BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019128
(346 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RC3|A Chain A, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|B Chain B, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|C Chain C, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|D Chain D, Crystal Structure Of Cbs Domain, Ne2398
Length = 135
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 40/64 (62%)
Query: 15 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAI 74
+++T V ++MTR +V + + + + + + RHLPV+++G+VI LL I + DAI
Sbjct: 71 VKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAI 130
Query: 75 ARME 78
++ +
Sbjct: 131 SQHQ 134
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 15/119 (12%)
Query: 117 FRPSLSTI---IPEKSK-VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDI 172
F+ + T+ + EK VV I P D+V A +KM + + +V + K GILT +D
Sbjct: 1 FQGHMKTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDF 60
Query: 173 LMRVISQNLPADSTLVEKVMT----------PNPECATIDTPI-VDALHIMHDGKFLHL 220
+ + P T V+++MT N +C + T + V L ++ DGK + L
Sbjct: 61 SRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGL 119
>pdb|4FRY|A Chain A, The Structure Of A Putative Signal-Transduction Protein
With Cbs Domains From Burkholderia Ambifaria Mc40-6
pdb|4FRY|B Chain B, The Structure Of A Putative Signal-Transduction Protein
With Cbs Domains From Burkholderia Ambifaria Mc40-6
Length = 157
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 2 KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVI 61
+D A +V+ +E + + T V ++MT +V E + M + + RHLPV++ G++I
Sbjct: 62 RDYARKVVLQERSSKATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLDGGKLI 121
Query: 62 ALLDIAKCLYDAIA 75
L+ I + IA
Sbjct: 122 GLISIGDLVKSVIA 135
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%)
Query: 131 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 190
+ T++ D V A K M E + + +V + GI+T +D +V+ Q + +T VE+
Sbjct: 23 IYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYARKVVLQERSSKATRVEE 82
Query: 191 VMTPNPECATIDTPIVDALHIMHDGKFLHLP 221
+MT + + +M + + HLP
Sbjct: 83 IMTAKVRYVEPSQSTDECMALMTEHRMRHLP 113
>pdb|3FHM|A Chain A, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|B Chain B, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|C Chain C, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|D Chain D, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
Length = 165
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 17 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIAR 76
+ VS MT+N ++ + ++ M G+FRH+PV ENG + ++ I + I
Sbjct: 92 QQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEENGRLAGIISIGDVVKARIGE 151
Query: 77 ME 78
+E
Sbjct: 152 IE 153
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 113 RERMFRPSLSTIIPE-----KSKVVTISPTDTVLMATKKMLELRLSSAVVT-VENKPRGI 166
RE ++ ++T + + VVT+ P ++ A + ++ + VVT + GI
Sbjct: 14 RENLYFQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGI 73
Query: 167 LTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLP 221
T +D++ V Q + V MT N ++ + IM G+F H+P
Sbjct: 74 FTERDLVKAVAGQGAASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVP 128
>pdb|3GHD|A Chain A, Crystal Structure Of A Cystathionine Beta-Synthase Domain
Protein Fused To A Zn-Ribbon-Like Domain
pdb|3GHD|B Chain B, Crystal Structure Of A Cystathionine Beta-Synthase Domain
Protein Fused To A Zn-Ribbon-Like Domain
Length = 70
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 189
K + + P DTV K + + SAVV ++ G++T +DIL +V+++ VE
Sbjct: 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVXEGDEILGVVTERDILDKVVAKGKNPKEVKVE 60
Query: 190 KVMTPNP 196
++ T NP
Sbjct: 61 EIXTKNP 67
>pdb|2YZI|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
pdb|2YZI|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
Length = 138
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTLV 188
K++ + P+ +V A++ E + S VV ++ G T DI+ RVI LP D V
Sbjct: 16 KLLGVKPSTSVQEASRLXXEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIP-V 74
Query: 189 EKVMTPNPECATIDTPIVDALHIMHDGKFLHL 220
E++ T N A ++TP+ + L + + H+
Sbjct: 75 ERIXTRNLITANVNTPLGEVLRKXAEHRIKHI 106
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 3 DIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIA 62
DI RVI L + PV ++ TRN +T E L+K + + +H+ + E G+++
Sbjct: 58 DIIRRVIVPGLPYD-IPVERIXTRNLITANVNTPLGEVLRKXAEHRIKHILIEEEGKIVG 116
Query: 63 LLDIAKCLYDAIARME 78
+ ++ L + R+E
Sbjct: 117 IFTLSDLLEASRRRLE 132
>pdb|2EF7|A Chain A, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
pdb|2EF7|B Chain B, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
Length = 133
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 128 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 187
K++V++++ + K E + S +V NKP GI+T +DI ++ I + + T
Sbjct: 11 KTQVISVTKDAKLNDIAKVXTEKNIGSVIVVDGNKPVGIITERDI-VKAIGKGKSLE-TK 68
Query: 188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLP 221
E+ T + D+PI AL + HLP
Sbjct: 69 AEEFXTASLITIREDSPITGALALXRQFNIRHLP 102
>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CU0|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 16/95 (16%)
Query: 131 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 190
V+TI+P +TV A M + + V + K GI+T KDI R + LV++
Sbjct: 103 VITIAPDETVDFALFLMEKHGIDGLPVVEDEKVVGIITKKDIAAR--------EGKLVKE 154
Query: 191 VMTPN----PECATIDTPIVDALHIMHDGKFLHLP 221
+MT PE ++ +AL IM + + LP
Sbjct: 155 LMTKEVITVPESIEVE----EALKIMIENRIDRLP 185
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 13/76 (17%)
Query: 2 KDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEV 60
KDIA R E V ++MT+ V EAL+ M++ + LPVV E G++
Sbjct: 142 KDIAAR--------EGKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKL 193
Query: 61 IALLDIAKCLYDAIAR 76
+ L+ + D +AR
Sbjct: 194 VGLI----TMSDLVAR 205
>pdb|3KPC|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein
Mj0100 In Complex With 5 -Methylthioadenosine And
S-Adenosyl-L- Methionine
Length = 124
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 18 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCL 70
T V ++++ P S+ +EA + +++ HLP+V E+G+++ ++ DIAK L
Sbjct: 3 TLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKAL 59
>pdb|3KPB|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein
Mj0100 In Complex With 5 -Methylthioadenosine And
S-Adenosyl-L- Methionine.
pdb|3KPB|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein
Mj0100 In Complex With 5 -Methylthioadenosine And
S-Adenosyl-L- Methionine.
pdb|3KPB|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein
Mj0100 In Complex With 5 -Methylthioadenosine And
S-Adenosyl-L- Methionine.
pdb|3KPB|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein
Mj0100 In Complex With 5 -Methylthioadenosine And
S-Adenosyl-L- Methionine.
pdb|3KPD|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein
Mj0100 In Complex With 5 -Methylthioadenosine And
S-Adenosyl-L- Methionine.
pdb|3KPD|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein
Mj0100 In Complex With 5 -Methylthioadenosine And
S-Adenosyl-L- Methionine.
pdb|3KPD|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein
Mj0100 In Complex With 5 -Methylthioadenosine And
S-Adenosyl-L- Methionine.
pdb|3KPD|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein
Mj0100 In Complex With 5 -Methylthioadenosine And
S-Adenosyl-L- Methionine
Length = 122
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 18 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCL 70
T V ++++ P S+ +EA + +++ HLP+V E+G+++ ++ DIAK L
Sbjct: 1 TLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKAL 57
>pdb|3ZFH|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine
5'-monophosphate Dehydrogenase
Length = 510
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 11 RELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL 64
R++ ET + R+P V T +E LQ + F PVVE GE++ ++
Sbjct: 105 RKVKKHETAI----VRDPVTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIV 154
>pdb|4AVF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
Length = 490
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 11 RELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL 64
R++ ET + R+P V T +E LQ + F PVVE GE++ ++
Sbjct: 85 RKVKKHETAI----VRDPVTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIV 134
>pdb|2YZQ|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
Length = 282
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 128 KSKVVTISPTDTVLMATKKMLELRLSSAVVT-VENKPRGILTSKDILMRVISQN 180
K V + DT+ A K MLE VV + KP GILT DI+ R +++
Sbjct: 67 KRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKS 120
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 12 ELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALL---DIA 67
EL L PV+++MTR+ E KM + LPV+ G++I L+ D+
Sbjct: 215 ELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLL 274
Query: 68 KCLYDAIA 75
K L + A
Sbjct: 275 KVLVKSKA 282
>pdb|1O50|A Chain A, Crystal Structure Of A Cbs Domain-Containing Protein
(Tm0935) From Thermotoga Maritima At 1.87 A Resolution
Length = 157
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALLD 65
+P +V DT EAL+ M+ + +PVV E GE++ L+
Sbjct: 104 DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLN 143
>pdb|2IY5|B Chain B, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
Complexed With Trna And A Phenylalanyl-Adenylate Analog
Length = 785
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 311 AFAFKVQDNKGLMHR--FTCGMLPFPNFIEVTNY 342
AF +V + M R F GM P N ++VTNY
Sbjct: 218 AFGLRVAPSPLWMQRALFAAGMRPINNVVDVTNY 251
>pdb|1PYS|B Chain B, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
pdb|1B7Y|B Chain B, Phenylalanyl Trna Synthetase Complexed With
Phenylalaninyl-Adenylate
pdb|1EIY|B Chain B, The Crystal Structure Of Phenylalanyl-Trna Synthetase From
Thermus Thermophilus Complexed With Cognate Trnaphe
pdb|1B70|B Chain B, Phenylalanyl Trna Synthetase Complexed With Phenylalanine
pdb|1JJC|B Chain B, Crystal Structure At 2.6a Resolution Of Phenylalanyl-trna
Synthetase Complexed With Phenylalanyl-adenylate In The
Presence Of Manganese
pdb|2AKW|B Chain B, Crystal Structure Of T.thermophilus Phenylalanyl-trna
Synthetase Complexed With P-cl-phenylalanine
pdb|2ALY|B Chain B, Crystal Structure Of T.Thermophilus Phenylalanyl-Trna
Synthetase Complexed With
5'-O-[n-(L-Tyrosyl)sulphamoyl]adenosine
pdb|2AMC|B Chain B, Crystal Structure Of Phenylalanyl-Trna Synthetase
Complexed With L- Tyrosine
pdb|3HFZ|B Chain B, Crystal Structure Of Thermus Thermophilus
Phenylalanyl-Trna Synthetase Comlexed With M-Tyrosine
pdb|3TEH|B Chain B, Crystal Structure Of Thermus Thermophilus
Phenylalanyl-Trna Synthetase Comlexed With L-Dopa
Length = 785
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 311 AFAFKVQDNKGLMHR--FTCGMLPFPNFIEVTNY 342
AF +V + M R F GM P N ++VTNY
Sbjct: 218 AFGLRVAPSPLWMQRALFAAGMRPINNVVDVTNY 251
>pdb|3SL7|A Chain A, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
pdb|3SL7|B Chain B, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
Length = 180
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 20 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALL 64
V + T +P V T +A + +++ KFR LPVV+ +G++I +L
Sbjct: 100 VGDLXTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGIL 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,739,857
Number of Sequences: 62578
Number of extensions: 311849
Number of successful extensions: 667
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 641
Number of HSP's gapped (non-prelim): 42
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)