BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019135
         (345 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P62576|NANA_STRR6 Sialidase A OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
           GN=nanA PE=1 SV=1
          Length = 1035

 Score = 33.1 bits (74), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 7/76 (9%)

Query: 77  SLNQDDCEYQYNSISPTDILMVVGAVLVGYVTCMLQQGFGPFFFSRTQQPSESEFNEETE 136
           S+ +  C Y    +S   + M+VGAV+ G    + Q+G        ++QP  +E     E
Sbjct: 19  SVQERKCRYSIRKLSVGAVSMIVGAVVFGTSPVLAQEG-------ASEQPLANETQLSGE 71

Query: 137 IKELSNKEKPIPIVES 152
              L++ EK  P  E+
Sbjct: 72  SSTLTDTEKSQPSSET 87


>sp|P62575|NANA_STREE Sialidase A OS=Streptococcus pneumoniae GN=nanA PE=1 SV=1
          Length = 1035

 Score = 33.1 bits (74), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 7/76 (9%)

Query: 77  SLNQDDCEYQYNSISPTDILMVVGAVLVGYVTCMLQQGFGPFFFSRTQQPSESEFNEETE 136
           S+ +  C Y    +S   + M+VGAV+ G    + Q+G        ++QP  +E     E
Sbjct: 19  SVQERKCRYSIRKLSVGAVSMIVGAVVFGTSPVLAQEG-------ASEQPLANETQLSGE 71

Query: 137 IKELSNKEKPIPIVES 152
              L++ EK  P  E+
Sbjct: 72  SSTLTDTEKSQPSSET 87


>sp|Q54U87|DHKA_DICDI Hybrid signal transduction histidine kinase A OS=Dictyostelium
            discoideum GN=dhkA PE=1 SV=1
          Length = 2150

 Score = 31.6 bits (70), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 28/50 (56%)

Query: 189  FRSSGTKGNLTPLRDTLRMPEDEAAPPVVQRQKSAVPLSETHQVRTPGTG 238
             R +GT  ++T  +D  R+  ++ A     + KSA   + +H+VRTP +G
Sbjct: 1355 LRMAGTLRDMTSRKDMQRLILEKEAAEEANKAKSAFVATVSHEVRTPLSG 1404


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.133    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,836,539
Number of Sequences: 539616
Number of extensions: 5885020
Number of successful extensions: 12162
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 12149
Number of HSP's gapped (non-prelim): 47
length of query: 345
length of database: 191,569,459
effective HSP length: 118
effective length of query: 227
effective length of database: 127,894,771
effective search space: 29032113017
effective search space used: 29032113017
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)