BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019132
(345 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CCB4|VPS53_MOUSE Vacuolar protein sorting-associated protein 53 homolog OS=Mus
musculus GN=Vps53 PE=2 SV=1
Length = 832
Score = 180 bits (457), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 158/264 (59%), Gaps = 7/264 (2%)
Query: 29 VICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLE 88
+IC I+++AEYC T+ L E + + +D L + ++++ D FS VI+ ++ LV L+
Sbjct: 551 LICSILSTAEYCLATTQQLEEKLKEKVDVSLTERINLTGEMDTFSTVISSSIQLLVQDLD 610
Query: 89 TKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI--YFQFFLDKL 146
D + M+++PW ++E VGDQS YV + + + ++P++ L+ YF F K
Sbjct: 611 AACDPALIAMSKMPWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCIKF 670
Query: 147 ASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNA--ASYTKFVS 204
A+S P+F ++FKCK IS GA+Q+LLDT ++K +LLD+PS+G Q ASYTK V
Sbjct: 671 ANSFIPKFITHLFKCKPISMVGAEQLLLDTHSLKMVLLDLPSIGSQVVRKAPASYTKIVV 730
Query: 205 REMSKAEALLKVILSPVDSV---ADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDF 261
+ M++AE +LKV+++P + + D Y LL + FQ+IL++KGLK+++Q ++L+
Sbjct: 731 KGMTRAEMILKVVMAPHEPLVVFVDNYIKLLTDCNSETFQKILDMKGLKRSEQSSMLELL 790
Query: 262 NKHGPGTTQPTIAPSVVPAAPPAP 285
+ P T S + P P
Sbjct: 791 RQRLPAPPSGTEGSSTLSLIAPTP 814
>sp|Q5ZLD7|VPS53_CHICK Vacuolar protein sorting-associated protein 53 homolog OS=Gallus
gallus GN=VPS53 PE=2 SV=1
Length = 831
Score = 176 bits (445), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 154/246 (62%), Gaps = 7/246 (2%)
Query: 29 VICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLE 88
+IC I+++AEYC T+ L E + + +D+ L + ++++ D FS VI+ ++ LV L+
Sbjct: 550 LICSILSTAEYCLATTQQLEEKLKEKVDASLVERINLTGETDTFSIVISNSIQLLVQDLD 609
Query: 89 TKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI--YFQFFLDKL 146
D + M+++ W ++E VGDQS YV + + + ++P++ L+ YF F K
Sbjct: 610 AACDPALTAMSKMQWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCIKF 669
Query: 147 ASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNA--ASYTKFVS 204
A+S P+F ++FKCK IS GA+Q+LLDT ++K +LLD+PS+G Q ASYT+ V
Sbjct: 670 ANSFIPKFINHLFKCKPISMVGAEQLLLDTHSLKMVLLDLPSIGSQVVRKAPASYTRIVV 729
Query: 205 REMSKAEALLKVILSPVDS---VADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDF 261
+ M++AE +LKV+++P + D Y LL + + FQ+IL++KGLK+++Q ++L+ F
Sbjct: 730 KGMTRAEMILKVVMAPHEPPVVFVDNYIKLLADCSTDTFQKILDMKGLKRSEQSSMLELF 789
Query: 262 NKHGPG 267
+ P
Sbjct: 790 RQRLPA 795
>sp|P34561|VPS53_CAEEL Vacuolar protein sorting-associated protein 53 homolog
OS=Caenorhabditis elegans GN=vps-53 PE=3 SV=3
Length = 798
Score = 144 bits (364), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 146/251 (58%), Gaps = 13/251 (5%)
Query: 29 VICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLE 88
++C I+ +A++C +TS L E +S+ I GVD+S+ + F ++ ++L LV +E
Sbjct: 491 LVCCILATADWCAETSIQLQEKLSQRIP-----GVDISQETEAFYSITNQSLQVLVQDVE 545
Query: 89 TKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSP--IYFQFFLDKL 146
+ D + +++V W +++ VGD+S ++ + L ++P++ +LS YF F KL
Sbjct: 546 STCDAALQSISKVNWTAVDCVGDESPFIGSMRAHLRQAVPLIRDMLSDRRKYFAHFCLKL 605
Query: 147 ASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNA--ASYTKFVS 204
A+ L +F ++F+C+ IS GA+Q+LL+T ++KT LL +PS+ ++ +Y V+
Sbjct: 606 ATQLAHKFVGSLFRCRTISTHGAEQLLLETHSLKTFLLSVPSIDSIINSKPPTAYVTSVN 665
Query: 205 REMSKAEALLKVI---LSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDF 261
++KAE +LKV+ L VD + Y LLP E Q++LE+KG+K+ + +L+ +
Sbjct: 666 AALTKAEMILKVVMCSLETVDEFVEQYIKLLPASDAAEMQKVLEMKGVKRQEHSAVLNAY 725
Query: 262 N-KHGPGTTQP 271
K G + P
Sbjct: 726 RLKIGASGSDP 736
>sp|Q5VIR6|VPS53_HUMAN Vacuolar protein sorting-associated protein 53 homolog OS=Homo
sapiens GN=VPS53 PE=1 SV=1
Length = 699
Score = 101 bits (251), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 87/146 (59%), Gaps = 2/146 (1%)
Query: 29 VICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLE 88
+IC I+++AEYC T+ L E + + +D L + ++++ D FS VI+ ++ LV L+
Sbjct: 551 LICNILSTAEYCLATTQQLEEKLKEKVDVSLIERINLTGEMDTFSTVISSSIQLLVQDLD 610
Query: 89 TKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI--YFQFFLDKL 146
D + M+++ W ++E VGDQS YV + + + ++P++ L+ YF F K
Sbjct: 611 AACDPALTAMSKMQWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCVKF 670
Query: 147 ASSLGPRFYANIFKCKHISETGAQQM 172
A+S P+F ++FKCK IS GA+Q+
Sbjct: 671 ANSFIPKFITHLFKCKPISMVGAEQV 696
>sp|Q5R5J4|VPS53_PONAB Vacuolar protein sorting-associated protein 53 homolog OS=Pongo
abelii GN=VPS53 PE=2 SV=1
Length = 699
Score = 101 bits (251), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 87/146 (59%), Gaps = 2/146 (1%)
Query: 29 VICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLE 88
+IC I+++AEYC T+ L E + + +D L + ++++ D FS VI+ ++ LV L+
Sbjct: 551 LICSILSTAEYCLATTQQLEEKLKEKVDVSLIERINLTGEMDTFSTVISSSIQLLVQDLD 610
Query: 89 TKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI--YFQFFLDKL 146
D + M+++ W ++E VGDQS YV + + + ++P++ L+ YF F K
Sbjct: 611 AACDPALTAMSKMQWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCIKF 670
Query: 147 ASSLGPRFYANIFKCKHISETGAQQM 172
A+S P+F ++FKCK IS GA+Q+
Sbjct: 671 ANSFIPKFITHLFKCKPISMVGAEQV 696
>sp|P87129|VPS53_SCHPO Vacuolar protein sorting-associated protein 53
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps53 PE=1 SV=1
Length = 756
Score = 98.6 bits (244), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 128/249 (51%), Gaps = 12/249 (4%)
Query: 30 ICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLET 89
I +N+AEY ++T+ +L + +I + + D + SEV + VI+ + TL+
Sbjct: 460 IAIRLNTAEYIYRTTIELEKRFQEISNKEFKDKMSFSEVLE----VISSSRGTLLKFATG 515
Query: 90 KFDN----EMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLS-PIYFQFFLD 144
KF+N ++ ++++ ++E+VGDQS YV G +T+ S++ ++ + F D
Sbjct: 516 KFENVLNSDLEPLSKMDLKNIETVGDQSSYVGGAVQNMTAKASEFLSVVDLNMFARNFCD 575
Query: 145 KLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVS 204
+ S +F I+ K ISE GA+Q+LLD + K LL +P L + S SY ++
Sbjct: 576 RSCESFTRQFLNAIYLAKPISEVGAEQLLLDLYSFKNALLKLPDLKQDYSITDSYINHLT 635
Query: 205 REMSKAEALLKVILSPVDSVA---DTYRALLPEGTPMEFQRILELKGLKKADQQTILDDF 261
M E +LK +L+P A +Y L+ + + F +LELKG+ K+D + L F
Sbjct: 636 IFMGYIETVLKTLLTPASPKAGFIQSYIFLVKDRSVTNFTVLLELKGVGKSDISSFLQQF 695
Query: 262 NKHGPGTTQ 270
+ T Q
Sbjct: 696 SDFVKKTPQ 704
>sp|A2BGR3|ERC6L_DANRE DNA excision repair protein ERCC-6-like OS=Danio rerio GN=ercc6l PE=1
SV=1
Length = 1451
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 184 LDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDSVADTY 228
L+ PS+ N + + E+SK E+LLK+ +P +SV D++
Sbjct: 1063 LEEPSINHDKQNNGEFVNYNDSEVSKRESLLKIRSTPNESVDDSF 1107
>sp|Q3KSM3|RDRP_PRV RNA-directed RNA polymerase OS=Pieris rapae virus PE=3 SV=1
Length = 1014
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
Query: 237 PMEFQRILELKGLKKADQQTILDDFNKHGPGTTQPTIAPSVVPAAPPAPPSSVIPNSASA 296
P+ F + K L + D Q + D + QP + VP+ P PPS+ PN A
Sbjct: 891 PVVFDTYYDHKQLAEVDGQLVGTDLHIKEEDERQPETSIDSVPSTGP-PPSNGDPN---A 946
Query: 297 GFITSREDVLTRAAALGRGAATTGFKRFLALTEAAKDRKDGPFRKL 342
G + + GR T G L LT+A R+ P RKL
Sbjct: 947 GGKPTDGPSKGKRKVKGRRPRTAGDPATLRLTDAGSSRRVKPPRKL 992
>sp|B4QZU1|PDE6_DROSI cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila simulans
GN=Pde6 PE=3 SV=1
Length = 1143
Score = 32.0 bits (71), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 268 TTQPTIAPSVVPAAPPAPPSSVIPNSASAGFIT-----SREDVLTRAAALGRGAAT 318
TT T+A V P A P P S IP S+S+G R+ R AA R + T
Sbjct: 55 TTISTVAGGVAPGAVPGPGSGAIPASSSSGNQVKLEHHHRQSNNNRPAATNRSSET 110
>sp|Q24592|JAK_DROME Tyrosine-protein kinase hopscotch OS=Drosophila melanogaster GN=hop
PE=1 SV=2
Length = 1177
Score = 32.0 bits (71), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 12/60 (20%)
Query: 219 SPVDSVADTYRALLPEGTPMEFQRI------------LELKGLKKADQQTILDDFNKHGP 266
SPV V+ T + L +G MEF R+ L+L GL AD T++ +++++GP
Sbjct: 605 SPVKDVSVTMKMLKSDGNFMEFFRLAQTWSLIQSPQFLKLYGLTLADPYTMVMEYSRYGP 664
>sp|Q87ST8|APAH_VIBPA Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=apaH PE=3 SV=1
Length = 268
Score = 32.0 bits (71), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 7 QDYQEVVQGLLQQLLISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQ 58
+D +E++ L +Q L++E DE V+C+ S ++ +T+ A V +II +
Sbjct: 93 KDREELLSWLAKQPLLAEHDEFVMCHAGISPQWDLETARQCAREVERIIQGE 144
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,849,372
Number of Sequences: 539616
Number of extensions: 4644193
Number of successful extensions: 20890
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 20793
Number of HSP's gapped (non-prelim): 97
length of query: 345
length of database: 191,569,459
effective HSP length: 118
effective length of query: 227
effective length of database: 127,894,771
effective search space: 29032113017
effective search space used: 29032113017
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)