~~~iisfi~Gy~~q~~~~~~~~~~~g~~~~~ 49 (76)
T PF06645_consen 10 EKLMQYILIISAIISFIVGYITQSFSYTFYIYGAGVVLTL 49 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433 4455566656433 344555555444
No 41
>COG4818 Predicted membrane protein [Function unknown]
Probab=24.87 E-value=69 Score=27.71 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019127 240 PEIAASFAAGLLGSLVYIRM 259 (346)
Q Consensus 240 ~~~AlSyllGa~gGllYLrL 259 (346)
.+-|+||++|-+.|+++|.|
T Consensus 5 iegaLCY~lgwitGllFlll 24 (105)
T COG4818 5 IEGALCYLLGWITGLLFLLL 24 (105)
T ss_pred hhhHHHHHHHHHHHHHHHHh
Confidence 46799999999999999865
No 42
>PF10864 DUF2663: Protein of unknown function (DUF2663); InterPro: IPR020210 This entry represents a group of uncharacterised transmembrane proteins.
Probab=23.45 E-value=4.4e+02 Score=23.62 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHH
Q 019127 208 SKEQYFKLKSKLQFL 222 (346)
Q Consensus 208 sm~EY~~LK~~LLl~ 222 (346)
-.++|++|+.+.+..
T Consensus 9 rK~K~e~l~k~~~~~ 23 (130)
T PF10864_consen 9 RKEKWERLKKQHLFW 23 (130)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456777777766554
No 43
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=23.42 E-value=2.5e+02 Score=29.42 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=14.1
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHH
Q 019127 237 SYSPEIAASFAAGLLGSLVYIRM 259 (346)
Q Consensus 237 ~ys~~~AlSyllGa~gGllYLrL 259 (346)
+++...-.+++.+++.|+...++
T Consensus 153 ~~~~~~~~~~l~aillg~~~~~~ 175 (485)
T PLN03199 153 FYSDRFAMHIASALLLGLFFQQC 175 (485)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHH
Confidence 33445555666777777776664
No 44
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=23.28 E-value=2.3e+02 Score=27.46 Aligned_cols=64 Identities=23% Similarity=0.189 Sum_probs=38.2
Q ss_pred hhhcccCCCCChHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHhHhhhccC--HHHHHHHHHHHHHHH
Q 019127 190 MFRELRKPRGDPEVLAAQSKEQY--FKLKSKLQFLTLGIGGVGLVSAYISYS--PEIAASFAAGLLGSL 254 (346)
Q Consensus 190 ~~~e~~~~~~dp~~~aaesm~EY--~~LK~~LLl~Tl~igavg~~~~~l~ys--~~~AlSyllGa~gGl 254 (346)
+.+.+...+.|.|..++ .+++= ..++..-.+..++.+.+|...+.++.| .+...+|..|.++++
T Consensus 95 i~~~v~~~~~~~e~a~~-~l~~i~~~~~~y~~~l~~~~~g~~~~~f~~l~gG~w~d~~iaf~~~~~~~~ 162 (250)
T COG2966 95 ISRAVEHGRLDLEEAHK-KLDEIQKQPLRYSRWLVLLMAGLAAAAFALLFGGGWLDFLIAFFAGLLGFL 162 (250)
T ss_pred HHHHHHcCCCCHHHHHH-HHHHhhhCccccccHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 45566666777765322 22222 444566667788888888888888874 344445555554443
No 45
>PRK09917 hypothetical protein; Provisional
Probab=23.17 E-value=2.7e+02 Score=25.10 Aligned_cols=91 Identities=19% Similarity=0.246 Sum_probs=45.3
Q ss_pred HHHHHHHHHhHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCCchHHHHHHHHHHHHhhcccc
Q 019127 223 TLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAGAKGLMKGAVGQPRLLVPVVLVMIYNRWNEITV 302 (346)
Q Consensus 223 Tl~igavg~~~~~l~ys~~~AlSyllGa~gGllYLrLL~rsVD~Lg~g~~g~~kgalgqpRLLVPV~Lvv~a~rwn~i~~ 302 (346)
...++++||...+=.-....-.+-+.|++|=.+|+.++.-.++..-.. .++ -+.+= ++....+||.. .
T Consensus 16 ~a~ia~~gFailfn~P~r~l~~~~i~G~vgw~vy~~~~~~~~~~~~as-------fia--a~~ig-l~s~~~Ar~~k--~ 83 (157)
T PRK09917 16 LAAIPAVGFAMVFNVPVRALRWCALLGAIGHGSRMLMMTSGLNIEWST-------FMA--SMLVG-TIGIQWSRWYL--A 83 (157)
T ss_pred HHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH-------HHH--HHHHH-HHHHHHHHHhC--C
Confidence 344445555544444445566677788888899996653223222100 000 01111 22333446543 2
Q ss_pred CCccccchhHHHHHHHHHHHHHH
Q 019127 303 PEYGFLHLELIPMLVGFFTYKIA 325 (346)
Q Consensus 303 p~~g~~~LeLlP~llGFLTYK~A 325 (346)
|---+.=--++|++=|...|+.-
T Consensus 84 P~tvf~ip~iiPLVPG~~~Y~~m 106 (157)
T PRK09917 84 HPKVFTVAAVIPMFPGISAYTAM 106 (157)
T ss_pred CCEEeeHhhHHhcCCCHHHHHHH
Confidence 32111114577877788888854
No 46
>PF14476 Chloroplast_duf: Petal formation-expressed
Probab=22.10 E-value=2.9e+02 Score=28.02 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=20.5
Q ss_pred CCChHHHHHHhHHHHHHHHHHHHHHHH
Q 019127 198 RGDPEVLAAQSKEQYFKLKSKLQFLTL 224 (346)
Q Consensus 198 ~~dp~~~aaesm~EY~~LK~~LLl~Tl 224 (346)
|+=-++.+...++||.+|-+-.|...=
T Consensus 182 ReVv~VlK~KD~edY~rlg~l~LkiNK 208 (313)
T PF14476_consen 182 REVVEVLKRKDEEDYLRLGNLALKINK 208 (313)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhh
Confidence 345567888999999999887776643
No 47
>PLN02975 complex I subunit
Probab=21.95 E-value=1.4e+02 Score=25.50 Aligned_cols=42 Identities=24% Similarity=0.470 Sum_probs=27.0
Q ss_pred HHHHHHHHhHhhhcc------CHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019127 224 LGIGGVGLVSAYISY------SPEIAASFAAGLLGSLVYIRMLGSTVDSM 267 (346)
Q Consensus 224 l~igavg~~~~~l~y------s~~~AlSyllGa~gGllYLrLL~rsVD~L 267 (346)
++++++++...|++. .+-.-++-+||.+||++|.. ++|-.++
T Consensus 35 a~~ta~s~~~~~~~~~~~~~~~~~mr~ag~iG~~gGf~~aY--q~S~~Rf 82 (97)
T PLN02975 35 ATITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAY--QNSAGRL 82 (97)
T ss_pred HHHHHHHHHHHHHHccCccccchHHHHHHHHHHhhhHHhhh--cccchhh
Confidence 344555555555543 56777888899999998853 4444444
No 48
>PF15110 TMEM141: TMEM141 protein family; PDB: 2LOR_A.
Probab=21.84 E-value=2.6e+02 Score=23.91 Aligned_cols=57 Identities=14% Similarity=0.077 Sum_probs=40.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhHhhhc-----------cCHHHHHHHHHHHHHHHHHHHHHH
Q 019127 205 AAQSKEQYFKLKSKLQFLTLGIGGVGLVSAYIS-----------YSPEIAASFAAGLLGSLVYIRMLG 261 (346)
Q Consensus 205 aaesm~EY~~LK~~LLl~Tl~igavg~~~~~l~-----------ys~~~AlSyllGa~gGllYLrLL~ 261 (346)
+--+.+||.+=+.+-+...+.--.+|++.+|+. .-.+.-+|.++|.++|+.=-|.=.
T Consensus 13 khPG~~~Ya~CqS~Af~kG~~tFv~G~~~~f~~Q~~iqrrlpYp~q~~~LVS~v~~sv~sY~vT~~et 80 (94)
T PF15110_consen 13 KHPGLQEYAACQSRAFMKGLFTFVLGTGATFFLQKAIQRRLPYPFQWNILVSVVVASVASYQVTRVET 80 (94)
T ss_dssp HS-SHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHTTSSSSS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCCCCCCchhHHHHHHhhhhhhhhhhHHH
Confidence 345889999988887777665555566666654 357888899999999887555433
No 49
>KOG2890 consensus Predicted membrane protein [Function unknown]
Probab=21.66 E-value=66 Score=32.69 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=23.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019127 238 YSPEIAASFAAGLLGSLVYIRMLGSTVD 265 (346)
Q Consensus 238 ys~~~AlSyllGa~gGllYLrLL~rsVD 265 (346)
+....=.++.+|...|+.|||..+++-.
T Consensus 195 ~~f~~l~s~~~g~~~sWtYLRfyq~h~~ 222 (326)
T KOG2890|consen 195 LVFASLPSITFGVLVSWTYLRFYQRHPT 222 (326)
T ss_pred HHhhhhHHHHHhhhhhhhhheecccCCc
Confidence 4445557899999999999999999984
No 50
>COG0690 SecE Preprotein translocase subunit SecE [Intracellular trafficking and secretion]
Probab=21.42 E-value=1.5e+02 Score=23.56 Aligned_cols=46 Identities=13% Similarity=-0.025 Sum_probs=32.3
Q ss_pred HHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHhHhhhccCHHHHHHHH
Q 019127 202 EVLAAQSKEQYFKL----KSKLQFLTLGIGGVGLVSAYISYSPEIAASFA 247 (346)
Q Consensus 202 ~~~aaesm~EY~~L----K~~LLl~Tl~igavg~~~~~l~ys~~~AlSyl 247 (346)
...-.+..+|..+. ++++..+|+.+-.+.++...++|+.+..+..+
T Consensus 21 ~~f~~~~~~E~~KV~WPsrke~~~~t~~Vl~~v~~~s~~~~~~D~l~~~~ 70 (73)
T COG0690 21 FNFFKEVRKELKKVVWPTRKELIRSTLIVLVVVAFFSLFLYGLDQLIGKL 70 (73)
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334555666553 67888888888888888888888877766654
No 51
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=20.98 E-value=1.4e+02 Score=29.19 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=15.7
Q ss_pred cccCCcCccccccCCCCCCCC
Q 019127 35 ILLPKKKSMKWSTGVAPGEYG 55 (346)
Q Consensus 35 ~~~~~~k~~~w~~g~~pg~yg 55 (346)
..+|--++-.|-+|.-||+||
T Consensus 55 ~W~P~~~~P~~LdG~~PGD~G 75 (250)
T PLN00101 55 EWLPGLASPGYLNGSLPGDNG 75 (250)
T ss_pred ccCCCCCCCcccCCCCCCccC
Confidence 456766666778888888887
Done!