Query 019132
Match_columns 345
No_of_seqs 117 out of 201
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 06:56:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019132.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019132hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2180 Late Golgi protein sor 100.0 1.3E-50 2.9E-55 415.1 24.2 264 3-266 448-738 (793)
2 PF06046 Sec6: Exocyst complex 99.8 9.8E-20 2.1E-24 188.6 18.3 223 24-264 312-547 (566)
3 KOG2180 Late Golgi protein sor 99.3 9.5E-13 2.1E-17 137.1 6.0 233 38-345 424-664 (793)
4 PF04437 RINT1_TIP1: RINT-1 / 99.1 1.6E-10 3.6E-15 118.8 10.6 221 20-259 237-488 (494)
5 KOG2286 Exocyst complex subuni 99.1 1.2E-08 2.6E-13 107.9 21.8 213 27-272 440-657 (667)
6 PF04091 Sec15: Exocyst comple 99.0 3.9E-09 8.5E-14 103.1 13.1 210 5-224 65-285 (311)
7 COG5173 SEC6 Exocyst complex s 98.7 3.3E-06 7.1E-11 87.1 21.6 210 28-257 490-710 (742)
8 PF10474 DUF2451: Protein of u 98.1 0.00035 7.6E-09 66.0 18.0 173 75-261 54-232 (234)
9 KOG0412 Golgi transport comple 97.3 0.012 2.6E-07 62.9 17.5 212 23-247 537-768 (773)
10 PF07393 Sec10: Exocyst comple 96.4 0.55 1.2E-05 50.9 21.4 208 23-247 479-699 (710)
11 KOG2176 Exocyst complex, subun 96.0 0.28 6E-06 53.4 16.3 186 33-229 551-741 (800)
12 PF10191 COG7: Golgi complex c 95.6 1.1 2.4E-05 49.3 19.4 152 62-229 560-751 (766)
13 KOG3691 Exocyst complex subuni 94.7 1.4 3.1E-05 48.6 16.4 186 65-264 775-970 (982)
14 KOG2218 ER to golgi transport 91.4 8.8 0.00019 41.9 16.2 155 31-186 501-675 (737)
15 PF14923 CCDC142: Coiled-coil 91.2 11 0.00024 39.2 16.2 115 101-219 260-379 (450)
16 KOG2307 Low density lipoprotei 85.8 25 0.00053 37.7 14.5 154 35-188 485-678 (705)
17 PF12022 DUF3510: Domain of un 83.8 5.3 0.00012 34.1 7.4 75 103-188 24-98 (125)
18 KOG2347 Sec5 subunit of exocys 78.7 20 0.00043 40.1 11.1 158 27-188 719-880 (934)
19 KOG3745 Exocyst subunit - Sec1 62.9 2.5E+02 0.0055 31.2 16.1 147 88-247 596-746 (763)
20 PF10474 DUF2451: Protein of u 59.4 1E+02 0.0022 29.1 10.3 87 120-214 18-108 (234)
21 PF10548 P22_AR_C: P22AR C-ter 59.4 28 0.00061 27.2 5.4 64 19-85 5-68 (74)
22 PF10540 Membr_traf_MHD: Munc1 56.0 1.3E+02 0.0029 25.9 11.2 105 116-228 4-137 (137)
23 KOG2675 Adenylate cyclase-asso 54.6 13 0.00028 38.5 3.5 26 299-324 258-284 (480)
24 KOG4182 Uncharacterized conser 52.0 29 0.00062 36.7 5.5 71 138-224 748-818 (828)
25 KOG1241 Karyopherin (importin) 50.5 36 0.00078 37.7 6.2 149 29-177 525-690 (859)
26 PF11101 DUF2884: Protein of u 50.1 2.2E+02 0.0049 26.7 11.9 136 2-147 47-206 (229)
27 KOG2211 Predicted Golgi transp 44.9 2.1E+02 0.0046 31.5 10.8 160 25-184 480-670 (797)
28 KOG2033 Low density lipoprotei 41.3 82 0.0018 34.7 7.1 73 111-183 642-716 (863)
29 PF10909 DUF2682: Protein of u 40.4 61 0.0013 25.7 4.5 41 45-87 28-71 (77)
30 cd08816 CARD_RIG-I_1 Caspase a 38.8 96 0.0021 25.3 5.5 54 120-176 5-58 (89)
31 PF09032 Siah-Interact_N: Siah 37.6 97 0.0021 24.7 5.4 43 168-218 4-46 (79)
32 PF14980 TIP39: TIP39 peptide 34.0 29 0.00063 25.1 1.7 13 2-14 35-47 (51)
33 PF12238 MSA-2c: Merozoite sur 33.2 4.1E+02 0.009 24.9 10.6 48 114-161 13-60 (205)
34 PF07462 MSP1_C: Merozoite sur 31.6 1.6E+02 0.0035 31.5 7.3 30 237-266 223-259 (574)
35 COG1283 NptA Na+/phosphate sym 31.4 5.1E+02 0.011 27.8 11.0 125 17-166 389-520 (533)
36 PF15112 DUF4559: Domain of un 30.6 5.5E+02 0.012 25.6 11.3 166 28-220 122-293 (307)
37 TIGR00255 conserved hypothetic 30.5 55 0.0012 32.1 3.6 72 59-130 212-287 (291)
38 PF11867 DUF3387: Domain of un 30.2 4.7E+02 0.01 25.7 10.2 106 33-149 214-326 (335)
39 PF01031 Dynamin_M: Dynamin ce 30.0 4E+02 0.0087 25.4 9.5 135 69-213 67-209 (295)
40 PHA03373 tegument protein; Pro 29.5 5.1E+02 0.011 24.8 13.9 37 228-264 139-176 (247)
41 PF04878 Baculo_p48: Baculovir 29.5 1.8E+02 0.0039 29.6 6.9 81 21-103 74-169 (374)
42 PF02194 PXA: PXA domain; Int 29.4 3.9E+02 0.0084 23.4 9.2 70 76-155 4-74 (185)
43 PLN03162 golden-2 like transcr 28.2 2.8E+02 0.006 28.6 8.0 41 222-262 246-287 (526)
44 PF04695 Pex14_N: Peroxisomal 28.0 1.2E+02 0.0025 26.2 4.8 44 222-265 3-51 (136)
45 COG3337 CRISPR system related 27.9 1.1E+02 0.0023 26.6 4.3 115 37-172 9-129 (134)
46 KOG0251 Clathrin assembly prot 26.0 8.1E+02 0.018 26.0 13.6 130 25-166 42-191 (491)
47 PF00255 GSHPx: Glutathione pe 23.3 19 0.00041 30.1 -0.9 19 29-48 22-40 (108)
48 PRK11820 hypothetical protein; 21.2 1.4E+02 0.003 29.3 4.4 72 59-130 209-284 (288)
49 PF05859 Mis12: Mis12 protein; 21.1 2.5E+02 0.0053 24.3 5.6 59 32-95 16-75 (144)
50 PF01213 CAP_N: Adenylate cycl 20.5 34 0.00073 34.0 0.0 21 304-324 261-282 (312)
No 1
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-50 Score=415.06 Aligned_cols=264 Identities=34% Similarity=0.563 Sum_probs=245.8
Q ss_pred hhHHHHHHHHHhcc---------ccc-------------ccCCccchhhhhhhcccHHHHHHhHHHHHHHHHHhhhhhcc
Q 019132 3 QSFLQDYQEVVQGL---------LQQ-------------LLISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLA 60 (345)
Q Consensus 3 ~~~l~~y~~~i~~~---------~~~-------------~~~~~e~~k~~C~IINTADYC~~Ti~qLeekl~e~id~~~k 60 (345)
+|||++|+.+|+.. ++. -+.+.+++..+|++++||+||.+|+.|||++++|+++..|.
T Consensus 448 ~k~LreYa~kil~~~lP~~t~~s~g~~v~~l~~~e~~~~~~~t~d~l~di~~~lst~e~~~~tt~qle~kl~e~~~~~~~ 527 (793)
T KOG2180|consen 448 SKWLREYAQKILLGNLPDTTSSSDGAAVYLLLRIEGAEYCRFTIDQLLDICCILSTAEYCLATTIQLEKKLKEIVDASYI 527 (793)
T ss_pred HHHHHHHHHHHhhccCCcccccccCchhhhHHHhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 69999999999611 111 13455789999999999999999999999999999999999
Q ss_pred CCcccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCCCCCccCCCcCccHHHHHHHHhhhHHHHhhhc--cHHH
Q 019132 61 DGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLL--SPIY 138 (345)
Q Consensus 61 ekIdf~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L--~~~Y 138 (345)
.+|||+.+.+.|+.+++.|++.+|+++++.|+|.+..|.++.|.+++.|||||+|++++..++.+.+|.|++++ ++.|
T Consensus 528 ~~vs~s~~r~~~~~~~~~s~q~lv~D~e~a~~~~lt~msk~~~~~l~~vgDQss~v~s~~~h~~q~~~~i~~~~~~~r~~ 607 (793)
T KOG2180|consen 528 KGVSFSEEREVFSSKISVSLQFLVQDLENALDPDLTPMSKMQWQNLEGVGDQSSYVSSLNFHLSQFVPLIRDALALDRKY 607 (793)
T ss_pred hhcchHHHHHHHHHHHhhhHHHHHHHHHHhhCcccChHHHHHHHHhcCccccchhhHHHHHHHHhhhHHHHHHhccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987 6799
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhccCCChhhHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhc
Q 019132 139 FQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVIL 218 (345)
Q Consensus 139 ~~~fcDKlv~~fi~~f~~~I~k~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~ 218 (345)
|.+||++++..|+++|++.+|||+|++.+||||||+|++++|++|+++|+......+-..|++||++.|+++|++|||||
T Consensus 608 f~~fc~r~a~~f~~kf~~~l~R~k~~s~~g~EQLlldt~slK~~ll~lp~~~s~~n~~~~y~~~~~~~m~~~e~iiK~lm 687 (793)
T KOG2180|consen 608 FAQFCVRLAASFIPKFLNVLFRAKPISVVGAEQLLLDTESLKDALLTLPPLRSLFNDKRPYKRHVDNNMTQAEMIIKVLM 687 (793)
T ss_pred HHHhhHHHHhhcchHHHHHHHHhhhHhhhHHHHHHHHHHHHHHHhhcCCchhhhccccchHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999877544344499999999999999999999
Q ss_pred CC---chhHHHHHHhhCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHhcCC
Q 019132 219 SP---VDSVADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDFNKHGP 266 (345)
Q Consensus 219 sP---~e~~ve~Y~~L~~d~S~~~FqkIL~LKGl~k~eq~~lle~f~~~~~ 266 (345)
+| +++|+++|..|+||.+.++|++||+|||++|.|+...+..|+-...
T Consensus 688 ~p~~~~~~f~e~yikL~~~~~~a~~~~vLelKgv~r~d~~~~l~~~~~~~~ 738 (793)
T KOG2180|consen 688 TPLDPADDFYEQYIKLLPDPDSAEWQKVLELKGVKRDDALWKLLWFAYNLE 738 (793)
T ss_pred CCCCchHHHHHHHHHhcCCCcHHHHHHHHHhcCCcHHHHHHHHHHHHHhcc
Confidence 98 4799999999999999999999999999999999999999986544
No 2
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=99.83 E-value=9.8e-20 Score=188.62 Aligned_cols=223 Identities=17% Similarity=0.292 Sum_probs=192.7
Q ss_pred ccchhhhhhhcccHHHHHHhHHHHHHHHHHhhhhhccCCc--ccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccCC
Q 019132 24 ERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGV--DMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRV 101 (345)
Q Consensus 24 ~e~~k~~C~IINTADYC~~Ti~qLeekl~e~id~~~kekI--df~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~~ 101 (345)
.--+.++|.++|.+..|.+.+++++.++.+.+++.|.+++ +++...++|.++.+.|.+.|+..+..+++|.|+.++..
T Consensus 312 ~~~~eyliA~~N~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~if~Dl~p~~~~Lft~ 391 (566)
T PF06046_consen 312 PGYLEYLIAVANNCLRCRDYVESLEQKFEEKVSQKYMERISSDLEELMDGFDDLAKECCQYLLEEIFNDLKPHFKKLFTK 391 (566)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHCTHHHHCTTTSG
T ss_pred cchHHHHHHHhccHHHHHHHHHHHHHhcccccchHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCcC
Confidence 4567899999999999999999999999999998888774 89999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHh----c--cCCChhhHhhHHhh
Q 019132 102 PWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFK----C--KHISETGAQQMLLD 175 (345)
Q Consensus 102 nW~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k----~--kpis~~gaeQLLLD 175 (345)
.|... ..|.+|+.++.++++.++.+|++.||..|++.+...++..|+.++++ | +.....+|+||..|
T Consensus 392 ~W~~~-------~~~~~I~~Ti~dY~~d~~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~~a~~i~~D 464 (566)
T PF06046_consen 392 KWYSG-------EAVDTICATIEDYLQDFQHYLRPPYFQELIEELHDRVVKEYLRALMKKKIKFKNKEERKEAAERIRRD 464 (566)
T ss_dssp GGCTS--------HHHHHHHHHHHHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHGGGG---------CCCCCHHHHHHH
T ss_pred cCcCc-------chHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHH
Confidence 99964 69999999999999999999999999999999999999999999976 3 23566799999999
Q ss_pred HHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHh-cCCchhHHHHHHhh---CCCCCHHHHHHHHhhcC-CC
Q 019132 176 TQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVI-LSPVDSVADTYRAL---LPEGTPMEFQRILELKG-LK 250 (345)
Q Consensus 176 ~~sLK~~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL-~sP~e~~ve~Y~~L---~~d~S~~~FqkIL~LKG-l~ 250 (345)
.+.|+++|.++.+ ...+...+..++.++.++ ..+++++...|..| .||.+...+..||.+|| ++
T Consensus 465 ~~~l~~~F~~~~~-----------~~~~~~~~~~l~~l~~ll~~~d~~~i~l~~~~l~~~ypD~~~~~v~alL~~R~D~~ 533 (566)
T PF06046_consen 465 AEQLKSFFSKLGS-----------KSEVKSSFDVLEDLLELLRLEDPEMIKLEVSSLLQKYPDISEEHVEALLALRGDLS 533 (566)
T ss_dssp HHHHHHHHHHHTH-----------HHHHHHHHHHHHHHHHHH-HS-CCCHHHHHHHHHCC-TT--SHHHHHHHCT-TT--
T ss_pred HHHHHHHHHHhcc-----------cccccchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCC
Confidence 9999999999883 789999999999999999 77777775555555 57888899999999997 99
Q ss_pred HHHHHHHHHHHHhc
Q 019132 251 KADQQTILDDFNKH 264 (345)
Q Consensus 251 k~eq~~lle~f~~~ 264 (345)
|++.+.+++..+..
T Consensus 534 r~~~~~il~~~~~~ 547 (566)
T PF06046_consen 534 RSEVKEILEILREI 547 (566)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999854
No 3
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=9.5e-13 Score=137.09 Aligned_cols=233 Identities=24% Similarity=0.172 Sum_probs=187.4
Q ss_pred HHHHHhHHHHHHHHHHhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCCCCCccCCCcCccHH
Q 019132 38 EYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVN 117 (345)
Q Consensus 38 DYC~~Ti~qLeekl~e~id~~~kekIdf~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW~~~e~VgD~S~YV~ 117 (345)
.+|.....+|-+.. |+-+...+.|+.-.+.|...|-.+. .+|...+++|
T Consensus 424 kkcltq~~~Ls~n~----dpl~~~~~~f~k~LreYa~kil~~~--------------------lP~~t~~s~g------- 472 (793)
T KOG2180|consen 424 KKCLTQCSELSENN----DPLIALLAVFSKWLREYAQKILLGN--------------------LPDTTSSSDG------- 472 (793)
T ss_pred HHHHHHHHHhccCC----chHHHHHHHHHHHHHHHHHHHhhcc--------------------CCcccccccC-------
Confidence 49999999998776 6667777888888888887666553 8899877776
Q ss_pred HHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhccCCChhhHhhHHhhHHHHHHHHhhCCCCCCCC----
Q 019132 118 GINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQT---- 193 (345)
Q Consensus 118 ~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~~~---- 193 (345)
...|+..+. |.--..-++.++|+|+..++++....|....+.
T Consensus 473 -----------------~~v~~l~~~-----------------e~~~~~~~t~d~l~di~~~lst~e~~~~tt~qle~kl 518 (793)
T KOG2180|consen 473 -----------------AAVYLLLRI-----------------EGAEYCRFTIDQLLDICCILSTAEYCLATTIQLEKKL 518 (793)
T ss_pred -----------------chhhhHHHh-----------------hhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222221 333444566689999999999998888764332
Q ss_pred --CCchhhHHHHHHhHHHHHHHhHHhcCCchhHHHHHHhhCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCCCCCC
Q 019132 194 --SNAASYTKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDFNKHGPGTTQP 271 (345)
Q Consensus 194 --~~~~sY~K~V~~~~~klE~lLKvL~sP~e~~ve~Y~~L~~d~S~~~FqkIL~LKGl~k~eq~~lle~f~~~~~~~~~~ 271 (345)
...++|.+.|+-.+.+.+...++..+|.....+.|..+.|+.++-.++++..++|+. ||++++..+..|..+....
T Consensus 519 ~e~~~~~~~~~vs~s~~r~~~~~~~~~s~q~lv~D~e~a~~~~lt~msk~~~~~l~~vg--DQss~v~s~~~h~~q~~~~ 596 (793)
T KOG2180|consen 519 KEIVDASYIKGVSFSEEREVFSSKISVSLQFLVQDLENALDPDLTPMSKMQWQNLEGVG--DQSSYVSSLNFHLSQFVPL 596 (793)
T ss_pred HHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHHHHhhCcccChHHHHHHHHhcCcc--ccchhhHHHHHHHHhhhHH
Confidence 446789999999999999999999999988889999999999999999999999998 9999999999997766444
Q ss_pred CccCCCCCCCCCCCCCcccCCCCCcccccchHHHHHHHHHhcCCCCchhhHHHHHHHHHhhhcC--CCccccccCC
Q 019132 272 TIAPSVVPAAPPAPPSSVIPNSASAGFITSREDVLTRAAALGRGAATTGFKRFLALTEAAKDRK--DGPFRKLFNT 345 (345)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 345 (345)
.+...+..+. +.+.-....+.++++++++++.|+.. .+.+|+..+++.||++|+|. .||+|++||+
T Consensus 597 i~~~~~~~r~----~f~~fc~r~a~~f~~kf~~~l~R~k~----~s~~g~EQLlldt~slK~~ll~lp~~~s~~n~ 664 (793)
T KOG2180|consen 597 IRDALALDRK----YFAQFCVRLAASFIPKFLNVLFRAKP----ISVVGAEQLLLDTESLKDALLTLPPLRSLFND 664 (793)
T ss_pred HHHHhccccc----hHHHhhHHHHhhcchHHHHHHHHhhh----HhhhHHHHHHHHHHHHHHHhhcCCchhhhccc
Confidence 4433333322 44455666789999999999999998 89999999999999999996 9999999995
No 4
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=99.15 E-value=1.6e-10 Score=118.81 Aligned_cols=221 Identities=21% Similarity=0.312 Sum_probs=158.9
Q ss_pred ccCCccchhhhhhhcccHHHHHHhHHHHHHHHH-----------------Hhhhhhc-cCCcccchhhhHHHHHHHHHHH
Q 019132 20 LLISERDERVICYIVNSAEYCHKTSGDLAESVS-----------------KIIDSQL-ADGVDMSEVQDEFSAVITKALV 81 (345)
Q Consensus 20 ~~~~~e~~k~~C~IINTADYC~~Ti~qLeekl~-----------------e~id~~~-kekIdf~~e~D~F~~visk~I~ 81 (345)
...+...+..+|.++|+|+||...+.+.+|.+- +..+..- .+.--|+++-..|..+..+...
T Consensus 237 ~~~~~~~l~~l~~~lnsa~yi~~~L~eW~e~~~Flq~~~~~~~~~~~~~~~~~~~~~~~~~siFde~i~~y~~l~~~~~~ 316 (494)
T PF04437_consen 237 SLSGDSGLERLCKILNSANYIENVLREWSEDVFFLQMRAKESESSNNSLEDIANETSSEEGSIFDETISAYEKLRKRMLE 316 (494)
T ss_dssp CEEHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHH------------HHHHHHHHHTT--S-TTHHHHHHHHHHHTHHHH
T ss_pred hccCCchHHHHHHHHHHHHHHHHHHHHhcCCCeeehhhccchhhcccccccccccccCCCCCcHHHHHHHHHHHHHHHHH
Confidence 444567789999999999999999998887432 2222110 1234699999999999999999
Q ss_pred HHHHHHhhhchHHhhcccC-CCCCCCccC-----CCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Q 019132 82 TLVLGLETKFDNEMAGMTR-VPWGSLESV-----GDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFY 155 (345)
Q Consensus 82 ~LV~~le~~le~a~~~m~~-~nW~~~e~V-----gD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~ 155 (345)
.+++.+...++..++...+ ..|...+.. ...|+-.......|+..+..+...|++..|+.+...+++.+..-++
T Consensus 317 ~iv~~v~~~~k~~lk~Y~k~~~W~~~~~~~~~~~~~~S~el~~~L~~L~~~L~~L~~~L~~~~f~~i~r~ia~~l~~~l~ 396 (494)
T PF04437_consen 317 SIVDRVVKEFKASLKAYFKRSQWSSIESPSDSSPLSPSPELVPALSLLRSRLSFLERSLPPADFRRIWRRIASKLDDYLW 396 (494)
T ss_dssp HHHHHHHHHHHHHTHHHHT--GGGT-------------GGGHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccCCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 999877665 4778888899999999999999999999999999999999999999
Q ss_pred HHhHhccCCChhhHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhcCCchh-------HHHHH
Q 019132 156 ANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDS-------VADTY 228 (345)
Q Consensus 156 ~~I~k~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~sP~e~-------~ve~Y 228 (345)
+.|+.....+.-||.||..|+..|...|.. |.....+.|.++.-.+++|.-|.+. +-..|
T Consensus 397 ~~Il~~n~Fs~~Ga~Ql~~D~~~L~~~~~~-------------~~~~p~~~f~~l~E~~~LL~L~~~~~~~~~~~l~~~~ 463 (494)
T PF04437_consen 397 ESILMSNKFSRAGAAQLQFDMRALFSVFSQ-------------YTPRPEAFFKRLREACKLLNLPYGSAKLLKEFLSKSY 463 (494)
T ss_dssp HTTTTTS-B-HHHHHHHHHHHHHHHTTS---------------TTSGG-HHHHHHHHHHHHHGGGG-CGG--TTTTSHHH
T ss_pred HHhhhcCeeChhHHHHHHHHHHHHHHHHHh-------------hccCHHHHHHHHHHHHHHcCCCCcchhhhHHHHhhhh
Confidence 999999999999999999999998877744 4455567788888889999877532 12222
Q ss_pred HhhCCCCCHHHHHHHHhhcCCCHHHHHHHHH
Q 019132 229 RALLPEGTPMEFQRILELKGLKKADQQTILD 259 (345)
Q Consensus 229 ~~L~~d~S~~~FqkIL~LKGl~k~eq~~lle 259 (345)
.. ..++.++|+--|+..=...+..+
T Consensus 464 ~~------~~~~~~~l~~lgI~~Ls~~ea~~ 488 (494)
T PF04437_consen 464 IK------NENARKLLEELGISHLSPSEARD 488 (494)
T ss_dssp HH------HT--SHHHHHTT-SSS-HHHHHH
T ss_pred cc------chHHHHHHHHCCCCcCCHHHHHH
Confidence 22 34666666665665433333333
No 5
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=1.2e-08 Score=107.93 Aligned_cols=213 Identities=14% Similarity=0.200 Sum_probs=173.0
Q ss_pred hhhhhhhcccHHHHHHhHHHHHHHHHHhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCCCCC
Q 019132 27 ERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSL 106 (345)
Q Consensus 27 ~k~~C~IINTADYC~~Ti~qLeekl~e~id~~~kekIdf~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW~~~ 106 (345)
..|...++|.+.-|..-+.++-.+. +. +..-.|+|..+.+.+...|+..+..||+|++..++...|...
T Consensus 440 ~~y~iA~~N~~~~~a~~~~~~~~~~-----d~------~~~~l~~~~~i~~~~~~~l~e~~~~d~~~~~~~lf~~~W~~g 508 (667)
T KOG2286|consen 440 REYLIANINNNLKMAMLMVNLKSKY-----DT------LKGLLDGFIEIAKHGVSGLLEEIFLDLQPLLNKLFTKEWCAG 508 (667)
T ss_pred HHHHHHHHhchhHHHHHHHHHHhcc-----ch------hHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhch
Confidence 4667778999999998888877666 11 445689999999999999999999999999999999999864
Q ss_pred ccCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhccCCChhhHhhHHhhHHHHHHHHhhC
Q 019132 107 ESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDI 186 (345)
Q Consensus 107 e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis~~gaeQLLLD~~sLK~~Ll~L 186 (345)
.-+..|+.++.++++++.++..+. |..|.+.+...++-.|+.+|.+=|-.-.-++|+|..|...+..+|.++
T Consensus 509 -------~~~~~Iv~T~~dy~~D~~~~~~~~-f~~fi~e~~~~~v~~Yl~~l~~kr~~~~~~~~~i~~d~~~~~~~f~~~ 580 (667)
T KOG2286|consen 509 -------SVTENIVATLDDYLPDFKELMGEY-FVRFIEEASLELVIEYLRALSKKRASIQELIEKIKSDAETLYHFFRKY 580 (667)
T ss_pred -------hhHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHh
Confidence 368889999999999999999887 999999999999999999997654433368999999999999999877
Q ss_pred CCCCCCCCCchhhHHHHHHhHHHHHHHhHHhcC-CchhHH---HHHHhhCCCCCHHHHHHHHhhc-CCCHHHHHHHHHHH
Q 019132 187 PSLGRQTSNAASYTKFVSREMSKAEALLKVILS-PVDSVA---DTYRALLPEGTPMEFQRILELK-GLKKADQQTILDDF 261 (345)
Q Consensus 187 P~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~s-P~e~~v---e~Y~~L~~d~S~~~FqkIL~LK-Gl~k~eq~~lle~f 261 (345)
-+ -|+.-..-+..+-+++.. |+|.+. .+|...-||.+.+...+||..| |+++++...+++..
T Consensus 581 ~~-------------~~~~~~~~~~~l~el~~~~d~d~~~~~~~~l~~~YpD~~~~~l~~il~~R~dls~~~~k~i~~~~ 647 (667)
T KOG2286|consen 581 GS-------------DVDTLISTISTLAELISLQDPDLIKLEVSTLLECYPDIPKDHLEAILKIRGDLSRSEKKKIVDIL 647 (667)
T ss_pred Cc-------------chhhhhhhhHHHHHHHhcCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 65 223334445566666655 777654 4555556899999999999999 89999999999988
Q ss_pred HhcCCCCCCCC
Q 019132 262 NKHGPGTTQPT 272 (345)
Q Consensus 262 ~~~~~~~~~~~ 272 (345)
+. +.+...|+
T Consensus 648 ~~-~~~~~~~~ 657 (667)
T KOG2286|consen 648 KE-SMGSQEPD 657 (667)
T ss_pred HH-HHhhhCcC
Confidence 73 34444443
No 6
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=99.01 E-value=3.9e-09 Score=103.07 Aligned_cols=210 Identities=17% Similarity=0.225 Sum_probs=139.0
Q ss_pred HHHHHHHHHhc------ccccccCCccchhhhhhhcccHHHHHHhHHHHHHHHHHhhhhhc--cCCcccchhhhHHHHHH
Q 019132 5 FLQDYQEVVQG------LLQQLLISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQL--ADGVDMSEVQDEFSAVI 76 (345)
Q Consensus 5 ~l~~y~~~i~~------~~~~~~~~~e~~k~~C~IINTADYC~~Ti~qLeekl~e~id~~~--kekIdf~~e~D~F~~vi 76 (345)
.|+.|.+.++. ....+..+ -.+..++=|+...+|+......||+-+......+- ...+.+. ..+.|.+..
T Consensus 65 ~v~ks~d~lL~~~l~~~L~~~i~~~-~~l~qi~Qi~iNl~~le~Ac~~le~~l~~~~~~~~~~~~~~~l~-a~~~f~~~r 142 (311)
T PF04091_consen 65 IVRKSLDRLLTRVLNGSLKSKIRSS-LNLSQIVQIVINLEYLEKACKELEEFLSSLRGIPQSAGGHIRLK-ATKMFKDAR 142 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-T-S-HHHHHHHHHHHHHHHTTHHHHHHHHHHHHT-----------------S---T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCCCccchHhHhhh-hHHHHHHHH
Confidence 45556655542 22233334 56777888888899999999999999988874322 1223343 459999999
Q ss_pred HHHHHHHHHHHhhhchHHhhcccCCCCCCCccCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Q 019132 77 TKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYA 156 (345)
Q Consensus 77 sk~I~~LV~~le~~le~a~~~m~~~nW~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~ 156 (345)
+.|-+.|...+..+++--+ ++...||...+..++.|.||.++...|+..+..+...|++.+....|-...+.+..+|++
T Consensus 143 ~~Ae~~I~~lv~~KIDe~l-ela~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~l~~LP~~v~~~~~~~a~~his~~l~~ 221 (311)
T PF04091_consen 143 KAAEKRIFELVNSKIDEFL-ELAEYDWTPTEPPGEPSDYINDLIQFLETTFSSTLTNLPPSVKQLVYFSACDHISESLLD 221 (311)
T ss_dssp THHHHHHHHHHHHHHHHHH-TT--TT--------S--HHHHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-hhcccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999999999988888999999999999999999999999
Q ss_pred Hh--HhccCCChhhHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhcCCc-hhH
Q 019132 157 NI--FKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPV-DSV 224 (345)
Q Consensus 157 ~I--~k~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~sP~-e~~ 224 (345)
.| -.+|.|++.|.+|+.+|+..+..+.-++|..+.+. ..+...|..+..++-++++.. +.|
T Consensus 222 ~Ll~~~vk~in~~al~~~~~Dv~~lE~f~~~~~~~~~~~-------~~L~~~F~eLrQlvdLl~s~~~~~y 285 (311)
T PF04091_consen 222 LLLSDDVKRINMNALQNFDLDVKYLESFADSLPVPGNNI-------PSLRETFAELRQLVDLLLSDDWEEY 285 (311)
T ss_dssp HHT---------TTHHHHHHHHHHHHHHHTT-SSSS--S-------STTGGGGHHHHHHHHHHH-------
T ss_pred HhcCCcccccCHHHHHHHHHHHHHHHHHHHhCcCccccc-------ccHHHHHHHHHHHHHHHhcCCHHHH
Confidence 99 77799999999999999999999999998765442 344566788889999999874 544
No 7
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=98.68 E-value=3.3e-06 Score=87.06 Aligned_cols=210 Identities=12% Similarity=0.118 Sum_probs=157.9
Q ss_pred hhhhhhcc----cHHHHHHhHHHHHHHHHHhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCC
Q 019132 28 RVICYIVN----SAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPW 103 (345)
Q Consensus 28 k~~C~IIN----TADYC~~Ti~qLeekl~e~id~~~kekIdf~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW 103 (345)
.|+..+-| -|+|.-.+...-.+.+..-......+. |...-|+|.+|..-+...|+..+..+|.|++.+++..+|
T Consensus 490 eyliav~Nd~lK~A~y~~~~~sntfeLitseye~d~~~~--lgkTvDgfi~I~~~s~~~l~~~i~~d~~pa~~~iF~~~W 567 (742)
T COG5173 490 EYLIAVGNDGLKIAQYITSLPSNTFELITSEYENDEVKE--LGKTVDGFIDILKASNTFLAEFIIYDCQPAIDKIFTDEW 567 (742)
T ss_pred HHHHHHcCCcchHHHHHHhcchhhhhhhhHHHHHHHHHH--hcccchhHHHHHhhhhHHHHHHHHHhhhhhHHHhcCccc
Confidence 44444544 477777777666666666555544433 777889999999999999999999999999999999999
Q ss_pred CCCccCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhccC-CChh-hHhhHHhhHHHHHH
Q 019132 104 GSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKH-ISET-GAQQMLLDTQAVKT 181 (345)
Q Consensus 104 ~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~kp-is~~-gaeQLLLD~~sLK~ 181 (345)
+.. +-+..|+.++++++.++.+++++..|-+|.+.+..+++.+|+.+|.+=+. +.+- +.|||.-|..-+..
T Consensus 568 y~g-------S~~k~IvdTl~dyl~D~~~~M~~~lFv~Fi~e~s~~~vi~yl~~l~~k~a~~~~~na~~~lksD~~~~y~ 640 (742)
T COG5173 568 YGG-------SVTKVIVDTLQDYLSDYQNTMSEYLFVTFIHELSMSIVIAYLKQLGRKRASIAEENASRTLKSDHTKLYE 640 (742)
T ss_pred ccc-------chHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 953 46889999999999999999999999999999999999999999965533 3333 68999999999999
Q ss_pred HHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhc-CCchh---HHHHHHhhCCCCCHHHHHHHHhhc-CCCHHHHHH
Q 019132 182 ILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVIL-SPVDS---VADTYRALLPEGTPMEFQRILELK-GLKKADQQT 256 (345)
Q Consensus 182 ~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~-sP~e~---~ve~Y~~L~~d~S~~~FqkIL~LK-Gl~k~eq~~ 256 (345)
.|..+-. ..+|...+.-++.++=.+. .|.|. .+..|....+|.-.+-...||.-+ ++.++=.++
T Consensus 641 ~f~~y~d-----------~e~~k~tl~pI~k~~~~m~~~~~d~~~~~~~~lkeiYwD~~~sli~~Ilk~R~Dl~~sIiqk 709 (742)
T COG5173 641 MFSGYGD-----------PEDVKTTLSPILKIIPLMDTRNDDLFIVEVKSLKEIYWDIKKSLIKTILKKRQDLTESIIQK 709 (742)
T ss_pred HHHhhCC-----------HHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHhccchHHHHHHHHHhhhhhHHHHHHH
Confidence 9977765 4566666665433333323 34554 344455555676567778888776 787773333
Q ss_pred H
Q 019132 257 I 257 (345)
Q Consensus 257 l 257 (345)
.
T Consensus 710 ~ 710 (742)
T COG5173 710 K 710 (742)
T ss_pred H
Confidence 3
No 8
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=98.07 E-value=0.00035 Score=65.97 Aligned_cols=173 Identities=16% Similarity=0.210 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHhhhchHHhhcccCCCCCCCccCCCcCccHHHHHHHHhhhHHHHhh-----hccHHHHHHHHHHHHHH
Q 019132 75 VITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGS-----LLSPIYFQFFLDKLASS 149 (345)
Q Consensus 75 visk~I~~LV~~le~~le~a~~~m~~~nW~~~e~VgD~S~YV~~i~~~L~~~~~~i~~-----~L~~~Y~~~fcDKlv~~ 149 (345)
+..-+....+..+ -+++.....|.++.|.--|-....|+||..+...+......+.. .+++.-..-+.+.++..
T Consensus 54 Lr~~iy~~~a~~~-l~~~~i~~~Ia~vKWdvkev~~qhs~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~~ 132 (234)
T PF10474_consen 54 LREPIYKCVASRL-LDLEQILNSIANVKWDVKEVMSQHSSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRLIFF 132 (234)
T ss_pred HHHHHHHHHHHHH-cCHHHHHHHHHHcCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 3333444444433 36678889999999987777778999999999999887666633 33566667777888888
Q ss_pred HHHHHHHHhHhccCCChhhHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhcCCchhHHHHHH
Q 019132 150 LGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDSVADTYR 229 (345)
Q Consensus 150 fi~~f~~~I~k~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~sP~e~~ve~Y~ 229 (345)
+...+++..=+.|+-|..|--+|.||.+.+...|-.+-... +.| +.+-.|..+|..=-|.+.+.+==.
T Consensus 133 ~~~~Lveg~s~vkKCs~eGRalM~lD~q~~~~~le~l~~~~---~~p---------~~~~Ve~YIKAyYl~e~e~~~W~~ 200 (234)
T PF10474_consen 133 AFETLVEGYSRVKKCSNEGRALMQLDFQQLQNKLEKLSGIR---PIP---------NREYVENYIKAYYLPEEELEEWIR 200 (234)
T ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHcCCC---CCc---------cHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888888899999999999999999999998775422 222 234455777777777654333223
Q ss_pred hhCCCCCHHHHHHHHhhc-CCCHHHHHHHHHHH
Q 019132 230 ALLPEGTPMEFQRILELK-GLKKADQQTILDDF 261 (345)
Q Consensus 230 ~L~~d~S~~~FqkIL~LK-Gl~k~eq~~lle~f 261 (345)
.. ++.|...+..++..- +.+|.+.+.+++..
T Consensus 201 ~h-~eYs~~ql~~Lv~~~~~~~kk~r~~ll~~i 232 (234)
T PF10474_consen 201 TH-TEYSKKQLVGLVNCAAASKKKTRQRLLNAI 232 (234)
T ss_pred hC-cccCHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 33 678888888888776 55788888887754
No 9
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.012 Score=62.89 Aligned_cols=212 Identities=12% Similarity=0.191 Sum_probs=159.5
Q ss_pred CccchhhhhhhcccHHHHHHhHHHHHHHHHHhhhhhccCCc----------ccchhhhHHHHHHHHHHHHHHHH-Hhhhc
Q 019132 23 SERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGV----------DMSEVQDEFSAVITKALVTLVLG-LETKF 91 (345)
Q Consensus 23 ~~e~~k~~C~IINTADYC~~Ti~qLeekl~e~id~~~kekI----------df~~e~D~F~~visk~I~~LV~~-le~~l 91 (345)
++......-.-+|++|-|.+-+..|-+.+.+.+.+-|...+ ++.+..+.|-++.+.|++.|... +-..+
T Consensus 537 ~d~~~~~fl~~LNn~~ls~eyi~~L~~~le~~~~~vf~~~~d~~~l~~~l~~l~~l~~~f~~L~k~g~~~Lf~~~lkpRi 616 (773)
T KOG0412|consen 537 ADLAKENFLTALNNADLSKEYIHTLKKTLESDCTEVFPQNFDRAKLKSCLSNLEALSLKFKDLLKWGMEQLFSTVLKPRI 616 (773)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Confidence 33444556678999988888777776666655554443322 56677789999999999999996 45899
Q ss_pred hHHhhcccCCCCCC-CccC---CCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhccCCChh
Q 019132 92 DNEMAGMTRVPWGS-LESV---GDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHISET 167 (345)
Q Consensus 92 e~a~~~m~~~nW~~-~e~V---gD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis~~ 167 (345)
+|.+..+.+++..- .+.. +.+-+||.+....+.+.+--+++.|.+..+..|..-+++.++...=..|+||+ .+..
T Consensus 617 ~~~id~f~~is~~ls~edy~~~ea~d~~Vq~fl~~v~~l~~~~k~~ltp~nY~sLlsl~~~~ia~~LE~~i~k~~-FNrl 695 (773)
T KOG0412|consen 617 RPWIDTFVNISYNLSEEDYAAYEANDPWVQQFLSSVEQLLAELKNSLTPENYDSLLSLIVDEIATQLEQIIWKIQ-FNRL 695 (773)
T ss_pred hhhhhhhhhhhccccHHHHhhhccCChHHHHHHHHHHHHHHhhhcccChhhHHHHHHHHHHHHHHHHHHHHHHhH-HHhh
Confidence 99998888887752 2222 23457999999999999999999998888888888777777777666677776 8999
Q ss_pred hHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhcCCchhHHHHHHhhCCC-----CCHHHHHH
Q 019132 168 GAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDSVADTYRALLPE-----GTPMEFQR 242 (345)
Q Consensus 168 gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~sP~e~~ve~Y~~L~~d-----~S~~~Fqk 242 (345)
||=||=-|+.+|=..|...- .-.|...|.||-.|+-+|.-..+.....|+.--.. -|+++-.+
T Consensus 696 G~lqLDre~r~lis~lt~~t------------~~~lRdKf~RLtQIatLLnle~~se~le~w~~~~g~~twrLt~~EVr~ 763 (773)
T KOG0412|consen 696 GGLQLDRELRALISYLTGVT------------QWNLRDKFARLTQIATLLNLEKDSEILEYWGPNSGPLTWRLTPAEVRK 763 (773)
T ss_pred cchHhhHHHHHHHHHhhccc------------chhHHHHHHHHHHHHHHHcccccchHHHhcCCCCCCceEEeCHHHHHH
Confidence 99999999999998883222 35688899999999999988877777777543211 35666688
Q ss_pred HHhhc
Q 019132 243 ILELK 247 (345)
Q Consensus 243 IL~LK 247 (345)
+|.||
T Consensus 764 vl~lr 768 (773)
T KOG0412|consen 764 VLALR 768 (773)
T ss_pred HHHhh
Confidence 88887
No 10
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=96.38 E-value=0.55 Score=50.90 Aligned_cols=208 Identities=12% Similarity=0.123 Sum_probs=144.3
Q ss_pred CccchhhhhhhcccHHHHHHhHHHHHHHHHHhhhhhccCCcc----cchhhhHHH----HHHHHHHHHHHHHHhhhchHH
Q 019132 23 SERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVD----MSEVQDEFS----AVITKALVTLVLGLETKFDNE 94 (345)
Q Consensus 23 ~~e~~k~~C~IINTADYC~~Ti~qLeekl~e~id~~~kekId----f~~e~D~F~----~visk~I~~LV~~le~~le~a 94 (345)
+..++. -.-+||.|+-...+++.--+. .+-|-.....+ ....+..|. +-++.+++..+..+...++..
T Consensus 479 ~~~~l~-fl~~i~~~~~i~~l~~~~~~~---~l~pl~~~~~~~~~~~~~~k~~~~~~le~~v~~gL~~~i~~l~~~v~~i 554 (710)
T PF07393_consen 479 EVPPLV-FLELINQADTILQLLQIFYKE---ELLPLIQSSPDFLNECIQKKKSFESRLEEKVNAGLNKGIDVLMNWVEFI 554 (710)
T ss_pred CCCCcc-HHHHHHHHHHHHHHHHHHHHH---HHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335666 555889988877777644332 22222222222 223333333 334455555555666666777
Q ss_pred hhcccCCCCCCCcc-C---CCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhccCCChhhHh
Q 019132 95 MAGMTRVPWGSLES-V---GDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQ 170 (345)
Q Consensus 95 ~~~m~~~nW~~~e~-V---gD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis~~gae 170 (345)
+..-.+.+...-+. . ...++-...++..|......+...+....+..|+-.+...|...++.++.|.+ ++..||=
T Consensus 555 L~~Qkk~Df~p~~~~~~~~~~~T~ac~~vv~~L~~~~~~~~~~l~~~nl~~f~~elg~~l~~~l~~h~kk~~-vs~~Gg~ 633 (710)
T PF07393_consen 555 LSEQKKTDFKPKEDDLSLDQQPTPACQEVVEFLERHCSLLKGSLDGSNLDVFLQELGERLHRLLLKHLKKFT-VSSTGGL 633 (710)
T ss_pred HhhcCCCCCCCCccccccccCCCHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHhCc-cCchhHH
Confidence 77555666664222 2 25888999999999999999999999888999999999999999999987654 8999999
Q ss_pred hHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhcCCchhHHHHHHhhC-CCCCHHHHHHHHhhc
Q 019132 171 QMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDSVADTYRALL-PEGTPMEFQRILELK 247 (345)
Q Consensus 171 QLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~sP~e~~ve~Y~~L~-~d~S~~~FqkIL~LK 247 (345)
+|.-|+.....++.++- .+.|...|+.|-.+..++..++|.+.+-..... +.-+..+....+.++
T Consensus 634 ~l~~Dl~~Y~~~~~~~~------------~~~v~~~F~~L~~l~nl~~v~~~~l~~~~~~~~~~~~~~~~i~~fi~~R 699 (710)
T PF07393_consen 634 QLIKDLNEYQDFIRSWG------------IPSVDEKFEALKELGNLFIVDPENLKELCREGQLGRFSPEEIYEFIQRR 699 (710)
T ss_pred HHHHHHHHHHHHHHHcC------------CchHHHHHHHHHHHHhheeecHHHHHHHHhhccccCCCHHHHHHHHHHh
Confidence 99999999999998873 367999999999999999999876655543332 223444444444443
No 11
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.99 E-value=0.28 Score=53.39 Aligned_cols=186 Identities=15% Similarity=0.174 Sum_probs=129.1
Q ss_pred hcccHHHHHHhHHHHHHHHHHhhhhhccCCcccchh--hhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCCCCCccCC
Q 019132 33 IVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEV--QDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVG 110 (345)
Q Consensus 33 IINTADYC~~Ti~qLeekl~e~id~~~kekIdf~~e--~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW~~~e~Vg 110 (345)
|+-+-+|...-..++.+-++....-+..+ .+.- .=.|..--+.+-..|...+..+++..+.-. +.+|...|..+
T Consensus 551 I~~n~~~fe~a~~~f~~~a~~~~~~~~~~---~e~~~~s~~l~~sr~~Ae~~l~~~i~~Kid~f~~l~-~~dW~t~e~pq 626 (800)
T KOG2176|consen 551 IAANLDYFEIAADFFLEFACHLNGIPNRD---AERPSSSTKLLASRKLAETELIELIKLKIDDFLELI-EYDWTTTEVPQ 626 (800)
T ss_pred HHHHHHHHHHhhHHHHHHHHHccCCcccc---ccccccchhhhhhhhhHHHHHHHHHhhhhHHHHHHh-hccccccccCC
Confidence 44445566666666666665554322111 1111 233444445555566666777777666554 99999999999
Q ss_pred CcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhc--cCCChhhHhhHHhhHHHHHHHHhhCCC
Q 019132 111 DQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKC--KHISETGAQQMLLDTQAVKTILLDIPS 188 (345)
Q Consensus 111 D~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~--kpis~~gaeQLLLD~~sLK~~Ll~LP~ 188 (345)
|.|.|+..+..-|...+.....+|+-.-....|-...+.+..++++.+..+ |.|++.+++|+.+|+..+..+--+=|.
T Consensus 627 ~~~~~i~e~~~yLet~~~s~~q~LP~~v~~~v~~~~~~his~~iv~llldd~ik~is~~Ai~~fnlDv~~lEsfa~~~p~ 706 (800)
T KOG2176|consen 627 GPSEYINEMLIYLETMFSSALQILPYKVAQLVCLRELDHISTSIVGLLLDDSIKQISMGAITNFNLDVNYLESFAASPPV 706 (800)
T ss_pred CccHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHccchhHHHHHHhccCCCC
Confidence 999999999999999999999999988888889899999999999999887 779999999999999999988877333
Q ss_pred CCCCCCCchhhHHHHHHhHHHHHHHhHHhcCC-chhHHHHHH
Q 019132 189 LGRQTSNAASYTKFVSREMSKAEALLKVILSP-VDSVADTYR 229 (345)
Q Consensus 189 ~~~~~~~~~sY~K~V~~~~~klE~lLKvL~sP-~e~~ve~Y~ 229 (345)
.+.+ .......|=.+..++-+|++. .|.|.+.|.
T Consensus 707 ~~~~-------~~~~~~~fielrQlinLL~~~~~e~y~~~~~ 741 (800)
T KOG2176|consen 707 PPNQ-------EGVLAKAFIELRQLINLLLLSDWETYLNDYG 741 (800)
T ss_pred CCcc-------cchhHHHHHHHHHHHHHHHhcCHHHhhCchh
Confidence 2221 112233344445777777755 455554443
No 12
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=95.59 E-value=1.1 Score=49.29 Aligned_cols=152 Identities=17% Similarity=0.236 Sum_probs=112.6
Q ss_pred CcccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccC-CCCCC--CccCC-----C----cCccHHHHHHHHhhhHHH
Q 019132 62 GVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTR-VPWGS--LESVG-----D----QSEYVNGINMILTSSIPV 129 (345)
Q Consensus 62 kIdf~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~-~nW~~--~e~Vg-----D----~S~YV~~i~~~L~~~~~~ 129 (345)
..-|......+..+...|.....+.+...+...+..+.+ ..|.. ....+ + ++.||++|-+.|-.--..
T Consensus 560 ~~ll~~~~~~~~~l~~~~~~~v~d~l~~~i~~~L~~vp~~~~W~~~~~~~~~~~~LP~FS~~P~eyIT~IGeyLLtLPq~ 639 (766)
T PF10191_consen 560 FSLLPEARAAVSRLNQQAQDLVFDVLFSPIRQQLKSVPSLPSWSSAGVGETSTLDLPSFSLSPQEYITQIGEYLLTLPQQ 639 (766)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCcccccCCccccccCCCCccccChHHHHHHHHHHHHhhHHh
Confidence 346888899999988888888888899999999999987 47886 21111 2 367888888877643333
Q ss_pred Hhhhcc----------------------------HHHHHHHHHHHHHHHHHHHHHHhHhccCCChhhHhhHHhhHHHHHH
Q 019132 130 LGSLLS----------------------------PIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKT 181 (345)
Q Consensus 130 i~~~L~----------------------------~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis~~gaeQLLLD~~sLK~ 181 (345)
+.+++. +..-..++++++......|.+.|.++..+++.|+.||..|+.=|.+
T Consensus 640 LEp~~~~~~~al~~Al~~~~~~~~~~~~~~~~~~~~~~~~wl~~va~~~~~~~~~~i~~i~~l~~~~~~QL~~Di~Yl~n 719 (766)
T PF10191_consen 640 LEPFAESDNSALAFALHAGKLPYPPESDEEAEEADDFADEWLGKVARATCALYLEQILEIPELSESGAKQLATDIDYLSN 719 (766)
T ss_pred hhhhhcCcchHHHHHHHhcCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHH
Confidence 322221 1456688999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhcCCchhHHHHHH
Q 019132 182 ILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDSVADTYR 229 (345)
Q Consensus 182 ~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~sP~e~~ve~Y~ 229 (345)
.|..|=... | ..+..+..+|.+|+|.|.+.-.
T Consensus 720 Vl~aLg~~~-----~-----------~~L~~~~~ll~~~~~~~~~~~~ 751 (766)
T PF10191_consen 720 VLSALGLSP-----P-----------PNLQQLVTLLKAPPDQYAQVAK 751 (766)
T ss_pred HHHHhCCCC-----C-----------HHHHHHHHHHcCCHHHHHHHHh
Confidence 998875311 1 1345667777888865554443
No 13
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.65 E-value=1.4 Score=48.59 Aligned_cols=186 Identities=16% Similarity=0.240 Sum_probs=134.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccC----CCCCCCccCCCcCccHHHHHHHHhhhHHHHhhhccHHHHH
Q 019132 65 MSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTR----VPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQ 140 (345)
Q Consensus 65 f~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~----~nW~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~ 140 (345)
+++.-|.|-.+..+|+-.|=-.+-.-|=..+....+ .-|+..+ .|+.-+-|..+.+.|...-.-+...|++.=++
T Consensus 775 ~ee~~~~fq~la~~cLLlLhlEVRv~Cfh~l~~~s~~~n~~i~~~~~-s~e~D~~V~aL~k~l~~~e~klk~~L~e~k~~ 853 (982)
T KOG3691|consen 775 YEELADSFQRLAFDCLLLLHLEVRVQCFHYLNPLSKLRNTSIVNRDV-SGEPDPSVVALNKDLSTTEEKLKACLNEWKRR 853 (982)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhccCCceeecccc-cCCCCHHHHHHHHHHHHHHHHHHhhcCHHHHH
Confidence 445678899999999877666666666666554433 3466544 67888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhccCCChhhHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhcCC
Q 019132 141 FFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSP 220 (345)
Q Consensus 141 ~fcDKlv~~fi~~f~~~I~k~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~sP 220 (345)
+..+=+...+-..+++.-..++.+++.|..||+-.+..|.+.|..+-.. + .-.|++.-++--++..-
T Consensus 854 yIFeGL~hL~s~~LI~~a~~i~~ln~~~ikkMcRNv~~lQQ~Lsnit~~-----------r--evdld~ar~fy~ll~nt 920 (982)
T KOG3691|consen 854 YIFEGLGHLVSSILISGAQYIERLNEGGIKKMCRNVSALQQILSNITES-----------R--EVDLDKARRFYELLQNT 920 (982)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccc-----------c--ccccHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999888762 2 44566666777777655
Q ss_pred chhHHHHHHhhCCCCCHHHHHHHHhh-----cCCC-HHHHHHHHHHHHhc
Q 019132 221 VDSVADTYRALLPEGTPMEFQRILEL-----KGLK-KADQQTILDDFNKH 264 (345)
Q Consensus 221 ~e~~ve~Y~~L~~d~S~~~FqkIL~L-----KGl~-k~eq~~lle~f~~~ 264 (345)
++.+.+....-=..-|.++...+|.+ ||+- +.-+..+++.+.+.
T Consensus 921 ~deile~v~d~~~qfse~e~~qllrls~rS~~g~~k~~~~~e~~qkl~n~ 970 (982)
T KOG3691|consen 921 ADEILEHVIDARKQFSEPELKQLLRLSYRSLKGDAKRNGRDELLQKLSNI 970 (982)
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHhhccccCCCchHHHHHHHHHH
Confidence 54444433322222445555555544 5543 34455555555443
No 14
>KOG2218 consensus ER to golgi transport protein/RAD50-interacting protein 1 [Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]
Probab=91.43 E-value=8.8 Score=41.94 Aligned_cols=155 Identities=18% Similarity=0.278 Sum_probs=105.5
Q ss_pred hhhcccHHHHHHhHHHHHHH---------HHHhhhhhc---cCCcc--cchhhhHHHHHHHHHHHHHHHHHhhhchHHhh
Q 019132 31 CYIVNSAEYCHKTSGDLAES---------VSKIIDSQL---ADGVD--MSEVQDEFSAVITKALVTLVLGLETKFDNEMA 96 (345)
Q Consensus 31 C~IINTADYC~~Ti~qLeek---------l~e~id~~~---kekId--f~~e~D~F~~visk~I~~LV~~le~~le~a~~ 96 (345)
|-++|.--|....+....+- +-+ .+... ....+ |.++.+....+.+.-+.-++..+-..+++..+
T Consensus 501 i~~~n~VNyvervl~ews~nv~fl~l~~a~~d-~~v~~l~e~~~~ns~F~~~~~~leel~~~~~~~~iv~~l~~~~~~~r 579 (737)
T KOG2218|consen 501 IAILNSVNYVERVLKEWSSNVVFLDLADAVED-EDVYMLHEATSGNSVFEEVSNFLEELMSTWMLKLIVHLLQNLKDLLR 579 (737)
T ss_pred HHhhhhHHHHHHHHHHHhcchhHHHHHHHhhc-ccccccccccccchhHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHH
Confidence 55666666877776644332 222 11110 11123 66666666666666677777777777899999
Q ss_pred cccCCCCCCCccCCCc-----CccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHH-HHHHhHhccCCChhhHh
Q 019132 97 GMTRVPWGSLESVGDQ-----SEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPR-FYANIFKCKHISETGAQ 170 (345)
Q Consensus 97 ~m~~~nW~~~e~VgD~-----S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~-f~~~I~k~kpis~~gae 170 (345)
+..+.+|.+.+.-... |+=+......|+.....+...+++.-|..+..-++..+..- |...|++....+.-|++
T Consensus 580 ~y~k~~w~s~~~~~~~~~~svS~~iv~~ld~Lr~~l~~l~~~l~~~~fs~~~~~l~~~idv~~~~e~il~~~~f~~~~~~ 659 (737)
T KOG2218|consen 580 NYKKNKWVSLEESENIGPLSVSREIVNLLDGLRRHLDDLEENLNPLDFSAIWRNLQENIDVYVFEEIILKNHKFESSGLF 659 (737)
T ss_pred hhhhcchhcccchhhcccchHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHhhhhHHHHHHHHHhhhhcCchHHH
Confidence 9999999877652211 45566666777778888888888777777776665555444 44555676889999999
Q ss_pred hHHhhHHHHHHHHhhC
Q 019132 171 QMLLDTQAVKTILLDI 186 (345)
Q Consensus 171 QLLLD~~sLK~~Ll~L 186 (345)
|+..|+..|...|..+
T Consensus 660 ~f~~Da~~L~~~fs~y 675 (737)
T KOG2218|consen 660 QFVHDAKRLLEVFSEY 675 (737)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999999665
No 15
>PF14923 CCDC142: Coiled-coil protein 142
Probab=91.16 E-value=11 Score=39.15 Aligned_cols=115 Identities=18% Similarity=0.123 Sum_probs=78.6
Q ss_pred CCCCCCccC---CCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhcc-CCChhhHhhHHhhH
Q 019132 101 VPWGSLESV---GDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCK-HISETGAQQMLLDT 176 (345)
Q Consensus 101 ~nW~~~e~V---gD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~k-pis~~gaeQLLLD~ 176 (345)
.-|...-.. ...|.||....+.+-.-+-.--..+++.+=---..-.+..|+-.-++.|++=| +.|..||.||+-|.
T Consensus 260 ~~WR~~~~~~lP~~pS~Yv~~~v~~vl~PVl~g~q~L~~~aq~~~l~~~l~a~~eAWLdhIl~~kIKFS~~GAlQL~~DF 339 (450)
T PF14923_consen 260 RYWRRSLSPELPSAPSEYVEYVVETVLEPVLQGVQGLPPEAQIPALSQALTAMLEAWLDHILMHKIKFSLQGALQLRQDF 339 (450)
T ss_pred chhcccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHccceeeHHHHHHHHHHH
Confidence 568643222 36799999988877433333233556666666666678888888899998763 48999999999999
Q ss_pred HHHHHHHhh-CCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhcC
Q 019132 177 QAVKTILLD-IPSLGRQTSNAASYTKFVSREMSKAEALLKVILS 219 (345)
Q Consensus 177 ~sLK~~Ll~-LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~s 219 (345)
..++..+.+ --.+.++. +=+=.-..-|.++|..+++|+-
T Consensus 340 ~~Vr~wl~~e~~~Ls~e~----rq~Ll~l~v~r~~dgv~~lLlq 379 (450)
T PF14923_consen 340 GYVRDWLESECSGLSPEL----RQTLLSLEVFRRCDGVGLLLLQ 379 (450)
T ss_pred HHHHHHHHhhhccCCHHH----HHHHhccHHHHHHHHHHHHHhc
Confidence 999999977 44432211 1111224567899999999874
No 16
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.82 E-value=25 Score=37.68 Aligned_cols=154 Identities=14% Similarity=0.104 Sum_probs=81.5
Q ss_pred ccHHHHHHhHHHHHHHHHHhhhhhccC-----CcccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccC----CCCCC
Q 019132 35 NSAEYCHKTSGDLAESVSKIIDSQLAD-----GVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTR----VPWGS 105 (345)
Q Consensus 35 NTADYC~~Ti~qLeekl~e~id~~~ke-----kIdf~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~----~nW~~ 105 (345)
.+.+-..+-.+.|-+-|..++...-+. .+.++.-.+.+..+.-.--+.||..+...|..-++...- ..|.+
T Consensus 485 dd~~llqevl~elle~I~~kl~~~~k~~sdv~a~sle~~g~Sl~a~lp~i~ktIIe~lsd~~~~~lrqv~dvprlyR~Tn 564 (705)
T KOG2307|consen 485 DDGNLLQEVLPELLESIWGKLHDITKVFSDVFAQSLEKHGRSLDALLPQIDKTIIEMLSDVCHQELRQVSDVPRLYRWTN 564 (705)
T ss_pred ccchHHHHHhHHHHHHHHhhccchhhhhHHHHHHHHHHhcccHHHHhhhHHHHHHHHHHHHHHHHHHHHhccHHHHHhcc
Confidence 455555666666666666665322100 012222333333333333344555555555555555444 46887
Q ss_pred CccCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHH--------------HHHHHhHhccCCChh----
Q 019132 106 LESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGP--------------RFYANIFKCKHISET---- 167 (345)
Q Consensus 106 ~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~--------------~f~~~I~k~kpis~~---- 167 (345)
-+-..-.|+||.++.+-+.....-...-|.......++.+++..+.. +=-.++-|+|.....
T Consensus 565 KevPtthSsYVv~aLrpvkal~eg~k~~L~q~~~eeil~gv~seit~~yye~vsDVl~sv~ktesSL~Rlkq~~~~~~g~ 644 (705)
T KOG2307|consen 565 KEVPTTHSSYVVTALRPVKALKEGLKCELEQPHTEEILRGVNSEITNYYYEKVSDVLDSVEKTESSLSRLKQKTTTDSGS 644 (705)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 77788999999998877765433332223222333333333333333 333455555433221
Q ss_pred -------------hHhhHHhhHHHHHHHHhhCCC
Q 019132 168 -------------GAQQMLLDTQAVKTILLDIPS 188 (345)
Q Consensus 168 -------------gaeQLLLD~~sLK~~Ll~LP~ 188 (345)
..+||.+|++..-..+-+|--
T Consensus 645 s~gss~~vSddDKir~QL~lDv~~~~s~~~kL~f 678 (705)
T KOG2307|consen 645 SGGSSQTVSDDDKIRQQLYLDVKYFLSYAEKLVF 678 (705)
T ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHHHHHhcc
Confidence 568899999888877766644
No 17
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=83.80 E-value=5.3 Score=34.12 Aligned_cols=75 Identities=21% Similarity=0.263 Sum_probs=57.2
Q ss_pred CCCCccCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhccCCChhhHhhHHhhHHHHHHH
Q 019132 103 WGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTI 182 (345)
Q Consensus 103 W~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis~~gaeQLLLD~~sLK~~ 182 (345)
|.+-+.....|.||..|..=|.++.......+.+.-...++.++++.+..+|++.+ ..+|-.+.-....
T Consensus 24 ~Tnk~~Pt~~S~yV~~il~Pl~~F~~~~~~~~~~~~~~~~~~~v~~~v~~~y~~~~-----------~evL~sv~KtEeS 92 (125)
T PF12022_consen 24 MTNKPVPTKPSPYVSSILRPLKSFLEEYSSYLSPEIIEEWLQKVITEVTERYYEIA-----------SEVLTSVRKTEES 92 (125)
T ss_pred ccCCCCCCCccHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 54445677899999999999999999998888888899999999999999988764 3444444445555
Q ss_pred HhhCCC
Q 019132 183 LLDIPS 188 (345)
Q Consensus 183 Ll~LP~ 188 (345)
|..|..
T Consensus 93 L~rlkk 98 (125)
T PF12022_consen 93 LKRLKK 98 (125)
T ss_pred HHHHHH
Confidence 555443
No 18
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.73 E-value=20 Score=40.06 Aligned_cols=158 Identities=14% Similarity=0.190 Sum_probs=85.3
Q ss_pred hhhhhhhcccHHHHHHhHHHHHHHHHHhhhhhccCCcccc-hhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCCCC
Q 019132 27 ERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMS-EVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGS 105 (345)
Q Consensus 27 ~k~~C~IINTADYC~~Ti~qLeekl~e~id~~~kekIdf~-~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW~~ 105 (345)
-+++|++=|=+.+|...-..|-+..+-.-.-+.+.--+++ .-...+..+..+=|.....-+-..++|.+- +...+|..
T Consensus 719 qrlLi~LsN~~yc~~~~~~~l~n~fk~~~~~~~k~iE~is~s~s~l~s~l~e~Yi~~k~~~i~~alEp~~~-~~~~~W~~ 797 (934)
T KOG2347|consen 719 QRLLIVLSNIGYCKDILAPTLLNIFKYTWLLSRKNIEDISMSLSGLGSKLFENYIEDKADPIRGALEPYLL-DGGIQWGM 797 (934)
T ss_pred heeEEEeccHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhh-cccccccc
Confidence 3455655565544444555666666333222222211222 112222223223333333333333334321 46689998
Q ss_pred CccCCCcCccHHHHHHHHh-hhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhc--cCCChhhHhhHHhhHHHHHHH
Q 019132 106 LESVGDQSEYVNGINMILT-SSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKC--KHISETGAQQMLLDTQAVKTI 182 (345)
Q Consensus 106 ~e~VgD~S~YV~~i~~~L~-~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~--kpis~~gaeQLLLD~~sLK~~ 182 (345)
.-.+++-++|...+..+|- .+..++. +.+......+.++++.+.-.|. .+++| ..++..|+=|+.+|+..+.+.
T Consensus 798 ~~~~~~irdYa~E~l~~lV~VhaEvf~--iap~Ll~kiL~~~ve~i~d~L~-~l~~~~v~s~S~nG~lQi~vdl~~l~~~ 874 (934)
T KOG2347|consen 798 APPVKGIRDYAKEALHNLVAVHAEVFA--IAPQLLDKILGETVEGISDELL-RLFSCDVQSFSANGALQIMVDLEYLEDV 874 (934)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHH-HHhhhhhhccCCCcceeeeeeHHHHHHH
Confidence 8889999999988765542 2333322 2344444444444444333333 33555 778999999999999999999
Q ss_pred HhhCCC
Q 019132 183 LLDIPS 188 (345)
Q Consensus 183 Ll~LP~ 188 (345)
|.-+-.
T Consensus 875 l~~Ylt 880 (934)
T KOG2347|consen 875 LGPYLT 880 (934)
T ss_pred HHHhcc
Confidence 865544
No 19
>KOG3745 consensus Exocyst subunit - Sec10p [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.87 E-value=2.5e+02 Score=31.23 Aligned_cols=147 Identities=15% Similarity=0.171 Sum_probs=102.3
Q ss_pred hhhchHHhhcccCCCCCCCccC---CCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhccCC
Q 019132 88 ETKFDNEMAGMTRVPWGSLESV---GDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHI 164 (345)
Q Consensus 88 e~~le~a~~~m~~~nW~~~e~V---gD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~kpi 164 (345)
...++..+..-.+.+-...++. ...+.-...+++.+..++..+...+....+..|.-.+...+..-.+..+.+|+ +
T Consensus 596 i~~~~~il~~~qkk~df~p~s~~s~~~~~~pa~~vVq~L~~~~~~l~~~~dg~nLd~~~~eig~rlf~~l~~hl~~~~-~ 674 (763)
T KOG3745|consen 596 IGHVKFILSTEQKKTDFKPDSINSLTRDIEPAIRVVQFLGNHIEQLKGRLDGENLDVFLQEIGTRLFRLLLSHLQQFK-V 674 (763)
T ss_pred HHHHHHHhcccccccccCCcccCcchhhhHHHHHHHHHHHHHHHHHHcccCCchHHHHHHHHHHHHHHHHHHHHHHhe-e
Confidence 3344455554444333322222 23344477788888888988888888888888888888888888888888887 8
Q ss_pred ChhhHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhcCCchhHHHHHH-hhCCCCCHHHHHHH
Q 019132 165 SETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDSVADTYR-ALLPEGTPMEFQRI 243 (345)
Q Consensus 165 s~~gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~sP~e~~ve~Y~-~L~~d~S~~~FqkI 243 (345)
+..||=-++-|+-...+++.++-. ..|...|.-|..+.-+++..++..-+.-. .+.+.-+..+..-+
T Consensus 675 s~~Gal~licDvn~y~~~i~~~~~------------~~vl~~F~tL~~L~nLliV~pd~l~ev~k~~~la~f~~~~I~ef 742 (763)
T KOG3745|consen 675 STAGALLLICDVNEYRTFIHSLGQ------------PSVLPYFKTLKALANLLIVKPDNLEEVGKGKFLANFDREEIHEF 742 (763)
T ss_pred ccccceeeeccHHHHHHHHHHhCc------------ccHHHHHHHHHHHHHHHeeChhhHHHHhchhhhccccHHHHHHH
Confidence 899999999999999999998764 45777888889999999887654444332 22222333444555
Q ss_pred Hhhc
Q 019132 244 LELK 247 (345)
Q Consensus 244 L~LK 247 (345)
+.++
T Consensus 743 v~lR 746 (763)
T KOG3745|consen 743 VQLR 746 (763)
T ss_pred HHHh
Confidence 5554
No 20
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=59.45 E-value=1e+02 Score=29.12 Aligned_cols=87 Identities=25% Similarity=0.342 Sum_probs=53.5
Q ss_pred HHHHhhhHHHHhhhcc---HHHHHHHHHHHHHHHHHHHHHHhHhccCCChhhHhhHHhhHHHHHHHHhhCCCCCC-CCCC
Q 019132 120 NMILTSSIPVLGSLLS---PIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGR-QTSN 195 (345)
Q Consensus 120 ~~~L~~~~~~i~~~L~---~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~-~~~~ 195 (345)
...++..-|.+..+|+ ..-+..|+...++. ++.....+|+|- |.+ ++|...+-..+....=... -.+.
T Consensus 18 a~~l~~~~p~l~~lLp~~~~~~l~~Fy~~tv~~-v~dLr~~iy~~~------a~~-~l~~~~i~~~Ia~vKWdvkev~~q 89 (234)
T PF10474_consen 18 ARQLESLRPYLESLLPPNKRDFLEQFYSQTVSA-VPDLREPIYKCV------ASR-LLDLEQILNSIANVKWDVKEVMSQ 89 (234)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHH-HHHHHHHHHHHH------HHH-HcCHHHHHHHHHHcCCCCCCCCCc
Confidence 3344444555555552 45677788777744 688888888762 233 3566655555544431111 1244
Q ss_pred chhhHHHHHHhHHHHHHHh
Q 019132 196 AASYTKFVSREMSKAEALL 214 (345)
Q Consensus 196 ~~sY~K~V~~~~~klE~lL 214 (345)
+.+|...+.++|+.+..-|
T Consensus 90 hs~YVd~l~~~~~~f~~rL 108 (234)
T PF10474_consen 90 HSSYVDQLVQEFQQFSERL 108 (234)
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 6789999999999877666
No 21
>PF10548 P22_AR_C: P22AR C-terminal domain; InterPro: IPR018876 This entry represents the carboxy-terminal domain of the Enterobacteria phage P22 antirepressor ((P03037 from SWISSPROT) []. It is found associated with IPR018875 from INTERPRO.
Probab=59.41 E-value=28 Score=27.23 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=48.9
Q ss_pred cccCCccchhhhhhhcccHHHHHHhHHHHHHHHHHhhhhhccCCcccchhhhHHHHHHHHHHHHHHH
Q 019132 19 QLLISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVL 85 (345)
Q Consensus 19 ~~~~~~e~~k~~C~IINTADYC~~Ti~qLeekl~e~id~~~kekIdf~~e~D~F~~visk~I~~LV~ 85 (345)
+..++++|+..+|-+-.-++.|.++++.|+.-|+.. .++|..++ =+.--.|...++++-.+|.+
T Consensus 5 t~~fTe~El~~L~Wlw~~~~~m~~~~~~l~p~L~~l-gS~~a~~~--ys~a~Ey~~~~~~~r~iL~R 68 (74)
T PF10548_consen 5 TFQFTEEELQSLVWLWFAAERMRELCQELYPALKAL-GSNYAGKV--YSIAYEYRRTLERARKILKR 68 (74)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCcCccc--cchHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999998765 56667764 33345566666666555554
No 22
>PF10540 Membr_traf_MHD: Munc13 (mammalian uncoordinated) homology domain; InterPro: IPR019558 Mammalian uncoordinated homology 13 (Munc13) proteins constitute a family of three highly homologous molecules (Munc13-1, Munc13-2 and Munc13-3) with homology to Caenorhabditis elegans unc-13p. Munc13 proteins contain a phorbol ester-binding C1 domain and two C2 domains, which are Ca2+/phospholipid binding domains. Sequence analyses have uncovered two regions called Munc13 homology domains 1 (MHD1) and 2 (MHD2) that are arranged between two flanking C2 domains. MHD1 and MHD2 domains are present in a wide variety of proteins from Arabidopsis thaliana (Mouse-ear cress), C. elegans, Drosophila melanogaster (Fruit fly), Mus musculus (Mouse), Rattus norvegicus (Rat) and Homo sapiens (Human), some of which may function in a Munc13-like manner to regulate membrane trafficking. The MHD1 and MHD2 domains are predicted to be alpha-helical. ; PDB: 3SWH_A.
Probab=56.05 E-value=1.3e+02 Score=25.87 Aligned_cols=105 Identities=13% Similarity=0.160 Sum_probs=62.2
Q ss_pred HHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHh---------------------------HhccCCChhh
Q 019132 116 VNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANI---------------------------FKCKHISETG 168 (345)
Q Consensus 116 V~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I---------------------------~k~kpis~~g 168 (345)
+.-+...|..+..++...+.+.-|.....++-..++..+-..+ ..-||+++.-
T Consensus 4 i~PL~dyLd~nL~~L~~~L~~~~f~~vl~~lW~~vl~~l~~llvlP~ls~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~q 83 (137)
T PF10540_consen 4 IEPLMDYLDSNLSILASNLEKENFKRVLKELWKVVLETLEELLVLPPLSDKPMLGLLQSAVSSLSSHGIGGSQRPLTPKQ 83 (137)
T ss_dssp HHHHHHHHCHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHTTS-G------------GG-TTS-------------TC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHhhcccccCCCCCHHH
Confidence 3445667777888888888877788888888888888777777 3457777777
Q ss_pred HhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHH--HHhHHHHHHHhHHhcCCchhHHHHH
Q 019132 169 AQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFV--SREMSKAEALLKVILSPVDSVADTY 228 (345)
Q Consensus 169 aeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~K~V--~~~~~klE~lLKvL~sP~e~~ve~Y 228 (345)
.+-+-.-.+.|+.+|.. +++. .| ...+ +.++..++.++..=..+.+.+++.|
T Consensus 84 ~~~l~~~L~~L~~FFhA----~G~G-l~---~~~L~ks~~yq~L~~~l~ly~~sT~~LI~~f 137 (137)
T PF10540_consen 84 CDRLFKWLDTLKDFFHA----EGNG-LP---LEFLEKSPEYQSLRYILSLYDQSTDELIEEF 137 (137)
T ss_dssp HHHHHHHHHHHHHHHHC----CCTS------HHHHHC-HHHHHHHHHHHHT-----------
T ss_pred HHHHHHHHHHHHHHHhC----CCCC-CC---HHHHccCHHHHHHHHHHHHhcCCHHHHHhhC
Confidence 88888888899999976 2222 22 3455 6777888888888888877777765
No 23
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=54.60 E-value=13 Score=38.48 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=18.3
Q ss_pred ccchHHHHHHHHHhcCC-CCchhhHHH
Q 019132 299 ITSREDVLTRAAALGRG-AATTGFKRF 324 (345)
Q Consensus 299 ~~~~~~~~~~~~~~~~~-~~~~~~~~~ 324 (345)
-++.-.|-+--|.|..| .+|-|+||.
T Consensus 258 ~~~k~~~~AlFaqlNqGe~iTsgLkkV 284 (480)
T KOG2675|consen 258 DANKGGRGALFAQLNQGEGITSGLKKV 284 (480)
T ss_pred ccccccHHHHHHHHhccchhhhhhhhC
Confidence 34444677778888889 777777763
No 24
>KOG4182 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.97 E-value=29 Score=36.70 Aligned_cols=71 Identities=18% Similarity=0.248 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhccCCChhhHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHh
Q 019132 138 YFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVI 217 (345)
Q Consensus 138 Y~~~fcDKlv~~fi~~f~~~I~k~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL 217 (345)
+..-+.-|+++..+.-|.+.|..++.|+.-||+||-+|++-|.+.|..|--.. .| .+-.++..|
T Consensus 748 fatewmfkVaEga~aLYmdQi~gIk~i~dr~AqQLSVDIEYLSNVLeaL~lpI----~~------------~Laqf~TcL 811 (828)
T KOG4182|consen 748 FATEWMFKVAEGACALYMDQILGIKSIPDRAAQQLSVDIEYLSNVLEALGLPI----NL------------QLAQFLTCL 811 (828)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcccccCchhhhhhhhhHHHHHHHHHHhCCCC----Ch------------HHHHHHHHH
Confidence 44455669999999999999999999999999999999999999987764311 11 234566677
Q ss_pred cCCchhH
Q 019132 218 LSPVDSV 224 (345)
Q Consensus 218 ~sP~e~~ 224 (345)
.+|++.+
T Consensus 812 aa~~~el 818 (828)
T KOG4182|consen 812 AAAPDEL 818 (828)
T ss_pred hcCcHHH
Confidence 7777543
No 25
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.45 E-value=36 Score=37.68 Aligned_cols=149 Identities=9% Similarity=0.089 Sum_probs=87.0
Q ss_pred hhhhhcccHHHHHHhHHHHHHHHHHhhhhhccCCc-ccch--hhhHHHHHHHHHHHHHHHHHhhhchHH--------hhc
Q 019132 29 VICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGV-DMSE--VQDEFSAVITKALVTLVLGLETKFDNE--------MAG 97 (345)
Q Consensus 29 ~~C~IINTADYC~~Ti~qLeekl~e~id~~~kekI-df~~--e~D~F~~visk~I~~LV~~le~~le~a--------~~~ 97 (345)
+.-+|-|..++|+.++.++-.-+-++++..+.+++ +.++ ..+...+++..+++.+++++-.+.... +|-
T Consensus 525 LmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri 604 (859)
T KOG1241|consen 525 LMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRI 604 (859)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHH
Confidence 34579999999999999998888888887766544 3332 234456778888999888776554432 333
Q ss_pred ccCCCCC--CCccCCCcCccHHHHHHHHhhhHHHHhhhccH---HHHHHHHHHHHHHHHHHHHHHh-HhccCCChhhHhh
Q 019132 98 MTRVPWG--SLESVGDQSEYVNGINMILTSSIPVLGSLLSP---IYFQFFLDKLASSLGPRFYANI-FKCKHISETGAQQ 171 (345)
Q Consensus 98 m~~~nW~--~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~---~Y~~~fcDKlv~~fi~~f~~~I-~k~kpis~~gaeQ 171 (345)
|....=+ +-|.-+--|..+..+-.-+.+|++.+.++|.. ++-.++.--.+--++...-+++ -+..|..+.--.+
T Consensus 605 ~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~ 684 (859)
T KOG1241|consen 605 FESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTV 684 (859)
T ss_pred HcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 3331110 00111223445555666677788888887742 3333333333334444444444 3345665555555
Q ss_pred HHhhHH
Q 019132 172 MLLDTQ 177 (345)
Q Consensus 172 LLLD~~ 177 (345)
|+.|++
T Consensus 685 Lvq~Ls 690 (859)
T KOG1241|consen 685 LVQCLS 690 (859)
T ss_pred HHHHcc
Confidence 555443
No 26
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=50.09 E-value=2.2e+02 Score=26.69 Aligned_cols=136 Identities=17% Similarity=0.191 Sum_probs=72.5
Q ss_pred hhhHHHHHHHHHhcccccc--------cCCccchhh--hhhhc--ccHHHHHHhHHHHHHHHHHhhhhhccCCc-----c
Q 019132 2 QQSFLQDYQEVVQGLLQQL--------LISERDERV--ICYIV--NSAEYCHKTSGDLAESVSKIIDSQLADGV-----D 64 (345)
Q Consensus 2 ~~~~l~~y~~~i~~~~~~~--------~~~~e~~k~--~C~II--NTADYC~~Ti~qLeekl~e~id~~~kekI-----d 64 (345)
||.||.+|++.|-..-|.+ .+...-+-. +-+.- |..+=....+.+|...+..++... .+.+ .
T Consensus 47 Q~q~l~~Y~~~lr~~lP~~~~~a~d~l~la~~ald~V~~~~~g~~~~~~~l~~l~~~l~~~~~~~~~~~-~d~~~l~~~~ 125 (229)
T PF11101_consen 47 QQQALQQYQQGLRQQLPWVVQLASDGLELARDALDEVATSLLGDSNARDRLKQLMDQLKQQVDRRFYQR-GDGFVLHAQA 125 (229)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHheeC-CCcEEEcHHH
Confidence 8999999999886433332 222222211 12222 333334444455555555554311 0111 4
Q ss_pred cchhhhHHHHHHHHHHHHHHHH-HhhhchHHhhcccCCCCCCCccCCCcCccHHHHHHHHhhhHHHHhhhcc------HH
Q 019132 65 MSEVQDEFSAVITKALVTLVLG-LETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLS------PI 137 (345)
Q Consensus 65 f~~e~D~F~~visk~I~~LV~~-le~~le~a~~~m~~~nW~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~------~~ 137 (345)
|++..+.|..-+.+.++.+|.. +..-+.....+|. ++ -|| .=+..+...+...-..|..-+. +.
T Consensus 126 ~~~~~~~~~~e~e~~~e~lv~~s~g~i~~~l~~~m~---~~----~G~--~~l~~~~~~m~~l~~~ie~~~~~q~~~le~ 196 (229)
T PF11101_consen 126 FSQLDEFFDQEFEQAIEQLVQESMGSILQALGNEMG---SS----EGD--QNLQAFEQRMEGLQQQIEQEMEAQAQELEQ 196 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cc----CCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667788888888999988885 4444444445554 22 233 3455666666555555555441 34
Q ss_pred HHHHHHHHHH
Q 019132 138 YFQFFLDKLA 147 (345)
Q Consensus 138 Y~~~fcDKlv 147 (345)
--..||+++.
T Consensus 197 ~a~~lC~~l~ 206 (229)
T PF11101_consen 197 KAQALCDSLQ 206 (229)
T ss_pred HHHHHHHHHH
Confidence 4455666654
No 27
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.85 E-value=2.1e+02 Score=31.53 Aligned_cols=160 Identities=14% Similarity=0.052 Sum_probs=91.8
Q ss_pred cchhhhhhhcccHHHHHHhHHH-HHHHHHHhhhhhccCCcccchhh---------hHHHHHHH-H--------HHHHHHH
Q 019132 25 RDERVICYIVNSAEYCHKTSGD-LAESVSKIIDSQLADGVDMSEVQ---------DEFSAVIT-K--------ALVTLVL 85 (345)
Q Consensus 25 e~~k~~C~IINTADYC~~Ti~q-Leekl~e~id~~~kekIdf~~e~---------D~F~~vis-k--------~I~~LV~ 85 (345)
.+.+++-.|.|-+.||....-+ +|-.++.--|+.--..++++... -.|++-++ . ++..|..
T Consensus 480 ~d~rlTlavs~~~ak~i~~l~~kae~qistg~D~rQvigp~ts~q~rnv~l~n~l~kyhdsvr~~aI~~s~e~avlpl~t 559 (797)
T KOG2211|consen 480 RDVRLTLAVSQIAAKVIDSLILKAELQISTGSDERQVIGPDTSRQLRNVRLMNWLSKYHDSVRLLAIFGSDEDAVLPLET 559 (797)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccCCchHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhHHHH
Confidence 3456667778888888765443 33333333333322223444333 23444444 2 2222222
Q ss_pred HHhhhchHHhhcccCCCCC----C--CccCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHH------HHHHHHHHHH
Q 019132 86 GLETKFDNEMAGMTRVPWG----S--LESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFL------DKLASSLGPR 153 (345)
Q Consensus 86 ~le~~le~a~~~m~~~nW~----~--~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fc------DKlv~~fi~~ 153 (345)
.+-..++..+-.|...+.. + ......-|-||..+...+......+-..+.+.-+..=| .-.+..++.-
T Consensus 560 ~~~dilesiI~tis~~~ls~~~lss~~~pd~~~s~YmeelQ~fVlrf~s~~~s~f~~s~~~~~~~~~~~t~~~akr~vef 639 (797)
T KOG2211|consen 560 VKKDILESIIVTISPSELSLPNLSSKWTPDEYVSWYMEELQLFVLRFLSGLVSSFNSSVISRGQQHYVDTYPRAKRIVEF 639 (797)
T ss_pred HHHHHHHHHHhhcCHhhcCCcccccccCCCcchhHHHHHHHHHHHHHHHHHHHhccHHHhhcccccchhhHHHHHHHHHH
Confidence 3344455555555443333 0 01223457788877766655555544444333333223 5678888999
Q ss_pred HHHHhHhccCCChhhHhhHHhhHHHHHHHHh
Q 019132 154 FYANIFKCKHISETGAQQMLLDTQAVKTILL 184 (345)
Q Consensus 154 f~~~I~k~kpis~~gaeQLLLD~~sLK~~Ll 184 (345)
|+.++-..+|+++.|-.+|--|+..++..+-
T Consensus 640 firhasl~rplse~gkmRlaqD~aemElaVg 670 (797)
T KOG2211|consen 640 FIRHASLERPLSELGKMRLAQDIAEMELAVG 670 (797)
T ss_pred hhhhhhhcCchhhhhhhhHHHHhHHHHHhhC
Confidence 9999999999999999999999999887764
No 28
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism]
Probab=41.28 E-value=82 Score=34.71 Aligned_cols=73 Identities=25% Similarity=0.350 Sum_probs=61.6
Q ss_pred CcCccHHHHHHHHhhhHHHHhh-hccHHHHHHHHHHHHHHHHHHHHHHh-HhccCCChhhHhhHHhhHHHHHHHH
Q 019132 111 DQSEYVNGINMILTSSIPVLGS-LLSPIYFQFFLDKLASSLGPRFYANI-FKCKHISETGAQQMLLDTQAVKTIL 183 (345)
Q Consensus 111 D~S~YV~~i~~~L~~~~~~i~~-~L~~~Y~~~fcDKlv~~fi~~f~~~I-~k~kpis~~gaeQLLLD~~sLK~~L 183 (345)
-.|-||.+...-+.+.+..+.. .|+++-++-|...++..++..|-+-. -+|-++++-+|=||++|+.=+...|
T Consensus 642 qPslyiqSfL~rl~qeInrvggh~Lp~~vLQ~f~~sl~~k~~~~YE~l~~a~~~kasqn~aLQll~DLrfl~~Vl 716 (863)
T KOG2033|consen 642 QPSLYIQSFLQRLHQEINRVGGHTLPPKVLQAFIQSLIGKLLCHYEGLAHAECTKASQNIALQLLFDLRFLERVL 716 (863)
T ss_pred CccHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3567999988888888887776 55899999999999999999987766 6775688999999999998888777
No 29
>PF10909 DUF2682: Protein of unknown function (DUF2682); InterPro: IPR024322 The function of these viral proteins is not known.
Probab=40.45 E-value=61 Score=25.73 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhhhhccCCcccchhhhHHH---HHHHHHHHHHHHHH
Q 019132 45 GDLAESVSKIIDSQLADGVDMSEVQDEFS---AVITKALVTLVLGL 87 (345)
Q Consensus 45 ~qLeekl~e~id~~~kekIdf~~e~D~F~---~visk~I~~LV~~l 87 (345)
.+||+++-+++-.. ..|.|++++..+. .-++.||..+++-+
T Consensus 28 ~~lE~~Ltkll~~~--naI~Fd~~~~~l~~Lk~Ni~nCiNi~IdLI 71 (77)
T PF10909_consen 28 DDLEERLTKLLIRA--NAIVFDPEQSNLKFLKNNISNCINILIDLI 71 (77)
T ss_pred hhHHHHHHHHHHHh--cceeeCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 58999999998765 6788998776664 44667888887754
No 30
>cd08816 CARD_RIG-I_1 Caspase activation and recruitment domain found in RIG-I, first repeat. Caspase activation and recruitment domain (CARD) found in RIG-I (Retinoic acid Inducible Gene I, also known as Ddx58), first repeat. RIG-I is a cytoplasmic RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. RIG-I contains two N-terminal CARD domains and a C-terminal RNA helicase. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I recognizes different sets of viruses compared to MDA5, a related RNA helicase. RIG-I associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction doma
Probab=38.77 E-value=96 Score=25.25 Aligned_cols=54 Identities=22% Similarity=0.228 Sum_probs=38.3
Q ss_pred HHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhccCCChhhHhhHHhhH
Q 019132 120 NMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDT 176 (345)
Q Consensus 120 ~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis~~gaeQLLLD~ 176 (345)
+..|.-+.+.|+.+|+|.|.--| ++..|=..-.+.|..=+.-++..|-|++||.
T Consensus 5 k~nL~af~~yi~ktl~P~yIl~~---m~~~~~~e~v~~I~aEe~kg~~~AaqlfL~~ 58 (89)
T cd08816 5 KRNLQRFRDYIKKILRPSYILGF---MTTWLEDEEVERILSEEEKGVTSAAQLFLDY 58 (89)
T ss_pred HHHHHHHHHHHHHhhchHHHHHH---HHHhcCHHHHHHHHHHhccChHHHHHHHHHH
Confidence 45667777888888999887665 3444455556666666667788888888874
No 31
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=37.59 E-value=97 Score=24.69 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=35.1
Q ss_pred hHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhc
Q 019132 168 GAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVIL 218 (345)
Q Consensus 168 gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~ 218 (345)
..++|.+|++.|+.+|..--. .+....++.+..+||.=|+-+.
T Consensus 4 ~i~eL~~Dl~El~~Ll~~a~R--------~rVk~~L~~ei~klE~eI~~~~ 46 (79)
T PF09032_consen 4 QIEELQLDLEELKSLLEQAKR--------KRVKDLLTNEIRKLETEIKKLK 46 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT--------CCHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHhhH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999966554 3567889999999999887764
No 32
>PF14980 TIP39: TIP39 peptide
Probab=33.95 E-value=29 Score=25.14 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHHh
Q 019132 2 QQSFLQDYQEVVQ 14 (345)
Q Consensus 2 ~~~~l~~y~~~i~ 14 (345)
.|+||++|-.+++
T Consensus 35 R~~WLnSYMqkLL 47 (51)
T PF14980_consen 35 RQKWLNSYMQKLL 47 (51)
T ss_pred HHHHHHHHHHHHH
Confidence 3799999999865
No 33
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=33.23 E-value=4.1e+02 Score=24.90 Aligned_cols=48 Identities=6% Similarity=0.053 Sum_probs=31.5
Q ss_pred ccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 019132 114 EYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKC 161 (345)
Q Consensus 114 ~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~ 161 (345)
.++..+...|++..++=-..+...-+.+|--+-.+......+++|..+
T Consensus 13 ~~l~~v~~~iK~~~pf~t~lFd~~~~~~~s~q~~ee~F~~l~~sV~~m 60 (205)
T PF12238_consen 13 KALKKVLDLIKENPPFKTSLFDETVLSNLSGQSDEEKFKSLFDSVPLM 60 (205)
T ss_pred HHHHHHHHHHccCCCCchhhhhHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 355666666666666655556666677777777777777777776544
No 34
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=31.61 E-value=1.6e+02 Score=31.52 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=19.1
Q ss_pred HHHHHHHHhhcCCCH-------HHHHHHHHHHHhcCC
Q 019132 237 PMEFQRILELKGLKK-------ADQQTILDDFNKHGP 266 (345)
Q Consensus 237 ~~~FqkIL~LKGl~k-------~eq~~lle~f~~~~~ 266 (345)
..+|..|+.=|+-.. .++..-|+.|..--+
T Consensus 223 ~tElKeii~nK~YtG~~~~~n~~~Vk~ALq~YqELLP 259 (574)
T PF07462_consen 223 FTELKEIIKNKKYTGNDHAKNIAEVKEALQAYQELLP 259 (574)
T ss_pred HHHHHHHHhcCCCCCCChhhhHHHHHHHHHHHHHhCC
Confidence 456677777774432 357777888885443
No 35
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=31.40 E-value=5.1e+02 Score=27.79 Aligned_cols=125 Identities=19% Similarity=0.167 Sum_probs=75.3
Q ss_pred cccccCCccchhhhhhhcccHHHHHHhHHHHHHHHHHhhhhhccCCcccch----hhhHHHHHHHHHHHHHHHHHhhh-c
Q 019132 17 LQQLLISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSE----VQDEFSAVITKALVTLVLGLETK-F 91 (345)
Q Consensus 17 ~~~~~~~~e~~k~~C~IINTADYC~~Ti~qLeekl~e~id~~~kekIdf~~----e~D~F~~visk~I~~LV~~le~~-l 91 (345)
-++..++++|-+..-.+|-+|+=.+..-+-+|+ +.+.++..++.++.|++ |.+.++++.-.+++...+.+.+. .
T Consensus 389 ls~~~Lse~es~r~~~iid~a~~lE~IgDiie~-l~~~~~kk~~~~~~fse~~~~el~~l~~~~~~n~~~a~~~l~~~D~ 467 (533)
T COG1283 389 LSKEGLSEEESRRWAEIIDAAINLEHIGDIIER-LLELADKKIANGRAFSEDGLEELDALFALTLENLRLAISVLVTGDL 467 (533)
T ss_pred hccccCCHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 344557888888888888777766555555555 88888887788888875 46778888888887777765533 1
Q ss_pred hHHhhcccCCCCCCCccCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHH--HHHHhHhccCCCh
Q 019132 92 DNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPR--FYANIFKCKHISE 166 (345)
Q Consensus 92 e~a~~~m~~~nW~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~--f~~~I~k~kpis~ 166 (345)
+-+-+ .|.. ++.+.......+..++++..|- ..++-.. |++-+--.|.|+.
T Consensus 468 ~~ar~------------------lv~~-----k~~~r~~e~~~~k~H~~Rl~~g-~~s~~t~~l~lDii~dlkrIn~ 520 (533)
T COG1283 468 ELARR------------------LVER-----KKRVRRLERRSSKRHLDRLRDG-AASVETSSLHLDILRDLKRINS 520 (533)
T ss_pred HHHHH------------------HHHH-----HHHHHHHHHHHHHHHHHHHHcC-cchhhhchhHHHHHHHHHHHHH
Confidence 11111 0100 1223333344566777777666 5555555 5555544444443
No 36
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=30.65 E-value=5.5e+02 Score=25.56 Aligned_cols=166 Identities=15% Similarity=0.159 Sum_probs=85.1
Q ss_pred hhhhhhcccHHHHHHhHHHHHHHHHHhhhhh----ccCCcccchh-hhHHHHHHHHHHHHHHHHHh-hhchHHhhcccCC
Q 019132 28 RVICYIVNSAEYCHKTSGDLAESVSKIIDSQ----LADGVDMSEV-QDEFSAVITKALVTLVLGLE-TKFDNEMAGMTRV 101 (345)
Q Consensus 28 k~~C~IINTADYC~~Ti~qLeekl~e~id~~----~kekIdf~~e-~D~F~~visk~I~~LV~~le-~~le~a~~~m~~~ 101 (345)
--+--.||.||+|..- =-.++++.|.-. =+...-|+++ ...|.+.|.+=++.+...-+ ......+..|.+.
T Consensus 122 sALLNlin~Cd~F~~~---d~~~v~eVI~~RN~~MHS~emkvs~~wm~~~~~~i~nll~~f~~ipe~~~a~~~Ie~ll~~ 198 (307)
T PF15112_consen 122 SALLNLINSCDHFKKY---DRKKVREVIKCRNEIMHSSEMKVSSQWMRDFQMKIQNLLNEFRNIPEIVAAGSRIEQLLTS 198 (307)
T ss_pred HHHHHHHHHhhccccc---cHHHHHHHHHHHHHhhcCcccccCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHhh
Confidence 3345578999999884 123344443210 0122334433 56677755555543333211 2234456778889
Q ss_pred CCCCCccCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhccCCChhhHhhHHhhHHHHHH
Q 019132 102 PWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKT 181 (345)
Q Consensus 102 nW~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis~~gaeQLLLD~~sLK~ 181 (345)
+|.....-.|+..++.....++.+.-.+.. .-...+=|++. ..+.++. =.++..|+.+=++.+++.
T Consensus 199 d~~v~~~~~d~~Dg~~~~~~~~~~~~~i~e-----~e~e~Lke~lq-----el~~~~e----~~~~~~ee~~~~l~~~~~ 264 (307)
T PF15112_consen 199 DWAVHIPEEDQRDGCESETDVYLSESQILE-----IEMELLKEKLQ-----ELYLQAE----EQEVLPEEDSKRLEVLKE 264 (307)
T ss_pred hhhhcCchhhccchhhhccchhhhHHHHHH-----HHHHHHHHHHH-----HHHHHHh----hccccchhhhHHHHHHHH
Confidence 999887777888887776655443332221 11111111211 1112221 222233667777788888
Q ss_pred HHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhcCC
Q 019132 182 ILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSP 220 (345)
Q Consensus 182 ~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~sP 220 (345)
+|..= +.-......++++|+.+-.=+..+
T Consensus 265 fL~~N----------kDL~~~l~~e~qkL~~l~~k~~~~ 293 (307)
T PF15112_consen 265 FLRNN----------KDLRSNLQEELQKLDSLQTKHQKL 293 (307)
T ss_pred HHHhc----------HHHHHHHHHHHHHHHHHHHHhcch
Confidence 87432 223445556666666665555444
No 37
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=30.49 E-value=55 Score=32.08 Aligned_cols=72 Identities=18% Similarity=0.232 Sum_probs=52.3
Q ss_pred ccCCcccchhhhHHHHHHHHHHHHHHHH--HhhhchHHhhcccCC-C-CCCCccCCCcCccHHHHHHHHhhhHHHH
Q 019132 59 LADGVDMSEVQDEFSAVITKALVTLVLG--LETKFDNEMAGMTRV-P-WGSLESVGDQSEYVNGINMILTSSIPVL 130 (345)
Q Consensus 59 ~kekIdf~~e~D~F~~visk~I~~LV~~--le~~le~a~~~m~~~-n-W~~~e~VgD~S~YV~~i~~~L~~~~~~i 130 (345)
|.+|.|.++|.+-+...+...-..|-.+ +-..+++-+++|.+. | -++=..--+-|.+|..|+..|.+.=..+
T Consensus 212 ~adK~DI~EEl~RL~sHl~~f~~~L~~~~~vGrkLDFL~QEmnRE~NTigSKs~d~~is~~vVe~K~eiEkiREQV 287 (291)
T TIGR00255 212 LAQRIDIAEEIDRLDSHVKEFYNILKKGEAVGRKLDFMMQELNRESNTLASKAIDADITNLAVEMKVLIEKIKEQI 287 (291)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHhcCCCcCcchhHHHHHHhHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999999998888773 788999999999882 2 2221122245677777777776544333
No 38
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=30.18 E-value=4.7e+02 Score=25.74 Aligned_cols=106 Identities=14% Similarity=0.151 Sum_probs=60.4
Q ss_pred hcccHHHHHHhHHHHHHHHHHhhhhhccCCcccchhhhHHHHHHHHHHHH-------HHHHHhhhchHHhhcccCCCCCC
Q 019132 33 IVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVT-------LVLGLETKFDNEMAGMTRVPWGS 105 (345)
Q Consensus 33 IINTADYC~~Ti~qLeekl~e~id~~~kekIdf~~e~D~F~~visk~I~~-------LV~~le~~le~a~~~m~~~nW~~ 105 (345)
-|++++|..+.+. |.+.+.+.-... ....|+++.=.|.+++++--.. -+..+-..+--.++.-..++|..
T Consensus 214 ~i~~~e~~~eLi~-la~el~~~~~r~--~~~gLseeE~AFyd~L~~~~~~~~~~~~e~l~~la~el~~~lk~~~~vDW~~ 290 (335)
T PF11867_consen 214 SISSEEVIEELIK-LAKELREEEERA--EELGLSEEELAFYDALAKNESAVEEMGDEELKELAKELTETLKENVTVDWTK 290 (335)
T ss_pred cchHHHHHHHHHH-HHHHHHHHHhcc--cccCCCHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHhccccCcCcee
Confidence 4588888888776 555555443333 3456888888999999663211 13345555666666777789987
Q ss_pred CccCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHH
Q 019132 106 LESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASS 149 (345)
Q Consensus 106 ~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~ 149 (345)
-+++ -..|+..++..+.. .-.++......++.++++
T Consensus 291 ke~~------ra~~r~~Ik~~L~k--~~ypp~~~~~~~~~v~~q 326 (335)
T PF11867_consen 291 KEDV------RAKMRRAIKRLLRK--YGYPPDKQEEAVDEVMEQ 326 (335)
T ss_pred CccH------HHHHHHHHHHHHHH--cCCChHHHHHHHHHHHHH
Confidence 6553 23333333222111 112455556666655443
No 39
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=30.01 E-value=4e+02 Score=25.45 Aligned_cols=135 Identities=12% Similarity=0.141 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCCCCCccCCCcCccHHHHHHHHhhhHHHHhhhccHHHHH-------H
Q 019132 69 QDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQ-------F 141 (345)
Q Consensus 69 ~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~-------~ 141 (345)
.....+.|.+++-.|...|...++-.-.++.+..+...++.+++..|+. +.+..+...+...+...|.. .
T Consensus 67 ~~~L~~~I~~~LP~l~~~I~~~l~~~~~eL~~lG~~~~~~~~~~~~~l~---~~~~~f~~~~~~~i~G~~~~~~~~~~l~ 143 (295)
T PF01031_consen 67 SELLVEHIRKSLPSLKSEIQKKLQEAEKELKRLGPPRPETPEEQRAYLL---QIISKFSRIFKDAIDGEYSDEFSTNELR 143 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHCSSSCHHHHHHHHH---HHHHHHHHHHHHHHTT-------TTS--
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH---HHHHHHHHHHHHHhcCCccccccccccc
Confidence 3556777888888888888877777777777766654334444445544 44555555566666544443 1
Q ss_pred HHHHHHHHHHHHHHHHhHhccCCChhhHhhHHhhHHHHHHHHhhCCCCCC-CCCCchhhHHHHHHhHHHHHHH
Q 019132 142 FLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGR-QTSNAASYTKFVSREMSKAEAL 213 (345)
Q Consensus 142 fcDKlv~~fi~~f~~~I~k~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~-~~~~~~sY~K~V~~~~~klE~l 213 (345)
...++...|-..|-..+-+..|.... +...+++.+.+.-.... .-.+...|...|.+.+++++.-
T Consensus 144 ~~ari~~~f~~~~~~~~~~~~~~~~~-------~~~eI~~~i~~~~G~elp~f~p~~afe~Li~~~i~~l~~P 209 (295)
T PF01031_consen 144 GGARIRYIFNEWFDKFLEKIDPFEDL-------SDEEIRTAIRNSRGRELPGFVPESAFESLIRKQIEKLEEP 209 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHH-------HHHHHHHHHHH--S-SSS-SCCHHHHHHHHHHHHHTTHHH
T ss_pred hhhHHHHHHHhhhhhhhhhhccccch-------hHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhH
Confidence 22333333433334444443443222 34456666665332211 1234567888888888766543
No 40
>PHA03373 tegument protein; Provisional
Probab=29.50 E-value=5.1e+02 Score=24.81 Aligned_cols=37 Identities=14% Similarity=0.278 Sum_probs=28.4
Q ss_pred HHhhCCC-CCHHHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 019132 228 YRALLPE-GTPMEFQRILELKGLKKADQQTILDDFNKH 264 (345)
Q Consensus 228 Y~~L~~d-~S~~~FqkIL~LKGl~k~eq~~lle~f~~~ 264 (345)
-..+--| .+-.+.+||+.|=++++.+-..+|+..-..
T Consensus 139 L~KFStDQsTLceveKi~~LVdmD~e~S~rLl~~~a~~ 176 (247)
T PHA03373 139 LEKFSTDQSTLCEVEKINRLVDMDGENSKRLLTELASA 176 (247)
T ss_pred HHHhccchHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 3444556 455789999999999999999999887533
No 41
>PF04878 Baculo_p48: Baculovirus P48 protein; InterPro: IPR006962 This family comprises the Baculovirus P48 proteins. They contain two possible membrane-spanning domains and a cysteine-rich domain that are conserved in all of the proteins. The Bombyx mori (Silk moth) nuclear polyhedrosis virus protein, O92463 from SWISSPROT, has been described as a putative DNA helicase.
Probab=29.46 E-value=1.8e+02 Score=29.64 Aligned_cols=81 Identities=16% Similarity=0.221 Sum_probs=44.5
Q ss_pred cCCccchhhhhhhcccHHHHHHh--HHHHHHHHHHhhhhhccCCcccchh-hhH------H------HHHHHHHHHHHHH
Q 019132 21 LISERDERVICYIVNSAEYCHKT--SGDLAESVSKIIDSQLADGVDMSEV-QDE------F------SAVITKALVTLVL 85 (345)
Q Consensus 21 ~~~~e~~k~~C~IINTADYC~~T--i~qLeekl~e~id~~~kekIdf~~e-~D~------F------~~visk~I~~LV~ 85 (345)
..+..++|.+--+.=-.|+..++ -.+.=+-|+..+.+--. .|.+.. .+. . ..-++.++..|..
T Consensus 74 ~~n~~~vK~Ifs~Fl~~eFi~QVP~F~~Im~~l~~Yykp~~~--p~v~~i~C~~C~~~~kl~Cl~Ck~~YlS~~is~lD~ 151 (374)
T PF04878_consen 74 QDNNHEVKQIFSMFLRDEFIGQVPNFQTIMKYLQKYYKPIPS--PDVEEIMCDKCSPVNKLECLTCKINYLSEAISTLDS 151 (374)
T ss_pred ccchHhHHHHHHHHHHHHHHhhCchHHHHHHHHHHhcCCCCC--CCcchhhhhhcccccccchhhhhHHHHHHHHHHHHh
Confidence 34555777776666557776653 12233333333433311 222210 110 0 1235678888888
Q ss_pred HHhhhchHHhhcccCCCC
Q 019132 86 GLETKFDNEMAGMTRVPW 103 (345)
Q Consensus 86 ~le~~le~a~~~m~~~nW 103 (345)
++..+-+--+|.|...+-
T Consensus 152 ~iQ~GWDiFlRPM~GlPL 169 (374)
T PF04878_consen 152 GIQDGWDIFLRPMFGLPL 169 (374)
T ss_pred hhhccHHHHHHHHhhhHH
Confidence 888888888888877554
No 42
>PF02194 PXA: PXA domain; InterPro: IPR003114 This domain is found associated with PX domains. The PX (phox) domain [] occurs in a variety of eukaryotic proteins associated with intracellular signalling pathways.
Probab=29.40 E-value=3.9e+02 Score=23.36 Aligned_cols=70 Identities=24% Similarity=0.360 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhhhchHHhhcccCCCCCCCccCCCcCccHHHHHHHHhhhHHHHhhhccHH-HHHHHHHHHHHHHHHHH
Q 019132 76 ITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI-YFQFFLDKLASSLGPRF 154 (345)
Q Consensus 76 isk~I~~LV~~le~~le~a~~~m~~~nW~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~-Y~~~fcDKlv~~fi~~f 154 (345)
++..++.|++.+..+ +- ..|+. .+++...++..+...|...+..+...+... ....++++++..+..++
T Consensus 4 vd~~l~~li~~I~rd-------fV-~sWY~--~Is~d~~F~~ei~~~l~~~~~~l~~R~~~vD~~~ll~~~l~~~l~~Hl 73 (185)
T PF02194_consen 4 VDEALHELIDLILRD-------FV-NSWYS--KISPDPEFPNEIRRILRHALRELSQRLSRVDLVKLLLDDLLPILTKHL 73 (185)
T ss_pred HHHHHHHHHHHHHHH-------HH-Hhhhh--ccCCcHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 445555555555444 22 34883 455555899999999999999988877543 33344777766665444
Q ss_pred H
Q 019132 155 Y 155 (345)
Q Consensus 155 ~ 155 (345)
-
T Consensus 74 ~ 74 (185)
T PF02194_consen 74 R 74 (185)
T ss_pred H
Confidence 3
No 43
>PLN03162 golden-2 like transcription factor; Provisional
Probab=28.18 E-value=2.8e+02 Score=28.58 Aligned_cols=41 Identities=12% Similarity=0.231 Sum_probs=33.8
Q ss_pred hhHHHHHHhhCCC-CCHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 019132 222 DSVADTYRALLPE-GTPMEFQRILELKGLKKADQQTILDDFN 262 (345)
Q Consensus 222 e~~ve~Y~~L~~d-~S~~~FqkIL~LKGl~k~eq~~lle~f~ 262 (345)
+.|++....|=.+ .++.-.-++++.+||.+..+...|+.||
T Consensus 246 ~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYR 287 (526)
T PLN03162 246 RRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYR 287 (526)
T ss_pred HHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHH
Confidence 5688887777545 5666778888899999999999999998
No 44
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=28.01 E-value=1.2e+02 Score=26.20 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=26.1
Q ss_pred hhHHHHHHhhCCC-----CCHHHHHHHHhhcCCCHHHHHHHHHHHHhcC
Q 019132 222 DSVADTYRALLPE-----GTPMEFQRILELKGLKKADQQTILDDFNKHG 265 (345)
Q Consensus 222 e~~ve~Y~~L~~d-----~S~~~FqkIL~LKGl~k~eq~~lle~f~~~~ 265 (345)
|.++++=..|+-| .+.+.=...|+=|||...|+.+.++.-....
T Consensus 3 e~li~~A~~FL~~p~V~~sp~~~k~~FL~sKGLt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 3 EDLIEQAVKFLQDPKVRNSPLEKKIAFLESKGLTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHHHHHHCTTTCCCS-HHHHHHHHHHCT--HHHHHHHHHHHT--S
T ss_pred HHHHHHHHHHhCCcccccCCHHHHHHHHHcCCCCHHHHHHHHHhcCCcc
Confidence 3444444444443 3334446778889999999999998877554
No 45
>COG3337 CRISPR system related protein [Defense mechanisms]
Probab=27.92 E-value=1.1e+02 Score=26.62 Aligned_cols=115 Identities=17% Similarity=0.124 Sum_probs=61.2
Q ss_pred HHHHHHhHHHHHHHHHHhhhhhccCCcccchhhhHH-HHHHHHHHHHHHHHHhhhchH----HhhcccCCCCCCCccCCC
Q 019132 37 AEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEF-SAVITKALVTLVLGLETKFDN----EMAGMTRVPWGSLESVGD 111 (345)
Q Consensus 37 ADYC~~Ti~qLeekl~e~id~~~kekIdf~~e~D~F-~~visk~I~~LV~~le~~le~----a~~~m~~~nW~~~e~VgD 111 (345)
|.+...-+++|+++ |+.++++ +.+-...| +=|+.+++..-|..++++.+. -.....+..|+.
T Consensus 9 a~fA~~~V~e~k~~-----~e~~~~k--y~Sy~~k~PsmI~~NGL~~TvAF~~SK~e~id~~~yls~~kea~g~------ 75 (134)
T COG3337 9 ANFALQSVQELKKS-----DEAFKTK--YGSYCHKFPSMIRLNGLRLTVAFYESKKENIDHARYLSGLKEALGV------ 75 (134)
T ss_pred HHHHHHHHHHHHhh-----HHHHHHH--HHHHHHhccHHHHhccchHHHHHHHHhhhchhhHHhcccCHHHHHH------
Confidence 34445556666655 3333333 34444455 445667777777777766552 111122223332
Q ss_pred cCccHHHHHHHHhhhHHHHhhhc-cHHHHHHHHHHHHHHHHHHHHHHhHhccCCChhhHhhH
Q 019132 112 QSEYVNGINMILTSSIPVLGSLL-SPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQM 172 (345)
Q Consensus 112 ~S~YV~~i~~~L~~~~~~i~~~L-~~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis~~gaeQL 172 (345)
+.+|++..++-+.+.- ...-.+.|..+.. .=...|.+.|.+|-|-+..-||-+
T Consensus 76 -------~enH~sn~l~egkd~~~~~~~~~~~ae~~~-i~~~~yte~iL~~~~w~k~vaeg~ 129 (134)
T COG3337 76 -------SENHASNDLPEGKDRGAEYRRMTEQAERAS-IWFKRYTEAILKCSPWSKPVAEGD 129 (134)
T ss_pred -------HHHHHHhhcccccccCCcccHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHhhh
Confidence 2234545555544422 2455556665543 345788999999988776666654
No 46
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.04 E-value=8.1e+02 Score=25.98 Aligned_cols=130 Identities=14% Similarity=0.060 Sum_probs=69.3
Q ss_pred cchhhhhhhcccH-HHHHHhHHHHHHHHHHhhh--hhccCCcccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccCC
Q 019132 25 RDERVICYIVNSA-EYCHKTSGDLAESVSKIID--SQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRV 101 (345)
Q Consensus 25 e~~k~~C~IINTA-DYC~~Ti~qLeekl~e~id--~~~kekIdf~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~~ 101 (345)
+-+.+|-..+|+. .|....+..|-+++.+.=+ ..+| ..=.+|.++..+...+...+-..- .+.+.
T Consensus 42 k~l~~Il~~ts~~~~~i~~~v~aLs~Rl~~TrnW~VAlK-------sLIliH~ll~~G~~~f~~~l~~~~-----~~l~l 109 (491)
T KOG0251|consen 42 KYLDEILSATSSSPASIPSCVHALSERLNKTRNWTVALK-------ALILIHRLLKEGDPSFEQELLSRN-----LILNL 109 (491)
T ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHhCCCcceeehHH-------HHHHHHHHHhcCcHHHHHHHHhcc-----cccch
Confidence 3344444444444 5555555555555554411 1122 223344444444444443322221 22333
Q ss_pred CCCCCcc---CCCcCccHHHHHHHHhhhHHHHhhhccH----------HHHHH--HHHHHHHHH--HHHHHHHhHhccCC
Q 019132 102 PWGSLES---VGDQSEYVNGINMILTSSIPVLGSLLSP----------IYFQF--FLDKLASSL--GPRFYANIFKCKHI 164 (345)
Q Consensus 102 nW~~~e~---VgD~S~YV~~i~~~L~~~~~~i~~~L~~----------~Y~~~--fcDKlv~~f--i~~f~~~I~k~kpi 164 (345)
.|-.-++ -.|.|.+|+.-..-|.+++..++..-.+ ...+. --+++...+ +..+++.+.+|+|+
T Consensus 110 S~F~d~s~~~~~d~safVR~Ya~YLderl~~~~~~~~d~~~~~~~~~k~~~~~~~~~~~~l~~i~~LQ~lld~ll~~~p~ 189 (491)
T KOG0251|consen 110 SDFRDKSSSLTWDMSAFVRTYALYLDERLECYRVLGFDIEKVKRGKEKTKDRSSKSTDKLLKTIPKLQNLLDRLLKCRPT 189 (491)
T ss_pred hhhhcccccccchhhHHHHHHHHHHHHHHHHHHHhccccccccCcccccccccccchHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4432222 4578889999888888887777653320 00011 145666666 88999999999998
Q ss_pred Ch
Q 019132 165 SE 166 (345)
Q Consensus 165 s~ 166 (345)
..
T Consensus 190 ~~ 191 (491)
T KOG0251|consen 190 GS 191 (491)
T ss_pred ch
Confidence 84
No 47
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=23.33 E-value=19 Score=30.13 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=14.7
Q ss_pred hhhhhcccHHHHHHhHHHHH
Q 019132 29 VICYIVNSAEYCHKTSGDLA 48 (345)
Q Consensus 29 ~~C~IINTADYC~~Ti~qLe 48 (345)
.+|+|+|+|.+|--|- |.+
T Consensus 22 kv~LIVNvAs~Cg~t~-qy~ 40 (108)
T PF00255_consen 22 KVLLIVNVASKCGYTK-QYK 40 (108)
T ss_dssp SEEEEEEEESSSTTHH-HHH
T ss_pred CEEEEEecccccCCcc-ccH
Confidence 5799999999996555 444
No 48
>PRK11820 hypothetical protein; Provisional
Probab=21.22 E-value=1.4e+02 Score=29.32 Aligned_cols=72 Identities=19% Similarity=0.249 Sum_probs=52.2
Q ss_pred ccCCcccchhhhHHHHHHHHHHHHHHHH--HhhhchHHhhcccCC-C-CCCCccCCCcCccHHHHHHHHhhhHHHH
Q 019132 59 LADGVDMSEVQDEFSAVITKALVTLVLG--LETKFDNEMAGMTRV-P-WGSLESVGDQSEYVNGINMILTSSIPVL 130 (345)
Q Consensus 59 ~kekIdf~~e~D~F~~visk~I~~LV~~--le~~le~a~~~m~~~-n-W~~~e~VgD~S~YV~~i~~~L~~~~~~i 130 (345)
|.+|+|.++|.+-+...+...-..|-.+ +-..+++-+++|.+. | -++=..--+-|.+|..|+..|.+.=..+
T Consensus 209 ~adK~DI~EEi~RL~sHl~~f~~~L~~~~~vGrkLDFL~QEm~RE~NTigSKs~~~~is~~vVe~K~elEkiREQV 284 (288)
T PRK11820 209 LAQKADIAEELDRLKSHLKEFREILKKGGPVGRKLDFLMQELNREANTLGSKSNDAEITNLVVELKVLIEQMREQV 284 (288)
T ss_pred HHHHcchHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHhHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999998888763 789999999999882 2 2221122245677777777766543333
No 49
>PF05859 Mis12: Mis12 protein; InterPro: IPR008685 Kinetochores are the chromosomal sites for spindle interaction and play a vital role for chromosome segregation. Fission Saccharomyces cerevisiae kinetochore protein Mis12, is required for correct spindle morphogenesis, determining metaphase spindle length []. Thirty-five to sixty percent extension of metaphase spindle length takes place in Mis12 mutants []. It has been shown that Mis12 might genetically interact with Mal2p [].; GO: 0007049 cell cycle, 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=21.09 E-value=2.5e+02 Score=24.32 Aligned_cols=59 Identities=22% Similarity=0.237 Sum_probs=35.9
Q ss_pred hhcccH-HHHHHhHHHHHHHHHHhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHHhhhchHHh
Q 019132 32 YIVNSA-EYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEM 95 (345)
Q Consensus 32 ~IINTA-DYC~~Ti~qLeekl~e~id~~~kekIdf~~e~D~F~~visk~I~~LV~~le~~le~a~ 95 (345)
=|||+. ||+...+..+|+.+.+...... +.-+..+.. .-|.+|+..|-..++..++..+
T Consensus 16 dIiNavnd~l~~~~~~~E~~l~~~~~~~~-~~~~~~~~~----~ei~~G~~kletlle~~~Dk~f 75 (144)
T PF05859_consen 16 DIINAVNDILYDAFDAVEEYLLERLPSKL-GSEDYPERS----EEIEKGTHKLETLLESRVDKNF 75 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccc-CcccchhhH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 366765 8999999999999999876421 111222111 5556666666555555555443
No 50
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=20.50 E-value=34 Score=33.96 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCC-CCchhhHHH
Q 019132 304 DVLTRAAALGRG-AATTGFKRF 324 (345)
Q Consensus 304 ~~~~~~~~~~~~-~~~~~~~~~ 324 (345)
.|..--+.|.+| .+|-|+|+-
T Consensus 261 ~~~AlFaeLN~G~~iT~gLkKV 282 (312)
T PF01213_consen 261 GMSALFAELNQGEDITKGLKKV 282 (312)
T ss_dssp ----------------------
T ss_pred cHHHHHHHHhccCccccCCccc
Confidence 555555678888 677777763
Done!