Query 019130
Match_columns 345
No_of_seqs 152 out of 285
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 11:22:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019130.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019130hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l8d_A DNA double-strand break 94.1 0.3 1E-05 39.2 9.2 12 192-203 47-58 (112)
2 3na7_A HP0958; flagellar bioge 90.7 1.2 4.2E-05 40.9 9.7 62 89-150 61-125 (256)
3 3pgw_S U1-70K; protein-RNA com 90.0 0.09 3.1E-06 52.3 1.4 8 197-204 169-176 (437)
4 2fc6_A Nuclear, target of EGR1 78.3 0.43 1.5E-05 33.7 0.0 26 34-68 20-46 (50)
5 1lq7_A Alpha3W; three helix bu 76.1 5.4 0.00019 28.6 5.2 32 131-162 27-58 (67)
6 3onj_A T-snare VTI1; helix, HA 73.5 31 0.001 27.0 9.8 86 82-178 3-89 (97)
7 3cw1_L U1 small nuclear ribonu 73.1 0.85 2.9E-05 35.1 0.5 31 193-224 4-34 (77)
8 2d9n_A Cleavage and polyadenyl 69.7 2.6 9E-05 31.7 2.5 29 30-67 6-34 (77)
9 1lq7_A Alpha3W; three helix bu 67.2 11 0.00039 26.9 5.2 41 131-174 4-44 (67)
10 3d2q_A Muscleblind-like protei 66.9 2 6.7E-05 31.9 1.3 25 32-66 4-30 (70)
11 4afl_A P29ING4, inhibitor of g 66.3 24 0.00082 27.7 7.7 72 92-169 22-97 (104)
12 4b6x_A AVRRPS4, avirulence pro 65.7 44 0.0015 25.8 8.7 56 122-177 22-77 (90)
13 2e5s_A Otthump00000018578; ZF- 65.4 3.5 0.00012 32.7 2.6 13 35-47 21-33 (98)
14 2cqe_A KIAA1064 protein; CCCH 65.2 2.1 7.4E-05 33.9 1.3 23 33-65 12-35 (98)
15 2qyw_A Vesicle transport throu 65.0 49 0.0017 26.0 11.9 82 81-177 16-100 (102)
16 1x0t_A Ribonuclease P protein 64.5 17 0.0006 29.6 6.7 66 131-208 16-81 (120)
17 2rhk_C Cleavage and polyadenyl 61.9 3.3 0.00011 30.9 1.7 28 30-66 12-39 (72)
18 1m1j_B Fibrinogen beta chain; 61.6 58 0.002 32.7 11.2 94 84-178 93-191 (464)
19 1vcs_A Vesicle transport throu 61.5 44 0.0015 26.3 8.4 21 158-178 70-90 (102)
20 3d2n_A Muscleblind-like protei 60.5 3.5 0.00012 31.8 1.6 17 56-72 55-72 (83)
21 3na7_A HP0958; flagellar bioge 59.4 84 0.0029 28.4 11.1 60 92-151 57-119 (256)
22 2lw1_A ABC transporter ATP-bin 58.7 51 0.0017 25.2 8.2 52 126-177 19-78 (89)
23 2i0m_A Phosphate transport sys 58.2 88 0.003 26.7 11.0 121 86-216 76-198 (216)
24 1sum_B Phosphate transport sys 55.7 57 0.002 28.5 9.2 81 129-217 117-199 (235)
25 2jee_A YIIU; FTSZ, septum, coi 55.6 29 0.001 26.7 6.1 13 160-172 53-65 (81)
26 1zu1_A DSRBP-ZFA, RNA binding 54.2 3 0.0001 34.3 0.3 32 191-225 92-123 (127)
27 3d2q_A Muscleblind-like protei 53.0 5 0.00017 29.6 1.4 25 34-68 42-66 (70)
28 2dq0_A Seryl-tRNA synthetase; 51.7 20 0.00067 35.7 5.9 49 128-178 44-92 (455)
29 2rpp_A Muscleblind-like protei 51.4 8.3 0.00028 30.1 2.5 44 30-73 13-81 (89)
30 3qne_A Seryl-tRNA synthetase, 50.1 25 0.00087 35.4 6.4 48 129-178 47-94 (485)
31 3ghg_A Fibrinogen alpha chain; 49.8 54 0.0018 33.5 8.6 22 33-61 24-46 (562)
32 4ani_A Protein GRPE; chaperone 49.2 45 0.0015 30.0 7.3 72 129-216 59-130 (213)
33 2k3r_A Ribonuclease P protein 48.6 18 0.00062 29.7 4.2 64 133-208 13-76 (123)
34 1zu1_A DSRBP-ZFA, RNA binding 48.4 4.1 0.00014 33.5 0.2 28 191-221 31-58 (127)
35 3pxg_A Negative regulator of g 45.7 44 0.0015 32.8 7.3 48 131-178 396-443 (468)
36 1m1j_C Fibrinogen gamma chain; 45.1 54 0.0018 32.3 7.7 24 88-111 38-61 (409)
37 1yzm_A FYVE-finger-containing 44.2 80 0.0028 22.2 6.8 41 134-174 7-47 (51)
38 3mjh_B Early endosome antigen 42.9 6.7 0.00023 25.4 0.6 21 193-216 6-26 (34)
39 2yrk_A Zinc finger homeobox pr 42.6 5 0.00017 28.8 -0.1 31 193-226 14-44 (55)
40 1wle_A Seryl-tRNA synthetase; 42.5 44 0.0015 33.7 6.8 50 129-178 84-139 (501)
41 2h8b_A Insulin-like 3; insulin 42.3 5.2 0.00018 24.2 -0.0 9 39-47 18-26 (26)
42 2lf0_A Uncharacterized protein 41.6 64 0.0022 26.6 6.4 49 129-177 10-58 (123)
43 1skh_A Major prion protein 2; 41.6 4.2 0.00014 25.6 -0.5 23 40-62 4-26 (30)
44 3v1a_A Computational design, M 41.2 87 0.003 21.7 6.5 39 134-172 6-44 (48)
45 1z0k_B FYVE-finger-containing 39.7 89 0.003 23.3 6.4 42 133-174 24-65 (69)
46 1gp8_A Protein (scaffolding pr 38.4 32 0.0011 22.9 3.3 31 136-166 8-38 (40)
47 2yru_A Steroid receptor RNA ac 37.8 86 0.0029 25.5 6.7 51 95-163 36-86 (118)
48 1srk_A Zinc finger protein ZFP 37.5 12 0.00039 21.9 1.0 23 190-215 5-27 (35)
49 3mq9_A Bone marrow stromal ant 37.1 1.4E+02 0.0048 28.8 9.4 53 125-178 400-459 (471)
50 3oja_B Anopheles plasmodium-re 36.3 2.9E+02 0.0099 27.2 11.8 22 157-178 532-553 (597)
51 1dkg_A Nucleotide exchange fac 36.0 1.1E+02 0.0038 26.9 7.7 28 189-216 83-110 (197)
52 3pwf_A Rubrerythrin; non heme 35.8 71 0.0024 27.4 6.2 11 191-201 137-147 (170)
53 1ik9_A DNA repair protein XRCC 35.5 2.4E+02 0.0081 25.1 10.6 49 129-177 146-194 (213)
54 1lrz_A FEMA, factor essential 35.4 1.1E+02 0.0039 29.3 8.4 19 159-177 278-296 (426)
55 1znf_A 31ST zinc finger from X 34.9 16 0.00056 19.6 1.4 20 193-215 2-21 (27)
56 1xwm_A PHOU, phosphate uptake 34.9 2.1E+02 0.0072 24.3 9.4 80 129-216 117-198 (217)
57 2m0d_A Zinc finger and BTB dom 34.3 12 0.0004 20.5 0.6 22 191-215 2-23 (30)
58 3r8n_T 30S ribosomal protein S 33.8 74 0.0025 24.5 5.3 36 133-168 21-56 (85)
59 2lw1_A ABC transporter ATP-bin 33.0 1.4E+02 0.0048 22.6 6.9 27 86-112 20-46 (89)
60 1yuz_A Nigerythrin; rubrythrin 33.0 70 0.0024 28.2 5.8 12 190-201 169-180 (202)
61 1m1j_A Fibrinogen alpha subuni 33.0 1.6E+02 0.0056 29.5 8.9 23 32-61 23-47 (491)
62 2r6a_C DNAG primase, helicase 33.0 1E+02 0.0035 24.2 6.5 37 134-170 103-139 (143)
63 1z0j_B FYVE-finger-containing 32.9 1.4E+02 0.0047 21.6 6.5 44 132-175 12-55 (59)
64 1zr9_A Zinc finger protein 593 32.6 12 0.00041 31.1 0.6 30 190-222 48-77 (124)
65 2lo3_A SAGA-associated factor 32.3 14 0.00047 25.2 0.8 28 190-217 15-42 (44)
66 2dfs_A Myosin-5A; myosin-V, in 32.2 1.7E+02 0.0058 32.3 9.9 52 126-178 988-1039(1080)
67 2elr_A Zinc finger protein 406 32.0 15 0.00051 21.4 0.9 23 190-215 7-29 (36)
68 3hho_A CO-chaperone protein HS 31.8 1.8E+02 0.0063 24.6 8.2 42 131-172 122-163 (174)
69 2spc_A Spectrin; cytoskeleton; 31.4 1.6E+02 0.0056 22.0 7.4 50 128-178 49-98 (107)
70 3hnw_A Uncharacterized protein 30.8 98 0.0033 25.8 6.1 20 91-110 28-47 (138)
71 3uo3_A J-type CO-chaperone JAC 30.8 1.8E+02 0.0062 25.0 8.1 43 131-173 127-169 (181)
72 1e52_A Excinuclease ABC subuni 30.7 90 0.0031 22.7 5.1 38 133-170 21-58 (63)
73 1lko_A Rubrerythrin all-iron(I 29.9 1.2E+02 0.0041 26.2 6.8 11 191-201 154-164 (191)
74 2i5o_A DNA polymerase ETA; zin 29.8 16 0.00054 24.3 0.7 26 191-216 8-33 (39)
75 2m0f_A Zinc finger and BTB dom 29.3 14 0.00048 20.1 0.4 12 192-203 2-13 (29)
76 3u8p_A Cytochrome B562 integra 29.2 1.8E+02 0.0062 27.9 8.2 27 143-169 116-142 (347)
77 2en7_A Zinc finger protein 268 28.8 21 0.00073 21.8 1.3 23 190-215 10-32 (44)
78 2elq_A Zinc finger protein 406 28.7 16 0.00053 21.5 0.6 23 190-215 7-29 (36)
79 1t72_A Phosphate transport sys 28.7 2.2E+02 0.0076 24.2 8.4 84 125-214 14-100 (227)
80 1x4t_A Hypothetical protein LO 28.7 1.3E+02 0.0045 23.6 6.0 44 88-145 25-68 (92)
81 2aus_D NOP10, ribosome biogene 28.6 12 0.00043 27.2 0.1 14 190-203 3-16 (60)
82 3lay_A Zinc resistance-associa 28.5 1.6E+02 0.0054 25.5 7.2 49 130-178 86-136 (175)
83 1p7a_A BF3, BKLF, kruppel-like 28.5 26 0.00088 20.5 1.6 23 190-215 9-31 (37)
84 3u9g_A Zinc finger CCCH-type a 28.4 22 0.00076 32.4 1.7 27 35-66 90-116 (229)
85 2d9m_A Zinc finger CCCH-type d 28.3 13 0.00045 27.8 0.2 23 35-66 21-43 (69)
86 3frt_A Charged multivesicular 28.3 3.2E+02 0.011 24.4 10.5 65 95-175 10-74 (218)
87 2eq2_A Zinc finger protein 347 28.2 26 0.00087 21.8 1.6 28 190-222 10-37 (46)
88 2dq3_A Seryl-tRNA synthetase; 28.2 22 0.00074 35.0 1.8 46 130-177 45-90 (425)
89 1tjl_A DNAK suppressor protein 28.0 2.4E+02 0.0083 23.6 8.2 13 191-203 110-122 (151)
90 2kfq_A FP1; protein, de novo p 27.8 18 0.00063 20.8 0.8 20 193-215 3-22 (32)
91 2k5c_A Uncharacterized protein 27.6 12 0.00042 29.0 -0.1 14 190-203 6-19 (95)
92 3hd7_A Vesicle-associated memb 27.3 1.5E+02 0.0052 22.7 6.2 16 133-148 30-45 (91)
93 1njq_A Superman protein; zinc- 27.1 19 0.00064 21.7 0.7 22 191-215 5-26 (39)
94 2kvf_A Zinc finger and BTB dom 26.8 21 0.00072 19.4 0.9 21 192-215 3-23 (28)
95 1ses_A Seryl-tRNA synthetase; 26.8 94 0.0032 30.4 6.1 45 130-178 43-87 (421)
96 1fxk_C Protein (prefoldin); ar 26.6 1.8E+02 0.0063 23.2 7.0 42 94-148 87-128 (133)
97 3pe0_A Plectin; cytoskeleton, 26.4 3.7E+02 0.013 24.4 10.8 87 90-177 7-102 (283)
98 2els_A Zinc finger protein 406 26.0 17 0.0006 21.2 0.4 23 190-215 7-29 (36)
99 3lss_A Seryl-tRNA synthetase; 25.9 1.3E+02 0.0043 30.3 6.9 23 156-178 100-127 (484)
100 3us6_A Histidine-containing ph 25.9 2.8E+02 0.0097 22.9 12.3 76 89-167 42-122 (153)
101 2vqe_T 30S ribosomal protein S 25.5 1.2E+02 0.0041 24.3 5.4 36 133-168 28-63 (106)
102 2lvt_A Zinc finger and BTB dom 31.1 15 0.00052 20.2 0.0 11 193-203 3-13 (29)
103 1ard_A Yeast transcription fac 24.9 27 0.00092 18.8 1.1 12 192-203 2-13 (29)
104 1sfc_A VAMP 2, protein (synapt 24.9 1.8E+02 0.0062 22.5 6.3 13 140-152 45-57 (96)
105 3mhs_E SAGA-associated factor 24.7 14 0.00049 29.3 -0.2 22 190-215 73-94 (96)
106 2odv_A Plectin 1, HD1; plakin 24.6 3.8E+02 0.013 23.9 11.6 54 124-178 167-220 (235)
107 2dfs_A Myosin-5A; myosin-V, in 24.4 1.2E+02 0.0041 33.4 7.0 16 162-177 984-999 (1080)
108 3b5n_A Synaptobrevin homolog 1 24.3 1.9E+02 0.0064 20.3 6.2 14 135-148 29-42 (61)
109 2elt_A Zinc finger protein 406 23.5 21 0.00073 20.7 0.5 14 190-203 7-20 (36)
110 2k48_A Nucleoprotein; viral pr 23.4 57 0.0019 26.3 3.0 67 85-151 32-104 (107)
111 3bvo_A CO-chaperone protein HS 23.3 3.2E+02 0.011 24.0 8.4 41 134-174 160-200 (207)
112 3u9g_A Zinc finger CCCH-type a 23.1 32 0.0011 31.4 1.7 10 33-43 150-159 (229)
113 6rxn_A Rubredoxin; electron tr 22.4 21 0.00071 24.5 0.3 10 193-202 31-40 (46)
114 3kdq_A Uncharacterized conserv 22.2 2.1E+02 0.0072 24.2 6.7 80 98-177 14-99 (154)
115 1s35_A Beta-I spectrin, spectr 22.2 2.3E+02 0.008 23.6 7.2 49 129-178 154-202 (214)
116 1rik_A E6APC1 peptide; E6-bind 22.0 33 0.0011 18.5 1.1 20 193-215 3-22 (29)
117 4gzn_C ZFP-57, zinc finger pro 22.0 32 0.0011 24.1 1.2 29 189-222 29-57 (60)
118 2eoy_A Zinc finger protein 473 21.7 24 0.00082 22.0 0.5 28 190-222 10-37 (46)
119 2apo_B Ribosome biogenesis pro 21.7 20 0.00069 26.1 0.1 14 190-203 4-17 (60)
120 1rim_A E6APC2 peptide; E6-bind 21.5 35 0.0012 19.7 1.2 20 193-215 3-22 (33)
121 2em5_A ZFP-95, zinc finger pro 21.5 29 0.001 21.6 0.9 23 190-215 10-32 (46)
122 1deq_A Fibrinogen (alpha chain 21.4 4.8E+02 0.016 25.5 9.7 23 32-61 26-49 (390)
123 2ytb_A Zinc finger protein 32; 21.1 34 0.0012 20.6 1.1 23 190-215 9-31 (42)
124 2yte_A Zinc finger protein 473 20.8 35 0.0012 20.5 1.1 23 190-215 8-30 (42)
125 1yui_A GAGA-factor; complex (D 20.6 29 0.001 22.6 0.8 23 190-215 22-44 (54)
126 2hqh_E Restin; beta/BETA struc 20.4 20 0.00069 21.8 -0.1 10 194-203 5-14 (26)
No 1
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=94.11 E-value=0.3 Score=39.17 Aligned_cols=12 Identities=33% Similarity=0.808 Sum_probs=10.2
Q ss_pred Ccccccchhhhc
Q 019130 192 MALCEICGSFLV 203 (345)
Q Consensus 192 m~VCeVCGA~Ls 203 (345)
-.+|+|||.-|.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 578999999876
No 2
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=90.67 E-value=1.2 Score=40.87 Aligned_cols=62 Identities=13% Similarity=0.167 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCC---chhhHHHHHHHHHHHHHHHHHHHHHhh
Q 019130 89 LAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPI---SAEKSEQLSVLEEKIKNLLEQVETLGE 150 (345)
Q Consensus 89 ~~~~L~~li~d~drkI~~~k~RL~~~~e~~~~~~~---~~e~~e~i~~l~ekI~~ll~eaE~LGe 150 (345)
-+.-++.-|.++..+|.+.+.+|............ .......+..++++|..++.++|.+-+
T Consensus 61 ~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~ 125 (256)
T 3na7_A 61 QVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSE 125 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35568889999999999999999653210000000 112234566667777777777766543
No 3
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=89.96 E-value=0.09 Score=52.30 Aligned_cols=8 Identities=25% Similarity=0.322 Sum_probs=3.2
Q ss_pred cchhhhcc
Q 019130 197 ICGSFLVA 204 (345)
Q Consensus 197 VCGA~Ls~ 204 (345)
|+|..|.|
T Consensus 169 i~gr~i~V 176 (437)
T 3pgw_S 169 IDGRRVLV 176 (437)
T ss_pred ECCEEEEE
Confidence 34444433
No 4
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=78.29 E-value=0.43 Score=33.68 Aligned_cols=26 Identities=27% Similarity=0.713 Sum_probs=20.1
Q ss_pred CCCcchhhc-CCChhHhhhhcccCCCCCCCCCcHHH
Q 019130 34 KEVCPFYMV-RFCPHDLFVNTRSDLGPCPRIHDQKL 68 (345)
Q Consensus 34 ~~VCk~yL~-g~CPhdLF~nTK~DlG~C~kiHd~~l 68 (345)
-.||.-|-+ |+||+.+ .||.+||..|
T Consensus 20 ~~iC~~FSayGwCp~G~---------~Cp~SHDiDl 46 (50)
T 2fc6_A 20 TSICDNFSAYGWCPLGP---------QCPQSHDISG 46 (50)
T ss_dssp SCBCSHHHHTCCCTTGG---------GCSSBCCCCC
T ss_pred cchhhhccccccCCCCC---------CCCccccCCC
Confidence 369988876 9998764 6999998643
No 5
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=76.09 E-value=5.4 Score=28.59 Aligned_cols=32 Identities=28% Similarity=0.528 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 019130 131 LSVLEEKIKNLLEQVETLGEAGKVDEAEALMR 162 (345)
Q Consensus 131 i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~ 162 (345)
|.+|..+-..|-.+||+||--|+|......+.
T Consensus 27 ieelkkkweelkkkieelggggevkkveeevk 58 (67)
T 1lq7_A 27 IEELKKKWEELKKKIEELGGGGEVKKVEEEVK 58 (67)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcchhHHHHHHH
Confidence 55666667777788888888888865444333
No 6
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=73.50 E-value=31 Score=26.99 Aligned_cols=86 Identities=12% Similarity=0.109 Sum_probs=46.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 019130 82 VPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALM 161 (345)
Q Consensus 82 ~~~yE~e~~~~L~~li~d~drkI~~~k~RL~~~~e~~~~~~~~~e~~e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~ 161 (345)
|.+||.+|-.++..+.. +|.... ..+.++. ......+...|.+.++-|..|--++..+| |....=-.++
T Consensus 3 F~~YE~df~~~~~~i~~----~l~~~~---~~~ge~R--k~~i~~ie~~ldEA~ell~qMelE~~~~~--~p~~~R~~~~ 71 (97)
T 3onj_A 3 LISYESDFKTTLEQAKA----SLAEAP---SQPLSQR--NTTLKHVEQQQDELFDLLDQMDVEVNNSI--GDASERATYK 71 (97)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHGG---GSCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHh---ccChHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 56899999766555544 443321 0000000 01122334445555555555555555554 2444445778
Q ss_pred HHHHHHHHHHHH-HHhhh
Q 019130 162 RKVEILNVEKTT-LTQQS 178 (345)
Q Consensus 162 ~~ve~Lk~ek~~-le~~~ 178 (345)
.++...+.+... |+.++
T Consensus 72 ~klr~Yk~dl~~~lk~~l 89 (97)
T 3onj_A 72 AKLREWKKTIQSDIKRPL 89 (97)
T ss_dssp HHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888777 76665
No 7
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=73.13 E-value=0.85 Score=35.06 Aligned_cols=31 Identities=26% Similarity=0.624 Sum_probs=24.7
Q ss_pred cccccchhhhcccchHHHhhhhhccccccchH
Q 019130 193 ALCEICGSFLVANDAAERTQSHISGKQHIGYG 224 (345)
Q Consensus 193 ~VCeVCGA~Ls~~D~d~Rl~dH~~GK~HlGy~ 224 (345)
.-|+.|.+||. .|+..=...|..|+.|++=+
T Consensus 4 YyCdYCd~~lt-~Ds~s~Rk~H~~G~kH~~nv 34 (77)
T 3cw1_L 4 FYCDYCDTYLT-HDSPSVRKTHCSGRKHKENV 34 (77)
T ss_pred cccccCCceec-CCCHHHHHHHHccHHHHHHH
Confidence 35999999964 67777567999999999743
No 8
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.67 E-value=2.6 Score=31.70 Aligned_cols=29 Identities=21% Similarity=0.623 Sum_probs=19.8
Q ss_pred CCCCCCCcchhhcCCChhHhhhhcccCCCCCCCCCcHH
Q 019130 30 KWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQK 67 (345)
Q Consensus 30 ~~~D~~VCk~yL~g~CPhdLF~nTK~DlG~C~kiHd~~ 67 (345)
.++-..||++||-|.|. +.| .|+-.|+..
T Consensus 6 ~~~k~~~C~~fl~G~C~-------~G~--~C~fsH~~~ 34 (77)
T 2d9n_A 6 SGEKTVVCKHWLRGLCK-------KGD--QCEFLHEYD 34 (77)
T ss_dssp SCCTTSBCHHHHTTCCS-------CTT--SSSSBCSCC
T ss_pred CCCcceeCHhHccCcCC-------CCC--CCCCccccc
Confidence 45666789999999992 222 577777654
No 9
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=67.25 E-value=11 Score=26.92 Aligned_cols=41 Identities=39% Similarity=0.574 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Q 019130 131 LSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTL 174 (345)
Q Consensus 131 i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~l 174 (345)
+..|++++..|-+++..||--|.|++- -.+-++|+.+.++|
T Consensus 4 vkaleekvkaleekvkalggggrieel---kkkweelkkkieel 44 (67)
T 1lq7_A 4 VKALEEKVKALEEKVKALGGGGRIEEL---KKKWEELKKKIEEL 44 (67)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSSHHHH---HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhcCCccHHHH---HHHHHHHHHHHHHh
Confidence 567888999999999999999999854 34555566555444
No 10
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=66.90 E-value=2 Score=31.86 Aligned_cols=25 Identities=36% Similarity=0.611 Sum_probs=17.7
Q ss_pred CCCCCcchhhcCCChhHhhhhcccCCC--CCCCCCcH
Q 019130 32 DDKEVCPFYMVRFCPHDLFVNTRSDLG--PCPRIHDQ 66 (345)
Q Consensus 32 ~D~~VCk~yL~g~CPhdLF~nTK~DlG--~C~kiHd~ 66 (345)
+--.||++||-|.| .-| .|+-.|++
T Consensus 4 ~k~~vC~~f~~G~C----------~rg~~~C~f~H~~ 30 (70)
T 3d2q_A 4 DRLEVCREYQRGNC----------NRGENDCRFAHPA 30 (70)
T ss_dssp CEEEBCHHHHTTCC----------SSCTTTCSSBCCC
T ss_pred ccchhCHHHhcCCC----------CCCCCCCCCccCc
Confidence 34469999999999 334 47777754
No 11
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=66.27 E-value=24 Score=27.66 Aligned_cols=72 Identities=24% Similarity=0.305 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcC----CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 019130 92 FCEKLVMDLDRRVRRGRERLSQEV----EPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEIL 167 (345)
Q Consensus 92 ~L~~li~d~drkI~~~k~RL~~~~----e~~~~~~~~~e~~e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~L 167 (345)
.+-.+|.++|.++......+.+-. .... ..+++ .+...+ .+|...+.++..|+++ +|.-|..+...|+..
T Consensus 22 r~~~~irelD~~~~~~~~~i~~~~~~~~~~~~--~~~~~--~r~~~l-~~I~~~~~~~~~l~dE-Kv~lA~~~~dlvdkh 95 (104)
T 4afl_A 22 RNFQLMRDLDQRTEDLKAEIDKLATEYMSSAR--SLSSE--EKLALL-KQIQEAYGKCKEFGDD-KVQLAMQTYEMVDKH 95 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCS--CCCHH--HHHHHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCChh--hhHHHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 344567777777766666554321 0011 12221 223344 6888888888888876 566666666555554
Q ss_pred HH
Q 019130 168 NV 169 (345)
Q Consensus 168 k~ 169 (345)
-.
T Consensus 96 ir 97 (104)
T 4afl_A 96 IR 97 (104)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 12
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=65.68 E-value=44 Score=25.76 Aligned_cols=56 Identities=9% Similarity=0.131 Sum_probs=45.0
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 019130 122 PISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQ 177 (345)
Q Consensus 122 ~~~~e~~e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~le~~ 177 (345)
...++..+.|...+.-|+.|.++.+...++|+-.+.-.....++..+.-...|...
T Consensus 22 G~~~~lrq~I~DKQ~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r~ 77 (90)
T 4b6x_A 22 GAGAALRQEIEDKQLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQRR 77 (90)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 35578889999999999999999999999999988777666666666665555544
No 13
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.45 E-value=3.5 Score=32.72 Aligned_cols=13 Identities=31% Similarity=0.618 Sum_probs=9.9
Q ss_pred CCcchhhcCCChh
Q 019130 35 EVCPFYMVRFCPH 47 (345)
Q Consensus 35 ~VCk~yL~g~CPh 47 (345)
.||++||-|.|..
T Consensus 21 ~VCr~FlrG~C~r 33 (98)
T 2e5s_A 21 EVCREFQRGNCAR 33 (98)
T ss_dssp EBCSHHHHTCCSS
T ss_pred hhhHHHhcCcCCC
Confidence 5888888888854
No 14
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=65.15 E-value=2.1 Score=33.89 Aligned_cols=23 Identities=39% Similarity=1.168 Sum_probs=17.6
Q ss_pred CCCCcchhhcCCChhHhhhhcccCCC-CCCCCCc
Q 019130 33 DKEVCPFYMVRFCPHDLFVNTRSDLG-PCPRIHD 65 (345)
Q Consensus 33 D~~VCk~yL~g~CPhdLF~nTK~DlG-~C~kiHd 65 (345)
-..||++|+-|.|.+ | .|+-.|+
T Consensus 12 k~~lC~~f~~G~C~~----------G~~C~f~H~ 35 (98)
T 2cqe_A 12 KRELCKFYITGFCAR----------AENCPYMHG 35 (98)
T ss_dssp CCSBCTTTTTTCCSC----------STTCSSBSS
T ss_pred CCccCcccccCcCCC----------CCCCCCCCC
Confidence 457999999999954 4 4777776
No 15
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=64.99 E-value=49 Score=26.04 Aligned_cols=82 Identities=16% Similarity=0.121 Sum_probs=40.0
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHHHHHH---HHHHHHHHHhhcCCHHHH
Q 019130 81 YVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIK---NLLEQVETLGEAGKVDEA 157 (345)
Q Consensus 81 ~~~~yE~e~~~~L~~li~d~drkI~~~k~RL~~~~e~~~~~~~~~e~~e~i~~l~ekI~---~ll~eaE~LGeeG~VdeA 157 (345)
.|.+||.+|-.++..+-..|.. . .. .. ...+....|..++..|. .|+.+++.-........=
T Consensus 16 lFe~YE~df~~l~~~i~~kl~~----i----~~----~~---~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R 80 (102)
T 2qyw_A 16 HFEKLHEIFRGLLEDLQGVPER----L----LG----TA---GTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFR 80 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----H----HT----CC---CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----h----cc----cC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 3458999998776666554442 2 11 00 11222233433333332 233332222222233334
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 019130 158 EALMRKVEILNVEKTTLTQQ 177 (345)
Q Consensus 158 ~~l~~~ve~Lk~ek~~le~~ 177 (345)
..+..++...+.+.+.|+.+
T Consensus 81 ~~~~~klr~Yk~dL~~lk~e 100 (102)
T 2qyw_A 81 NPMMSKLRNYRKDLAKLHRE 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 56777777777777766654
No 16
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=64.55 E-value=17 Score=29.61 Aligned_cols=66 Identities=18% Similarity=0.270 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhcCcccccchhhhcccchH
Q 019130 131 LSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVANDAA 208 (345)
Q Consensus 131 i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~le~~~~~~~~~~~~~~qkm~VCeVCGA~Ls~~D~d 208 (345)
.....+.|+-|.+-|..+ ..++.+-|...+..+..+-.+- . .-.+..-+-.+|.-||++|+-+-|-
T Consensus 16 ~~ia~~Ri~~L~~~A~~~-~~~~p~lSr~Y~~~~~~is~k~-~----------irlp~~~KR~~Ck~C~s~LiPG~t~ 81 (120)
T 1x0t_A 16 KKIAIERIDTLFTLAERV-ARYSPDLAKRYVELALEIQKKA-K----------VKIPRKWKRRYCKRCHTFLIPGVNA 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHH-T----------CCCCTTTTTSBCTTTCCBCCBTTTE
T ss_pred hHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHh-c----------cCCCHHHHHHhccCCCCEeECCCce
Confidence 345577888999999888 6777877777776665553211 0 1223456778999999999977653
No 17
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=61.91 E-value=3.3 Score=30.94 Aligned_cols=28 Identities=21% Similarity=0.615 Sum_probs=19.7
Q ss_pred CCCCCCCcchhhcCCChhHhhhhcccCCCCCCCCCcH
Q 019130 30 KWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQ 66 (345)
Q Consensus 30 ~~~D~~VCk~yL~g~CPhdLF~nTK~DlG~C~kiHd~ 66 (345)
.+.-..||++||-|.|.. .| .|+-.|+.
T Consensus 12 ~~~k~~vCk~fl~G~C~~-------G~--~C~fsH~~ 39 (72)
T 2rhk_C 12 SGEKTVVCKHWLRGLCKK-------GD--QCEFLHEY 39 (72)
T ss_dssp SCCCCSBCHHHHTTCCCC-------GG--GSSSBCSC
T ss_pred CCCcCeeCHHHhcCCCCC-------CC--CCCCcccc
Confidence 456678999999999932 12 37777764
No 18
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=61.56 E-value=58 Score=32.67 Aligned_cols=94 Identities=9% Similarity=0.010 Sum_probs=45.7
Q ss_pred hhHHHH---HHHHHHHHHHHHHHHHHHHHhhhhcCCCCC-CCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH-
Q 019130 84 KFEAEL---AQFCEKLVMDLDRRVRRGRERLSQEVEPAP-PPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAE- 158 (345)
Q Consensus 84 ~yE~e~---~~~L~~li~d~drkI~~~k~RL~~~~e~~~-~~~~~~e~~e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~- 158 (345)
.|+..+ ++.|+..|..+...+..+..-+..-+.... ......++...|.++.++|......|++.... .+....
T Consensus 93 k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~-~~~~~i~ 171 (464)
T 1m1j_B 93 KQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDN-NIPSSLR 171 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHH
T ss_pred HhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhc-cchhHHH
Confidence 455533 788888888888877766555321100000 00011223334555555555555555444322 222222
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 019130 159 ALMRKVEILNVEKTTLTQQS 178 (345)
Q Consensus 159 ~l~~~ve~Lk~ek~~le~~~ 178 (345)
.|...++.|+.+...|+..+
T Consensus 172 ~L~~~~~~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 172 VLRAVIDSLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 23455666666666666544
No 19
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=61.54 E-value=44 Score=26.31 Aligned_cols=21 Identities=10% Similarity=0.047 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 019130 158 EALMRKVEILNVEKTTLTQQS 178 (345)
Q Consensus 158 ~~l~~~ve~Lk~ek~~le~~~ 178 (345)
-.+..++...+.+.+.|+.++
T Consensus 70 ~~~~~klr~Yk~dL~~lk~el 90 (102)
T 1vcs_A 70 GMYSNRMRSYKQEMGKLETDF 90 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478888999988888888776
No 20
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=60.48 E-value=3.5 Score=31.83 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=10.3
Q ss_pred CCCCCCCCCcHH-HHHHH
Q 019130 56 DLGPCPRIHDQK-LKESF 72 (345)
Q Consensus 56 DlG~C~kiHd~~-lK~~Y 72 (345)
.-|.|+-+|.+. |++.+
T Consensus 55 ~r~~C~y~H~~~~l~~~~ 72 (83)
T 3d2n_A 55 SRENCKYLHPPPHLKTQL 72 (83)
T ss_dssp CCSSCSSCCCCHHHHHHH
T ss_pred cCCCcceeCChHHHHHHH
Confidence 345788888864 44433
No 21
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=59.39 E-value=84 Score=28.37 Aligned_cols=60 Identities=7% Similarity=0.051 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 019130 92 FCEKLVMDLDRRVRRGRERLSQEVEPA---PPPPISAEKSEQLSVLEEKIKNLLEQVETLGEA 151 (345)
Q Consensus 92 ~L~~li~d~drkI~~~k~RL~~~~e~~---~~~~~~~e~~e~i~~l~ekI~~ll~eaE~LGee 151 (345)
.+..-|...+.-|.....++....... ..+-.-.....+|..+..+|..+-.++-++.+.
T Consensus 57 d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ 119 (256)
T 3na7_A 57 ALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNE 119 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555554432111 101111234455555556666555555555554
No 22
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=58.74 E-value=51 Score=25.15 Aligned_cols=52 Identities=12% Similarity=0.217 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh--------cCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 019130 126 EKSEQLSVLEEKIKNLLEQVETLGE--------AGKVDEAEALMRKVEILNVEKTTLTQQ 177 (345)
Q Consensus 126 e~~e~i~~l~ekI~~ll~eaE~LGe--------eG~VdeA~~l~~~ve~Lk~ek~~le~~ 177 (345)
..+.++..|..+|..|-+++..|-+ ..+.+..+.++.+++.+..+.+.+...
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~er 78 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFER 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666555544332 246777888888888888777766544
No 23
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=58.18 E-value=88 Score=26.70 Aligned_cols=121 Identities=15% Similarity=0.073 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 019130 86 EAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVE 165 (345)
Q Consensus 86 E~e~~~~L~~li~d~drkI~~~k~RL~~~~e~~~~~~~~~e~~e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve 165 (345)
+..++.-+-+++.+++|-=.-+.. ++........... ......|..+...+..++..+-..-..++++.|..+...-+
T Consensus 76 dlr~i~~~l~i~~dlERIgD~a~~-Ia~~~~~~~~~~~-~~~~~~l~~m~~~v~~~l~~a~~a~~~~d~~~a~~v~~~d~ 153 (216)
T 2i0m_A 76 DLRFVISIMSSCSDLERMGDHMAG-IAKAVLQLKENQL-APDEEQLHQMGKLSLSMLADLLVAFPLHQASKAISIAQKDE 153 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSCCSSCC-C--CHHHHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccCC-chHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444555555666777665444332 2221000110011 11115688888899999999999999999987766665333
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHhhcCccccc--chhhhcccchHHHhhhhhc
Q 019130 166 ILNVEKTTLTQQSQNDKVLMMAQEKKMALCEI--CGSFLVANDAAERTQSHIS 216 (345)
Q Consensus 166 ~Lk~ek~~le~~~~~~~~~~~~~~qkm~VCeV--CGA~Ls~~D~d~Rl~dH~~ 216 (345)
. .+.+..++ .... . ..-....|.+ +-.|+.+..+-+|++||.+
T Consensus 154 ~----iD~l~~~~-~~~~-~--~~l~~~~~~~~~~~~~~~i~~~lERI~Dha~ 198 (216)
T 2i0m_A 154 Q----IDQYYYAL-SKEI-I--GLMKDQETSIPNGTQYLYIIGHLERFADYIA 198 (216)
T ss_dssp H----HHHHHHHH-HHHH-H--HTTTSCC-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHH-HHHH-H--HHHHhCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 33333322 1110 0 0001125654 3346778889999999975
No 24
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=55.68 E-value=57 Score=28.54 Aligned_cols=81 Identities=9% Similarity=-0.015 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhcCcccc--cchhhhcccc
Q 019130 129 EQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCE--ICGSFLVAND 206 (345)
Q Consensus 129 e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~le~~~~~~~~~~~~~~qkm~VCe--VCGA~Ls~~D 206 (345)
..|..+-..+..++..+-..-..++++.|..+...-+.+-.....+.... ... + . . ..|. .+-.|+.+..
T Consensus 117 ~~l~~m~~~v~~~l~~a~~a~~~~d~~~A~~v~~~d~~iD~l~~~l~~~~-~~~--l--~-~--~~~~~~~~~~~l~i~~ 188 (235)
T 1sum_B 117 EDIPAMANQTSEMLKFALRMFADVNVEKSFEVCRMDSKVDDLYEKVREEL-LLY--M--M-E--SPKYVKRALLLLEIAG 188 (235)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHSCCHHHHTHHHHHHHHHHHHHHHHHHHH-HHH--H--H-H--CGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--H--H-h--CCCcHHHHHHHHHHHH
Confidence 45788888888999999888889999877666654333332222222221 110 0 1 1 2454 3455777888
Q ss_pred hHHHhhhhhcc
Q 019130 207 AAERTQSHISG 217 (345)
Q Consensus 207 ~d~Rl~dH~~G 217 (345)
+-+|++||..-
T Consensus 189 ~lERI~Dha~n 199 (235)
T 1sum_B 189 NIEIIADYATN 199 (235)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999763
No 25
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=55.63 E-value=29 Score=26.70 Aligned_cols=13 Identities=23% Similarity=0.284 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 019130 160 LMRKVEILNVEKT 172 (345)
Q Consensus 160 l~~~ve~Lk~ek~ 172 (345)
+..+.+.|+.+..
T Consensus 53 L~~en~qLk~E~~ 65 (81)
T 2jee_A 53 LERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 26
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4
Probab=54.23 E-value=3 Score=34.34 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=25.0
Q ss_pred cCcccccchhhhcccchHHHhhhhhccccccchHH
Q 019130 191 KMALCEICGSFLVANDAAERTQSHISGKQHIGYGM 225 (345)
Q Consensus 191 km~VCeVCGA~Ls~~D~d~Rl~dH~~GK~HlGy~k 225 (345)
...-|++|...+. +..=+..|+.||.|.-=++
T Consensus 92 ~~~~C~~C~~~f~---s~~~~~~H~~gk~H~~~~~ 123 (127)
T 1zu1_A 92 RSKCCPVCNMTFS---SPVVAESHYIGKTHIKNLR 123 (127)
T ss_dssp TTTEETTTTEECS---SHHHHHHHHTSHHHHHHHH
T ss_pred CCeEcCCCCCEeC---CHHHHHHHHCCHHHHHHHH
Confidence 3467999998544 7788999999999975443
No 27
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=53.03 E-value=5 Score=29.59 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=20.0
Q ss_pred CCCcchhhcCCChhHhhhhcccCCCCCCCCCcHHH
Q 019130 34 KEVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQKL 68 (345)
Q Consensus 34 ~~VCk~yL~g~CPhdLF~nTK~DlG~C~kiHd~~l 68 (345)
-.||++||=|.|+ -|.|+-+|.+..
T Consensus 42 ~~vC~~flkG~C~----------r~~C~y~H~~~~ 66 (70)
T 3d2q_A 42 VTVCMDYIKGRCS----------REKCKYFHPPAH 66 (70)
T ss_dssp EEBCHHHHTTCCC----------CTTCCSBCCCHH
T ss_pred ceeccccCcCCCC----------CCCcCeeCCHHH
Confidence 3589999999993 358999998743
No 28
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=51.69 E-value=20 Score=35.75 Aligned_cols=49 Identities=10% Similarity=0.183 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019130 128 SEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178 (345)
Q Consensus 128 ~e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~le~~~ 178 (345)
..++..|..+.+.+.++|-+|...|+ ++..+++++..|+.+.+.|++++
T Consensus 44 ~~~~~~l~~~~n~~sk~i~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~ 92 (455)
T 2dq0_A 44 LKEINRLRHERNKIAVEIGKRRKKGE--PVDELLAKSREIVKRIGELENEV 92 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCC--CTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc--cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777666663 46677777777777777776654
No 29
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=51.37 E-value=8.3 Score=30.11 Aligned_cols=44 Identities=27% Similarity=0.488 Sum_probs=27.1
Q ss_pred CCCCCCCcchhhcCCChhH------------------------hhhhcccCCCCCCCCCcHH-HHHHHh
Q 019130 30 KWDDKEVCPFYMVRFCPHD------------------------LFVNTRSDLGPCPRIHDQK-LKESFE 73 (345)
Q Consensus 30 ~~~D~~VCk~yL~g~CPhd------------------------LF~nTK~DlG~C~kiHd~~-lK~~Ye 73 (345)
.|.--.||+.||-|.|.-. -|.+++=.-+.|+-+|.+. |+++++
T Consensus 13 ~~~~~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v~~~~~~vC~dflkG~C~r~~Cky~H~~~hl~~~~~ 81 (89)
T 2rpp_A 13 KWLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSLKGRCSRENCKYLHPPTHLKTQLE 81 (89)
T ss_dssp SSSEECBCHHHHHTCCCCCTTTSSSBCCCSSSCCBTTBEEBCHHHHHTCCCCTTCCSBCCCHHHHHHHH
T ss_pred CcchhhhchHHhcCCCCCCCCCCCCcCCCccccccCCceeeehhhhhCcCCCCCcceecCHHHHHHHHH
Confidence 3555569999999888543 1444443445778888764 444444
No 30
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=50.09 E-value=25 Score=35.43 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019130 129 EQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178 (345)
Q Consensus 129 e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~le~~~ 178 (345)
.++..|..+.+.+.++|-+|...|+ ++..+++++..|+.+.+.|+.++
T Consensus 47 ~~~~~l~~~rn~~sk~i~~~k~~~~--~~~~l~~~~~~l~~~i~~le~~~ 94 (485)
T 3qne_A 47 FDLDEHNKKLNSVQKEIGKRFKAKE--DAKDLIAEKEKLSNEKKEIIEKE 94 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666655555553 35567777777777777766654
No 31
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=49.81 E-value=54 Score=33.46 Aligned_cols=22 Identities=27% Similarity=0.646 Sum_probs=14.4
Q ss_pred CCCCcchhhcCCChhHhhhhcccCCCC-CC
Q 019130 33 DKEVCPFYMVRFCPHDLFVNTRSDLGP-CP 61 (345)
Q Consensus 33 D~~VCk~yL~g~CPhdLF~nTK~DlG~-C~ 61 (345)
....||-.=--||..+ |+|+ ||
T Consensus 24 ~qs~Cke~~WPfCaDe-------DwGvkCP 46 (562)
T 3ghg_A 24 HQSACKDSDWPFCSDE-------DWNYKCP 46 (562)
T ss_dssp ---CCCCCCCCBCCSS-------SBTTEEE
T ss_pred cccccccCCCCccccc-------ccCCCCC
Confidence 4678887777888544 7885 87
No 32
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=49.19 E-value=45 Score=30.01 Aligned_cols=72 Identities=17% Similarity=0.169 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhcCcccccchhhhcccchH
Q 019130 129 EQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVANDAA 208 (345)
Q Consensus 129 e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~le~~~~~~~~~~~~~~qkm~VCeVCGA~Ls~~D~d 208 (345)
+++..+..+|..|-+++++|-+ .-+.+.++.+-++. ..+.+. ....+.-+-.++..+|-+.|+-
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d-----~~lR~~AEfeN~Rk---R~~rE~--------e~~~~~a~e~~~~~LLpVlDnl 122 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEH-----RYLRLYADFENFRR---RTRQEM--------EAAEKYRAQSLASDLLPVLDNF 122 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH---HHHHHH--------HHHHHHTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH---HHHHHH--------HHHHHHHHHHHHHHHhHHHHHH
Confidence 4455666667666666666532 23334444443332 111111 1223445667899999999999
Q ss_pred HHhhhhhc
Q 019130 209 ERTQSHIS 216 (345)
Q Consensus 209 ~Rl~dH~~ 216 (345)
.|.-.|..
T Consensus 123 erAl~~~~ 130 (213)
T 4ani_A 123 ERALKIET 130 (213)
T ss_dssp HHHHSCCS
T ss_pred HHHHHhcc
Confidence 99766653
No 33
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=48.62 E-value=18 Score=29.70 Aligned_cols=64 Identities=19% Similarity=0.299 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhcCcccccchhhhcccchH
Q 019130 133 VLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVANDAA 208 (345)
Q Consensus 133 ~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~le~~~~~~~~~~~~~~qkm~VCeVCGA~Ls~~D~d 208 (345)
...+.|+-|.+-|..+ ..++.+-|...+..+..+-.+ . . .-.+..-+-.+|.-||++|+-+-|-
T Consensus 13 ia~~Ri~~L~~~A~~~-~~~~p~LSr~Y~~~~~~Is~K-------~-~---irlp~~~KR~~Ck~C~s~LIPG~t~ 76 (123)
T 2k3r_A 13 IAKERIDILFSLAERV-FPYSPELAKRYVELALLVQQK-------A-K---VKIPRKWKRRYCKKCHAFLVPGINA 76 (123)
T ss_dssp --CHHHHHHHHHHHHH-HHHCHHHHHHHHHHHHHHHHH-------H-T---CCCSSTTTTSBCTTTCCBCCBTTTE
T ss_pred HHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHH-------h-c---cCCCHHHHHHhccCCCCEeECCCce
Confidence 4467788888888887 556666676666665544321 0 0 1123456778999999999977554
No 34
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4
Probab=48.37 E-value=4.1 Score=33.49 Aligned_cols=28 Identities=18% Similarity=0.593 Sum_probs=23.4
Q ss_pred cCcccccchhhhcccchHHHhhhhhcccccc
Q 019130 191 KMALCEICGSFLVANDAAERTQSHISGKQHI 221 (345)
Q Consensus 191 km~VCeVCGA~Ls~~D~d~Rl~dH~~GK~Hl 221 (345)
+--.|.||.+.+. +..=+..|+.||.|.
T Consensus 31 ~~~~C~~C~v~~~---S~s~~~~H~~gkkH~ 58 (127)
T 1zu1_A 31 SDTQCKVCSAVLI---SESQKLAHYQSRKHA 58 (127)
T ss_dssp CSSEETTTTEECC---SHHHHHHHHHCHHHH
T ss_pred CCCcCcCCCCEeC---CHHHHHHHHCcHHHH
Confidence 4468999998655 778899999999997
No 35
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=45.73 E-value=44 Score=32.79 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019130 131 LSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178 (345)
Q Consensus 131 i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~le~~~ 178 (345)
|.+|+.+|..+..+.+.+...++++.|..+..+.+.|+.+.+.++...
T Consensus 396 i~~l~~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~ 443 (468)
T 3pxg_A 396 LKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSW 443 (468)
T ss_dssp THHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557778888888888888889999999999999999999888877654
No 36
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=45.10 E-value=54 Score=32.32 Aligned_cols=24 Identities=8% Similarity=-0.159 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 019130 88 ELAQFCEKLVMDLDRRVRRGRERL 111 (345)
Q Consensus 88 e~~~~L~~li~d~drkI~~~k~RL 111 (345)
.-|+.|+.+|.+++.....+..-+
T Consensus 38 ~~l~~LE~~l~elsn~ts~v~~Lv 61 (409)
T 1m1j_C 38 GELLEIEGLLQQATNSTGSIEYLI 61 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667888888888877776544
No 37
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=44.20 E-value=80 Score=22.16 Aligned_cols=41 Identities=24% Similarity=0.343 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Q 019130 134 LEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTL 174 (345)
Q Consensus 134 l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~l 174 (345)
|.++|..+-.-|+++-..|..|+..-|-.-+.+|+.+...+
T Consensus 7 L~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~~~ 47 (51)
T 1yzm_A 7 LLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQ 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence 55666666777788888898887766666666666655444
No 38
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=42.89 E-value=6.7 Score=25.40 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=18.0
Q ss_pred cccccchhhhcccchHHHhhhhhc
Q 019130 193 ALCEICGSFLVANDAAERTQSHIS 216 (345)
Q Consensus 193 ~VCeVCGA~Ls~~D~d~Rl~dH~~ 216 (345)
.+|++|-+.|. +...|..||.
T Consensus 6 FiCP~C~~~l~---s~~~L~~Hye 26 (34)
T 3mjh_B 6 FICPQCMKSLG---SADELFKHYE 26 (34)
T ss_dssp EECTTTCCEES---SHHHHHHHHH
T ss_pred cCCcHHHHHcC---CHHHHHHHHH
Confidence 78999998887 7788999984
No 39
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=42.63 E-value=5 Score=28.78 Aligned_cols=31 Identities=32% Similarity=0.428 Sum_probs=23.6
Q ss_pred cccccchhhhcccchHHHhhhhhccccccchHHH
Q 019130 193 ALCEICGSFLVANDAAERTQSHISGKQHIGYGMV 226 (345)
Q Consensus 193 ~VCeVCGA~Ls~~D~d~Rl~dH~~GK~HlGy~kI 226 (345)
.-|..||+- .++--=|.||+--++||+.+++
T Consensus 14 ~eC~lC~vk---Ys~r~slqDHIFs~qHI~~vk~ 44 (55)
T 2yrk_A 14 PECTLCGVK---YSARLSIRDHIFSKQHISKVRE 44 (55)
T ss_dssp SCCTTTTCC---CCSSSCHHHHHTSHHHHHHHHH
T ss_pred ccccccCcc---cccccchhhhhccHHHHHHHHH
Confidence 469999864 3344558999999999987764
No 40
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=42.48 E-value=44 Score=33.72 Aligned_cols=50 Identities=22% Similarity=0.193 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC------HHHHHHHHHHHHHHHHHHHHHHhhh
Q 019130 129 EQLSVLEEKIKNLLEQVETLGEAGK------VDEAEALMRKVEILNVEKTTLTQQS 178 (345)
Q Consensus 129 e~i~~l~ekI~~ll~eaE~LGeeG~------VdeA~~l~~~ve~Lk~ek~~le~~~ 178 (345)
.++..|..+.+.+.++|-++...|+ -+++..+++++..|+++.+.|+++.
T Consensus 84 ~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~ 139 (501)
T 1wle_A 84 EQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKE 139 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666655554442 1467778888888888888777654
No 41
>2h8b_A Insulin-like 3; insulin/relaxin suparfamily fold, hormone/growth factor complex; NMR {Synthetic} PDB: 2k6t_A 2k6u_A
Probab=42.32 E-value=5.2 Score=24.19 Aligned_cols=9 Identities=22% Similarity=0.663 Sum_probs=7.2
Q ss_pred hhhcCCChh
Q 019130 39 FYMVRFCPH 47 (345)
Q Consensus 39 ~yL~g~CPh 47 (345)
--|++||||
T Consensus 18 QDLL~lCPh 26 (26)
T 2h8b_A 18 QDLLTLCPY 26 (26)
T ss_dssp HHHHTTCCC
T ss_pred HHHHhhCCC
Confidence 358899998
No 42
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=41.64 E-value=64 Score=26.55 Aligned_cols=49 Identities=16% Similarity=0.254 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 019130 129 EQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQ 177 (345)
Q Consensus 129 e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~le~~ 177 (345)
.+|..|+.++..+--+...+-..|+.+-.-.+..+++.|..++..|...
T Consensus 10 ~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 10 NEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666666666666666666555543
No 43
>1skh_A Major prion protein 2; coil-helix-coil, unknown function; NMR {Bos taurus}
Probab=41.59 E-value=4.2 Score=25.64 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=20.8
Q ss_pred hhcCCChhHhhhhcccCCCCCCC
Q 019130 40 YMVRFCPHDLFVNTRSDLGPCPR 62 (345)
Q Consensus 40 yL~g~CPhdLF~nTK~DlG~C~k 62 (345)
..+||+-.-||+-|=+|+|-|.|
T Consensus 4 ~~~~cwilvLfva~wsdvglcKK 26 (30)
T 1skh_A 4 SKIGSWILVLFVAMWSDVGLCKK 26 (30)
T ss_dssp TTTTTHHHHHHHHHHHHHTTSSS
T ss_pred ccccHHHHHHHHHHHhHHHHhhc
Confidence 35799999999999999999987
No 44
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=41.21 E-value=87 Score=21.71 Aligned_cols=39 Identities=28% Similarity=0.379 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Q 019130 134 LEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKT 172 (345)
Q Consensus 134 l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~ 172 (345)
|.++|..+-.-|+.+...|..|+...|-.-+.+|..|..
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~ 44 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEYF 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 456666666777888888998887777777777665543
No 45
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=39.74 E-value=89 Score=23.27 Aligned_cols=42 Identities=24% Similarity=0.321 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Q 019130 133 VLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTL 174 (345)
Q Consensus 133 ~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~l 174 (345)
=|.++|..+-.-|+++-..|+.|+..-|-.-+.+|+.+...+
T Consensus 24 PL~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~~~ 65 (69)
T 1z0k_B 24 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQ 65 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777888888998887666666666665555443
No 46
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=38.42 E-value=32 Score=22.94 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 019130 136 EKIKNLLEQVETLGEAGKVDEAEALMRKVEI 166 (345)
Q Consensus 136 ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~ 166 (345)
..|..+-++|...-.+|+++.+..|-.+++.
T Consensus 8 d~I~aiEQqiyvA~seGd~etv~~Le~QL~~ 38 (40)
T 1gp8_A 8 ANKDAIRKQMDAAASKGDVETYRKLKAKLKG 38 (40)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 4566777889999999999988776655543
No 47
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=37.80 E-value=86 Score=25.48 Aligned_cols=51 Identities=20% Similarity=0.175 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 019130 95 KLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRK 163 (345)
Q Consensus 95 ~li~d~drkI~~~k~RL~~~~e~~~~~~~~~e~~e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ 163 (345)
+-+.|+++|+..=-..|.... ..+.+ ...|.++-.+...|+.+.|+.+...
T Consensus 36 ~~~~D~~KRL~~LfdkLn~~~-------Ls~~v-----------~~~L~~l~~al~~~dy~~A~~ih~~ 86 (118)
T 2yru_A 36 QVCDDISRRLALLREQWAGGK-------LSIPV-----------KKRMALLVQELLHHQWDAADDIHRS 86 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-------SCHHH-----------HHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCC-------CCHHH-----------HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 335667777766666664322 11222 2333444455567788887776543
No 48
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=37.53 E-value=12 Score=21.88 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=15.3
Q ss_pred hcCcccccchhhhcccchHHHhhhhh
Q 019130 190 KKMALCEICGSFLVANDAAERTQSHI 215 (345)
Q Consensus 190 qkm~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (345)
.+..+|++||.-... ..-|..|.
T Consensus 5 ~k~~~C~~C~k~f~~---~~~l~~H~ 27 (35)
T 1srk_A 5 KRPFVCRICLSAFTT---KANCARHL 27 (35)
T ss_dssp CSCEECSSSCCEESS---HHHHHHHH
T ss_pred CcCeeCCCCCcccCC---HHHHHHHH
Confidence 356789999987663 33455554
No 49
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=37.12 E-value=1.4e+02 Score=28.78 Aligned_cols=53 Identities=25% Similarity=0.248 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH-------HhhcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019130 125 AEKSEQLSVLEEKIKNLLEQVET-------LGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178 (345)
Q Consensus 125 ~e~~e~i~~l~ekI~~ll~eaE~-------LGeeG~VdeA~~l~~~ve~Lk~ek~~le~~~ 178 (345)
..++++|.+++.....+-+++.. |.+.=+-..||++ ++|++|..+...|.+++
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 459 (471)
T 3mq9_A 400 HLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQ-KKVEELEGEITTLNHKL 459 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34455555555544444333332 2222222233322 45666666666655554
No 50
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=36.28 E-value=2.9e+02 Score=27.20 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 019130 157 AEALMRKVEILNVEKTTLTQQS 178 (345)
Q Consensus 157 A~~l~~~ve~Lk~ek~~le~~~ 178 (345)
+...+++.+.++.++..++...
T Consensus 532 ~~~~~~~~~~~~~~~~~le~~~ 553 (597)
T 3oja_B 532 ADAKQKETEDLEQENIALEKQL 553 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcchhhHHhhhHHHHHHH
Confidence 3445556666666666665543
No 51
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=36.00 E-value=1.1e+02 Score=26.90 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=22.4
Q ss_pred hhcCcccccchhhhcccchHHHhhhhhc
Q 019130 189 EKKMALCEICGSFLVANDAAERTQSHIS 216 (345)
Q Consensus 189 ~qkm~VCeVCGA~Ls~~D~d~Rl~dH~~ 216 (345)
..+.-+..++..+|-+.|+-.|.-.|..
T Consensus 83 ~~~~a~~~~~~~LLpv~DnlerAl~~~~ 110 (197)
T 1dkg_A 83 AHKFALEKFINELLPVIDSLDRALEVAD 110 (197)
T ss_dssp HHHTSGGGHHHHSHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhc
Confidence 3455778899999999999999777763
No 52
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=35.76 E-value=71 Score=27.40 Aligned_cols=11 Identities=45% Similarity=1.041 Sum_probs=7.4
Q ss_pred cCcccccchhh
Q 019130 191 KMALCEICGSF 201 (345)
Q Consensus 191 km~VCeVCGA~ 201 (345)
+.-||.|||-.
T Consensus 137 ~~~~C~~CG~i 147 (170)
T 3pwf_A 137 KVYICPICGYT 147 (170)
T ss_dssp CEEECTTTCCE
T ss_pred CeeEeCCCCCe
Confidence 45678888843
No 53
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=35.47 E-value=2.4e+02 Score=25.08 Aligned_cols=49 Identities=18% Similarity=0.163 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 019130 129 EQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQ 177 (345)
Q Consensus 129 e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~le~~ 177 (345)
++...++..|+.+.++.|++..+-+--|.+-+.+=+.-|+++|.++.+.
T Consensus 146 ~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~l 194 (213)
T 1ik9_A 146 KENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSL 194 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4566788888889999999988877777776666677777777766553
No 54
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=35.41 E-value=1.1e+02 Score=29.34 Aligned_cols=19 Identities=16% Similarity=0.055 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 019130 159 ALMRKVEILNVEKTTLTQQ 177 (345)
Q Consensus 159 ~l~~~ve~Lk~ek~~le~~ 177 (345)
+...++..|..+++.+++.
T Consensus 278 k~~~~~~~~~~~~~~~~~~ 296 (426)
T 1lrz_A 278 KAHNKRDNLQQQLDANEQK 296 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 55
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=34.87 E-value=16 Score=19.59 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=12.7
Q ss_pred cccccchhhhcccchHHHhhhhh
Q 019130 193 ALCEICGSFLVANDAAERTQSHI 215 (345)
Q Consensus 193 ~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (345)
.+|++||.-... ..-|..|.
T Consensus 2 ~~C~~C~k~f~~---~~~l~~H~ 21 (27)
T 1znf_A 2 YKCGLCERSFVE---KSALSRHQ 21 (27)
T ss_dssp CBCSSSCCBCSS---HHHHHHHG
T ss_pred ccCCCCCCcCCC---HHHHHHHH
Confidence 479999976553 33456665
No 56
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=34.85 E-value=2.1e+02 Score=24.27 Aligned_cols=80 Identities=9% Similarity=0.039 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhcCcccc--cchhhhcccc
Q 019130 129 EQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCE--ICGSFLVAND 206 (345)
Q Consensus 129 e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~le~~~~~~~~~~~~~~qkm~VCe--VCGA~Ls~~D 206 (345)
..|..+-..+..++..+-..-..++++.|..+...-+.+-..-.++.... ... -....|. .+-.|+.+..
T Consensus 117 ~~l~~m~~~v~~~l~~a~~a~~~~d~~~A~~v~~~d~~iD~l~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~i~~ 188 (217)
T 1xwm_A 117 GPLVLMYRLATDMVSTAIAAYDREDASLAAQIADMDHRVDEQYGEMMASL-LAV-------AKTDAATLAQMNVLALVAR 188 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHH-HSC-------CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-------HHhCcccHHHHHHHHHHHH
Confidence 46888888999999999888889999877666654333332222222221 000 0012443 3344677788
Q ss_pred hHHHhhhhhc
Q 019130 207 AAERTQSHIS 216 (345)
Q Consensus 207 ~d~Rl~dH~~ 216 (345)
+-+|++||.+
T Consensus 189 ~lERI~Dha~ 198 (217)
T 1xwm_A 189 YIERTADHAT 198 (217)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999975
No 57
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=34.32 E-value=12 Score=20.54 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=13.6
Q ss_pred cCcccccchhhhcccchHHHhhhhh
Q 019130 191 KMALCEICGSFLVANDAAERTQSHI 215 (345)
Q Consensus 191 km~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (345)
+...|++||...+ ...-|..|.
T Consensus 2 k~~~C~~C~~~f~---~~~~l~~H~ 23 (30)
T 2m0d_A 2 KPYQCDYCGRSFS---DPTSKMRHL 23 (30)
T ss_dssp CCEECTTTCCEES---CHHHHHHHH
T ss_pred cCccCCCCCcccC---CHHHHHHHH
Confidence 3468999997655 233355554
No 58
>3r8n_T 30S ribosomal protein S20; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_T 3fih_T* 3j18_T* 2wwl_T 3oar_T 3oaq_T 3ofb_T 3ofa_T 3ofp_T 3ofx_T 3ofy_T 3ofo_T 3r8o_T 4a2i_T 4gd1_T 4gd2_T 2qal_T* 1p6g_T 1p87_T 2aw7_T ...
Probab=33.76 E-value=74 Score=24.53 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 019130 133 VLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILN 168 (345)
Q Consensus 133 ~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk 168 (345)
.+-..|...+.+++.+.+.|+.++|+.++..+...-
T Consensus 21 ~~kS~~rT~iKk~~~Ai~~gd~~~A~~~l~~a~~~i 56 (85)
T 3r8n_T 21 SRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIV 56 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 445567788899999999999999999998877664
No 59
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=33.04 E-value=1.4e+02 Score=22.57 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019130 86 EAELAQFCEKLVMDLDRRVRRGRERLS 112 (345)
Q Consensus 86 E~e~~~~L~~li~d~drkI~~~k~RL~ 112 (345)
|..=|.-|..-|..++.+|..-...|.
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444567788888899999988888885
No 60
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=33.01 E-value=70 Score=28.17 Aligned_cols=12 Identities=50% Similarity=1.129 Sum_probs=8.5
Q ss_pred hcCcccccchhh
Q 019130 190 KKMALCEICGSF 201 (345)
Q Consensus 190 qkm~VCeVCGA~ 201 (345)
...-||.|||-.
T Consensus 169 ~~~~~C~~CG~i 180 (202)
T 1yuz_A 169 DKFHLCPICGYI 180 (202)
T ss_dssp CCEEECSSSCCE
T ss_pred CcEEEECCCCCE
Confidence 346789999843
No 61
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=32.99 E-value=1.6e+02 Score=29.48 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=15.4
Q ss_pred CCCCCcc-hhhcCCChhHhhhhcccCCCC-CC
Q 019130 32 DDKEVCP-FYMVRFCPHDLFVNTRSDLGP-CP 61 (345)
Q Consensus 32 ~D~~VCk-~yL~g~CPhdLF~nTK~DlG~-C~ 61 (345)
.-..+|| -.=.|+|+. -|+|+ ||
T Consensus 23 r~~s~Ck~~~D~pgCaD-------eDwGvkCP 47 (491)
T 1m1j_A 23 MHESSCKYEKNWPICVD-------DDWGTKCP 47 (491)
T ss_dssp ----CCSSTTCCCBCCT-------TSTTTEEC
T ss_pred cccccccccCCCCCCcc-------ccccCCCC
Confidence 4678999 788999944 48885 88
No 62
>2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A*
Probab=32.96 E-value=1e+02 Score=24.19 Aligned_cols=37 Identities=5% Similarity=-0.115 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 019130 134 LEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVE 170 (345)
Q Consensus 134 l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~e 170 (345)
+..++..+..+|..++..|+++++..++.++..++.+
T Consensus 103 ~~r~l~~~~~~i~~~~~~~d~~~~l~~~~el~~l~~~ 139 (143)
T 2r6a_C 103 KWLMLKVKEQEKTEAERRKDFLTAARIAKEMIEMKKM 139 (143)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 3455667777888888899999998888887777654
No 63
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=32.88 E-value=1.4e+02 Score=21.58 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 019130 132 SVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLT 175 (345)
Q Consensus 132 ~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~le 175 (345)
+-|.++|..+-.-|.++-..|..|+..-|-.-+.+|+.+...++
T Consensus 12 dpL~EQi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~ei~~~~ 55 (59)
T 1z0j_B 12 ELLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLAKQK 55 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 35677777777888888999999987777766666666554443
No 64
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4
Probab=32.63 E-value=12 Score=31.07 Aligned_cols=30 Identities=17% Similarity=0.493 Sum_probs=25.2
Q ss_pred hcCcccccchhhhcccchHHHhhhhhccccccc
Q 019130 190 KKMALCEICGSFLVANDAAERTQSHISGKQHIG 222 (345)
Q Consensus 190 qkm~VCeVCGA~Ls~~D~d~Rl~dH~~GK~HlG 222 (345)
.+...|.+||.+.+ +..=|..|+.+|.|..
T Consensus 48 ekpfyC~~C~K~F~---~~~~L~~H~rsK~HKr 77 (124)
T 1zr9_A 48 GGLHRCLACARYFI---DSTNLKTHFRSKDHKK 77 (124)
T ss_dssp GGCSEETTTTEECS---SHHHHHHHTTCHHHHH
T ss_pred CcceEcccCcchhC---CHHHHHHHHhhhhhhH
Confidence 45699999999877 5667899999999954
No 65
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=32.30 E-value=14 Score=25.17 Aligned_cols=28 Identities=25% Similarity=0.565 Sum_probs=19.4
Q ss_pred hcCcccccchhhhcccchHHHhhhhhcc
Q 019130 190 KKMALCEICGSFLVANDAAERTQSHISG 217 (345)
Q Consensus 190 qkm~VCeVCGA~Ls~~D~d~Rl~dH~~G 217 (345)
-.-.||.-||-.++..---.-|+.|-.|
T Consensus 15 ~~YRvC~~CgkPi~lsAIvdHLenhC~~ 42 (44)
T 2lo3_A 15 IQYRVCEKCGKPLALTAIVDHLENHCAG 42 (44)
T ss_dssp CCEEECTTTCCEEETTTHHHHHHHCCTT
T ss_pred ccchhhcccCCcchHHHHHHHHHHHhcc
Confidence 3568999999998876554555555443
No 66
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=32.18 E-value=1.7e+02 Score=32.26 Aligned_cols=52 Identities=15% Similarity=0.175 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019130 126 EKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178 (345)
Q Consensus 126 e~~e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~le~~~ 178 (345)
...++|..++++|..+.++.+.|-+.-+--. ..+-.+|..|+.+...|+++.
T Consensus 988 ~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~-~~L~~kv~~L~~e~~~L~qq~ 1039 (1080)
T 2dfs_A 988 SLQEEIAKLRKELHQTQTEKKTIEEWADKYK-HETEQLVSELKEQNTLLKTEK 1039 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666655555533211111 244456666666666666654
No 67
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.04 E-value=15 Score=21.45 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=14.6
Q ss_pred hcCcccccchhhhcccchHHHhhhhh
Q 019130 190 KKMALCEICGSFLVANDAAERTQSHI 215 (345)
Q Consensus 190 qkm~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (345)
.+..+|++||.-... ..-|..|.
T Consensus 7 ~~~~~C~~C~k~f~~---~~~l~~H~ 29 (36)
T 2elr_A 7 GKTHLCDMCGKKFKS---KGTLKSHK 29 (36)
T ss_dssp CSSCBCTTTCCBCSS---HHHHHHHH
T ss_pred CCCeecCcCCCCcCc---hHHHHHHH
Confidence 456899999976552 33445554
No 68
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=31.77 E-value=1.8e+02 Score=24.65 Aligned_cols=42 Identities=14% Similarity=0.102 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Q 019130 131 LSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKT 172 (345)
Q Consensus 131 i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~ 172 (345)
..++...|..++++++.+-..+++++|..++.++.=+..-..
T Consensus 122 ~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~f~~kl~~ 163 (174)
T 3hho_A 122 DTKVTAMQRHYLAQLQGQLAQSEWLAAADQIRKLKFIAKLKN 163 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888889999999999887776655443333
No 69
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1
Probab=31.44 E-value=1.6e+02 Score=22.01 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019130 128 SEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178 (345)
Q Consensus 128 ~e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~le~~~ 178 (345)
...|....++|..+...+++|.+.|-.+ |..+...++.|......|....
T Consensus 49 e~~~~~~~~~i~~l~~~a~~L~~~~h~~-~~~I~~r~~~l~~~w~~L~~~~ 98 (107)
T 2spc_A 49 DKAINGHEQKIAALQTVADQLIAQNHYA-SNLVDEKRKQVLERWRHLKEGL 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788888889999999998887654 6678888888887777776543
No 70
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=30.84 E-value=98 Score=25.78 Aligned_cols=20 Identities=0% Similarity=0.258 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 019130 91 QFCEKLVMDLDRRVRRGRER 110 (345)
Q Consensus 91 ~~L~~li~d~drkI~~~k~R 110 (345)
.+|..+...+|.+|..-...
T Consensus 28 e~L~~vA~~vd~km~ei~~~ 47 (138)
T 3hnw_A 28 EYLQRVASYINNKITEFNKE 47 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 56777777888888777543
No 71
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=30.79 E-value=1.8e+02 Score=24.99 Aligned_cols=43 Identities=12% Similarity=0.026 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Q 019130 131 LSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTT 173 (345)
Q Consensus 131 i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~ 173 (345)
..++.+.|..++++++.+-..++.++|..++.++.=+..-...
T Consensus 127 ~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~y~~kl~~~ 169 (181)
T 3uo3_A 127 EKQNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAKA 169 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888889999999999988877776655543333
No 72
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=30.67 E-value=90 Score=22.67 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 019130 133 VLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVE 170 (345)
Q Consensus 133 ~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~e 170 (345)
++...|..|-++..++.++-+.++|..+-.++..|+.+
T Consensus 21 ~~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 21 ALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 45666888889999999999999999988888888754
No 73
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=29.93 E-value=1.2e+02 Score=26.21 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=7.4
Q ss_pred cCcccccchhh
Q 019130 191 KMALCEICGSF 201 (345)
Q Consensus 191 km~VCeVCGA~ 201 (345)
..-+|.|||-.
T Consensus 154 ~~~~C~~CG~~ 164 (191)
T 1lko_A 154 TKWRCRNCGYV 164 (191)
T ss_dssp EEEEETTTCCE
T ss_pred ceEEECCCCCE
Confidence 35778888843
No 74
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=29.85 E-value=16 Score=24.31 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=19.0
Q ss_pred cCcccccchhhhcccchHHHhhhhhc
Q 019130 191 KMALCEICGSFLVANDAAERTQSHIS 216 (345)
Q Consensus 191 km~VCeVCGA~Ls~~D~d~Rl~dH~~ 216 (345)
...+|+-||..+.+.+.++-.+=||.
T Consensus 8 ~~~~C~~C~~~i~~~~~~EH~D~H~A 33 (39)
T 2i5o_A 8 DQVPCEKCGSLVPVWDMPEHMDYHFA 33 (39)
T ss_dssp CEEECTTTCCEEEGGGHHHHHHHHHH
T ss_pred CCcccccccCcCCcccccchhhHHHH
Confidence 45789999999887766655555553
No 75
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=29.31 E-value=14 Score=20.06 Aligned_cols=12 Identities=25% Similarity=0.587 Sum_probs=8.7
Q ss_pred Ccccccchhhhc
Q 019130 192 MALCEICGSFLV 203 (345)
Q Consensus 192 m~VCeVCGA~Ls 203 (345)
..+|++||....
T Consensus 2 ~~~C~~C~k~f~ 13 (29)
T 2m0f_A 2 PLKCRECGKQFT 13 (29)
T ss_dssp CEECTTTSCEES
T ss_pred CccCCCCCCccC
Confidence 357999997544
No 76
>3u8p_A Cytochrome B562 integral fusion with enhanced GRE fluorescent protein; directed evolution, domain insertion, energy transfer, fluor quenching; HET: CRO HEM; 2.75A {Aequorea victoria}
Probab=29.15 E-value=1.8e+02 Score=27.94 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=20.5
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 019130 143 EQVETLGEAGKVDEAEALMRKVEILNV 169 (345)
Q Consensus 143 ~eaE~LGeeG~VdeA~~l~~~ve~Lk~ 169 (345)
.+|-.|..+|+++||++.......++.
T Consensus 116 D~a~~la~~g~l~eAkk~a~~~~~~r~ 142 (347)
T 3u8p_A 116 DDALKLANEGKVKEAQAAAEQLKTTRN 142 (347)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTHHHHHH
T ss_pred hHHHHhhhccchHHHHHHHHHhHhHHH
Confidence 566779999999999987655555443
No 77
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.80 E-value=21 Score=21.84 Aligned_cols=23 Identities=22% Similarity=0.350 Sum_probs=15.4
Q ss_pred hcCcccccchhhhcccchHHHhhhhh
Q 019130 190 KKMALCEICGSFLVANDAAERTQSHI 215 (345)
Q Consensus 190 qkm~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (345)
.+..+|++||.-... ..-|..|.
T Consensus 10 ~k~~~C~~C~k~f~~---~~~L~~H~ 32 (44)
T 2en7_A 10 MKPYVCNECGKAFRS---KSYLIIHT 32 (44)
T ss_dssp SSSSCCTTTCCCCSS---HHHHHHHH
T ss_pred CcCeECCCCCCccCC---HHHHHHHh
Confidence 456899999986553 34455565
No 78
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.71 E-value=16 Score=21.49 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=15.3
Q ss_pred hcCcccccchhhhcccchHHHhhhhh
Q 019130 190 KKMALCEICGSFLVANDAAERTQSHI 215 (345)
Q Consensus 190 qkm~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (345)
.+..+|++||..... ..-|..|.
T Consensus 7 ~k~~~C~~C~k~f~~---~~~l~~H~ 29 (36)
T 2elq_A 7 GKPFKCSLCEYATRS---KSNLKAHM 29 (36)
T ss_dssp CCSEECSSSSCEESC---HHHHHHHH
T ss_pred CCCccCCCCCchhCC---HHHHHHHH
Confidence 456899999987653 33455554
No 79
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=28.71 E-value=2.2e+02 Score=24.18 Aligned_cols=84 Identities=10% Similarity=0.138 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhcCccc---ccchhh
Q 019130 125 AEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALC---EICGSF 201 (345)
Q Consensus 125 ~e~~e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~le~~~~~~~~~~~~~~qkm~VC---eVCGA~ 201 (345)
.....+|..+...+..++..+-.+-..++.+.|..+...=+.+.....++.... ...-..+.-+| ..+-++
T Consensus 14 ~~~~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~i~~~~------~~~l~~~~~~~~d~~~~~~~ 87 (227)
T 1t72_A 14 EETKEQVIKMAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDIERRC------IRMIALYQPEAGDLRMIMGI 87 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHH------HHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHhcCCChHHHHHHHHH
Q ss_pred hcccchHHHhhhh
Q 019130 202 LVANDAAERTQSH 214 (345)
Q Consensus 202 Ls~~D~d~Rl~dH 214 (345)
|.+..+-+|+.||
T Consensus 88 l~i~~~lERIgD~ 100 (227)
T 1t72_A 88 YKIVSDLERMGDE 100 (227)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
No 80
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=28.69 E-value=1.3e+02 Score=23.56 Aligned_cols=44 Identities=14% Similarity=0.351 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 019130 88 ELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQV 145 (345)
Q Consensus 88 e~~~~L~~li~d~drkI~~~k~RL~~~~e~~~~~~~~~e~~e~i~~l~ekI~~ll~ea 145 (345)
+...+-..+|.++-++|.+- +++ . . . .-+|.+|+.+|+.|+.+-
T Consensus 25 ~AekWR~qvikEIs~Kv~~I-----qn~--~----L-~--E~~IRdLNDEINkL~rEK 68 (92)
T 1x4t_A 25 KAEKWRRQIIGEISKKVAQI-----QNA--G----L-G--EFRIRDLNDEINKLLREK 68 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHC--C----S-C--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-----hCC--C----C-C--HHHHHHHHHHHHHHHHHH
Confidence 44455567777777777654 332 1 1 1 357889999999888763
No 81
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=28.57 E-value=12 Score=27.20 Aligned_cols=14 Identities=21% Similarity=0.752 Sum_probs=9.8
Q ss_pred hcCcccccchhhhc
Q 019130 190 KKMALCEICGSFLV 203 (345)
Q Consensus 190 qkm~VCeVCGA~Ls 203 (345)
.+|.+|..||+|-.
T Consensus 3 s~mr~C~~Cg~YTL 16 (60)
T 2aus_D 3 FRIRKCPKCGRYTL 16 (60)
T ss_dssp -CCEECTTTCCEES
T ss_pred ccceECCCCCCEEc
Confidence 46788888887744
No 82
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=28.55 E-value=1.6e+02 Score=25.51 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHH--HHHHHHHHHHHHHHHHHHHhhh
Q 019130 130 QLSVLEEKIKNLLEQVETLGEAGKVDE--AEALMRKVEILNVEKTTLTQQS 178 (345)
Q Consensus 130 ~i~~l~ekI~~ll~eaE~LGeeG~Vde--A~~l~~~ve~Lk~ek~~le~~~ 178 (345)
++..|..+|..+-.++..|....++|+ +.++..++..|+.+......++
T Consensus 86 ~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~ 136 (175)
T 3lay_A 86 QTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKR 136 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777788888888887776664 4667777777776665544433
No 83
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=28.53 E-value=26 Score=20.52 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=14.9
Q ss_pred hcCcccccchhhhcccchHHHhhhhh
Q 019130 190 KKMALCEICGSFLVANDAAERTQSHI 215 (345)
Q Consensus 190 qkm~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (345)
.+...|++||.-.+. ..-|..|.
T Consensus 9 ~k~~~C~~C~k~f~~---~~~l~~H~ 31 (37)
T 1p7a_A 9 IKPFQCPDCDRSFSR---SDHLALHR 31 (37)
T ss_dssp SSSBCCTTTCCCBSS---HHHHHHHH
T ss_pred CCCccCCCCCcccCc---HHHHHHHH
Confidence 456899999976552 33455554
No 84
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=28.40 E-value=22 Score=32.45 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=17.4
Q ss_pred CCcchhhcCCChhHhhhhcccCCCCCCCCCcH
Q 019130 35 EVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQ 66 (345)
Q Consensus 35 ~VCk~yL~g~CPhdLF~nTK~DlG~C~kiHd~ 66 (345)
=.||+||.|.|++-.. .-..|...||-
T Consensus 90 HLCK~~l~G~C~~~~~-----~~~~Ck~SHdi 116 (229)
T 3u9g_A 90 HLCKLNLLGRCHYAQS-----QRNLCKYSHDV 116 (229)
T ss_dssp CCCHHHHTTCCGGGTC-----CSSCCSSCSCT
T ss_pred eechhhhcCcCCcccC-----CCCCccccccc
Confidence 4688888888854321 12568877764
No 85
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.31 E-value=13 Score=27.82 Aligned_cols=23 Identities=30% Similarity=0.749 Sum_probs=20.1
Q ss_pred CCcchhhcCCChhHhhhhcccCCCCCCCCCcH
Q 019130 35 EVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQ 66 (345)
Q Consensus 35 ~VCk~yL~g~CPhdLF~nTK~DlG~C~kiHd~ 66 (345)
.+|++|+.|.|||. ..|..-|.+
T Consensus 21 ~LC~~~~~G~C~~G---------~~C~FAHG~ 43 (69)
T 2d9m_A 21 SICDRYMNGTCPEG---------NSCKFAHGN 43 (69)
T ss_dssp SBCHHHHHSCCSSC---------SSCSSBSSH
T ss_pred ccCcccCcCCCCCC---------CccCCcCCH
Confidence 89999999999873 479999986
No 86
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=28.29 E-value=3.2e+02 Score=24.36 Aligned_cols=65 Identities=14% Similarity=0.210 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Q 019130 95 KLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTL 174 (345)
Q Consensus 95 ~li~d~drkI~~~k~RL~~~~e~~~~~~~~~e~~e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~l 174 (345)
..+++|.+.|+++...|. .+|..|+.+=..+..+|-.+...|+++.|--+...+=..+.+...|
T Consensus 10 e~~r~~~r~Lr~~~R~Ld----------------R~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl 73 (218)
T 3frt_A 10 ELVNEWSLKIRKEMRVVD----------------RQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKL 73 (218)
T ss_dssp HHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777766666664 3344445555566677888888999998887777776666665555
Q ss_pred H
Q 019130 175 T 175 (345)
Q Consensus 175 e 175 (345)
-
T Consensus 74 ~ 74 (218)
T 3frt_A 74 Y 74 (218)
T ss_dssp H
T ss_pred H
Confidence 4
No 87
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.18 E-value=26 Score=21.84 Aligned_cols=28 Identities=25% Similarity=0.494 Sum_probs=17.6
Q ss_pred hcCcccccchhhhcccchHHHhhhhhccccccc
Q 019130 190 KKMALCEICGSFLVANDAAERTQSHISGKQHIG 222 (345)
Q Consensus 190 qkm~VCeVCGA~Ls~~D~d~Rl~dH~~GK~HlG 222 (345)
.+...|++||.-... ..-|..|+ +.|.|
T Consensus 10 ~k~~~C~~C~k~f~~---~~~L~~H~--~~H~~ 37 (46)
T 2eq2_A 10 GKPYQCNECGKAFSQ---TSKLARHQ--RVHTG 37 (46)
T ss_dssp SCSSSCCSSCCCCSS---HHHHHHHG--GGGCC
T ss_pred CCCeECCCCCcccCC---HHHHHHHH--HHcCC
Confidence 456899999986553 34455665 34544
No 88
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=28.16 E-value=22 Score=35.05 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 019130 130 QLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQ 177 (345)
Q Consensus 130 ~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~le~~ 177 (345)
++..|..+.+.+.++|-+|...|+ ++..+++++..|+.+.+.|+++
T Consensus 45 ~~~~l~~~~n~~sk~i~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~ 90 (425)
T 2dq3_A 45 RLEALRSERNKLSKEIGKLKREGK--DTTEIQNRVKELKEEIDRLEEE 90 (425)
T ss_dssp HHHHHHHHHHHHHHHTTGGGSSCS--CTTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCc--cHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555544442 3344444555555544444443
No 89
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=28.03 E-value=2.4e+02 Score=23.63 Aligned_cols=13 Identities=31% Similarity=0.733 Sum_probs=10.5
Q ss_pred cCcccccchhhhc
Q 019130 191 KMALCEICGSFLV 203 (345)
Q Consensus 191 km~VCeVCGA~Ls 203 (345)
..-+|++||..+.
T Consensus 110 ~yg~C~~Cg~~Ip 122 (151)
T 1tjl_A 110 DFGYCESCGVEIG 122 (151)
T ss_dssp CCSBCSSSSCBCC
T ss_pred CCceeCCCCCcch
Confidence 4579999998765
No 90
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=27.80 E-value=18 Score=20.84 Aligned_cols=20 Identities=20% Similarity=0.479 Sum_probs=12.6
Q ss_pred cccccchhhhcccchHHHhhhhh
Q 019130 193 ALCEICGSFLVANDAAERTQSHI 215 (345)
Q Consensus 193 ~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (345)
..|++||.-.+ ...-|..|.
T Consensus 3 ~~C~~C~k~f~---~~~~L~~H~ 22 (32)
T 2kfq_A 3 FACPACPKRFM---RSDALSKHI 22 (32)
T ss_dssp SSSSSSCTTHH---HHHTTSSST
T ss_pred CCCCCCCcccC---CHHHHHHHH
Confidence 57999997655 223355554
No 91
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=27.62 E-value=12 Score=29.03 Aligned_cols=14 Identities=57% Similarity=0.942 Sum_probs=10.1
Q ss_pred hcCcccccchhhhc
Q 019130 190 KKMALCEICGSFLV 203 (345)
Q Consensus 190 qkm~VCeVCGA~Ls 203 (345)
-.|..|+|||+-|-
T Consensus 6 ~~~~~~PlCG~~L~ 19 (95)
T 2k5c_A 6 HHMAKCPICGSPLK 19 (95)
T ss_dssp --CEECSSSCCEEC
T ss_pred cccccCCcCCCccC
Confidence 46889999998653
No 92
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=27.31 E-value=1.5e+02 Score=22.66 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 019130 133 VLEEKIKNLLEQVETL 148 (345)
Q Consensus 133 ~l~ekI~~ll~eaE~L 148 (345)
+-.++|..|..+++.|
T Consensus 30 ~RgekL~~L~~kt~~L 45 (91)
T 3hd7_A 30 ERDQKLSELDDRADAL 45 (91)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HccchHHHHHHHHHHH
Confidence 3333444444444433
No 93
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=27.08 E-value=19 Score=21.69 Aligned_cols=22 Identities=14% Similarity=0.385 Sum_probs=14.0
Q ss_pred cCcccccchhhhcccchHHHhhhhh
Q 019130 191 KMALCEICGSFLVANDAAERTQSHI 215 (345)
Q Consensus 191 km~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (345)
+..+|++||.-.... .-|..|.
T Consensus 5 k~~~C~~C~k~f~~~---~~L~~H~ 26 (39)
T 1njq_A 5 RSYTCSFCKREFRSA---QALGGHM 26 (39)
T ss_dssp SSEECTTTCCEESSH---HHHHHHH
T ss_pred CceECCCCCcccCCH---HHHHHHH
Confidence 457899999876533 3344453
No 94
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=26.81 E-value=21 Score=19.36 Aligned_cols=21 Identities=19% Similarity=0.513 Sum_probs=13.5
Q ss_pred CcccccchhhhcccchHHHhhhhh
Q 019130 192 MALCEICGSFLVANDAAERTQSHI 215 (345)
Q Consensus 192 m~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (345)
...|++||.-.+ ...-|..|.
T Consensus 3 ~~~C~~C~k~f~---~~~~l~~H~ 23 (28)
T 2kvf_A 3 PYSCSVCGKRFS---LKHQMETHY 23 (28)
T ss_dssp SEECSSSCCEES---CHHHHHHHH
T ss_pred CccCCCCCcccC---CHHHHHHHH
Confidence 357999997655 334455564
No 95
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=26.80 E-value=94 Score=30.41 Aligned_cols=45 Identities=20% Similarity=0.286 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019130 130 QLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178 (345)
Q Consensus 130 ~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~le~~~ 178 (345)
++..|..+.+.+.++|-+ ..-+++..+++++..|+.+.+.|++++
T Consensus 43 ~~~~l~~~~n~~sk~i~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~ 87 (421)
T 1ses_A 43 RLQEVQTERNQVAKRVPK----APPEEKEALIARGKALGEEAKRLEEAL 87 (421)
T ss_dssp HHHHHHHHHHHHHHHSSS----SCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh----hccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444433 333567778888888888887777654
No 96
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=26.64 E-value=1.8e+02 Score=23.17 Aligned_cols=42 Identities=19% Similarity=0.254 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 019130 94 EKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETL 148 (345)
Q Consensus 94 ~~li~d~drkI~~~k~RL~~~~e~~~~~~~~~e~~e~i~~l~ekI~~ll~eaE~L 148 (345)
...+..+++||......++.- .+.+..+..+|..+...++++
T Consensus 87 ~eA~~~l~~r~~~l~~~~~~l-------------~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 87 EDAMESIKSQKNELESTLQKM-------------GENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
Confidence 345566667776666666432 234445555555555555544
No 97
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=26.40 E-value=3.7e+02 Score=24.44 Aligned_cols=87 Identities=13% Similarity=0.066 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh--cCCCCCCCC-C------chhhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Q 019130 90 AQFCEKLVMDLDRRVRRGRERLSQ--EVEPAPPPP-I------SAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEAL 160 (345)
Q Consensus 90 ~~~L~~li~d~drkI~~~k~RL~~--~~e~~~~~~-~------~~e~~e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l 160 (345)
+..|..|+.+|+.-+.=..++... ..+-..... . -.....+|...+..|+.+.+.++.|.++|-.. |..+
T Consensus 7 l~~L~qF~~d~~~e~~Wi~Eke~~~~~~D~~~~~~~l~~~~~kh~~le~El~a~e~~v~~v~~~g~~L~~~~hp~-~~~I 85 (283)
T 3pe0_A 7 LESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPA-RPTV 85 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTT-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCC-hHHH
Confidence 345667777777766555554432 221111111 1 11234567778888999999999999998643 5566
Q ss_pred HHHHHHHHHHHHHHHhh
Q 019130 161 MRKVEILNVEKTTLTQQ 177 (345)
Q Consensus 161 ~~~ve~Lk~ek~~le~~ 177 (345)
.+.++.|+.....|.+.
T Consensus 86 ~~r~~~L~~~W~~L~~l 102 (283)
T 3pe0_A 86 ESFQAALQTQWSWMLQL 102 (283)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66777777666666543
No 98
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.97 E-value=17 Score=21.24 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=14.9
Q ss_pred hcCcccccchhhhcccchHHHhhhhh
Q 019130 190 KKMALCEICGSFLVANDAAERTQSHI 215 (345)
Q Consensus 190 qkm~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (345)
.+..+|++||.... ...-|..|.
T Consensus 7 ~k~~~C~~C~k~f~---~~~~l~~H~ 29 (36)
T 2els_A 7 GKIFTCEYCNKVFK---FKHSLQAHL 29 (36)
T ss_dssp CCCEECTTTCCEES---SHHHHHHHH
T ss_pred CCCEECCCCCceeC---CHHHHHHHH
Confidence 45689999998655 233455554
No 99
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=25.93 E-value=1.3e+02 Score=30.30 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=11.1
Q ss_pred HHHHH----HHH-HHHHHHHHHHHHhhh
Q 019130 156 EAEAL----MRK-VEILNVEKTTLTQQS 178 (345)
Q Consensus 156 eA~~l----~~~-ve~Lk~ek~~le~~~ 178 (345)
++..+ +++ +..|+.+.+.|++++
T Consensus 100 ~~~~l~~~~~~~~~~~l~~~i~~le~~~ 127 (484)
T 3lss_A 100 QVEQLCVLQLKQLSKDLSDQVAGLAKEA 127 (484)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555 566 666666666665543
No 100
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=25.89 E-value=2.8e+02 Score=22.92 Aligned_cols=76 Identities=12% Similarity=0.102 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHH-----HHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 019130 89 LAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLE-----EKIKNLLEQVETLGEAGKVDEAEALMRK 163 (345)
Q Consensus 89 ~~~~L~~li~d~drkI~~~k~RL~~~~e~~~~~~~~~e~~e~i~~l~-----ekI~~ll~eaE~LGeeG~VdeA~~l~~~ 163 (345)
+..+|..|+.++...|..-..-|+..+ .. .......+-.|+-.. ..+..+..++|.++..|+++++..++.+
T Consensus 42 ~~ell~~Fl~d~~~~l~~L~~al~~~~--~D-~~~l~~~aH~LKGss~~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~ 118 (153)
T 3us6_A 42 VFEVVSLFFDDSERILKDLSFAVDQQS--ID-FKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQ 118 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSS--CC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC--cc-HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 446678999999999988777775321 01 001111222232222 3445888999999999999987776555
Q ss_pred HHHH
Q 019130 164 VEIL 167 (345)
Q Consensus 164 ve~L 167 (345)
++.-
T Consensus 119 l~~e 122 (153)
T 3us6_A 119 VKQE 122 (153)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 101
>2vqe_T 30S ribosomal protein S20; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.7.6.1 PDB: 1gix_W* 1hnw_T* 1hnx_T* 1hnz_T* 1hr0_T 1j5e_T 1jgo_W* 1jgp_W* 1jgq_W* 1ml5_W* 1yl4_W 2b64_T* 2b9m_T* 2b9o_T* 2f4v_T* 2ow8_u* 2qnh_u* 2uxb_T* 1fjg_T* 2uxd_T* ...
Probab=25.51 E-value=1.2e+02 Score=24.33 Aligned_cols=36 Identities=36% Similarity=0.457 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 019130 133 VLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILN 168 (345)
Q Consensus 133 ~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk 168 (345)
.+-..|...+.+++++.+.|+.+.|+.++..+...-
T Consensus 28 a~kS~~rT~iKkv~~Ai~~gdk~~A~~~l~~a~s~i 63 (106)
T 2vqe_T 28 AKKSAIKTLSKKAVQLAQEGKAEEALKIMRKAESLI 63 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 445567788899999999999999999998887764
No 102
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=31.06 E-value=15 Score=20.21 Aligned_cols=11 Identities=27% Similarity=0.875 Sum_probs=8.5
Q ss_pred cccccchhhhc
Q 019130 193 ALCEICGSFLV 203 (345)
Q Consensus 193 ~VCeVCGA~Ls 203 (345)
.+|++||.-..
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2lvt_A 3 CQCVMCGKAFT 13 (29)
Confidence 57999997654
No 103
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=24.92 E-value=27 Score=18.83 Aligned_cols=12 Identities=25% Similarity=0.730 Sum_probs=9.2
Q ss_pred Ccccccchhhhc
Q 019130 192 MALCEICGSFLV 203 (345)
Q Consensus 192 m~VCeVCGA~Ls 203 (345)
..+|++||.-..
T Consensus 2 ~~~C~~C~~~f~ 13 (29)
T 1ard_A 2 SFVCEVCTRAFA 13 (29)
T ss_dssp CCBCTTTCCBCS
T ss_pred CeECCCCCcccC
Confidence 368999997655
No 104
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=24.90 E-value=1.8e+02 Score=22.52 Aligned_cols=13 Identities=15% Similarity=0.087 Sum_probs=5.2
Q ss_pred HHHHHHHHHhhcC
Q 019130 140 NLLEQVETLGEAG 152 (345)
Q Consensus 140 ~ll~eaE~LGeeG 152 (345)
.|.+-|+.+.+.|
T Consensus 45 IM~~NI~kvLeRG 57 (96)
T 1sfc_A 45 IMRVNVDKVLERD 57 (96)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 3334444444433
No 105
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=24.72 E-value=14 Score=29.30 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=16.5
Q ss_pred hcCcccccchhhhcccchHHHhhhhh
Q 019130 190 KKMALCEICGSFLVANDAAERTQSHI 215 (345)
Q Consensus 190 qkm~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (345)
-.-+||.-||..+++.- |.|||
T Consensus 73 ~~YRvCn~CGkPI~l~A----IvDHL 94 (96)
T 3mhs_E 73 IQYRVCEKCGKPLALTA----IVDHL 94 (96)
T ss_dssp CCCEEETTTCCEECGGG----TTTCC
T ss_pred ccchhhhccCCceeHHH----HHHHh
Confidence 45599999999988653 55665
No 106
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=24.57 E-value=3.8e+02 Score=23.94 Aligned_cols=54 Identities=22% Similarity=0.342 Sum_probs=45.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019130 124 SAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178 (345)
Q Consensus 124 ~~e~~e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~le~~~ 178 (345)
..++...|..+++.|..|...+++|- +|+..+|..+...+..|......|...+
T Consensus 167 ~e~ie~dL~~~e~~i~~l~~~a~~L~-~~~y~~a~~i~~r~~~l~~~w~~L~~~~ 220 (235)
T 2odv_A 167 AGEVERDLDKADSMIRLLFNDVQTLK-DGRHPQGEQMYRRVYRLHKRLVAIRTEY 220 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667789999999999999999886 4667778889999999999888887765
No 107
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=24.41 E-value=1.2e+02 Score=33.45 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHhh
Q 019130 162 RKVEILNVEKTTLTQQ 177 (345)
Q Consensus 162 ~~ve~Lk~ek~~le~~ 177 (345)
.++..|.++.++++.+
T Consensus 984 ~~v~~L~~e~~~l~~~ 999 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKE 999 (1080)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 108
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=24.30 E-value=1.9e+02 Score=20.32 Aligned_cols=14 Identities=14% Similarity=0.496 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 019130 135 EEKIKNLLEQVETL 148 (345)
Q Consensus 135 ~ekI~~ll~eaE~L 148 (345)
.++|..|..+++.|
T Consensus 29 gekLd~L~~ks~~L 42 (61)
T 3b5n_A 29 GERLTSIEDKADNL 42 (61)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHH
Confidence 33333333333333
No 109
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.49 E-value=21 Score=20.70 Aligned_cols=14 Identities=21% Similarity=0.244 Sum_probs=10.6
Q ss_pred hcCcccccchhhhc
Q 019130 190 KKMALCEICGSFLV 203 (345)
Q Consensus 190 qkm~VCeVCGA~Ls 203 (345)
.+...|++||....
T Consensus 7 ~k~~~C~~C~k~f~ 20 (36)
T 2elt_A 7 GKPYKCPQCSYASA 20 (36)
T ss_dssp CCSEECSSSSCEES
T ss_pred CCCCCCCCCCcccC
Confidence 45689999997654
No 110
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=23.43 E-value=57 Score=26.29 Aligned_cols=67 Identities=19% Similarity=0.285 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC--CCCCCCC----chhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 019130 85 FEAELAQFCEKLVMDLDRRVRRGRERLSQEVE--PAPPPPI----SAEKSEQLSVLEEKIKNLLEQVETLGEA 151 (345)
Q Consensus 85 yE~e~~~~L~~li~d~drkI~~~k~RL~~~~e--~~~~~~~----~~e~~e~i~~l~ekI~~ll~eaE~LGee 151 (345)
|-..-+.-|+.=|...+..+-.|..+|..... +..+..+ ...-...+..|+.+|..|-..+-.+..+
T Consensus 32 ~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~va~ 104 (107)
T 2k48_A 32 FTMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLVAA 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555566667777788888864310 0111111 1122345666666666666555555443
No 111
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=23.33 E-value=3.2e+02 Score=23.95 Aligned_cols=41 Identities=17% Similarity=0.303 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Q 019130 134 LEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTL 174 (345)
Q Consensus 134 l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~l 174 (345)
+...|..+++++..+-..|++++|...+.++.=+..-.+++
T Consensus 160 ~~~~~~~~~~~l~~~~~~~d~~~A~~~v~kL~y~~kl~~~i 200 (207)
T 3bvo_A 160 VKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKI 200 (207)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555666667888888777776666554433333
No 112
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=23.11 E-value=32 Score=31.44 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=6.6
Q ss_pred CCCCcchhhcC
Q 019130 33 DKEVCPFYMVR 43 (345)
Q Consensus 33 D~~VCk~yL~g 43 (345)
=|+||++| -|
T Consensus 150 LPeiC~~Y-kG 159 (229)
T 3u9g_A 150 LPEICKSY-KG 159 (229)
T ss_dssp SCCBCTTC-CC
T ss_pred CchHHHHh-CC
Confidence 36777777 54
No 113
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=22.42 E-value=21 Score=24.54 Aligned_cols=10 Identities=30% Similarity=0.707 Sum_probs=7.9
Q ss_pred cccccchhhh
Q 019130 193 ALCEICGSFL 202 (345)
Q Consensus 193 ~VCeVCGA~L 202 (345)
-+|.||||--
T Consensus 31 w~CP~Cg~~k 40 (46)
T 6rxn_A 31 WCCPVCGVSK 40 (46)
T ss_dssp CBCTTTCCBG
T ss_pred CcCcCCCCcH
Confidence 4999999853
No 114
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=22.21 E-value=2.1e+02 Score=24.23 Aligned_cols=80 Identities=16% Similarity=0.203 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhhhc---CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcCCHHH---HHHHHHHHHHHHHHH
Q 019130 98 MDLDRRVRRGRERLSQE---VEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDE---AEALMRKVEILNVEK 171 (345)
Q Consensus 98 ~d~drkI~~~k~RL~~~---~e~~~~~~~~~e~~e~i~~l~ekI~~ll~eaE~LGeeG~Vde---A~~l~~~ve~Lk~ek 171 (345)
.++.++|..-+.||... +++..|+..+.+...++..+..++..|+.+|..=-..-.+++ -..++++.+.|+.+.
T Consensus 14 adl~kri~qL~~ri~~n~~vQEGe~P~edp~~Ll~El~~~~~~L~~Li~~IN~TN~~~~~~~~~tl~eaia~rd~L~~~~ 93 (154)
T 3kdq_A 14 VEAQRRYSELNQLLLDVAKVQEGDQPAENPHEILTELEELTTRINDLVRRINRTNSVTEFSEGMTLADALSVRDALLKKR 93 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTEEETTCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEETTEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHHHHHHHH
Confidence 34455555555555433 333333344566677788888888888888876332222111 134556667777666
Q ss_pred HHHHhh
Q 019130 172 TTLTQQ 177 (345)
Q Consensus 172 ~~le~~ 177 (345)
..+..-
T Consensus 94 ~~l~~~ 99 (154)
T 3kdq_A 94 TLYSDL 99 (154)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 115
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=22.18 E-value=2.3e+02 Score=23.62 Aligned_cols=49 Identities=10% Similarity=0.222 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019130 129 EQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178 (345)
Q Consensus 129 e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~le~~~ 178 (345)
..|....+.|..+...++.|.+.|..+ +..+...++.|....+.|....
T Consensus 154 ~~l~~~~~~i~~l~~~a~~L~~~~h~~-~~~I~~~~~~l~~rw~~l~~~~ 202 (214)
T 1s35_A 154 GSMENNRDKVLSPVDSGNKLVAEGNLY-SDKIKEKVQLIEDRHRKNNEKA 202 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCTT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888999999999999988775 5667778888887777776554
No 116
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=22.00 E-value=33 Score=18.48 Aligned_cols=20 Identities=20% Similarity=0.424 Sum_probs=12.7
Q ss_pred cccccchhhhcccchHHHhhhhh
Q 019130 193 ALCEICGSFLVANDAAERTQSHI 215 (345)
Q Consensus 193 ~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (345)
..|++||...... .-|..|.
T Consensus 3 ~~C~~C~k~f~~~---~~l~~H~ 22 (29)
T 1rik_A 3 FACPECPKRFMRS---DHLTLHI 22 (29)
T ss_dssp EECSSSSCEESCS---HHHHHHH
T ss_pred ccCCCCCchhCCH---HHHHHHH
Confidence 5799999765533 3355554
No 117
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=21.95 E-value=32 Score=24.06 Aligned_cols=29 Identities=21% Similarity=0.415 Sum_probs=19.5
Q ss_pred hhcCcccccchhhhcccchHHHhhhhhccccccc
Q 019130 189 EKKMALCEICGSFLVANDAAERTQSHISGKQHIG 222 (345)
Q Consensus 189 ~qkm~VCeVCGA~Ls~~D~d~Rl~dH~~GK~HlG 222 (345)
..+..+|++||.-.+ ...-|..|. ++|.|
T Consensus 29 ~ekp~~C~~C~k~F~---~~~~L~~H~--~~Htg 57 (60)
T 4gzn_C 29 GYRPRSCPECGKCFR---DQSEVNRHL--KVHQN 57 (60)
T ss_dssp TCCCEECTTTCCEES---SHHHHHHHG--GGGSC
T ss_pred CCcCeECCCCCCCcC---CHHHHHHHh--CccCC
Confidence 356789999998766 334566665 46655
No 118
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.73 E-value=24 Score=22.03 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=17.6
Q ss_pred hcCcccccchhhhcccchHHHhhhhhccccccc
Q 019130 190 KKMALCEICGSFLVANDAAERTQSHISGKQHIG 222 (345)
Q Consensus 190 qkm~VCeVCGA~Ls~~D~d~Rl~dH~~GK~HlG 222 (345)
.+..+|++||.-.+. ..-|..|. +.|.|
T Consensus 10 ~k~~~C~~C~k~f~~---~~~L~~H~--~~H~~ 37 (46)
T 2eoy_A 10 EKCFKCNKCEKTFSC---SKYLTQHE--RIHTR 37 (46)
T ss_dssp SCCEECSSSCCEESS---SHHHHHHH--TTCCS
T ss_pred CCCEECcCCCCcCCC---HHHHHHHH--HHcCC
Confidence 356789999986653 34455665 34544
No 119
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=21.69 E-value=20 Score=26.06 Aligned_cols=14 Identities=29% Similarity=0.800 Sum_probs=9.4
Q ss_pred hcCcccccchhhhc
Q 019130 190 KKMALCEICGSFLV 203 (345)
Q Consensus 190 qkm~VCeVCGA~Ls 203 (345)
.+|.+|..||+|-.
T Consensus 4 s~mr~C~~CgvYTL 17 (60)
T 2apo_B 4 MRMKKCPKCGLYTL 17 (60)
T ss_dssp CCCEECTTTCCEES
T ss_pred hhceeCCCCCCEec
Confidence 36777777777643
No 120
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=21.49 E-value=35 Score=19.75 Aligned_cols=20 Identities=20% Similarity=0.464 Sum_probs=13.1
Q ss_pred cccccchhhhcccchHHHhhhhh
Q 019130 193 ALCEICGSFLVANDAAERTQSHI 215 (345)
Q Consensus 193 ~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (345)
..|++||.-.+.. .-|..|.
T Consensus 3 ~~C~~C~k~F~~~---~~L~~H~ 22 (33)
T 1rim_A 3 FACPECPKRFMRS---DHLSKHI 22 (33)
T ss_dssp CCCSSSCCCCSSH---HHHHHHH
T ss_pred ccCCCCCchhCCH---HHHHHHH
Confidence 5799999866533 3455554
No 121
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.48 E-value=29 Score=21.62 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=15.6
Q ss_pred hcCcccccchhhhcccchHHHhhhhh
Q 019130 190 KKMALCEICGSFLVANDAAERTQSHI 215 (345)
Q Consensus 190 qkm~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (345)
.+..+|++||.-.. ...-|..|+
T Consensus 10 ~~~~~C~~C~k~f~---~~~~L~~H~ 32 (46)
T 2em5_A 10 TKSHQCHECGRGFT---LKSHLNQHQ 32 (46)
T ss_dssp SCSEECSSSCCEES---SHHHHHHHH
T ss_pred CCCeECCcCCCccC---CHHHHHHHH
Confidence 45688999998655 344466665
No 122
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.38 E-value=4.8e+02 Score=25.47 Aligned_cols=23 Identities=26% Similarity=0.622 Sum_probs=18.3
Q ss_pred CCCCCcchhhcCCChhHhhhhcccCCCC-CC
Q 019130 32 DDKEVCPFYMVRFCPHDLFVNTRSDLGP-CP 61 (345)
Q Consensus 32 ~D~~VCk~yL~g~CPhdLF~nTK~DlG~-C~ 61 (345)
....+||--=.++|- =-|+|. ||
T Consensus 26 ~~~s~Ck~~d~~~C~-------DeDwG~kCP 49 (390)
T 1deq_A 26 RQQSACKETGWPFCS-------DEDWNTKCP 49 (390)
T ss_pred hhccccCCCCCCCCc-------hhhccCCCC
Confidence 567899988899994 458886 88
No 123
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.10 E-value=34 Score=20.61 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=15.3
Q ss_pred hcCcccccchhhhcccchHHHhhhhh
Q 019130 190 KKMALCEICGSFLVANDAAERTQSHI 215 (345)
Q Consensus 190 qkm~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (345)
.+...|++||.-... ..-|..|.
T Consensus 9 ~k~~~C~~C~k~f~~---~~~L~~H~ 31 (42)
T 2ytb_A 9 EKPYRCDQCGKAFSQ---KGSLIVHI 31 (42)
T ss_dssp CCSBCCTTTTCCBSS---HHHHHTTG
T ss_pred CCCeeCCCccchhCC---HHHHHHHH
Confidence 456889999986553 34455564
No 124
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.82 E-value=35 Score=20.53 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=14.6
Q ss_pred hcCcccccchhhhcccchHHHhhhhh
Q 019130 190 KKMALCEICGSFLVANDAAERTQSHI 215 (345)
Q Consensus 190 qkm~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (345)
.+..+|++||.-.+.. .-|..|.
T Consensus 8 ~k~~~C~~C~k~f~~~---~~L~~H~ 30 (42)
T 2yte_A 8 EKPYSCAECKETFSDN---NRLVQHQ 30 (42)
T ss_dssp CCSCBCTTTCCBCSSH---HHHHHHH
T ss_pred CCCeECCCCCCccCCH---HHHHHHH
Confidence 4568999999865533 3344453
No 125
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=20.55 E-value=29 Score=22.63 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=14.9
Q ss_pred hcCcccccchhhhcccchHHHhhhhh
Q 019130 190 KKMALCEICGSFLVANDAAERTQSHI 215 (345)
Q Consensus 190 qkm~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (345)
.+..+|++||.-.... .-|..|+
T Consensus 22 ~k~~~C~~C~k~f~~~---~~L~~H~ 44 (54)
T 1yui_A 22 EQPATCPICYAVIRQS---RNLRRHL 44 (54)
T ss_dssp SCCEECTTTCCEESSH---HHHHHHH
T ss_pred CCCccCCCCCcccCCH---HHHHHHH
Confidence 4668999999865533 3344454
No 126
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=20.38 E-value=20 Score=21.85 Aligned_cols=10 Identities=50% Similarity=0.966 Sum_probs=8.0
Q ss_pred ccccchhhhc
Q 019130 194 LCEICGSFLV 203 (345)
Q Consensus 194 VCeVCGA~Ls 203 (345)
-|++|.+|.=
T Consensus 5 YCe~CE~FGH 14 (26)
T 2hqh_E 5 YCEICEMFGH 14 (26)
T ss_dssp EETTTTEESS
T ss_pred cchHHHHhCc
Confidence 5999999853
Done!