Query 019128
Match_columns 346
No_of_seqs 499 out of 3564
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 06:55:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019128.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019128hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15094 magnesium/cobalt effl 99.9 2.2E-26 4.7E-31 204.6 13.7 196 116-323 64-273 (292)
2 PRK11573 hypothetical protein; 99.9 5.8E-26 1.3E-30 211.2 14.1 203 116-328 184-401 (413)
3 TIGR03520 GldE gliding motilit 99.9 3.2E-26 6.9E-31 213.1 11.5 194 116-323 188-399 (408)
4 COG4535 CorC Putative Mg2+ and 99.9 8E-25 1.7E-29 179.1 8.8 202 118-331 66-282 (293)
5 COG1253 TlyC Hemolysins and re 99.9 2E-23 4.4E-28 196.1 15.9 200 116-327 203-418 (429)
6 COG4536 CorB Putative Mg2+ and 99.9 5.8E-22 1.3E-26 173.2 9.5 202 117-328 198-413 (423)
7 COG2524 Predicted transcriptio 99.8 5.5E-20 1.2E-24 152.9 12.3 122 117-243 170-291 (294)
8 COG2524 Predicted transcriptio 99.8 8.8E-20 1.9E-24 151.7 11.8 124 12-176 166-290 (294)
9 PRK14869 putative manganese-de 99.8 1.1E-17 2.3E-22 162.9 18.1 216 17-241 67-302 (546)
10 COG3620 Predicted transcriptio 99.7 1.8E-17 3.8E-22 128.0 10.5 122 16-178 63-184 (187)
11 COG3448 CBS-domain-containing 99.7 1.6E-17 3.4E-22 140.9 11.0 131 13-177 240-372 (382)
12 COG3448 CBS-domain-containing 99.7 1.8E-16 3.9E-21 134.5 13.3 131 113-245 239-374 (382)
13 COG3620 Predicted transcriptio 99.7 3.3E-16 7.2E-21 120.9 10.6 120 118-242 64-183 (187)
14 cd04619 CBS_pair_6 The CBS dom 99.7 1.1E-15 2.4E-20 117.5 13.4 110 130-240 2-113 (114)
15 cd04630 CBS_pair_17 The CBS do 99.7 1.3E-15 2.9E-20 117.0 13.4 110 130-240 2-113 (114)
16 cd04603 CBS_pair_KefB_assoc Th 99.7 1.5E-15 3.3E-20 116.2 12.9 108 130-240 2-110 (111)
17 cd04641 CBS_pair_28 The CBS do 99.7 2.1E-15 4.5E-20 117.1 13.6 110 130-240 2-119 (120)
18 TIGR01303 IMP_DH_rel_1 IMP deh 99.7 1.3E-15 2.9E-20 143.4 14.5 149 79-241 53-201 (475)
19 PRK07807 inosine 5-monophospha 99.7 1.3E-15 2.9E-20 143.6 14.3 134 99-241 69-203 (479)
20 cd04618 CBS_pair_5 The CBS dom 99.7 1.4E-15 3E-20 113.7 11.7 93 130-240 2-97 (98)
21 TIGR03520 GldE gliding motilit 99.6 4.1E-15 8.9E-20 138.8 16.1 162 7-213 180-349 (408)
22 PRK15094 magnesium/cobalt effl 99.6 5.9E-15 1.3E-19 131.5 16.1 165 6-212 55-227 (292)
23 COG2905 Predicted signal-trans 99.6 8.6E-15 1.9E-19 134.9 17.2 118 120-241 150-268 (610)
24 PRK10892 D-arabinose 5-phospha 99.6 2E-15 4.3E-20 137.9 13.0 123 117-241 200-323 (326)
25 TIGR00400 mgtE Mg2+ transporte 99.6 9.6E-16 2.1E-20 145.1 11.2 177 8-241 121-304 (449)
26 cd04617 CBS_pair_4 The CBS dom 99.6 3.9E-15 8.5E-20 115.2 12.6 110 130-240 2-117 (118)
27 cd04593 CBS_pair_EriC_assoc_ba 99.6 4.4E-15 9.6E-20 114.2 12.8 110 130-240 2-114 (115)
28 cd04608 CBS_pair_PALP_assoc Th 99.6 1.6E-15 3.5E-20 118.5 10.1 111 130-241 3-123 (124)
29 cd04587 CBS_pair_CAP-ED_DUF294 99.6 7.1E-15 1.5E-19 112.6 13.2 111 130-240 2-112 (113)
30 cd04623 CBS_pair_10 The CBS do 99.6 7.8E-15 1.7E-19 112.2 13.1 110 130-240 2-112 (113)
31 cd04600 CBS_pair_HPP_assoc Thi 99.6 6.9E-15 1.5E-19 114.7 12.7 111 129-240 2-123 (124)
32 cd04607 CBS_pair_NTP_transfera 99.6 1E-14 2.2E-19 111.9 13.3 109 130-240 3-112 (113)
33 KOG1764 5'-AMP-activated prote 99.6 1.9E-14 4E-19 132.2 17.2 189 27-247 163-363 (381)
34 cd04620 CBS_pair_7 The CBS dom 99.6 1.1E-14 2.3E-19 112.1 13.1 110 130-240 2-114 (115)
35 PRK11543 gutQ D-arabinose 5-ph 99.6 5.8E-15 1.3E-19 134.6 13.4 122 118-241 196-318 (321)
36 cd04622 CBS_pair_9 The CBS dom 99.6 1.5E-14 3.3E-19 110.7 13.7 111 130-240 2-112 (113)
37 cd04611 CBS_pair_PAS_GGDEF_DUF 99.6 2.1E-14 4.6E-19 109.5 14.1 109 130-240 2-110 (111)
38 cd04642 CBS_pair_29 The CBS do 99.6 1.3E-14 2.9E-19 113.5 12.7 110 130-240 2-125 (126)
39 cd04613 CBS_pair_SpoIVFB_EriC_ 99.6 1.2E-14 2.7E-19 111.3 12.1 110 130-240 2-113 (114)
40 COG4109 Predicted transcriptio 99.6 1.2E-14 2.7E-19 126.3 13.2 117 119-242 188-305 (432)
41 cd04631 CBS_pair_18 The CBS do 99.6 1.4E-14 3E-19 113.1 12.4 110 130-240 2-124 (125)
42 cd04588 CBS_pair_CAP-ED_DUF294 99.6 3E-14 6.5E-19 108.6 14.0 108 130-240 2-109 (110)
43 cd04615 CBS_pair_2 The CBS dom 99.6 1.7E-14 3.7E-19 110.5 12.6 109 131-240 3-112 (113)
44 cd04605 CBS_pair_MET2_assoc Th 99.6 2.8E-14 6E-19 108.8 13.6 106 130-240 3-109 (110)
45 cd04639 CBS_pair_26 The CBS do 99.6 1.6E-14 3.4E-19 110.3 12.2 108 130-240 2-110 (111)
46 cd04624 CBS_pair_11 The CBS do 99.6 2.4E-14 5.2E-19 109.5 13.0 109 130-240 2-111 (112)
47 cd04618 CBS_pair_5 The CBS dom 99.6 1.7E-14 3.7E-19 107.8 11.8 91 27-173 2-96 (98)
48 cd04627 CBS_pair_14 The CBS do 99.6 2.8E-14 6.1E-19 111.2 12.9 109 130-239 2-121 (123)
49 cd04643 CBS_pair_30 The CBS do 99.6 1.9E-14 4.2E-19 110.7 11.7 108 130-240 2-115 (116)
50 cd04590 CBS_pair_CorC_HlyC_ass 99.6 3.2E-14 6.8E-19 108.6 12.8 107 130-240 2-110 (111)
51 cd04800 CBS_pair_CAP-ED_DUF294 99.6 4.3E-14 9.3E-19 107.9 13.5 109 130-240 2-110 (111)
52 cd04803 CBS_pair_15 The CBS do 99.6 2.8E-14 6E-19 110.9 12.3 110 130-240 2-121 (122)
53 cd04621 CBS_pair_8 The CBS dom 99.6 2.6E-14 5.7E-19 113.4 12.2 109 130-240 2-134 (135)
54 cd04589 CBS_pair_CAP-ED_DUF294 99.6 5E-14 1.1E-18 107.6 13.2 109 130-240 2-110 (111)
55 cd04595 CBS_pair_DHH_polyA_Pol 99.6 5.7E-14 1.2E-18 107.1 13.5 107 130-240 3-109 (110)
56 cd04801 CBS_pair_M50_like This 99.6 2.3E-14 4.9E-19 110.1 11.3 108 130-240 2-113 (114)
57 cd04625 CBS_pair_12 The CBS do 99.6 5.5E-14 1.2E-18 107.5 13.4 110 130-240 2-111 (112)
58 cd04604 CBS_pair_KpsF_GutQ_ass 99.6 4.3E-14 9.3E-19 108.3 12.8 110 130-240 3-113 (114)
59 cd04802 CBS_pair_3 The CBS dom 99.6 7.2E-14 1.6E-18 106.8 13.9 110 130-240 2-111 (112)
60 cd04626 CBS_pair_13 The CBS do 99.6 3.8E-14 8.3E-19 108.2 12.2 108 130-240 2-110 (111)
61 cd04614 CBS_pair_1 The CBS dom 99.6 2.8E-14 6E-19 106.2 11.1 93 130-240 2-95 (96)
62 cd04583 CBS_pair_ABC_OpuCA_ass 99.6 6.3E-14 1.4E-18 106.5 13.1 105 130-240 3-108 (109)
63 cd04582 CBS_pair_ABC_OpuCA_ass 99.6 5E-14 1.1E-18 106.6 12.4 103 130-240 2-105 (106)
64 cd04596 CBS_pair_DRTGG_assoc T 99.6 4.4E-14 9.5E-19 107.4 12.0 104 130-240 3-107 (108)
65 cd04636 CBS_pair_23 The CBS do 99.6 3.4E-14 7.5E-19 112.2 11.9 109 130-240 2-131 (132)
66 PTZ00314 inosine-5'-monophosph 99.6 3.6E-14 7.7E-19 134.9 13.7 135 99-241 75-216 (495)
67 PRK10892 D-arabinose 5-phospha 99.6 2.9E-14 6.4E-19 130.1 12.7 119 16-173 200-321 (326)
68 KOG1764 5'-AMP-activated prote 99.6 1.8E-13 3.8E-18 125.8 17.7 263 26-343 76-361 (381)
69 cd04612 CBS_pair_SpoIVFB_EriC_ 99.6 8.4E-14 1.8E-18 106.2 13.2 109 130-240 2-110 (111)
70 cd04640 CBS_pair_27 The CBS do 99.6 4.9E-14 1.1E-18 110.4 12.1 111 130-240 2-125 (126)
71 TIGR01302 IMP_dehydrog inosine 99.6 4.5E-14 9.7E-19 133.5 14.0 115 120-242 81-200 (450)
72 cd04629 CBS_pair_16 The CBS do 99.6 3.5E-14 7.6E-19 108.9 11.0 110 130-240 2-113 (114)
73 PRK07807 inosine 5-monophospha 99.6 8.1E-14 1.8E-18 131.5 15.3 160 15-225 86-247 (479)
74 cd04609 CBS_pair_PALP_assoc2 T 99.6 7.3E-14 1.6E-18 106.2 12.4 108 130-240 2-109 (110)
75 PRK05567 inosine 5'-monophosph 99.6 9.7E-14 2.1E-18 132.6 15.8 172 19-241 88-265 (486)
76 cd04603 CBS_pair_KefB_assoc Th 99.6 6.5E-14 1.4E-18 107.1 11.9 106 27-173 2-109 (111)
77 cd04585 CBS_pair_ACT_assoc2 Th 99.6 1.1E-13 2.5E-18 107.2 13.4 110 130-240 2-121 (122)
78 cd04635 CBS_pair_22 The CBS do 99.6 4.9E-14 1.1E-18 109.5 11.2 111 130-240 2-121 (122)
79 cd04586 CBS_pair_BON_assoc Thi 99.6 4E-14 8.7E-19 112.2 10.8 109 130-240 3-134 (135)
80 cd04632 CBS_pair_19 The CBS do 99.5 7.9E-14 1.7E-18 109.4 12.2 110 130-240 2-127 (128)
81 cd04633 CBS_pair_20 The CBS do 99.5 9.6E-14 2.1E-18 107.7 11.9 109 130-240 2-120 (121)
82 cd04637 CBS_pair_24 The CBS do 99.5 1E-13 2.2E-18 107.8 11.6 110 130-240 2-121 (122)
83 cd04610 CBS_pair_ParBc_assoc T 99.5 2.3E-13 5E-18 103.1 13.0 104 130-240 3-106 (107)
84 cd04599 CBS_pair_GGDEF_assoc2 99.5 2.2E-13 4.7E-18 102.8 12.8 103 130-240 2-104 (105)
85 PRK07107 inosine 5-monophospha 99.5 1.4E-13 3E-18 130.7 14.3 107 130-241 106-218 (502)
86 cd04619 CBS_pair_6 The CBS dom 99.5 1.7E-13 3.6E-18 105.3 12.2 109 27-173 2-112 (114)
87 PRK11543 gutQ D-arabinose 5-ph 99.5 6.4E-14 1.4E-18 127.7 11.4 117 17-173 196-316 (321)
88 cd04602 CBS_pair_IMPDH_2 This 99.5 2.5E-13 5.4E-18 104.3 12.7 105 130-240 3-113 (114)
89 cd04614 CBS_pair_1 The CBS dom 99.5 2E-13 4.3E-18 101.5 11.7 91 27-173 2-94 (96)
90 PRK01862 putative voltage-gate 99.5 1.5E-13 3.4E-18 134.5 14.2 125 115-242 443-570 (574)
91 cd04601 CBS_pair_IMPDH This cd 99.5 2.5E-13 5.3E-18 103.4 12.0 105 130-240 3-109 (110)
92 cd04801 CBS_pair_M50_like This 99.5 2.4E-13 5.1E-18 104.4 11.9 109 26-173 1-112 (114)
93 cd04641 CBS_pair_28 The CBS do 99.5 1.3E-13 2.9E-18 106.8 10.3 116 26-173 1-118 (120)
94 TIGR01303 IMP_DH_rel_1 IMP deh 99.5 8.4E-13 1.8E-17 124.6 17.6 115 15-174 85-200 (475)
95 COG0517 FOG: CBS domain [Gener 99.5 5.3E-13 1.2E-17 102.7 13.4 109 129-239 7-117 (117)
96 cd04617 CBS_pair_4 The CBS dom 99.5 3.1E-13 6.7E-18 104.5 11.8 110 27-173 2-116 (118)
97 cd02205 CBS_pair The CBS domai 99.5 6.6E-13 1.4E-17 100.9 13.1 110 130-240 2-112 (113)
98 PRK05567 inosine 5'-monophosph 99.5 3.3E-13 7.1E-18 128.9 13.9 115 120-242 88-204 (486)
99 cd04606 CBS_pair_Mg_transporte 99.5 3.6E-13 7.9E-18 102.5 11.5 101 134-241 2-108 (109)
100 cd04594 CBS_pair_EriC_assoc_ar 99.5 5.1E-13 1.1E-17 100.8 12.2 100 132-240 4-103 (104)
101 PLN02274 inosine-5'-monophosph 99.5 4.2E-13 9.1E-18 127.7 14.1 108 129-242 108-221 (505)
102 COG2905 Predicted signal-trans 99.5 1.3E-13 2.8E-18 127.3 10.0 126 13-178 144-270 (610)
103 cd04630 CBS_pair_17 The CBS do 99.5 7.1E-13 1.5E-17 101.7 12.6 109 27-173 2-112 (114)
104 cd04599 CBS_pair_GGDEF_assoc2 99.5 8.5E-13 1.8E-17 99.5 12.7 102 27-173 2-103 (105)
105 TIGR00400 mgtE Mg2+ transporte 99.5 6.8E-13 1.5E-17 125.8 14.1 119 117-244 129-253 (449)
106 cd04595 CBS_pair_DHH_polyA_Pol 99.5 1.5E-12 3.3E-17 99.1 13.6 107 26-173 2-108 (110)
107 cd04623 CBS_pair_10 The CBS do 99.5 1.1E-12 2.4E-17 100.2 12.6 109 27-173 2-111 (113)
108 cd04584 CBS_pair_ACT_assoc Thi 99.5 6.4E-13 1.4E-17 103.0 11.3 109 130-240 2-120 (121)
109 cd04634 CBS_pair_21 The CBS do 99.5 1E-12 2.2E-17 105.3 12.7 109 130-240 2-142 (143)
110 cd04607 CBS_pair_NTP_transfera 99.5 9.6E-13 2.1E-17 100.8 11.9 107 27-173 3-111 (113)
111 cd04582 CBS_pair_ABC_OpuCA_ass 99.5 1.5E-12 3.2E-17 98.4 12.7 101 27-173 2-104 (106)
112 cd04626 CBS_pair_13 The CBS do 99.5 1.4E-12 2.9E-17 99.6 12.6 107 27-173 2-109 (111)
113 TIGR00393 kpsF KpsF/GutQ famil 99.5 5E-13 1.1E-17 118.7 11.7 112 119-234 155-268 (268)
114 cd04591 CBS_pair_EriC_assoc_eu 99.5 1.1E-12 2.4E-17 99.3 11.6 98 130-240 3-104 (105)
115 cd04629 CBS_pair_16 The CBS do 99.5 1.4E-12 2.9E-17 100.0 12.3 110 27-173 2-112 (114)
116 cd04621 CBS_pair_8 The CBS dom 99.5 1.5E-12 3.3E-17 103.2 12.6 131 27-173 2-133 (135)
117 cd04600 CBS_pair_HPP_assoc Thi 99.4 1.5E-12 3.3E-17 101.4 12.4 119 26-173 2-122 (124)
118 cd04625 CBS_pair_12 The CBS do 99.4 2.8E-12 6E-17 98.0 13.2 109 27-173 2-110 (112)
119 cd04627 CBS_pair_14 The CBS do 99.4 2.3E-12 5E-17 100.3 13.0 116 27-172 2-120 (123)
120 PRK07107 inosine 5-monophospha 99.4 8.3E-13 1.8E-17 125.5 12.2 115 19-174 95-217 (502)
121 cd04596 CBS_pair_DRTGG_assoc T 99.4 1.6E-12 3.5E-17 98.7 11.5 103 26-173 2-106 (108)
122 cd04639 CBS_pair_26 The CBS do 99.4 1.7E-12 3.8E-17 98.9 11.8 106 27-173 2-109 (111)
123 cd04586 CBS_pair_BON_assoc Thi 99.4 1.4E-12 3E-17 103.3 11.6 131 26-173 2-133 (135)
124 cd04800 CBS_pair_CAP-ED_DUF294 99.4 2.7E-12 5.8E-17 97.9 12.7 109 26-173 1-109 (111)
125 cd04593 CBS_pair_EriC_assoc_ba 99.4 2.6E-12 5.7E-17 98.7 12.5 108 27-173 2-113 (115)
126 cd04633 CBS_pair_20 The CBS do 99.4 3E-12 6.5E-17 99.2 12.9 119 26-173 1-119 (121)
127 PRK01862 putative voltage-gate 99.4 1E-12 2.2E-17 128.7 12.5 123 14-175 443-569 (574)
128 cd04588 CBS_pair_CAP-ED_DUF294 99.4 3.9E-12 8.4E-17 96.8 13.1 107 26-173 1-108 (110)
129 cd04605 CBS_pair_MET2_assoc Th 99.4 4.5E-12 9.7E-17 96.5 13.3 105 26-173 2-108 (110)
130 cd04802 CBS_pair_3 The CBS dom 99.4 4.3E-12 9.2E-17 96.9 13.1 109 27-173 2-110 (112)
131 cd04615 CBS_pair_2 The CBS dom 99.4 4.6E-12 1E-16 96.9 13.3 108 27-173 2-111 (113)
132 TIGR01137 cysta_beta cystathio 99.4 2.5E-12 5.4E-17 122.8 14.3 122 114-241 330-452 (454)
133 cd04594 CBS_pair_EriC_assoc_ar 99.4 4.2E-12 9.1E-17 95.8 12.8 99 29-173 4-102 (104)
134 cd04583 CBS_pair_ABC_OpuCA_ass 99.4 4.7E-12 1E-16 96.1 13.1 104 26-173 2-107 (109)
135 cd04589 CBS_pair_CAP-ED_DUF294 99.4 4.4E-12 9.6E-17 96.7 12.9 108 27-173 2-109 (111)
136 cd04624 CBS_pair_11 The CBS do 99.4 3.8E-12 8.3E-17 97.2 12.5 107 27-173 2-110 (112)
137 cd04611 CBS_pair_PAS_GGDEF_DUF 99.4 4.9E-12 1.1E-16 96.3 13.0 107 27-173 2-109 (111)
138 PRK11573 hypothetical protein; 99.4 3.4E-12 7.4E-17 119.2 14.2 133 7-179 176-313 (413)
139 cd04636 CBS_pair_23 The CBS do 99.4 4E-12 8.6E-17 100.3 12.3 128 27-173 2-130 (132)
140 cd04598 CBS_pair_GGDEF_assoc T 99.4 3.9E-12 8.4E-17 98.3 12.0 110 130-240 2-118 (119)
141 cd04608 CBS_pair_PALP_assoc Th 99.4 1.1E-12 2.4E-17 102.4 9.0 109 26-173 2-121 (124)
142 cd04590 CBS_pair_CorC_HlyC_ass 99.4 4.8E-12 1E-16 96.5 12.3 105 27-173 2-109 (111)
143 cd04631 CBS_pair_18 The CBS do 99.4 4.5E-12 9.8E-17 98.8 12.4 120 26-173 1-123 (125)
144 cd04613 CBS_pair_SpoIVFB_EriC_ 99.4 3.5E-12 7.6E-17 97.5 11.6 108 27-173 2-112 (114)
145 cd04643 CBS_pair_30 The CBS do 99.4 4.4E-12 9.6E-17 97.4 12.1 111 27-173 2-114 (116)
146 PLN02274 inosine-5'-monophosph 99.4 1.5E-11 3.2E-16 117.2 18.0 113 22-177 104-221 (505)
147 cd04642 CBS_pair_29 The CBS do 99.4 3.7E-12 8.1E-17 99.6 11.5 121 27-173 2-124 (126)
148 COG4109 Predicted transcriptio 99.4 2.4E-12 5.1E-17 112.3 11.0 114 18-176 188-305 (432)
149 cd04612 CBS_pair_SpoIVFB_EriC_ 99.4 6.9E-12 1.5E-16 95.5 12.6 108 26-173 1-109 (111)
150 cd04587 CBS_pair_CAP-ED_DUF294 99.4 4.6E-12 1E-16 96.8 11.6 109 27-173 2-111 (113)
151 cd04638 CBS_pair_25 The CBS do 99.4 7.3E-12 1.6E-16 94.7 12.4 103 130-240 2-105 (106)
152 cd04585 CBS_pair_ACT_assoc2 Th 99.4 6.2E-12 1.4E-16 97.3 12.3 119 26-173 1-120 (122)
153 cd04803 CBS_pair_15 The CBS do 99.4 5.8E-12 1.2E-16 97.7 12.0 117 27-173 2-120 (122)
154 cd04610 CBS_pair_ParBc_assoc T 99.4 7.9E-12 1.7E-16 94.5 12.4 103 26-173 2-105 (107)
155 cd04640 CBS_pair_27 The CBS do 99.4 3.7E-12 7.9E-17 99.7 10.8 116 27-173 2-124 (126)
156 cd04620 CBS_pair_7 The CBS dom 99.4 4.8E-12 1E-16 97.1 11.3 108 27-173 2-113 (115)
157 COG0517 FOG: CBS domain [Gener 99.4 1E-11 2.2E-16 95.5 13.0 112 21-172 2-116 (117)
158 TIGR00393 kpsF KpsF/GutQ famil 99.4 2.7E-12 5.8E-17 114.1 10.9 111 18-168 155-268 (268)
159 cd04622 CBS_pair_9 The CBS dom 99.4 9.4E-12 2E-16 95.1 12.4 110 26-173 1-111 (113)
160 cd04632 CBS_pair_19 The CBS do 99.4 1.3E-11 2.9E-16 96.7 13.4 121 27-173 2-126 (128)
161 PTZ00314 inosine-5'-monophosph 99.4 1.5E-11 3.3E-16 117.1 16.3 114 19-174 97-215 (495)
162 cd04604 CBS_pair_KpsF_GutQ_ass 99.4 7.3E-12 1.6E-16 95.8 11.3 108 27-173 3-112 (114)
163 cd04637 CBS_pair_24 The CBS do 99.4 1.8E-11 3.9E-16 95.0 13.4 118 27-173 2-120 (122)
164 cd04635 CBS_pair_22 The CBS do 99.4 1E-11 2.2E-16 96.4 11.8 118 26-173 1-120 (122)
165 cd04634 CBS_pair_21 The CBS do 99.4 1.7E-11 3.7E-16 98.2 13.4 140 26-173 1-141 (143)
166 cd04602 CBS_pair_IMPDH_2 This 99.4 1.7E-11 3.8E-16 94.0 12.6 103 27-173 3-112 (114)
167 TIGR01302 IMP_dehydrog inosine 99.4 9.4E-12 2E-16 117.8 13.2 113 19-174 81-198 (450)
168 cd04584 CBS_pair_ACT_assoc Thi 99.3 2.3E-11 4.9E-16 94.2 12.9 117 27-173 2-119 (121)
169 cd04606 CBS_pair_Mg_transporte 99.3 1.1E-11 2.4E-16 94.2 10.3 99 30-173 1-106 (109)
170 cd04591 CBS_pair_EriC_assoc_eu 99.3 2.4E-11 5.2E-16 91.9 11.9 97 27-173 3-103 (105)
171 COG1253 TlyC Hemolysins and re 99.3 7.2E-11 1.6E-15 111.4 16.8 132 6-179 194-330 (429)
172 cd04601 CBS_pair_IMPDH This cd 99.3 2E-11 4.3E-16 92.8 10.7 104 26-173 2-108 (110)
173 TIGR01137 cysta_beta cystathio 99.3 1.8E-11 4E-16 116.9 12.9 118 15-173 332-450 (454)
174 cd04638 CBS_pair_25 The CBS do 99.3 6.4E-11 1.4E-15 89.5 12.4 102 27-173 2-104 (106)
175 cd04592 CBS_pair_EriC_assoc_eu 99.3 4.6E-11 9.9E-16 94.3 11.6 98 130-227 2-119 (133)
176 cd04609 CBS_pair_PALP_assoc2 T 99.3 7.2E-11 1.6E-15 89.6 12.0 106 27-173 2-108 (110)
177 cd02205 CBS_pair The CBS domai 99.3 1.5E-10 3.3E-15 87.7 12.7 108 27-173 2-111 (113)
178 cd04598 CBS_pair_GGDEF_assoc T 99.3 1.6E-10 3.5E-15 89.1 12.9 111 27-173 2-117 (119)
179 COG4536 CorB Putative Mg2+ and 99.2 2.6E-10 5.6E-15 100.8 12.9 135 6-180 188-327 (423)
180 PF00571 CBS: CBS domain CBS d 99.2 5.4E-11 1.2E-15 79.2 6.5 56 188-243 1-56 (57)
181 KOG2550 IMP dehydrogenase/GMP 99.2 4.8E-11 1E-15 106.1 7.3 106 130-241 117-226 (503)
182 cd04592 CBS_pair_EriC_assoc_eu 99.2 2.8E-10 6E-15 89.8 10.5 114 27-159 2-116 (133)
183 COG2239 MgtE Mg/Co/Ni transpor 99.2 2.9E-10 6.3E-15 105.9 12.1 116 118-242 131-252 (451)
184 PF00571 CBS: CBS domain CBS d 99.1 1.3E-10 2.8E-15 77.4 6.1 54 20-73 1-55 (57)
185 COG2239 MgtE Mg/Co/Ni transpor 99.1 5.8E-10 1.3E-14 103.9 12.0 123 6-173 120-249 (451)
186 TIGR01186 proV glycine betaine 99.0 1.8E-08 3.8E-13 92.7 17.0 107 131-244 252-359 (363)
187 PRK10070 glycine betaine trans 98.9 5.7E-08 1.2E-12 90.4 17.4 103 134-243 290-393 (400)
188 COG4535 CorC Putative Mg2+ and 98.9 8.1E-09 1.8E-13 85.7 8.0 131 6-178 55-190 (293)
189 KOG0474 Cl- channel CLC-7 and 98.7 2.5E-08 5.5E-13 93.5 7.0 125 115-242 578-746 (762)
190 PRK10070 glycine betaine trans 98.7 3.4E-07 7.3E-12 85.3 13.7 130 3-177 259-393 (400)
191 KOG0474 Cl- channel CLC-7 and 98.7 4.2E-08 9.2E-13 92.1 7.3 157 15-173 579-743 (762)
192 TIGR01186 proV glycine betaine 98.6 1.3E-06 2.8E-11 80.4 13.8 108 25-178 249-358 (363)
193 KOG2550 IMP dehydrogenase/GMP 98.5 2.6E-07 5.6E-12 82.7 7.3 104 26-173 116-224 (503)
194 cd04597 CBS_pair_DRTGG_assoc2 98.5 2.6E-07 5.6E-12 70.7 5.5 53 18-70 58-111 (113)
195 PRK14869 putative manganese-de 98.5 2.4E-07 5.3E-12 90.6 6.4 123 116-241 243-391 (546)
196 cd04597 CBS_pair_DRTGG_assoc2 98.4 8.6E-07 1.9E-11 67.8 5.8 55 186-240 58-112 (113)
197 COG4175 ProV ABC-type proline/ 98.3 8.8E-06 1.9E-10 71.4 10.5 163 26-243 216-383 (386)
198 smart00116 CBS Domain in cysta 98.1 1.6E-05 3.6E-10 49.7 6.1 47 195-241 1-47 (49)
199 KOG0475 Cl- channel CLC-3 and 98.0 6.8E-05 1.5E-09 71.2 11.8 111 130-241 557-693 (696)
200 KOG0475 Cl- channel CLC-3 and 98.0 3.2E-05 6.9E-10 73.3 9.6 129 28-173 558-691 (696)
201 smart00116 CBS Domain in cysta 97.9 4.2E-05 9E-10 47.8 5.7 45 28-72 2-47 (49)
202 TIGR03415 ABC_choXWV_ATP choli 97.7 0.00061 1.3E-08 63.3 12.0 106 120-243 275-380 (382)
203 KOG0476 Cl- channel CLC-2 and 97.5 0.001 2.2E-08 64.7 10.6 63 13-75 583-648 (931)
204 COG4175 ProV ABC-type proline/ 97.3 0.0005 1.1E-08 60.7 6.4 122 2-178 258-383 (386)
205 TIGR03415 ABC_choXWV_ATP choli 97.3 0.0011 2.5E-08 61.5 8.9 120 3-175 259-378 (382)
206 KOG2118 Predicted membrane pro 97.0 0.0011 2.4E-08 63.5 5.5 130 118-251 203-336 (498)
207 PF03471 CorC_HlyC: Transporte 96.7 0.00054 1.2E-08 48.8 0.6 54 266-327 20-76 (81)
208 COG1125 OpuBA ABC-type proline 96.6 0.022 4.8E-07 49.1 9.9 104 131-241 189-308 (309)
209 COG1125 OpuBA ABC-type proline 95.4 0.16 3.5E-06 44.0 9.5 116 27-173 188-306 (309)
210 cd06409 PB1_MUG70 The MUG70 pr 95.2 0.025 5.4E-07 40.3 3.5 31 313-343 2-33 (86)
211 KOG0476 Cl- channel CLC-2 and 89.4 0.56 1.2E-05 46.4 4.8 66 185-250 587-654 (931)
212 KOG2118 Predicted membrane pro 86.5 0.53 1.1E-05 45.5 2.7 129 9-177 195-328 (498)
213 PRK11388 DNA-binding transcrip 72.3 10 0.00023 38.1 6.7 92 140-235 61-163 (638)
214 PF05198 IF3_N: Translation in 57.2 24 0.00052 24.5 4.2 25 217-241 12-36 (76)
215 PF14044 NETI: NETI protein 45.5 27 0.0006 22.6 2.7 24 197-222 2-25 (57)
216 COG2216 KdpB High-affinity K+ 44.5 43 0.00093 32.4 4.9 40 36-75 414-453 (681)
217 PF11141 DUF2914: Protein of u 40.8 16 0.00035 24.6 1.2 29 302-334 36-64 (66)
218 PF14827 Cache_3: Sensory doma 40.7 29 0.00063 26.1 2.8 17 219-235 93-109 (116)
219 PRK11388 DNA-binding transcrip 33.9 82 0.0018 31.7 5.5 49 23-72 46-96 (638)
220 COG2216 KdpB High-affinity K+ 32.1 76 0.0016 30.8 4.5 36 138-173 413-448 (681)
221 cd02958 UAS UAS family; UAS is 30.0 2.1E+02 0.0046 21.0 6.1 95 138-242 4-107 (114)
222 KOG3235 Subunit of the major N 29.6 64 0.0014 26.0 3.0 54 13-66 2-59 (193)
223 COG3290 CitA Signal transducti 24.7 2.1E+02 0.0046 28.0 6.2 84 138-235 73-158 (537)
224 COG1419 FlhF Flagellar GTP-bin 22.9 5.3E+02 0.011 24.4 8.2 121 20-162 255-376 (407)
225 PF13365 Trypsin_2: Trypsin-li 22.9 55 0.0012 24.0 1.7 20 213-232 101-120 (120)
226 COG1956 GAF domain-containing 22.7 89 0.0019 25.2 2.8 17 51-67 118-134 (163)
227 PRK00028 infC translation init 22.4 85 0.0018 25.8 2.7 26 217-242 19-44 (177)
228 TIGR00168 infC translation ini 20.6 87 0.0019 25.4 2.4 26 217-242 7-32 (165)
No 1
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.94 E-value=2.2e-26 Score=204.63 Aligned_cols=196 Identities=15% Similarity=0.182 Sum_probs=163.1
Q ss_pred hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCccccccccccc
Q 019128 116 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT 193 (346)
Q Consensus 116 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~ 193 (346)
+...+++++|+|+.++++++++.++.++++.+.+++++++||++ + ++++|+++.+|++ ........ ...+.++|
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll-~~~~~~~~--~~~l~~l~- 139 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLL-PFMRSDAE--AFSMDKVL- 139 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHH-hHhhccCC--cCCHHHHc-
Confidence 45678999999988999999999999999999999999999998 4 7899999999997 44332211 23578888
Q ss_pred cCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHccCCCCCchH-HHHH-----------HH
Q 019128 194 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNE-AAST-----------MM 261 (346)
Q Consensus 194 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i~~~~~~~~~-~~~~-----------~~ 261 (346)
++++++++++++.++++.|.+++.+.+||+|++|.++|+||.+||+++++|.+.++.+...+ .... +.
T Consensus 140 r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~~~~~~~v~G~~~ 219 (292)
T PRK15094 140 RQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALAS 219 (292)
T ss_pred CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCccccccccccccEEeCCCeEEEEeccC
Confidence 56679999999999999999999999999999999999999999999999999887763321 1111 11
Q ss_pred HHHHHHhhcCCCCCCccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCCCCe
Q 019128 262 QKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLM 323 (346)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~g~~ 323 (346)
-.-.++.+.+..++++|+|++|++...++++|+.|+.+.+.++. |+|.+++|+-
T Consensus 220 l~dl~~~l~~~l~~~~~~Tl~G~i~~~l~~iP~~Gd~i~~~~~~--------f~V~~~~~~r 273 (292)
T PRK15094 220 IEDFNEAFGTHFSDEEVDTIGGLVMQAFGHLPARGETIDIDGYQ--------FKVAMADSRR 273 (292)
T ss_pred HHHHHHHhCCCCCCCCCccHHHHHHHHhCcCCCCCCEEEECCEE--------EEEEEccCCe
Confidence 22235556666676789999999999999999999999999999 9999998654
No 2
>PRK11573 hypothetical protein; Provisional
Probab=99.93 E-value=5.8e-26 Score=211.23 Aligned_cols=203 Identities=13% Similarity=0.125 Sum_probs=165.9
Q ss_pred hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe--CCEEEEEeeHHHHHHHHHhcCCCccccccccccc
Q 019128 116 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT 193 (346)
Q Consensus 116 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d--~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~ 193 (346)
+...+++++|+|+.++++++.++++.++++.+.+++++++||++ .++++|+++.+|++ .....+.......+.+++
T Consensus 184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll-~~~~~~~~~~~~~l~~~~- 261 (413)
T PRK11573 184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAY-RLMTEKKEFTKENMLRAA- 261 (413)
T ss_pred cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHH-HHhhccCcCCHHHHHhhc-
Confidence 45678999999999999999999999999999999999999998 48999999999998 443322211112344555
Q ss_pred cCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHccCCCCCch-HHH-----------HHHH
Q 019128 194 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNN-EAA-----------STMM 261 (346)
Q Consensus 194 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i~~~~~~~~-~~~-----------~~~~ 261 (346)
+++.++|+++++.++++.|++++.+.+.|+||+|.+.|+||.+||+++++|++.++.+... ... ..+.
T Consensus 262 r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~de~d~~~~~~i~~~~~~~~~v~G~~~ 341 (413)
T PRK11573 262 DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTAN 341 (413)
T ss_pred cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCcccCcccccceEEecCCEEEEEeeeE
Confidence 7899999999999999999999999999999999999999999999999999988765421 111 1122
Q ss_pred HHHHHHhhcCCCCCCccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCCC-CeEEEec
Q 019128 262 QKFWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKG-LMHRFTC 328 (346)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~g-~~~~~~~ 328 (346)
-+..+..+.+..++++|+|++|++...+|++|+.|+.+.+++|. |+|.+++| ++.|.++
T Consensus 342 l~d~~~~l~~~l~~~~~~Tl~G~i~~~lg~iP~~Ge~~~~~~~~--------f~V~~~~~~rI~~v~v 401 (413)
T PRK11573 342 VREINKAFNWHLPEDDARTVNGVILEALEEIPVAGTRVRIGEYD--------IDILDVQDNMIKQVKV 401 (413)
T ss_pred HHHHHHHhCCCCCCCCCeeHHHHHHHHhCcCCCCCCEEEECCEE--------EEEEEecCCeEEEEEE
Confidence 22335556666677789999999999999999999999999999 99999965 4544444
No 3
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.93 E-value=3.2e-26 Score=213.06 Aligned_cols=194 Identities=13% Similarity=0.141 Sum_probs=160.5
Q ss_pred hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe--CCEEEEEeeHHHHHHHHHhcCCCccccccccccc
Q 019128 116 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT 193 (346)
Q Consensus 116 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d--~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~ 193 (346)
+...+++++|+|+.++++++.++++.++++.+.+++++++||++ .++++|+++.+|++ ..... ...++.++|
T Consensus 188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll-~~~~~----~~~~l~~~~- 261 (408)
T TIGR03520 188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLL-PHLNK----KNFDWQSLL- 261 (408)
T ss_pred cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHH-hHhcc----CCCCHHHHc-
Confidence 34678999999999999999999999999999999999999998 36999999999998 44332 134577888
Q ss_pred cCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHccCCCCCchHHHH-----------HHHH
Q 019128 194 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAAS-----------TMMQ 262 (346)
Q Consensus 194 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i~~~~~~~~~~~~-----------~~~~ 262 (346)
+++.++++++++.++++.|++++.+.++|+||+|.++|+||.+||+++++|++.++.+...+... .+.-
T Consensus 262 ~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de~d~~~~~i~~~~~~~~~v~G~~~l 341 (408)
T TIGR03520 262 REPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKIDDNNYVFEGKTSL 341 (408)
T ss_pred CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCcCCcCccceEEeCCCeEEEEeccCH
Confidence 57899999999999999999999999999999999999999999999999999887653322111 1122
Q ss_pred HHHHHhhcCCC---C--CCccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCCCCe
Q 019128 263 KFWDSAMALSP---N--DDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGLM 323 (346)
Q Consensus 263 ~~~~~~~~~~~---~--~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~g~~ 323 (346)
+..++.+.+.. + +++|+|++|++...++++|+.|+.+.+.++. |+|.+++|+=
T Consensus 342 ~~l~~~l~~~~~~~~~~~~~~~Tl~G~i~~~l~~iP~~G~~~~~~~~~--------f~V~~~~~~r 399 (408)
T TIGR03520 342 KDFYKILKLEEDMFDEVKGEAETLAGFLLEISGGFPKKGEKITFENFE--------FTIEAMDKKR 399 (408)
T ss_pred HHHHHHhCCCccccCCcCCCCccHHHHHHHHhCcCCCCCCEEEECCEE--------EEEEEccCCe
Confidence 22344445442 2 3468999999999999999999999999999 9999997654
No 4
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.91 E-value=8e-25 Score=179.11 Aligned_cols=202 Identities=14% Similarity=0.169 Sum_probs=171.6
Q ss_pred CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe--CCEEEEEeeHHHHHHHHHhcCCCccccccccccccC
Q 019128 118 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN 195 (346)
Q Consensus 118 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d--~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~ 195 (346)
...++++|.|++..+++..+.++.+++..+.+..++++||+. .+.+.||+..+|++ +++..... ...+.++. +|
T Consensus 66 dl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL-~~~~~~~~--~F~i~~lL-RP 141 (293)
T COG4535 66 DLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLL-PFMRSDAE--PFDIKELL-RP 141 (293)
T ss_pred HhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHH-HHhcCCcc--cccHHHhc-cc
Confidence 456999999999999999999999999999999999999997 67899999999999 66554432 24566766 89
Q ss_pred CeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHccCCCCCchHHH-HHHHHHH----------
Q 019128 196 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAA-STMMQKF---------- 264 (346)
Q Consensus 196 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i~~~~~~~~~~~-~~~~~~~---------- 264 (346)
.+.+|++..+...++-|+..+.+++.|+||+|.+.|+||.+|+++.++|.|+++.+..++.- .+.....
T Consensus 142 av~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~ls~~~~~VrALT~Ie 221 (293)
T COG4535 142 AVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIEDEYDEEEDADIRQLSRHTWRVRALTEIE 221 (293)
T ss_pred ceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcccccccchhhhhhhHhhcCCceEEEecccHH
Confidence 99999999999999999999999999999999999999999999999999999988775422 2222222
Q ss_pred -HHHhhcCCCCCCccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCC-CCeEEEecCCC
Q 019128 265 -WDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNK-GLMHRFTCGML 331 (346)
Q Consensus 265 -~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~-g~~~~~~~g~~ 331 (346)
++..++-..++++++|.+|+++...|+.|..|+.+...++. |+|...| +++|-+.+-+.
T Consensus 222 dFNe~F~t~FsDeevDTIGGLVm~afGhLP~RGE~i~i~~~~--------FkV~~ADsRrv~~l~vt~~ 282 (293)
T COG4535 222 DFNEAFGTHFSDEEVDTIGGLVMQAFGHLPARGEKIDIGGYQ--------FKVARADSRRVIQLHVTVP 282 (293)
T ss_pred HHHHHhcCCCChhhhhhhhHHHHHHhccCCCCCCEEEEcceE--------EEEeecccceEEEEEEecC
Confidence 35666666778889999999999999999999999999999 9998875 67765555443
No 5
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.91 E-value=2e-23 Score=196.07 Aligned_cols=200 Identities=17% Similarity=0.192 Sum_probs=162.9
Q ss_pred hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe--CCEEEEEeeHHHHHHHHHhcCCCccccccccccc
Q 019128 116 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT 193 (346)
Q Consensus 116 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d--~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~ 193 (346)
+..++++++|+|+.++.+++.+.++.++.+.+.+++++++||++ .++++|+++.+|++........ .......+
T Consensus 203 l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~---~~~~~~~~- 278 (429)
T COG1253 203 LDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS---DLDLRVLV- 278 (429)
T ss_pred cCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc---ccchhhcc-
Confidence 45788999999999999999999999999999999999999999 6899999999999944443321 01111222
Q ss_pred cCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHccCCCCCchH--H----------HHHHH
Q 019128 194 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNE--A----------ASTMM 261 (346)
Q Consensus 194 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i~~~~~~~~~--~----------~~~~~ 261 (346)
++++++|+++++.++++.|++.+.|.+.|+||+|.+.|+||.+||+++++|++.++.+...+ . ...+.
T Consensus 279 ~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~~~~~~~~v~G~~~ 358 (429)
T COG1253 279 RPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQRDDDGWLVDGRVP 358 (429)
T ss_pred cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcccccccccceEecCCcEEEecccc
Confidence 49999999999999999999999999999999999999999999999999999988875321 1 11222
Q ss_pred HHHHHHhhcCCCC-CCccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCCC-CeEEEe
Q 019128 262 QKFWDSAMALSPN-DDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKG-LMHRFT 327 (346)
Q Consensus 262 ~~~~~~~~~~~~~-~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~g-~~~~~~ 327 (346)
-+..++.+.+..+ +++|+|++|++...++++|..|+.+.++++. |+|.+++| ++.|.+
T Consensus 359 l~e~~~~l~~~~~~~~~~~Ti~G~v~~~lg~iP~~g~~~~~~~~~--------~~V~~~~~~rI~~v~ 418 (429)
T COG1253 359 LEELEELLGIDLDEEEDYDTIAGLVLSLLGRIPKVGESVVIGGLR--------FEVLDMDGRRIDKVL 418 (429)
T ss_pred HHHHHHHhCCCCcccCCcccHHHHHHHHhCcCCCCCCEEEEcCCe--------EEEEEccCCcEEEEE
Confidence 2233555555533 3469999999999999999999999999999 99999975 454444
No 6
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.86 E-value=5.8e-22 Score=173.19 Aligned_cols=202 Identities=14% Similarity=0.157 Sum_probs=170.5
Q ss_pred CCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe--CCEEEEEeeHHHHHHHHHhcCCCcccccccccccc
Q 019128 117 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP 194 (346)
Q Consensus 117 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d--~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~ 194 (346)
.+.+|+|+|.||.++..++.+++.+++.+.+....+.++|+.. -++++|+++.+|++ +++.+........+..+. .
T Consensus 198 e~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~ll-r~l~e~~~~~k~d~~~~a-~ 275 (423)
T COG4536 198 ENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLL-RLLNEKNEFTKEDILRAA-D 275 (423)
T ss_pred ccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHH-HHhhccCcccHhHHHHHh-c
Confidence 4568999999999999999999999999999999999999997 46799999999998 777665433233333333 6
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHccCCCCCchHHHHHHHH-----------H
Q 019128 195 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAGSNNEAASTMMQ-----------K 263 (346)
Q Consensus 195 ~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i~~~~~~~~~~~~~~~~-----------~ 263 (346)
+|.++|+++++.+-+..|..++-|...||||+|.+.|+||.+||+++++|.+.++++...+......+ .
T Consensus 276 epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdftde~d~~~~ev~~q~dgs~iidGs~~iR 355 (423)
T COG4536 276 EPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTDEHDTLAKEVIPQSDGSFIIDGSANVR 355 (423)
T ss_pred CCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhccccccCcccchhhcccCCCcEEEeCCCcHH
Confidence 89999999999999999999999999999999999999999999999999998777766553333322 2
Q ss_pred HHHHhhcCCCCCCccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecC-CCCeEEEec
Q 019128 264 FWDSAMALSPNDDEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDN-KGLMHRFTC 328 (346)
Q Consensus 264 ~~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~-~g~~~~~~~ 328 (346)
-.++.+.+..|+++-.|..|++...++++|++|..+...++. +.|.+. ++++.+.++
T Consensus 356 dlNr~l~W~Lp~e~a~TinGLvle~le~IP~~~~~~~i~~~~--------~~Il~~~~N~I~~vri 413 (423)
T COG4536 356 DLNRALDWNLPDEDARTINGLVLEELEEIPEEGQAVRIGGYR--------IDILKVQENRIKQVKI 413 (423)
T ss_pred HHHHhcCCCCCCCcchhHHHHHHHHHHhCCCCCeEEEEcCEE--------EEEEehhhcceeeEEE
Confidence 348899999999999999999999999999999999988888 888876 455554443
No 7
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.83 E-value=5.5e-20 Score=152.90 Aligned_cols=122 Identities=25% Similarity=0.338 Sum_probs=112.5
Q ss_pred CCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCC
Q 019128 117 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 196 (346)
Q Consensus 117 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~ 196 (346)
.+.++.++|++ +++++.+++|+.++..++.++++++.||+|+++++|++|..|+. .+++++.. ...|+++|.+++
T Consensus 170 Pk~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~-~aia~g~~--~~kV~~~M~k~v 244 (294)
T COG2524 170 PKEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIA-KAIANGNL--DAKVSDYMRKNV 244 (294)
T ss_pred CcchhhhhccC--CceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHH-HHHHcCCc--cccHHHHhccCC
Confidence 34568888884 89999999999999999999999999999988999999999997 77777632 679999999999
Q ss_pred eeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHH
Q 019128 197 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 243 (346)
Q Consensus 197 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~ 243 (346)
+++.+++.+.||++.|..+++.++.|+|.+|+++|+||++||+..+.
T Consensus 245 itI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 245 ITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred ceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 99999999999999999999999999999999999999999998754
No 8
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.82 E-value=8.8e-20 Score=151.69 Aligned_cols=124 Identities=22% Similarity=0.346 Sum_probs=110.8
Q ss_pred cCCCCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhh
Q 019128 12 ELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV 91 (346)
Q Consensus 12 ~~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~ 91 (346)
-.++.+.+|.++|+++++++++++|+++|.++|.++++++.||+|+++++|++|..|+..++..
T Consensus 166 m~siPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~~aia~---------------- 229 (294)
T COG2524 166 MVSIPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAIAN---------------- 229 (294)
T ss_pred eeecCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHHHHHHc----------------
Confidence 3467889999999999999999999999999999999999999998899999999999876421
Q ss_pred hhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHH
Q 019128 92 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSK 170 (346)
Q Consensus 92 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~ 170 (346)
--...+++++|. ++++++..++.+.||+++|..+++.++.|+| +|+++|+||..
T Consensus 230 -----------------------g~~~~kV~~~M~--k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrT 284 (294)
T COG2524 230 -----------------------GNLDAKVSDYMR--KNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRT 284 (294)
T ss_pred -----------------------CCccccHHHHhc--cCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehH
Confidence 122356888887 4899999999999999999999999999999 99999999999
Q ss_pred HHHHHH
Q 019128 171 DILMRV 176 (346)
Q Consensus 171 dll~~~ 176 (346)
|++.++
T Consensus 285 DIL~~i 290 (294)
T COG2524 285 DILTRI 290 (294)
T ss_pred HHHHHh
Confidence 999444
No 9
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.77 E-value=1.1e-17 Score=162.89 Aligned_cols=216 Identities=20% Similarity=0.229 Sum_probs=151.7
Q ss_pred cccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhh
Q 019128 17 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE 95 (346)
Q Consensus 17 ~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (346)
..+|+|+|.++++++++++++.+|+++|.+++++.+||+| +|+++|+++..|+.+.+....... ........+..+.
T Consensus 67 ~~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~~--~~~~~~~t~~~i~ 144 (546)
T PRK14869 67 KPQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPE--ILSKSPTSLENII 144 (546)
T ss_pred CCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcchh--hhhhcCCCHHHHH
Confidence 3689999999999999999999999999999999999999 799999999999988766543211 1111122222233
Q ss_pred hccCCCCCChhhHHHH-HHHH----hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCC---------
Q 019128 96 KHWGTSISGPNTFIET-LRER----MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN--------- 161 (346)
Q Consensus 96 ~~~g~~~~~~~~~~~~-~~~~----~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~--------- 161 (346)
+.++............ .... +....+.+.|.+ ..++++.....+ ...+.+.++++++|+.+.
T Consensus 145 ~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~-~~lvi~gdr~d~---~~~ai~~~~~~lIlt~g~~~~~~v~~l 220 (546)
T PRK14869 145 RTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEE-GDIVIVGDREDI---QLAAIEAGVRLLIITGGAPVSEDVLEL 220 (546)
T ss_pred HhcCcEEEecCcccccccccEEEEEcCHHHHHHhccC-CCEEEEcCcHHH---HHHHHHcCCCEEEECCCCCCCHHHHHH
Confidence 3332222111100000 0000 000112223443 346666555544 335688899999998722
Q ss_pred ----EEEEEeeHHHHHHHHHhcCCCccccccccccc-cCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehH
Q 019128 162 ----KPRGILTSKDILMRVISQNLPADSTLVEKVMT-PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVI 236 (346)
Q Consensus 162 ----~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~ 236 (346)
.+.+++|..|.+. ....-. ...+++++|+ +++.++++++++.++.+.|.+++++.+||+|++|+++|+||..
T Consensus 221 a~~~~i~ii~t~~dt~~-t~~~l~--~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~ 297 (546)
T PRK14869 221 AKENGVTVISTPYDTFT-TARLIN--QSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRY 297 (546)
T ss_pred HHhCCCeEEEecccHHH-HHHHhh--cCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHH
Confidence 4788999999873 332211 2679999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 019128 237 HITHA 241 (346)
Q Consensus 237 Di~~~ 241 (346)
|+++.
T Consensus 298 dl~~~ 302 (546)
T PRK14869 298 HLLSP 302 (546)
T ss_pred Hhhcc
Confidence 99975
No 10
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.74 E-value=1.8e-17 Score=127.97 Aligned_cols=122 Identities=19% Similarity=0.309 Sum_probs=104.9
Q ss_pred CcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhh
Q 019128 16 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE 95 (346)
Q Consensus 16 ~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (346)
...+++.+|+.+++++.|++++.+|+++|.+++++.+||+++++++|-+|..++.+..++.++
T Consensus 63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~e----------------- 125 (187)
T COG3620 63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGME----------------- 125 (187)
T ss_pred ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhcccc-----------------
Confidence 578999999999999999999999999999999999999999999999999999987654331
Q ss_pred hccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHH
Q 019128 96 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR 175 (346)
Q Consensus 96 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~ 175 (346)
.....+++++|.. .++++++++++..+.+++..+ .++.|+++|+++||||..|++ +
T Consensus 126 -------------------~i~~~~vr~vM~e--~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e~G~~vGIITk~DI~-k 181 (187)
T COG3620 126 -------------------SIRSLRVREVMGE--PFPTVSPDESLNVISQLLEEH--PAVLVVENGKVVGIITKADIM-K 181 (187)
T ss_pred -------------------chhhhhHHHHhcC--CCCcCCCCCCHHHHHHHHhhC--CeEEEEeCCceEEEEeHHHHH-H
Confidence 1223457788874 789999999999999888765 568888999999999999998 6
Q ss_pred HHh
Q 019128 176 VIS 178 (346)
Q Consensus 176 ~~~ 178 (346)
+++
T Consensus 182 ~~~ 184 (187)
T COG3620 182 LLA 184 (187)
T ss_pred HHh
Confidence 554
No 11
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.74 E-value=1.6e-17 Score=140.88 Aligned_cols=131 Identities=20% Similarity=0.310 Sum_probs=114.1
Q ss_pred CCCCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhh
Q 019128 13 LNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV 91 (346)
Q Consensus 13 ~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~ 91 (346)
....+++..|||+++++++++++++.+|.++|++|+++.+||+| +.+++|+|+.+|+++..-
T Consensus 240 R~~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~----------------- 302 (382)
T COG3448 240 RRMGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHAR----------------- 302 (382)
T ss_pred HHhccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccC-----------------
Confidence 35678999999999999999999999999999999999999999 689999999999986310
Q ss_pred hhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHH
Q 019128 92 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSK 170 (346)
Q Consensus 92 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~ 170 (346)
..+.+.+. .+..++++.+|++ ++.++.++++..+++-.+.+.+.+++||+| .|+++||||+.
T Consensus 303 --------------~~p~qrlr-~~~~~~vk~imt~--~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQt 365 (382)
T COG3448 303 --------------PSPFQRLR-FLRPPTVKGIMTT--PVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQT 365 (382)
T ss_pred --------------cchHHHhh-ccCCCcccccccC--cceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHH
Confidence 02233343 5677889999984 799999999999999999999999999999 99999999999
Q ss_pred HHHHHHH
Q 019128 171 DILMRVI 177 (346)
Q Consensus 171 dll~~~~ 177 (346)
|++..+.
T Consensus 366 Dliaal~ 372 (382)
T COG3448 366 DLIAALY 372 (382)
T ss_pred HHHHHHH
Confidence 9984443
No 12
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.71 E-value=1.8e-16 Score=134.46 Aligned_cols=131 Identities=26% Similarity=0.316 Sum_probs=112.5
Q ss_pred HHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHh----cCCCccccc
Q 019128 113 RERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVIS----QNLPADSTL 187 (346)
Q Consensus 113 ~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~----~~~~~~~~~ 187 (346)
...+...+..+||.+ +++++++++++.+|.+.|.+++++.+||+| +.+++|+||.+|++..+-. .-.......
T Consensus 239 ~R~~~~LtcadIMSr--dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~ 316 (382)
T COG3448 239 RRRMGELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPT 316 (382)
T ss_pred HHHhccccHHHhcCc--cceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhhccCCCc
Confidence 345566778999984 999999999999999999999999999999 7899999999999842111 001112467
Q ss_pred cccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHH
Q 019128 188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVAT 245 (346)
Q Consensus 188 v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~ 245 (346)
++.+|+.++.++.++++..+++-.+.+.+.+++||+|+.|+++||||.+|++.+...+
T Consensus 317 vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~ 374 (382)
T COG3448 317 VKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRN 374 (382)
T ss_pred ccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999875443
No 13
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.68 E-value=3.3e-16 Score=120.94 Aligned_cols=120 Identities=24% Similarity=0.285 Sum_probs=104.9
Q ss_pred CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCe
Q 019128 118 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE 197 (346)
Q Consensus 118 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~ 197 (346)
..+...+|. ++++.+.|++++.++.++|.+++++.+||+++|+++|-||..++.+..+....+..+..++++|..+++
T Consensus 64 ~ita~~iM~--spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~fP 141 (187)
T COG3620 64 RITAKTIMH--SPVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGMESIRSLRVREVMGEPFP 141 (187)
T ss_pred eEeHhhhcc--CCeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhccccchhhhhHHHHhcCCCC
Confidence 345788897 589999999999999999999999999999999999999999998555544455567889999999999
Q ss_pred eecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHH
Q 019128 198 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 242 (346)
Q Consensus 198 ~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~ 242 (346)
+++++.++..+..++..++ .+.|+ ++|+++||||..||++.+
T Consensus 142 ~Vs~~~~l~vI~~LL~~~~--AVlV~-e~G~~vGIITk~DI~k~~ 183 (187)
T COG3620 142 TVSPDESLNVISQLLEEHP--AVLVV-ENGKVVGIITKADIMKLL 183 (187)
T ss_pred cCCCCCCHHHHHHHHhhCC--eEEEE-eCCceEEEEeHHHHHHHH
Confidence 9999999999998887765 46777 689999999999999864
No 14
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.68 E-value=1.1e-15 Score=117.52 Aligned_cols=110 Identities=24% Similarity=0.314 Sum_probs=96.9
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhc-CCCccccccccccccCCeeecCCCCHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ-NLPADSTLVEKVMTPNPECATIDTPIVD 207 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~-~~~~~~~~v~~~m~~~~~~v~~~~~l~~ 207 (346)
.+.++++++++.++++.|.+.+...+||++ +|+++|++|.+|++ +.... .......++.++|.+++.++++++++.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~-~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 80 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVV-RQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHD 80 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHH-HHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHH
Confidence 367899999999999999999999999998 88999999999997 44432 1122256789999999999999999999
Q ss_pred HHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 208 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 208 ~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
+++.|.+++..++||+|++|+++|+||..|+++
T Consensus 81 a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 81 VWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred HHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 999999999999999998899999999999874
No 15
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.67 E-value=1.3e-15 Score=117.01 Aligned_cols=110 Identities=28% Similarity=0.343 Sum_probs=96.9
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 207 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~ 207 (346)
++.++.+++++.++++.|.+.+++.+||++ + ++++|+++.+|+++.+..........++.++|.+++.++++++++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 81 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKY 81 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHH
Confidence 478899999999999999999999999998 5 89999999999984454443333346788999889999999999999
Q ss_pred HHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 208 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 208 ~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
+++.|.+.+.+.+||+|+ |+++|+||..|+++
T Consensus 82 ~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 82 CARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred HHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 999999999999999997 99999999999975
No 16
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.67 E-value=1.5e-15 Score=116.21 Aligned_cols=108 Identities=23% Similarity=0.268 Sum_probs=94.9
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 208 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~ 208 (346)
++.++++++++.++++.|.+.+.+.+||++ +++++|+++..|+. +.... .....++.++|..++.++++++++.++
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~-~~~~~--~~~~~~v~~~~~~~~~~v~~~~~l~~a 78 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLL-EIGPN--DYETLKVCEVYIVPVPIVYCDSKVTDL 78 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHH-hhccc--cccccChhheeecCCcEECCCCcHHHH
Confidence 467899999999999999999999999998 78999999999996 43211 111357889999899999999999999
Q ss_pred HHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 209 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 209 ~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
++.|.+++.+++||+|++|+++|+||..|+++
T Consensus 79 l~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 79 LRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred HHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 99999999999999998899999999999975
No 17
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.66 E-value=2.1e-15 Score=117.07 Aligned_cols=110 Identities=14% Similarity=0.192 Sum_probs=91.9
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCC-cccccc------ccccccCCeeecC
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP-ADSTLV------EKVMTPNPECATI 201 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~-~~~~~v------~~~m~~~~~~v~~ 201 (346)
++.++++++++.++++.|.+++.+.+||++ +|+++|+++.+|++ .+...+.. ....++ ...|..++.++++
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVI-NLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSP 80 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHH-HHHhcCccccccCCHHHHHhhcccCCCCCeEEcC
Confidence 578899999999999999999999999998 88999999999998 54433211 111112 2344566789999
Q ss_pred CCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 202 DTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 202 ~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
++++.++++.|.+++.+.+||+|++|+++|+||..|+++
T Consensus 81 ~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 81 DDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred CCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 999999999999999999999998899999999999975
No 18
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.66 E-value=1.3e-15 Score=143.38 Aligned_cols=149 Identities=24% Similarity=0.305 Sum_probs=122.5
Q ss_pred HHHhhhhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEE
Q 019128 79 RAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVT 158 (346)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~ 158 (346)
+.++..++++.+..+ |.++++.+-..+...+.....++.++|.. +++++.+++++.++++.|.+++++.+||+
T Consensus 53 tvTe~~MAi~~A~~G-----GigvIh~n~~i~~qae~v~~VKv~eim~~--~pvtv~p~~tI~eA~~lm~~~~~~~~vVv 125 (475)
T TIGR01303 53 AVAGRRMAETVARRG-----GIVILPQDLPIPAVKQTVAFVKSRDLVLD--TPITLAPHDTVSDAMALIHKRAHGAAVVI 125 (475)
T ss_pred hhHHHHHHHHHHHCC-----CEEEEeCCCCHHHHHHHHhhcchhhcccc--CCeEECCCCCHHHHHHHHHhcCCeEEEEE
Confidence 333444445555555 66667666445555555556677888874 78999999999999999999999999999
Q ss_pred eCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHH
Q 019128 159 VENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHI 238 (346)
Q Consensus 159 d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di 238 (346)
++++++|++|.+|+. .. .. ..+++++|+++++++++++++.++++.|.+++++++||+|++|+++|+||.+||
T Consensus 126 D~gklvGIVT~rDL~-~~-----~~-~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DL 198 (475)
T TIGR01303 126 LEDRPVGLVTDSDLL-GV-----DR-FTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGA 198 (475)
T ss_pred ECCEEEEEEEHHHhh-cC-----CC-CCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHH
Confidence 988999999999984 21 11 357999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 019128 239 THA 241 (346)
Q Consensus 239 ~~~ 241 (346)
++.
T Consensus 199 l~~ 201 (475)
T TIGR01303 199 LRA 201 (475)
T ss_pred HHH
Confidence 986
No 19
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.66 E-value=1.3e-15 Score=143.57 Aligned_cols=134 Identities=25% Similarity=0.282 Sum_probs=114.5
Q ss_pred CCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHH
Q 019128 99 GTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVI 177 (346)
Q Consensus 99 g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~ 177 (346)
|.+.++.+-..+...+.+...++.++|.. +++++++++++.++++.|.+++++++||+| +++++|+||.+|+. ..
T Consensus 69 GiGvih~nl~~~~q~~~l~~VKv~~iMi~--~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~-~~- 144 (479)
T PRK07807 69 GLVVLPQDIPIDVVAEVVAWVKSRDLVFD--TPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCA-GV- 144 (479)
T ss_pred CceEeeCCCCHHHHHHHHhhccccccccc--CCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHh-cC-
Confidence 44555554444455555666677899974 899999999999999999999999999998 78999999999994 21
Q ss_pred hcCCCccccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128 178 SQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241 (346)
Q Consensus 178 ~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~ 241 (346)
.. ..++.++|++++.++++++++.++++.|.+++.+.+||+|++|+++|+||..||++.
T Consensus 145 ----~~-~~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~ 203 (479)
T PRK07807 145 ----DR-FTQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRA 203 (479)
T ss_pred ----cc-CCCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence 11 357999999999999999999999999999999999999999999999999999986
No 20
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.66 E-value=1.4e-15 Score=113.66 Aligned_cols=93 Identities=22% Similarity=0.267 Sum_probs=84.9
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 207 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~ 207 (346)
+++++++++++.++.+.|.+++++++||++ + |+++|++|.+|+. +... +.++.+++++.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~-~~~~-----------------~~~v~~~~~l~~ 63 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFI-LILR-----------------LVSIHPERSLFD 63 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHh-hhee-----------------eEEeCCCCcHHH
Confidence 478999999999999999999999999998 4 7999999999997 3211 778999999999
Q ss_pred HHHHhHhCCCceeEEEcCC-CcEEEEEehHHHHH
Q 019128 208 ALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITH 240 (346)
Q Consensus 208 ~~~~m~~~~~~~~~Vvd~~-g~~~Giit~~Di~~ 240 (346)
+++.|.+++++++||+|++ |+++|+||.+|++.
T Consensus 64 a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 64 AALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred HHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 9999999999999999987 99999999999975
No 21
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.65 E-value=4.1e-15 Score=138.79 Aligned_cols=162 Identities=14% Similarity=0.162 Sum_probs=124.6
Q ss_pred HHHhhcCCCCcccccccccC--CCeeecCCccHHHHHHHHHhCCcceeeeeeC--CeEEEEEehHHHHHHHHHHHHHHHh
Q 019128 7 RVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAE 82 (346)
Q Consensus 7 ~~~~~~~~~~~~~v~dim~~--~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~--~~~vGivt~~dll~~~~~~~~~~~~ 82 (346)
.++.+..++.+.+|+|+|++ ++++++.++++.++++.|.+++++++||+++ ++++|+++.+|++....
T Consensus 180 ~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~-------- 251 (408)
T TIGR03520 180 KILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN-------- 251 (408)
T ss_pred HHHHHHhccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc--------
Confidence 45566669999999999996 7899999999999999999999999999983 68999999999975310
Q ss_pred hhhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CC
Q 019128 83 KGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN 161 (346)
Q Consensus 83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~ 161 (346)
+ ...++.++|. ++.++++++++.++++.|.+++.+..+|+| .|
T Consensus 252 -------------------------------~--~~~~l~~~~~---~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G 295 (408)
T TIGR03520 252 -------------------------------K--KNFDWQSLLR---EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYG 295 (408)
T ss_pred -------------------------------c--CCCCHHHHcC---CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCC
Confidence 0 0112445554 478999999999999999999999999999 69
Q ss_pred EEEEEeeHHHHHHHHHhcCCCccccccccccc---cCCeeecCCCCHHHHHHHhH
Q 019128 162 KPRGILTSKDILMRVISQNLPADSTLVEKVMT---PNPECATIDTPIVDALHIMH 213 (346)
Q Consensus 162 ~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~---~~~~~v~~~~~l~~~~~~m~ 213 (346)
.+.|+||..|+++.+..+-.+..+ .-.+.+. .....++...++.++.+.|.
T Consensus 296 ~~~GiVT~eDileeivgei~de~d-~~~~~i~~~~~~~~~v~G~~~l~~l~~~l~ 349 (408)
T TIGR03520 296 GTSGLVTLEDIIEEIVGDISDEFD-DEDLIYSKIDDNNYVFEGKTSLKDFYKILK 349 (408)
T ss_pred CEEEEEEHHHHHHHHhCCCCCcCC-cCccceEEeCCCeEEEEeccCHHHHHHHhC
Confidence 999999999999666554322211 1122221 33466677777777777763
No 22
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.65 E-value=5.9e-15 Score=131.52 Aligned_cols=165 Identities=13% Similarity=0.138 Sum_probs=121.0
Q ss_pred HHHHhhcCCCCcccccccccC--CCeeecCCccHHHHHHHHHhCCcceeeeee-C-CeEEEEEehHHHHHHHHHHHHHHH
Q 019128 6 TRVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAA 81 (346)
Q Consensus 6 ~~~~~~~~~~~~~~v~dim~~--~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~-~~~vGivt~~dll~~~~~~~~~~~ 81 (346)
+.++.+...+.+.+|+++|++ +++++++++|+.++++.+.+++++++||++ + ++++|+|+.+|++.....
T Consensus 55 ~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~------ 128 (292)
T PRK15094 55 RDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS------ 128 (292)
T ss_pred HHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhc------
Confidence 345666669999999999997 689999999999999999999999999998 4 789999999999753100
Q ss_pred hhhhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C
Q 019128 82 EKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E 160 (346)
Q Consensus 82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~ 160 (346)
.....++.++|.+ ++++++++++.++++.|.+++.+.+||+| .
T Consensus 129 ---------------------------------~~~~~~l~~l~r~---~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~ 172 (292)
T PRK15094 129 ---------------------------------DAEAFSMDKVLRQ---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEF 172 (292)
T ss_pred ---------------------------------cCCcCCHHHHcCC---CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCC
Confidence 0001124556653 66899999999999999999999999999 7
Q ss_pred CEEEEEeeHHHHHHHHHhcCCCccccccc-ccc--ccCCeeecCCCCHHHHHHHh
Q 019128 161 NKPRGILTSKDILMRVISQNLPADSTLVE-KVM--TPNPECATIDTPIVDALHIM 212 (346)
Q Consensus 161 ~~~~Giit~~dll~~~~~~~~~~~~~~v~-~~m--~~~~~~v~~~~~l~~~~~~m 212 (346)
|.++|+||..|++..+...-.+.....-. .+- ...-+.++..+++.++.+.+
T Consensus 173 G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~~~~~~~v~G~~~l~dl~~~l 227 (292)
T PRK15094 173 GGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALASIEDFNEAF 227 (292)
T ss_pred CCEEEEeEHHHHHHHHhCCCccccccccccccEEeCCCeEEEEeccCHHHHHHHh
Confidence 88999999999996555432221111100 011 12335555666666655554
No 23
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.64 E-value=8.6e-15 Score=134.94 Aligned_cols=118 Identities=27% Similarity=0.368 Sum_probs=108.2
Q ss_pred CccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCee
Q 019128 120 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC 198 (346)
Q Consensus 120 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~ 198 (346)
.+.++++ .++++|++.+++.+|.+.|.+.|++.+.+++ ++...||||.+|+..+.++++.+. ..+|+++|+.|+++
T Consensus 150 rv~~~~~--~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~-~~~V~evmT~p~~s 226 (610)
T COG2905 150 RVGEVKT--LPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK-TQKVSEVMTSPVIS 226 (610)
T ss_pred HHHHHhc--CCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc-ccchhhhhccCcee
Confidence 3555665 3789999999999999999999999888888 899999999999998888877765 78999999999999
Q ss_pred ecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128 199 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241 (346)
Q Consensus 199 v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~ 241 (346)
+..++.+.+|+-.|..++++++||++ +|+++|+||.+||++.
T Consensus 227 vd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l 268 (610)
T COG2905 227 VDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRL 268 (610)
T ss_pred ecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHh
Confidence 99999999999999999999999997 7999999999999986
No 24
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.64 E-value=2e-15 Score=137.87 Aligned_cols=123 Identities=22% Similarity=0.279 Sum_probs=106.9
Q ss_pred CCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccC
Q 019128 117 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN 195 (346)
Q Consensus 117 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~ 195 (346)
...+++++|.+.++++++++++++.++++.|.+++.+.+||++ +|+++|++|.+|+. +....+......++.++|.++
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~-~~~~~~~~~~~~~v~~im~~~ 278 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLR-RVFDMGIDLRQASIADVMTPG 278 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHH-HHHhcCCCcccCCHHHhcCCC
Confidence 3456889998434789999999999999999999988888888 89999999999996 555544333346899999999
Q ss_pred CeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128 196 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241 (346)
Q Consensus 196 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~ 241 (346)
+.++.+++++.++++.|.+++++++||+| +|+++|+||..|++++
T Consensus 279 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 279 GIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred CEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 99999999999999999999999999998 6899999999999986
No 25
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.64 E-value=9.6e-16 Score=145.10 Aligned_cols=177 Identities=18% Similarity=0.183 Sum_probs=142.2
Q ss_pred HHhhcCCCCcccccccccCCCeeecCCccHHHHHHHHHh-----CCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHH
Q 019128 8 VIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQ-----GKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAA 81 (346)
Q Consensus 8 ~~~~~~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~-----~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~ 81 (346)
.+.....+.+.+++++|+++++++++++|+.+|++.|.+ ++...+||+| +++++|+++.+|++..
T Consensus 121 ~i~~ll~~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a--------- 191 (449)
T TIGR00400 121 AINLLLSYSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA--------- 191 (449)
T ss_pred HHHHHhCCCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC---------
Confidence 344555888999999999999999999999999999975 4567889998 7899999999998642
Q ss_pred hhhhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C
Q 019128 82 EKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E 160 (346)
Q Consensus 82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~ 160 (346)
....+++++|.+ +++++++++++.++++.|.+++...+||+| +
T Consensus 192 ----------------------------------~~~~~v~~im~~--~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~ 235 (449)
T TIGR00400 192 ----------------------------------KPEEILSSIMRS--SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNE 235 (449)
T ss_pred ----------------------------------CCCCcHHHHhCC--CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCC
Confidence 012346777764 688899999999999999999999999999 7
Q ss_pred CEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 161 NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 161 ~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
|+++|+||.+|++ ..+.+. ..+++|....++..+++.+..++..|.+++..+++|. .+.|++| ..++.
T Consensus 236 g~lvGiIt~~Dil-~~l~~~------~~ed~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~----~~~~~~t-~~ii~ 303 (449)
T TIGR00400 236 GRLVGIVTVDDII-DVIQSE------ATEDFYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVL----LVSSTFT-ATIIS 303 (449)
T ss_pred CeEEEEEEHHHHH-HHHHhh------hHHHHHHhcCCCCCcchhhhchHHHHHHhccchHHHH----HHHHHHH-HHHHH
Confidence 9999999999998 444332 2367776666655567888999999999999999986 4666666 44444
Q ss_pred H
Q 019128 241 A 241 (346)
Q Consensus 241 ~ 241 (346)
.
T Consensus 304 ~ 304 (449)
T TIGR00400 304 N 304 (449)
T ss_pred H
Confidence 3
No 26
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.64 E-value=3.9e-15 Score=115.19 Aligned_cols=110 Identities=21% Similarity=0.259 Sum_probs=94.6
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCcccccccccccc--CCeeecCCCCHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPIV 206 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~ 206 (346)
++.++++++++.++++.|.+++.+++||++ +++++|++|..|+.+... ........++.++|.+ ++.++++++++.
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~ 80 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASI-GGADLQKVPVGVIMTRMPNITTTTPEESVL 80 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHH-cCCCccCCCHHHHhCCCCCcEEECCCCcHH
Confidence 467899999999999999999999999998 689999999999974433 2222224567889974 688999999999
Q ss_pred HHHHHhHhCCCceeEEEcCC---CcEEEEEehHHHHH
Q 019128 207 DALHIMHDGKFLHLPVVDRD---GDVVDVVDVIHITH 240 (346)
Q Consensus 207 ~~~~~m~~~~~~~~~Vvd~~---g~~~Giit~~Di~~ 240 (346)
++++.|.+++.+++||+|++ |+++|+||..|+++
T Consensus 81 ~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 81 EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 99999999999999999987 69999999999864
No 27
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.64 E-value=4.4e-15 Score=114.25 Aligned_cols=110 Identities=27% Similarity=0.397 Sum_probs=96.2
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 208 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~ 208 (346)
++.++.+++++.++++.|.+.+.+.+||++ +|+++|+++.+|++ ............++.++|.+++.++++++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~ 80 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLL-RALEADEAGEPSAVDEVATPPLLTVHPDEPLAHA 80 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHH-HHHhcccccccccHHHhccCCceEECCCCCHHHH
Confidence 466789999999999999999999999999 79999999999997 5444333222445888998999999999999999
Q ss_pred HHHhHhCCCceeEEEcCC--CcEEEEEehHHHHH
Q 019128 209 LHIMHDGKFLHLPVVDRD--GDVVDVVDVIHITH 240 (346)
Q Consensus 209 ~~~m~~~~~~~~~Vvd~~--g~~~Giit~~Di~~ 240 (346)
++.|.+++...+||+|++ |+++|+||..|+++
T Consensus 81 l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 81 LDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred HHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 999999999999999987 89999999999986
No 28
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.64 E-value=1.6e-15 Score=118.51 Aligned_cols=111 Identities=17% Similarity=0.129 Sum_probs=95.9
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 208 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~ 208 (346)
++.+++++.++.++++.|.+++.+.+||++ +++++|+++.+|++..+..... ....++.++|.+++.++.+++++.++
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~-~~~~~v~~im~~~~~~v~~~~~~~~v 81 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKV-QPSDPVSKALYKQFKRVNKNDTLGKL 81 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhcc-CCCCcHHHHhhccceecCCCCCHHHH
Confidence 578899999999999999999999999998 6899999999999844443332 23679999999999999999999999
Q ss_pred HHHhH---------hCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128 209 LHIMH---------DGKFLHLPVVDRDGDVVDVVDVIHITHA 241 (346)
Q Consensus 209 ~~~m~---------~~~~~~~~Vvd~~g~~~Giit~~Di~~~ 241 (346)
.+.|. ..+.+++||+|++|+++|+||..|++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 82 SRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred HhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 99653 3367889999988999999999999975
No 29
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.63 E-value=7.1e-15 Score=112.59 Aligned_cols=111 Identities=58% Similarity=0.840 Sum_probs=97.1
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 209 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~ 209 (346)
++.++.+++++.++++.|.+.+.+.+||+++++++|+++.+|++..+...+......++.++|.+++.++++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLEAL 81 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHHHHH
Confidence 46789999999999999999999999999889999999999997455444333222578899988999999999999999
Q ss_pred HHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 210 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 210 ~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
+.|..++..++||+|++|+++|+||..|++.
T Consensus 82 ~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 82 HLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred HHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 9999999999999998899999999999874
No 30
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.63 E-value=7.8e-15 Score=112.24 Aligned_cols=110 Identities=33% Similarity=0.479 Sum_probs=95.3
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 208 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~ 208 (346)
++.+++++.++.++++.|.+.+++++||++ +++++|+++.+|++..+..........++.++|.+++.++++++++.++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 81 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEA 81 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHHH
Confidence 467889999999999999999999999998 6899999999999843333222222457889998899999999999999
Q ss_pred HHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 209 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 209 ~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
++.|.+.+.+.+||+++ |+++|+||..|+++
T Consensus 82 l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 82 MALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred HHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 99999999999999997 99999999999975
No 31
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.62 E-value=6.9e-15 Score=114.66 Aligned_cols=111 Identities=27% Similarity=0.417 Sum_probs=97.1
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCC----------ccccccccccccCCe
Q 019128 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP----------ADSTLVEKVMTPNPE 197 (346)
Q Consensus 129 ~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~----------~~~~~v~~~m~~~~~ 197 (346)
+++.+++++.++.++.+.|.+.+++++||++ +|+++|+++.+|++ ........ ....++.++|.+++.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLL-RHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV 80 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHH-hhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence 3678899999999999999999999999998 69999999999997 44332211 124478899999999
Q ss_pred eecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 198 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 198 ~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
++++++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 81 TVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred eeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 9999999999999999999999999999999999999999985
No 32
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.62 E-value=1e-14 Score=111.87 Aligned_cols=109 Identities=27% Similarity=0.412 Sum_probs=96.0
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 208 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~ 208 (346)
.+.++++++++.++++.|.+.+...+||++ +++++|+++.+|++ +....+... ..++.++|..++.++++++++.++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~-~~~~~~~~~-~~~v~~~~~~~~~~v~~~~~l~~~ 80 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIR-RALLKGLSL-DDPVSEVMNRNPITAKVGSSREEI 80 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHH-HHHhcCCCc-CCCHHHhhcCCCEEEcCCCCHHHH
Confidence 367799999999999999999999999998 78999999999997 544433332 457889998889999999999999
Q ss_pred HHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 209 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 209 ~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
++.|.+++.+++||+|++|+++|+||..|++.
T Consensus 81 ~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 81 LALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred HHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 99999999999999999999999999999874
No 33
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.62 E-value=1.9e-14 Score=132.17 Aligned_cols=189 Identities=19% Similarity=0.223 Sum_probs=144.7
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeee--CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCC
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 104 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd--~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 104 (346)
+++.+.+..++.++...+.+++++++||.| .++++.++|.+.+++++........
T Consensus 163 ~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~----------------------- 219 (381)
T KOG1764|consen 163 PFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLP----------------------- 219 (381)
T ss_pred CceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccc-----------------------
Confidence 338999999999999999999999999998 5899999999999887543211100
Q ss_pred hhhHHHHHHHHhCCCCccccccCC-CceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcC-C
Q 019128 105 PNTFIETLRERMFRPSLSTIIPEK-SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-L 181 (346)
Q Consensus 105 ~~~~~~~~~~~~~~~~v~~im~~~-~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~-~ 181 (346)
...+...++.++-... ..+..+..++++.+|++.|...+++.+||++ .|+.+|+++..|+. .+..++ .
T Consensus 220 --------~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~-~l~~~~~~ 290 (381)
T KOG1764|consen 220 --------LPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVI-HLAREGTY 290 (381)
T ss_pred --------cHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhh-hhhhcCcc
Confidence 0001112222222111 2488899999999999999999999999999 77789999999997 444432 2
Q ss_pred Cccccc-ccccc------ccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHcc
Q 019128 182 PADSTL-VEKVM------TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVG 247 (346)
Q Consensus 182 ~~~~~~-v~~~m------~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i~ 247 (346)
...... +.... ..+++++.++.++.+++.+|..++.|+++|||++|.++|+||..|++.+++..-.
T Consensus 291 ~~~~~~~l~~~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~p~ 363 (381)
T KOG1764|consen 291 NNLDLSCLSEALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLTPS 363 (381)
T ss_pred CccchhHHHHHhhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhCcc
Confidence 222222 22222 2457999999999999999999999999999999999999999999998766543
No 34
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.62 E-value=1.1e-14 Score=112.08 Aligned_cols=110 Identities=25% Similarity=0.345 Sum_probs=94.2
Q ss_pred ceeEeCCCCcHHHHHHHHHHcC-CcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCC--CCHH
Q 019128 130 KVVTISPTDTVLMATKKMLELR-LSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATID--TPIV 206 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~-~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~--~~l~ 206 (346)
++.+++++.++.++++.|.+.+ ...+||+++|+++|+++..|++ +....+......++.++|.+++.+++++ +++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~-~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~l~ 80 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIV-RLTAIGKDLSDLPIGEVMTQPVVTLQESEIQDIF 80 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHH-HHHhcCCCccccCHHHhcCCCcEEEecccccCHH
Confidence 3667899999999999998888 6778888888999999999997 5554433222457889998888999887 7899
Q ss_pred HHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 207 DALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 207 ~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
++++.|.+++...+||+|++|+++|+||..|+++
T Consensus 81 ~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 81 TALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred HHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 9999999999999999999999999999999985
No 35
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.62 E-value=5.8e-15 Score=134.57 Aligned_cols=122 Identities=19% Similarity=0.275 Sum_probs=106.5
Q ss_pred CCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCC
Q 019128 118 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 196 (346)
Q Consensus 118 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~ 196 (346)
..+++++|.+..+++++++++++.++++.|.+.+...+||+| +|+++|+++..|+. +.+..+... ..++.++|.+++
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~-~~~~~~~~~-~~~v~~im~~~~ 273 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLR-RWLVGGGAL-TTPVNEAMTRGG 273 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHH-HHHhCCCCc-CCcHHHhcCCCC
Confidence 356888887522389999999999999999999999999999 88999999999996 554433222 457899999999
Q ss_pred eeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128 197 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241 (346)
Q Consensus 197 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~ 241 (346)
.++.+++++.++++.|.+++...+||+|++|+++|+||..|++++
T Consensus 274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 274 TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 999999999999999999999999999998999999999999976
No 36
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.62 E-value=1.5e-14 Score=110.72 Aligned_cols=111 Identities=32% Similarity=0.478 Sum_probs=97.4
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 209 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~ 209 (346)
++.++.+++++.++.+.|.+.+.+++||+++|+++|+++..|++.+....+......++.++|...+.++++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 81 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDEAA 81 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHHHHH
Confidence 46789999999999999999999999999999999999999986444444433323358899988999999999999999
Q ss_pred HHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 210 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 210 ~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
+.|...+.+++||+|++|+++|+||..|+++
T Consensus 82 ~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 82 RLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred HHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 9999999999999998899999999999975
No 37
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.61 E-value=2.1e-14 Score=109.49 Aligned_cols=109 Identities=31% Similarity=0.481 Sum_probs=96.8
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 209 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~ 209 (346)
++.+++++.++.++++.|.+.+.+.+||+++++++|+++.+|++ ++...... ...++.++|.+++.++++++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~-~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~l~~~l 79 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDIL-RLLASGPD-LQTPVGEVMSSPLLTVPADTSLYDAR 79 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHH-HHHhcCCC-CCcCHHHhcCCCceEECCCCCHHHHH
Confidence 46789999999999999999999999999989999999999997 55443332 35678999988999999999999999
Q ss_pred HHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 210 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 210 ~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
+.|.+.+.+.+||+|++|++.|+||.+|+++
T Consensus 80 ~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 80 QLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred HHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 9999999999999998899999999999874
No 38
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.61 E-value=1.3e-14 Score=113.55 Aligned_cols=110 Identities=22% Similarity=0.208 Sum_probs=92.6
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccc-------------cccccccccC
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADS-------------TLVEKVMTPN 195 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~-------------~~v~~~m~~~ 195 (346)
++.++++++++.++++.|.+++++++||++ +|+++|+++..|++ +....+..... ......|..+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLK-GLLLSPDDLLLYRTITFKELSEKFTDSDGVKSRP 80 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhh-hhhcCcchhhcccchhhhhhhhhcccccccccCC
Confidence 477899999999999999999999999998 78999999999997 44432221111 1123467788
Q ss_pred CeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 196 PECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 196 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
+.++++++++.++++.|.+++.+++||+|++|+++|+||..|+++
T Consensus 81 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 81 LITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred CeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 999999999999999999999999999999899999999999975
No 39
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.60 E-value=1.2e-14 Score=111.28 Aligned_cols=110 Identities=21% Similarity=0.286 Sum_probs=97.3
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 208 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~ 208 (346)
++.++++++++.++++.|.+.+++++||++ +++++|+++..|+. ++..........++.++|.+++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~ 80 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIR-EILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDA 80 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHH-HHHhcccccccEEHHHhccCCCcEEcCCCCHHHH
Confidence 467899999999999999999999999999 68999999999997 5554433222367889999999999999999999
Q ss_pred HHHhHhCCCceeEEEcC-CCcEEEEEehHHHHH
Q 019128 209 LHIMHDGKFLHLPVVDR-DGDVVDVVDVIHITH 240 (346)
Q Consensus 209 ~~~m~~~~~~~~~Vvd~-~g~~~Giit~~Di~~ 240 (346)
++.|...+.+++||+|+ +|+++|++|..|++.
T Consensus 81 ~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 81 LKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred HHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 99999999999999997 899999999999875
No 40
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.60 E-value=1.2e-14 Score=126.32 Aligned_cols=117 Identities=24% Similarity=0.258 Sum_probs=108.8
Q ss_pred CCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCe
Q 019128 119 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE 197 (346)
Q Consensus 119 ~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~ 197 (346)
..+.++|+|-.+..++.+++++.+-.++..+.+++++||+| ..+++|++|.+|+. +.. .+.++..+|+++|+
T Consensus 188 ~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~------~~~-~~t~ieKVMtknp~ 260 (432)
T COG4109 188 ITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVL------DKK-PSTTIEKVMTKNPI 260 (432)
T ss_pred eeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhh------cCC-CCccHHHHhccCCe
Confidence 35799999888899999999999999999999999999999 88999999999997 222 27899999999999
Q ss_pred eecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHH
Q 019128 198 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 242 (346)
Q Consensus 198 ~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~ 242 (346)
++.+.+++..+.+.|.-.++..+||+|++.+++|+||+.|+++..
T Consensus 261 tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~l 305 (432)
T COG4109 261 TVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSL 305 (432)
T ss_pred eecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHH
Confidence 999999999999999999999999999999999999999999874
No 41
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.60 E-value=1.4e-14 Score=113.07 Aligned_cols=110 Identities=32% Similarity=0.388 Sum_probs=95.9
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCc-----------cccccccccccCC
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPA-----------DSTLVEKVMTPNP 196 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~-~~~~Giit~~dll~~~~~~~~~~-----------~~~~v~~~m~~~~ 196 (346)
++.++.++.++.+++++|.+.+.+.+||++ + |+++|+++..|++ .++...... ...++.++|.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDIL-KYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV 80 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHH-HHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence 467889999999999999999999999998 5 8999999999997 554432211 1347888898899
Q ss_pred eeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 197 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 197 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
.++++++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 81 ITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred eEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 99999999999999999999999999998899999999999986
No 42
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.60 E-value=3e-14 Score=108.56 Aligned_cols=108 Identities=26% Similarity=0.341 Sum_probs=96.0
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 209 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~ 209 (346)
++.++++++++.++++.|.+.+++++||++++++.|+++.+|++ +....+.. ..++.++|..++.++++++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~-~~~~~~~~--~~~v~~~~~~~~~~v~~~~~~~~~~ 78 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIA-HAIARGLE--LAKVKDVMTKDVITIDEDEQLYDAI 78 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHH-HHHhcccc--ccCHHHHhcCCceEECCCCCHHHHH
Confidence 46789999999999999999999999999889999999999997 55444322 2578889988999999999999999
Q ss_pred HHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 210 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 210 ~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
+.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 79 ~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 79 RLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred HHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 9999999999999998899999999999974
No 43
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.60 E-value=1.7e-14 Score=110.51 Aligned_cols=109 Identities=20% Similarity=0.232 Sum_probs=95.2
Q ss_pred eeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHH
Q 019128 131 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 209 (346)
Q Consensus 131 ~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~ 209 (346)
+..+.+++++.++++.|.+.+.+++||++ +++++|+++.+|+++.... .......++.++|..++.++++++++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~-~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALE-SEELKDAKVREVMNSPVITIDANDSIAKAR 81 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhh-hhhhcCCcHHHhccCCceEECCCCcHHHHH
Confidence 67789999999999999999999999998 7899999999999733333 222224578899988999999999999999
Q ss_pred HHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 210 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 210 ~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
+.|.+++...+||+|++|+++|++|..|+++
T Consensus 82 ~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 82 WLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred HHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 9999999999999999999999999999874
No 44
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.60 E-value=2.8e-14 Score=108.76 Aligned_cols=106 Identities=33% Similarity=0.407 Sum_probs=95.0
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 208 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~ 208 (346)
++.++.++.++.++++.|.+++.+++||++ +|+++|+++.+|++ +....+ ..++.++|.+++.++++++++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~~~~----~~~~~~~~~~~~~~v~~~~~l~~~ 77 (110)
T cd04605 3 PVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDIS-KAVARD----KKSVEDIMTRNVITATPDEPIDVA 77 (110)
T ss_pred CCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHH-HHHhhC----ccCHHHhcCCCCeEECCCCcHHHH
Confidence 577899999999999999999999999998 78999999999997 544332 235888898899999999999999
Q ss_pred HHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 209 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 209 ~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
++.|.+.+.+.+||++++|++.|+||..|+.+
T Consensus 78 ~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 78 ARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred HHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 99999999999999999999999999999864
No 45
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.60 E-value=1.6e-14 Score=110.32 Aligned_cols=108 Identities=25% Similarity=0.368 Sum_probs=95.6
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 208 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~ 208 (346)
++.++.+++++.++++.|.+.+.+.+||++ +|+++|+++..|+. +....... ..++.++|..++.++++++++.++
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~-~~~~~~~~--~~~v~~~~~~~~~~i~~~~~~~~~ 78 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLI-RALAEGGP--DAPVRGVMRRDFPTVSPSATLDAV 78 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHH-HHHHhcCC--CCcHHHHhcCCCcEECCCCcHHHH
Confidence 467789999999999999988899999999 68999999999997 54443322 357889998999999999999999
Q ss_pred HHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 209 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 209 ~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
++.|.+++..++||+|++|+++|++|..|+.+
T Consensus 79 ~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 79 LRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred HHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 99999999999999998899999999999975
No 46
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.60 E-value=2.4e-14 Score=109.50 Aligned_cols=109 Identities=30% Similarity=0.511 Sum_probs=96.2
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 208 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~ 208 (346)
++.+++++.++.++++.|.+.+++++||++ +++++|+++..|++ +.+..+... ..++.++|..++.++++++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~-~~~~~~~~~-~~~v~~~~~~~~~~v~~~~~~~~~ 79 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIV-RAVAAGIDL-DTPVSEIMTRDLVTVDPDEPVAEA 79 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHH-HHHhccCCC-ccCHHHhccCCCEEECCCCcHHHH
Confidence 467889999999999999999999999999 68999999999997 554443322 457889998999999999999999
Q ss_pred HHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 209 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 209 ~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
++.|.+++...+||+|++|++.|++|..|+++
T Consensus 80 ~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 80 AKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred HHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 99999999999999998899999999999975
No 47
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.60 E-value=1.7e-14 Score=107.76 Aligned_cols=91 Identities=20% Similarity=0.282 Sum_probs=82.7
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCC
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 104 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 104 (346)
+++++++++++.+|.+.|.+++++++||+| + |+++|++|..|+.+..
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~------------------------------- 50 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL------------------------------- 50 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe-------------------------------
Confidence 468899999999999999999999999998 4 7999999999986530
Q ss_pred hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeeHHHHH
Q 019128 105 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDIL 173 (346)
Q Consensus 105 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~-~~~~Giit~~dll 173 (346)
.+.++.+++++.+|++.|.+++++++||++ + |+++|++|.+|++
T Consensus 51 -------------------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~ 96 (98)
T cd04618 51 -------------------------RLVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRIL 96 (98)
T ss_pred -------------------------eeEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhh
Confidence 167899999999999999999999999999 5 8999999999986
No 48
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.59 E-value=2.8e-14 Score=111.16 Aligned_cols=109 Identities=21% Similarity=0.335 Sum_probs=90.7
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCc---------cccccccccccCCee
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPA---------DSTLVEKVMTPNPEC 198 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~-~~~~Giit~~dll~~~~~~~~~~---------~~~~v~~~m~~~~~~ 198 (346)
++.++++++++.++++.|.+++++++||++ + ++++|+++..|++ ++...+... ....+..+|..++.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLV-EFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS 80 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHH-HHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence 467889999999999999999999999999 5 8999999999997 433221100 001223467788999
Q ss_pred ecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHH
Q 019128 199 ATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHIT 239 (346)
Q Consensus 199 v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~ 239 (346)
+++++++.++++.|.+++.+++||+|++|+++|+||..|+-
T Consensus 81 v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 81 INGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred eCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 99999999999999999999999999999999999999974
No 49
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.59 E-value=1.9e-14 Score=110.69 Aligned_cols=108 Identities=26% Similarity=0.258 Sum_probs=92.9
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCc-c----ccccccccccCCeeecCCC
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPA-D----STLVEKVMTPNPECATIDT 203 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~-~----~~~v~~~m~~~~~~v~~~~ 203 (346)
+++++++++++.++++.|.+.+++.+||++ +++++|+++.+|++ ++....... . ..++.++|.+++.++++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~ 80 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDIL-WKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDA 80 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHH-HHhhccCchhHHHHhCCcHHHHhcCCCceecCCC
Confidence 477899999999999999999999999999 78999999999997 544332211 1 3578899988999999999
Q ss_pred CHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 204 PIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 204 ~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
++.++++.|.+.+ .+||+|++|+++|+||..|+++
T Consensus 81 ~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 81 DIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred CHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 9999999998865 5999999999999999999985
No 50
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.59 E-value=3.2e-14 Score=108.63 Aligned_cols=107 Identities=21% Similarity=0.254 Sum_probs=93.5
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 207 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~ 207 (346)
++.+++++.++.++++.|.+.+.+.+||++ + ++++|+++..|++ +....+.. ..++..+| +++.++++++++.+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~-~~~~~~~~--~~~~~~~~-~~~~~v~~~~~l~~ 77 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLL-RALAEGEE--DLDLRDLL-RPPLFVPESTPLDD 77 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHH-HHHHcCCC--cCCHHHHh-cCCeecCCCCcHHH
Confidence 478899999999999999999999999998 6 8999999999997 55544322 14566666 67899999999999
Q ss_pred HHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 208 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 208 ~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
+++.|.+++.+++||+|++|+++|+||..|+++
T Consensus 78 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 78 LLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred HHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 999999999999999999999999999999975
No 51
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.59 E-value=4.3e-14 Score=107.88 Aligned_cols=109 Identities=35% Similarity=0.490 Sum_probs=95.7
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 209 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~ 209 (346)
++.+++++.++.++.+.|.+.+.+.+||+++++++|+++..|++..+...+.. ...++.++|..++.++++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~v~~~~~l~~~~ 80 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAEGLD-PDTPVSEVMTAPPITIPPDATVFEAL 80 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHhccCCC-ccCCHHHHhCCCCeEECCCCcHHHHH
Confidence 46789999999999999999999999999989999999999997444433322 24578899989999999999999999
Q ss_pred HHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 210 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 210 ~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
+.|.+.+..++||+++ |+++|++|..|+++
T Consensus 81 ~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 81 LLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred HHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 9999999999999997 99999999999974
No 52
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.58 E-value=2.8e-14 Score=110.91 Aligned_cols=110 Identities=33% Similarity=0.428 Sum_probs=96.1
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCC---------ccccccccccccCCeee
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP---------ADSTLVEKVMTPNPECA 199 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~---------~~~~~v~~~m~~~~~~v 199 (346)
++.++.+++++.++.+.|.+.+++.+||++ +|+++|+++..|++ +....... ....++.++|..++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v 80 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLL-RAALSSLSDNGEESLTKERDVPVAEVMKTDVLTV 80 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHH-HHhccccccccccccccccCcCHHHhhCCCCeEe
Confidence 467899999999999999999999999999 68999999999997 44432221 12457888998899999
Q ss_pred cCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 200 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 200 ~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
++++++.++++.|.+.+.+.+||+|++|+++|++|..|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 81 TPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred CCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 99999999999999999999999998899999999999985
No 53
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.58 E-value=2.6e-14 Score=113.39 Aligned_cols=109 Identities=23% Similarity=0.370 Sum_probs=94.5
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCc-----------------------cc
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPA-----------------------DS 185 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~-----------------------~~ 185 (346)
++.++.+++++.++++.|.+.+.+.+||+| +++++|+++..|++ +........ ..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLA-FAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVP 80 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHH-HHhhcccccccchhhhhhhhhccccccccccccc
Confidence 467789999999999999999999999999 69999999999998 444321111 13
Q ss_pred cccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 186 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 186 ~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
.++.++|.+++.++++++++.++++.|.+.+.+++||+++ |+++|+||..|+++
T Consensus 81 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 81 LVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred ccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 4788999888999999999999999999999999999996 99999999999986
No 54
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.58 E-value=5e-14 Score=107.58 Aligned_cols=109 Identities=20% Similarity=0.228 Sum_probs=94.8
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 209 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~ 209 (346)
++++++++.++.++++.|.+.+...++|++++++.|+++..|++ +....+......++.++|.+++.++++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~-~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 80 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLL-DAVLLDGLPSSTPVGEIATFPLITVDPDDFLFNAL 80 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHH-HHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHHHH
Confidence 36678999999999999999999999999878999999999997 44433322235678899988999999999999999
Q ss_pred HHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 210 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 210 ~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
+.|.+++...+||+|+ |+++|+||..|+++
T Consensus 81 ~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 81 LLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred HHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 9999999999999985 89999999999975
No 55
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.58 E-value=5.7e-14 Score=107.06 Aligned_cols=107 Identities=22% Similarity=0.377 Sum_probs=96.0
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 209 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~ 209 (346)
++.+++++.++.++.+.|.+.+++++||+++++++|+++..|+. +...... ...++.++|.+++.++++++++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~-~~~~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~~ 79 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVE-KALRHGL--GHAPVKDYMSTDVVTVPPDTPLSEVQ 79 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHH-HHHhccc--ccCcHHHHhcCCCEEECCCCcHHHHH
Confidence 57789999999999999999899999999989999999999997 5544332 25688999999999999999999999
Q ss_pred HHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 210 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 210 ~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
+.|.+++.+.+||+| +|+++|+||..|+++
T Consensus 80 ~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 80 ELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred HHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 999999999999999 899999999999875
No 56
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.58 E-value=2.3e-14 Score=110.06 Aligned_cols=108 Identities=19% Similarity=0.256 Sum_probs=91.5
Q ss_pred ceeEeCCCCcHHHHHHHHHHcC-CcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCcccccccccccc--CCeeecCCCCH
Q 019128 130 KVVTISPTDTVLMATKKMLELR-LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPI 205 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~-~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l 205 (346)
++.++++++++.++++.|.+++ .+.+||++ +++++|+++.+|++ ....... ...++.++|.. ++.++.+++++
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~-~~~~~~~--~~~~v~~~~~~~~~~~~v~~~~~l 78 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLR-AIPTSQW--AQTTVIQVMTPAAKLVTVLSEESL 78 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHH-HHHHhhc--cccchhhhhcccccceEECCCCcH
Confidence 4678999999999999997765 88999998 68999999999997 4433221 14578888864 36789999999
Q ss_pred HHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 206 VDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 206 ~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
.++++.|.+++.+++||+|++|+++|++|..|+++
T Consensus 79 ~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 79 AEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred HHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 99999999999999999998899999999999864
No 57
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.58 E-value=5.5e-14 Score=107.48 Aligned_cols=110 Identities=25% Similarity=0.391 Sum_probs=93.4
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 209 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~ 209 (346)
.+.++.+++++.++++.|.+.+...++|.++|+++|+++.+|+++.....+......++.++|..++.++++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~ 81 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEVR 81 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHHHHH
Confidence 46789999999999999988888888887789999999999997333322122224578999988889999999999999
Q ss_pred HHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 210 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 210 ~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
+.|.+++...+||+| +|+++|+||..|+++
T Consensus 82 ~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 82 RLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred HHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 999999999999998 599999999999975
No 58
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.58 E-value=4.3e-14 Score=108.33 Aligned_cols=110 Identities=28% Similarity=0.392 Sum_probs=96.9
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 208 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~ 208 (346)
++.++.++.++.++++.|.+.+.+.+||++ +++++|+++..++. +++.........++.++|.+++.++++++++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~-~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~ 81 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLR-RALEKGLDILTLPVADVMTRNPKTIDPDALAAEA 81 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHH-HHHhccCccccCCHHHhhccCCeEECCCCcHHHH
Confidence 466789999999999999888889999998 78999999999997 5555443333457999998899999999999999
Q ss_pred HHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 209 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 209 ~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
++.|..++...+||+|++|+++|+||..||++
T Consensus 82 ~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 82 LELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred HHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 99999999999999998899999999999975
No 59
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.58 E-value=7.2e-14 Score=106.80 Aligned_cols=110 Identities=30% Similarity=0.459 Sum_probs=94.5
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 209 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~ 209 (346)
++.++++++++.++++.|.+.+.+.+||+++++++|+++..|++..+..........++.++|.+++.++++++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 81 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNEAA 81 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHHHHH
Confidence 46778999999999999999999999999977999999999998434333222224578899988899999999999999
Q ss_pred HHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 210 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 210 ~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
+.|.+.+...+||+|++ +++|+||..|+++
T Consensus 82 ~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 82 KLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred HHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 99999999999999965 9999999999874
No 60
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.57 E-value=3.8e-14 Score=108.21 Aligned_cols=108 Identities=25% Similarity=0.293 Sum_probs=94.5
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 208 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~ 208 (346)
++.+++++.++.++++.|.+.+++++||++ +|+++|+++.+|++ .+...... ...++.++|.+++.++++++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~-~~~~~~~~-~~~~v~~~~~~~~~~v~~~~~l~~~ 79 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDIL-DLDLFESF-LEKKVFNIVSQDVFYVNEEDTIDEA 79 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhH-HHHhhccc-ccCcHHHHhcCCcEEEcCCCcHHHH
Confidence 467899999999999999999999999998 68999999999997 54432211 1357888998999999999999999
Q ss_pred HHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 209 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 209 ~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
++.|.+++...+||+|+ |+++|+||..|+++
T Consensus 80 ~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 80 LDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred HHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 99999999999999997 99999999999874
No 61
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.57 E-value=2.8e-14 Score=106.20 Aligned_cols=93 Identities=16% Similarity=0.262 Sum_probs=84.8
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 208 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~ 208 (346)
+++++.+++++.++++.|.+.+++.+||++ +|+++|+++.+|+. +.. .+.++++++++.++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~-~~~-----------------~~~~v~~~~~l~~a 63 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLI-AKS-----------------EVVTATKRTTVSEC 63 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHh-cCC-----------------CcEEecCCCCHHHH
Confidence 477899999999999999999999999998 78999999999997 210 17899999999999
Q ss_pred HHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 209 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 209 ~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
++.|.+++.+++||+|++|+++|+||.+|+++
T Consensus 64 ~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 64 AQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred HHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999999998899999999999985
No 62
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.57 E-value=6.3e-14 Score=106.49 Aligned_cols=105 Identities=25% Similarity=0.342 Sum_probs=94.1
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 208 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~ 208 (346)
++.+++++.++.++++.|.+.++.++||++ +++++|+++..|++ ..... ..++.++|.+.+.++++++++.++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~-~~~~~-----~~~v~~~~~~~~~~v~~~~~~~~~ 76 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLE-QAYKE-----AKSLEDIMLEDVFTVQPDASLRDV 76 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHH-HHhhc-----CCcHhHhhcCCceEECCCCcHHHH
Confidence 577899999999999999999999999999 68999999999997 43322 246888998899999999999999
Q ss_pred HHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 209 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 209 ~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
++.|.+.+..++||+|++|+++|++|.+|+++
T Consensus 77 ~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 77 LGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred HHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 99999999999999999999999999999874
No 63
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.57 E-value=5e-14 Score=106.57 Aligned_cols=103 Identities=23% Similarity=0.289 Sum_probs=92.2
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 208 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~ 208 (346)
++.+++++.++.++++.|.+.+.+.+||++ +|+++|+++..|++ +.. ..++.++|.+++.++++++++.++
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 73 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAA-RAS-------GGCCGDHAEPFKVTVSVDDDLRIV 73 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHH-Hhc-------ccchhhhcccCCEEECCCCCHHHH
Confidence 467899999999999999999999999998 79999999999997 431 124778888888899999999999
Q ss_pred HHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 209 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 209 ~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
++.|.+++...+||+|++|+++|+||..|+++
T Consensus 74 ~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 74 LSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred HHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999999999999999999999875
No 64
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.57 E-value=4.4e-14 Score=107.40 Aligned_cols=104 Identities=30% Similarity=0.284 Sum_probs=94.4
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 208 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~ 208 (346)
++.++.+++++.++.+.|.+.+.+++||++ +|+++|+++..|++ ... ...++.++|..++.++++++++.++
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~------~~~~v~~~~~~~~~~v~~~~~l~~~ 75 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVA-GKD------PDTTIEKVMTKNPITVNPKTSVASV 75 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHh-ccc------ccccHHHHhcCCCeEECCCCCHHHH
Confidence 578899999999999999999999999999 79999999999996 321 1457889998899999999999999
Q ss_pred HHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 209 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 209 ~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
++.|.+++...+||+|++|+++|++|..|+++
T Consensus 76 ~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 76 AHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred HHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 99999999999999999999999999999975
No 65
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.57 E-value=3.4e-14 Score=112.16 Aligned_cols=109 Identities=28% Similarity=0.356 Sum_probs=94.4
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccc--------------------ccc
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADS--------------------TLV 188 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~--------------------~~v 188 (346)
++.++.+++++.++++.|.+.+++++||++ +++++|+++..|++ ++......... .++
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLI-RKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKV 80 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHH-HHHhccCCcccccccccccccchHHHHHHcCCCH
Confidence 467899999999999999999999999999 78999999999997 44433221111 278
Q ss_pred ccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 189 EKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 189 ~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
.++|.+++.++++++++.++++.|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus 81 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 81 EEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred HHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 8889888999999999999999999999999999998 99999999999985
No 66
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.56 E-value=3.6e-14 Score=134.93 Aligned_cols=135 Identities=25% Similarity=0.304 Sum_probs=109.8
Q ss_pred CCCCCChh-hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeC----CEEEEEeeHHHHH
Q 019128 99 GTSISGPN-TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDIL 173 (346)
Q Consensus 99 g~~~~~~~-~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~----~~~~Giit~~dll 173 (346)
|.++++.+ +..++..+.-.-....+.|.. +++++++++++.+++++|.+++++.+||+++ ++++|++|.+|+.
T Consensus 75 glGvi~~~~~~e~~~~~v~kvk~~e~g~i~--dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~ 152 (495)
T PTZ00314 75 GIGVIHNNCSIEEQVEEVRKVKRFENGFIM--DPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDID 152 (495)
T ss_pred CeEEecCCCCHHHHHHHHhhcccccccccc--CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHh
Confidence 55555544 233333333333446667764 7889999999999999999999999999984 7999999999995
Q ss_pred HHHHhcCCCcccccccccccc--CCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128 174 MRVISQNLPADSTLVEKVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241 (346)
Q Consensus 174 ~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~ 241 (346)
.. . ....++.++|++ ++.++++++++.+++++|.+++.+.+||+|++|+++|+||++||++.
T Consensus 153 -~~-~----~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~ 216 (495)
T PTZ00314 153 -FV-K----DKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKN 216 (495)
T ss_pred -hc-c----cCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhc
Confidence 21 1 125689999987 88999999999999999999999999999999999999999999986
No 67
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.56 E-value=2.9e-14 Score=130.15 Aligned_cols=119 Identities=15% Similarity=0.154 Sum_probs=101.6
Q ss_pred CcccccccccC--CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhh
Q 019128 16 EETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE 92 (346)
Q Consensus 16 ~~~~v~dim~~--~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~ 92 (346)
..++|+|+|++ +++++++++|+.+|++.|.+++.+.+||+| +|+++|+||..|+.+....
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~----------------- 262 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDM----------------- 262 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhc-----------------
Confidence 67799999997 899999999999999999999888888888 7999999999998653100
Q ss_pred hhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHH
Q 019128 93 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDI 172 (346)
Q Consensus 93 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dl 172 (346)
+ ......++.++|.+ ++.++.+++++.++++.|.+++++.+||+++++++|++|.+|+
T Consensus 263 ------~--------------~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~lvGiit~~di 320 (326)
T PRK10892 263 ------G--------------IDLRQASIADVMTP--GGIRVRPGILAVDALNLMQSRHITSVLVADGDHLLGVLHMHDL 320 (326)
T ss_pred ------C--------------CCcccCCHHHhcCC--CCEEECCCCCHHHHHHHHHHCCCcEEEEeeCCEEEEEEEhHHh
Confidence 0 00112457788874 7889999999999999999999999999998999999999999
Q ss_pred H
Q 019128 173 L 173 (346)
Q Consensus 173 l 173 (346)
+
T Consensus 321 l 321 (326)
T PRK10892 321 L 321 (326)
T ss_pred H
Confidence 7
No 68
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.56 E-value=1.8e-13 Score=125.75 Aligned_cols=263 Identities=19% Similarity=0.221 Sum_probs=172.0
Q ss_pred CCCeeecCCccHHHHHHHHHhCCcceeeeee--CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCC
Q 019128 26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS 103 (346)
Q Consensus 26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd--~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 103 (346)
...+.++...++.+|+..+..++.+..|++| ..++.|+++..|++..+........
T Consensus 76 ~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~---------------------- 133 (381)
T KOG1764|consen 76 SKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKS---------------------- 133 (381)
T ss_pred ceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCC----------------------
Confidence 4578899999999999999999999999998 5789999999999887654332100
Q ss_pred ChhhHHHHHH--HHhCCCCcccc--ccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe--CCEEEEEeeHHHHHHHHH
Q 019128 104 GPNTFIETLR--ERMFRPSLSTI--IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVI 177 (346)
Q Consensus 104 ~~~~~~~~~~--~~~~~~~v~~i--m~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d--~~~~~Giit~~dll~~~~ 177 (346)
.......+. .......+..+ ....+.++.+.+..++.++...+.+.+++++||.| .+++..++|.+-++..+.
T Consensus 134 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~ 212 (381)
T KOG1764|consen 134 -SLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLW 212 (381)
T ss_pred -cHHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHH
Confidence 000000000 00111111111 01112348999999999999999999999999998 689999999999984333
Q ss_pred hcCCCccccccccccc-----------cCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHc
Q 019128 178 SQNLPADSTLVEKVMT-----------PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATV 246 (346)
Q Consensus 178 ~~~~~~~~~~v~~~m~-----------~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i 246 (346)
...... +...+|. .++..+.+++++.+|+++|...++..+||||+.|+.+|+++..|+...+...-
T Consensus 213 ~~~~~~---~~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~ 289 (381)
T KOG1764|consen 213 LNGRLL---PLPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGT 289 (381)
T ss_pred Hhhccc---ccHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCc
Confidence 322211 1222222 35889999999999999999999999999999999999999999998633211
Q ss_pred cCCCCCchHHHHHHHHHHHHHhhcCCCCC----CccccccccccccccCCCCCcccccCCCCCCCCCCceeEEEecCCCC
Q 019128 247 GNTAGSNNEAASTMMQKFWDSAMALSPND----DEEDNRSEGSLKFASEGADTARYLSYPSPSPGVPSAFAFKVQDNKGL 322 (346)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~T~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~d~~g~ 322 (346)
+....... -..+........++ ...+|++..+..+.. .+.+.+=|+|.+|.
T Consensus 290 --~~~~~~~~-----l~~~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~------------------~~vHRl~VVd~~~~ 344 (381)
T KOG1764|consen 290 --YNNLDLSC-----LSEALSHRPIRFEGVVTCRPTSTLAEVIDKLVA------------------HRVHRLWVVDEDGV 344 (381)
T ss_pred --cCccchhH-----HHHHhhhcccccCccEEEeecchHHHHHHHHHh------------------cCceEEEEEcCCCc
Confidence 11000000 00111111111000 011333333332211 12233559999999
Q ss_pred eEEEecCCCChHHHHHhhccc
Q 019128 323 MHRFTCGMLPFPNFIEVTNYE 343 (346)
Q Consensus 323 ~~~~~~g~~s~~~~~~~~~~~ 343 (346)
+ +|++|++||++.+-+.
T Consensus 345 l----~GvvSLsDil~~l~~~ 361 (381)
T KOG1764|consen 345 L----VGVISLSDILSYLVLT 361 (381)
T ss_pred E----EEEeeHHHHHHHHHhC
Confidence 9 9999999999987653
No 69
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.56 E-value=8.4e-14 Score=106.15 Aligned_cols=109 Identities=32% Similarity=0.359 Sum_probs=95.5
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 209 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~ 209 (346)
++.++.+++++.++++.|.+.+.+.+||+++++++|+++.+|++ +....+.. ...++.++|.+++.++.+++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~-~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIR-RVPAEGRE-ATVLVGDVMTRDPVTASPDETLRDAL 79 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHH-HHHhcCcc-cccCHHHhccCCCeEECCCCCHHHHH
Confidence 47789999999999999999999999999889999999999997 54433221 12367788989999999999999999
Q ss_pred HHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 210 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 210 ~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
+.|.+++.+++||+|++|+++|+||..|+++
T Consensus 80 ~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 80 KRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred HHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 9999999999999998899999999999975
No 70
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=4.9e-14 Score=110.35 Aligned_cols=111 Identities=20% Similarity=0.301 Sum_probs=91.0
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHH----HHhcC-CCccccccccccccCCeee----
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR----VISQN-LPADSTLVEKVMTPNPECA---- 199 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~----~~~~~-~~~~~~~v~~~m~~~~~~v---- 199 (346)
++.++.+++++.++++.|.+.+.+.+||++ +|+++|+++..|+... ....+ ......+++++|.+++..+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~ 81 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDL 81 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccH
Confidence 367899999999999999999999999998 7899999999999731 12221 1222457889997655433
Q ss_pred --cCCCCHHHHHHHhHhCCCceeEEEcCC-CcEEEEEehHHHHH
Q 019128 200 --TIDTPIVDALHIMHDGKFLHLPVVDRD-GDVVDVVDVIHITH 240 (346)
Q Consensus 200 --~~~~~l~~~~~~m~~~~~~~~~Vvd~~-g~~~Giit~~Di~~ 240 (346)
.+++++.++++.|.+++.+++||+|++ |+++|+||..|+++
T Consensus 82 ~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 82 EELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred HHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 368999999999999999999999986 89999999999985
No 71
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.56 E-value=4.5e-14 Score=133.48 Aligned_cols=115 Identities=29% Similarity=0.358 Sum_probs=102.5
Q ss_pred CccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C---CEEEEEeeHHHHHHHHHhcCCCccccccccccc-c
Q 019128 120 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E---NKPRGILTSKDILMRVISQNLPADSTLVEKVMT-P 194 (346)
Q Consensus 120 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~---~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~-~ 194 (346)
...+.|.+ ++++++++.++.++++.|.+++++++||++ + ++++|++|.+|++ ... . ...++.++|. .
T Consensus 81 ~~~~~~~~--~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~-~~~--~---~~~~V~dvm~~~ 152 (450)
T TIGR01302 81 RAENGIIS--DPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIR-FVK--D---KGKPVSEVMTRE 152 (450)
T ss_pred cccCceec--CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHh-hhh--c---CCCCHHHhhCCC
Confidence 46677764 789999999999999999999999999999 4 6999999999996 322 1 2468999998 4
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHH
Q 019128 195 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 242 (346)
Q Consensus 195 ~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~ 242 (346)
+++++++++++.++++.|.+++.+.+||+|++|+++|+||.+||++..
T Consensus 153 ~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 153 EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR 200 (450)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence 999999999999999999999999999999999999999999999874
No 72
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=3.5e-14 Score=108.88 Aligned_cols=110 Identities=25% Similarity=0.346 Sum_probs=94.5
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcC-CCccccccccccccCCeeecCCCCHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-LPADSTLVEKVMTPNPECATIDTPIVD 207 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~-~~~~~~~v~~~m~~~~~~v~~~~~l~~ 207 (346)
++.+++++.++.++++.|.+.+.+.+||++ +++++|+++..|+++.+.... ......++.++|.+++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 81 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIVD 81 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcHHH
Confidence 467899999999999999998999999998 789999999999973333221 111245788999889999999999999
Q ss_pred HHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 208 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 208 ~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
+++.|.+++...+||+|+ |+++|+||..|+++
T Consensus 82 ~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 82 LAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred HHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 999999999999999997 99999999999985
No 73
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.56 E-value=8.1e-14 Score=131.53 Aligned_cols=160 Identities=15% Similarity=0.147 Sum_probs=121.2
Q ss_pred CCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhh
Q 019128 15 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 93 (346)
Q Consensus 15 ~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~ 93 (346)
++..+++++|.++++++++++++.+|++.|.+++++.+||+| +++++|+||.+|+...
T Consensus 86 l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~--------------------- 144 (479)
T PRK07807 86 VAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV--------------------- 144 (479)
T ss_pred HhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC---------------------
Confidence 456788999999999999999999999999999999999998 7899999999997321
Q ss_pred hhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHH
Q 019128 94 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI 172 (346)
Q Consensus 94 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dl 172 (346)
-...++.++|++ +++++++++++.++++.|.+++...+||+| +++++|+||.+|+
T Consensus 145 ----------------------~~~~~V~diMt~--~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DI 200 (479)
T PRK07807 145 ----------------------DRFTQVRDVMST--DLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGA 200 (479)
T ss_pred ----------------------ccCCCHHHhccC--CceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHH
Confidence 001347777864 799999999999999999999999999999 7999999999999
Q ss_pred HHHHHhcCCCccccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcC
Q 019128 173 LMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDR 225 (346)
Q Consensus 173 l~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~ 225 (346)
+ +....... ...-...+...... ......+....|.+.+... +++|-
T Consensus 201 l-~~~~~~~~--~~~~g~l~V~aav~--~~~~~~~~a~~Lv~aGvd~-i~~D~ 247 (479)
T PRK07807 201 L-RATIYTPA--VDAAGRLRVAAAVG--INGDVAAKARALLEAGVDV-LVVDT 247 (479)
T ss_pred H-HHhhCCch--hhhhhccchHhhhc--cChhHHHHHHHHHHhCCCE-EEEec
Confidence 8 44332210 00000111111111 2234667888888888876 55663
No 74
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.56 E-value=7.3e-14 Score=106.25 Aligned_cols=108 Identities=24% Similarity=0.313 Sum_probs=92.0
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 209 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~ 209 (346)
++.++.+++++.++.+.|.+.+++++||+++++++|+++..|+. +...........++.++|.+++.++++++++.++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 80 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLL-DALIEGKAKFSLPVREVMGEPLPTVDPDAPIEELS 80 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHH-HHHhccccccCcCHHHHhcCCCceeCCCCcHHHHH
Confidence 46789999999999999999999999999989999999999997 55433322223578889988899999999999999
Q ss_pred HHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 210 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 210 ~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
+.|.+ . ..+||+|++|+++|+||.+|+++
T Consensus 81 ~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 81 ELLDR-G-NVAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred HHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence 99988 3 34789998999999999999985
No 75
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.55 E-value=9.7e-14 Score=132.57 Aligned_cols=172 Identities=21% Similarity=0.261 Sum_probs=131.0
Q ss_pred cccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhc
Q 019128 19 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 97 (346)
Q Consensus 19 ~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (346)
.++++|.++++++++++++.+++++|.+++++.+||+| +++++|+|+.+|+....
T Consensus 88 ~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~------------------------ 143 (486)
T PRK05567 88 RSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFET------------------------ 143 (486)
T ss_pred hhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcc------------------------
Confidence 56789999999999999999999999999999999999 79999999999985310
Q ss_pred cCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHH
Q 019128 98 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV 176 (346)
Q Consensus 98 ~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~ 176 (346)
....++.++|.+ .+++++++++++.++++.|.+++++.+||++ +++++|++|.+|+++..
T Consensus 144 ------------------~~~~~V~dim~~-~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 144 ------------------DLSQPVSEVMTK-ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAE 204 (486)
T ss_pred ------------------cCCCcHHHHcCC-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhh
Confidence 012346667752 4688999999999999999999999999999 89999999999998443
Q ss_pred HhcCC--C-ccccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcC-CCcEEEEEehHHHHHH
Q 019128 177 ISQNL--P-ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDR-DGDVVDVVDVIHITHA 241 (346)
Q Consensus 177 ~~~~~--~-~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~~~Giit~~Di~~~ 241 (346)
..... + .....+...|..+ + .-.+..+.|.+.++..+ |+|. +|+..|+++..+.++.
T Consensus 205 ~~p~a~~d~~g~l~V~aai~~~-----~--~~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 205 EFPNACKDEQGRLRVGAAVGVG-----A--DNEERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred hCCCcccccCCCEEEEeecccC-----c--chHHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHHh
Confidence 22111 0 0122344444332 2 12788888889999855 5654 6888887776666654
No 76
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.55 E-value=6.5e-14 Score=107.10 Aligned_cols=106 Identities=15% Similarity=0.105 Sum_probs=89.3
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
++.++++++++.+|++.|.+++.+.+||+| +|+++|+++..|+.+...
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~------------------------------- 50 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGP------------------------------- 50 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhcc-------------------------------
Confidence 467899999999999999999999999998 789999999999865200
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
+.....++.++|.. ++.++.+++++.++++.|.+++.+.+||++ +|+++|++|.+|++
T Consensus 51 --------~~~~~~~v~~~~~~--~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~ 109 (111)
T cd04603 51 --------NDYETLKVCEVYIV--PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELL 109 (111)
T ss_pred --------ccccccChhheeec--CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhh
Confidence 00112346677753 678899999999999999999999999999 69999999999996
No 77
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.55 E-value=1.1e-13 Score=107.17 Aligned_cols=110 Identities=25% Similarity=0.361 Sum_probs=95.4
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCC----------ccccccccccccCCeee
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLP----------ADSTLVEKVMTPNPECA 199 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~----------~~~~~v~~~m~~~~~~v 199 (346)
++.+++++.++.++++.|.+.++..+||+++|+++|+++..|++ ........ ....++.++|.+++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLK-LASPSKATTLDIWELYYLLSKIKVSDIMTRDPITV 80 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecCCeEEEEEeHHHHH-HhhhcccccccchhhhhhhcccCHHHhccCCCeEe
Confidence 46789999999999999999999999999989999999999997 44332110 01356788998899999
Q ss_pred cCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 200 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 200 ~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
++++++.+++..|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 81 SPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred CCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 99999999999999999999999998899999999999985
No 78
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=4.9e-14 Score=109.47 Aligned_cols=111 Identities=28% Similarity=0.334 Sum_probs=94.9
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcC---CC-----ccccccccccccCCeeec
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN---LP-----ADSTLVEKVMTPNPECAT 200 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~---~~-----~~~~~v~~~m~~~~~~v~ 200 (346)
++.++.+++++.++++.|.+.+++++||++ +|+++|+++..|+++...... .. ....++.++|.+++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSVT 81 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCeeEC
Confidence 477899999999999999999999999999 799999999999973221110 00 124567888988999999
Q ss_pred CCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 201 IDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 201 ~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
+++++.++++.|.+.+.+.+||+|++|+++|++|..|+++
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 82 PDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred CCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 9999999999999999999999999999999999999985
No 79
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.55 E-value=4e-14 Score=112.24 Aligned_cols=109 Identities=28% Similarity=0.408 Sum_probs=94.6
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCC----------------------Ccccc
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL----------------------PADST 186 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~----------------------~~~~~ 186 (346)
++.++.+++++.++++.|.+.++.++||++ +++++|+++..|++ +...... .....
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLL-RRAELGTERRRARWLDLLAGAEELAAAFVRSHGR 81 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHH-HHhcccCcchhhhHHHHhcchHHHHHHHHHhcCC
Confidence 578899999999999999999999999999 78999999999997 3322110 01235
Q ss_pred ccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 187 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 187 ~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
++.++|.+++.++++++++.++++.|.+.+.+.+||+| +|+++|+||..|+++
T Consensus 82 ~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 82 KVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred CHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 68889988999999999999999999999999999999 899999999999875
No 80
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=7.9e-14 Score=109.39 Aligned_cols=110 Identities=23% Similarity=0.233 Sum_probs=93.4
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcC-------------CCccccccccccccC
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-------------LPADSTLVEKVMTPN 195 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~-------------~~~~~~~v~~~m~~~ 195 (346)
++.++.++.++.++++.|.+.+.+.+||++ +++++|++|..|++ .++... ......++.++|.++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIV-DFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSP 80 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHH-HHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCC
Confidence 467789999999999999999999999999 78999999999997 433211 001134688999899
Q ss_pred CeeecCCCCHHHHHHHhHhCCCceeEEEc--CCCcEEEEEehHHHHH
Q 019128 196 PECATIDTPIVDALHIMHDGKFLHLPVVD--RDGDVVDVVDVIHITH 240 (346)
Q Consensus 196 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd--~~g~~~Giit~~Di~~ 240 (346)
++++++++++.+++..|.+.+.+.+||++ ++|+++|+||..|+++
T Consensus 81 ~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 81 VITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred CceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 99999999999999999999999999984 4699999999999985
No 81
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.54 E-value=9.6e-14 Score=107.67 Aligned_cols=109 Identities=31% Similarity=0.371 Sum_probs=94.3
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCC----------CccccccccccccCCeee
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL----------PADSTLVEKVMTPNPECA 199 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~----------~~~~~~v~~~m~~~~~~v 199 (346)
++.++.+++++.++++.|.+.+.+++||+++|+++|+++..|+. +...... .....++.++|..++.++
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIA-DALRSFRPLVRDRHQERRIRNLPVSDIMTRPVITI 80 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHH-HhhhhhhhcccchhhhhhhhccCHHHHccCCceEE
Confidence 46789999999999999999999999999999999999999997 4332111 112357888898899999
Q ss_pred cCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 200 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 200 ~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
++++++.++++.|.+.+.+.+||+|+ |+++|+||..|+++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 81 EPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred CCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 99999999999999999999999997 99999999999985
No 82
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53 E-value=1e-13 Score=107.76 Aligned_cols=110 Identities=23% Similarity=0.400 Sum_probs=95.2
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCC---C-------ccccccccccccCCeee
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL---P-------ADSTLVEKVMTPNPECA 199 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~---~-------~~~~~v~~~m~~~~~~v 199 (346)
++.+++++.++.++++.|.+.+++++||+++|+++|+++..|++ +...... . ....++.++|.+++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYL-KAISPFLGTAGETEKDLATLNRRAHQIMTRDPITV 80 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHH-HHHHHHhccccchHHHHHHHHhHHHHhhcCCCeee
Confidence 47789999999999999999999999999989999999999997 4332210 0 01246888898999999
Q ss_pred cCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 200 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 200 ~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
++++++.++++.|.+++...+||+|++|+++|++|..|+++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 81 SPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred CCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 99999999999999999999999998899999999999986
No 83
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.53 E-value=2.3e-13 Score=103.05 Aligned_cols=104 Identities=27% Similarity=0.388 Sum_probs=93.6
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 209 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~ 209 (346)
++++++.+.++.++++.|.+.+.+.+||+++++++|+++..|++ .. . ...++.++|..++.++++++++.+++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~-~~-----~-~~~~~~~~~~~~~~~v~~~~~l~~~~ 75 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLL-GK-----D-PDETVEEIMSKDLVVAVPEMDIMDAA 75 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhh-cc-----C-ccccHHHhCCCCCeEECCCCCHHHHH
Confidence 57889999999999999998888899999889999999999996 31 1 14578899988899999999999999
Q ss_pred HHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 210 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 210 ~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
+.|.+++...+||+|++|+++|+|+..|+++
T Consensus 76 ~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 76 RVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred HHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 9999999999999999999999999999985
No 84
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.53 E-value=2.2e-13 Score=102.79 Aligned_cols=103 Identities=27% Similarity=0.379 Sum_probs=92.4
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 209 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~ 209 (346)
++.++++++++.++++.|.+++.+.+||+++++++|+++..|++ +.. ...++.++|.+++.++++++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~-~~~------~~~~~~~~~~~~~~~v~~~~~l~~~~ 74 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVR-RAH------PNRLVADAMTREVVTISPEASLLEAK 74 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhh-ccc------ccCCHHHHccCCCEEECCCCCHHHHH
Confidence 46778999999999999999999999999989999999999997 321 13468889988999999999999999
Q ss_pred HHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 210 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 210 ~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
+.|.+++..++||+|+ |+++|+||..|++.
T Consensus 75 ~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~ 104 (105)
T cd04599 75 RLMEEKKIERLPVLRE-RKLVGIITKGTIAL 104 (105)
T ss_pred HHHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence 9999999999999997 99999999999873
No 85
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.53 E-value=1.4e-13 Score=130.68 Aligned_cols=107 Identities=27% Similarity=0.287 Sum_probs=95.4
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeC----CEEEEEeeHHHHHHHHHhcCCCcccccccccccc--CCeeecCCC
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDT 203 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~----~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~ 203 (346)
.++++++++++.++++.|.+++++.+||+|+ ++++|+||..|+. .. . .....+++++|++ +++++++++
T Consensus 106 ~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr-~~-~---~~~~~~V~dIMt~~~~~itv~~d~ 180 (502)
T PRK07107 106 SDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYR-IS-R---MSLDTKVKDFMTPFEKLVTANEGT 180 (502)
T ss_pred CCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhh-cc-c---cCCCCCHHHHhCCCCCeEEECCCC
Confidence 3568999999999999999999999999984 7999999999994 32 1 1235789999986 778999999
Q ss_pred CHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128 204 PIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241 (346)
Q Consensus 204 ~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~ 241 (346)
++.+|++.|.++++..+||+|++|+++|+||..|+++.
T Consensus 181 ~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 181 TLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH 218 (502)
T ss_pred cHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence 99999999999999999999999999999999999985
No 86
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.53 E-value=1.7e-13 Score=105.34 Aligned_cols=109 Identities=15% Similarity=0.168 Sum_probs=89.8
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
.+.++++++++.+|++.|.+++...+||+| +|+++|+++..|+.+.....
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~----------------------------- 52 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRC----------------------------- 52 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhc-----------------------------
Confidence 467889999999999999999999999998 78999999999987642100
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
.......++.++|. .+++++.+++++.++++.|.+++...+||++ +|+++|++|.+|++
T Consensus 53 -------~~~~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~ 112 (114)
T cd04619 53 -------GGPGCTAPVENVMT--RAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDAL 112 (114)
T ss_pred -------CCCcccCCHHHHhc--CCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhc
Confidence 00011234556665 3688999999999999999999999999999 68999999999986
No 87
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.53 E-value=6.4e-14 Score=127.72 Aligned_cols=117 Identities=12% Similarity=0.169 Sum_probs=100.7
Q ss_pred cccccccccCC--CeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhh
Q 019128 17 ETPVSKVMTRN--PTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 93 (346)
Q Consensus 17 ~~~v~dim~~~--~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~ 93 (346)
..+|+++|.++ ++++++++|+.+|++.|.+++...+||+| +|+++|+|+..|+.+.+..
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~------------------ 257 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVG------------------ 257 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhC------------------
Confidence 57899999988 99999999999999999999999999999 7999999999998653210
Q ss_pred hhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHH
Q 019128 94 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI 172 (346)
Q Consensus 94 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dl 172 (346)
......++.++|.+ ++.++.+++++.++++.|.+++...+||++ +|+++|+||.+|+
T Consensus 258 --------------------~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di 315 (321)
T PRK11543 258 --------------------GGALTTPVNEAMTR--GGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDF 315 (321)
T ss_pred --------------------CCCcCCcHHHhcCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHH
Confidence 00112346777864 788899999999999999999999999999 7899999999999
Q ss_pred H
Q 019128 173 L 173 (346)
Q Consensus 173 l 173 (346)
+
T Consensus 316 ~ 316 (321)
T PRK11543 316 Y 316 (321)
T ss_pred H
Confidence 7
No 88
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.52 E-value=2.5e-13 Score=104.30 Aligned_cols=105 Identities=28% Similarity=0.340 Sum_probs=91.4
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeC----CEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecC--CC
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATI--DT 203 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~----~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~--~~ 203 (346)
++.++.+++++.++++.|.+.+..++||+|+ |+++|+++.+|++ .... . ..+++++|..++.++.. ++
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~-~~~~-~----~~~v~~~~~~~~~~~~~~~~~ 76 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDID-FLTD-S----ETPLSEVMTPREVLVVAPTGI 76 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhh-hhhc-c----CCCHHHhcCCCceEEECCCCC
Confidence 4678899999999999999889999999983 7999999999986 3221 1 34688999887888866 99
Q ss_pred CHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 204 PIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 204 ~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
++.++++.|.+++.+.+||+|++|+++|+||..|+++
T Consensus 77 ~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 77 TLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred CHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 9999999999999999999999999999999999875
No 89
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.52 E-value=2e-13 Score=101.55 Aligned_cols=91 Identities=25% Similarity=0.345 Sum_probs=82.9
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
+++++++++++.+|++.|.+++++.+||+| +|+++|+++..|+...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~--------------------------------- 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK--------------------------------- 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC---------------------------------
Confidence 578899999999999999999999999998 7999999999998542
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
..+.++++++++.++++.|.+++.+++||++ +|+++|++|.+|++
T Consensus 49 -----------------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~ 94 (96)
T cd04614 49 -----------------------SEVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLL 94 (96)
T ss_pred -----------------------CCcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhh
Confidence 1267899999999999999999999999999 58999999999996
No 90
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.52 E-value=1.5e-13 Score=134.48 Aligned_cols=125 Identities=22% Similarity=0.235 Sum_probs=107.1
Q ss_pred HhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccc
Q 019128 115 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT 193 (346)
Q Consensus 115 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~ 193 (346)
.+...+++++|.+ ++.++++++++.++.+.|.+++.+.+||+| +++++|+++.+|+.+.+... ......++.++|.
T Consensus 443 ~L~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~-~~~~~~~v~dim~ 519 (574)
T PRK01862 443 RLRTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDK-RDTTDKTAADYAH 519 (574)
T ss_pred HHhhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcc-cccccchHHHhcc
Confidence 3455678999975 678899999999999999999999999999 78999999999997433332 2222457899999
Q ss_pred cCCeeecCCCCHHHHHHHhHhCCCceeEEEcCC--CcEEEEEehHHHHHHH
Q 019128 194 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRD--GDVVDVVDVIHITHAA 242 (346)
Q Consensus 194 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~--g~~~Giit~~Di~~~~ 242 (346)
+++.++++++++.++++.|.+++.+.+||+|++ |+++|+||+.|++++.
T Consensus 520 ~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l 570 (574)
T PRK01862 520 TPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAY 570 (574)
T ss_pred CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHH
Confidence 999999999999999999999999999999976 4899999999999874
No 91
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.51 E-value=2.5e-13 Score=103.37 Aligned_cols=105 Identities=32% Similarity=0.443 Sum_probs=91.8
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecC-CCCHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATI-DTPIVD 207 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~-~~~l~~ 207 (346)
++.++.+++++.++++.|.+.+.+.+||++ +|+++|+++.++++ ... ....++.++|...+.++.+ ++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~-----~~~~~v~~~~~~~~~~~~~~~~~l~~ 76 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLR-FET-----DLDKPVSEVMTPENLLTTVEGTSLEE 76 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHee-ecc-----cCCCCHHHhcccCceEEecCCCCHHH
Confidence 577899999999999999999999999999 68999999999985 321 1245788999777777677 999999
Q ss_pred HHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 208 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 208 ~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
+++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 77 ~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 77 ALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred HHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 999999999999999999999999999999975
No 92
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.51 E-value=2.4e-13 Score=104.35 Aligned_cols=109 Identities=19% Similarity=0.276 Sum_probs=88.9
Q ss_pred CCCeeecCCccHHHHHHHHHhCC-cceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCC
Q 019128 26 RNPTFVLSDTLAVEALQKMVQGK-FRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS 103 (346)
Q Consensus 26 ~~~i~v~~~~~l~ea~~~m~~~~-~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 103 (346)
+++.++++++++.+|++.|.+++ .+.+||+| +|+++|+++..|++.....
T Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~---------------------------- 52 (114)
T cd04801 1 RDFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTS---------------------------- 52 (114)
T ss_pred CCcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHh----------------------------
Confidence 35778999999999999997775 89999998 6999999999998764210
Q ss_pred ChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 104 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 104 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
.....++.++|.+...++++.+++++.++++.|.+++.+.+||++ +++++|++|.+|++
T Consensus 53 -----------~~~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~ 112 (114)
T cd04801 53 -----------QWAQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLL 112 (114)
T ss_pred -----------hccccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEecccee
Confidence 001234566665433466899999999999999999999999999 58999999999986
No 93
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.51 E-value=1.3e-13 Score=106.85 Aligned_cols=116 Identities=23% Similarity=0.287 Sum_probs=88.7
Q ss_pred CCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCC
Q 019128 26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 104 (346)
Q Consensus 26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 104 (346)
++++++++++++.+|++.|.+++++.+||++ +|+++|+++.+|++.....+...
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~------------------------- 55 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYN------------------------- 55 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccc-------------------------
Confidence 4678999999999999999999999999998 79999999999998642111000
Q ss_pred hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 105 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 105 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
.....+...+ ....+|. .++.++++++++.++++.|.+++.+.+||++ +|+++|++|..|++
T Consensus 56 --~~~~~~~~~~---~~~~~~~--~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~ 118 (120)
T cd04641 56 --NLDLTVGEAL---ERRSQDF--EGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDIL 118 (120)
T ss_pred --cccCCHHHHH---hhcccCC--CCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhh
Confidence 0000011111 0122332 3578999999999999999999999999999 68999999999986
No 94
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.51 E-value=8.4e-13 Score=124.57 Aligned_cols=115 Identities=13% Similarity=0.074 Sum_probs=101.4
Q ss_pred CCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 019128 15 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV 94 (346)
Q Consensus 15 ~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~ 94 (346)
++..++.++|.++++++.+++++.+|+++|.+++++.+||+|+++++|+||.+|+...
T Consensus 85 v~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~~---------------------- 142 (475)
T TIGR01303 85 VAFVKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLLGV---------------------- 142 (475)
T ss_pred HhhcchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhcC----------------------
Confidence 4578889999999999999999999999999999999999998899999999997321
Q ss_pred hhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 95 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 95 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
....++.++|++ +++++++++++.+++++|.+++++.+||++ +++++|+||.+|++
T Consensus 143 ---------------------~~~~~V~dIMt~--~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl 199 (475)
T TIGR01303 143 ---------------------DRFTQVRDIMST--DLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGAL 199 (475)
T ss_pred ---------------------CCCCCHHHHccC--CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHH
Confidence 011347777874 789999999999999999999999999999 89999999999998
Q ss_pred H
Q 019128 174 M 174 (346)
Q Consensus 174 ~ 174 (346)
+
T Consensus 200 ~ 200 (475)
T TIGR01303 200 R 200 (475)
T ss_pred H
Confidence 3
No 95
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.51 E-value=5.3e-13 Score=102.70 Aligned_cols=109 Identities=34% Similarity=0.444 Sum_probs=96.1
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 208 (346)
Q Consensus 129 ~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~ 208 (346)
+.++++.++.++.++...|.++++..+||++.++++|++|.+|++ +....+... ..++.++|++++.++.++.++.++
T Consensus 7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~-~~~~~~~~~-~~~v~~v~~~~~~~~~~~~~~~~~ 84 (117)
T COG0517 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDIL-RALAAGGKR-LLPVKEVMTKPVVTVDPDTPLEEA 84 (117)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHH-HHHhccCCc-cccHHHhccCCcEEECCCCCHHHH
Confidence 478999999999999999999999999999977999999999998 444433221 126899998899999999999999
Q ss_pred HHHhHh-CCCceeEEEcCCC-cEEEEEehHHHH
Q 019128 209 LHIMHD-GKFLHLPVVDRDG-DVVDVVDVIHIT 239 (346)
Q Consensus 209 ~~~m~~-~~~~~~~Vvd~~g-~~~Giit~~Di~ 239 (346)
.+.|.. ++++.+||+|+++ +++|++|..|++
T Consensus 85 ~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 85 LELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred HHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 999999 7999999999886 999999999973
No 96
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.50 E-value=3.1e-13 Score=104.48 Aligned_cols=110 Identities=22% Similarity=0.338 Sum_probs=89.8
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
++.++++++++.+|++.|.++++..+||+| +|+++|+++..|+++.....
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~----------------------------- 52 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGG----------------------------- 52 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcC-----------------------------
Confidence 578899999999999999999999999998 69999999999987753210
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C---CEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E---NKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~---~~~~Giit~~dll 173 (346)
......++.++|.....+.++++++++.++++.|.+++++.+||++ + ++++|++|..|++
T Consensus 53 --------~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~ 116 (118)
T cd04617 53 --------ADLQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNIT 116 (118)
T ss_pred --------CCccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhhee
Confidence 0011233556665213578999999999999999999999999998 4 6999999999986
No 97
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.50 E-value=6.6e-13 Score=100.86 Aligned_cols=110 Identities=34% Similarity=0.440 Sum_probs=94.7
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 208 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~ 208 (346)
++.+++++.++.++++.|.+.+.+.+||++ +++++|+++.+|++ .............+.++|..++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLL-RALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEEA 80 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHH-HHHHhccCCccccHHHHhcCCceecCCCcCHHHH
Confidence 467789999999999999999999999999 68999999999998 4444332221223677888899999999999999
Q ss_pred HHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 209 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 209 ~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
++.|...+.+.+||+|++|+++|+++..|+++
T Consensus 81 ~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 81 AELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 99999999999999999999999999999875
No 98
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.49 E-value=3.3e-13 Score=128.94 Aligned_cols=115 Identities=27% Similarity=0.345 Sum_probs=103.0
Q ss_pred CccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccc-cCCe
Q 019128 120 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT-PNPE 197 (346)
Q Consensus 120 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~-~~~~ 197 (346)
.+.++|. .+++++++++++.++++.|.+++++++||++ +++++|++|.+|+. ... . ...++.++|. ++++
T Consensus 88 ~~~dim~--~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~-~~~--~---~~~~V~dim~~~~~v 159 (486)
T PRK05567 88 RSESGVV--TDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVR-FET--D---LSQPVSEVMTKERLV 159 (486)
T ss_pred hhhhccc--CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhh-hcc--c---CCCcHHHHcCCCCCE
Confidence 4677787 4899999999999999999999999999999 89999999999995 321 1 2457899998 7899
Q ss_pred eecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHH
Q 019128 198 CATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 242 (346)
Q Consensus 198 ~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~ 242 (346)
++++++++.++++.|.+++.+.+||+|++|+++|+||.+||++..
T Consensus 160 ~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 160 TVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAE 204 (486)
T ss_pred EECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhh
Confidence 999999999999999999999999999999999999999999864
No 99
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.49 E-value=3.6e-13 Score=102.48 Aligned_cols=101 Identities=21% Similarity=0.276 Sum_probs=88.8
Q ss_pred eCCCCcHHHHHHHHHHcC-----CcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHH
Q 019128 134 ISPTDTVLMATKKMLELR-----LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 207 (346)
Q Consensus 134 v~~~~~l~~~~~~m~~~~-----~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~ 207 (346)
+.+++++.++++.|.+++ +..+||++ +++++|+++.+|++ +. . ...++.++|.+++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~-~~-----~-~~~~v~~~~~~~~~~i~~~~~~~~ 74 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLL-LA-----D-PDTPVSDIMDTDVISVSADDDQEE 74 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHh-cC-----C-CcchHHHHhCCCCeEEcCCCCHHH
Confidence 567899999999998877 46889998 78999999999997 31 1 145788999888999999999999
Q ss_pred HHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128 208 ALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241 (346)
Q Consensus 208 ~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~ 241 (346)
+++.|...+...+||+|++|+++|+||..|++++
T Consensus 75 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 75 VARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred HHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 9999999999999999999999999999999875
No 100
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.49 E-value=5.1e-13 Score=100.78 Aligned_cols=100 Identities=26% Similarity=0.241 Sum_probs=89.5
Q ss_pred eEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHHHH
Q 019128 132 VTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHI 211 (346)
Q Consensus 132 ~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~ 211 (346)
++++++.++.++++.|.+.+.+++||+++++++|+++.+|++ ... ..++.++|.+++.+++++.++.++++.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~-~~~-------~~~~~~~~~~~~~~v~~~~~l~~a~~~ 75 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKDIE-NAT-------YGDVVDYIVRGIPYVRLTSTAEEAWEV 75 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHh-hhc-------ccchhhhhhcCCcEEcCCCCHHHHHHH
Confidence 468999999999999999999999999889999999999997 321 235777888889999999999999999
Q ss_pred hHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 212 MHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 212 m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
|.+++...+||+| +|+++|+||..|+++
T Consensus 76 ~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 76 MMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred HHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 9999999999998 699999999999875
No 101
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.49 E-value=4.2e-13 Score=127.69 Aligned_cols=108 Identities=28% Similarity=0.308 Sum_probs=97.5
Q ss_pred CceeEeCCCCcHHHHHHHHHHcCCcEEEEEeC----CEEEEEeeHHHHHHHHHhcCCCccccccccccccC--CeeecCC
Q 019128 129 SKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN--PECATID 202 (346)
Q Consensus 129 ~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~----~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~--~~~v~~~ 202 (346)
++++++++++++.++++.|.+++++.+||+++ ++++|+||.+|+. ... ....++.++|+++ +.+++++
T Consensus 108 ~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~-~v~-----~~~~~V~eIMt~~~~lvtv~~~ 181 (505)
T PLN02274 108 SDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWD-FVN-----DRETKLSEVMTSDDDLVTAPAG 181 (505)
T ss_pred CCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHh-hcc-----ccCCcHHHHhccCCCcEEECCC
Confidence 37899999999999999999999999999984 7999999999995 322 1256899999876 7899999
Q ss_pred CCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHH
Q 019128 203 TPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 242 (346)
Q Consensus 203 ~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~ 242 (346)
+++.++++.|.+++...+||+|++|+++|+||++||++..
T Consensus 182 ~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~ 221 (505)
T PLN02274 182 IDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVK 221 (505)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHh
Confidence 9999999999999999999999999999999999999874
No 102
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.49 E-value=1.3e-13 Score=127.31 Aligned_cols=126 Identities=26% Similarity=0.303 Sum_probs=110.1
Q ss_pred CCCCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhh
Q 019128 13 LNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV 91 (346)
Q Consensus 13 ~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~ 91 (346)
..+-.+++.++|+.+++++++.+|+.+|...|.+++.+++.+++ ++...||||.+|+....+...
T Consensus 144 ~e~~~trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g-------------- 209 (610)
T COG2905 144 SEFILTRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADG-------------- 209 (610)
T ss_pred chHHHHHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcC--------------
Confidence 45667899999999999999999999999999999999888888 899999999999987654311
Q ss_pred hhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHH
Q 019128 92 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKD 171 (346)
Q Consensus 92 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~d 171 (346)
.-...+++++|+. ++++++.++-+.+|+-.|.+++++++||+++|+++|++|..|
T Consensus 210 -----------------------~~~~~~V~evmT~--p~~svd~~~~~feAml~m~r~~I~hl~V~e~gq~~Gilt~~d 264 (610)
T COG2905 210 -----------------------RSKTQKVSEVMTS--PVISVDRGDFLFEAMLMMLRNRIKHLPVTEDGQPLGILTLTD 264 (610)
T ss_pred -----------------------CCcccchhhhhcc--CceeecCcchHHHHHHHHHHhCCceeeeecCCeeeEEeeHHH
Confidence 0123468888884 899999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 019128 172 ILMRVIS 178 (346)
Q Consensus 172 ll~~~~~ 178 (346)
|+ ++..
T Consensus 265 Il-~l~s 270 (610)
T COG2905 265 IL-RLFS 270 (610)
T ss_pred HH-HhhC
Confidence 98 5554
No 103
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=7.1e-13 Score=101.71 Aligned_cols=109 Identities=20% Similarity=0.240 Sum_probs=90.3
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCC
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 104 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 104 (346)
++.++++++++.+|++.|.+++++.+||+| + |+++|+++.+|+++.+....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~--------------------------- 54 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEG--------------------------- 54 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCC---------------------------
Confidence 578899999999999999999999999998 5 89999999999976532100
Q ss_pred hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128 105 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 173 (346)
Q Consensus 105 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll 173 (346)
......++.++|. .++.++++++++.++++.|.+.+...+||+++|+++|+++..|++
T Consensus 55 ---------~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~~~~Gvi~~~dl~ 112 (114)
T cd04630 55 ---------RDPDRVNVYEIMT--KPLISVSPDMDIKYCARLMERTNIRRAPVVENNELIGIISLTDIF 112 (114)
T ss_pred ---------CCCCccCHHHHhc--CCCeeECCCCCHHHHHHHHHHcCCCEeeEeeCCEEEEEEEHHHhh
Confidence 0011224556664 368899999999999999999999999999889999999999986
No 104
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.48 E-value=8.5e-13 Score=99.54 Aligned_cols=102 Identities=25% Similarity=0.310 Sum_probs=87.8
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCChh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 106 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 106 (346)
++.++++++++.++++.|.+++.+.+||+|+++++|+++..++++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~~~~--------------------------------- 48 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVRRAH--------------------------------- 48 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhhccc---------------------------------
Confidence 56789999999999999999999999999999999999999986520
Q ss_pred hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128 107 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 173 (346)
Q Consensus 107 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll 173 (346)
...++.++|. ..+.++++++++.++++.|.+++...+||+++++++|++|..|++
T Consensus 49 ----------~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~~l~ 103 (105)
T cd04599 49 ----------PNRLVADAMT--REVVTISPEASLLEAKRLMEEKKIERLPVLRERKLVGIITKGTIA 103 (105)
T ss_pred ----------ccCCHHHHcc--CCCEEECCCCCHHHHHHHHHHcCCCEeeEEECCEEEEEEEHHHhc
Confidence 0122445554 368899999999999999999999999999999999999999986
No 105
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.47 E-value=6.8e-13 Score=125.76 Aligned_cols=119 Identities=19% Similarity=0.240 Sum_probs=103.6
Q ss_pred CCCCccccccCCCceeEeCCCCcHHHHHHHHHH-----cCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCcccccccc
Q 019128 117 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLE-----LRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEK 190 (346)
Q Consensus 117 ~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~-----~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~ 190 (346)
...+++++|++ ++++++++.++.++++.|.+ .+...++|+| +++++|+++.+|++ .. . ...++++
T Consensus 129 ~e~tvg~iMt~--~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl-~a----~--~~~~v~~ 199 (449)
T TIGR00400 129 SDDSAGRIMTI--EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLI-LA----K--PEEILSS 199 (449)
T ss_pred CcchHHHhCcC--ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHh-cC----C--CCCcHHH
Confidence 45679999984 89999999999999999975 3456788888 78999999999996 21 1 2457999
Q ss_pred ccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHH
Q 019128 191 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 244 (346)
Q Consensus 191 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~ 244 (346)
+|.++++++++++++.++++.|.+++...+||||++|+++|+||.+|+++.+..
T Consensus 200 im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~ 253 (449)
T TIGR00400 200 IMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQS 253 (449)
T ss_pred HhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHh
Confidence 999889999999999999999999999999999999999999999999987543
No 106
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=1.5e-12 Score=99.10 Aligned_cols=107 Identities=21% Similarity=0.274 Sum_probs=90.1
Q ss_pred CCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
+++++++++.++.+|.+.|.+++++.+||+|+|+++|+++..|+.+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~~~~~~------------------------------ 51 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVEKALRH------------------------------ 51 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHHHHHhc------------------------------
Confidence 46788999999999999999999999999998999999999998653210
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll 173 (346)
.....++.++|.+ .+.++.+++++.++++.|.+.+.+.+||+++|+++|++|..|++
T Consensus 52 ---------~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvvt~~di~ 108 (110)
T cd04595 52 ---------GLGHAPVKDYMST--DVVTVPPDTPLSEVQELMVEHDIGRVPVVEDGRLVGIVTRTDLL 108 (110)
T ss_pred ---------ccccCcHHHHhcC--CCEEECCCCcHHHHHHHHHHcCCCeeEEEeCCEEEEEEEhHHhh
Confidence 0012345566653 68889999999999999999999999999989999999999986
No 107
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=1.1e-12 Score=100.20 Aligned_cols=109 Identities=24% Similarity=0.312 Sum_probs=90.4
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
++.+++++.++.++++.|.+++++.+||+| +++++|+++.+++++......
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~---------------------------- 53 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRG---------------------------- 53 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcC----------------------------
Confidence 577899999999999999999999999998 699999999999976431100
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll 173 (346)
......++.++|.+ ++.+++++.++.++++.|.+.+.+.+||+++|+++|++|.+|++
T Consensus 54 --------~~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~~~~~Gvit~~di~ 111 (113)
T cd04623 54 --------ASALDTPVSEIMTR--NVITVTPDDTVDEAMALMTERRFRHLPVVDGGKLVGIVSIGDVV 111 (113)
T ss_pred --------CCccccCHHHhcCC--CcEEECCCCcHHHHHHHHHHcCCCEeEEEeCCEEEEEEEHHHhh
Confidence 00012346667753 68889999999999999999999999999889999999999996
No 108
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.47 E-value=6.4e-13 Score=102.95 Aligned_cols=109 Identities=25% Similarity=0.320 Sum_probs=93.6
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCC---------CccccccccccccCCeee
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL---------PADSTLVEKVMTPNPECA 199 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~---------~~~~~~v~~~m~~~~~~v 199 (346)
++.++++++++.++++.|.+.+++++||++ +++++|+++..|+. +...... .....++.++|..++.++
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i 80 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLR-DASPSPFTTLSEHELYLLLKMPVKEIMTKDVITV 80 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHH-HHhhhhcccchhhhhhhhcCcCHHHHhhCCCeEE
Confidence 467899999999999999999999999999 69999999999997 4332110 112356888998899999
Q ss_pred cCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 200 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 200 ~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
++++++.++++.|.+.+..++||+|+ |+++|++|..|+++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 81 HPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred CCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 99999999999999999999999986 99999999999975
No 109
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=1e-12 Score=105.26 Aligned_cols=109 Identities=30% Similarity=0.378 Sum_probs=94.0
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCC---------------------------
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLP--------------------------- 182 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~--------------------------- 182 (346)
+++++++++++.++++.|.+.+++.+||+++++++|+++..|++ +++.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDIL-KLLVTHDPSGNLWLPSPLELIELPLREFINWEETK 80 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeECCeEEEEecHHHHH-HHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence 47789999999999999999999999999888999999999997 44332110
Q ss_pred -----ccccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 183 -----ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 183 -----~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
....++.++|..++.++++++++.+++..|.+.+.+++||+++ |+++|+||..|+++
T Consensus 81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 0134677888889999999999999999999999999999997 99999999999874
No 110
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.46 E-value=9.6e-13 Score=100.78 Aligned_cols=107 Identities=18% Similarity=0.212 Sum_probs=88.9
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
+++++++++++.+|++.|.+++.+.+||+| +|+++|+++..|+++.+...
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~----------------------------- 53 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKG----------------------------- 53 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcC-----------------------------
Confidence 467899999999999999999999999998 78999999999987542110
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
.....++.++|.+ .+.++++++++.++++.|.+++.+.+||++ +|+++|++|.+|++
T Consensus 54 ---------~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~ 111 (113)
T cd04607 54 ---------LSLDDPVSEVMNR--NPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLL 111 (113)
T ss_pred ---------CCcCCCHHHhhcC--CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence 0011235566653 677899999999999999999999999998 78999999999986
No 111
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.46 E-value=1.5e-12 Score=98.42 Aligned_cols=101 Identities=20% Similarity=0.228 Sum_probs=86.5
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
++.+++++.++.+|++.|.+++.+.+||+| +|+++|+++..|+++..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~-------------------------------- 49 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS-------------------------------- 49 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc--------------------------------
Confidence 577899999999999999999999999998 79999999999986520
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
..++.++|.+ .+.++.+++++.++++.|.+++.+.+||++ +++++|++|.+|++
T Consensus 50 ------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~ 104 (106)
T cd04582 50 ------------GGCCGDHAEP--FKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIA 104 (106)
T ss_pred ------------ccchhhhccc--CCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhh
Confidence 0124455543 467799999999999999999999999998 68999999999986
No 112
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=1.4e-12 Score=99.56 Aligned_cols=107 Identities=21% Similarity=0.247 Sum_probs=89.0
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
++.++++++++.++++.|.+++++.+||+| +|+++|+++..|++......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~----------------------------- 52 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFE----------------------------- 52 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhc-----------------------------
Confidence 567899999999999999999999999998 69999999999987542100
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll 173 (346)
.....++.++|. +++.++.+++++.++++.|.+++.+.+||+++|+++|++|..|++
T Consensus 53 ---------~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~di~ 109 (111)
T cd04626 53 ---------SFLEKKVFNIVS--QDVFYVNEEDTIDEALDIMREKQIGRLPVVDDNKLIGVVRTKDIL 109 (111)
T ss_pred ---------ccccCcHHHHhc--CCcEEEcCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEhHHhc
Confidence 001123555564 368889999999999999999999999999989999999999986
No 113
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.46 E-value=5e-13 Score=118.71 Aligned_cols=112 Identities=27% Similarity=0.357 Sum_probs=98.7
Q ss_pred CCccccccCCCc-eeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCC
Q 019128 119 PSLSTIIPEKSK-VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 196 (346)
Q Consensus 119 ~~v~~im~~~~~-~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~ 196 (346)
.+++++|.+ + +.++.+++++.++++.|.+.+.+++||++ +|+++|+++..|+. +....+.. ...+++++|.+++
T Consensus 155 ~~v~~im~~--~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~-~~~~~~~~-~~~~v~~im~~~~ 230 (268)
T TIGR00393 155 VKVKDLMQT--TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLR-RALLGGGS-LKSEVRDFMTLGP 230 (268)
T ss_pred hhHHHHhCC--CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHH-HHHhcCCc-ccCcHHHhCCCCC
Confidence 468889975 4 88899999999999999999999999999 78999999999997 55443222 2567999999999
Q ss_pred eeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEe
Q 019128 197 ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVD 234 (346)
Q Consensus 197 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit 234 (346)
.++++++++.++++.|.+++...+||+|++|+++|+|+
T Consensus 231 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 231 KTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred eEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 99999999999999999999999999999999999984
No 114
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.46 E-value=1.1e-12 Score=99.26 Aligned_cols=98 Identities=16% Similarity=0.204 Sum_probs=87.6
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEeC----CEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPI 205 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~----~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l 205 (346)
....++++.++.++.+.+.+.+...+||+++ ++++|+++.+|+. +.... +|.+++.++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~-~~~~~-----------~m~~~~~~v~~~~~l 70 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLV-VALKN-----------YIDPSPFTVSPRTSL 70 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHH-HHHHH-----------hccCCCceECCCCcH
Confidence 4678899999999999999998899999985 7899999999996 43321 777889999999999
Q ss_pred HHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 206 VDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 206 ~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
.++++.|.+++.+.+||++ +|+++|+||+.|+++
T Consensus 71 ~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 71 EKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred HHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 9999999999999999995 799999999999985
No 115
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=1.4e-12 Score=99.98 Aligned_cols=110 Identities=25% Similarity=0.408 Sum_probs=90.6
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
++.++++++++.+|++.|.+++++.+||++ +++++|+++..++++.+.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~--------------------------- 54 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSY--------------------------- 54 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhh---------------------------
Confidence 577899999999999999999999999998 7899999999999875432110
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll 173 (346)
......++.++|.+ ++.++.+++++.++++.|.+++.+.+||+++|+++|++|.+|++
T Consensus 55 --------~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvit~~di~ 112 (114)
T cd04629 55 --------HCDGVATVRDIMTT--EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDDGKLVGQISRRDVL 112 (114)
T ss_pred --------ccCCCccHHHHhcc--CceEECCCCcHHHHHHHHHHhCCCccCEEECCEEEEEEEHHHHh
Confidence 00112345566653 67889999999999999999999999999989999999999996
No 116
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.45 E-value=1.5e-12 Score=103.25 Aligned_cols=131 Identities=21% Similarity=0.278 Sum_probs=93.8
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
++.++++++++.+|++.|.+++.+.+||+| +|+++|+++..|+++........... .........
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~-~~~~~~~~~------------- 67 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLP-KKSIKMKRK------------- 67 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccc-hhhhhhhhh-------------
Confidence 567899999999999999999999999999 69999999999998753211000000 000000000
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll 173 (346)
..........+...++.++|.+ ++..+.+++++.++++.|.+++.+.+||+++|+++|++|..|++
T Consensus 68 ~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~Gvit~~di~ 133 (135)
T cd04621 68 AGQKRYRYVKEVPLVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDNDNIVGVITKTDIC 133 (135)
T ss_pred cccccccccccccccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeCCEEEEEEEHHHHh
Confidence 0000000011234467888864 67889999999999999999999999999989999999999986
No 117
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.45 E-value=1.5e-12 Score=101.35 Aligned_cols=119 Identities=22% Similarity=0.286 Sum_probs=93.1
Q ss_pred CCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCC
Q 019128 26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 104 (346)
Q Consensus 26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 104 (346)
++++++++++++.++.+.|.+++++.+||++ +|+++|+++..+++.........
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~------------------------- 56 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRR------------------------- 56 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccc-------------------------
Confidence 5788999999999999999999999999998 69999999999987643211000
Q ss_pred hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 105 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 105 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
.....+.......++.++|.. .++++++++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus 57 --~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~ 122 (124)
T cd04600 57 --PLRGRLRGRDKPETVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLI 122 (124)
T ss_pred --hhhhhhhcccccccHHHhccC--CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhh
Confidence 000000011123346777753 788999999999999999999999999999 89999999999986
No 118
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=2.8e-12 Score=97.97 Aligned_cols=109 Identities=22% Similarity=0.302 Sum_probs=88.6
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCChh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 106 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 106 (346)
++.++++++++.+|++.|.+++...++|.++|+++|+++..|+++......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~----------------------------- 52 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQHG----------------------------- 52 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHHHHHHhcC-----------------------------
Confidence 567899999999999999888888888777899999999999976531100
Q ss_pred hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128 107 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 173 (346)
Q Consensus 107 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll 173 (346)
......++.++|. ..+.++.+++++.++++.|.+++..++||+++|+++|++|.+|++
T Consensus 53 -------~~~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~~~~~Gvvt~~dl~ 110 (112)
T cd04625 53 -------AGVLDTTVRAIMN--PEPIVASPDDSIDEVRRLMVERHLRYLPVLDGGTLLGVISFHDVA 110 (112)
T ss_pred -------CchhcCCHHHHhC--CCCeEECCCCCHHHHHHHHHHcCCCeeeEEECCEEEEEEEHHHhh
Confidence 0001134666665 357889999999999999999999999999999999999999996
No 119
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=2.3e-12 Score=100.28 Aligned_cols=116 Identities=21% Similarity=0.191 Sum_probs=88.3
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCC
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 104 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 104 (346)
++.++++++++.+|++.|.+++++++||+| + |+++|+++..|+++...........
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~---------------------- 59 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPG---------------------- 59 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccc----------------------
Confidence 567899999999999999999999999998 5 8999999999998754322110000
Q ss_pred hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHH
Q 019128 105 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI 172 (346)
Q Consensus 105 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dl 172 (346)
...... ......++|. .++.++++++++.++++.|.+++.+++||++ +++++|+||.+|+
T Consensus 60 ----~~~~~~--~~~~~~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di 120 (123)
T cd04627 60 ----LDPLYP--IPLRDLTIGT--SDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDV 120 (123)
T ss_pred ----hhhhhh--hhhhhcccCc--CCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHh
Confidence 000000 0011223444 3688999999999999999999999999998 7899999999998
No 120
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.44 E-value=8.3e-13 Score=125.46 Aligned_cols=115 Identities=12% Similarity=0.134 Sum_probs=98.1
Q ss_pred ccccccc---CCCeeecCCccHHHHHHHHHhCCcceeeeeeC----CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhh
Q 019128 19 PVSKVMT---RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV 91 (346)
Q Consensus 19 ~v~dim~---~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~----~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~ 91 (346)
+|+++|. .++.++++++|+.+|++.|.+++++.+||+|+ ++++|+||..|+...
T Consensus 95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~------------------- 155 (502)
T PRK07107 95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRIS------------------- 155 (502)
T ss_pred HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhcc-------------------
Confidence 4677775 45679999999999999999999999999984 799999999997421
Q ss_pred hhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHH
Q 019128 92 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSK 170 (346)
Q Consensus 92 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~ 170 (346)
......+++++|++..+++++++++++.+|+++|.++++..+||+| +++++|+||.+
T Consensus 156 ----------------------~~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~ 213 (502)
T PRK07107 156 ----------------------RMSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRK 213 (502)
T ss_pred ----------------------ccCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhH
Confidence 0012356888998655789999999999999999999999999999 78999999999
Q ss_pred HHHH
Q 019128 171 DILM 174 (346)
Q Consensus 171 dll~ 174 (346)
|+++
T Consensus 214 Dilk 217 (502)
T PRK07107 214 DYDS 217 (502)
T ss_pred HHHh
Confidence 9983
No 121
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.44 E-value=1.6e-12 Score=98.72 Aligned_cols=103 Identities=14% Similarity=0.249 Sum_probs=88.0
Q ss_pred CCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCC
Q 019128 26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 104 (346)
Q Consensus 26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 104 (346)
.++.++++++++.+|++.|.+++.+.+||+| +|+++|+++..+++...
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~------------------------------- 50 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD------------------------------- 50 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc-------------------------------
Confidence 3678899999999999999999999999998 79999999999985320
Q ss_pred hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 105 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 105 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
...++.++|. ..+.++++++++.++++.|.+++...+||++ +|+++|++|..|++
T Consensus 51 ------------~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~ 106 (108)
T cd04596 51 ------------PDTTIEKVMT--KNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVL 106 (108)
T ss_pred ------------ccccHHHHhc--CCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhh
Confidence 0123455554 3688899999999999999999999999998 78999999999986
No 122
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=1.7e-12 Score=98.90 Aligned_cols=106 Identities=14% Similarity=0.174 Sum_probs=88.5
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
++.++++++++.+|++.|.+.+.+.+||++ +|+++|+++..++.+.....
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~----------------------------- 52 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEG----------------------------- 52 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhc-----------------------------
Confidence 567899999999999999988999999999 69999999999987642110
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
....++.++|. .++.++++++++.++++.|.+++...+||++ +|+++|++|.+|+.
T Consensus 53 ----------~~~~~v~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~ 109 (111)
T cd04639 53 ----------GPDAPVRGVMR--RDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVG 109 (111)
T ss_pred ----------CCCCcHHHHhc--CCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhh
Confidence 01123555564 3688899999999999999999999999999 59999999999985
No 123
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.44 E-value=1.4e-12 Score=103.33 Aligned_cols=131 Identities=21% Similarity=0.305 Sum_probs=94.5
Q ss_pred CCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCC
Q 019128 26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 104 (346)
Q Consensus 26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 104 (346)
+++.++++++++.+|++.|.+++++++||+| +++++|+++..++++........... ...... ..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~---------~~~~~~-----~~ 67 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRA---------RWLDLL-----AG 67 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhh---------hHHHHh-----cc
Confidence 5788999999999999999999999999999 68999999999997643211000000 000000 00
Q ss_pred hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128 105 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 173 (346)
Q Consensus 105 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll 173 (346)
........ ......++.++|.+ ++..+.+++++.++++.|.+.+.+.+||+++|+++|++|.+|++
T Consensus 68 ~~~~~~~~-~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~g~~~Gvit~~di~ 133 (135)
T cd04586 68 AEELAAAF-VRSHGRKVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVRGGRLVGIVSRADLL 133 (135)
T ss_pred hHHHHHHH-HHhcCCCHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCccCEecCCEEEEEEEhHhhh
Confidence 00000000 01223457788864 68899999999999999999999999999989999999999986
No 124
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.44 E-value=2.7e-12 Score=97.88 Aligned_cols=109 Identities=24% Similarity=0.321 Sum_probs=90.1
Q ss_pred CCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
+++.+++++.++.+|.+.|.+++++.+||+|+++++|+++..++++.....
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~----------------------------- 51 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAE----------------------------- 51 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHhcc-----------------------------
Confidence 357889999999999999999999999999989999999999987542110
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll 173 (346)
......++.++|. .+++++++++++.++++.|.+.+.+++||+++|+++|++|.+|++
T Consensus 52 --------~~~~~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Giit~~di~ 109 (111)
T cd04800 52 --------GLDPDTPVSEVMT--APPITIPPDATVFEALLLMLERGIHHLPVVDDGRLVGVISATDLL 109 (111)
T ss_pred --------CCCccCCHHHHhC--CCCeEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhh
Confidence 0001123555564 368899999999999999999999999999989999999999996
No 125
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.43 E-value=2.6e-12 Score=98.67 Aligned_cols=108 Identities=19% Similarity=0.293 Sum_probs=88.9
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
++.++++++++.++++.|.+.+.+.+||+| +|+++|+++.+|+.+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~---------------------------- 53 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADE---------------------------- 53 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhccc----------------------------
Confidence 567889999999999999999999999999 699999999999876421100
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C--CEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E--NKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~--~~~~Giit~~dll 173 (346)
.....++.++|. ..+.++.+++++.++++.|.+++...+||++ + |+++|++|.+|++
T Consensus 54 ---------~~~~~~~~~~~~--~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~ 113 (115)
T cd04593 54 ---------AGEPSAVDEVAT--PPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVL 113 (115)
T ss_pred ---------ccccccHHHhcc--CCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhh
Confidence 001122455554 3688899999999999999999999999998 4 7999999999986
No 126
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=3e-12 Score=99.19 Aligned_cols=119 Identities=24% Similarity=0.265 Sum_probs=92.8
Q ss_pred CCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
++++++++++++.++++.|.+++++.+||+|+|+++|+++..++.+.........
T Consensus 1 ~~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~~------------------------- 55 (121)
T cd04633 1 KPVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFRPLV------------------------- 55 (121)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHHHhhhhhhhcc-------------------------
Confidence 3678899999999999999999999999999999999999999976532111000
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll 173 (346)
+...........++.++|.+ ++.++.+++++.++++.|.+.+.+.+||+++|+++|++|.+|++
T Consensus 56 --~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~dl~ 119 (121)
T cd04633 56 --RDRHQERRIRNLPVSDIMTR--PVITIEPDTSVSDVASLMLENNIGGLPVVDDGKLVGIVTRTDIL 119 (121)
T ss_pred --cchhhhhhhhccCHHHHccC--CceEECCCCcHHHHHHHHHHcCCCcccEEECCEEEEEEEHHHhh
Confidence 00000111223346666753 68899999999999999999999999999889999999999996
No 127
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.43 E-value=1e-12 Score=128.72 Aligned_cols=123 Identities=12% Similarity=0.152 Sum_probs=102.5
Q ss_pred CCCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhh
Q 019128 14 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE 92 (346)
Q Consensus 14 ~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~ 92 (346)
.+..++++|+|.+++.++++++++.++.+.|.+++.+.+||+| +++++|+++.+|+.+.....
T Consensus 443 ~L~~~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~---------------- 506 (574)
T PRK01862 443 RLRTTQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDK---------------- 506 (574)
T ss_pred HHhhCcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcc----------------
Confidence 4667899999999999999999999999999999999999999 78999999999987642110
Q ss_pred hhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C--CEEEEEeeH
Q 019128 93 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E--NKPRGILTS 169 (346)
Q Consensus 93 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~--~~~~Giit~ 169 (346)
+.....++.++|.+ ++.++++++++.++++.|.+++.+.+||+| + ++++|++|.
T Consensus 507 ---------------------~~~~~~~v~dim~~--~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~ 563 (574)
T PRK01862 507 ---------------------RDTTDKTAADYAHT--PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYK 563 (574)
T ss_pred ---------------------cccccchHHHhccC--CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEH
Confidence 00011245667753 678899999999999999999999999998 4 489999999
Q ss_pred HHHHHH
Q 019128 170 KDILMR 175 (346)
Q Consensus 170 ~dll~~ 175 (346)
+|+++.
T Consensus 564 ~DIl~~ 569 (574)
T PRK01862 564 TSLLDA 569 (574)
T ss_pred HHHHHH
Confidence 999843
No 128
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.43 E-value=3.9e-12 Score=96.80 Aligned_cols=107 Identities=20% Similarity=0.314 Sum_probs=89.0
Q ss_pred CCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
++++++++++++.+|++.|.+++++.+||+++|+++|+++..++++.....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~~~~~~~----------------------------- 51 (110)
T cd04588 1 KPLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAHAIARG----------------------------- 51 (110)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhcc-----------------------------
Confidence 367889999999999999999999999999889999999999987642100
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
....++.++|. .++.++++++++.++++.|.+.+...+||++ +|+++|++|..|++
T Consensus 52 ----------~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~ 108 (110)
T cd04588 52 ----------LELAKVKDVMT--KDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDIL 108 (110)
T ss_pred ----------ccccCHHHHhc--CCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhh
Confidence 00123445554 3688999999999999999999999999998 59999999999986
No 129
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.43 E-value=4.5e-12 Score=96.45 Aligned_cols=105 Identities=28% Similarity=0.412 Sum_probs=88.4
Q ss_pred CCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCC
Q 019128 26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 104 (346)
Q Consensus 26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 104 (346)
++++++++++++.++++.|.+++...+||+| +|+++|+++.+++++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~---------------------------- 53 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARD---------------------------- 53 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhC----------------------------
Confidence 5788999999999999999999999999998 68999999999987542100
Q ss_pred hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 105 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 105 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
..++.++|. .++.++++++++.++++.|.+.+...+||++ +|+++|++|..|++
T Consensus 54 -------------~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~ 108 (110)
T cd04605 54 -------------KKSVEDIMT--RNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDIS 108 (110)
T ss_pred -------------ccCHHHhcC--CCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhh
Confidence 012444554 3688899999999999999999999999998 78999999999985
No 130
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=4.3e-12 Score=96.91 Aligned_cols=109 Identities=22% Similarity=0.288 Sum_probs=89.5
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCChh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 106 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 106 (346)
++.++++++++.++++.|.+++.+.+||+++++++|+++..|+++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~----------------------------- 52 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRN----------------------------- 52 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhhcc-----------------------------
Confidence 567899999999999999999999999999779999999999986432100
Q ss_pred hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128 107 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 173 (346)
Q Consensus 107 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll 173 (346)
......++.++|.+ ++..+.+++++.++++.|.+.+.+.+||+++++++|+++.+|++
T Consensus 53 -------~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~di~ 110 (112)
T cd04802 53 -------LKPREVPVGEVMST--PLITIDPNASLNEAAKLMAKHGIKRLPVVDDDELVGIVTTTDIV 110 (112)
T ss_pred -------CCcccCCHHHhcCC--CcEEECCCCCHHHHHHHHHHcCCCeeEEeeCCEEEEEEEhhhhh
Confidence 00112345666653 68889999999999999999999999999966999999999986
No 131
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.42 E-value=4.6e-12 Score=96.86 Aligned_cols=108 Identities=26% Similarity=0.349 Sum_probs=89.8
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
++.++.+++++.+|++.|.+++.+.+||+| +|+++|+++..|+.+.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~----------------------------- 52 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALES----------------------------- 52 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhh-----------------------------
Confidence 467899999999999999999999999998 68999999999987642210
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
+.....++.++|.+ ++.++.+++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus 53 --------~~~~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~ 111 (113)
T cd04615 53 --------EELKDAKVREVMNS--PVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDIL 111 (113)
T ss_pred --------hhhcCCcHHHhccC--CceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhh
Confidence 01122345666653 688899999999999999999999999998 78999999999986
No 132
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.42 E-value=2.5e-12 Score=122.83 Aligned_cols=122 Identities=19% Similarity=0.216 Sum_probs=101.8
Q ss_pred HHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCcccccccccc
Q 019128 114 ERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVM 192 (346)
Q Consensus 114 ~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m 192 (346)
..+...+++++|.+ ++.++.+++++.++++.|.+++++.+||+| +++++|+||.+|++ +.+.........++.++|
T Consensus 330 ~~l~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~-~~~~~~~~~~~~~v~~im 406 (454)
T TIGR01137 330 DVLKNATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELL-SALFAGKANPDDAVSKVM 406 (454)
T ss_pred HHhccCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHH-HHHhccCCCcCCCHHHhc
Confidence 34566789999974 789999999999999999999999999998 78999999999997 443332222245799999
Q ss_pred ccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128 193 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241 (346)
Q Consensus 193 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~ 241 (346)
.+++.++++++++.++++.|.+++ .|||+++|+++|+||..|++++
T Consensus 407 ~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~ 452 (454)
T TIGR01137 407 SKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSF 452 (454)
T ss_pred CCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHh
Confidence 988999999999999999998864 3556567999999999999986
No 133
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.42 E-value=4.2e-12 Score=95.75 Aligned_cols=99 Identities=20% Similarity=0.177 Sum_probs=85.1
Q ss_pred eeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCChhhH
Q 019128 29 TFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTF 108 (346)
Q Consensus 29 i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 108 (346)
+++++++++.+|++.|.+.++..+||+|+|+++|+++..++....
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~----------------------------------- 48 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKDIENAT----------------------------------- 48 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHhhhc-----------------------------------
Confidence 478999999999999999999999999889999999999986420
Q ss_pred HHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128 109 IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 173 (346)
Q Consensus 109 ~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll 173 (346)
..++.++|. ..+.+++++.++.++++.|.+++.+.+||+++|+++|++|.+|++
T Consensus 49 ---------~~~~~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~iGvit~~dl~ 102 (104)
T cd04594 49 ---------YGDVVDYIV--RGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDDGKFKGIVTLDSIL 102 (104)
T ss_pred ---------ccchhhhhh--cCCcEEcCCCCHHHHHHHHHHcCcceEEEEECCEEEEEEEHHHhh
Confidence 012344454 357889999999999999999999999999999999999999986
No 134
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.42 E-value=4.7e-12 Score=96.05 Aligned_cols=104 Identities=20% Similarity=0.269 Sum_probs=88.4
Q ss_pred CCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCC
Q 019128 26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 104 (346)
Q Consensus 26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 104 (346)
+++.+++++.++.++++.|.++++..+||+| +|+++|+++..|+.....
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~------------------------------ 51 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYK------------------------------ 51 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhh------------------------------
Confidence 4678899999999999999999999999998 689999999999865310
Q ss_pred hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 105 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 105 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
...++.++|. ..+.++++++++.++++.|.+.+.+++||++ +|+++|++|.+|++
T Consensus 52 ------------~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~ 107 (109)
T cd04583 52 ------------EAKSLEDIML--EDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLV 107 (109)
T ss_pred ------------cCCcHhHhhc--CCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhh
Confidence 0123455554 3678899999999999999999999999998 78999999999986
No 135
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.42 E-value=4.4e-12 Score=96.70 Aligned_cols=108 Identities=19% Similarity=0.209 Sum_probs=89.4
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCChh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 106 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 106 (346)
+++++++++++.+|.+.|.+++...+||+|+|+++|+++..+++......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~------------------------------ 51 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLLDAVLLD------------------------------ 51 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHHHHHHcC------------------------------
Confidence 56789999999999999999999999999888999999999987542100
Q ss_pred hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128 107 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 173 (346)
Q Consensus 107 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll 173 (346)
......++.++|. .++..+++++++.++++.|.+++...+||+++++++|++|..|++
T Consensus 52 -------~~~~~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~dl~ 109 (111)
T cd04589 52 -------GLPSSTPVGEIAT--FPLITVDPDDFLFNALLLMTRHRIHRVVVREGGEVVGVLEQTDLL 109 (111)
T ss_pred -------CCCCCCCHHHHhC--CCcEEECCCCcHHHHHHHHHHhCccEEEEeeCCEEEEEEEhHHhh
Confidence 0011234556665 368889999999999999999999999999989999999999986
No 136
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=3.8e-12 Score=97.17 Aligned_cols=107 Identities=21% Similarity=0.254 Sum_probs=89.2
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
++.++++++++.+|++.|.+++++.+||+| +|+++|+++..++++.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~----------------------------- 52 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAG----------------------------- 52 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhcc-----------------------------
Confidence 567899999999999999999999999998 69999999999987653210
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
.....++.++|.+ ++.++.+++++.++++.|.+++...+||++ +|++.|++|..|++
T Consensus 53 ---------~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~ 110 (112)
T cd04624 53 ---------IDLDTPVSEIMTR--DLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLV 110 (112)
T ss_pred ---------CCCccCHHHhccC--CCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhc
Confidence 0012235566653 688899999999999999999999999998 69999999999986
No 137
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.42 E-value=4.9e-12 Score=96.30 Aligned_cols=107 Identities=19% Similarity=0.261 Sum_probs=89.1
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCChh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 106 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 106 (346)
++.++++++++.+|++.|.+++++.+||+++++++|+++.+|+.+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~~~~~~~~----------------------------- 52 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDILRLLASGP----------------------------- 52 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHHHHHhcCC-----------------------------
Confidence 567899999999999999999999999999899999999999876421000
Q ss_pred hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 107 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 107 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
-...++.++|. .+++++++++++.++++.|.+.+.+.+||++ +|+++|+++.+|++
T Consensus 53 ---------~~~~~v~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~ 109 (111)
T cd04611 53 ---------DLQTPVGEVMS--SPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLL 109 (111)
T ss_pred ---------CCCcCHHHhcC--CCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhh
Confidence 01234556664 3688899999999999999999999999998 69999999999986
No 138
>PRK11573 hypothetical protein; Provisional
Probab=99.41 E-value=3.4e-12 Score=119.24 Aligned_cols=133 Identities=12% Similarity=0.169 Sum_probs=107.2
Q ss_pred HHHhhcCCCCccccccccc--CCCeeecCCccHHHHHHHHHhCCcceeeeeeC--CeEEEEEehHHHHHHHHHHHHHHHh
Q 019128 7 RVIARELNLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAE 82 (346)
Q Consensus 7 ~~~~~~~~~~~~~v~dim~--~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~--~~~vGivt~~dll~~~~~~~~~~~~ 82 (346)
.++.+..++.+.+|+++|+ .++++++.++++.++++.+.+++++++||+++ ++++|++..+|++.......
T Consensus 176 ~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~----- 250 (413)
T PRK11573 176 DMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK----- 250 (413)
T ss_pred HHHHHHhccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccC-----
Confidence 3555666999999999999 57899999999999999999999999999973 78999999999986421000
Q ss_pred hhhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CC
Q 019128 83 KGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN 161 (346)
Q Consensus 83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~ 161 (346)
. . ... ++.+++ +++.+++++.++.++++.|.+++.+...|+| .|
T Consensus 251 ------------------~-~----~~~---------~l~~~~---r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG 295 (413)
T PRK11573 251 ------------------E-F----TKE---------NMLRAA---DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYG 295 (413)
T ss_pred ------------------c-C----CHH---------HHHhhc---cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCC
Confidence 0 0 000 122333 3588999999999999999999999999999 79
Q ss_pred EEEEEeeHHHHHHHHHhc
Q 019128 162 KPRGILTSKDILMRVISQ 179 (346)
Q Consensus 162 ~~~Giit~~dll~~~~~~ 179 (346)
...|+||..|++..+..+
T Consensus 296 ~~~GiVTleDilEeivGe 313 (413)
T PRK11573 296 DIQGLVTVEDILEEIVGD 313 (413)
T ss_pred CeEEEeeHHHHHHHHhCC
Confidence 999999999999666654
No 139
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=4e-12 Score=100.31 Aligned_cols=128 Identities=17% Similarity=0.205 Sum_probs=95.0
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
+++++++++++.+|++.|.+++++++||+| +|+++|+++..++++.......... ..+......
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~---------------~~~~~~~~~ 66 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFY---------------VTLLYSVIF 66 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCccc---------------ccccccccc
Confidence 578899999999999999999999999998 6899999999999875321100000 000000000
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll 173 (346)
.. ....+.....++.++|.+ ++..+.+++++.++++.|.+.+.+.+||+++|+++|++|..|++
T Consensus 67 ~~--~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~iGvit~~dl~ 130 (132)
T cd04636 67 LD--ESKIKKLLGKKVEEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDDGKLVGIISRGDII 130 (132)
T ss_pred cc--hHHHHHHcCCCHHHhccC--CceEECCCCcHHHHHHHHHHCCCCeeEEEECCEEEEEEEHHHhh
Confidence 00 112223334467888864 68889999999999999999999999999989999999999997
No 140
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=3.9e-12 Score=98.26 Aligned_cols=110 Identities=20% Similarity=0.297 Sum_probs=91.3
Q ss_pred ceeEeCCCCcHHHHHHHHHHcC-CcEEEEEeCCEEEEEeeHHHHHHHHHhcCC---CccccccccccccCCeeecCCCCH
Q 019128 130 KVVTISPTDTVLMATKKMLELR-LSSAVVTVENKPRGILTSKDILMRVISQNL---PADSTLVEKVMTPNPECATIDTPI 205 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~-~~~l~V~d~~~~~Giit~~dll~~~~~~~~---~~~~~~v~~~m~~~~~~v~~~~~l 205 (346)
++.++++++++.++++.|...+ ++.+||+++|+++|+++..|++ ++..... .....++.++|..++.++++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~-~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~ 80 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALM-ELLSTPYGRALYGKKPVSEVMDPDPLIVEADTPL 80 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHH-HHHhchhhHHHHcCCcHHHhcCCCcEEecCCCCH
Confidence 4567899999999999998877 8899999889999999999997 4433210 011457889999999999999999
Q ss_pred HHHHHHhHhCCCc---eeEEEcCCCcEEEEEehHHHHH
Q 019128 206 VDALHIMHDGKFL---HLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 206 ~~~~~~m~~~~~~---~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
.+++..|.+++.. ..+|++++|+++|+||..|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 81 EEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred HHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 9999999988764 4478888999999999999875
No 141
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.41 E-value=1.1e-12 Score=102.41 Aligned_cols=109 Identities=22% Similarity=0.349 Sum_probs=88.5
Q ss_pred CCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCC
Q 019128 26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 104 (346)
Q Consensus 26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 104 (346)
++++++++++++.+|++.|.+++++.+||+| +|+++|+++..+++......
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~---------------------------- 53 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSG---------------------------- 53 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHh----------------------------
Confidence 4688999999999999999999999999998 68999999999987643211
Q ss_pred hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHH---------cCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 105 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLE---------LRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 105 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~---------~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
......+++++|.+ ++.++.+++++.++.+++.. .+...+||++ +|+++|+||.+|++
T Consensus 54 ---------~~~~~~~v~~im~~--~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~ 121 (124)
T cd04608 54 ---------KVQPSDPVSKALYK--QFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLL 121 (124)
T ss_pred ---------ccCCCCcHHHHhhc--cceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhh
Confidence 00123467888874 78899999999999996532 3566778887 68999999999997
No 142
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.41 E-value=4.8e-12 Score=96.46 Aligned_cols=105 Identities=16% Similarity=0.202 Sum_probs=86.7
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCC
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 104 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 104 (346)
+++++++++++.+|++.|.+++++.+||++ + |+++|+++..++++.....
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~---------------------------- 53 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEG---------------------------- 53 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcC----------------------------
Confidence 578899999999999999999999999998 6 8999999999987642100
Q ss_pred hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 105 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 105 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
.....+.++|. ++.++.+++++.++++.|.+++.+.+||++ +|+++|++|.+|++
T Consensus 54 -----------~~~~~~~~~~~---~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~ 109 (111)
T cd04590 54 -----------EEDLDLRDLLR---PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDIL 109 (111)
T ss_pred -----------CCcCCHHHHhc---CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhh
Confidence 00012333443 467899999999999999999999999999 69999999999986
No 143
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=4.5e-12 Score=98.79 Aligned_cols=120 Identities=28% Similarity=0.371 Sum_probs=91.5
Q ss_pred CCCeeecCCccHHHHHHHHHhCCcceeeeee-C-CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCC
Q 019128 26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS 103 (346)
Q Consensus 26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 103 (346)
+++.+++++.++.+|++.|.+++++.+||+| + |+++|+++..++++.+...........
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~------------------- 61 (125)
T cd04631 1 KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKT------------------- 61 (125)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccc-------------------
Confidence 4678899999999999999999999999998 5 899999999999865321110000000
Q ss_pred ChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 104 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 104 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
.........++.++|. ..+.++++++++.++++.|.+.+.+.+||++ +|+++|+||..|++
T Consensus 62 -------~~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~ 123 (125)
T cd04631 62 -------GNGLEAINEPVRSIMT--RNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLL 123 (125)
T ss_pred -------cccchhhhcCHHHHhc--CCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhh
Confidence 0000011234566665 3688999999999999999999999999998 59999999999997
No 144
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.41 E-value=3.5e-12 Score=97.54 Aligned_cols=108 Identities=21% Similarity=0.251 Sum_probs=89.5
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
++.++++++++.++++.|.+++++.+||+| +|+++|+++..++.+.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~----------------------------- 52 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDP----------------------------- 52 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcc-----------------------------
Confidence 577899999999999999999999999999 68999999999987542100
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeC--CEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE--NKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~--~~~~Giit~~dll 173 (346)
......++.++|.+ ++.++++++++.++++.|.+.+.+.+||+++ ++++|++|.+|++
T Consensus 53 --------~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~ 112 (114)
T cd04613 53 --------SLYDLVVASDIMTK--PPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLL 112 (114)
T ss_pred --------cccccEEHHHhccC--CCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhh
Confidence 00011345666653 6889999999999999999999999999986 8999999999986
No 145
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=4.4e-12 Score=97.41 Aligned_cols=111 Identities=15% Similarity=0.251 Sum_probs=87.7
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
+++++++++++.+|++.|.+++++.+||+| +|+++|+++.+++++.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~--------------------------- 54 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLEN--------------------------- 54 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCc---------------------------
Confidence 578899999999999999999999999998 6899999999999765321000
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
.... .+...++.++|.+ .+.++++++++.++++.|.+.+ .+||++ +++++|++|..|++
T Consensus 55 ----~~~~-~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil 114 (116)
T cd04643 55 ----LDLE-RLVDLKVIDVMNT--DVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREIL 114 (116)
T ss_pred ----hhHH-HHhCCcHHHHhcC--CCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhh
Confidence 0000 0123456677764 6888999999999999998755 589998 79999999999986
No 146
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.40 E-value=1.5e-11 Score=117.18 Aligned_cols=113 Identities=12% Similarity=0.105 Sum_probs=97.3
Q ss_pred ccccCCCeeecCCccHHHHHHHHHhCCcceeeeeeC----CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhc
Q 019128 22 KVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 97 (346)
Q Consensus 22 dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~----~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (346)
..|.++++++++++|+.+|+++|.+++++.+||+|+ |+++|+||..|+....
T Consensus 104 ~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~------------------------ 159 (505)
T PLN02274 104 VGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN------------------------ 159 (505)
T ss_pred ccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc------------------------
Confidence 347789999999999999999999999999999985 7999999999984310
Q ss_pred cCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHH
Q 019128 98 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV 176 (346)
Q Consensus 98 ~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~ 176 (346)
....++.++|++...++++++++++.++++.|.+++...+||++ +++++|+||.+|++ +.
T Consensus 160 ------------------~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIl-k~ 220 (505)
T PLN02274 160 ------------------DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVK-RV 220 (505)
T ss_pred ------------------ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHH-HH
Confidence 12345788887644488999999999999999999999999998 89999999999998 44
Q ss_pred H
Q 019128 177 I 177 (346)
Q Consensus 177 ~ 177 (346)
.
T Consensus 221 ~ 221 (505)
T PLN02274 221 K 221 (505)
T ss_pred h
Confidence 4
No 147
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=3.7e-12 Score=99.59 Aligned_cols=121 Identities=21% Similarity=0.269 Sum_probs=88.6
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
+++++++++++.+|++.|.+++++.+||+| +|+++|+++..|+.+.......... ...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~---------------------~~~ 60 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLL---------------------YRT 60 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhc---------------------ccc
Confidence 577899999999999999999999999998 6999999999998764321100000 000
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
..+. .+.. ......+.|. .++.++++++++.++++.|.+++.+.+||++ +++++|++|..|++
T Consensus 61 ~~~~-~~~~--~~~~~~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil 124 (126)
T cd04642 61 ITFK-ELSE--KFTDSDGVKS--RPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDII 124 (126)
T ss_pred hhhh-hhhh--hccccccccc--CCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHh
Confidence 0000 0000 0011223343 3688999999999999999999999999999 68999999999996
No 148
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.40 E-value=2.4e-12 Score=112.29 Aligned_cols=114 Identities=17% Similarity=0.279 Sum_probs=101.3
Q ss_pred cccccccc--CCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 019128 18 TPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV 94 (346)
Q Consensus 18 ~~v~dim~--~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~ 94 (346)
.+|.|+|+ .+..++.+++++.+..++-.+.+.+++||+| ..+++|+||.+|++..
T Consensus 188 ~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~---------------------- 245 (432)
T COG4109 188 ITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDK---------------------- 245 (432)
T ss_pred eeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcC----------------------
Confidence 68999999 7888999999999999999999999999999 7899999999998643
Q ss_pred hhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 95 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 95 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
....++..+|+ ++++++.+.+++..+.+.|...++..+||++ +.+++|+||++|++
T Consensus 246 ---------------------~~~t~ieKVMt--knp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvl 302 (432)
T COG4109 246 ---------------------KPSTTIEKVMT--KNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVL 302 (432)
T ss_pred ---------------------CCCccHHHHhc--cCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHH
Confidence 22344566676 4799999999999999999999999999999 89999999999998
Q ss_pred HHH
Q 019128 174 MRV 176 (346)
Q Consensus 174 ~~~ 176 (346)
..+
T Consensus 303 k~l 305 (432)
T COG4109 303 KSL 305 (432)
T ss_pred HHH
Confidence 444
No 149
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.40 E-value=6.9e-12 Score=95.46 Aligned_cols=108 Identities=23% Similarity=0.286 Sum_probs=88.8
Q ss_pred CCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
++++++++++++.++++.|.+.+++.+||+|+++++|+++..|+.+......
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~---------------------------- 52 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIRRVPAEGR---------------------------- 52 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHHHHHhcCc----------------------------
Confidence 3678899999999999999999999999998899999999999876421000
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
.....+.++|. .++.++.+++++.++++.|.+++.+.+||++ +++++|++|..|++
T Consensus 53 ----------~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~ 109 (111)
T cd04612 53 ----------EATVLVGDVMT--RDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLL 109 (111)
T ss_pred ----------ccccCHHHhcc--CCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhh
Confidence 00012445554 3688999999999999999999999999999 69999999999986
No 150
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.40 E-value=4.6e-12 Score=96.82 Aligned_cols=109 Identities=16% Similarity=0.207 Sum_probs=89.4
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCChh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 106 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 106 (346)
++.++.+++++.++++.|.+++.+.+||+++|+++|+++..|++...... +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~----------------------~------- 52 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQ----------------------G------- 52 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHHhc----------------------C-------
Confidence 57789999999999999999999999999889999999999987532210 0
Q ss_pred hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 107 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 107 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
......++.++|.+ .+.++++++++.++++.|.+++..++||++ +++++|++|..|++
T Consensus 53 -------~~~~~~~v~~i~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~ 111 (113)
T cd04587 53 -------LDPESTLVERVMTP--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLT 111 (113)
T ss_pred -------CCcCcCCHHHhcCC--CCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhc
Confidence 00001346667753 678899999999999999999999999998 68999999999986
No 151
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=7.3e-12 Score=94.68 Aligned_cols=103 Identities=27% Similarity=0.399 Sum_probs=90.3
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 208 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~ 208 (346)
++.++.++.++.+++..|.+.+++++||++ +++++|+++.++++ .. . ...++.++|..++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~-~~--~----~~~~~~~~~~~~~~~v~~~~~l~~~ 74 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLL-RN--P----EEEQLALLMTRDPPTVSPDDDVKEA 74 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHH-hc--c----ccchHHHHhcCCCceECCCCCHHHH
Confidence 467889999999999999999999999998 68999999999996 31 1 1245778888889999999999999
Q ss_pred HHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 209 LHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 209 ~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
+..|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus 75 ~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 75 AKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred HHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 99999999999999984 89999999999874
No 152
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.39 E-value=6.2e-12 Score=97.32 Aligned_cols=119 Identities=27% Similarity=0.376 Sum_probs=92.2
Q ss_pred CCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
+++.+++++.++.+|++.|.+.++..+||+|+|+++|+++..++.......... . . .
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~~~~~~~~~~---------------------~-~-~ 57 (122)
T cd04585 1 KNPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLKLASPSKATT---------------------L-D-I 57 (122)
T ss_pred CCCEEeCCCCcHHHHHHHHHhCCcceeeEecCCeEEEEEeHHHHHHhhhccccc---------------------c-c-c
Confidence 357789999999999999999999999999989999999999997642110000 0 0 0
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
. .........++.++|.+ ++.++++++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus 58 ~----~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~ 120 (122)
T cd04585 58 W----ELYYLLSKIKVSDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLF 120 (122)
T ss_pred h----hhhhhhcccCHHHhccC--CCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhh
Confidence 0 00000123456677764 688999999999999999999999999999 59999999999997
No 153
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=5.8e-12 Score=97.74 Aligned_cols=117 Identities=24% Similarity=0.387 Sum_probs=91.0
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
+++++.+++++.+|++.|.+.+++.+||++ +|+++|+++..++++......... +.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~------------------~~~---- 59 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDN------------------GEE---- 59 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccc------------------ccc----
Confidence 578899999999999999999999999998 599999999999876532110000 000
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
.. ......++.++|. .++.++++++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus 60 -----~~-~~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~ 120 (122)
T cd04803 60 -----SL-TKERDVPVAEVMK--TDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFL 120 (122)
T ss_pred -----cc-ccccCcCHHHhhC--CCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhh
Confidence 00 0112334566665 3688999999999999999999999999999 58999999999986
No 154
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=7.9e-12 Score=94.52 Aligned_cols=103 Identities=21% Similarity=0.343 Sum_probs=87.5
Q ss_pred CCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
+++++++.+.++.++++.|.+++...+||+|+++++|+++..+++..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~~~--------------------------------- 48 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLLGK--------------------------------- 48 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhcc---------------------------------
Confidence 46788999999999999999888889999988999999999998531
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
....++.++|.+ .+.++.+++++.++++.|.+++..++||++ +|+++|+++..|++
T Consensus 49 ----------~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~ 105 (107)
T cd04610 49 ----------DPDETVEEIMSK--DLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVI 105 (107)
T ss_pred ----------CccccHHHhCCC--CCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhh
Confidence 001235556643 578899999999999999999999999998 78999999999986
No 155
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=3.7e-12 Score=99.67 Aligned_cols=116 Identities=20% Similarity=0.253 Sum_probs=85.6
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
+++++.+++++.+|++.|.+++.+.+||+| +|+++|+++..|+.+....+.....
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~------------------------ 57 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEG------------------------ 57 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHc------------------------
Confidence 467899999999999999999999999998 6899999999998753110000000
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEe----CCCCcHHHHHHHHHHcCCcEEEEEe-C-CEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTI----SPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v----~~~~~l~~~~~~m~~~~~~~l~V~d-~-~~~~Giit~~dll 173 (346)
.......++.++|.+....+.+ .+++++.++++.|.+++.+.+||++ + |+++|+||..|++
T Consensus 58 -------~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~ 124 (126)
T cd04640 58 -------GISRSELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIA 124 (126)
T ss_pred -------CCCchheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHh
Confidence 0001123356677531112233 3688999999999999999999999 5 7999999999996
No 156
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.39 E-value=4.8e-12 Score=97.14 Aligned_cols=108 Identities=18% Similarity=0.237 Sum_probs=86.1
Q ss_pred CCeeecCCccHHHHHHHHHhCC-cceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGK-FRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~-~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
++.++++++++.++++.|.+++ .+.+||.++|+++|+++..|+++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~---------------------------- 53 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIVRLTAIGK---------------------------- 53 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHHHHHhcCC----------------------------
Confidence 5678999999999999998888 67788888899999999999976421000
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCC--CcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPT--DTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~--~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
.....++.++|.+ +++++.++ +++.++++.|.+++.+.+||++ +|+++|++|.+|++
T Consensus 54 ---------~~~~~~i~~~~~~--~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~ 113 (115)
T cd04620 54 ---------DLSDLPIGEVMTQ--PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIR 113 (115)
T ss_pred ---------CccccCHHHhcCC--CcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhh
Confidence 0011335566653 57778776 7899999999999999999998 78999999999996
No 157
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.39 E-value=1e-11 Score=95.52 Aligned_cols=112 Identities=25% Similarity=0.338 Sum_probs=94.0
Q ss_pred cccccCCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCC
Q 019128 21 SKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGT 100 (346)
Q Consensus 21 ~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 100 (346)
.++|.++++++.++.++.+|...|.++++..+||++.++++|++|..|+++.......
T Consensus 2 ~~~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~~~~~~~~~---------------------- 59 (117)
T COG0517 2 KDIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALAAGGK---------------------- 59 (117)
T ss_pred cccccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhccCC----------------------
Confidence 3455688999999999999999999999999999997799999999999876432100
Q ss_pred CCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHH-cCCcEEEEEe-CC-EEEEEeeHHHH
Q 019128 101 SISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLE-LRLSSAVVTV-EN-KPRGILTSKDI 172 (346)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~-~~~~~l~V~d-~~-~~~Giit~~dl 172 (346)
...++.++|.. +++++.++.++.++.+.|.+ ++++.+||++ ++ +++|++|.+|+
T Consensus 60 ----------------~~~~v~~v~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di 116 (117)
T COG0517 60 ----------------RLLPVKEVMTK--PVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI 116 (117)
T ss_pred ----------------ccccHHHhccC--CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHc
Confidence 00046667763 68899999999999999999 7999999999 54 99999999997
No 158
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.38 E-value=2.7e-12 Score=114.07 Aligned_cols=111 Identities=16% Similarity=0.196 Sum_probs=94.7
Q ss_pred ccccccccCC-CeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhh
Q 019128 18 TPVSKVMTRN-PTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE 95 (346)
Q Consensus 18 ~~v~dim~~~-~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (346)
++|+++|.++ +.++++++++.+|++.|.+.+++.+||+| +|+++|+++..|+.+....
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~-------------------- 214 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLG-------------------- 214 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhc--------------------
Confidence 7899999988 99999999999999999999999999999 7999999999998763110
Q ss_pred hccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEee
Q 019128 96 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILT 168 (346)
Q Consensus 96 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit 168 (346)
......++.++|.+ ++.++.+++++.++++.|.+.+...+||++ +|+++|+|+
T Consensus 215 ------------------~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 215 ------------------GGSLKSEVRDFMTL--GPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred ------------------CCcccCcHHHhCCC--CCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 00112446777764 688899999999999999999999999998 789999985
No 159
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.38 E-value=9.4e-12 Score=95.10 Aligned_cols=110 Identities=24% Similarity=0.297 Sum_probs=89.4
Q ss_pred CCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
+++.++++++++.+|++.|.+++++.+||+|+|+++|+++..+++...... +
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~----------------------~------ 52 (113)
T cd04622 1 RDVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAE----------------------G------ 52 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHhhc----------------------c------
Confidence 357889999999999999999999999999999999999999986321100 0
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
......++.++|.. .+.++.+++++.++++.|.+.+.+++||++ +|+++|++|..|++
T Consensus 53 --------~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~ 111 (113)
T cd04622 53 --------RDPDTTTVGDVMTR--GVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLA 111 (113)
T ss_pred --------CCcccCCHHHhccC--CccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhh
Confidence 00111236666653 688899999999999999999999999998 68999999999986
No 160
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=1.3e-11 Score=96.65 Aligned_cols=121 Identities=29% Similarity=0.355 Sum_probs=91.0
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
++.++++++++.+|+++|.+.+.+.+||+| +|+++|+++..|+...+..........
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~---------------------- 59 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTG---------------------- 59 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchh----------------------
Confidence 567899999999999999999999999998 699999999999876432211000000
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe---CCEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d---~~~~~Giit~~dll 173 (346)
... .-.......++.++|.+ +++++++++++.++++.|.+.+...+||++ +++++|+||.+|++
T Consensus 60 -~~~-~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~ 126 (128)
T cd04632 60 -DRS-GEKERMLDLPVYDAMSS--PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVL 126 (128)
T ss_pred -hhh-hhhhhhccCcHHHHhcC--CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhh
Confidence 000 00011223346677753 688999999999999999999999999985 48999999999986
No 161
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.38 E-value=1.5e-11 Score=117.06 Aligned_cols=114 Identities=10% Similarity=0.158 Sum_probs=98.9
Q ss_pred cccccccCCCeeecCCccHHHHHHHHHhCCcceeeeeeC----CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 019128 19 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV 94 (346)
Q Consensus 19 ~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~----~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~ 94 (346)
+.++.|..+++++++++|+.+|+++|.+++++.+||+|+ ++++|+|+.+|+...
T Consensus 97 ~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~---------------------- 154 (495)
T PTZ00314 97 RFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV---------------------- 154 (495)
T ss_pred ccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc----------------------
Confidence 366788899999999999999999999999999999984 799999999997521
Q ss_pred hhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 95 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 95 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
. ....++.++|++..+++++++++++.+++++|.+++...+||+| +++++|+||.+|++
T Consensus 155 ------------------~--~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl 214 (495)
T PTZ00314 155 ------------------K--DKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLK 214 (495)
T ss_pred ------------------c--cCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhh
Confidence 0 01345778887545789999999999999999999999999999 88999999999998
Q ss_pred H
Q 019128 174 M 174 (346)
Q Consensus 174 ~ 174 (346)
+
T Consensus 215 ~ 215 (495)
T PTZ00314 215 K 215 (495)
T ss_pred h
Confidence 3
No 162
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.37 E-value=7.3e-12 Score=95.81 Aligned_cols=108 Identities=19% Similarity=0.282 Sum_probs=89.1
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
++.++++++++.++++.|.+.+.+.+||+| +|+++|+++..++.+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~---------------------------- 54 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGL---------------------------- 54 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccC----------------------------
Confidence 466789999999999999988899999998 689999999999876432100
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
.....++.++|.+ .+.++++++++.++++.|.+.+...+||++ +++++|++|..|++
T Consensus 55 ---------~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~ 112 (114)
T cd04604 55 ---------DILTLPVADVMTR--NPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLL 112 (114)
T ss_pred ---------ccccCCHHHhhcc--CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhh
Confidence 0111246666654 577899999999999999999999999998 89999999999996
No 163
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=1.8e-11 Score=94.96 Aligned_cols=118 Identities=27% Similarity=0.292 Sum_probs=90.3
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCChh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 106 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 106 (346)
+++++++++++.+|++.|.+++++.+||+|+|+++|+++..++.+.+......... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~~~~~~~---------------------~-- 58 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYLKAISPFLGTAGE---------------------T-- 58 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHHHHHHHHhccccc---------------------h--
Confidence 57789999999999999999999999999989999999999998754321100000 0
Q ss_pred hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 107 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 107 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
..... ....++.++|. .+++++++++++.++++.|.+++...+||++ +++++|++|..|++
T Consensus 59 --~~~~~--~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll 120 (122)
T cd04637 59 --EKDLA--TLNRRAHQIMT--RDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLL 120 (122)
T ss_pred --HHHHH--HHHhHHHHhhc--CCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhh
Confidence 00000 00112445554 3688999999999999999999999999998 68999999999997
No 164
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=1e-11 Score=96.37 Aligned_cols=118 Identities=23% Similarity=0.403 Sum_probs=90.6
Q ss_pred CCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCC
Q 019128 26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 104 (346)
Q Consensus 26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 104 (346)
++++++++++++.++++.|.+++++.+||+| +|+++|+++..++++........
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~------------------------- 55 (122)
T cd04635 1 REPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSV------------------------- 55 (122)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccc-------------------------
Confidence 3678899999999999999999999999999 69999999999987631100000
Q ss_pred hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 105 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 105 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
.. ..........++.++|. .++..+++++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus 56 ~~---~~~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~ 120 (122)
T cd04635 56 ED---QQRTQTKASPTVEKIMS--TPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVL 120 (122)
T ss_pred cc---hhhhhhhccCcHHHHhc--CCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhh
Confidence 00 00000012234556665 3688899999999999999999999999998 78999999999986
No 165
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=1.7e-11 Score=98.19 Aligned_cols=140 Identities=18% Similarity=0.247 Sum_probs=94.9
Q ss_pred CCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHh-hhhhHhhhhhhhhhccCCCCCC
Q 019128 26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAE-KGKAIAAAVEGVEKHWGTSISG 104 (346)
Q Consensus 26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~ 104 (346)
++++++++++++.++++.|.+++++.+||+|+|+++|+++..++++.+......... ...........+. ....
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 75 (143)
T cd04634 1 KNPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLR-----EFIN 75 (143)
T ss_pred CCcEEecCCCCHHHHHHHHHHcCCCcceEeECCeEEEEecHHHHHHHHHhccCccccccCCcceeeeccch-----heee
Confidence 467899999999999999999999999999889999999999987654221100000 0000000000000 0000
Q ss_pred hhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128 105 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 173 (346)
Q Consensus 105 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll 173 (346)
...+.....+ ....++.++|.+ .+.++++++++.+++..|.+.+.+.+||+++++++|++|.+|++
T Consensus 76 ~~~~~~~~~~-~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~~Gvvt~~dl~ 141 (143)
T cd04634 76 WEETKRALTD-AGKMKVRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVEDGRLVGIVTRGDII 141 (143)
T ss_pred hHHHHHHHHH-HhcCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhh
Confidence 0011111111 123457777864 68899999999999999999999999999889999999999986
No 166
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.36 E-value=1.7e-11 Score=93.96 Aligned_cols=103 Identities=16% Similarity=0.254 Sum_probs=84.4
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeeeC----CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCC
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSI 102 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~----~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 102 (346)
++.++++++++.+|++.|.+++...+||+|+ |+++|+++..|+....
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~----------------------------- 53 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLT----------------------------- 53 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhh-----------------------------
Confidence 5678999999999999999999999999984 8999999999875320
Q ss_pred CChhhHHHHHHHHhCCCCccccccCCCceeEe--CCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 103 SGPNTFIETLRERMFRPSLSTIIPEKSKVVTI--SPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v--~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
....+++++|.. ...++ ++++++.++++.|.+++...+||++ +++++|++|.+|++
T Consensus 54 -------------~~~~~v~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~ 112 (114)
T cd04602 54 -------------DSETPLSEVMTP--REVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLK 112 (114)
T ss_pred -------------ccCCCHHHhcCC--CceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhh
Confidence 011235666654 34445 4599999999999999999999998 78999999999986
No 167
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.35 E-value=9.4e-12 Score=117.79 Aligned_cols=113 Identities=19% Similarity=0.290 Sum_probs=97.7
Q ss_pred cccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-C---CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhh
Q 019128 19 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N---GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV 94 (346)
Q Consensus 19 ~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~---~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~ 94 (346)
+.++.|.++++++++++++.+|+++|.+++++.+||+| + ++++|+|+.+|++...
T Consensus 81 ~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~--------------------- 139 (450)
T TIGR01302 81 RAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK--------------------- 139 (450)
T ss_pred cccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh---------------------
Confidence 55778888999999999999999999999999999999 4 6999999999985320
Q ss_pred hhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 95 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 95 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
....++.++|.+ .+++++++++++.++++.|.+++.+.+||+| +|+++|+||.+|++
T Consensus 140 ---------------------~~~~~V~dvm~~-~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl 197 (450)
T TIGR01302 140 ---------------------DKGKPVSEVMTR-EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIV 197 (450)
T ss_pred ---------------------cCCCCHHHhhCC-CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhh
Confidence 012346677762 3689999999999999999999999999999 89999999999998
Q ss_pred H
Q 019128 174 M 174 (346)
Q Consensus 174 ~ 174 (346)
+
T Consensus 198 ~ 198 (450)
T TIGR01302 198 K 198 (450)
T ss_pred h
Confidence 3
No 168
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.35 E-value=2.3e-11 Score=94.17 Aligned_cols=117 Identities=26% Similarity=0.363 Sum_probs=90.7
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
++.++++++++.+|++.|.+++++.+||+| +|+++|+++..++.+.........
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~------------------------- 56 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTL------------------------- 56 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccc-------------------------
Confidence 567899999999999999999999999999 699999999999865421110000
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll 173 (346)
..... ......++.++|.+ .+.++++++++.++++.|.+.+.+.+||+++++++|++|.+|++
T Consensus 57 --~~~~~-~~~~~~~v~~~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvv~~~di~ 119 (121)
T cd04584 57 --SEHEL-YLLLKMPVKEIMTK--DVITVHPLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLL 119 (121)
T ss_pred --hhhhh-hhhcCcCHHHHhhC--CCeEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHhh
Confidence 00000 01223446666653 68889999999999999999999999999889999999999986
No 169
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.34 E-value=1.1e-11 Score=94.24 Aligned_cols=99 Identities=21% Similarity=0.290 Sum_probs=81.8
Q ss_pred eecCCccHHHHHHHHHhCC-----cceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCC
Q 019128 30 FVLSDTLAVEALQKMVQGK-----FRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS 103 (346)
Q Consensus 30 ~v~~~~~l~ea~~~m~~~~-----~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 103 (346)
++++++++.++++.|.+++ +..+||+| +|+++|+++.+++++.-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~~------------------------------ 50 (109)
T cd04606 1 AVREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLAD------------------------------ 50 (109)
T ss_pred CccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcCC------------------------------
Confidence 3578999999999998877 47899998 68999999998875410
Q ss_pred ChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 104 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 104 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
...++.++|. .++.++.+++++.++++.|.+.+...+||++ +++++|++|..|++
T Consensus 51 -------------~~~~v~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll 106 (109)
T cd04606 51 -------------PDTPVSDIMD--TDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVI 106 (109)
T ss_pred -------------CcchHHHHhC--CCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhh
Confidence 0122445554 3688899999999999999999999999998 79999999999997
No 170
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.33 E-value=2.4e-11 Score=91.88 Aligned_cols=97 Identities=18% Similarity=0.226 Sum_probs=84.6
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeeeC----CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCC
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSI 102 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~----~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 102 (346)
....+++++++.++.+.|.+++++.+||+++ |+++|+++.+++.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~---------------------------- 54 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALK---------------------------- 54 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHH----------------------------
Confidence 4567899999999999999999999999985 89999999999865310
Q ss_pred CChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128 103 SGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 173 (346)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll 173 (346)
. +|. .++.++++++++.++++.|.+++.+.+||+++|+++|++|.+|++
T Consensus 55 -----------~---------~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~~~~~Gvvt~~dl~ 103 (105)
T cd04591 55 -----------N---------YID--PSPFTVSPRTSLEKVHQLFRKLGLRHLLVVDEGRLVGIITRKDLL 103 (105)
T ss_pred -----------H---------hcc--CCCceECCCCcHHHHHHHHHHcCCCEEEEEECCeEEEEEEhhhhh
Confidence 0 343 367889999999999999999999999999999999999999986
No 171
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.32 E-value=7.2e-11 Score=111.35 Aligned_cols=132 Identities=16% Similarity=0.257 Sum_probs=107.8
Q ss_pred HHHHhhcCCCCccccccccc--CCCeeecCCccHHHHHHHHHhCCcceeeeee--CCeEEEEEehHHHHHHHHHHHHHHH
Q 019128 6 TRVIARELNLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAA 81 (346)
Q Consensus 6 ~~~~~~~~~~~~~~v~dim~--~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd--~~~~vGivt~~dll~~~~~~~~~~~ 81 (346)
++++++..++.+.+|+++|+ .++++++.+.++.++.+.+.+++++++||++ .+.++|++..+|++........
T Consensus 194 ~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~--- 270 (429)
T COG1253 194 REMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS--- 270 (429)
T ss_pred HHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc---
Confidence 44566667999999999999 5688899999999999999999999999998 3789999999999886421100
Q ss_pred hhhhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C
Q 019128 82 EKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E 160 (346)
Q Consensus 82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~ 160 (346)
.......+ .+++.++++.++.++++.|.+.+.+...|+| .
T Consensus 271 ------------------------------------~~~~~~~~---~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEy 311 (429)
T COG1253 271 ------------------------------------DLDLRVLV---RPPLFVPETLSLSDLLEEFREERTHMAIVVDEY 311 (429)
T ss_pred ------------------------------------ccchhhcc---cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcC
Confidence 00011111 2588999999999999999999999999999 7
Q ss_pred CEEEEEeeHHHHHHHHHhc
Q 019128 161 NKPRGILTSKDILMRVISQ 179 (346)
Q Consensus 161 ~~~~Giit~~dll~~~~~~ 179 (346)
|.+.|+||..|++..+..+
T Consensus 312 G~~~GlVTleDIiEeIvGe 330 (429)
T COG1253 312 GGVEGLVTLEDIIEEIVGE 330 (429)
T ss_pred CCeEEEeEHHHHHHHHhCC
Confidence 9999999999999655543
No 172
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.32 E-value=2e-11 Score=92.76 Aligned_cols=104 Identities=23% Similarity=0.356 Sum_probs=85.2
Q ss_pred CCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCC
Q 019128 26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 104 (346)
Q Consensus 26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 104 (346)
+++.++++++++.++++.|.+++.+.+||+| +|+++|+++..++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~------------------------------- 50 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFET------------------------------- 50 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeecc-------------------------------
Confidence 4678899999999999999999999999998 68999999998875310
Q ss_pred hhhHHHHHHHHhCCCCccccccCCCceeEeCC-CCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 105 PNTFIETLRERMFRPSLSTIIPEKSKVVTISP-TDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 105 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~-~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
....++.++|.. .+..+.+ ++++.++++.|.+.+.+.+||++ +|+++|++|.+|++
T Consensus 51 -----------~~~~~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil 108 (110)
T cd04601 51 -----------DLDKPVSEVMTP--ENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIE 108 (110)
T ss_pred -----------cCCCCHHHhccc--CceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhh
Confidence 011235556643 3455555 99999999999999999999998 79999999999986
No 173
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.32 E-value=1.8e-11 Score=116.87 Aligned_cols=118 Identities=25% Similarity=0.346 Sum_probs=96.8
Q ss_pred CCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhh
Q 019128 15 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 93 (346)
Q Consensus 15 ~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~ 93 (346)
++..+++++|.+++.++.+++++.++++.|.+++++.+||+| +++++|+|+..|+++.+...
T Consensus 332 l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~----------------- 394 (454)
T TIGR01137 332 LKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAG----------------- 394 (454)
T ss_pred hccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhcc-----------------
Confidence 677899999999999999999999999999999999999998 68999999999987642210
Q ss_pred hhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128 94 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 173 (346)
Q Consensus 94 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll 173 (346)
......++.++|.+ ++.++++++++.++++.|.+++ ..+|+++++++|+||.+|++
T Consensus 395 --------------------~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~--~~vV~~~g~liGvvt~~dll 450 (454)
T TIGR01137 395 --------------------KANPDDAVSKVMSK--KFIQIGEGEKLSDLSKFLEKNS--SAIVTEEGKPIGVVTKIDLL 450 (454)
T ss_pred --------------------CCCcCCCHHHhcCC--CCeEECCcCcHHHHHHHHHHCC--eeEEEECCEEEEEEEHHHHH
Confidence 00112346677763 6788999999999999998754 34555689999999999998
No 174
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=6.4e-11 Score=89.47 Aligned_cols=102 Identities=26% Similarity=0.353 Sum_probs=84.8
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
++.++.+++++.+++..|.+.+++.+||++ +++++|+++.++++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~-------------------------------- 49 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNP-------------------------------- 49 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhcc--------------------------------
Confidence 467889999999999999999999999998 68999999999986420
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll 173 (346)
...++.++|. ..+.++.+++++.++++.|.+.+.+.+||+++|+++|++|..|++
T Consensus 50 -----------~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~~~~G~it~~d~~ 104 (106)
T cd04638 50 -----------EEEQLALLMT--RDPPTVSPDDDVKEAAKLMVENNIRRVPVVDDGKLVGIVTVADIV 104 (106)
T ss_pred -----------ccchHHHHhc--CCCceECCCCCHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhh
Confidence 0011233343 357889999999999999999999999999988999999999986
No 175
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.29 E-value=4.6e-11 Score=94.34 Aligned_cols=98 Identities=30% Similarity=0.301 Sum_probs=78.7
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCcc----------cccccccc------
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPAD----------STLVEKVM------ 192 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~----------~~~v~~~m------ 192 (346)
++.++.+++++.++++.|.+.+++.+||+| +|+++|++|.+|+++.......... ...+.++|
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 81 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGISY 81 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhhh
Confidence 578899999999999999999999999999 7999999999999843332221100 01123354
Q ss_pred ---ccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCC
Q 019128 193 ---TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG 227 (346)
Q Consensus 193 ---~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g 227 (346)
.++++++++++++.+|++.|.+++++++||+|+.+
T Consensus 82 ~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~ 119 (133)
T cd04592 82 GGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV 119 (133)
T ss_pred cccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence 46789999999999999999999999999999654
No 176
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.28 E-value=7.2e-11 Score=89.56 Aligned_cols=106 Identities=24% Similarity=0.314 Sum_probs=84.1
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCChh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 106 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 106 (346)
++.++++++++.+|++.|.+++++.+||+++|+++|+++..++.+.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~---------------------------- 53 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALIEGKA---------------------------- 53 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHHHHHhcccc----------------------------
Confidence 5678999999999999999999999999998999999999998775321000
Q ss_pred hHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 107 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 107 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
....++.++|. .++.++++++++.++++.|.+ .. .+||++ +++++|++|.+|++
T Consensus 54 ---------~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~~~~~~~Gvvt~~di~ 108 (110)
T cd04609 54 ---------KFSLPVREVMG--EPLPTVDPDAPIEELSELLDR-GN-VAVVVDEGGKFVGIITRADLL 108 (110)
T ss_pred ---------ccCcCHHHHhc--CCCceeCCCCcHHHHHHHHHh-CC-ceeEEecCCeEEEEEeHHHhh
Confidence 00123455564 367889999999999999988 33 467777 79999999999996
No 177
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.25 E-value=1.5e-10 Score=87.65 Aligned_cols=108 Identities=27% Similarity=0.339 Sum_probs=87.2
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
++.++++++++.++++.|.+++.+.+||++ +++++|+++..+++.........
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~-------------------------- 55 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLD-------------------------- 55 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCC--------------------------
Confidence 567889999999999999999999999999 58999999999997653211000
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
....+.++|. .++..+.+++++.++++.|.+.+.+.+||++ +++++|+++.+|++
T Consensus 56 -----------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~ 111 (113)
T cd02205 56 -----------PLVTVGDVMT--RDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDIL 111 (113)
T ss_pred -----------ccccHHHHhc--CCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhh
Confidence 0000233443 3678899999999999999999999999999 69999999999986
No 178
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.25 E-value=1.6e-10 Score=89.08 Aligned_cols=111 Identities=16% Similarity=0.181 Sum_probs=86.5
Q ss_pred CCeeecCCccHHHHHHHHHhCC-cceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGK-FRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~-~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
++.++++++++.+|++.|...+ ++.+||+|+|+++|+++..++++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~~~~~~~~---------------------------- 53 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALMELLSTPY---------------------------- 53 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHHHHHhchh----------------------------
Confidence 5667899999999999998877 89999998899999999999876422100
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCc---EEEEEe-CCEEEEEeeHHHHH
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLS---SAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~---~l~V~d-~~~~~Giit~~dll 173 (346)
........++.++|.+ .+..+++++++.++++.|.+.+.. ..||++ +|+++|++|..|++
T Consensus 54 ------~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~ 117 (119)
T cd04598 54 ------GRALYGKKPVSEVMDP--DPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLL 117 (119)
T ss_pred ------hHHHHcCCcHHHhcCC--CcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHh
Confidence 0011123456777764 688899999999999999988753 345666 89999999999986
No 179
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.20 E-value=2.6e-10 Score=100.78 Aligned_cols=135 Identities=16% Similarity=0.173 Sum_probs=109.4
Q ss_pred HHHHhhcCCCCccccccccc--CCCeeecCCccHHHHHHHHHhCCcceeeeee-C-CeEEEEEehHHHHHHHHHHHHHHH
Q 019128 6 TRVIARELNLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAA 81 (346)
Q Consensus 6 ~~~~~~~~~~~~~~v~dim~--~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~-~~~vGivt~~dll~~~~~~~~~~~ 81 (346)
+.++..-.++++++|+|+|. .++..++.+++.++.++.+.+..+.++|++. + ++++|++..+|+++.+.+.-+.
T Consensus 188 rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~-- 265 (423)
T COG4536 188 RDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEF-- 265 (423)
T ss_pred HHHHhcccccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcc--
Confidence 44566677999999999998 5688999999999999999999999999996 3 6799999999999875432110
Q ss_pred hhhhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C
Q 019128 82 EKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E 160 (346)
Q Consensus 82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~ 160 (346)
-.+.+.... .++.++++.+++.+-+..|.+++-+...|+| .
T Consensus 266 --------------------------~k~d~~~~a------------~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEY 307 (423)
T COG4536 266 --------------------------TKEDILRAA------------DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEY 307 (423)
T ss_pred --------------------------cHhHHHHHh------------cCCeecCCCCcHHHHHHHHHHhcceEEEEEecc
Confidence 001111111 3689999999999999999999998999999 8
Q ss_pred CEEEEEeeHHHHHHHHHhcC
Q 019128 161 NKPRGILTSKDILMRVISQN 180 (346)
Q Consensus 161 ~~~~Giit~~dll~~~~~~~ 180 (346)
|.+.|+||..|+++.....-
T Consensus 308 G~i~GLVTLEDIlEEIVGdf 327 (423)
T COG4536 308 GDIQGLVTLEDILEEIVGDF 327 (423)
T ss_pred CcEEeeeeHHHHHHHHhccc
Confidence 99999999999997766543
No 180
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.20 E-value=5.4e-11 Score=79.19 Aligned_cols=56 Identities=34% Similarity=0.571 Sum_probs=52.8
Q ss_pred cccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHH
Q 019128 188 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 243 (346)
Q Consensus 188 v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~ 243 (346)
++++|+++++++++++++.++++.|.+++.+++||+|++|+++|+||.+|+++++.
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 46789999999999999999999999999999999999999999999999998754
No 181
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=99.18 E-value=4.8e-11 Score=106.11 Aligned_cols=106 Identities=32% Similarity=0.399 Sum_probs=96.7
Q ss_pred ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe----CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCH
Q 019128 130 KVVTISPTDTVLMATKKMLELRLSSAVVTV----ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPI 205 (346)
Q Consensus 130 ~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d----~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l 205 (346)
+++.+.|+.++.++++....+++..+||++ ..+++|+||.+|+ .++.+ ....+.++|++.+++.+...++
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi--~f~~~----~~~~~~~vmt~~~~~~~~gi~l 190 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDI--QFLED----NSLLVSDVMTKNPVTGAQGITL 190 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhh--hhhhc----ccchhhhhcccccccccccccH
Confidence 578899999999999999999999999997 5689999999999 34422 2678999999999999999999
Q ss_pred HHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128 206 VDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241 (346)
Q Consensus 206 ~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~ 241 (346)
.++-+.+.+.+...+||||++|.++-+|++.|+.+.
T Consensus 191 ~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 191 KEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN 226 (503)
T ss_pred HHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence 999999999999999999999999999999999986
No 182
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.17 E-value=2.8e-10 Score=89.84 Aligned_cols=114 Identities=15% Similarity=0.011 Sum_probs=77.6
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
++.++++++++.+|++.|.+++++++||+| +|+++|++|..|++++.......... .. . ..++
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~----~~---~---~~~~------ 65 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQ----PE---D---ETKQ------ 65 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccc----cc---h---hhcc------
Confidence 578999999999999999999999999999 69999999999998764211000000 00 0 0000
Q ss_pred hhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe
Q 019128 106 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV 159 (346)
Q Consensus 106 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d 159 (346)
.....+.+.+....+.+.|. .+++++.+++++.+|++.|.+++++++||++
T Consensus 66 -~~~~~v~~i~~~~~~~~~~~--~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd 116 (133)
T cd04592 66 -TNTCLVSSVCTKGISYGGQE--CGLWTCTPDTDLTTAKKLMEAKGVKQLPVVK 116 (133)
T ss_pred -cccccHHHHhhhhhhhcccC--CCCEEECCCCCHHHHHHHHHHcCCCcCCEec
Confidence 00000111221111223333 3688999999999999999999999999998
No 183
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.17 E-value=2.9e-10 Score=105.93 Aligned_cols=116 Identities=19% Similarity=0.287 Sum_probs=102.8
Q ss_pred CCCccccccCCCceeEeCCCCcHHHHHHHHHHcC-----CcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccc
Q 019128 118 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELR-----LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKV 191 (346)
Q Consensus 118 ~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~-----~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~ 191 (346)
..+++.+|+. +.++++++.|+.+++..+++.+ ...+.|+| ++++.|+++.++++ ......+++++
T Consensus 131 e~taG~~Mt~--e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll-------~a~~~~~i~~i 201 (451)
T COG2239 131 EDTAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLL-------TAEPDELLKDL 201 (451)
T ss_pred hhhhhcccee--eeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHh-------cCCcHhHHHHH
Confidence 4568899984 8999999999999999998543 56788999 78899999999997 11126789999
Q ss_pred cccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHH
Q 019128 192 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAA 242 (346)
Q Consensus 192 m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~ 242 (346)
|.+.++++++++..+++.+.|.+++.-.+||||++++++|+||..|++..+
T Consensus 202 m~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi 252 (451)
T COG2239 202 MEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVI 252 (451)
T ss_pred hcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998763
No 184
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.13 E-value=1.3e-10 Score=77.37 Aligned_cols=54 Identities=30% Similarity=0.453 Sum_probs=51.2
Q ss_pred ccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHH
Q 019128 20 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDA 73 (346)
Q Consensus 20 v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~ 73 (346)
|+++|+++++++++++++.+|++.|.+++++++||+| +|+++|++|.+|+++++
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence 5789999999999999999999999999999999998 89999999999998864
No 185
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.12 E-value=5.8e-10 Score=103.93 Aligned_cols=123 Identities=21% Similarity=0.289 Sum_probs=105.1
Q ss_pred HHHHhhcCCCCcccccccccCCCeeecCCccHHHHHHHHHh-----CCcceeeeee-CCeEEEEEehHHHHHHHHHHHHH
Q 019128 6 TRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQ-----GKFRHLPVVE-NGEVIALLDIAKCLYDAIARMER 79 (346)
Q Consensus 6 ~~~~~~~~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~-----~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~ 79 (346)
|..+....++.+-+++.+|+.++++++++.|+.+|+..+++ ..+..++|+| +++++|+++.++++.+
T Consensus 120 r~~v~~~l~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a------- 192 (451)
T COG2239 120 RARVRQLLSYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTA------- 192 (451)
T ss_pred HHHHHHhcCCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcC-------
Confidence 44456667888999999999999999999999999999985 3478899999 7899999999998753
Q ss_pred HHhhhhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe
Q 019128 80 AAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV 159 (346)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d 159 (346)
+..+. ++++|.+ .++++.++++.+++.+.+.+++.-.+||+|
T Consensus 193 ---------------------------~~~~~---------i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd 234 (451)
T COG2239 193 ---------------------------EPDEL---------LKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVD 234 (451)
T ss_pred ---------------------------CcHhH---------HHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceEC
Confidence 11222 4555553 589999999999999999999999999999
Q ss_pred -CCEEEEEeeHHHHH
Q 019128 160 -ENKPRGILTSKDIL 173 (346)
Q Consensus 160 -~~~~~Giit~~dll 173 (346)
+++++|++|..|++
T Consensus 235 ~~~~LiG~itiDDii 249 (451)
T COG2239 235 EDNRLIGIITIDDII 249 (451)
T ss_pred CCCceeeeeeHHHHH
Confidence 88999999999998
No 186
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.02 E-value=1.8e-08 Score=92.66 Aligned_cols=107 Identities=19% Similarity=0.201 Sum_probs=91.9
Q ss_pred eeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHH
Q 019128 131 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 209 (346)
Q Consensus 131 ~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~ 209 (346)
.....++.+..++++.|...+...+.|++ ++++.|.++.+++. .+... ...+.+.+.....++++++++.+++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (363)
T TIGR01186 252 PITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIK-QARKK-----AQGLQDVLIDDIYTVDAGTLLRETV 325 (363)
T ss_pred ceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHH-HHhhc-----CCchhhhhccCCceECCCCcHHHHH
Confidence 34566777899999999999999999998 88999999999986 55433 2356777778888999999999999
Q ss_pred HHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHH
Q 019128 210 HIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVA 244 (346)
Q Consensus 210 ~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~ 244 (346)
..|.+++.. +||+|++|+++|+||..++++++.+
T Consensus 326 ~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 326 RKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYD 359 (363)
T ss_pred HHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 999999998 9999999999999999999987543
No 187
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.94 E-value=5.7e-08 Score=90.42 Aligned_cols=103 Identities=18% Similarity=0.193 Sum_probs=89.0
Q ss_pred eCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHHHHh
Q 019128 134 ISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIM 212 (346)
Q Consensus 134 v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m 212 (346)
..++.+..+++..|...+.+.++|+| ++++.|+++..++. +.... ...+.+.+.....++++++++.+++..|
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLK-TALTQ-----QQGLDAALIDAPLAVDAQTPLSELLSHV 363 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHH-hhhhc-----CCchhhhhccCCceeCCCCCHHHHHHHH
Confidence 44667889999999999999999999 89999999999996 44432 2356677777889999999999999999
Q ss_pred HhCCCceeEEEcCCCcEEEEEehHHHHHHHH
Q 019128 213 HDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 243 (346)
Q Consensus 213 ~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~ 243 (346)
.+.... +||||++|+++|+||..++++++.
T Consensus 364 ~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~ 393 (400)
T PRK10070 364 GQAPCA-VPVVDEDQQYVGIISKGMLLRALD 393 (400)
T ss_pred HhCCCc-EEEECCCCcEEEEEEHHHHHHHHH
Confidence 998776 999999999999999999998753
No 188
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.87 E-value=8.1e-09 Score=85.68 Aligned_cols=131 Identities=15% Similarity=0.189 Sum_probs=106.2
Q ss_pred HHHHhhcCCCCccccccccc--CCCeeecCCccHHHHHHHHHhCCcceeeeee--CCeEEEEEehHHHHHHHHHHHHHHH
Q 019128 6 TRVIARELNLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAA 81 (346)
Q Consensus 6 ~~~~~~~~~~~~~~v~dim~--~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd--~~~~vGivt~~dll~~~~~~~~~~~ 81 (346)
+.++.....+.+++|+|+|. .+.++++.+.++.+.+..+.+..++++||+. .+.+.|++..+||++++...-
T Consensus 55 ~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~---- 130 (293)
T COG4535 55 LDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDA---- 130 (293)
T ss_pred HHHHHHHHHHHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCc----
Confidence 34556666788999999998 4678999999999999999999999999996 477999999999998632110
Q ss_pred hhhhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-C
Q 019128 82 EKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E 160 (346)
Q Consensus 82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~ 160 (346)
..-.+.++.. +.+.++++..+...++.+...+.+..+|+| -
T Consensus 131 -----------------------------------~~F~i~~lLR---Pav~VPESKrvd~lLkeFR~~RnHMAIViDEf 172 (293)
T COG4535 131 -----------------------------------EPFDIKELLR---PAVVVPESKRVDRLLKEFRSQRNHMAIVIDEF 172 (293)
T ss_pred -----------------------------------ccccHHHhcc---cceecccchhHHHHHHHHHhhcCceEEEEecc
Confidence 0011333333 588899999999999999999999999999 8
Q ss_pred CEEEEEeeHHHHHHHHHh
Q 019128 161 NKPRGILTSKDILMRVIS 178 (346)
Q Consensus 161 ~~~~Giit~~dll~~~~~ 178 (346)
|.+.|+||..|++.....
T Consensus 173 GgVsGLVTIEDiLEqIVG 190 (293)
T COG4535 173 GGVSGLVTIEDILEQIVG 190 (293)
T ss_pred CCeeeeEEHHHHHHHHhc
Confidence 899999999999955554
No 189
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.72 E-value=2.5e-08 Score=93.54 Aligned_cols=125 Identities=13% Similarity=0.203 Sum_probs=103.9
Q ss_pred HhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe---C---CEEEEEeeHHHHHHHHHhcCCCc-----
Q 019128 115 RMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---E---NKPRGILTSKDILMRVISQNLPA----- 183 (346)
Q Consensus 115 ~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d---~---~~~~Giit~~dll~~~~~~~~~~----- 183 (346)
.|.+..++++|.+ ++++++..+.+....+.+....++.+||+| . +++.|+|-++.++ .++.++...
T Consensus 578 ~mr~L~a~ev~~~--pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~-vlL~~~~f~~~~~~ 654 (762)
T KOG0474|consen 578 YMRNLTAGEVMSK--PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLL-VLLKKRVFVEESRS 654 (762)
T ss_pred HhhhhhHhhhccC--CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHH-HHHHhhhhhccCcc
Confidence 3455678899985 899999999999999999999999999998 2 4788999888876 333221000
Q ss_pred ---------------------------------cccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEE
Q 019128 184 ---------------------------------DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVV 230 (346)
Q Consensus 184 ---------------------------------~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~ 230 (346)
.-.++..+|++.|+++++++++..++..|++-+.|++.||+...+++
T Consensus 655 ~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~ 734 (762)
T KOG0474|consen 655 TFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVV 734 (762)
T ss_pred ccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCcee
Confidence 01355678889999999999999999999999999999999999999
Q ss_pred EEEehHHHHHHH
Q 019128 231 DVVDVIHITHAA 242 (346)
Q Consensus 231 Giit~~Di~~~~ 242 (346)
|++|++|+..+-
T Consensus 735 gilTR~D~~~~~ 746 (762)
T KOG0474|consen 735 GILTRKDLARYR 746 (762)
T ss_pred EEEehhhhhhHH
Confidence 999999999764
No 190
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=3.4e-07 Score=85.31 Aligned_cols=130 Identities=10% Similarity=0.038 Sum_probs=96.2
Q ss_pred chhHHHHhhcCCCCcccccccccCCCe---eecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHH
Q 019128 3 DIATRVIARELNLEETPVSKVMTRNPT---FVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARME 78 (346)
Q Consensus 3 d~~~~~~~~~~~~~~~~v~dim~~~~i---~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~ 78 (346)
++++.++.......-.++.++|.+.+. ...++.+..+|+..|..++.+.++|+| +++++|+++..++....-
T Consensus 259 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---- 334 (400)
T PRK10070 259 DYVRTFFRGVDISQVFSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALT---- 334 (400)
T ss_pred HHHHHHHhccccccccchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhh----
Confidence 345555544333334678888864332 334677899999999999999999999 799999999999865310
Q ss_pred HHHhhhhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEE
Q 019128 79 RAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVT 158 (346)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~ 158 (346)
....+.+.+. ....++.+++++.+++..+.+.... +||+
T Consensus 335 --------------------------------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~ 373 (400)
T PRK10070 335 --------------------------------------QQQGLDAALI--DAPLAVDAQTPLSELLSHVGQAPCA-VPVV 373 (400)
T ss_pred --------------------------------------cCCchhhhhc--cCCceeCCCCCHHHHHHHHHhCCCc-EEEE
Confidence 0011233332 2577899999999999999997766 9999
Q ss_pred e-CCEEEEEeeHHHHHHHHH
Q 019128 159 V-ENKPRGILTSKDILMRVI 177 (346)
Q Consensus 159 d-~~~~~Giit~~dll~~~~ 177 (346)
| +|+++|+||..+++..+.
T Consensus 374 ~~~~~~~g~~~~~~~~~~~~ 393 (400)
T PRK10070 374 DEDQQYVGIISKGMLLRALD 393 (400)
T ss_pred CCCCcEEEEEEHHHHHHHHH
Confidence 9 899999999999984443
No 191
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.68 E-value=4.2e-08 Score=92.06 Aligned_cols=157 Identities=16% Similarity=0.140 Sum_probs=107.1
Q ss_pred CCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeeeC------CeEEEEEehHHHHHHHHHHHHHHHhhhh-hH
Q 019128 15 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN------GEVIALLDIAKCLYDAIARMERAAEKGK-AI 87 (346)
Q Consensus 15 ~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~------~~~vGivt~~dll~~~~~~~~~~~~~~~-~~ 87 (346)
.++++++|+|++++++++.-+.+....+.+..++++.+||+|+ +++.|++-.+.++..+..+......... ..
T Consensus 579 mr~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~ 658 (762)
T KOG0474|consen 579 MRNLTAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDL 658 (762)
T ss_pred hhhhhHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCc
Confidence 4678999999999999999999999999999999999999982 4789999988887755443222111000 00
Q ss_pred hhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEE
Q 019128 88 AAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGI 166 (346)
Q Consensus 88 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Gi 166 (346)
.....---..+....++..+..-.-.+.-...++..+|.| .+.++++++++..+..+++.-+.+.+.|+. ..+++|+
T Consensus 659 ~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~--sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gi 736 (762)
T KOG0474|consen 659 PVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNP--SPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGI 736 (762)
T ss_pred chhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCC--CCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEE
Confidence 0000000000000111111111011111223456778875 789999999999999999999999999998 6778999
Q ss_pred eeHHHHH
Q 019128 167 LTSKDIL 173 (346)
Q Consensus 167 it~~dll 173 (346)
+|++|+.
T Consensus 737 lTR~D~~ 743 (762)
T KOG0474|consen 737 LTRKDLA 743 (762)
T ss_pred Eehhhhh
Confidence 9999997
No 192
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.57 E-value=1.3e-06 Score=80.43 Aligned_cols=108 Identities=17% Similarity=0.243 Sum_probs=85.1
Q ss_pred cCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCC
Q 019128 25 TRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS 103 (346)
Q Consensus 25 ~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 103 (346)
........++.+..+++..|..++...+.|+| ++++.|.++..++..+.-
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------------------------- 299 (363)
T TIGR01186 249 NTGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARK----------------------------- 299 (363)
T ss_pred cccceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhh-----------------------------
Confidence 33444566778899999999999999999998 799999999888754310
Q ss_pred ChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHh
Q 019128 104 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVIS 178 (346)
Q Consensus 104 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~ 178 (346)
....+.+.+. ..+.++++++++.+++..|.+++.. +||+| +|+++|+||..+++ ..+.
T Consensus 300 -------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~-~~~~ 358 (363)
T TIGR01186 300 -------------KAQGLQDVLI--DDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLV-DALY 358 (363)
T ss_pred -------------cCCchhhhhc--cCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHH-HHHH
Confidence 0012333333 3567899999999999999999998 99999 89999999999998 4443
No 193
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.52 E-value=2.6e-07 Score=82.74 Aligned_cols=104 Identities=15% Similarity=0.204 Sum_probs=89.6
Q ss_pred CCCeeecCCccHHHHHHHHHhCCcceeeeeeC----CeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCC
Q 019128 26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTS 101 (346)
Q Consensus 26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~----~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 101 (346)
.+|+.+.|+.++.++++....+++..+||.++ +|++|+||.+|+-..
T Consensus 116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~----------------------------- 166 (503)
T KOG2550|consen 116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL----------------------------- 166 (503)
T ss_pred cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-----------------------------
Confidence 47889999999999999999999999999973 689999999997321
Q ss_pred CCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 102 ISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
. -....+.++|++ ..++.+...++.++-+++.+.+-..+||++ +|+++.++++.|+.
T Consensus 167 -----------~--~~~~~~~~vmt~--~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~ 224 (503)
T KOG2550|consen 167 -----------E--DNSLLVSDVMTK--NPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLM 224 (503)
T ss_pred -----------h--cccchhhhhccc--ccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhh
Confidence 0 112347888886 448889999999999999999999999999 99999999999997
No 194
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.48 E-value=2.6e-07 Score=70.69 Aligned_cols=53 Identities=26% Similarity=0.412 Sum_probs=50.2
Q ss_pred ccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHH
Q 019128 18 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCL 70 (346)
Q Consensus 18 ~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll 70 (346)
.+++++|.+++.++++++++.+|++.|.+++.+.+||+| +|+++|+++..++.
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~ 111 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLA 111 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhh
Confidence 689999999999999999999999999999999999998 78999999999975
No 195
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.46 E-value=2.4e-07 Score=90.57 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=92.6
Q ss_pred hCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhc---------------
Q 019128 116 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ--------------- 179 (346)
Q Consensus 116 ~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~--------------- 179 (346)
....+++++|.. ++++++++++++.++.+.|.+++++.+||+| +|+++|++|.+|++ .....
T Consensus 243 ~~~~~V~~iM~~-~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~-~~~~~~~iLVD~~e~~q~~~ 320 (546)
T PRK14869 243 NQSIPVSYIMTT-EDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLL-SPVRKKVILVDHNEKSQAVE 320 (546)
T ss_pred hcCCCHHHhccC-CCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhh-ccccCceEEEcCcccccccc
Confidence 345678999972 3789999999999999999999999999999 89999999999998 32221
Q ss_pred CCCc-------cccccccccccCCeee---cCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128 180 NLPA-------DSTLVEKVMTPNPECA---TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241 (346)
Q Consensus 180 ~~~~-------~~~~v~~~m~~~~~~v---~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~ 241 (346)
+... ..-++.++|+..++.+ +...+..-+.+.|.+.++...|++. ..-+.||+|-++.++.
T Consensus 321 ~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia-~~ll~gIlsDT~~f~~ 391 (546)
T PRK14869 321 GIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIA-GLLLAAILSDTLLFKS 391 (546)
T ss_pred chhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHHhcCccC
Confidence 0000 0113556676666544 4466777888899999998888876 3468888887777753
No 196
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.35 E-value=8.6e-07 Score=67.75 Aligned_cols=55 Identities=29% Similarity=0.579 Sum_probs=51.5
Q ss_pred cccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHH
Q 019128 186 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITH 240 (346)
Q Consensus 186 ~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~ 240 (346)
.++.++|.+++.++++++++.++++.|.+.+.+.+||+|++|+++|+||..||.+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 5688999899999999999999999999999999999999999999999999864
No 197
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.27 E-value=8.8e-06 Score=71.40 Aligned_cols=163 Identities=17% Similarity=0.270 Sum_probs=113.7
Q ss_pred CCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCCh
Q 019128 26 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 105 (346)
Q Consensus 26 ~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (346)
+.+++++.+ +.||+++ =+++.+..+|+++-+=|..+|+.. +.
T Consensus 216 KTIvFitHD--LdEAlri-----G~rIaimkdG~ivQ~Gtp~eIl~~-------------------------------PA 257 (386)
T COG4175 216 KTIVFITHD--LDEALRI-----GDRIAIMKDGEIVQVGTPEEILLN-------------------------------PA 257 (386)
T ss_pred CeEEEEecC--HHHHHhc-----cceEEEecCCeEEEeCCHHHHHcC-------------------------------cc
Confidence 456666655 6677776 456788888999999999998763 11
Q ss_pred hhHHHHHHHHh---CCCCccccccCCCcee-EeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcC
Q 019128 106 NTFIETLRERM---FRPSLSTIIPEKSKVV-TISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN 180 (346)
Q Consensus 106 ~~~~~~~~~~~---~~~~v~~im~~~~~~~-~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~ 180 (346)
+++...+-+.. .-.+..++|.+ .+.. .-.+...-..++..+.....+.+.+++ .++.+|+++..+.. ..
T Consensus 258 ndYV~~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~-~~---- 331 (386)
T COG4175 258 NDYVRDFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLV-KA---- 331 (386)
T ss_pred HHHHHHHHhcCChhheeeHHHhhcc-cccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchh-cc----
Confidence 22222222211 12346788874 2222 222233445677778877776666777 67799999998886 21
Q ss_pred CCccccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHH
Q 019128 181 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 243 (346)
Q Consensus 181 ~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~ 243 (346)
.+..++.+++.++++.+.+....+... .++|+|++|+++|+|+...+++++.
T Consensus 332 ----------~~~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 332 ----------ALIDDVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALA 383 (386)
T ss_pred ----------cccccccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHh
Confidence 344678889999999999999988776 4889999999999999999998754
No 198
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.06 E-value=1.6e-05 Score=49.72 Aligned_cols=47 Identities=30% Similarity=0.478 Sum_probs=42.7
Q ss_pred CCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128 195 NPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241 (346)
Q Consensus 195 ~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~ 241 (346)
++.++++++++.++++.|.+.+.+.+||+++++++.|+++..++.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~ 47 (49)
T smart00116 1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA 47 (49)
T ss_pred CceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence 35678999999999999999999999999988999999999998764
No 199
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.02 E-value=6.8e-05 Score=71.16 Aligned_cols=111 Identities=11% Similarity=0.195 Sum_probs=89.0
Q ss_pred ceeEeCCC-CcHHHHHHHHHHcCCcEEEEEe---CCEEEEEeeHHHHHHHHHhcC-C---------------------Cc
Q 019128 130 KVVTISPT-DTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQN-L---------------------PA 183 (346)
Q Consensus 130 ~~~~v~~~-~~l~~~~~~m~~~~~~~l~V~d---~~~~~Giit~~dll~~~~~~~-~---------------------~~ 183 (346)
....++.+ .++.+...+|.+..++.+||+- ..+++|++.++|+...+.... . .+
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~ 636 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIP 636 (696)
T ss_pred hheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCC
Confidence 35556555 8999999999999999999874 678999999999874443211 0 01
Q ss_pred cccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128 184 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241 (346)
Q Consensus 184 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~ 241 (346)
.....+++|...|.++...++..-+++++++-+.+...|. ++|++.|+||.+|+++.
T Consensus 637 ~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 637 SRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRH 693 (696)
T ss_pred CCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHh
Confidence 1234667888899999999999999999999999988765 58999999999999875
No 200
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.02 E-value=3.2e-05 Score=73.30 Aligned_cols=129 Identities=17% Similarity=0.160 Sum_probs=90.6
Q ss_pred CeeecCC-ccHHHHHHHHHhCCcceeeee-e--CCeEEEEEehHHHHHHHHHHHHHHH-hhhhhHhhhhhhhhhccCCCC
Q 019128 28 PTFVLSD-TLAVEALQKMVQGKFRHLPVV-E--NGEVIALLDIAKCLYDAIARMERAA-EKGKAIAAAVEGVEKHWGTSI 102 (346)
Q Consensus 28 ~i~v~~~-~~l~ea~~~m~~~~~~~lpVv-d--~~~~vGivt~~dll~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~ 102 (346)
...++.+ +++.|...+|.+..++.+||+ + .++++|+++.+++...+......+. .....+ . .
T Consensus 558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~----~------f--- 624 (696)
T KOG0475|consen 558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI----Y------F--- 624 (696)
T ss_pred heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc----c------c---
Confidence 5555554 899999999999999999999 3 4789999999999876543221110 000000 0 0
Q ss_pred CChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128 103 SGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 173 (346)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll 173 (346)
..+. .......-.....+++|.. .++++...++.+-+++++.+-+.+.+.|..+|++.|+||.+|++
T Consensus 625 ~~~~--~~~~~~~~~~~~lk~il~~--tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~G~l~Giitkkd~l 691 (696)
T KOG0475|consen 625 NDPS--PSAVAGIPSRLDLKDILDM--TPFTVTDLTPMETVVDLFRKLGLRQILVTKNGILLGIITKKDCL 691 (696)
T ss_pred CCCC--ccccCCCCCCcCceeeccC--CcccccccCcHHHHHHHHHhhCceEEEEccCCeeEeeeehHHHH
Confidence 0000 0000111122346777765 78899999999999999999999999999999999999999998
No 201
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.89 E-value=4.2e-05 Score=47.80 Aligned_cols=45 Identities=27% Similarity=0.388 Sum_probs=40.8
Q ss_pred CeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHH
Q 019128 28 PTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYD 72 (346)
Q Consensus 28 ~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~ 72 (346)
+.++++++++.++++.|.+++++.+||++ +++++|+++..++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence 56789999999999999999999999998 5899999999998654
No 202
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.68 E-value=0.00061 Score=63.27 Aligned_cols=106 Identities=17% Similarity=0.127 Sum_probs=73.6
Q ss_pred CccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeee
Q 019128 120 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECA 199 (346)
Q Consensus 120 ~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v 199 (346)
++.++|.+ .......+.+ .+++. ++.+++.|++. |+++..+.. .+..... ...+.+ +.....++
T Consensus 275 ~a~~~m~~--~~~~~~~~~~--~~~~~---~~~~~~~~~~~----~~~~~~~~~-~~~~~~~---~~~~~~-~~~~~~~~ 338 (382)
T TIGR03415 275 TARSLMRP--LTDLEHVDGG--WCVSD---RRDTWLFTIDK----QVRRRDAKL-PVQAWAA---EQEVES-LEAAPTVI 338 (382)
T ss_pred eHHHHhcc--cccccccCcc--hhhhh---cccceeEeecc----ceecccchH-hHhhccc---ccchhh-hcccCccc
Confidence 56778854 2222222222 44433 67888888876 788877764 4333111 224555 55678899
Q ss_pred cCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHH
Q 019128 200 TIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAV 243 (346)
Q Consensus 200 ~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~ 243 (346)
++++++.+++..+.+.+.. ++|+|+ |+++|+|+..++++++.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 339 NPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred CCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHHHh
Confidence 9999999999998887765 888886 99999999999998754
No 203
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.48 E-value=0.001 Score=64.70 Aligned_cols=63 Identities=14% Similarity=0.155 Sum_probs=54.8
Q ss_pred CCCCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeeeC---CeEEEEEehHHHHHHHHH
Q 019128 13 LNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN---GEVIALLDIAKCLYDAIA 75 (346)
Q Consensus 13 ~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~---~~~vGivt~~dll~~~~~ 75 (346)
.....+.|+++|.+++..+..++|..|..+.+..+.++.+|++|+ .-++|-|..+.+...+-.
T Consensus 583 ~~~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~ 648 (931)
T KOG0476|consen 583 SSVHTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR 648 (931)
T ss_pred cceeEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence 355678999999999999999999999999998887999999983 468999999998876544
No 204
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.35 E-value=0.0005 Score=60.65 Aligned_cols=122 Identities=11% Similarity=0.108 Sum_probs=94.5
Q ss_pred cchhHHHHhhcCCCCcccccccccC--CCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHH
Q 019128 2 KDIATRVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARME 78 (346)
Q Consensus 2 ~d~~~~~~~~~~~~~~~~v~dim~~--~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~ 78 (346)
.||++.+++.-....-+++.++|.. ..+.-.+...-..+++.+.......+.+++ +++.+|+++..+....
T Consensus 258 ndYV~~Fv~~v~~~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~------ 331 (386)
T COG4175 258 NDYVRDFVRNVDRSRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA------ 331 (386)
T ss_pred HHHHHHHHhcCChhheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcc------
Confidence 4899999998888888999999983 222333344556789999998888888888 7889999998776432
Q ss_pred HHHhhhhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEE
Q 019128 79 RAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVT 158 (346)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~ 158 (346)
.+ ...+.++++++++.+.+..+.+.+. .++|+
T Consensus 332 ---------------------------------------------~~--~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVv 363 (386)
T COG4175 332 ---------------------------------------------AL--IDDVLTVDADTPLSEILARIRQAPC-PVAVV 363 (386)
T ss_pred ---------------------------------------------cc--cccccccCccchHHHHHHHHhcCCC-ceeEE
Confidence 11 1357789999999999988887765 56777
Q ss_pred e-CCEEEEEeeHHHHHHHHHh
Q 019128 159 V-ENKPRGILTSKDILMRVIS 178 (346)
Q Consensus 159 d-~~~~~Giit~~dll~~~~~ 178 (346)
| +++++|+++...++ .++.
T Consensus 364 de~~r~vG~i~~~~vl-~aL~ 383 (386)
T COG4175 364 DEDGRYVGIISRGELL-EALA 383 (386)
T ss_pred cCCCcEEEEecHHHHH-HHHh
Confidence 7 99999999999998 5443
No 205
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.32 E-value=0.0011 Score=61.49 Aligned_cols=120 Identities=9% Similarity=0.039 Sum_probs=80.6
Q ss_pred chhHHHHhhcCCCCcccccccccCCCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHh
Q 019128 3 DIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAE 82 (346)
Q Consensus 3 d~~~~~~~~~~~~~~~~v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~ 82 (346)
++++.++......+-+++.++|.+.......+.+ .|++. ++...+.|+|+ |+++..+...... .
T Consensus 259 ~~~~~~~~~~~~~~~l~a~~~m~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~-~------ 322 (382)
T TIGR03415 259 DYVADFVAHTNPLNVLTARSLMRPLTDLEHVDGG--WCVSD---RRDTWLFTIDK----QVRRRDAKLPVQA-W------ 322 (382)
T ss_pred HHHHHHhcccCcccceeHHHHhcccccccccCcc--hhhhh---cccceeEeecc----ceecccchHhHhh-c------
Confidence 4667777666667778999999543333333333 44444 78889999987 7887666432110 0
Q ss_pred hhhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCE
Q 019128 83 KGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENK 162 (346)
Q Consensus 83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~ 162 (346)
....++.+ +. ....++++++++.+++..+.+.+.. ++|+++|+
T Consensus 323 ---------------------------------~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~ 365 (382)
T TIGR03415 323 ---------------------------------AAEQEVES-LE--AAPTVINPDTLMRDVLAARHRTGGA-ILLVENGR 365 (382)
T ss_pred ---------------------------------ccccchhh-hc--ccCcccCCCCcHHHHHHHHhcCCCC-eEEeeCCe
Confidence 00011222 11 3577899999999999999887765 77888899
Q ss_pred EEEEeeHHHHHHH
Q 019128 163 PRGILTSKDILMR 175 (346)
Q Consensus 163 ~~Giit~~dll~~ 175 (346)
++|+|+..+++..
T Consensus 366 ~~g~~~~~~~~~~ 378 (382)
T TIGR03415 366 IVGVIGDDNIYHA 378 (382)
T ss_pred EEEEEeHHHHHHH
Confidence 9999999999833
No 206
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=97.00 E-value=0.0011 Score=63.47 Aligned_cols=130 Identities=15% Similarity=0.178 Sum_probs=98.9
Q ss_pred CCCccccccCCCceeEeCCCCcHH-HHHHHHHHcCCcEEEEEe--C-CEEEEEeeHHHHHHHHHhcCCCccccccccccc
Q 019128 118 RPSLSTIIPEKSKVVTISPTDTVL-MATKKMLELRLSSAVVTV--E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT 193 (346)
Q Consensus 118 ~~~v~~im~~~~~~~~v~~~~~l~-~~~~~m~~~~~~~l~V~d--~-~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~ 193 (346)
...++++|+|...+..++.+..+. +......+++++++||.+ . ..+.|.+....+ ++..........++...+.
T Consensus 203 ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~--~~~~~~~~~~~~~v~~~~~ 280 (498)
T KOG2118|consen 203 EKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLL--RLLQVEVPLEPLPVSESAL 280 (498)
T ss_pred HHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhh--hhhccccccccccchhhhc
Confidence 345889999988888888888876 556666789999999998 2 334444444444 4443222334678888888
Q ss_pred cCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHHHHHHccCCCC
Q 019128 194 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHAAVATVGNTAG 251 (346)
Q Consensus 194 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~~~~~i~~~~~ 251 (346)
.....+++++++.+.++.+...+.|.+.|.. ...-+|+++..|+ +....++.++.+
T Consensus 281 ~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~~l~~~-~~~~~ev~de~d 336 (498)
T KOG2118|consen 281 LRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVLTLEDL-EEVVKEVEDEED 336 (498)
T ss_pred cccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeEeccch-hhhcceeccccc
Confidence 9999999999999999999999988887777 6678999999999 776666665544
No 207
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=96.68 E-value=0.00054 Score=48.76 Aligned_cols=54 Identities=11% Similarity=0.175 Sum_probs=38.5
Q ss_pred HHhhcCCCCCCccccccccccccccCCCCCcc--cccCCCCCCCCCCceeEEEecCCCC-eEEEe
Q 019128 266 DSAMALSPNDDEEDNRSEGSLKFASEGADTAR--YLSYPSPSPGVPSAFAFKVQDNKGL-MHRFT 327 (346)
Q Consensus 266 ~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~V~d~~g~-~~~~~ 327 (346)
++.+.+..++++++|++|++...++++|..|+ .+.++.+. |+|.+++++ +.+++
T Consensus 20 ~~~~~~~l~~~~~~Tl~G~i~~~l~~iP~~Ge~~~i~~~~~~--------~~V~~~~~~rI~~V~ 76 (81)
T PF03471_consen 20 NELLGLDLPEEDYDTLGGLILEQLGRIPEVGERVEIELENYE--------FEVLEMDGRRIRKVR 76 (81)
T ss_dssp HHHHTS-TTTTTTSBHHHHHHHHHTSS--TTSEEEEEETTEE--------EEEEEEETTEEEEEE
T ss_pred HHHHCcCCCccchhhHHHHHHHHcCCCCCCCeEEEEEcCCEE--------EEEEEeeCCEEEEEE
Confidence 34445556667799999999999999999999 45555888 999999654 44433
No 208
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.63 E-value=0.022 Score=49.09 Aligned_cols=104 Identities=19% Similarity=0.094 Sum_probs=69.1
Q ss_pred eeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH--------HHHHhcCCC----ccccccccccccCC--
Q 019128 131 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL--------MRVISQNLP----ADSTLVEKVMTPNP-- 196 (346)
Q Consensus 131 ~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll--------~~~~~~~~~----~~~~~v~~~m~~~~-- 196 (346)
++.+.. .+.+|+++ .+++.|.++|+++-+=++.+++ ..++..+.. .....+.+.|.+..
T Consensus 189 ivfVTH--DidEA~kL-----adri~vm~~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~ 261 (309)
T COG1125 189 IVFVTH--DIDEALKL-----ADRIAVMDAGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPA 261 (309)
T ss_pred EEEEec--CHHHHHhh-----hceEEEecCCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccc
Confidence 444443 35676655 3578888899999999977776 233333211 11223444443222
Q ss_pred --eeecCCCCHHHHHHHhHhCCCceeEEEcCCCcEEEEEehHHHHHH
Q 019128 197 --ECATIDTPIVDALHIMHDGKFLHLPVVDRDGDVVDVVDVIHITHA 241 (346)
Q Consensus 197 --~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~~Giit~~Di~~~ 241 (346)
-..+......+++..+...+...+||+|++|+++|.||..+++..
T Consensus 262 ~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 262 DGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred cCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 233445566678888999999999999999999999999999863
No 209
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.43 E-value=0.16 Score=43.97 Aligned_cols=116 Identities=20% Similarity=0.195 Sum_probs=65.5
Q ss_pred CCeeecCCccHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhccCCCCCChh
Q 019128 27 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 106 (346)
Q Consensus 27 ~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 106 (346)
.++.|..+ +.||+++ -+++.|.++|+++-+=++.++++.-...+-. ..+|.+....
T Consensus 188 TivfVTHD--idEA~kL-----adri~vm~~G~i~Q~~~P~~il~~Pan~FV~----------------~f~g~~~~~~- 243 (309)
T COG1125 188 TIVFVTHD--IDEALKL-----ADRIAVMDAGEIVQYDTPDEILANPANDFVE----------------DFFGESERGL- 243 (309)
T ss_pred EEEEEecC--HHHHHhh-----hceEEEecCCeEEEeCCHHHHHhCccHHHHH----------------HHhccccccc-
Confidence 34444444 5566665 4567888889999999998887642211111 1111110000
Q ss_pred hHHHHHHHHhCCCCccccccCCC--ceeEeCCCCcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHH
Q 019128 107 TFIETLRERMFRPSLSTIIPEKS--KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 173 (346)
Q Consensus 107 ~~~~~~~~~~~~~~v~~im~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll 173 (346)
..+...++.+.|.+.. .--.+.......+++..+...+...+||+| +|+++|.+|..+++
T Consensus 244 -------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~ 306 (309)
T COG1125 244 -------RLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLL 306 (309)
T ss_pred -------cccchhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHh
Confidence 0001112222222210 011122334445677778888999999999 99999999999987
No 210
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=95.23 E-value=0.025 Score=40.28 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=27.8
Q ss_pred eEEEecCCCCeEEEecC-CCChHHHHHhhccc
Q 019128 313 AFKVQDNKGLMHRFTCG-MLPFPNFIEVTNYE 343 (346)
Q Consensus 313 ~~~V~d~~g~~~~~~~g-~~s~~~~~~~~~~~ 343 (346)
+||..+..|++|||+++ .-|+.+|++.|...
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~R 33 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEELRTLISQR 33 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHHHHHHHHHH
Confidence 59999999999999998 99999999988653
No 211
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=89.40 E-value=0.56 Score=46.43 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=57.5
Q ss_pred ccccccccccCCeeecCCCCHHHHHHHhHhCCCceeEEEcCCC--cEEEEEehHHHHHHHHHHccCCC
Q 019128 185 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRDG--DVVDVVDVIHITHAAVATVGNTA 250 (346)
Q Consensus 185 ~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g--~~~Giit~~Di~~~~~~~i~~~~ 250 (346)
...++++|.+++.++..+++..|+.+.+.....+.+|+||+.. .++|.|.++.+...+-..+.++.
T Consensus 587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ig~~~ 654 (931)
T KOG0476|consen 587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHIGPEP 654 (931)
T ss_pred EEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhcCccH
Confidence 3578999999999999999999999999888899999999644 78999999999988877776544
No 212
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=86.51 E-value=0.53 Score=45.47 Aligned_cols=129 Identities=20% Similarity=0.162 Sum_probs=86.2
Q ss_pred HhhcCCCCccccccccc--CCCeeecCCccHH-HHHHHHHhCCcceeeeeeC--CeEEEEEehHHHHHHHHHHHHHHHhh
Q 019128 9 IARELNLEETPVSKVMT--RNPTFVLSDTLAV-EALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEK 83 (346)
Q Consensus 9 ~~~~~~~~~~~v~dim~--~~~i~v~~~~~l~-ea~~~m~~~~~~~lpVvd~--~~~vGivt~~dll~~~~~~~~~~~~~ 83 (346)
+.....+.+..++++|+ .++..++.+..+. +......+++++++||.+. ...+|.+-...++....
T Consensus 195 i~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~--------- 265 (498)
T KOG2118|consen 195 ITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQ--------- 265 (498)
T ss_pred hhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhc---------
Confidence 44556788999999998 4667777788777 5666667999999999983 22333322122222100
Q ss_pred hhhHhhhhhhhhhccCCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCEE
Q 019128 84 GKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKP 163 (346)
Q Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~~ 163 (346)
....+...++...+. ..+..+++++++.+.++.+.+.+.+.+.|.....-
T Consensus 266 ----------------------------~~~~~~~~~v~~~~~--~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~~~~ 315 (498)
T KOG2118|consen 266 ----------------------------VEVPLEPLPVSESAL--LRLPLVPENMPLLDLLNEFQKGKSHMAVVRNGHVD 315 (498)
T ss_pred ----------------------------cccccccccchhhhc--cccccCCCcccHHHHHHHHhhhhceeEEEecCCcc
Confidence 000122233444444 36778899999999999999988888887776667
Q ss_pred EEEeeHHHHHHHHH
Q 019128 164 RGILTSKDILMRVI 177 (346)
Q Consensus 164 ~Giit~~dll~~~~ 177 (346)
+++++..|+ ....
T Consensus 316 ~~~~~l~~~-~~~~ 328 (498)
T KOG2118|consen 316 IFVLTLEDL-EEVV 328 (498)
T ss_pred eeeEeccch-hhhc
Confidence 789999987 4444
No 213
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=72.31 E-value=10 Score=38.09 Aligned_cols=92 Identities=13% Similarity=0.140 Sum_probs=56.0
Q ss_pred HHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCcccccccccc----------ccCCeeecCCCCHHHH
Q 019128 140 VLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVM----------TPNPECATIDTPIVDA 208 (346)
Q Consensus 140 l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m----------~~~~~~v~~~~~l~~~ 208 (346)
+....+.+...+ ..++++| +|.++.+....+++..+...+..+...-.++.+ ...++.|.......+
T Consensus 61 l~~l~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnaig~al~~~~pv~v~g~EH~~~- 138 (638)
T PRK11388 61 LEDAWEYMADRE-CALLILDETGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAAISGQPVKTMGDQHFKQ- 138 (638)
T ss_pred HHHHHHHhcCCC-cEEEEEcCCceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHHHHHHhcCCceEEecHHHHHH-
Confidence 445555555555 5778888 999999998888764333222221111011111 245555655554444
Q ss_pred HHHhHhCCCceeEEEcCCCcEEEEEeh
Q 019128 209 LHIMHDGKFLHLPVVDRDGDVVDVVDV 235 (346)
Q Consensus 209 ~~~m~~~~~~~~~Vvd~~g~~~Giit~ 235 (346)
.+.......+||.|.+|+++|+|+.
T Consensus 139 --~~~~~~c~aaPI~d~~G~liGvl~l 163 (638)
T PRK11388 139 --ALHNWAFCATPVFDSKGRLTGTIAL 163 (638)
T ss_pred --hccCceEEeeEEEcCCCCEEEEEEE
Confidence 3444566789999999999999963
No 214
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=57.22 E-value=24 Score=24.54 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=19.4
Q ss_pred CceeEEEcCCCcEEEEEehHHHHHH
Q 019128 217 FLHLPVVDRDGDVVDVVDVIHITHA 241 (346)
Q Consensus 217 ~~~~~Vvd~~g~~~Giit~~Di~~~ 241 (346)
.+.+-|+|++|...|+++..+.++.
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~ 36 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRL 36 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHH
T ss_pred CCEEEEECCCCcEeceEEHHHHHHH
Confidence 4567889999999999999998875
No 215
>PF14044 NETI: NETI protein
Probab=45.49 E-value=27 Score=22.57 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.0
Q ss_pred eeecCCCCHHHHHHHhHhCCCceeEE
Q 019128 197 ECATIDTPIVDALHIMHDGKFLHLPV 222 (346)
Q Consensus 197 ~~v~~~~~l~~~~~~m~~~~~~~~~V 222 (346)
+.|.++.|+.++++.|.+.|+ .||
T Consensus 2 FeV~enETI~~CL~RM~~eGY--~Pv 25 (57)
T PF14044_consen 2 FEVEENETISDCLARMKKEGY--MPV 25 (57)
T ss_pred eeccCCCcHHHHHHHHHHcCC--Cce
Confidence 357789999999999999987 444
No 216
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=44.54 E-value=43 Score=32.45 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=33.4
Q ss_pred cHHHHHHHHHhCCcceeeeeeCCeEEEEEehHHHHHHHHH
Q 019128 36 LAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIA 75 (346)
Q Consensus 36 ~l~ea~~~m~~~~~~~lpVvd~~~~vGivt~~dll~~~~~ 75 (346)
-+..+++...+.+-.-++|+++++++|++..+|+++-.+.
T Consensus 414 ~l~~~~~~vs~~GGTPL~V~~~~~~~GVI~LkDivK~Gi~ 453 (681)
T COG2216 414 DLDAAVDEVSRLGGTPLVVVENGRILGVIYLKDIVKPGIK 453 (681)
T ss_pred HHHHHHHHHHhcCCCceEEEECCEEEEEEEehhhcchhHH
Confidence 3667777777788888999999999999999999886553
No 217
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=40.84 E-value=16 Score=24.55 Aligned_cols=29 Identities=28% Similarity=0.494 Sum_probs=21.3
Q ss_pred CCCCCCCCCceeEEEecCCCCeEEEecCCCChH
Q 019128 302 PSPSPGVPSAFAFKVQDNKGLMHRFTCGMLPFP 334 (346)
Q Consensus 302 ~~~~~~~~~~~~~~V~d~~g~~~~~~~g~~s~~ 334 (346)
....+..+..+..+|+|.+|++ +|.++|+
T Consensus 36 k~~~~~~~G~WrV~V~~~~G~~----l~~~~F~ 64 (66)
T PF11141_consen 36 KQNFPDQPGDWRVEVVDEDGQV----LGSLRFS 64 (66)
T ss_pred eecCCCCCcCEEEEEEcCCCCE----EEEEEEE
Confidence 3333345677789999999999 8877663
No 218
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=40.71 E-value=29 Score=26.10 Aligned_cols=17 Identities=53% Similarity=0.827 Sum_probs=13.1
Q ss_pred eeEEEcCCCcEEEEEeh
Q 019128 219 HLPVVDRDGDVVDVVDV 235 (346)
Q Consensus 219 ~~~Vvd~~g~~~Giit~ 235 (346)
..||.|++|+++|+|+.
T Consensus 93 ~~PV~d~~g~viG~V~V 109 (116)
T PF14827_consen 93 FAPVYDSDGKVIGVVSV 109 (116)
T ss_dssp EEEEE-TTS-EEEEEEE
T ss_pred EEeeECCCCcEEEEEEE
Confidence 58999999999999964
No 219
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=33.90 E-value=82 Score=31.72 Aligned_cols=49 Identities=12% Similarity=0.185 Sum_probs=30.4
Q ss_pred cccCCCeeecCCcc-HHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHH
Q 019128 23 VMTRNPTFVLSDTL-AVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYD 72 (346)
Q Consensus 23 im~~~~i~v~~~~~-l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~ 72 (346)
.+.++-..+....+ +.+....|...+ ..++++| +|.++.+....+++..
T Consensus 46 ~~~~~~~ll~~a~~~l~~l~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~ 96 (638)
T PRK11388 46 IYRRKKALLTLGQAALEDAWEYMADRE-CALLILDETGCILSRNGDPQTLQQ 96 (638)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhcCCC-cEEEEEcCCceEEEEeCCHHHHHH
Confidence 33333333444455 444445555555 6788889 8999998887776654
No 220
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=32.11 E-value=76 Score=30.85 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=31.7
Q ss_pred CcHHHHHHHHHHcCCcEEEEEeCCEEEEEeeHHHHH
Q 019128 138 DTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 173 (346)
Q Consensus 138 ~~l~~~~~~m~~~~~~~l~V~d~~~~~Giit~~dll 173 (346)
..+..+.+...+.|-..++|++++++.|+|..+|++
T Consensus 413 ~~l~~~~~~vs~~GGTPL~V~~~~~~~GVI~LkDiv 448 (681)
T COG2216 413 EDLDAAVDEVSRLGGTPLVVVENGRILGVIYLKDIV 448 (681)
T ss_pred HHHHHHHHHHHhcCCCceEEEECCEEEEEEEehhhc
Confidence 456777788888888899999999999999999998
No 221
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=30.00 E-value=2.1e+02 Score=21.05 Aligned_cols=95 Identities=14% Similarity=0.078 Sum_probs=50.1
Q ss_pred CcHHHHHHHHHHcCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCC---HHHHHHHhH
Q 019128 138 DTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTP---IVDALHIMH 213 (346)
Q Consensus 138 ~~l~~~~~~m~~~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~---l~~~~~~m~ 213 (346)
.++.+|++...+.+---++... ++.. ..+.+.+..+ . ...+.+.+..+.+.+..+.+ ..+....+.
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~----~c~~~~~~vl-~-----~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~ 73 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEF----DSQVLNRDLW-S-----NESVKEFIRENFIFWQCDIDSSEGQRFLQSYK 73 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcc----hHHHHHHHHc-C-----CHHHHHHHHhCEEEEEecCCCccHHHHHHHhC
Confidence 4677888877766543333233 2221 1111111111 1 23455555555554444432 334444555
Q ss_pred hCCCceeEEEcC-CCcEE----EEEehHHHHHHH
Q 019128 214 DGKFLHLPVVDR-DGDVV----DVVDVIHITHAA 242 (346)
Q Consensus 214 ~~~~~~~~Vvd~-~g~~~----Giit~~Di~~~~ 242 (346)
..++..+.++|. +|+++ |.++..+++..+
T Consensus 74 ~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L 107 (114)
T cd02958 74 VDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQL 107 (114)
T ss_pred ccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHH
Confidence 566777888898 78665 666777777653
No 222
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=29.58 E-value=64 Score=25.99 Aligned_cols=54 Identities=9% Similarity=0.038 Sum_probs=32.4
Q ss_pred CCCCccccccccc---CCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEeh
Q 019128 13 LNLEETPVSKVMT---RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDI 66 (346)
Q Consensus 13 ~~~~~~~v~dim~---~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~ 66 (346)
.+++..++.|+|. .++..++++--+.--+-.....---++.-.| +|+++|.+-.
T Consensus 2 m~iR~ar~~DL~~mQ~~Nl~~lpENyqmkyylyh~lswp~lSyVA~D~~gkiVGYvlA 59 (193)
T KOG3235|consen 2 MNIRRARPDDLLEMQHCNLLNLPENYQMKYYLYHGLSWPQLSYVAEDENGKIVGYVLA 59 (193)
T ss_pred cccccCCHHHHHHhhhcccccCcHHHhHHHHHHhhcccccceEEEEcCCCcEEEEeee
Confidence 3567778888886 4566666665554444433333222333345 7999999864
No 223
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=24.67 E-value=2.1e+02 Score=27.96 Aligned_cols=84 Identities=17% Similarity=0.220 Sum_probs=42.0
Q ss_pred CcHHHHHHHHHH-cCCcEEEEEe-CCEEEEEeeHHHHHHHHHhcCCCccccccccccccCCeeecCCCCHHHHHHHhHhC
Q 019128 138 DTVLMATKKMLE-LRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDG 215 (346)
Q Consensus 138 ~~l~~~~~~m~~-~~~~~l~V~d-~~~~~Giit~~dll~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~ 215 (346)
..+....+.+.+ ++...+.|.| +| +=+-++..= +. +.......-..++.-..++....-++..+++.
T Consensus 73 ~~iq~~~~~i~~~t~a~fIVV~d~~g--IR~~HP~pe--rI---Gkp~~ggde~a~~~G~~yvS~~kGslg~s~R~---- 141 (537)
T COG3290 73 ARIQAIAEAIRSITDADFIVVGDMKG--IRLTHPNPE--RI---GKPFQGGDEEAALAGESYVSTAKGSLGKSLRA---- 141 (537)
T ss_pred hhHHHHHHHHHhhcCceEEEEecCCc--ceecCCChH--Hh---CCCccCCCHHHHhCCceeEEEeeccchhhhee----
Confidence 556666666665 4666666666 43 222332110 00 11110111122232233333344455554433
Q ss_pred CCceeEEEcCCCcEEEEEeh
Q 019128 216 KFLHLPVVDRDGDVVDVVDV 235 (346)
Q Consensus 216 ~~~~~~Vvd~~g~~~Giit~ 235 (346)
..||.|++|+.+|+|+.
T Consensus 142 ---~~PI~d~~g~~IGvVsV 158 (537)
T COG3290 142 ---KVPIFDEDGKQIGVVSV 158 (537)
T ss_pred ---ecceECCCCCEEEEEEE
Confidence 38999999999999954
No 224
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=22.94 E-value=5.3e+02 Score=24.43 Aligned_cols=121 Identities=15% Similarity=0.118 Sum_probs=61.2
Q ss_pred ccccccCCCeeecCCccHHHHHHHHHhCCcceeeeee-CCeEEEEEehHHHHHHHHHHHHHHHhhhhhHhhhhhhhhhcc
Q 019128 20 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHW 98 (346)
Q Consensus 20 v~dim~~~~i~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (346)
-+++|.-++..+..-..+.+|+..|.+. .+..+| -|+ +..|-.. +..+.... .....++..+
T Consensus 255 Ya~im~vp~~vv~~~~el~~ai~~l~~~---d~ILVDTaGr-----s~~D~~~--i~el~~~~-------~~~~~i~~~L 317 (407)
T COG1419 255 YADIMGVPLEVVYSPKELAEAIEALRDC---DVILVDTAGR-----SQYDKEK--IEELKELI-------DVSHSIEVYL 317 (407)
T ss_pred HHHHhCCceEEecCHHHHHHHHHHhhcC---CEEEEeCCCC-----CccCHHH--HHHHHHHH-------hccccceEEE
Confidence 3577877777777777788888888876 445567 554 1112111 11111111 0111111111
Q ss_pred CCCCCChhhHHHHHHHHhCCCCccccccCCCceeEeCCCCcHHHHHHHHHHcCCcEEEEEeCCE
Q 019128 99 GTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENK 162 (346)
Q Consensus 99 g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V~d~~~ 162 (346)
-.+.-........+-+.+..-++..++ +.-+++.+++.+.+.+|.+++.....|+++.+
T Consensus 318 vlsat~K~~dlkei~~~f~~~~i~~~I-----~TKlDET~s~G~~~s~~~e~~~PV~YvT~GQ~ 376 (407)
T COG1419 318 VLSATTKYEDLKEIIKQFSLFPIDGLI-----FTKLDETTSLGNLFSLMYETRLPVSYVTNGQR 376 (407)
T ss_pred EEecCcchHHHHHHHHHhccCCcceeE-----EEcccccCchhHHHHHHHHhCCCeEEEeCCCC
Confidence 111112222233333323222333322 23377888899999999988877777776433
No 225
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=22.94 E-value=55 Score=24.05 Aligned_cols=20 Identities=35% Similarity=0.378 Sum_probs=16.5
Q ss_pred HhCCCceeEEEcCCCcEEEE
Q 019128 213 HDGKFLHLPVVDRDGDVVDV 232 (346)
Q Consensus 213 ~~~~~~~~~Vvd~~g~~~Gi 232 (346)
...+...-||+|.+|+++||
T Consensus 101 ~~~G~SGgpv~~~~G~vvGi 120 (120)
T PF13365_consen 101 TRPGSSGGPVFDSDGRVVGI 120 (120)
T ss_dssp -STTTTTSEEEETTSEEEEE
T ss_pred cCCCcEeHhEECCCCEEEeC
Confidence 34577789999999999997
No 226
>COG1956 GAF domain-containing protein [Signal transduction mechanisms]
Probab=22.74 E-value=89 Score=25.19 Aligned_cols=17 Identities=35% Similarity=0.829 Sum_probs=14.7
Q ss_pred eeeeeeCCeEEEEEehH
Q 019128 51 HLPVVENGEVIALLDIA 67 (346)
Q Consensus 51 ~lpVvd~~~~vGivt~~ 67 (346)
.+||..+|+++|++++.
T Consensus 118 VvPi~~~g~~iGvlDiD 134 (163)
T COG1956 118 VVPIFKDGKLIGVLDID 134 (163)
T ss_pred EEEEEECCEEEEEEecC
Confidence 67999999999999863
No 227
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=22.41 E-value=85 Score=25.84 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=22.4
Q ss_pred CceeEEEcCCCcEEEEEehHHHHHHH
Q 019128 217 FLHLPVVDRDGDVVDVVDVIHITHAA 242 (346)
Q Consensus 217 ~~~~~Vvd~~g~~~Giit~~Di~~~~ 242 (346)
...+-|+|++|...|+++..+.++.+
T Consensus 19 ~~~Vrli~~dG~~lgv~~~~eAl~~A 44 (177)
T PRK00028 19 AREVRLIGDDGEQLGIVSTREALELA 44 (177)
T ss_pred CCEEEEECCCCcCCCceeHHHHHHHH
Confidence 45688999999999999999988764
No 228
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=20.64 E-value=87 Score=25.45 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=22.3
Q ss_pred CceeEEEcCCCcEEEEEehHHHHHHH
Q 019128 217 FLHLPVVDRDGDVVDVVDVIHITHAA 242 (346)
Q Consensus 217 ~~~~~Vvd~~g~~~Giit~~Di~~~~ 242 (346)
.+.+-|+|++|...|+++..+.++.+
T Consensus 7 ~~~Vrli~~dG~~lgv~~~~eAl~~A 32 (165)
T TIGR00168 7 FNEVRLIDENGEQLGIVSREEALEIA 32 (165)
T ss_pred CCEEEEECCCCcCCCcccHHHHHHHH
Confidence 45688999999999999999988764
Done!