BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019129
(346 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 194 bits (493), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 174/315 (55%), Gaps = 21/315 (6%)
Query: 31 PGLVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTR 90
PGL +FY TCP+AE I+RE V+ ++ A LR FHDC VQ CDAS+LLD +
Sbjct: 7 PGLSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSA 66
Query: 91 KTLSEKEMDRSFGMR--NFRYIENIKEAVERECPG-VVSCADILVLSGRDGVVALGGPYI 147
E++ + +R F+ + +I++ +EREC G VVSC+DIL L+ RD VV GGP
Sbjct: 67 TGPGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDY 126
Query: 148 PLKTGRRDGRK--SRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSI 205
+ GRRD R S ++L LP + ++ +L +G+DA LV +
Sbjct: 127 RVPLGRRDSRSFASTQDVLSD-LPGPSSNVQSLLALLGRLGLDATDLVTI---------- 175
Query: 206 SSGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPM 265
SG H++G HC RL+P DP ++P + + CP D + V VR TP
Sbjct: 176 -SGGHTIGLAHCSSFEDRLFPRPDPTISPTFLSRLKRTCPAKGTDRRTVLDVR----TPN 230
Query: 266 VLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPL 325
V DN YY ++++ +GL + D L T+ TRP V++ A+SQ FF++F +I + +
Sbjct: 231 VFDNKYYIDLVNREGLFVSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVR 290
Query: 326 TGTKGEIRKVCNLAN 340
T +GE+R+ C++ N
Sbjct: 291 TSDQGEVRRNCSVRN 305
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/308 (34%), Positives = 150/308 (48%), Gaps = 22/308 (7%)
Query: 37 FYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEK 96
FY TCP A I+R ++ + S +R FHDC V CDAS+LLD T SEK
Sbjct: 7 FYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGSIQSEK 66
Query: 97 EMDRSF-GMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRD 155
+ R F ++NIK A+E CPGVVSC+D+L L+ V GGP + GRRD
Sbjct: 67 NAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVLLGRRD 126
Query: 156 GRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRT 215
+ +P +S+S + +F+A+G++ LVAL SG+H+ GR
Sbjct: 127 SLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVAL-----------SGAHTFGRA 175
Query: 216 HCVKLVHRLY-----PEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNN 270
C +RL+ DP LN + + CP + A D TP DNN
Sbjct: 176 RCGVFNNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQ---NGSASTITNLDLSTPDAFDNN 232
Query: 271 YYRNILDNKGLMMVDHQL--ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGT 328
Y+ N+ N GL+ D +L T T V A +Q FF+ F++++ + +PLTG+
Sbjct: 233 YFANLQSNDGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGS 292
Query: 329 KGEIRKVC 336
GEIR C
Sbjct: 293 NGEIRLDC 300
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 177 bits (449), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 105/316 (33%), Positives = 152/316 (48%), Gaps = 22/316 (6%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY TCP A ++R V+ ++ S +R FHDC V CDAS+LLD++
Sbjct: 4 LNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGSI 63
Query: 93 LSEKEMD-RSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKT 151
+SEK + R F ++NIK A+E CPGVVSC D+L L+ + V GGP +
Sbjct: 64 ISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVDL 123
Query: 152 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHS 211
GRRD + +P +S + +F+A+G++ LVAL SG+H+
Sbjct: 124 GRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVAL-----------SGAHT 172
Query: 212 VGRTHCVKLVHRLY-----PEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMV 266
GR C +RL+ DP LN + + CP + D TP
Sbjct: 173 FGRATCGVFSNRLFNFSGKGNPDPTLNTTLLSTLQELCPQ---KGRGSGSTNLDLSTPDA 229
Query: 267 LDNNYYRNILDNKGLMMVDHQL--ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNP 324
DNNY+ N+ N GL+ D +L T T V A +Q FF+ F++++ + +P
Sbjct: 230 FDNNYFTNLQSNNGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISP 289
Query: 325 LTGTKGEIRKVCNLAN 340
LTG+ GEIR C N
Sbjct: 290 LTGSSGEIRLDCKKTN 305
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 174 bits (441), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 143/309 (46%), Gaps = 17/309 (5%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L NFY CP A I+ V + S LR FHDC VQ CDAS+LLD T
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 93 LSEKEMD-RSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKT 151
EK + +R F I+ IK VE CPGVVSCADIL ++ RD VVALGG +
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121
Query: 152 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHS 211
GRRD + LP ++S ++ F+ G LV L SG+H+
Sbjct: 122 GRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTL-----------SGAHT 170
Query: 212 VGRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNY 271
+G+ C R+Y E + ++P + + CP D + D TP DN Y
Sbjct: 171 IGQAQCTAFRTRIYNESN--IDPTYAKSLQANCPSVGGDTNLSPF---DVTTPNKFDNAY 225
Query: 272 YRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGE 331
Y N+ + KGL+ D QL T V + + F +F A+ + +PLTGT G+
Sbjct: 226 YINLRNKKGLLHSDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQ 285
Query: 332 IRKVCNLAN 340
IR C N
Sbjct: 286 IRTNCRKTN 294
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 112/330 (33%), Positives = 162/330 (49%), Gaps = 37/330 (11%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 62 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 118
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGLSYYYWSISS 207
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL S
Sbjct: 119 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVAL-----------S 167
Query: 208 GSHSVGRTHCVKLVHRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRG 262
G H+ G+ C ++ RLY DP LN ++ + CP + V D
Sbjct: 168 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLR 224
Query: 263 TPMVLDNNYYRNILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAIT 317
TP + DN YY N+ + KGL+ D +L ATD T P V+ A S FF F A+
Sbjct: 225 TPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMD 282
Query: 318 LLSENNPLTGTKGEIRKVCNLANK---LHD 344
+ PLTGT+G+IR C + N LHD
Sbjct: 283 RMGNITPLTGTQGQIRLNCRVVNSNSLLHD 312
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 110/324 (33%), Positives = 159/324 (49%), Gaps = 34/324 (10%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 62 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 118
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGLSYYYWSISS 207
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL S
Sbjct: 119 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVAL-----------S 167
Query: 208 GSHSVGRTHCVKLVHRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRG 262
G HS G+ C ++ RLY DP LN ++ + CP + V D
Sbjct: 168 GGHSFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLR 224
Query: 263 TPMVLDNNYYRNILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAIT 317
TP + DN YY N+ + KGL+ D +L ATD T P V+ A S FF F A+
Sbjct: 225 TPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMD 282
Query: 318 LLSENNPLTGTKGEIRKVCNLANK 341
+ PLTGT+G+IR C + N
Sbjct: 283 RMGNITPLTGTQGQIRLNCRVVNS 306
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 109/324 (33%), Positives = 159/324 (49%), Gaps = 34/324 (10%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 63 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 119
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGLSYYYWSISS 207
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL S
Sbjct: 120 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVAL-----------S 168
Query: 208 GSHSVGRTHCVKLVHRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRG 262
G H+ G+ C ++ RLY DP LN ++ + CP + V D
Sbjct: 169 GGHTFGKNQCRSIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLR 225
Query: 263 TPMVLDNNYYRNILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAIT 317
TP + DN YY N+ + KGL+ D +L ATD T P V+ A S FF F A+
Sbjct: 226 TPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMD 283
Query: 318 LLSENNPLTGTKGEIRKVCNLANK 341
+ PLTGT+G+IR C + N
Sbjct: 284 RMGNITPLTGTQGQIRLNCRVVNS 307
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 109/324 (33%), Positives = 159/324 (49%), Gaps = 34/324 (10%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 63 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 119
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGLSYYYWSISS 207
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL S
Sbjct: 120 VPLGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVAL-----------S 168
Query: 208 GSHSVGRTHCVKLVHRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRG 262
G H+ G+ C ++ RLY DP LN ++ + CP + V D
Sbjct: 169 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLR 225
Query: 263 TPMVLDNNYYRNILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAIT 317
TP + DN YY N+ + KGL+ D +L ATD T P V+ A S FF F A+
Sbjct: 226 TPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMD 283
Query: 318 LLSENNPLTGTKGEIRKVCNLANK 341
+ PLTGT+G+IR C + N
Sbjct: 284 RMGNITPLTGTQGQIRLNCRVVNS 307
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 164 bits (416), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 109/324 (33%), Positives = 159/324 (49%), Gaps = 34/324 (10%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 63 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 119
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGLSYYYWSISS 207
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL S
Sbjct: 120 VPLGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVAL-----------S 168
Query: 208 GSHSVGRTHCVKLVHRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRG 262
G H+ G+ C ++ RLY DP LN ++ + CP + V D
Sbjct: 169 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLR 225
Query: 263 TPMVLDNNYYRNILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAIT 317
TP + DN YY N+ + KGL+ D +L ATD T P V+ A S FF F A+
Sbjct: 226 TPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMD 283
Query: 318 LLSENNPLTGTKGEIRKVCNLANK 341
+ PLTGT+G+IR C + N
Sbjct: 284 RMGNITPLTGTQGQIRLNCRVVNS 307
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 164 bits (416), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 109/324 (33%), Positives = 159/324 (49%), Gaps = 34/324 (10%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 62 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 118
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGLSYYYWSISS 207
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL S
Sbjct: 119 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVAL-----------S 167
Query: 208 GSHSVGRTHCVKLVHRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRG 262
G H+ G+ C ++ RLY DP LN ++ + CP + V D
Sbjct: 168 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLR 224
Query: 263 TPMVLDNNYYRNILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAIT 317
TP + DN YY N+ + KGL+ D +L ATD T P V+ A S FF F A+
Sbjct: 225 TPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMD 282
Query: 318 LLSENNPLTGTKGEIRKVCNLANK 341
+ PLTGT+G+IR C + N
Sbjct: 283 RMGNITPLTGTQGQIRLNCRVVNS 306
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 164 bits (416), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 109/324 (33%), Positives = 159/324 (49%), Gaps = 34/324 (10%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 63 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 119
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGLSYYYWSISS 207
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL S
Sbjct: 120 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVAL-----------S 168
Query: 208 GSHSVGRTHCVKLVHRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRG 262
G H+ G+ C ++ RLY DP LN ++ + CP + V D
Sbjct: 169 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDMDLR 225
Query: 263 TPMVLDNNYYRNILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAIT 317
TP + DN YY N+ + KGL+ D +L ATD T P V+ A S FF F A+
Sbjct: 226 TPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMD 283
Query: 318 LLSENNPLTGTKGEIRKVCNLANK 341
+ PLTGT+G+IR C + N
Sbjct: 284 RMGNITPLTGTQGQIRLNCRVVNS 307
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 164 bits (416), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 109/324 (33%), Positives = 159/324 (49%), Gaps = 34/324 (10%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 62 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 118
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGLSYYYWSISS 207
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL S
Sbjct: 119 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVAL-----------S 167
Query: 208 GSHSVGRTHCVKLVHRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRG 262
G H+ G+ C ++ RLY DP LN ++ + CP + V D
Sbjct: 168 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLR 224
Query: 263 TPMVLDNNYYRNILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAIT 317
TP + DN YY N+ + KGL+ D +L ATD T P V+ A S FF F A+
Sbjct: 225 TPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMD 282
Query: 318 LLSENNPLTGTKGEIRKVCNLANK 341
+ PLTGT+G+IR C + N
Sbjct: 283 RMGNITPLTGTQGQIRLNCRVVNS 306
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 164 bits (416), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 109/324 (33%), Positives = 159/324 (49%), Gaps = 34/324 (10%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 63 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 119
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGLSYYYWSISS 207
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL S
Sbjct: 120 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVAL-----------S 168
Query: 208 GSHSVGRTHCVKLVHRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRG 262
G H+ G+ C ++ RLY DP LN ++ + CP + V D
Sbjct: 169 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLR 225
Query: 263 TPMVLDNNYYRNILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAIT 317
TP + DN YY N+ + KGL+ D +L ATD T P V+ A S FF F A+
Sbjct: 226 TPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMD 283
Query: 318 LLSENNPLTGTKGEIRKVCNLANK 341
+ PLTGT+G+IR C + N
Sbjct: 284 RMGNITPLTGTQGQIRLNCRVVNS 307
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 164 bits (414), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 104/315 (33%), Positives = 153/315 (48%), Gaps = 18/315 (5%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L + FY +CP AE ++++ V + + A +R FHDC V+ CDAS+LLDST
Sbjct: 2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61
Query: 93 LSEKE-MDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKT 151
+EK+ + + +R F I K AVE CP VSCADIL + RD G + +
Sbjct: 62 TAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPS 121
Query: 152 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHS 211
GRRDG S A +P + + ++ FA + A +V L SG+HS
Sbjct: 122 GRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTL-----------SGAHS 170
Query: 212 VGRTHCVKLVHRLY-----PEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMV 266
+G HC +RLY +DP L+P + + + CP + V D TP V
Sbjct: 171 IGVAHCSSFTNRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPIT-VSLDIITPSV 229
Query: 267 LDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLT 326
LDN YY + GL+ D L T+ VK A + + +F++A+ + + LT
Sbjct: 230 LDNMYYTGVQLTLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLT 289
Query: 327 GTKGEIRKVCNLANK 341
GT+GEIR C++ N
Sbjct: 290 GTQGEIRTNCSVVNS 304
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/321 (33%), Positives = 155/321 (48%), Gaps = 40/321 (12%)
Query: 36 NFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSE 95
+ Y +CP I+R+QV + K A S +R FHDC V CDASLLLD SE
Sbjct: 5 DIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGAD---SE 61
Query: 96 K-EMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRR 154
K + R F I+ IK AVE CPGVVSCADIL L+ RD VV GGP + GR+
Sbjct: 62 KLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVALGRK 121
Query: 155 DGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGR 214
DG + LP + + ++ +F A+ ++ +VAL SG+H+ G+
Sbjct: 122 DGLVANQNSANN-LPSPFEPLDAIIAKFVAVNLNITDVVAL-----------SGAHTFGQ 169
Query: 215 THCVKLVHRLYPEVDPALNPDH------VPHMLHKCP----DAIPDPKAVQYVRNDRGTP 264
C +RL+ A NPD + ++ CP I P DR T
Sbjct: 170 AKCAVFSNRLF-NFTGAGNPDATLETSLLSNLQTVCPLGGNSNITAPL-------DRSTT 221
Query: 265 MVLDNNYYRNILDNKGLMMVDHQLATD----KRTRPYVKKMAKSQDYFFKEFSRAITLLS 320
DNNY++N+L+ KGL+ D L + T+ V+ ++SQ FF++F+ A ++
Sbjct: 222 DTFDNNYFKNLLEGKGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCA--MIR 279
Query: 321 ENNPLTGTKGEIRKVCNLANK 341
N G GE+R C + N
Sbjct: 280 MGNISNGASGEVRTNCRVINN 300
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 108/324 (33%), Positives = 158/324 (48%), Gaps = 34/324 (10%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 62 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 118
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGLSYYYWSISS 207
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL
Sbjct: 119 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALY----------- 167
Query: 208 GSHSVGRTHCVKLVHRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRG 262
G H+ G+ C ++ RLY DP LN ++ + CP + V D
Sbjct: 168 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLR 224
Query: 263 TPMVLDNNYYRNILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAIT 317
TP + DN YY N+ + KGL+ D +L ATD T P V+ A S FF F A+
Sbjct: 225 TPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMD 282
Query: 318 LLSENNPLTGTKGEIRKVCNLANK 341
+ PLTGT+G+IR C + N
Sbjct: 283 RMGNITPLTGTQGQIRLNCRVVNS 306
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 161 bits (408), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 108/324 (33%), Positives = 158/324 (48%), Gaps = 34/324 (10%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR F DC V CDAS+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTSF 62
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 63 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 119
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGLSYYYWSISS 207
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL S
Sbjct: 120 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVAL-----------S 168
Query: 208 GSHSVGRTHCVKLVHRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRG 262
G H+ G+ C ++ RLY DP LN ++ + CP + V D
Sbjct: 169 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLR 225
Query: 263 TPMVLDNNYYRNILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAIT 317
TP + DN YY N+ + KGL+ D +L ATD T P V+ A S FF F A+
Sbjct: 226 TPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMD 283
Query: 318 LLSENNPLTGTKGEIRKVCNLANK 341
+ PLTGT+G+IR C + N
Sbjct: 284 RMGNITPLTGTQGQIRLNCRVVNS 307
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/324 (33%), Positives = 157/324 (48%), Gaps = 34/324 (10%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S L F DC V CDAS+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTSF 61
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 62 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 118
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGLSYYYWSISS 207
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL S
Sbjct: 119 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVAL-----------S 167
Query: 208 GSHSVGRTHCVKLVHRLYPEV-----DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRG 262
G H+ G+ C ++ RLY DP LN ++ + CP + V D
Sbjct: 168 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLR 224
Query: 263 TPMVLDNNYYRNILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAIT 317
TP + DN YY N+ + KGL+ D +L ATD T P V+ A S FF F A+
Sbjct: 225 TPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMD 282
Query: 318 LLSENNPLTGTKGEIRKVCNLANK 341
+ PLTGT+G+IR C + N
Sbjct: 283 RMGNITPLTGTQGQIRLNCRVVNS 306
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 101/316 (31%), Positives = 145/316 (45%), Gaps = 22/316 (6%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY++TCP I+ + S +R FHDC VQ CD S+LL++T
Sbjct: 2 LTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTI 61
Query: 93 LSEKE-MDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKT 151
SE++ + +R + +IK AVE CP VSCADIL ++ V GGP P+
Sbjct: 62 ESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPL 121
Query: 152 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHS 211
GRRD + + Q LP +++ + FA G++ LV L SG H+
Sbjct: 122 GRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTL-----------SGGHT 170
Query: 212 VGRTHCVKLVHRLY-----PEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMV 266
GR C ++RLY DP LN ++ + +CP + D TP
Sbjct: 171 FGRARCSTFINRLYNFSNTGNPDPTLNTTYLEVLRARCPQ---NATGDNLTNLDLSTPDQ 227
Query: 267 LDNNYYRNILDNKGLMMVDHQLATD--KRTRPYVKKMAKSQDYFFKEFSRAITLLSENNP 324
DN YY N+L GL+ D +L + T P V + +Q+ FF F ++ +
Sbjct: 228 FDNRYYSNLLQLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGV 287
Query: 325 LTGTKGEIRKVCNLAN 340
LTG +GEIR CN N
Sbjct: 288 LTGDEGEIRLQCNFVN 303
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 93/240 (38%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMG-----------AHTLGKTHL---- 182
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
K Y P V DN++Y N+L+
Sbjct: 183 ------------------------------KNSGYEGPWTANPNVFDNSFYLNLLNEDWK 212
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 213 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 87/208 (41%), Gaps = 28/208 (13%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++++ P +S AD+ VL+ + +GGP IP GR D + + LPD + +
Sbjct: 77 ETLKKKYP-QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKT 135
Query: 175 MSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHC-VKLVHRLYPEVDPALN 233
S V E F +G + VAL+ G+H+ G TH H + +
Sbjct: 136 QSHVREVFRRLGFNDQETVALI-----------GAHTCGETHIEFSGYHGPWTHDKNGFD 184
Query: 234 PDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKR 293
+L + D + +PK Q DR T ++ ++ D L D
Sbjct: 185 NSFFTQLLDE--DWVLNPKVEQMQLMDRATTKLM-------------MLPSDVCLLLDPS 229
Query: 294 TRPYVKKMAKSQDYFFKEFSRAITLLSE 321
R YV+ AK D F K+F+ A L+E
Sbjct: 230 YRKYVELYAKDNDRFNKDFANAFKKLTE 257
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 93/240 (38%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMG-----------AHTLGKTHL---- 182
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
K Y T V DN++Y N+L+
Sbjct: 183 ------------------------------KNSGYEGPWDATNNVFDNSFYLNLLNEDWK 212
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 213 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 28/208 (13%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++++ P +S AD+ VL+ + +GGP IP GR D + + LPD + +
Sbjct: 76 ETLKKKYP-QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKT 134
Query: 175 MSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHC-VKLVHRLYPEVDPALN 233
S V E F +G + VAL+ G+H+ G H H + +
Sbjct: 135 QSHVREVFRRLGFNDQETVALI-----------GAHTCGECHIEFSGYHGPWTHDKNGFD 183
Query: 234 PDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKR 293
+L + D + +PK Q DR T ++ ++ D L D
Sbjct: 184 NSFFTQLLDE--DWVLNPKVEQMQLMDRATTKLM-------------MLPSDVCLLLDPS 228
Query: 294 TRPYVKKMAKSQDYFFKEFSRAITLLSE 321
R YV+ AK D F K+F+ A L+E
Sbjct: 229 YRKYVELYAKDNDRFNKDFANAFKKLTE 256
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 28/208 (13%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++++ P +S AD+ VL+ + +GGP IP GR D + + LPD + +
Sbjct: 77 ETLKKKYP-QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKT 135
Query: 175 MSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHC-VKLVHRLYPEVDPALN 233
S V E F +G + VAL+ G+H+ G H H + +
Sbjct: 136 QSHVREVFRRLGFNDQETVALI-----------GAHTCGECHIEFSGYHGPWTHDKNGFD 184
Query: 234 PDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKR 293
+L + D + +PK Q DR T ++ ++ D L D
Sbjct: 185 NSFFTQLLDE--DWVLNPKVEQMQLMDRATTKLM-------------MLPSDVCLLLDPS 229
Query: 294 TRPYVKKMAKSQDYFFKEFSRAITLLSE 321
R YV+ AK D F K+F+ A L+E
Sbjct: 230 YRKYVELYAKDNDRFNKDFANAFKKLTE 257
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 86/219 (39%), Gaps = 58/219 (26%)
Query: 108 RYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQY 167
R +E IKE +VS AD L+G V GGP +P GR D + E
Sbjct: 78 RLLEPIKEQFP-----IVSYADFYQLAGVVAVEITGGPEVPFHPGREDKPEPPPE---GR 129
Query: 168 LPDHNDSMSVVLERFA-AIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLVHRLYP 226
LPD + + F A+G+ +VAL SG H++G H
Sbjct: 130 LPDATKGSDHLRDVFGKAMGLSDQDIVAL-----------SGGHTIGAAH---------- 168
Query: 227 EVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL--DNKGLMMV 284
K P + N P++ DN+Y+ +L + GL+ +
Sbjct: 169 ----------------KERSGFEGP----WTSN----PLIFDNSYFTELLTGEKDGLLQL 204
Query: 285 --DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSE 321
D L TD RP V+K A +D FF +++ A LSE
Sbjct: 205 PSDKALLTDSVFRPLVEKYAADEDVFFADYAEAHLKLSE 243
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 98/240 (40%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMG-----------AHTLGKTH----- 181
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
+ + ++ P + N+ V DN++Y N+L+
Sbjct: 182 ---------------LKNSGYEGP----------WTANNN----VFDNSFYLNLLNEDWK 212
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 213 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 39/224 (17%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH L
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTH---LK 180
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNK-G 280
+ Y A N + + K + + D + N+ D+K G
Sbjct: 181 NSGYEGPWGAAN------------NVFTNEKYLNLLNEDW---KLEKNDANNEQWDSKSG 225
Query: 281 LMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 226 YMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 84/212 (39%), Gaps = 54/212 (25%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 93 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKG 148
Query: 175 MSVVLERFA-AIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLVHRLYPEVDPALN 233
+ + F A+G+ +VAL SG H++G H
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVAL-----------SGGHTIGAAHK---------------- 181
Query: 234 PDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL--DNKGLMMV--DHQLA 289
+A + P++ DN+Y+ +L + +GL+ + D L
Sbjct: 182 ------------------EASGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALL 223
Query: 290 TDKRTRPYVKKMAKSQDYFFKEFSRAITLLSE 321
+D RP V K A +D FF +++ A LSE
Sbjct: 224 SDPVFRPLVDKYAADEDAFFADYAEAHQKLSE 255
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 91/240 (37%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD++ V F + ++ +VAL+G +H++G+TH
Sbjct: 139 PDNGR-LPDYDKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTHL---- 182
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
K Y V N +Y N+L+
Sbjct: 183 ------------------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWK 212
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 213 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 90/240 (37%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTHL---- 179
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
K Y V N YY N+L+
Sbjct: 180 ------------------------------KNSGYEGPWGAANNVFTNEYYLNLLNEDWK 209
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 210 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 97/240 (40%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL SG+H++G+TH
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVAL-----------SGAHTLGKTH----- 181
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL----- 276
+ + ++ P + N+ V DN++Y N+L
Sbjct: 182 ---------------LKNSGYEGP----------WTANNN----VFDNSFYLNLLNEDWK 212
Query: 277 -----------DNKGLMM---VDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
D+K + D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 213 LEKNDANNEQWDSKSGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 85/212 (40%), Gaps = 54/212 (25%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 93 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKG 148
Query: 175 MSVVLERFA-AIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLVHRLYPEVDPALN 233
+ + F A+G+ +VAL SG H++G H
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVAL-----------SGGHTIGAAH----------------- 180
Query: 234 PDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL--DNKGLMMV--DHQLA 289
K P + N P++ DN+Y+ +L + +GL+ + D L
Sbjct: 181 ---------KERSGFEGP----WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALL 223
Query: 290 TDKRTRPYVKKMAKSQDYFFKEFSRAITLLSE 321
+D RP V K A +D FF +++ A LSE
Sbjct: 224 SDPVFRPLVDKYAADEDAFFADYAEAHQKLSE 255
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 85/212 (40%), Gaps = 54/212 (25%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 81 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKG 136
Query: 175 MSVVLERFA-AIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLVHRLYPEVDPALN 233
+ + F A+G+ +VAL SG H++G H
Sbjct: 137 SDHLRDVFGKAMGLTDQDIVAL-----------SGGHTIGAAH----------------- 168
Query: 234 PDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL--DNKGLMMV--DHQLA 289
K P + N P++ DN+Y+ +L + +GL+ + D L
Sbjct: 169 ---------KERSGFEGP----WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALL 211
Query: 290 TDKRTRPYVKKMAKSQDYFFKEFSRAITLLSE 321
+D RP V K A +D FF +++ A LSE
Sbjct: 212 SDPVFRPLVDKYAADEDAFFADYAEAHQKLSE 243
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 85/212 (40%), Gaps = 54/212 (25%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 93 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKG 148
Query: 175 MSVVLERFA-AIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLVHRLYPEVDPALN 233
+ + F A+G+ +VAL SG H++G H
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVAL-----------SGGHTIGAAH----------------- 180
Query: 234 PDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL--DNKGLMMV--DHQLA 289
K P + N P++ DN+Y+ +L + +GL+ + D L
Sbjct: 181 ---------KERSGFEGP----WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALL 223
Query: 290 TDKRTRPYVKKMAKSQDYFFKEFSRAITLLSE 321
+D RP V K A +D FF +++ A LSE
Sbjct: 224 SDPVFRPLVDKYAADEDAFFADYAEAHQKLSE 255
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 85/212 (40%), Gaps = 54/212 (25%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 81 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKG 136
Query: 175 MSVVLERFA-AIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLVHRLYPEVDPALN 233
+ + F A+G+ +VAL SG H++G H
Sbjct: 137 SDHLRDVFGKAMGLTDQDIVAL-----------SGGHTIGAAH----------------- 168
Query: 234 PDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL--DNKGLMMV--DHQLA 289
K P + N P++ DN+Y+ +L + +GL+ + D L
Sbjct: 169 ---------KERSGFEGP----WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALL 211
Query: 290 TDKRTRPYVKKMAKSQDYFFKEFSRAITLLSE 321
+D RP V K A +D FF +++ A LSE
Sbjct: 212 SDPVFRPLVDKYAADEDAFFADYAEAHQKLSE 243
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 85/212 (40%), Gaps = 54/212 (25%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 81 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKG 136
Query: 175 MSVVLERFA-AIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLVHRLYPEVDPALN 233
+ + F A+G+ +VAL SG H++G H
Sbjct: 137 SDHLRDVFGKAMGLTDQDIVAL-----------SGGHTIGAAH----------------- 168
Query: 234 PDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL--DNKGLMMV--DHQLA 289
K P + N P++ DN+Y+ +L + +GL+ + D L
Sbjct: 169 ---------KERSGFEGP----WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALL 211
Query: 290 TDKRTRPYVKKMAKSQDYFFKEFSRAITLLSE 321
+D RP V K A +D FF +++ A LSE
Sbjct: 212 SDPVFRPLVDKYAADEDAFFADYAEAHQKLSE 243
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 90/240 (37%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTHL---- 184
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
K Y V N +Y N+L+
Sbjct: 185 ------------------------------KNSGYEGPQGAANNVFTNEFYLNLLNEDWK 214
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 215 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 85/212 (40%), Gaps = 54/212 (25%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 93 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKG 148
Query: 175 MSVVLERFA-AIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLVHRLYPEVDPALN 233
+ + F A+G+ +VAL SG H++G H
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVAL-----------SGGHTIGAAH----------------- 180
Query: 234 PDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL--DNKGLMMV--DHQLA 289
K P + N P++ DN+Y+ +L + +GL+ + D L
Sbjct: 181 ---------KERSGFEGP----WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALL 223
Query: 290 TDKRTRPYVKKMAKSQDYFFKEFSRAITLLSE 321
+D RP V K A +D FF +++ A LSE
Sbjct: 224 SDPVFRPLVDKYAADEDAFFADYAEAHQKLSE 255
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 85/212 (40%), Gaps = 54/212 (25%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 93 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKG 148
Query: 175 MSVVLERFA-AIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLVHRLYPEVDPALN 233
+ + F A+G+ +VAL SG H++G H
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVAL-----------SGGHTIGAAH----------------- 180
Query: 234 PDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL--DNKGLMMV--DHQLA 289
K P + N P++ DN+Y+ +L + +GL+ + D L
Sbjct: 181 ---------KERSGFEGP----WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALL 223
Query: 290 TDKRTRPYVKKMAKSQDYFFKEFSRAITLLSE 321
+D RP V K A +D FF +++ A LSE
Sbjct: 224 SDPVFRPLVDKYAADEDAFFADYAEAHQKLSE 255
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 90/240 (37%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTHL---- 184
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
K Y V N +Y N+L+
Sbjct: 185 ------------------------------KNSGYEGPGGAANNVFTNEFYLNLLNEDWK 214
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 215 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 85/212 (40%), Gaps = 54/212 (25%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 93 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKG 148
Query: 175 MSVVLERFA-AIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLVHRLYPEVDPALN 233
+ + F A+G+ +VAL SG H++G H
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVAL-----------SGGHTIGAAH----------------- 180
Query: 234 PDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL--DNKGLMMV--DHQLA 289
K P + N P++ DN+Y+ +L + +GL+ + D L
Sbjct: 181 ---------KERSGFEGP----WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALL 223
Query: 290 TDKRTRPYVKKMAKSQDYFFKEFSRAITLLSE 321
+D RP V K A +D FF +++ A LSE
Sbjct: 224 SDPVFRPLVDKYAADEDAFFADYAEAHQKLSE 255
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 85/212 (40%), Gaps = 54/212 (25%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 93 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKG 148
Query: 175 MSVVLERFA-AIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLVHRLYPEVDPALN 233
+ + F A+G+ +VAL SG H++G H
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVAL-----------SGGHTIGAAH----------------- 180
Query: 234 PDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL--DNKGLMMV--DHQLA 289
K P + N P++ DN+Y+ +L + +GL+ + D L
Sbjct: 181 ---------KERSGFEGP----WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALL 223
Query: 290 TDKRTRPYVKKMAKSQDYFFKEFSRAITLLSE 321
+D RP V K A +D FF +++ A LSE
Sbjct: 224 SDPVFRPLVDKYAADEDAFFADYAEAHQKLSE 255
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 85/212 (40%), Gaps = 54/212 (25%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 81 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKG 136
Query: 175 MSVVLERFA-AIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLVHRLYPEVDPALN 233
+ + F A+G+ +VAL SG H++G H
Sbjct: 137 SDHLRDVFGKAMGLTDQDIVAL-----------SGGHTIGAAH----------------- 168
Query: 234 PDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL--DNKGLMMV--DHQLA 289
K P + N P++ DN+Y+ +L + +GL+ + D L
Sbjct: 169 ---------KERSGFEGP----WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALL 211
Query: 290 TDKRTRPYVKKMAKSQDYFFKEFSRAITLLSE 321
+D RP V K A +D FF +++ A LSE
Sbjct: 212 SDPVFRPLVDKYAADEDAFFADYAEAHQKLSE 243
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 93/240 (38%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH L
Sbjct: 139 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTH---LK 183
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
+ Y A N V N +Y N+L+
Sbjct: 184 NSGYEGPGGAAN-------------------------------NVFTNEFYLNLLNEDWK 212
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 213 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 53/231 (22%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 139 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTH----- 181
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYY--RNILDNK 279
+ + ++ P A V + G +L+ ++ +N +N+
Sbjct: 182 ---------------LKNSGYEGPWG-----AANNVFTNEGYLNLLNEDWKLEKNDANNE 221
Query: 280 ------GLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 222 QWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 41/225 (18%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMG-----------AHALGKTHLKRSG 186
Query: 222 HR-LYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNK- 279
+ + + + ++L++ + +ND D+K
Sbjct: 187 YEGPWGAANNVFTNEFYLNLLNEN---------WKLEKNDANNEQ----------WDSKS 227
Query: 280 GLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 228 GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 97/240 (40%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMG-----------AHTLGKTH----- 181
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL----- 276
+ + ++ P + N+ V DN++Y N+L
Sbjct: 182 ---------------LKNSGYEGP----------WTANNN----VFDNSFYLNLLNEDWK 212
Query: 277 -----------DNKGLMM---VDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
D+K + D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 213 LEKNDANNEQWDSKSGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 90/240 (37%), Gaps = 73/240 (30%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 87 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 141
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 142 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTHLKNSG 189
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
+ G V N +Y N+L+
Sbjct: 190 YE------------------------------------GGGANNVFTNEFYLNLLNEDWK 213
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 214 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 273
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 90/240 (37%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTHL---- 184
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
K Y V N +Y N+L+
Sbjct: 185 ------------------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWK 214
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 215 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 41/225 (18%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH +
Sbjct: 141 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMG-----------AHALGKTHLKRSG 188
Query: 222 HR-LYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNK- 279
+ + + + ++L++ + +ND D+K
Sbjct: 189 YEGPWGAANNVFTNEFYLNLLNEN---------WKLEKNDANNEQ----------WDSKS 229
Query: 280 GLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 230 GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 90/240 (37%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTHL---- 184
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
K Y V N +Y N+L+
Sbjct: 185 ------------------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWK 214
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 215 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 90/240 (37%), Gaps = 73/240 (30%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTHLKNSG 183
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
+ G V N +Y N+L+
Sbjct: 184 YE------------------------------------GGGANNVFTNEFYLNLLNEDWK 207
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 208 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 267
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 96/225 (42%), Gaps = 41/225 (18%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+ G+H++G+TH L
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALM-----------GAHALGKTH---LK 183
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRN-ILDNK- 279
+ Y A N C ++ N L+ N N D+K
Sbjct: 184 NSGYEGPWGAAN---------NC-------FTNEFYLNLLNEDWKLEKNDANNEQWDSKS 227
Query: 280 GLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 228 GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 90/240 (37%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTHL---- 184
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
K Y V N +Y N+L+
Sbjct: 185 ------------------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWK 214
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 215 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 90/240 (37%), Gaps = 73/240 (30%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 82 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 136
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 137 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTHLKNSG 184
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
+ G V N +Y N+L+
Sbjct: 185 YE------------------------------------GGGANNVFTNEFYLNLLNEDWK 208
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 209 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 268
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 90/240 (37%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 87 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 141
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 142 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTHL---- 185
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
K Y V N +Y N+L+
Sbjct: 186 ------------------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWK 215
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 216 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 275
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 90/240 (37%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 141 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMG-----------AHALGKTHL---- 184
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
K Y V N +Y N+L+
Sbjct: 185 ------------------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWK 214
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 215 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 90/240 (37%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTHL---- 184
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
K Y V N +Y N+L+
Sbjct: 185 ------------------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWK 214
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 215 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 90/240 (37%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTHL---- 184
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
K Y V N +Y N+L+
Sbjct: 185 ------------------------------KNSGYEGPFGAANNVFTNEFYLNLLNEDWK 214
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 215 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 90/240 (37%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTHL---- 184
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
K Y V N +Y N+L+
Sbjct: 185 ------------------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWK 214
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 215 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 41/225 (18%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH +
Sbjct: 136 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMG-----------AHALGKTHLKRSG 183
Query: 222 HR-LYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNK- 279
+ + + + ++L++ + +ND D+K
Sbjct: 184 YEGPWGAANNVFTNEFYLNLLNE---------DWKLEKNDANNEQ----------WDSKS 224
Query: 280 GLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 225 GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 90/240 (37%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTHL---- 179
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
K Y V N +Y N+L+
Sbjct: 180 ------------------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWK 209
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 210 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 90/240 (37%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 139 PDNGR-LPDMDKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTHL---- 182
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
K Y V N +Y N+L+
Sbjct: 183 ------------------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWK 212
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 213 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 90/240 (37%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 139 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTHL---- 182
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
K Y V N +Y N+L+
Sbjct: 183 ------------------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWK 212
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 213 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 41/225 (18%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH +
Sbjct: 141 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMG-----------AHALGKTHLKRSG 188
Query: 222 HR-LYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNK- 279
+ + + + ++L++ + +ND D+K
Sbjct: 189 YEGPWGAANNVFTNEFYLNLLNE---------DWKLEKNDANNEQ----------WDSKS 229
Query: 280 GLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 230 GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 90/240 (37%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMG-----------AHALGKTHL---- 182
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
K Y V N +Y N+L+
Sbjct: 183 ------------------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWK 212
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 213 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 90/240 (37%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMG-----------AHALGKTHL---- 182
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
K Y V N +Y N+L+
Sbjct: 183 ------------------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWK 212
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 213 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 90/240 (37%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMG-----------AHALGKTHL---- 182
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
K Y V N +Y N+L+
Sbjct: 183 ------------------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWK 212
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 213 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 93/240 (38%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH L
Sbjct: 139 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTH---LK 183
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
+ Y A N V N +Y N+L+
Sbjct: 184 NSGYEGPWGAAN-------------------------------NVFTNEFYLNLLNEDWK 212
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 213 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 90/240 (37%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMG-----------AHALGKTHL---- 182
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNK-- 279
K Y V N +Y N+L+
Sbjct: 183 ------------------------------KNSGYEGPWGAANNVFTNEFYLNLLNENWK 212
Query: 280 ---------------GLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 213 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 90/240 (37%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 83 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 137
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 138 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMG-----------AHALGKTHL---- 181
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
K Y V N +Y N+L+
Sbjct: 182 ------------------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWK 211
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 212 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 271
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 94/222 (42%), Gaps = 35/222 (15%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 77 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 131
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
LPD + V F + ++ +VAL+G +H++G+TH +
Sbjct: 132 PD-NGRLPDADKDADYVRTFFQRLNMNDREVVALMG-----------AHALGKTHLKRSG 179
Query: 222 HR-LYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKG 280
+ + + + ++L++ + +ND NN +
Sbjct: 180 YEGPFGAANNVFTNEFYLNLLNE---------DWKLEKNDA-------NNEQWDSKSGYM 223
Query: 281 LMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
++ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 224 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 265
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 94/240 (39%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTT 140
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTH----- 183
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
+ + ++ P + V N +Y N+L+
Sbjct: 184 ---------------LKNSGYEGPWGCAN--------------NVFTNEFYLNLLNEDWK 214
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 215 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 41/225 (18%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 83 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 137
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH +
Sbjct: 138 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMG-----------AHALGKTHLKRSG 185
Query: 222 HR-LYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNK- 279
+ + + + ++L++ + +ND D+K
Sbjct: 186 YEGPFGAANNVFTNEFYLNLLNE---------DWKLEKNDANNEQ----------WDSKS 226
Query: 280 GLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 227 GYMMLPTDYSLIQDPKYLSIVKEYANDQDRFFKDFSKAFEKLLEN 271
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 92/240 (38%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEWQGPKIPWRCGRVDTPEDTT 140
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH L
Sbjct: 141 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMG-----------AHALGKTH---LK 185
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
+ Y A N V N +Y N+L+
Sbjct: 186 NSGYEGPWGAAN-------------------------------NVFTNEFYLNLLNEDWK 214
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 215 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 90/240 (37%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTHL---- 179
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
K Y V N +Y N+L+
Sbjct: 180 ------------------------------KNSGYEGPQGAANNVFTNEFYLNLLNEDWK 209
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L E+
Sbjct: 210 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 269
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 92/240 (38%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL G+H++G+TH L
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVAL-----------KGAHALGKTH---LK 180
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
+ Y A N V N +Y N+L+
Sbjct: 181 NSGYEGPWGAAN-------------------------------NVFTNEFYLNLLNEDWK 209
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 210 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 93/240 (38%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH L
Sbjct: 139 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTH---LK 183
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
+ Y A N V N +Y N+L+
Sbjct: 184 NSGYEGPGGAAN-------------------------------NVFTNEFYLNLLNEDWK 212
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ ++ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 213 LEKNDANNEQWDSKSGYMMLPTNYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 93/240 (38%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH L
Sbjct: 139 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTH---LK 183
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
+ Y A N V N +Y N+L+
Sbjct: 184 NSGYEGPGGAAN-------------------------------NVFTNEFYLNLLNEDWK 212
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L E+
Sbjct: 213 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 272
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 96/225 (42%), Gaps = 41/225 (18%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTHLKNSG 183
Query: 222 HRL-YPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNK- 279
+ Y + + ++L++ + +ND D+K
Sbjct: 184 YEGPYGAANNVFTNEFYLNLLNE---------DWKLEKNDANNEQ----------WDSKS 224
Query: 280 GLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L E+
Sbjct: 225 GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 269
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 94/222 (42%), Gaps = 35/222 (15%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTHLKNSG 188
Query: 222 HR-LYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKG 280
+ + + + ++L++ + +ND NN +
Sbjct: 189 YEGPWGAANNVFTNEFYLNLLNE---------DWKLEKNDA-------NNEQWDSKSGYI 232
Query: 281 LMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
++ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 233 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 90/240 (37%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTHL---- 179
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
K Y V N +Y N+L+
Sbjct: 180 ------------------------------KNSGYEGPGGAANNVFTNEFYLNLLNEDWK 209
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L E+
Sbjct: 210 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 269
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 90/240 (37%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 82 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 136
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 137 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTHL---- 180
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
K Y V N +Y N+L+
Sbjct: 181 ------------------------------KNSGYEGPGGAANNVFTNEFYLNLLNEDWK 210
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L E+
Sbjct: 211 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 270
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 90/240 (37%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 87 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 141
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 142 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTHL---- 185
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
K Y V N +Y N+L+
Sbjct: 186 ------------------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWK 215
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ ++ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 216 LEKNDANNEQWDSKSGYMMLPTEYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 275
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 90/240 (37%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTHL---- 184
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
K Y V N +Y N+L+
Sbjct: 185 ------------------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWK 214
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ ++ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 215 LEKNDANNEQWDSKSGYMMLPTNYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 90/240 (37%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTHL---- 179
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
K Y V N +Y N+L+
Sbjct: 180 ------------------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWK 209
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L E+
Sbjct: 210 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 269
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 90/240 (37%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMG-----------AHALGKTHL---- 182
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
K Y V N +Y N+L+
Sbjct: 183 ------------------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWK 212
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L E+
Sbjct: 213 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 272
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 90/240 (37%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTHL---- 179
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
K Y V N +Y N+L+
Sbjct: 180 ------------------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWK 209
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L E+
Sbjct: 210 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 269
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 89/240 (37%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTHL---- 179
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL----- 276
K Y V N +Y N+L
Sbjct: 180 ------------------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWK 209
Query: 277 -----------DNKGLMM---VDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
D+K M D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 210 LEKNDANNEQWDSKSGYMHLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 96/225 (42%), Gaps = 41/225 (18%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMG-----------AHALGKTHLKRSG 186
Query: 222 HR-LYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNK- 279
+ + + + ++L++ + +ND D+K
Sbjct: 187 YEGPWGAANNVFTNEFYLNLLNE---------DWKLEKNDANNEQ----------WDSKS 227
Query: 280 GLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ + L D + VK+ A QD FFK+FS+A L EN
Sbjct: 228 GYMMLPTXYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 93/240 (38%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+T +L
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKT---ELK 180
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
+ Y A N V N +Y N+L+
Sbjct: 181 NSGYEGPWGAAN-------------------------------NVFTNEFYLNLLNEDWK 209
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 210 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 89/240 (37%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 87 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 141
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G +H++G+TH
Sbjct: 142 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AHALGKTHL---- 185
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
K Y V N +Y N+L+
Sbjct: 186 ------------------------------KNSGYEGPWGAANNVFTNEFYLNLLNEDWK 215
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ + L D + VK+ A QD FFK+FS+A L EN
Sbjct: 216 LEKNDANNEQWDSKSGYMMLPTAYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 275
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 92/240 (38%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 82 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 136
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G + ++G+TH L
Sbjct: 137 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AGALGKTH---LK 181
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
+ Y A N V N +Y N+L+
Sbjct: 182 NSGYEGPWGAAN-------------------------------NVFTNEFYLNLLNEDWK 210
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 211 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 270
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 92/240 (38%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 82 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 136
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G + ++G+TH L
Sbjct: 137 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AGALGKTH---LK 181
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
+ Y A N V N +Y N+L+
Sbjct: 182 NSGYEGPWGAAN-------------------------------NVFTNEFYLNLLNEDWK 210
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 211 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 270
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 92/240 (38%), Gaps = 71/240 (29%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLV 221
+ LPD + V F + ++ +VAL+G + ++G+TH L
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMG-----------AGALGKTH---LK 180
Query: 222 HRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--- 278
+ Y A N V N +Y N+L+
Sbjct: 181 NSGYEGPWGAAN-------------------------------NVFTNEFYLNLLNEDWK 209
Query: 279 --------------KGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 322
G MM+ D+ L D + VK+ A QD FFK+FS+A L EN
Sbjct: 210 LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 83/211 (39%), Gaps = 53/211 (25%)
Query: 125 VSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLER--F 182
V+ AD+ L+ + GGP IP+K GR D + E LPD R F
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDVF 146
Query: 183 AAIGIDAPGLVALLGLSYYYWSISSGSHSVGRTHCVKLVHRLYPEVDPALNPDHVPHMLH 242
+G++ +VAL SG+H++GR+ P+ P+
Sbjct: 147 YRMGLNDKEIVAL-----------SGAHTLGRSR---------PDRSGWGKPE------- 179
Query: 243 KCPDAIPDPKAVQYVRNDRGTP---------MVLDNNYYRNILDNKG----LMMVDHQLA 289
+Y ++ G P + DN+Y+++I + + ++ D L
Sbjct: 180 -----------TKYTKDGPGAPGGQSWTAQWLKFDNSYFKDIKERRDEDLLVLPTDAALF 228
Query: 290 TDKRTRPYVKKMAKSQDYFFKEFSRAITLLS 320
D + Y +K A + FFK+++ A LS
Sbjct: 229 EDPSFKVYAEKYAADPEAFFKDYAEAHAKLS 259
>pdb|1U2K|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase- Peroxidase Katg Of Escherichia Coli (I41)
pdb|1U2L|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P1)
pdb|1U2L|B Chain B, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P1)
Length = 309
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 20/104 (19%)
Query: 113 IKEAVERECPGVVSCADILVLSGRDGVVALGGP-----YIPLKTGRRDGRKSRA--EILE 165
+ E +++E G S ADI+VL+G GV ++P GR D R+ + E+ E
Sbjct: 95 VLEKIQKES-GKASLADIIVLAGVVGVEKAASAAGLSIHVPFAPGRVDARQDQTDIEMFE 153
Query: 166 QYLP------------DHNDSMSVVLERFAAIGIDAPGLVALLG 197
P D + + S+++++ + + AP + AL+G
Sbjct: 154 LLEPIADGFRNYRARLDVSTTESLLIDKAQQLTLTAPEMTALVG 197
>pdb|1U2J|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|B Chain B, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|C Chain C, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|D Chain D, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|E Chain E, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|F Chain F, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|G Chain G, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|H Chain H, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
Length = 326
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 20/104 (19%)
Query: 113 IKEAVERECPGVVSCADILVLSGRDGV-----VALGGPYIPLKTGRRDGRKSRA--EILE 165
+ E +++E G S ADI+VL+G GV A ++P GR D R+ + E+ E
Sbjct: 112 VLEKIQKES-GKASLADIIVLAGVVGVEKAASAAGLSIHVPFAPGRVDARQDQTDIEMFE 170
Query: 166 QYLP------------DHNDSMSVVLERFAAIGIDAPGLVALLG 197
P D + + S+++++ + + AP + AL+G
Sbjct: 171 LLEPIADGFRNYRARLDVSTTESLLIDKAQQLTLTAPEMTALVG 214
>pdb|3BIC|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Mutase
pdb|3BIC|B Chain B, Crystal Structure Of Human Methylmalonyl-Coa Mutase
pdb|2XIJ|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Mutase In
Complex With Adenosylcobalamin
pdb|2XIQ|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Mutase In
Complex With Adenosylcobalamin And Malonyl-Coa
pdb|2XIQ|B Chain B, Crystal Structure Of Human Methylmalonyl-Coa Mutase In
Complex With Adenosylcobalamin And Malonyl-Coa
Length = 762
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
Query: 154 RDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAP-GLVALLGLSYYYWSISSGSHSV 212
R+GR+ R + + H+ V+ FA +G D G + ++ + H+V
Sbjct: 600 REGRRPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDADVHAV 659
Query: 213 GRTHCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIP 249
G + L PE+ LN P +L C IP
Sbjct: 660 GVSTLAAGHKTLVPELIKELNSLGRPDILVMCGGVIP 696
>pdb|1MN2|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant E35q,
D179n
Length = 357
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 76/196 (38%), Gaps = 53/196 (27%)
Query: 43 PQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDC----------AVQSCDASLLLDSTRKT 92
P A+D+ Q + A +R FHD A D S+LL T +
Sbjct: 19 PLAQDL---QETIFQNECGQDAHEVIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVEP 75
Query: 93 LSEKEMDRSFGMRNFRYIENIKEAVERECP-----GVVSCADILVLSGRDGVVAL----G 143
NF I ++V P +S AD++ +G VAL G
Sbjct: 76 -------------NFSANNGIDDSVNNLIPFMQKHNTISAADLVQFAG---AVALSNCPG 119
Query: 144 GPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAP-GLVALLGLSYYY 202
P + GR + K+ A + + +P+ DS++ +L+RF G P +V+LL
Sbjct: 120 APRLEFLAGRPN--KTIAAV-DGLIPEPQDSVTKILQRFEDAGGFTPFEVVSLL------ 170
Query: 203 WSISSGSHSVGRTHCV 218
SHSV R + V
Sbjct: 171 -----ASHSVARANKV 181
>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant
pdb|3REZ|B Chain B, Glycoprotein Gpib Variant
pdb|3REZ|C Chain C, Glycoprotein Gpib Variant
pdb|3REZ|D Chain D, Glycoprotein Gpib Variant
Length = 129
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 121 CPGVVSCADILVLSGRDGVVALGGPYIPLKT 151
CP SCA LV GR G+ AL P +P +T
Sbjct: 4 CPAPCSCAGTLVDCGRRGLTAL--PALPART 32
>pdb|1MN1|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant D179n
Length = 357
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 76/196 (38%), Gaps = 53/196 (27%)
Query: 43 PQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDC----------AVQSCDASLLLDSTRKT 92
P A+D+ Q + A +R FHD A D S+LL T +
Sbjct: 19 PLAQDL---QETIFQNECGEDAHEVIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVEP 75
Query: 93 LSEKEMDRSFGMRNFRYIENIKEAVERECP-----GVVSCADILVLSGRDGVVAL----G 143
NF I ++V P +S AD++ +G VAL G
Sbjct: 76 -------------NFSANNGIDDSVNNLIPFMQKHNTISAADLVQFAG---AVALSNCPG 119
Query: 144 GPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAP-GLVALLGLSYYY 202
P + GR + K+ A + + +P+ DS++ +L+RF G P +V+LL
Sbjct: 120 APRLEFLAGRPN--KTIAAV-DGLIPEPQDSVTKILQRFEDAGGFTPFEVVSLL------ 170
Query: 203 WSISSGSHSVGRTHCV 218
SHSV R + V
Sbjct: 171 -----ASHSVARANKV 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,015,797
Number of Sequences: 62578
Number of extensions: 422320
Number of successful extensions: 1114
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 909
Number of HSP's gapped (non-prelim): 119
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)