Query 019132
Match_columns 345
No_of_seqs 117 out of 201
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 11:24:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019132.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019132hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hjqa1 a.140.3.2 (A:50-103) H 20.4 26 0.0019 22.7 2.1 20 245-264 12-31 (54)
2 d2i1qa1 a.60.4.1 (A:5-64) DNA 20.1 32 0.0023 22.7 2.7 23 242-264 33-55 (60)
3 d2bgwa1 a.60.2.5 (A:160-229) D 17.9 67 0.0049 21.4 4.1 61 175-263 6-67 (70)
4 d2cpga_ a.43.1.3 (A:) Transcri 16.4 80 0.0058 19.4 3.6 27 238-264 15-42 (43)
5 d1ub9a_ a.4.5.28 (A:) Hypothet 15.2 66 0.0048 22.4 3.7 57 207-266 1-59 (100)
6 d1uw4b_ a.118.1.14 (B:) Regula 15.1 2.8E+02 0.02 22.4 9.0 56 112-167 56-120 (248)
7 d1pzna1 a.60.4.1 (A:35-95) DNA 15.1 33 0.0024 22.6 1.7 25 241-265 34-58 (61)
8 d2f8aa1 c.47.1.10 (A:12-195) G 13.3 14 0.001 30.0 -0.8 30 29-58 25-57 (184)
9 d1rh2a_ a.26.1.3 (A:) Interfer 13.2 2.6E+02 0.019 21.5 7.2 39 178-216 89-127 (154)
10 d1deeg_ a.8.1.1 (G:) Immunoglo 12.4 99 0.0072 19.8 3.4 26 239-264 5-30 (51)
No 1
>d2hjqa1 a.140.3.2 (A:50-103) Hypothetical protein YqbF {Bacillus subtilis [TaxId: 1423]}
Probab=20.41 E-value=26 Score=22.70 Aligned_cols=20 Identities=35% Similarity=0.825 Sum_probs=17.2
Q ss_pred hhcCCCHHHHHHHHHHHHhc
Q 019132 245 ELKGLKKADQQTILDDFNKH 264 (345)
Q Consensus 245 ~LKGl~k~eq~~lle~f~~~ 264 (345)
+|||++|.+|.+++-...+.
T Consensus 12 elk~m~k~~~e~ii~~lg~~ 31 (54)
T d2hjqa1 12 ELKGMNKAEHESIISNLGRN 31 (54)
T ss_dssp HHHTCCHHHHHHHHHHHTCC
T ss_pred HHhhcccccchhHHHhcCCC
Confidence 68999999999999888743
No 2
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=20.05 E-value=32 Score=22.66 Aligned_cols=23 Identities=4% Similarity=0.252 Sum_probs=19.1
Q ss_pred HHHhhcCCCHHHHHHHHHHHHhc
Q 019132 242 RILELKGLKKADQQTILDDFNKH 264 (345)
Q Consensus 242 kIL~LKGl~k~eq~~lle~f~~~ 264 (345)
.|.+++|+.+.-..++++.+++.
T Consensus 33 eL~~i~Gi~~~~A~~i~~~ar~~ 55 (60)
T d2i1qa1 33 ELTDIEGISEKAAAKMIMGARDL 55 (60)
T ss_dssp HHHTSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHH
Confidence 46678999999999999998865
No 3
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]}
Probab=17.87 E-value=67 Score=21.36 Aligned_cols=61 Identities=15% Similarity=0.266 Sum_probs=36.8
Q ss_pred hHHHHHHH-HhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhcCCchhHHHHHHhhCCCCCHHHHHHHHhhcCCCHHH
Q 019132 175 DTQAVKTI-LLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKAD 253 (345)
Q Consensus 175 D~~sLK~~-Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~sP~e~~ve~Y~~L~~d~S~~~FqkIL~LKGl~k~e 253 (345)
|+..++-+ |..+|..|+. -.+.+-++|+-++.+++ ...+.|.+++|+...-
T Consensus 6 ~~~~~~~~~L~~IpgIG~~------~a~~L~~~F~s~~~l~~----------------------As~eeL~~v~GIG~~~ 57 (70)
T d2bgwa1 6 DVREWQLYILQSFPGIGRR------TAERILERFGSLERFFT----------------------ASKAEISKVEGIGEKR 57 (70)
T ss_dssp HHHHHHHHHHHTSTTCCHH------HHHHHHHHHSSHHHHTT----------------------CCHHHHHHSTTCCHHH
T ss_pred CHHHHHHHHHcCCCCcCHH------HHHHHHHHhCCHHHHHH----------------------cCHHHHHcCCCCCHHH
Confidence 44445444 4478886632 24555555665555542 1234566789998888
Q ss_pred HHHHHHHHHh
Q 019132 254 QQTILDDFNK 263 (345)
Q Consensus 254 q~~lle~f~~ 263 (345)
...+.+.|+.
T Consensus 58 A~~I~~~~~~ 67 (70)
T d2bgwa1 58 AEEIKKILMT 67 (70)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhC
Confidence 8888877764
No 4
>d2cpga_ a.43.1.3 (A:) Transcriptional repressor CopG {Streptococcus agalactiae [TaxId: 1311]}
Probab=16.37 E-value=80 Score=19.42 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=22.3
Q ss_pred HHHHHHHhhcCCCHHHHHHH-HHHHHhc
Q 019132 238 MEFQRILELKGLKKADQQTI-LDDFNKH 264 (345)
Q Consensus 238 ~~FqkIL~LKGl~k~eq~~l-le~f~~~ 264 (345)
++++|+-.=||+.|+..-++ +|.|++.
T Consensus 15 ~~lek~a~e~g~sksa~~~~ale~y~~~ 42 (43)
T d2cpga_ 15 ENLEKMAREMGLSKSAMISVALENYKKG 42 (43)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCccHHHHHHHHHHhhccC
Confidence 57788888899999886666 9999875
No 5
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=15.21 E-value=66 Score=22.36 Aligned_cols=57 Identities=14% Similarity=0.244 Sum_probs=41.6
Q ss_pred HHHHHHHhH--HhcCCchhHHHHHHhhCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHhcCC
Q 019132 207 MSKAEALLK--VILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDFNKHGP 266 (345)
Q Consensus 207 ~~klE~lLK--vL~sP~e~~ve~Y~~L~~d~S~~~FqkIL~LKGl~k~eq~~lle~f~~~~~ 266 (345)
|+.+..++| ++.+|..--+..|..--++.+..++.+-+ |+.++-....+....+.|-
T Consensus 1 m~~l~ei~~~~~l~~p~r~~IL~~L~~~~~~~~~eLa~~l---~is~~~vs~~l~~L~~~gl 59 (100)
T d1ub9a_ 1 MEELKEIMKSHILGNPVRLGIMIFLLPRRKAPFSQIQKVL---DLTPGNLDSHIRVLERNGL 59 (100)
T ss_dssp CHHHHHHHTCHHHHSHHHHHHHHHHHHHSEEEHHHHHHHT---TCCHHHHHHHHHHHHHTTS
T ss_pred ChhHHHHHHHHhcCCHHHHHHHHHhccCCCeeHHHHHHHH---hhccccccHHHHHHhhhce
Confidence 456666776 78888765666666555667776766644 8899999999999987765
No 6
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.15 E-value=2.8e+02 Score=22.36 Aligned_cols=56 Identities=7% Similarity=0.046 Sum_probs=27.3
Q ss_pred cCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHH---------HHHHHHHHHHhHhccCCChh
Q 019132 112 QSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLA---------SSLGPRFYANIFKCKHISET 167 (345)
Q Consensus 112 ~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv---------~~fi~~f~~~I~k~kpis~~ 167 (345)
.+++...+...|....+.+...+-+.....|...+- ..-..+|++.+|+.+=++.-
T Consensus 56 ~i~~yA~l~a~L~~~~~~f~~~~id~l~e~f~~~~e~~~~~~~~r~~~~v~figeLy~~~~v~~~ 120 (248)
T d1uw4b_ 56 SIHCVANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESA 120 (248)
T ss_dssp GHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcHH
Confidence 345556666666655555544332222222211110 01234678888877766654
No 7
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=15.10 E-value=33 Score=22.58 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=20.3
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhcC
Q 019132 241 QRILELKGLKKADQQTILDDFNKHG 265 (345)
Q Consensus 241 qkIL~LKGl~k~eq~~lle~f~~~~ 265 (345)
+.|.+.+|+.+.-...+++.+++..
T Consensus 34 ~eL~~i~Gi~~~~A~~i~~~ar~~~ 58 (61)
T d1pzna1 34 IELKEVAGISEGTALKIIQAARKAA 58 (61)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHc
Confidence 3466779999999999999988753
No 8
>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.27 E-value=14 Score=29.98 Aligned_cols=30 Identities=17% Similarity=0.068 Sum_probs=20.3
Q ss_pred hhhhhcccHHHHHHh---HHHHHHHHHHhhhhh
Q 019132 29 VICYIVNSAEYCHKT---SGDLAESVSKIIDSQ 58 (345)
Q Consensus 29 ~~C~IINTADYC~~T---i~qLeekl~e~id~~ 58 (345)
.+++|.|||.+|--| ..+|++...+.-+..
T Consensus 25 KvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g 57 (184)
T d2f8aa1 25 KVLLIENVASLGGTTVRDYTQMNELQRRLGPRG 57 (184)
T ss_dssp SEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT
T ss_pred CEEEEEEecccCCcchhhhHHHHHhhhhhcccc
Confidence 478899999998544 456666665554443
No 9
>d1rh2a_ a.26.1.3 (A:) Interferon-alpha 2b {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.20 E-value=2.6e+02 Score=21.50 Aligned_cols=39 Identities=8% Similarity=0.027 Sum_probs=22.8
Q ss_pred HHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHH
Q 019132 178 AVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKV 216 (345)
Q Consensus 178 sLK~~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKv 216 (345)
.|++++.+--........+..+...|++.|.+|...||=
T Consensus 89 ~Le~Cl~~~~~~~~~~~~~e~~~L~lk~YF~rI~~yLk~ 127 (154)
T d1rh2a_ 89 DLEACVIQGVGVTETPLMNEDSILAVRKYFQRITLYLKE 127 (154)
T ss_pred HHHHHHHHhcccccCCcCCCcchHHHHHHHHHHHHHHHh
Confidence 366666443221111222334567799999999888874
No 10
>d1deeg_ a.8.1.1 (G:) Immunoglobulin-binding protein A modules {Staphylococcus aureus [TaxId: 1280]}
Probab=12.41 E-value=99 Score=19.84 Aligned_cols=26 Identities=19% Similarity=0.469 Sum_probs=23.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhc
Q 019132 239 EFQRILELKGLKKADQQTILDDFNKH 264 (345)
Q Consensus 239 ~FqkIL~LKGl~k~eq~~lle~f~~~ 264 (345)
-|-.||.|+++...+++.++.+.+..
T Consensus 5 Afyeil~lpnl~eeQrn~fI~sLkdd 30 (51)
T d1deeg_ 5 AFYEILNMPNLNEAQRNGFIQSLKDD 30 (51)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHHHHC
T ss_pred hHHHHHhCCCCCHHHHHHHHHHHhhC
Confidence 57789999999999999999999965
Done!