Query 019132
Match_columns 345
No_of_seqs 117 out of 201
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 11:24:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019132.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019132hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ns4_A Vacuolar protein sortin 100.0 8.9E-36 3E-40 278.5 15.0 139 129-267 13-181 (271)
2 2fji_1 Exocyst complex compone 99.9 1.8E-22 6.2E-27 200.0 23.1 222 26-261 135-366 (399)
3 3fhn_A Protein transport prote 98.5 8.1E-07 2.8E-11 93.7 13.7 240 3-257 433-696 (706)
4 3hr0_A COG4; conserved oligome 98.4 1.7E-05 5.8E-10 74.7 17.5 219 25-256 17-260 (263)
5 2a2f_X Exocyst complex compone 98.1 3.2E-05 1.1E-09 74.9 14.2 181 28-221 138-320 (325)
6 3swh_A MUNC13-1, protein UNC-1 97.4 0.0021 7.2E-08 62.5 13.4 212 6-230 95-337 (341)
7 3n1e_A Vacuolar protein sortin 97.0 0.022 7.6E-07 48.7 14.1 120 65-191 10-131 (141)
8 3mmi_A Myosin-4; globular tail 73.4 72 0.0025 31.2 19.4 165 68-246 137-309 (386)
9 2a26_A Calcyclin-binding prote 50.4 38 0.0013 23.6 5.5 41 167-215 4-44 (50)
10 3iot_A Maltose-binding protein 33.4 12 0.00041 36.0 0.9 25 239-265 367-391 (449)
11 3jth_A Transcription activator 32.8 1.2E+02 0.0043 22.3 6.6 61 202-266 5-65 (98)
12 1irz_A ARR10-B; helix-turn-hel 32.4 1E+02 0.0034 22.5 5.6 42 222-263 16-58 (64)
13 2f6h_X Myosin-2, type V myosin 32.4 3.6E+02 0.012 26.2 19.5 180 69-262 144-349 (419)
14 1l6x_B Minimized B-domain of p 27.9 74 0.0025 20.5 3.6 27 238-264 7-33 (34)
15 1ysm_A Calcyclin-binding prote 26.5 1.5E+02 0.0051 22.4 5.8 41 169-217 5-45 (77)
16 3cuo_A Uncharacterized HTH-typ 25.3 1.6E+02 0.0055 21.3 6.0 60 204-266 8-67 (99)
17 2wq1_A General control protein 23.9 42 0.0015 21.5 1.9 15 44-58 2-16 (33)
18 2lkp_A Transcriptional regulat 23.7 2.4E+02 0.0083 21.4 7.4 59 204-266 16-74 (119)
19 1r1u_A CZRA, repressor protein 21.9 2.6E+02 0.0088 21.0 6.8 58 205-266 11-68 (106)
20 1kd8_B GABH BLL, GCN4 acid bas 21.6 82 0.0028 20.5 2.9 31 43-77 2-32 (36)
21 2kko_A Possible transcriptiona 21.3 2.7E+02 0.0093 21.1 6.9 58 205-266 10-67 (108)
22 1ub9_A Hypothetical protein PH 20.3 1E+02 0.0035 22.4 3.9 57 207-266 1-59 (100)
23 2r2v_A GCN4 leucine zipper; co 20.2 55 0.0019 21.1 1.9 15 44-58 3-17 (34)
No 1
>3ns4_A Vacuolar protein sorting-associated protein 53; GARP complex component, helical bundle, membrane tethering C membrane traffic, VPS51; HET: MSE; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-36 Score=278.45 Aligned_cols=139 Identities=19% Similarity=0.305 Sum_probs=124.5
Q ss_pred HHhhhc-cHHHHHHHHHHHHHHHHHHHHHHh-HhccCC---------------Chh-hHhhHHhhHHHHHHHHhhCCCCC
Q 019132 129 VLGSLL-SPIYFQFFLDKLASSLGPRFYANI-FKCKHI---------------SET-GAQQMLLDTQAVKTILLDIPSLG 190 (345)
Q Consensus 129 ~i~~~L-~~~Y~~~fcDKlv~~fi~~f~~~I-~k~kpi---------------s~~-gaeQLLLD~~sLK~~Ll~LP~~~ 190 (345)
.|...+ ++.|+||||||+|++|+++|+++| ++|||+ +++ ||||||||+|+||++|++||+.+
T Consensus 13 ~Il~~~nR~~Y~rnFcDK~ve~~~~~Fi~~Ii~~ckPi~pf~~~~~~rk~~~~s~v~gaEQLLLD~~sLK~~Ll~LP~~~ 92 (271)
T 3ns4_A 13 FILSQFNRDVYKWNFLDKVIDIMTTNFVSNTIRLLQPVPPFSLAGSKRKFETRTVVNIGEQLLLDLELLKEIFHTLPESV 92 (271)
T ss_dssp CCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCSSSSCSCSSCHHHHHHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCcccccccccccccccccchhHHHHHHHHHHHHHHHHHccccc
Confidence 344444 789999999999999999999999 789999 889 99999999999999999999886
Q ss_pred CC---CCCc---hhhHHHHHHhHHHHHHHhHHhcCCc---hhHHHHHHhhCCC-CCHHHHHHHHhhcCCC--HHHHHHHH
Q 019132 191 RQ---TSNA---ASYTKFVSREMSKAEALLKVILSPV---DSVADTYRALLPE-GTPMEFQRILELKGLK--KADQQTIL 258 (345)
Q Consensus 191 ~~---~~~~---~sY~K~V~~~~~klE~lLKvL~sP~---e~~ve~Y~~L~~d-~S~~~FqkIL~LKGl~--k~eq~~ll 258 (345)
++ ..+| ++|+|+|+++|++||++|||||+|. |+||++|..|+|| +|..+|+|||+|||++ ++++.+|.
T Consensus 93 ~~~~~~~~~ts~~sytK~V~~~~~kle~lLKvLm~P~dppe~~ve~Y~~Li~dn~s~~nF~KIL~LKGv~wdl~~wk~~~ 172 (271)
T 3ns4_A 93 SNDSDLRENTSYKRVKRHADNNIDQLLKFIKLLMAPLDSADDYYETYSKLTNNNPDSAVWSFVLALKGIPWDLALWKKMW 172 (271)
T ss_dssp CSCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHTTSCCCHHHHHHHHHHHTCCSCHHHHHHHH
T ss_pred ccccccCCCcccchhhhHHhhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCccHHHHHHHH
Confidence 52 2455 6899999999999999999999984 7899999999999 9999999999999996 89999999
Q ss_pred HHHHhcCCC
Q 019132 259 DDFNKHGPG 267 (345)
Q Consensus 259 e~f~~~~~~ 267 (345)
+.|+....+
T Consensus 173 ~~f~l~~~~ 181 (271)
T 3ns4_A 173 SAYNLETDD 181 (271)
T ss_dssp HHHHHHC--
T ss_pred HHHhhcccc
Confidence 999976444
No 2
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.8e-22 Score=199.98 Aligned_cols=222 Identities=10% Similarity=0.140 Sum_probs=205.2
Q ss_pred chhhhhhhcccHHHHHHhHHHHHHHHHHhhhhhccCCc--ccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCC
Q 019132 26 DERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGV--DMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPW 103 (345)
Q Consensus 26 ~~k~~C~IINTADYC~~Ti~qLeekl~e~id~~~kekI--df~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW 103 (345)
-+.++|.++|++..|.+.+.+|+.++.+.+++.|.+++ +|+...|+|.++.+.|++.|+..+..+++|.|..++...|
T Consensus 135 ~~e~liA~~Nn~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~f~~l~~~~~~~L~~~if~dl~p~~~~lft~~W 214 (399)
T 2fji_1 135 LVEYLIAVSNDQMKAADYAVAISSKYGKLVSKVYEKQITNHLEGTLDGFAEVAQCSSLGLITLMFDDLRKPYQEIFSKTW 214 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTHHHHTTTTSGGG
T ss_pred HHHhhhhhhccHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence 37899999999999999999999999999999998877 8999999999999999999999999999999999999999
Q ss_pred CCCccCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhccCCC---hhhHhhHHhhHHHHH
Q 019132 104 GSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHIS---ETGAQQMLLDTQAVK 180 (345)
Q Consensus 104 ~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis---~~gaeQLLLD~~sLK 180 (345)
... ++|.+|+.++.++++.++.+|++.|+..|++.+.+.++.+|+.+|.++.+++ ..+++||..|.+.|+
T Consensus 215 ~~~-------~~v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~~~~~~v~~Yl~~l~~~~~~~~~~~~~~~~l~~D~~~l~ 287 (399)
T 2fji_1 215 YMG-------SQAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSFEHSFKNKNNKFLEAMKRDFEIFY 287 (399)
T ss_dssp TTC-------CHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHGGGGCCCCCCGGGHHHHHHHHHHHHHH
T ss_pred cCC-------cHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Confidence 752 2999999999999999999999999999999999999999999999755577 899999999999999
Q ss_pred HHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhcCCc-hhHHHHHHhh---CCCCCHHHHHHHHhhc-CCCHHHHH
Q 019132 181 TILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPV-DSVADTYRAL---LPEGTPMEFQRILELK-GLKKADQQ 255 (345)
Q Consensus 181 ~~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~sP~-e~~ve~Y~~L---~~d~S~~~FqkIL~LK-Gl~k~eq~ 255 (345)
.+|.++++. ..+|++.|...+..++.+.. |.+++ +.+.+.|..+ .||.+...+++||.+| +++|++++
T Consensus 288 ~~f~~~~~~------~~~~~~~v~~~~~~l~~l~~-L~~d~~~~i~~~~~~l~~~ypD~~~~~V~aiL~~R~D~~~~~~k 360 (399)
T 2fji_1 288 QLFVKVLDG------NESKDTLITQNFTVMEFFMD-LSCEPIDSILDIWQKYLEVYWDSRIDLLVGILKCRKDVSSSERK 360 (399)
T ss_dssp HHHHHHTTT------CTTHHHHHHHHHHHHHHHHH-HHHSCGGGHHHHHHHHHTTCTTCCSHHHHHHHTTCTTCCHHHHH
T ss_pred HHHHHhccc------cchhhHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCCHHHHH
Confidence 999999972 45789999999999999999 88776 8888888555 6789999999999997 69999999
Q ss_pred HHHHHH
Q 019132 256 TILDDF 261 (345)
Q Consensus 256 ~lle~f 261 (345)
++++..
T Consensus 361 ~ll~~~ 366 (399)
T 2fji_1 361 KIVQQA 366 (399)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999999
No 3
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=98.51 E-value=8.1e-07 Score=93.69 Aligned_cols=240 Identities=15% Similarity=0.215 Sum_probs=178.7
Q ss_pred hhHHHHHHHHHhc--ccccccCCccchhhhhhhcccHHHHHHhHH---------HHHHHHHHhhhhhccCCcccchhhhH
Q 019132 3 QSFLQDYQEVVQG--LLQQLLISERDERVICYIVNSAEYCHKTSG---------DLAESVSKIIDSQLADGVDMSEVQDE 71 (345)
Q Consensus 3 ~~~l~~y~~~i~~--~~~~~~~~~e~~k~~C~IINTADYC~~Ti~---------qLeekl~e~id~~~kekIdf~~e~D~ 71 (345)
-.++-.|..-+.. ..++-..+++.....|..||+.-|...++. +|-+.+.++.+.. +.--|++.-..
T Consensus 433 iqL~d~Y~~~L~~~s~lgr~~tke~~~~~g~~~L~~L~~V~~~L~dWsddvfFLeLw~~l~~~t~s~--~gSIFDetIs~ 510 (706)
T 3fhn_A 433 MNLTSSYLDYILTVDSLNETRTKEQELYQTMAKLQHVNFVYRKIKSLSSNFIFIQLTDIVNSTESKK--YNSLFQNVEND 510 (706)
T ss_dssp HHHHHHHHHHHHTCCCSCSEEEHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHTTCC--CSCTTHHHHHH
T ss_pred HhhHHHHHHHHhCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhcccCcc--cCccHHHHHHH
Confidence 3455556665542 111111222234556667777777776666 5555566554433 23469999999
Q ss_pred HHHHHHH-HHHHHHHHHhhhchHHhhcccC-CCCCCCccCCC--------cCccHHHHHHHHhhhHHHHhhh-ccHHHHH
Q 019132 72 FSAVITK-ALVTLVLGLETKFDNEMAGMTR-VPWGSLESVGD--------QSEYVNGINMILTSSIPVLGSL-LSPIYFQ 140 (345)
Q Consensus 72 F~~visk-~I~~LV~~le~~le~a~~~m~~-~nW~~~e~VgD--------~S~YV~~i~~~L~~~~~~i~~~-L~~~Y~~ 140 (345)
|..+..+ ....+|..+...++.+++...+ ..|.+++...+ .|+-...+.+.|+..+..+... |+...|+
T Consensus 511 Y~~L~~~~~~~~Iv~~v~~eik~~lK~Y~k~s~W~s~~~~~~~~~~~~lspSaEL~~~L~~L~~~L~~L~~~lL~~~~f~ 590 (706)
T 3fhn_A 511 YEKAMSTDMQNSIVHRIQKLLKETLRNYFKISTWSTLEMSVDENIGPSSVPSAELVNSINVLRRLINKLDSMDIPLAISL 590 (706)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHTHHHHHCCGGGTCCCC------CCCCCCGGGHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCcccCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHccCCHHHHH
Confidence 9999999 9999999999999999999988 57987654433 2777888999999999999998 6999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhccCCChhhHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhcCC
Q 019132 141 FFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSP 220 (345)
Q Consensus 141 ~fcDKlv~~fi~~f~~~I~k~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~sP 220 (345)
.+...+++.+..-+++.|+.....+..||.|+..|+..|...|- +|.. + ....|.++.-.|++|.-|
T Consensus 591 ~IwR~ia~~Ld~yL~e~IL~~nkFS~~Ga~Qf~~D~~~L~~v~~-lp~~---------~---~~~~~~~L~E~l~LL~L~ 657 (706)
T 3fhn_A 591 KVKNELLNVIVNYFTESILKLNKFNQNGLNQFLHDFKSLSSILS-LPSH---------A---TNYKCMSLHELVKILKLK 657 (706)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTSCBCHHHHHHHHHHHHHHHTTSC-CCTT---------C---CCHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHhc-CCCc---------c---hhhHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999998776 6641 1 334788888999999888
Q ss_pred chhHHHHHH--hhCCCCCHHHHHHHHhhcCCCHHHHHHH
Q 019132 221 VDSVADTYR--ALLPEGTPMEFQRILELKGLKKADQQTI 257 (345)
Q Consensus 221 ~e~~ve~Y~--~L~~d~S~~~FqkIL~LKGl~k~eq~~l 257 (345)
.+.=.+.|. ..++.+...++...+.+|-++-+|.+..
T Consensus 658 ~d~~~~~f~~~~y~~~~~~~~l~~~~~i~~l~~~~i~d~ 696 (706)
T 3fhn_A 658 YDPNNQQFLNPEYIKTGNFTSLKEAYSIKYLKDTKIQDA 696 (706)
T ss_dssp GCGGGTTTTSHHHHHHCCCSHHHHHHTCSSSCHHHHHHH
T ss_pred CCcchhhHHHHHHHccCChHHHHHhcCcccCCHHHHHHH
Confidence 642222222 3335677789999999999998886544
No 4
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=98.37 E-value=1.7e-05 Score=74.69 Aligned_cols=219 Identities=14% Similarity=0.260 Sum_probs=162.8
Q ss_pred cchhhhhhhcccHHHHHHhHHHHHHHHHHhhhhhccCC---------c-----ccchhhhHHHHHHHHHHHHHH-HHHhh
Q 019132 25 RDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADG---------V-----DMSEVQDEFSAVITKALVTLV-LGLET 89 (345)
Q Consensus 25 e~~k~~C~IINTADYC~~Ti~qLeekl~e~id~~~kek---------I-----df~~e~D~F~~visk~I~~LV-~~le~ 89 (345)
+-+..-|..||+.|-|.+-+.+|-..+.+.+...|... | +|.+..+.|.++++.||+.|. +.+-.
T Consensus 17 ~~~~~Flv~LNnld~s~eyi~rL~~~l~~~l~~~Fp~~~d~~~~~~kv~~~l~~l~~~~~k~~~ll~~gi~~Lf~~~ikp 96 (263)
T 3hr0_A 17 EAKMSFLVTLNNVEVCSENISTLKKTLESDCTKLFSQGIGGEQAQAKFDSCLSDLAAVSNKFRDLLQEGLTELNSTAIKP 96 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHhhHhheeccHHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34455788899998888888877666665555544331 1 345556788899999999998 57889
Q ss_pred hchHHhhcccCCCCCCCcc----CCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhccCCC
Q 019132 90 KFDNEMAGMTRVPWGSLES----VGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHIS 165 (345)
Q Consensus 90 ~le~a~~~m~~~nW~~~e~----VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis 165 (345)
.+.|.+..+..++..--|. .+..-+++..+...+...+.-++.+|.+..|..+..-+++.++..+=..|.+ ++++
T Consensus 97 rLr~~l~~f~~~~y~l~eee~~~~e~~d~~~~~F~~~w~~ll~p~k~~Lt~~~y~~Ll~~~~~~la~~lE~~i~~-~~fn 175 (263)
T 3hr0_A 97 QVQPWINSFFSVSHNIEEEEFNDYEANDPWVQQFILNLEQQMAEFKASLSPVIYDSLTGLMTSLVAVELEKVVLK-STFN 175 (263)
T ss_dssp HHHHHHHGGGGSCBSCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTT-CCBC
T ss_pred HHHHHHHHHhcccccCCHhHHhhhhcccHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHh-CCcC
Confidence 9999998888877653211 0112257889999999999999999998889888888888877766666666 6799
Q ss_pred hhhHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhcCCc-hhHHHHHHhh----CCCCCHHHH
Q 019132 166 ETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPV-DSVADTYRAL----LPEGTPMEF 240 (345)
Q Consensus 166 ~~gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~sP~-e~~ve~Y~~L----~~d~S~~~F 240 (345)
+.||=||=-|+..|-..+..... |. |...|.|+-.|.-||.... |...+-|..- .-.-|+.+-
T Consensus 176 ~lGal~LdrDvr~li~~~~~~~~----------~~--lRekF~RL~QI~~lLnle~~eev~d~~~~~~~~~~W~Ls~~E~ 243 (263)
T 3hr0_A 176 RLGGLQFDKELRSLIAYLTTVTT----------WT--IRDKFARLSQMATILNLERVTEILDYWGPNSGPLTWRLTPAEV 243 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSC----------TT--HHHHTHHHHHHHHHHTCSSGGGGGGTSGGGGTTCCCCSCHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhccc----------hh--hhHHHHHHHHHHHHHcCCChHHHHHHhcccCCCccccCCHHHH
Confidence 99999999999999999966432 33 7899999999999997653 3333323221 113688999
Q ss_pred HHHHhhc-CCCHHHHHH
Q 019132 241 QRILELK-GLKKADQQT 256 (345)
Q Consensus 241 qkIL~LK-Gl~k~eq~~ 256 (345)
.+|+.+| +.+..+..+
T Consensus 244 r~il~lRvDf~~e~I~~ 260 (263)
T 3hr0_A 244 RQVLALRIDFRSEDIKR 260 (263)
T ss_dssp HHHHTTBTTSCHHHHHH
T ss_pred HHHHHhhccCCHHHHHh
Confidence 9999999 777777654
No 5
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=98.13 E-value=3.2e-05 Score=74.92 Aligned_cols=181 Identities=18% Similarity=0.213 Sum_probs=136.4
Q ss_pred hhhhhhcccHHHHHHhHHHHHHHHHHhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCCCCCc
Q 019132 28 RVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLE 107 (345)
Q Consensus 28 k~~C~IINTADYC~~Ti~qLeekl~e~id~~~kekIdf~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW~~~e 107 (345)
..+=++||+. |...-...||+-+......+-.. .+ ...+.|.+..+.|-+.+...+..+++.-+ ++...||...+
T Consensus 138 qi~Qi~iNl~-~le~ac~~le~~l~~~~~~~~~~--~l-~a~~~f~~~r~~Ae~~I~~~v~~KIDdfl-~la~yDW~~~~ 212 (325)
T 2a2f_X 138 QLIQIIIDTQ-YLEKAGPFLDEFVCHMTNTERSV--SQ-TPSAMFHVARQDAEKQVGLRICSKIDEFF-ELSAYDWLLVE 212 (325)
T ss_dssp HHHHHHHHHH-HHHTTHHHHHHHHHHHHTCCC----------CCSCCCTTHHHHHHHHHHHHHHHHHH-TTCCTTCC---
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCccc--ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccCCCCCC
Confidence 3344566764 55788888988888865443222 23 25677888888899999999999999999 99999999999
Q ss_pred cCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhc--cCCChhhHhhHHhhHHHHHHHHhh
Q 019132 108 SVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKC--KHISETGAQQMLLDTQAVKTILLD 185 (345)
Q Consensus 108 ~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~--kpis~~gaeQLLLD~~sLK~~Ll~ 185 (345)
.-++.|.||.++...|+..+. ....|++......|-.....+..++++.+..- |.|+..|.+|+-+|+.-+..+.-+
T Consensus 213 ~~~~ps~yi~dli~fL~~~f~-sl~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~av~~~~~Dv~~lE~fa~~ 291 (325)
T 2a2f_X 213 PPGIASAFITDMISYLKSTFD-SFAFKLPHIAQAACRRTFEHIAEKIYSIMYDEDVKQISTGALTQINLDLMQCEFFAAS 291 (325)
T ss_dssp -CCSCCHHHHHHHHHHHHHHH-TTTTTSHHHHHHHHHHHHHHHHHHHHHHHTC------CCTTHHHHHHHHHHHHHHHTT
T ss_pred CCCCccHHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999 47788999999999999999999999999855 999999999999999999999988
Q ss_pred CCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhcCCc
Q 019132 186 IPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPV 221 (345)
Q Consensus 186 LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~sP~ 221 (345)
.|..+-.. ..+...|..+..++-++++-.
T Consensus 292 ~~v~~l~~-------~~L~~~F~eLrQli~Ll~~~~ 320 (325)
T 2a2f_X 292 EPVPGLKE-------GELSKYFLRNRQLLDLLILEH 320 (325)
T ss_dssp CSSSSCCS-------STTGGGGHHHHHHHHHHHCC-
T ss_pred CCCCCccc-------chHHHHHHHHHHHHHHHHhhh
Confidence 66543211 225567777888888887653
No 6
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=97.37 E-value=0.0021 Score=62.50 Aligned_cols=212 Identities=15% Similarity=0.246 Sum_probs=125.2
Q ss_pred HHHHHHHHhcccccccCCccchhhhhhhcccHHHHHHhHHHHHHHHH-HhhhhhccCCcccchhhhHHHHHHHHHHHHHH
Q 019132 6 LQDYQEVVQGLLQQLLISERDERVICYIVNSAEYCHKTSGDLAESVS-KIIDSQLADGVDMSEVQDEFSAVITKALVTLV 84 (345)
Q Consensus 6 l~~y~~~i~~~~~~~~~~~e~~k~~C~IINTADYC~~Ti~qLeekl~-e~id~~~kekIdf~~e~D~F~~visk~I~~LV 84 (345)
+..|++.|...-..- .+.+-....|++||--+|....++.|.+.+. +.+++...+ -+++-+.....++......+.
T Consensus 95 ~~~Y~~~l~~~~~~~-~~~e~~~~~Cv~lNNie~lR~~L~~l~~~l~~~~l~~~~~~--~~~~lq~~l~~vl~~l~~~~~ 171 (341)
T 3swh_A 95 LLQYADIVSKDFASY-CSKEKEKVPCILMNNTQQLRVQLEKMFEAMGGKELDAEASG--TLKELQVKLNNVLDELSHVFA 171 (341)
T ss_dssp HHHHHHHHHHHHHHH-CCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh-hhhhcccchhhhcccHHHHHHHHHHHHHhcchhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 456777765221111 1222135699999999999999998887662 111211111 123334455555555555555
Q ss_pred HHHhhhchHHhhcccC-------------CCCCCCccCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHH
Q 019132 85 LGLETKFDNEMAGMTR-------------VPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLG 151 (345)
Q Consensus 85 ~~le~~le~a~~~m~~-------------~nW~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi 151 (345)
..+..+++...+.|.. ..|+.. -.+-+.-+.-+...|.+....+...+.+..|..+...+-..++
T Consensus 172 ~~~~~~i~~~v~~m~~~l~~i~~~~~~~~~~~~~~--~~~~~~ai~PLm~yLd~~L~~l~~~L~~~~f~rvL~~lW~~~l 249 (341)
T 3swh_A 172 TSFQPHIEECVRQMGDILSQVKGTGNVPASACSSV--AQDADNVLQPIMDLLDSNLTLFAKICEKTVLKRVLKELWKLVM 249 (341)
T ss_dssp HHTHHHHHHHHHHHHHHHHTCC-----------CH--HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccCCccccccc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666541 123211 1123556777888899999999999999999999999999999
Q ss_pred HHHHHHhH-------------h--ccCCChhhHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHH--hHHHHHHHh
Q 019132 152 PRFYANIF-------------K--CKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSR--EMSKAEALL 214 (345)
Q Consensus 152 ~~f~~~I~-------------k--~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~K~V~~--~~~klE~lL 214 (345)
..+...|. + -|++++--.+.|..+.+.|+.+|+. +++. .| ...+.+ +...++.+|
T Consensus 250 ~~l~~~i~lP~~~~~~~~~~~~~~~r~~~~~~~~~l~~~L~~L~~fFhA----~G~G-L~---~~~Leks~~~~~l~~~L 321 (341)
T 3swh_A 250 NTMERTIVLPPEFSKLKDHMVREEAKSLTPKQCAVVELALDTIKQYFHA----GGVG-LK---KTFLEKSPDLQSLRYAL 321 (341)
T ss_dssp HHHHHHTTSCGGGCSSSCC----------CTTHHHHHHHHHHHHHHHHG----GGTS-CC---HHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcccchhhhhHhhhcccccCCCCHHHHHHHHHHHHHHHHHhcc----CCCC-CC---HHHHccChhHHHHHHHH
Confidence 98888761 1 3566777788899999999999964 1222 12 355544 588999999
Q ss_pred HHhcCCchhHHHHHHh
Q 019132 215 KVILSPVDSVADTYRA 230 (345)
Q Consensus 215 KvL~sP~e~~ve~Y~~ 230 (345)
.+-..+.+.+++.|..
T Consensus 322 ~L~~~~T~~LI~~f~~ 337 (341)
T 3swh_A 322 SLYTQATDLLIKTFVQ 337 (341)
T ss_dssp HHC-------------
T ss_pred HHhcCCHHHHHHHHHh
Confidence 9999998888888853
No 7
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=96.95 E-value=0.022 Score=48.75 Aligned_cols=120 Identities=15% Similarity=0.169 Sum_probs=104.5
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCCCCCccCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHH
Q 019132 65 MSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLD 144 (345)
Q Consensus 65 f~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcD 144 (345)
|+.....|.+-++.--.-||.++.......++ +|..- ....|+||.+|++.+..--..+..+|++.=.+.+..
T Consensus 10 fDkv~rdy~eH~~eI~~KLv~Im~~r~~~~l~-----~Wd~k--~pvpS~~m~tl~Ke~~kLH~~Ls~~LP~~~v~~Im~ 82 (141)
T 3n1e_A 10 FDHITKDYHDHIAEISAKLVAIMDSLFDKLLS-----KYEVK--APVPSPCFRNICKQMTKMHEAIFDLLPEEQTQMLFL 82 (141)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHT-----TCCCC--SSSSCHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhccC--CCCCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 77777888888888888888888877776654 89752 346999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhccCCChhhHhh--HHhhHHHHHHHHhhCCCCCC
Q 019132 145 KLASSLGPRFYANIFKCKHISETGAQQ--MLLDTQAVKTILLDIPSLGR 191 (345)
Q Consensus 145 Klv~~fi~~f~~~I~k~kpis~~gaeQ--LLLD~~sLK~~Ll~LP~~~~ 191 (345)
++-.+|-.++-.++-++..-++.|.+. ++-|+.-..+.|-+|+..+.
T Consensus 83 ~Vf~~fk~~l~~~~~~~~i~~~~G~q~g~v~~Dv~ff~~~L~~L~g~~d 131 (141)
T 3n1e_A 83 RINASYKLHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQALKGLKD 131 (141)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSSSHHHHHHHHHHHHHHHHHHTSTTCTT
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHHhcccCCCCc
Confidence 999999999999999998888888887 78999999999999998764
No 8
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}
Probab=73.42 E-value=72 Score=31.23 Aligned_cols=165 Identities=10% Similarity=0.070 Sum_probs=108.0
Q ss_pred hhhHHHHHHH----HHHHHHHHHHhhhchHHhhcccCCCCCCCccCCCcCccHHHHHHHHhhhHHHHhh-hccHHHHHHH
Q 019132 68 VQDEFSAVIT----KALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGS-LLSPIYFQFF 142 (345)
Q Consensus 68 e~D~F~~vis----k~I~~LV~~le~~le~a~~~m~~~nW~~~e~VgD~S~YV~~i~~~L~~~~~~i~~-~L~~~Y~~~f 142 (345)
-+..|.++.- +--+.+++.++..+.+.+-.|........-. .+.+..+..|.+.|.......+. .+.+....++
T Consensus 137 ~r~~l~~L~~~~~e~IY~~~i~~lkk~L~~ilP~~~~~~~~k~~~-~~~~~s~~~Il~~L~~~~~~L~~~~V~p~li~Ql 215 (386)
T 3mmi_A 137 YLNDLENETLKVFDKIYSTWLVKFMKHASAHIEIFDMVLNEKLFK-NSGDEKFAKLFTFLNEFDAVLCKFQVVDSMHTKI 215 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTCGGGSS-SCCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcccccccccccccC-CCCccCHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3444444444 4455666666666666554443322221111 24556799999999999999887 5689999999
Q ss_pred HHHHHHHHHHHHHHHhH-hccCCChhhHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhcCCc
Q 019132 143 LDKLASSLGPRFYANIF-KCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPV 221 (345)
Q Consensus 143 cDKlv~~fi~~f~~~I~-k~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~sP~ 221 (345)
+..+-.-+.....|.|. |-.-.+---|.|+..-++.|+.-..+ ..+ . ...++..+-...++|+.|.
T Consensus 216 fsQLF~fIna~lFN~LLlRr~~cs~s~G~qIr~NLs~LEeW~~~--~l~-~----------a~~~L~~L~QA~~LLQ~~K 282 (386)
T 3mmi_A 216 FNDTLKYLNVMLFNDLITKCPALNWKYGYEVDRNIERLVSWFEP--RIE-D----------VRPNLIQIIQAVKILQLKI 282 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHHHTT--TSS-C----------CGGGGHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhHHHHHHHHccCcccCcchHHHHHhhHHHHHHHHHh--ccH-H----------HHHHHHHHHHHHHHHccCC
Confidence 99999888899999985 33446777999999999999988876 211 1 1146778888888888884
Q ss_pred h--hHHHHHHhhCCCCCHHHHHHHHhh
Q 019132 222 D--SVADTYRALLPEGTPMEFQRILEL 246 (345)
Q Consensus 222 e--~~ve~Y~~L~~d~S~~~FqkIL~L 246 (345)
. .-+++-..+.+.-|+...++||.+
T Consensus 283 ~t~~Di~~i~~~C~~Lsp~QL~kIL~~ 309 (386)
T 3mmi_A 283 SNLNEFKLLFDFWYALNPAQIQAILLK 309 (386)
T ss_dssp CCHHHHHHHHTTCCSSCHHHHHHHHHT
T ss_pred CCHHHHHHHHHhcccCCHHHHHHHHHh
Confidence 2 122223333344455555555554
No 9
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=50.40 E-value=38 Score=23.62 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=32.7
Q ss_pred hhHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhH
Q 019132 167 TGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLK 215 (345)
Q Consensus 167 ~gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLK 215 (345)
+.+++|..|++.++..+..-.. .+....++.++.++|.=++
T Consensus 4 m~~eeL~~DL~El~~Ll~~AkR--------~rVk~~L~~ei~~lE~ei~ 44 (50)
T 2a26_A 4 MASEELQKDLEEVKVLLEKATR--------KRVRDALTAEKSKIETEIK 44 (50)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCS--------HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999866544 4667788899999986554
No 10
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=33.37 E-value=12 Score=35.97 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=13.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhcC
Q 019132 239 EFQRILELKGLKKADQQTILDDFNKHG 265 (345)
Q Consensus 239 ~FqkIL~LKGl~k~eq~~lle~f~~~~ 265 (345)
...+++..+.+ .++++.++.+....
T Consensus 367 ~~~~i~~~~~~--~~~~~~~~~~~~~~ 391 (449)
T 3iot_A 367 NAAAMATLEKL--MKAFESLKSFQQQQ 391 (449)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHTC---
T ss_pred HHHHHhhhHHH--HHHHHHHHhhcccc
Confidence 34566666655 55667777776443
No 11
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=32.78 E-value=1.2e+02 Score=22.27 Aligned_cols=61 Identities=18% Similarity=0.049 Sum_probs=45.8
Q ss_pred HHHHhHHHHHHHhHHhcCCchhHHHHHHhhCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHhcCC
Q 019132 202 FVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDFNKHGP 266 (345)
Q Consensus 202 ~V~~~~~klE~lLKvL~sP~e~~ve~Y~~L~~d~S~~~FqkIL~LKGl~k~eq~~lle~f~~~~~ 266 (345)
........+..++|+|..|...-+-.+..- +..+..++...+ |+.++-....|....+.|-
T Consensus 5 ~~~~~~~~~~~~~~~l~~~~r~~Il~~L~~-~~~~~~ela~~l---~is~~tvs~~L~~L~~~Gl 65 (98)
T 3jth_A 5 DMEQNSAKAVVLLKAMANERRLQILCMLHN-QELSVGELCAKL---QLSQSALSQHLAWLRRDGL 65 (98)
T ss_dssp HHHHHHHHHHHHHHHHCSHHHHHHHHHTTT-SCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTS
T ss_pred HHhHhHHHHHHHHHHcCCHHHHHHHHHHhc-CCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCC
Confidence 345567788999999998875444444433 556778887777 8999999999999987765
No 12
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=32.44 E-value=1e+02 Score=22.54 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=35.1
Q ss_pred hhHHHHHHhhCCC-CCHHHHHHHHhhcCCCHHHHHHHHHHHHh
Q 019132 222 DSVADTYRALLPE-GTPMEFQRILELKGLKKADQQTILDDFNK 263 (345)
Q Consensus 222 e~~ve~Y~~L~~d-~S~~~FqkIL~LKGl~k~eq~~lle~f~~ 263 (345)
+.|++.+..|-+| .++.-.-+++...|+....+...|+.|+-
T Consensus 16 ~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~ 58 (64)
T 1irz_A 16 NKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV 58 (64)
T ss_dssp HHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 5689999888656 56777778888899999999999999984
No 13
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=32.38 E-value=3.6e+02 Score=26.18 Aligned_cols=180 Identities=11% Similarity=0.089 Sum_probs=119.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhch----HHhhcccCC-------CCC----CCccCCCcCccHHHHHHHHhhhHHHHhh-
Q 019132 69 QDEFSAVITKALVTLVLGLETKFD----NEMAGMTRV-------PWG----SLESVGDQSEYVNGINMILTSSIPVLGS- 132 (345)
Q Consensus 69 ~D~F~~visk~I~~LV~~le~~le----~a~~~m~~~-------nW~----~~e~VgD~S~YV~~i~~~L~~~~~~i~~- 132 (345)
+..|.+++.+.-+.+++.++..+. |++.+-... .|+ ... ...+.-+..|.+.|......++.
T Consensus 144 ~~~L~~l~~~iy~~li~~l~k~L~p~l~paIl~~~~~~~~~~~~~~~~~~k~~~--~~~~~~~~~Il~~L~~~~~~L~~~ 221 (419)
T 2f6h_X 144 KDDFEALSYNIYNIWLKKLQKQLQKKAINAVVISESLPGFSAGETSGFLNKIFA--NTEEYTMDDILTFFNSIYWCMKSF 221 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSTTTTC-----------------CCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccccccccccccccc--CCCccCHHHHHHHHHHHHHHHHHc
Confidence 445666666666677777766665 444332211 121 110 12235789999999999999887
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHhHhc-cCCChhhHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHH
Q 019132 133 LLSPIYFQFFLDKLASSLGPRFYANIFKC-KHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAE 211 (345)
Q Consensus 133 ~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~-kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE 211 (345)
.+.+.+.+.++..+...+.....|.|.-= .-.+---|.|+..-+..|+.-+.+--. .....++..+-
T Consensus 222 ~V~~~l~~Q~fsQlf~~In~~lFN~LL~r~~~cs~s~G~qIr~nls~Le~W~~~~~l------------~~a~~~L~~l~ 289 (419)
T 2f6h_X 222 HIENEVFHAVVTTLLNYVDAICFNELIMKRNFLSWKRGLQLNYNVTRLEEWCKTHGL------------TDGTECLQHLI 289 (419)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHTTC------------TTHHHHTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhHHHHHhhHHHHHHHHHHcCC------------hhHHHHHHHHH
Confidence 56899999999999999999999999533 446667899999999999988866422 12455688888
Q ss_pred HHhHHhcCCch--hHHHHHHhhCCCCCHHHHHHHHhh-------cCCCHHHHHHHHHHHH
Q 019132 212 ALLKVILSPVD--SVADTYRALLPEGTPMEFQRILEL-------KGLKKADQQTILDDFN 262 (345)
Q Consensus 212 ~lLKvL~sP~e--~~ve~Y~~L~~d~S~~~FqkIL~L-------KGl~k~eq~~lle~f~ 262 (345)
..+++|+.+.. .-.+.-..+.+.-|+....+||.+ ++++..=...+-+.-+
T Consensus 290 Qa~~lLq~~k~~~~d~~~i~~~C~~Ln~~Ql~~il~~Y~~d~~e~~v~~~~i~~v~~~~~ 349 (419)
T 2f6h_X 290 QTAKLLQVRKYTIEDIDILRGICYSLTPAQLQKLISQYQVADYESPIPQEILRYVADIVK 349 (419)
T ss_dssp HHHHHTTSCCSSHHHHHHHHHHTTTSCHHHHHHHHHHCCCCTTSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCchhhHHHHHHHhhcCCHHHHHHHHHhCCCccCCCCCCHHHHHHHHHHHh
Confidence 99999998752 223333455567788999999988 3555544444443333
No 14
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=27.90 E-value=74 Score=20.49 Aligned_cols=27 Identities=11% Similarity=0.217 Sum_probs=23.3
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 019132 238 MEFQRILELKGLKKADQQTILDDFNKH 264 (345)
Q Consensus 238 ~~FqkIL~LKGl~k~eq~~lle~f~~~ 264 (345)
.-|=.||.|.|+...+++.++.+.+..
T Consensus 7 naFYevLh~~nLtEeQrn~yI~slkdd 33 (34)
T 1l6x_B 7 RRFYEALHDPNLNEEQRNAKIKSIRDD 33 (34)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCCHHHHHhHHHHHhcc
Confidence 357789999999999999999998753
No 15
>1ysm_A Calcyclin-binding protein; helix-turn-helix, metal binding protein; NMR {Mus musculus} SCOP: a.2.16.1
Probab=26.50 E-value=1.5e+02 Score=22.36 Aligned_cols=41 Identities=24% Similarity=0.224 Sum_probs=33.3
Q ss_pred HhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHh
Q 019132 169 AQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVI 217 (345)
Q Consensus 169 aeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL 217 (345)
+++|.+|++.|+.++..-.. .+....++.++.++|.=++.+
T Consensus 5 ~eeL~~DLeEl~~Ll~~AkR--------~rVk~~L~~ei~~lE~ei~~~ 45 (77)
T 1ysm_A 5 LEELQKDLEEVKVLLEKSTR--------KRLRDTLTSEKSKIETELKNK 45 (77)
T ss_dssp HHHHHHHHHHHHHHHHHTTT--------TTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccc--------HHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999866544 356789999999999766654
No 16
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=25.34 E-value=1.6e+02 Score=21.26 Aligned_cols=60 Identities=23% Similarity=0.257 Sum_probs=43.2
Q ss_pred HHhHHHHHHHhHHhcCCchhHHHHHHhhCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHhcCC
Q 019132 204 SREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDFNKHGP 266 (345)
Q Consensus 204 ~~~~~klE~lLKvL~sP~e~~ve~Y~~L~~d~S~~~FqkIL~LKGl~k~eq~~lle~f~~~~~ 266 (345)
...++.+..++|.|..|...-+..+..--+..+..++.+.+ |++++-....+....+.|-
T Consensus 8 ~~~~~~~~~~~~~l~~~~~~~il~~l~~~~~~s~~ela~~l---~is~~tvs~~l~~L~~~gl 67 (99)
T 3cuo_A 8 QASAEQAAALLKAMSHPKRLLILCMLSGSPGTSAGELTRIT---GLSASATSQHLARMRDEGL 67 (99)
T ss_dssp GGGHHHHHHHHHHHCSHHHHHHHHHHTTCCSEEHHHHHHHH---CCCHHHHHHHHHHHHHTTS
T ss_pred HhhHHHHHHHHHHhCChHHHHHHHHHHhCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCC
Confidence 45677888999999888654444443322235667777766 7899999999999987765
No 17
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=23.87 E-value=42 Score=21.46 Aligned_cols=15 Identities=7% Similarity=0.113 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhhhhh
Q 019132 44 SGDLAESVSKIIDSQ 58 (345)
Q Consensus 44 i~qLeekl~e~id~~ 58 (345)
++|||+|+.+.+...
T Consensus 2 MnQLEdKVEell~~~ 16 (33)
T 2wq1_A 2 MKQLEDKIEENTSKI 16 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhh
Confidence 589999999988643
No 18
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=23.67 E-value=2.4e+02 Score=21.37 Aligned_cols=59 Identities=12% Similarity=0.138 Sum_probs=44.1
Q ss_pred HHhHHHHHHHhHHhcCCchhHHHHHHhhCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHhcCC
Q 019132 204 SREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDFNKHGP 266 (345)
Q Consensus 204 ~~~~~klE~lLKvL~sP~e~~ve~Y~~L~~d~S~~~FqkIL~LKGl~k~eq~~lle~f~~~~~ 266 (345)
...+..+..++|.|+.|...-+-.+..- +..|..+..+.| |+.++-....|....+.|-
T Consensus 16 ~~~~~~~~~~~~~l~~~~~~~il~~L~~-~~~s~~ela~~l---~is~stvsr~l~~Le~~Gl 74 (119)
T 2lkp_A 16 SQAAAQVASTLQALATPSRLMILTQLRN-GPLPVTDLAEAI---GMEQSAVSHQLRVLRNLGL 74 (119)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHH-CCCCHHHHHHHH---SSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH-CCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCC
Confidence 4567889999999998865444444333 568888888777 7899999998888877654
No 19
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=21.85 E-value=2.6e+02 Score=20.99 Aligned_cols=58 Identities=9% Similarity=0.049 Sum_probs=42.6
Q ss_pred HhHHHHHHHhHHhcCCchhHHHHHHhhCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHhcCC
Q 019132 205 REMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDFNKHGP 266 (345)
Q Consensus 205 ~~~~klE~lLKvL~sP~e~~ve~Y~~L~~d~S~~~FqkIL~LKGl~k~eq~~lle~f~~~~~ 266 (345)
..+..+..++|.|..|...-+-.+.. -+..+..++...+ |+.++-....|....+.|-
T Consensus 11 ~~~~~~~~~~~~l~~~~r~~IL~~L~-~~~~~~~ela~~l---~is~stvs~~L~~L~~~Gl 68 (106)
T 1r1u_A 11 DTLERVTEIFKALGDYNRIRIMELLS-VSEASVGHISHQL---NLSQSNVSHQLKLLKSVHL 68 (106)
T ss_dssp HHHHHHHHHHHHTCSHHHHHHHHHHH-HCCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH-hCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCC
Confidence 34677888999999886544444443 3456788877776 7899999999999987664
No 20
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=21.58 E-value=82 Score=20.51 Aligned_cols=31 Identities=6% Similarity=0.039 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHhhhhhccCCcccchhhhHHHHHHH
Q 019132 43 TSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVIT 77 (345)
Q Consensus 43 Ti~qLeekl~e~id~~~kekIdf~~e~D~F~~vis 77 (345)
.++|||+|+.+.+... -++.++-...-.+..
T Consensus 2 RMnQLE~KVEeLl~~~----~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKL----WHLKNKVARLKKKNA 32 (36)
T ss_dssp CHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHh----HHHHHHHHHHHHHhc
Confidence 4689999999998643 234444444444333
No 21
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=21.25 E-value=2.7e+02 Score=21.06 Aligned_cols=58 Identities=10% Similarity=0.023 Sum_probs=42.3
Q ss_pred HhHHHHHHHhHHhcCCchhHHHHHHhhCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHhcCC
Q 019132 205 REMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDFNKHGP 266 (345)
Q Consensus 205 ~~~~klE~lLKvL~sP~e~~ve~Y~~L~~d~S~~~FqkIL~LKGl~k~eq~~lle~f~~~~~ 266 (345)
..+..+..++|.|..|...-+..+.. -+..+..++...+ |++++-....|....+.|-
T Consensus 10 ~~~~~~~~~~~al~~~~r~~IL~~L~-~~~~s~~eLa~~l---gis~stvs~~L~~L~~~Gl 67 (108)
T 2kko_A 10 ALLDQVARVGKALANGRRLQILDLLA-QGERAVEAIATAT---GMNLTTASANLQALKSGGL 67 (108)
T ss_dssp HHHHHHHHHHHHHTTSTTHHHHHHHT-TCCEEHHHHHHHH---TCCHHHHHHHHHHHHHHTS
T ss_pred hhHHHHHHHHHHhCCHHHHHHHHHHH-cCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCC
Confidence 45667889999999997543333332 2456677777766 7899999999999987765
No 22
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=20.27 E-value=1e+02 Score=22.41 Aligned_cols=57 Identities=12% Similarity=0.229 Sum_probs=39.9
Q ss_pred HHHHHHHh--HHhcCCchhHHHHHHhhCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHhcCC
Q 019132 207 MSKAEALL--KVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDFNKHGP 266 (345)
Q Consensus 207 ~~klE~lL--KvL~sP~e~~ve~Y~~L~~d~S~~~FqkIL~LKGl~k~eq~~lle~f~~~~~ 266 (345)
|+.++.++ |++..|...-+-.+..--+..+..++.+.+ |++++-....+....+.|-
T Consensus 1 m~~~~~~~~~~~l~~~~~~~iL~~L~~~~~~~~~ela~~l---~is~~tvs~~l~~L~~~gl 59 (100)
T 1ub9_A 1 MEELKEIMKSHILGNPVRLGIMIFLLPRRKAPFSQIQKVL---DLTPGNLDSHIRVLERNGL 59 (100)
T ss_dssp CHHHHHHHTCHHHHSHHHHHHHHHHHHHSEEEHHHHHHHT---TCCHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHhcccccCChHHHHHHHHHHhcCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCC
Confidence 34566677 688888654444443323456777777766 8999999999999987765
No 23
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=20.23 E-value=55 Score=21.08 Aligned_cols=15 Identities=7% Similarity=0.206 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhhhh
Q 019132 44 SGDLAESVSKIIDSQ 58 (345)
Q Consensus 44 i~qLeekl~e~id~~ 58 (345)
++|||+|+.+.+...
T Consensus 3 MnQledKvEel~~~~ 17 (34)
T 2r2v_A 3 LKQVADKLEEVASKL 17 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHh
Confidence 689999999998754
Done!