BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019134
(345 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 127/250 (50%), Gaps = 15/250 (6%)
Query: 42 QIVKACEEYGFFKVVNHGVSLELMNKLEAEAVKFFSQSQSEKDKASPPDPFG----YGSK 97
++ KA ++G ++NHG+ +LM +++ +FFS S EK+K + G YGSK
Sbjct: 69 ELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSK 128
Query: 98 RIG-PNGDVGWIEYLLLNANPQLTSHKTLAIFQERSQKFRRAVDEYIVAVKKMSYQVMEL 156
+G + W +Y A P+ + L+I+ + + A EY ++ ++ +V +
Sbjct: 129 LANNASGQLEWEDYFFHLAYPE--EKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 186
Query: 157 MADGLNITPRNVMSKLLKDERSDSCFRLNHYPPCPDHQLQALSGRNLIGFGEHTDPQIIS 216
++ GL + P + ++ E ++N+YP CP +L +G HTD ++
Sbjct: 187 LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELA-------LGVEAHTDVSALT 239
Query: 217 VLRSNNTSGLQIQLRDGTWVSVPSDQSSFFLNVGDALQVMTNGRFKSVKHRVLADTNKSR 276
+ N GLQ+ +G WV+ S +++GD L++++NG++KS+ HR L + K R
Sbjct: 240 FILHNMVPGLQL-FYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVR 298
Query: 277 ISMIYFGGPP 286
IS F PP
Sbjct: 299 ISWAVFCEPP 308
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 127/250 (50%), Gaps = 15/250 (6%)
Query: 42 QIVKACEEYGFFKVVNHGVSLELMNKLEAEAVKFFSQSQSEKDKASPPDPFG----YGSK 97
++ KA ++G ++NHG+ +LM +++ +FFS S EK+K + G YGSK
Sbjct: 68 ELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSK 127
Query: 98 RIG-PNGDVGWIEYLLLNANPQLTSHKTLAIFQERSQKFRRAVDEYIVAVKKMSYQVMEL 156
+G + W +Y A P+ + L+I+ + + A EY ++ ++ +V +
Sbjct: 128 LANNASGQLEWEDYFFHLAYPE--EKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 185
Query: 157 MADGLNITPRNVMSKLLKDERSDSCFRLNHYPPCPDHQLQALSGRNLIGFGEHTDPQIIS 216
++ GL + P + ++ E ++N+YP CP +L +G HTD ++
Sbjct: 186 LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELA-------LGVEAHTDVSALT 238
Query: 217 VLRSNNTSGLQIQLRDGTWVSVPSDQSSFFLNVGDALQVMTNGRFKSVKHRVLADTNKSR 276
+ N GLQ+ +G WV+ S +++GD L++++NG++KS+ HR L + K R
Sbjct: 239 FILHNMVPGLQL-FYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVR 297
Query: 277 ISMIYFGGPP 286
IS F PP
Sbjct: 298 ISWAVFCEPP 307
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 125/250 (50%), Gaps = 15/250 (6%)
Query: 42 QIVKACEEYGFFKVVNHGVSLELMNKLEAEAVKFFSQSQSEKDKASPPDPFG----YGSK 97
++ KA ++G ++NHG+ +L +++ +FFS S EK+K + G YGSK
Sbjct: 69 ELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSK 128
Query: 98 RIG-PNGDVGWIEYLLLNANPQLTSHKTLAIFQERSQKFRRAVDEYIVAVKKMSYQVMEL 156
+G + W +Y A P+ + L+I+ + + A EY ++ ++ +V +
Sbjct: 129 LANNASGQLEWEDYFFHLAYPE--EKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 186
Query: 157 MADGLNITPRNVMSKLLKDERSDSCFRLNHYPPCPDHQLQALSGRNLIGFGEHTDPQIIS 216
++ GL + P + ++ E ++N+YP CP +L +G HTD ++
Sbjct: 187 LSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELA-------LGVEAHTDVSALT 239
Query: 217 VLRSNNTSGLQIQLRDGTWVSVPSDQSSFFLNVGDALQVMTNGRFKSVKHRVLADTNKSR 276
+ N GLQ+ +G WV+ S ++GD L++++NG++KS+ HR L + K R
Sbjct: 240 FILHNXVPGLQL-FYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVR 298
Query: 277 ISMIYFGGPP 286
IS F PP
Sbjct: 299 ISWAVFCEPP 308
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 131/259 (50%), Gaps = 16/259 (6%)
Query: 29 IPEVDLTDPAAKTQIVK-ACEEYGFFKVVNHGVSLELMNKLEAEAVKFFSQSQSEKDKAS 87
+ +V+ + AA + +K ACE +GFF++VNHG+ E+ + +E + + ++ K
Sbjct: 9 LDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKEL 68
Query: 88 PPDPFGYGSKRIGPNGDVGWIEYLLLNANPQLTSHKTLAIFQERSQKFRRAVDEYIVAVK 147
G + D W L P ++ + +++R ++ ++
Sbjct: 69 VASKALEGVQ--AEVTDXDWESTFFLKHLPI----SNISEVPDLDEEYREVXRDFAKRLE 122
Query: 148 KMSYQVMELMADGLNITPRNVMSKLLKDERSDSCFRLNHYPPCPDHQLQALSGRNLIGFG 207
K++ ++++L+ + L + + + + + ++++YPPCP L + G
Sbjct: 123 KLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDL-------IKGLR 175
Query: 208 EHTDPQ-IISVLRSNNTSGLQIQLRDGTWVSVPSDQSSFFLNVGDALQVMTNGRFKSVKH 266
HTD II + + + SGLQ+ L+DG W+ VP + S +N+GD L+V+TNG++KSV H
Sbjct: 176 AHTDAGGIILLFQDDKVSGLQL-LKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXH 234
Query: 267 RVLADTNKSRISMIYFGGP 285
RV+A + +R S+ F P
Sbjct: 235 RVIAQKDGARXSLASFYNP 253
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 61/111 (54%), Gaps = 11/111 (9%)
Query: 180 SCFRLNHYPP-CPDHQLQALSGRNLIGFGEHTDPQIISVLRSNNTSGLQIQLRDGTWVSV 238
+ R+ HYPP D + A+ H D +I+VL + N GLQ++ +DG+W+ V
Sbjct: 150 TLLRILHYPPXTGDEEXGAIRA------AAHEDINLITVLPTANEPGLQVKAKDGSWLDV 203
Query: 239 PSDQSSFFLNVGDALQVMTNGRFKSVKHRVL----ADTNKSRISMIYFGGP 285
PSD + +N+GD LQ ++G F S HRV+ D KSRIS+ F P
Sbjct: 204 PSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHP 254
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 95/237 (40%), Gaps = 19/237 (8%)
Query: 42 QIVKACEEYGFFKVVNHGVSLELMNKLEAEAVKFFS-------QSQSEKDKASPPDPFGY 94
++ + E YGF + ++ + ++ A FF+ Q K A PFG
Sbjct: 25 ELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPFGV 84
Query: 95 GSKRIGPNGDVG--WIEYLLLNANPQLTSHKTLAIFQERSQKFRRAVDEYIVAVKKMSYQ 152
+ + + D+ W L + +H ++ F+ V ++ +
Sbjct: 85 ETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDGXGGK 144
Query: 153 VMELMADGLNITPRNVMSKLLKDERSDSCFRLNHYPPCPDHQLQALSGRNLIGFGEHTDP 212
V+E +A L + R+ ++D +S RL HYPP P +G H D
Sbjct: 145 VLEAIATYLKLE-RDFFKPTVQD--GNSVLRLLHYPPIPKDATGVRAG-------AHGDI 194
Query: 213 QIISVLRSNNTSGLQIQLRDGTWVSVPSDQSSFFLNVGDALQVMTNGRFKSVKHRVL 269
I++L GL++ RDG W+ + +N+GD L+ +TN S HRV+
Sbjct: 195 NTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVV 251
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 128/289 (44%), Gaps = 47/289 (16%)
Query: 29 IPEVDLT-----DPAAKT----QIVKACEEYGFFKVVNHGVSLELMNKLEAE-------- 71
+P++D++ D AAK QI A + GFF VNHG++++ +++ E
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSITPE 68
Query: 72 -----AVKFFSQSQSEKDKASPPDPFGYGSKRIGPNGDVGWIEYLLLNAN-----PQL-- 119
A++ +++ ++ +A GY + G + LN N P++
Sbjct: 69 EKWDLAIRAYNKEHQDQVRA------GY---YLSIPGKKAVESFCYLNPNFTPDHPRIQA 119
Query: 120 -TSHKTLAIFQERSQK--FRRAVDEYIVAVKKMSYQVMELMADGLNITPRNVMSKLLKDE 176
T + ++ + ++ F+ ++Y V +S +++ A L N ++ K +
Sbjct: 120 KTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALG-KEENFFARHFKPD 178
Query: 177 RSDSCFRLNHYP---PCPDHQLQALSGRNLIGFGEHTDPQIISVLRSNNTSGLQIQLRDG 233
+ + L YP P P+ ++ + + F H D +I+VL +N LQ++ G
Sbjct: 179 DTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAG 238
Query: 234 TWVSVPSDQSSFFLNVGDALQVMTNGRFKSVKHRVLADTNKSRISMIYF 282
+ + +D + + +N G + +TN +K+ HRV N R S+ +F
Sbjct: 239 -YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKW-VNAERQSLPFF 285
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 128/289 (44%), Gaps = 47/289 (16%)
Query: 29 IPEVDLT-----DPAAKT----QIVKACEEYGFFKVVNHGVSLELMNKLEAE-------- 71
+P++D++ D AAK QI A + GFF VNHG++++ +++ E
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSITPE 68
Query: 72 -----AVKFFSQSQSEKDKASPPDPFGYGSKRIGPNGDVGWIEYLLLNAN-----PQL-- 119
A++ +++ ++ +A GY + G + LN N P++
Sbjct: 69 EKWDLAIRAYNKEHQDQVRA------GY---YLSIPGKKAVESFCYLNPNFTPDHPRIQA 119
Query: 120 -TSHKTLAIFQERSQK--FRRAVDEYIVAVKKMSYQVMELMADGLNITPRNVMSKLLKDE 176
T + ++ + ++ F+ ++Y V +S +++ A L N ++ K +
Sbjct: 120 KTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALG-KEENFFARHFKPD 178
Query: 177 RSDSCFRLNHYP---PCPDHQLQALSGRNLIGFGEHTDPQIISVLRSNNTSGLQIQLRDG 233
+ + L YP P P+ ++ + + F H D +I+VL +N LQ++ G
Sbjct: 179 DTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAG 238
Query: 234 TWVSVPSDQSSFFLNVGDALQVMTNGRFKSVKHRVLADTNKSRISMIYF 282
+ + +D + + +N G + +TN +K+ HRV N R S+ +F
Sbjct: 239 -YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKW-VNAERQSLPFF 285
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 13/113 (11%)
Query: 182 FRLNHYPPCPDHQLQALSGRNLIGFGEHTDPQIISVLR----SNNTSGLQIQLRDGTWVS 237
R ++P P+H+ + + H D ++++++ +N LQ ++ G +
Sbjct: 159 LRFRYFPQVPEHRS---AEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEV-GGAFTD 214
Query: 238 VPSDQSSFFLNVGDALQVMTNGRFKSVKHRVLAD-----TNKSRISMIYFGGP 285
+P + + G ++T G+ K+ +H V A SR S ++F P
Sbjct: 215 LPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRP 267
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 13/113 (11%)
Query: 182 FRLNHYPPCPDHQLQALSGRNLIGFGEHTDPQIISVLR----SNNTSGLQIQLRDGTWVS 237
R ++P P+H+ + + H D ++++++ +N LQ ++ G +
Sbjct: 159 LRFRYFPQVPEHRS---AEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEV-GGAFTD 214
Query: 238 VPSDQSSFFLNVGDALQVMTNGRFKSVKHRVLAD-----TNKSRISMIYFGGP 285
+P + + G ++T G+ K+ +H V A SR S ++F P
Sbjct: 215 LPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRP 267
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 13/113 (11%)
Query: 182 FRLNHYPPCPDHQLQALSGRNLIGFGEHTDPQIISVLR----SNNTSGLQIQLRDGTWVS 237
R ++P P+H+ + + H D ++++++ +N LQ ++ G +
Sbjct: 159 LRFRYFPQVPEHRS---AEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEV-GGAFTD 214
Query: 238 VPSDQSSFFLNVGDALQVMTNGRFKSVKHRVLAD-----TNKSRISMIYFGGP 285
+P + + G ++T G+ K+ +H V A SR S ++F P
Sbjct: 215 LPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRP 267
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 13/113 (11%)
Query: 182 FRLNHYPPCPDHQLQALSGRNLIGFGEHTDPQIISVLR----SNNTSGLQIQLRDGTWVS 237
R ++P P+H+ + + H D ++++++ +N LQ ++ G +
Sbjct: 179 LRFRYFPQVPEHRS---AEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEV-GGAFTD 234
Query: 238 VPSDQSSFFLNVGDALQVMTNGRFKSVKHRVLAD-----TNKSRISMIYFGGP 285
+P + + G ++T G+ K+ +H V A SR S ++F P
Sbjct: 235 LPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRP 287
>pdb|3TRK|A Chain A, Structure Of The Chikungunya Virus Nsp2 Protease
Length = 324
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 15/52 (28%)
Query: 182 FRLNHYPPCPDH--QLQALSGRNL-------------IGFGEHTDPQIISVL 218
FR++HY C DH +LQ L G +L G+ + T ++I VL
Sbjct: 223 FRIHHYQQCVDHAXKLQXLGGDSLRLLKPGGSLLIRAYGYADRTSERVICVL 274
>pdb|1VRB|A Chain A, Crystal Structure Of Putative Asparaginyl Hydroxylase
(2636534) From Bacillus Subtilis At 2.60 A Resolution
pdb|1VRB|B Chain B, Crystal Structure Of Putative Asparaginyl Hydroxylase
(2636534) From Bacillus Subtilis At 2.60 A Resolution
pdb|1VRB|C Chain C, Crystal Structure Of Putative Asparaginyl Hydroxylase
(2636534) From Bacillus Subtilis At 2.60 A Resolution
pdb|1VRB|D Chain D, Crystal Structure Of Putative Asparaginyl Hydroxylase
(2636534) From Bacillus Subtilis At 2.60 A Resolution
Length = 342
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 15/73 (20%)
Query: 221 NNTSGLQIQLRDGTWVSVPSDQSSFFLNVG-------------DALQVMTNGRFK--SVK 265
N T G + L G W S SDQ++ LN+ +++++ RF+ +V
Sbjct: 221 NLTPGTXLYLPRGLWHSTKSDQATLALNITFGQPAWLDLXLAALRKKLISDNRFRELAVN 280
Query: 266 HRVLADTNKSRIS 278
H+ L +++KS ++
Sbjct: 281 HQSLHESSKSELN 293
>pdb|2FHD|A Chain A, Crystal Structure Of Crb2 Tandem Tudor Domains
pdb|2FHD|B Chain B, Crystal Structure Of Crb2 Tandem Tudor Domains
pdb|2FHD|C Chain C, Crystal Structure Of Crb2 Tandem Tudor Domains
Length = 153
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 227 QIQLRDGTWVSVPSDQ-SSFFLNVGDALQVMTNGRFKSVKHRVLADTNKSRISMI 280
++Q D T +V S+Q FFL GD +Q G+ K + TN+ ++S+I
Sbjct: 43 KVQFDDATXSTVNSNQIKRFFLKKGDVVQSTRLGKIKHTVVKTFRSTNE-QLSLI 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,654,864
Number of Sequences: 62578
Number of extensions: 363535
Number of successful extensions: 797
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 770
Number of HSP's gapped (non-prelim): 22
length of query: 345
length of database: 14,973,337
effective HSP length: 100
effective length of query: 245
effective length of database: 8,715,537
effective search space: 2135306565
effective search space used: 2135306565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)