BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019135
         (345 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TC9|A Chain A, Crystal Structure Of A Hypothetical Hydrolase (Bt_3476)
           From Bacteroides Thetaiotaomicron Vpi-5482 At 2.23 A
           Resolution
 pdb|3TC9|B Chain B, Crystal Structure Of A Hypothetical Hydrolase (Bt_3476)
           From Bacteroides Thetaiotaomicron Vpi-5482 At 2.23 A
           Resolution
          Length = 430

 Score = 35.4 bits (80), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 3   DKGNLYVADTLNLAIRKIGDAG-VTTIAG-GKSNVAGFRDGP-SEDAKFSNDFDVVYVRP 59
           D+ + Y  D  N  IR +   G VTT AG G +  +G+ DG   ++A+F++   +VY   
Sbjct: 350 DEYDFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEE 409

Query: 60  TCSLLVIDRGNAALRQISLNQ 80
                + DR N  +R+I   +
Sbjct: 410 RECFFIGDRENRRIRKIGYEE 430


>pdb|3HRP|A Chain A, Crystal Structure Of Structural Genomics Protein Of
           Unknown Function (np_812590.1) From Bacteroides
           Thetaiotaomicron Vpi-5482 At 1.70 A Resolution
          Length = 409

 Score = 30.4 bits (67), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 1   MDDKGNLYVADTL-NLAIRK--IGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVY 56
           +D+ GN Y+ D      +RK  I D  V+T+AG + +VA   DG   +A F+  +D+ Y
Sbjct: 330 VDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAG-QVDVASQIDGTPLEATFNYPYDICY 387


>pdb|3KYA|A Chain A, Crystal Structure Of Putative Phosphatase (Np_812416.1)
           From Bacteroides Thetaiotaomicron Vpi-5482 At 1.77 A
           Resolution
          Length = 496

 Score = 28.9 bits (63), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 9/86 (10%)

Query: 6   NLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPS---------EDAKFSNDFDVVY 56
           + Y  D LN  +RK+   G+ +   G+       DG           E A+F +   +VY
Sbjct: 392 DFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVY 451

Query: 57  VRPTCSLLVIDRGNAALRQISLNQDD 82
                   V D+    +R IS  Q++
Sbjct: 452 DDVKEXFYVHDQVGHTIRTISXEQEE 477


>pdb|1Q7S|A Chain A, Crystal Structure Of Bit1
 pdb|1Q7S|B Chain B, Crystal Structure Of Bit1
          Length = 117

 Score = 28.1 bits (61), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 18/35 (51%)

Query: 10  ADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSE 44
           A  L L +  I DAG T IA G   V G   GP++
Sbjct: 71  AKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPAD 105


>pdb|2WPG|A Chain A, Sucrose Hydrolase
          Length = 637

 Score = 28.1 bits (61), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 162 FGQLIIDLSKLALEAMGSMFLNFVPFRFRSSGTKGNLTPLRDT----LRMPEDEAAPPVV 217
           FG++ + + +LA   + +  L+   + ++  GT     P   T    LR   D  AP VV
Sbjct: 260 FGEMALAMLELANLGVEAFRLDSTAYLWKRPGTNCMNQPEAHTILVALRAVADIVAPSVV 319

Query: 218 QRQKSAVPLSE 228
            + ++ VP++E
Sbjct: 320 MKAEAIVPMAE 330


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.133    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,792,535
Number of Sequences: 62578
Number of extensions: 446542
Number of successful extensions: 779
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 775
Number of HSP's gapped (non-prelim): 12
length of query: 345
length of database: 14,973,337
effective HSP length: 100
effective length of query: 245
effective length of database: 8,715,537
effective search space: 2135306565
effective search space used: 2135306565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)