Query 019135
Match_columns 345
No_of_seqs 241 out of 1169
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 06:59:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019135.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019135hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02919 haloacid dehalogenase 99.2 1.1E-10 2.4E-15 129.0 13.1 112 1-115 575-707 (1057)
2 PLN02919 haloacid dehalogenase 99.2 9.1E-11 2E-15 129.7 10.3 79 1-82 811-891 (1057)
3 PF01436 NHL: NHL repeat; Int 98.6 4.7E-08 1E-12 63.7 3.5 28 48-76 1-28 (28)
4 KOG4659 Uncharacterized conser 98.4 3.4E-07 7.4E-12 101.9 5.8 78 1-80 600-692 (1899)
5 PF08450 SGL: SMP-30/Gluconola 98.3 2.1E-06 4.6E-11 78.2 8.1 96 1-115 93-207 (246)
6 PF08450 SGL: SMP-30/Gluconola 98.1 1.3E-05 2.9E-10 73.0 9.2 70 2-84 142-218 (246)
7 KOG4659 Uncharacterized conser 97.8 7.4E-05 1.6E-09 84.0 8.6 81 4-87 418-510 (1899)
8 PF03088 Str_synth: Strictosid 97.7 0.00011 2.4E-09 60.3 6.3 63 1-80 5-88 (89)
9 PF01436 NHL: NHL repeat; Int 97.6 5.2E-05 1.1E-09 49.3 2.3 20 1-20 9-28 (28)
10 COG3386 Gluconolactonase [Carb 97.4 0.0013 2.9E-08 64.4 10.9 89 1-107 118-228 (307)
11 COG3391 Uncharacterized conser 96.9 0.011 2.5E-07 58.6 12.0 93 2-113 124-229 (381)
12 TIGR02604 Piru_Ver_Nterm putat 96.6 0.0072 1.6E-07 59.5 7.8 60 1-77 131-211 (367)
13 COG3386 Gluconolactonase [Carb 96.4 0.028 6E-07 55.2 10.5 76 2-84 171-248 (307)
14 COG3391 Uncharacterized conser 95.9 0.085 1.8E-06 52.5 11.5 96 2-115 82-184 (381)
15 TIGR02604 Piru_Ver_Nterm putat 95.9 0.03 6.5E-07 55.2 8.0 61 1-80 21-100 (367)
16 KOG1520 Predicted alkaloid syn 95.1 0.085 1.8E-06 53.6 8.1 105 4-122 126-250 (376)
17 PF00058 Ldl_recept_b: Low-den 94.8 0.063 1.4E-06 37.8 4.6 38 5-58 1-41 (42)
18 COG4257 Vgb Streptogramin lyas 94.3 0.18 3.9E-06 50.1 8.0 84 1-101 69-166 (353)
19 PF10282 Lactonase: Lactonase, 93.3 0.7 1.5E-05 45.0 10.2 109 2-118 95-219 (345)
20 smart00135 LY Low-density lipo 93.2 0.21 4.7E-06 33.1 4.7 35 47-81 7-41 (43)
21 TIGR03866 PQQ_ABC_repeats PQQ- 92.9 2.6 5.7E-05 37.5 12.5 59 5-81 1-63 (300)
22 PF06977 SdiA-regulated: SdiA- 92.8 0.47 1E-05 45.4 7.9 58 3-70 181-242 (248)
23 PRK11028 6-phosphogluconolacto 92.6 1.1 2.3E-05 42.6 10.0 65 49-115 126-199 (330)
24 KOG1214 Nidogen and related ba 92.2 0.4 8.7E-06 53.4 7.4 88 6-110 1038-1130(1289)
25 PF03088 Str_synth: Strictosid 92.2 0.33 7E-06 40.0 5.2 62 53-116 2-82 (89)
26 PF00058 Ldl_recept_b: Low-den 91.8 0.48 1E-05 33.3 5.1 38 61-98 1-41 (42)
27 PF03022 MRJP: Major royal jel 91.6 0.34 7.5E-06 46.9 5.6 53 1-67 193-253 (287)
28 PRK11028 6-phosphogluconolacto 90.9 2 4.4E-05 40.7 10.0 67 2-79 134-205 (330)
29 KOG4499 Ca2+-binding protein R 90.5 1.7 3.6E-05 42.7 9.0 67 5-81 170-243 (310)
30 TIGR03118 PEPCTERM_chp_1 conse 89.4 1.4 3.1E-05 44.3 7.7 67 12-93 219-295 (336)
31 PF10282 Lactonase: Lactonase, 89.0 2.2 4.8E-05 41.5 8.8 101 2-115 152-269 (345)
32 KOG1214 Nidogen and related ba 88.9 1.4 3.1E-05 49.3 8.0 81 6-102 1081-1168(1289)
33 PF01731 Arylesterase: Arylest 86.8 2.3 4.9E-05 34.8 6.2 32 47-79 52-84 (86)
34 KOG1520 Predicted alkaloid syn 86.6 1 2.2E-05 46.0 4.9 51 47-98 217-273 (376)
35 PF05787 DUF839: Bacterial pro 84.7 4.7 0.0001 42.7 8.9 80 4-84 361-473 (524)
36 PF07995 GSDH: Glucose / Sorbo 83.2 2.6 5.6E-05 41.3 5.9 56 4-75 270-331 (331)
37 PF02239 Cytochrom_D1: Cytochr 82.8 5.9 0.00013 39.7 8.4 91 6-115 7-102 (369)
38 TIGR03866 PQQ_ABC_repeats PQQ- 82.6 12 0.00027 33.2 9.6 47 50-97 250-298 (300)
39 PF07995 GSDH: Glucose / Sorbo 82.3 2.2 4.8E-05 41.8 5.0 50 48-99 1-58 (331)
40 COG4257 Vgb Streptogramin lyas 81.9 8.7 0.00019 38.6 8.9 69 1-86 240-313 (353)
41 PF06739 SBBP: Beta-propeller 78.5 1.4 3.1E-05 30.5 1.7 21 49-70 13-33 (38)
42 TIGR03032 conserved hypothetic 76.7 5.8 0.00013 40.1 6.0 49 48-98 202-251 (335)
43 KOG4499 Ca2+-binding protein R 74.9 22 0.00048 35.2 9.2 68 47-116 156-236 (310)
44 COG3204 Uncharacterized protei 74.3 12 0.00026 37.5 7.5 57 4-70 244-304 (316)
45 PF14269 Arylsulfotran_2: Aryl 73.3 61 0.0013 31.8 12.0 78 2-83 152-244 (299)
46 COG2133 Glucose/sorbosone dehy 73.1 12 0.00025 38.7 7.3 65 5-80 332-398 (399)
47 TIGR02658 TTQ_MADH_Hv methylam 73.0 38 0.00083 34.3 10.8 58 5-81 13-87 (352)
48 COG2706 3-carboxymuconate cycl 72.9 34 0.00074 34.9 10.3 111 1-115 96-215 (346)
49 TIGR03118 PEPCTERM_chp_1 conse 71.3 23 0.00049 35.9 8.6 85 5-99 152-253 (336)
50 TIGR03606 non_repeat_PQQ dehyd 70.2 43 0.00093 35.2 10.7 69 2-79 38-124 (454)
51 PF06977 SdiA-regulated: SdiA- 70.2 13 0.00029 35.7 6.5 64 47-112 169-242 (248)
52 TIGR02276 beta_rpt_yvtn 40-res 69.6 18 0.00038 23.9 5.3 38 60-97 3-41 (42)
53 TIGR02658 TTQ_MADH_Hv methylam 69.2 54 0.0012 33.3 10.9 35 48-83 104-140 (352)
54 smart00135 LY Low-density lipo 65.7 8.8 0.00019 25.1 3.2 21 4-24 20-40 (43)
55 PF03022 MRJP: Major royal jel 64.9 15 0.00033 35.6 5.9 57 52-109 189-253 (287)
56 TIGR03606 non_repeat_PQQ dehyd 64.1 14 0.0003 38.7 5.8 33 48-81 29-61 (454)
57 COG3211 PhoX Predicted phospha 60.5 33 0.00071 37.3 7.7 25 46-71 497-521 (616)
58 TIGR03032 conserved hypothetic 59.2 25 0.00055 35.7 6.3 26 4-29 212-239 (335)
59 PF13449 Phytase-like: Esteras 58.2 1.1E+02 0.0025 29.8 10.6 23 2-24 93-121 (326)
60 PF02239 Cytochrom_D1: Cytochr 57.5 38 0.00083 34.0 7.4 56 7-81 51-110 (369)
61 KOG1215 Low-density lipoprotei 50.8 44 0.00094 37.0 7.1 84 4-102 491-579 (877)
62 PF13360 PQQ_2: PQQ-like domai 48.5 83 0.0018 27.7 7.3 60 3-83 35-99 (238)
63 KOG3567 Peptidylglycine alpha- 42.4 21 0.00046 37.8 2.9 35 46-81 464-498 (501)
64 KOG1215 Low-density lipoprotei 42.3 1.6E+02 0.0034 32.7 9.8 92 5-112 449-544 (877)
65 PF13449 Phytase-like: Esteras 41.5 32 0.00069 33.6 3.9 33 50-83 86-124 (326)
66 KOG3567 Peptidylglycine alpha- 40.3 48 0.001 35.3 5.1 106 1-113 175-298 (501)
67 COG2706 3-carboxymuconate cycl 39.4 3E+02 0.0065 28.3 10.4 101 1-113 152-266 (346)
68 COG3823 Glutamine cyclotransfe 38.6 86 0.0019 30.7 6.1 62 4-68 185-248 (262)
69 PF05586 Ant_C: Anthrax recept 38.5 32 0.0007 29.0 2.9 38 202-245 20-57 (95)
70 COG1520 FOG: WD40-like repeat 37.7 1.3E+02 0.0028 29.5 7.4 69 1-83 65-134 (370)
71 KOG2055 WD40 repeat protein [G 31.3 2.3E+02 0.005 30.4 8.3 41 43-83 347-389 (514)
72 cd00200 WD40 WD40 domain, foun 28.8 2.6E+02 0.0057 23.4 7.0 10 4-13 198-207 (289)
73 smart00108 B_lectin Bulb-type 28.0 2.1E+02 0.0046 23.4 6.2 20 51-71 87-106 (114)
74 PF14269 Arylsulfotran_2: Aryl 27.4 3.5E+02 0.0076 26.5 8.5 27 59-85 269-296 (299)
75 PF02333 Phytase: Phytase; In 27.0 2.5E+02 0.0055 29.0 7.7 68 2-81 217-292 (381)
76 cd00028 B_lectin Bulb-type man 24.6 2.2E+02 0.0047 23.4 5.7 14 57-70 93-106 (116)
77 TIGR02608 delta_60_rpt delta-6 24.0 1.1E+02 0.0023 23.2 3.3 33 52-85 4-44 (55)
78 PF05096 Glu_cyclase_2: Glutam 20.9 5.8E+02 0.013 25.2 8.5 65 5-83 140-207 (264)
79 COG4946 Uncharacterized protei 20.4 8.2E+02 0.018 26.8 10.0 21 4-24 340-360 (668)
No 1
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.20 E-value=1.1e-10 Score=129.03 Aligned_cols=112 Identities=25% Similarity=0.272 Sum_probs=84.9
Q ss_pred CCC-CCCEEEEeCCCCEEEEEcCCc-eEEEecCCCCCCCCCCCCcCccccCCCcccEEECCCC-cEEEEeCCCCEEEEEe
Q 019135 1 MDD-KGNLYVADTLNLAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGNAALRQIS 77 (345)
Q Consensus 1 VD~-~GnIYVADt~NhrIRkId~dG-VsTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG-~LYVADtgNhrIRKis 77 (345)
||. +|+|||||+.||+|+++|.+| +.+.+|+. +..|+.||....+.|+.|.+|| +|++| .|||+|++||+||+|+
T Consensus 575 vd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~-g~~G~~dG~~~~a~f~~P~GIa-vd~~gn~LYVaDt~n~~Ir~id 652 (1057)
T PLN02919 575 IDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGST-GEEGLRDGSFEDATFNRPQGLA-YNAKKNLLYVADTENHALREID 652 (1057)
T ss_pred EECCCCeEEEEECCCCeEEEEeCCCCEEEEEccC-CCcCCCCCchhccccCCCcEEE-EeCCCCEEEEEeCCCceEEEEe
Confidence 354 588999999999999999999 55556542 3467788888889999999999 67665 4999999999999999
Q ss_pred CCCCe-eeeccc-----------------CCCCcceEEEeccceeEEEEeeccccc
Q 019135 78 LNQDD-CEYQYN-----------------SISPTDILMVVGAVLVGYVTCMLQQGF 115 (345)
Q Consensus 78 ~dG~~-~t~~~~-----------------~~~p~gI~~~~~a~~lgYvs~~~~~~~ 115 (345)
+.+.. .++.+. ...|.+++++-- .+..||+..++++|
T Consensus 653 ~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~-~g~LyVad~~~~~I 707 (1057)
T PLN02919 653 FVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV-NEKVYIAMAGQHQI 707 (1057)
T ss_pred cCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC-CCeEEEEECCCCeE
Confidence 87654 333211 135677776642 34788888887776
No 2
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.16 E-value=9.1e-11 Score=129.66 Aligned_cols=79 Identities=35% Similarity=0.573 Sum_probs=70.2
Q ss_pred CCCCCCEEEEeCCCCEEEEEcCCc--eEEEecCCCCCCCCCCCCcCccccCCCcccEEECCCCcEEEEeCCCCEEEEEeC
Q 019135 1 MDDKGNLYVADTLNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISL 78 (345)
Q Consensus 1 VD~~GnIYVADt~NhrIRkId~dG--VsTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG~LYVADtgNhrIRKis~ 78 (345)
+|.+|+|||||+.||+|+++|.++ +++++|. |..|+.||.+..++|+.|.+|+ ++++|.|||+|++||+||+|++
T Consensus 811 vd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~--G~~G~~dG~~~~a~l~~P~GIa-vd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 811 CAKDGQIYVADSYNHKIKKLDPATKRVTTLAGT--GKAGFKDGKALKAQLSEPAGLA-LGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred EeCCCcEEEEECCCCEEEEEECCCCeEEEEecc--CCcCCCCCcccccccCCceEEE-EeCCCCEEEEECCCCEEEEEEC
Confidence 478899999999999999999876 6788874 4568889988899999999999 7999999999999999999999
Q ss_pred CCCe
Q 019135 79 NQDD 82 (345)
Q Consensus 79 dG~~ 82 (345)
+...
T Consensus 888 ~~~~ 891 (1057)
T PLN02919 888 NKGE 891 (1057)
T ss_pred CCCc
Confidence 7753
No 3
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.59 E-value=4.7e-08 Score=63.66 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=26.3
Q ss_pred cCCCcccEEECCCCcEEEEeCCCCEEEEE
Q 019135 48 FSNDFDVVYVRPTCSLLVIDRGNAALRQI 76 (345)
Q Consensus 48 Fn~P~gIA~VDsdG~LYVADtgNhrIRKi 76 (345)
|+.|.+|| ++++|+|||+|++||||++|
T Consensus 1 f~~P~gva-v~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVA-VDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEE-EETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEE-EeCCCCEEEEECCCCEEEEC
Confidence 68899999 78999999999999999986
No 4
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.39 E-value=3.4e-07 Score=101.86 Aligned_cols=78 Identities=29% Similarity=0.548 Sum_probs=64.7
Q ss_pred CCCCCCEEEEeCC---CCEEEEEcCCc-eEEEecCCCCCCCC-----------CCCCcCccccCCCcccEEECCCCcEEE
Q 019135 1 MDDKGNLYVADTL---NLAIRKIGDAG-VTTIAGGKSNVAGF-----------RDGPSEDAKFSNDFDVVYVRPTCSLLV 65 (345)
Q Consensus 1 VD~~GnIYVADt~---NhrIRkId~dG-VsTiAGg~~g~~G~-----------~DG~a~~A~Fn~P~gIA~VDsdG~LYV 65 (345)
|..+|.||||++. -||||++..|| +..+||+.+ .|.+ .|+.|.+|+|+.|..+| |.++|.|||
T Consensus 600 vg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S-~C~C~~~~~cdcfs~~~~~At~A~lnsp~ala-VsPdg~v~I 677 (1899)
T KOG4659|consen 600 VGTDGALYVAESDGRRINRVRKLSTDGTISILAGAKS-PCSCDVAACCDCFSLRDVAATQAKLNSPYALA-VSPDGDVII 677 (1899)
T ss_pred ecCCceEEEEeccchhhhheEEeccCceEEEecCCCC-CCCcccccCCccccccchhhhccccCCcceEE-ECCCCcEEE
Confidence 4578999999988 47899999999 889998642 2222 14568899999999999 999999999
Q ss_pred EeCCCCEEEEEeCCC
Q 019135 66 IDRGNAALRQISLNQ 80 (345)
Q Consensus 66 ADtgNhrIRKis~dG 80 (345)
||.+|.|||+++..-
T Consensus 678 AD~gN~rIr~Vs~~~ 692 (1899)
T KOG4659|consen 678 ADSGNSRIRKVSARM 692 (1899)
T ss_pred ecCCchhhhhhhhcc
Confidence 999999999987543
No 5
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.30 E-value=2.1e-06 Score=78.18 Aligned_cols=96 Identities=21% Similarity=0.214 Sum_probs=68.0
Q ss_pred CCCCCCEEEEeCCC--------CEEEEEcCCc-eEEEecCCCCCCCCCCCCcCccccCCCcccEEECCCC-cEEEEeCCC
Q 019135 1 MDDKGNLYVADTLN--------LAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGN 70 (345)
Q Consensus 1 VD~~GnIYVADt~N--------hrIRkId~dG-VsTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG-~LYVADtgN 70 (345)
||++|+|||+|... .+|.+++++| +..++. .|..|++|+ ++++| .|||+|+.+
T Consensus 93 vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~----------------~~~~pNGi~-~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 93 VDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVAD----------------GLGFPNGIA-FSPDGKTLYVADSFN 155 (246)
T ss_dssp E-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEE----------------EESSEEEEE-EETTSSEEEEEETTT
T ss_pred EcCCCCEEEEecCCCccccccccceEEECCCCeEEEEec----------------CcccccceE-ECCcchheeeccccc
Confidence 58899999999875 5699999997 444432 377799999 67777 599999999
Q ss_pred CEEEEEeCCC--C-ee---ee---cccCCCCcceEEEeccceeEEEEeeccccc
Q 019135 71 AALRQISLNQ--D-DC---EY---QYNSISPTDILMVVGAVLVGYVTCMLQQGF 115 (345)
Q Consensus 71 hrIRKis~dG--~-~~---t~---~~~~~~p~gI~~~~~a~~lgYvs~~~~~~~ 115 (345)
++|.+|+++. . .. .+ ....+.|-|++++. -+-.||+.+.+.+|
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~--~G~l~va~~~~~~I 207 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS--DGNLWVADWGGGRI 207 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT--TS-EEEEEETTTEE
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC--CCCEEEEEcCCCEE
Confidence 9999999863 2 21 11 11223577888875 34679999977766
No 6
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.12 E-value=1.3e-05 Score=72.96 Aligned_cols=70 Identities=20% Similarity=0.195 Sum_probs=51.6
Q ss_pred CCCCC-EEEEeCCCCEEEEEcCC--c--e--EEEecCCCCCCCCCCCCcCccccCCCcccEEECCCCcEEEEeCCCCEEE
Q 019135 2 DDKGN-LYVADTLNLAIRKIGDA--G--V--TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALR 74 (345)
Q Consensus 2 D~~Gn-IYVADt~NhrIRkId~d--G--V--sTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG~LYVADtgNhrIR 74 (345)
+.+|. |||+|+.+++|++++.+ + + ..++.... .....|-+++ +|++|+||||+.++++|.
T Consensus 142 s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~------------~~~g~pDG~~-vD~~G~l~va~~~~~~I~ 208 (246)
T PF08450_consen 142 SPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFP------------GGPGYPDGLA-VDSDGNLWVADWGGGRIV 208 (246)
T ss_dssp ETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-S------------SSSCEEEEEE-EBTTS-EEEEEETTTEEE
T ss_pred CCcchheeecccccceeEEEeccccccceeeeeeEEEcC------------CCCcCCCcce-EcCCCCEEEEEcCCCEEE
Confidence 45664 99999999999999974 3 2 12221100 0113589998 899999999999999999
Q ss_pred EEeCCCCeee
Q 019135 75 QISLNQDDCE 84 (345)
Q Consensus 75 Kis~dG~~~t 84 (345)
+|+++|+...
T Consensus 209 ~~~p~G~~~~ 218 (246)
T PF08450_consen 209 VFDPDGKLLR 218 (246)
T ss_dssp EEETTSCEEE
T ss_pred EECCCccEEE
Confidence 9999998654
No 7
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=97.77 E-value=7.4e-05 Score=84.01 Aligned_cols=81 Identities=20% Similarity=0.264 Sum_probs=63.4
Q ss_pred CCCEEEEeCCCCEEEEEcC------Cc-eEEEecCC--C--CCCCCCCCC-cCccccCCCcccEEECCCCcEEEEeCCCC
Q 019135 4 KGNLYVADTLNLAIRKIGD------AG-VTTIAGGK--S--NVAGFRDGP-SEDAKFSNDFDVVYVRPTCSLLVIDRGNA 71 (345)
Q Consensus 4 ~GnIYVADt~NhrIRkId~------dG-VsTiAGg~--~--g~~G~~DG~-a~~A~Fn~P~gIA~VDsdG~LYVADtgNh 71 (345)
+|.|||+|...++|.++.. .+ ...+||.. | +...++||. |.+|+|.+|.||| +|.+|+||++|. -
T Consensus 418 dgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa-~dk~g~lYfaD~--t 494 (1899)
T KOG4659|consen 418 DGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIA-FDKMGNLYFADG--T 494 (1899)
T ss_pred CceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCcee-EccCCcEEEecc--c
Confidence 6889999999999999963 22 46778731 1 111245664 6789999999999 899999999995 7
Q ss_pred EEEEEeCCCCeeeecc
Q 019135 72 ALRQISLNQDDCEYQY 87 (345)
Q Consensus 72 rIRKis~dG~~~t~~~ 87 (345)
+||+|+.+|.+++..+
T Consensus 495 ~IR~iD~~giIstlig 510 (1899)
T KOG4659|consen 495 RIRVIDTTGIISTLIG 510 (1899)
T ss_pred EEEEeccCceEEEecc
Confidence 8999999998876543
No 8
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.67 E-value=0.00011 Score=60.29 Aligned_cols=63 Identities=21% Similarity=0.317 Sum_probs=47.3
Q ss_pred CCCC-CCEEEEeCC-----------------CCEEEEEcCCc--eEEEecCCCCCCCCCCCCcCccccCCCcccEEECCC
Q 019135 1 MDDK-GNLYVADTL-----------------NLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPT 60 (345)
Q Consensus 1 VD~~-GnIYVADt~-----------------NhrIRkId~dG--VsTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsd 60 (345)
||.+ |.||++|+. +.|+.++|+.. +++++.+ |..|+||| ++++
T Consensus 5 v~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~----------------L~fpNGVa-ls~d 67 (89)
T PF03088_consen 5 VDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG----------------LYFPNGVA-LSPD 67 (89)
T ss_dssp E-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE----------------ESSEEEEE-E-TT
T ss_pred EecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC----------------CCccCeEE-EcCC
Confidence 4666 999999974 57899999887 4555543 77899999 7778
Q ss_pred Cc-EEEEeCCCCEEEEEeCCC
Q 019135 61 CS-LLVIDRGNAALRQISLNQ 80 (345)
Q Consensus 61 G~-LYVADtgNhrIRKis~dG 80 (345)
+. |+|+++..+||.|+-+.|
T Consensus 68 ~~~vlv~Et~~~Ri~rywl~G 88 (89)
T PF03088_consen 68 ESFVLVAETGRYRILRYWLKG 88 (89)
T ss_dssp SSEEEEEEGGGTEEEEEESSS
T ss_pred CCEEEEEeccCceEEEEEEeC
Confidence 76 999999999999998877
No 9
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.56 E-value=5.2e-05 Score=49.28 Aligned_cols=20 Identities=40% Similarity=0.685 Sum_probs=18.4
Q ss_pred CCCCCCEEEEeCCCCEEEEE
Q 019135 1 MDDKGNLYVADTLNLAIRKI 20 (345)
Q Consensus 1 VD~~GnIYVADt~NhrIRkI 20 (345)
||++|+|||||+.||||+++
T Consensus 9 v~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 9 VDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EETTSEEEEEECCCTEEEEE
T ss_pred EeCCCCEEEEECCCCEEEEC
Confidence 57899999999999999986
No 10
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.41 E-value=0.0013 Score=64.39 Aligned_cols=89 Identities=13% Similarity=0.231 Sum_probs=63.9
Q ss_pred CCCCCCEEEEeCCC-----------CEEEEEcCCc-eEEEecCCCCCCCCCCCCcCccccCCCcccEEECCCC-cEEEEe
Q 019135 1 MDDKGNLYVADTLN-----------LAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVID 67 (345)
Q Consensus 1 VD~~GnIYVADt~N-----------hrIRkId~dG-VsTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG-~LYVAD 67 (345)
||.+|.+||.|..+ .+|++++++| +..+.-+ .+..|++|| .+++| .||++|
T Consensus 118 v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~---------------~~~~~NGla-~SpDg~tly~aD 181 (307)
T COG3386 118 VDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDD---------------DLTIPNGLA-FSPDGKTLYVAD 181 (307)
T ss_pred EcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecC---------------cEEecCceE-ECCCCCEEEEEe
Confidence 68899999998772 3688888766 4443321 267799999 68888 899999
Q ss_pred CCCCEEEEEeCC---CCee------eecccCCCCcceEEEeccceeEEE
Q 019135 68 RGNAALRQISLN---QDDC------EYQYNSISPTDILMVVGAVLVGYV 107 (345)
Q Consensus 68 tgNhrIRKis~d---G~~~------t~~~~~~~p~gI~~~~~a~~lgYv 107 (345)
+..++|.++..+ +... ......+.|-|+++|... ..|+
T Consensus 182 T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG--~lw~ 228 (307)
T COG3386 182 TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG--NLWV 228 (307)
T ss_pred CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC--CEEE
Confidence 999999999988 3321 111245788899988644 4554
No 11
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.011 Score=58.61 Aligned_cols=93 Identities=23% Similarity=0.219 Sum_probs=68.1
Q ss_pred CCCC-CEEEEeC--CCCEEEEEcCCc--e-EEEecCCCCCCCCCCCCcCccccCCCcccEEECCCCc-EEEEeCCCCEEE
Q 019135 2 DDKG-NLYVADT--LNLAIRKIGDAG--V-TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCS-LLVIDRGNAALR 74 (345)
Q Consensus 2 D~~G-nIYVADt--~NhrIRkId~dG--V-sTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG~-LYVADtgNhrIR 74 (345)
|.+| .+||+|. .|+.|.+||... + .++.-| +.|.+++ ++++|. +||+|..+++|-
T Consensus 124 ~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG-----------------~~P~~~a-~~p~g~~vyv~~~~~~~v~ 185 (381)
T COG3391 124 DPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG-----------------NTPTGVA-VDPDGNKVYVTNSDDNTVS 185 (381)
T ss_pred CCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC-----------------CCcceEE-ECCCCCeEEEEecCCCeEE
Confidence 4455 8999999 589999999887 2 223222 1579998 799998 999999999999
Q ss_pred EEeCCCCeeee-c-----ccCCCCcceEEEeccceeEEEEeeccc
Q 019135 75 QISLNQDDCEY-Q-----YNSISPTDILMVVGAVLVGYVTCMLQQ 113 (345)
Q Consensus 75 Kis~dG~~~t~-~-----~~~~~p~gI~~~~~a~~lgYvs~~~~~ 113 (345)
.|+..+..... . .....|.+|++.- ++...|+.+....
T Consensus 186 vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~-~g~~~yV~~~~~~ 229 (381)
T COG3391 186 VIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP-DGNRVYVANDGSG 229 (381)
T ss_pred EEeCCCcceeccccccccccCCCCceEEECC-CCCEEEEEeccCC
Confidence 99988876553 1 1123466666654 4468999988874
No 12
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.58 E-value=0.0072 Score=59.50 Aligned_cols=60 Identities=18% Similarity=0.312 Sum_probs=44.3
Q ss_pred CCCCCCEEEEeCCC-------------------CEEEEEcCCc--eEEEecCCCCCCCCCCCCcCccccCCCcccEEECC
Q 019135 1 MDDKGNLYVADTLN-------------------LAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRP 59 (345)
Q Consensus 1 VD~~GnIYVADt~N-------------------hrIRkId~dG--VsTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDs 59 (345)
++.+|.|||++..+ ..|.+++++| +..++.| |.+|.+|+ +++
T Consensus 131 ~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G----------------~rnp~Gl~-~d~ 193 (367)
T TIGR02604 131 WGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHG----------------FQNPYGHS-VDS 193 (367)
T ss_pred ECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecC----------------cCCCccce-ECC
Confidence 36789999988732 4688888887 3444432 67899999 689
Q ss_pred CCcEEEEeCCCCEEEEEe
Q 019135 60 TCSLLVIDRGNAALRQIS 77 (345)
Q Consensus 60 dG~LYVADtgNhrIRKis 77 (345)
+|+||++|..++..-.++
T Consensus 194 ~G~l~~tdn~~~~~~~i~ 211 (367)
T TIGR02604 194 WGDVFFCDNDDPPLCRVT 211 (367)
T ss_pred CCCEEEEccCCCceeEEc
Confidence 999999998766554444
No 13
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.39 E-value=0.028 Score=55.24 Aligned_cols=76 Identities=22% Similarity=0.159 Sum_probs=48.2
Q ss_pred CCCC-CEEEEeCCCCEEEEEcCCceEEEecCCCCCCCCCCCCcCccccCCCcccEEECCCCcEEEEeCCC-CEEEEEeCC
Q 019135 2 DDKG-NLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGN-AALRQISLN 79 (345)
Q Consensus 2 D~~G-nIYVADt~NhrIRkId~dGVsTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG~LYVADtgN-hrIRKis~d 79 (345)
+++| .+|+||+..++|.+++-+-.....++ ...+.+.. ..=-.|-+++ +|++|+||++-..+ .+|.+|+++
T Consensus 171 SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~---~~~~~~~~---~~~G~PDG~~-vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 171 SPDGKTLYVADTPANRIHRYDLDPATGPIGG---RRGFVDFD---EEPGLPDGMA-VDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred CCCCCEEEEEeCCCCeEEEEecCcccCccCC---cceEEEcc---CCCCCCCceE-EeCCCCEEEecccCCceEEEECCC
Confidence 4566 79999999999999986620000000 00000000 0002478898 89999999655555 599999999
Q ss_pred CCeee
Q 019135 80 QDDCE 84 (345)
Q Consensus 80 G~~~t 84 (345)
|+...
T Consensus 244 G~l~~ 248 (307)
T COG3386 244 GKLLG 248 (307)
T ss_pred CcEEE
Confidence 98653
No 14
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.93 E-value=0.085 Score=52.48 Aligned_cols=96 Identities=20% Similarity=0.185 Sum_probs=65.6
Q ss_pred CCCCC-EEEEeCCCCEEEEEcCCc--eEEEecCCCCCCCCCCCCcCccccCCCcccEEECCCC-cEEEEeC--CCCEEEE
Q 019135 2 DDKGN-LYVADTLNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDR--GNAALRQ 75 (345)
Q Consensus 2 D~~Gn-IYVADt~NhrIRkId~dG--VsTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG-~LYVADt--gNhrIRK 75 (345)
+..|+ +||.+..++.|.+||.+. +....+- | ..|.+++ ++.+| .+||+|. +|+.|.+
T Consensus 82 ~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-----G-----------~~P~~~~-~~~~~~~vYV~n~~~~~~~vsv 144 (381)
T COG3391 82 NPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-----G-----------LGPVGLA-VDPDGKYVYVANAGNGNNTVSV 144 (381)
T ss_pred CCCCCeEEEecCCCCeEEEEcCcccceeeEeee-----c-----------cCCceEE-ECCCCCEEEEEecccCCceEEE
Confidence 34455 999999999999999554 2222211 1 1699999 56666 9999999 5899999
Q ss_pred EeCCCCeeeecc-cCCCCcceEEEeccceeEEEEeeccccc
Q 019135 76 ISLNQDDCEYQY-NSISPTDILMVVGAVLVGYVTCMLQQGF 115 (345)
Q Consensus 76 is~dG~~~t~~~-~~~~p~gI~~~~~a~~lgYvs~~~~~~~ 115 (345)
|+......+... -...|.+++++- ++..+|++.....++
T Consensus 145 id~~t~~~~~~~~vG~~P~~~a~~p-~g~~vyv~~~~~~~v 184 (381)
T COG3391 145 IDAATNKVTATIPVGNTPTGVAVDP-DGNKVYVTNSDDNTV 184 (381)
T ss_pred EeCCCCeEEEEEecCCCcceEEECC-CCCeEEEEecCCCeE
Confidence 999876443332 223576666665 446889988444333
No 15
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.89 E-value=0.03 Score=55.18 Aligned_cols=61 Identities=18% Similarity=0.255 Sum_probs=42.6
Q ss_pred CCCCCCEEEEeCCC------------CEEEEEcC---Cce---EEEecCCCCCCCCCCCCcCccccCCCcccEEECCCCc
Q 019135 1 MDDKGNLYVADTLN------------LAIRKIGD---AGV---TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCS 62 (345)
Q Consensus 1 VD~~GnIYVADt~N------------hrIRkId~---dGV---sTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG~ 62 (345)
+|++|+|||++..+ .+|+++.. ||. .+++.. .++.|.+|+ +..+|
T Consensus 21 ~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~---------------~l~~p~Gi~-~~~~G- 83 (367)
T TIGR02604 21 FDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE---------------ELSMVTGLA-VAVGG- 83 (367)
T ss_pred ECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec---------------CCCCcccee-EecCC-
Confidence 58999999998633 48988875 452 334321 267899998 67788
Q ss_pred EEEEeCCCCEEEEE-eCCC
Q 019135 63 LLVIDRGNAALRQI-SLNQ 80 (345)
Q Consensus 63 LYVADtgNhrIRKi-s~dG 80 (345)
|||++.. +|.++ +.++
T Consensus 84 lyV~~~~--~i~~~~d~~g 100 (367)
T TIGR02604 84 VYVATPP--DILFLRDKDG 100 (367)
T ss_pred EEEeCCC--eEEEEeCCCC
Confidence 9999854 57777 4444
No 16
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=95.08 E-value=0.085 Score=53.62 Aligned_cols=105 Identities=17% Similarity=0.230 Sum_probs=71.8
Q ss_pred CCCEEEEeCCCCEEEEEcCCc-e-EEEecCCCCCCCCCCCCcCccccCCCcccEEECCCCcEEEEeCCC-----------
Q 019135 4 KGNLYVADTLNLAIRKIGDAG-V-TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGN----------- 70 (345)
Q Consensus 4 ~GnIYVADt~NhrIRkId~dG-V-sTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG~LYVADtgN----------- 70 (345)
.|++||||..- -+.+|++.| . +.++.. .+| ..|..-.++. |+++|.||++|+..
T Consensus 126 ggdL~VaDAYl-GL~~V~p~g~~a~~l~~~-------~~G----~~~kf~N~ld-I~~~g~vyFTDSSsk~~~rd~~~a~ 192 (376)
T KOG1520|consen 126 GGDLYVADAYL-GLLKVGPEGGLAELLADE-------AEG----KPFKFLNDLD-IDPEGVVYFTDSSSKYDRRDFVFAA 192 (376)
T ss_pred CCeEEEEecce-eeEEECCCCCcceecccc-------ccC----eeeeecCcee-EcCCCeEEEeccccccchhheEEee
Confidence 45999999764 577889888 4 333321 232 4566677887 67899999999643
Q ss_pred ------CEEEEEeCCCCee-eecccCCCCcceEEEeccceeEEEEeecccccccceecc
Q 019135 71 ------AALRQISLNQDDC-EYQYNSISPTDILMVVGAVLVGYVTCMLQQGFGPFFFSR 122 (345)
Q Consensus 71 ------hrIRKis~dG~~~-t~~~~~~~p~gI~~~~~a~~lgYvs~~~~~~~g~~~~~~ 122 (345)
.|+-++++..+.+ ....+.-+|.|+++.-.- .|+.++|...+|+--.....
T Consensus 193 l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~-sfvl~~Et~~~ri~rywi~g 250 (376)
T KOG1520|consen 193 LEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDG-SFVLVAETTTARIKRYWIKG 250 (376)
T ss_pred ecCCCccceEEecCcccchhhhhhcccccccccCCCCC-CEEEEEeeccceeeeeEecC
Confidence 5566666666654 445667789999877655 47778888888884444333
No 17
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=94.82 E-value=0.063 Score=37.81 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=31.4
Q ss_pred CCEEEEeCCCC-EEEEEcCCc--eEEEecCCCCCCCCCCCCcCccccCCCcccEEEC
Q 019135 5 GNLYVADTLNL-AIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVR 58 (345)
Q Consensus 5 GnIYVADt~Nh-rIRkId~dG--VsTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VD 58 (345)
|+||.+|...+ +|.+.+.+| ..+++-. .+..|.+|| ||
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~---------------~l~~P~gia-VD 41 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISD---------------DLQHPEGIA-VD 41 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEES---------------STSSEEEEE-EE
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEEC---------------CCCCcCEEE-EC
Confidence 57999999999 999999999 4566532 378899999 65
No 18
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.26 E-value=0.18 Score=50.12 Aligned_cols=84 Identities=23% Similarity=0.320 Sum_probs=61.8
Q ss_pred CCCCCCEEEEeCCCCEEEEEcCC-c-eEEEecCCCCCCCCCCCCcCccccCCCcccEEECCCCcEEEEeCCCCEEEEEeC
Q 019135 1 MDDKGNLYVADTLNLAIRKIGDA-G-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISL 78 (345)
Q Consensus 1 VD~~GnIYVADt~NhrIRkId~d-G-VsTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG~LYVADtgNhrIRKis~ 78 (345)
++++|.|+..+...+.|=.+|+. | +.++.=| .| ..|++|. ++++|+.+|+|.++ .|++|++
T Consensus 69 papdG~VWft~qg~gaiGhLdP~tGev~~ypLg----~G-----------a~Phgiv-~gpdg~~Witd~~~-aI~R~dp 131 (353)
T COG4257 69 PAPDGAVWFTAQGTGAIGHLDPATGEVETYPLG----SG-----------ASPHGIV-VGPDGSAWITDTGL-AIGRLDP 131 (353)
T ss_pred cCCCCceEEecCccccceecCCCCCceEEEecC----CC-----------CCCceEE-ECCCCCeeEecCcc-eeEEecC
Confidence 36788899999999999999985 4 5554422 12 3599998 89999999999999 9999999
Q ss_pred -CCCeeeeccc-------C----CCCcceEEEecc
Q 019135 79 -NQDDCEYQYN-------S----ISPTDILMVVGA 101 (345)
Q Consensus 79 -dG~~~t~~~~-------~----~~p~gI~~~~~a 101 (345)
...++.+.-- . -.+-|+.|.+|-
T Consensus 132 kt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q 166 (353)
T COG4257 132 KTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQ 166 (353)
T ss_pred cccceEEeecccccCCCcccceeeCCCccEEEeec
Confidence 5556555421 1 135678888765
No 19
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=93.29 E-value=0.7 Score=44.97 Aligned_cols=109 Identities=21% Similarity=0.269 Sum_probs=64.5
Q ss_pred CCCCC-EEEEeCCCCEEEEE--cCCc-eEE---EecCCCCCCCCCCCCcC-ccccCCCcccEEECCCC-cEEEEeCCCCE
Q 019135 2 DDKGN-LYVADTLNLAIRKI--GDAG-VTT---IAGGKSNVAGFRDGPSE-DAKFSNDFDVVYVRPTC-SLLVIDRGNAA 72 (345)
Q Consensus 2 D~~Gn-IYVADt~NhrIRkI--d~dG-VsT---iAGg~~g~~G~~DG~a~-~A~Fn~P~gIA~VDsdG-~LYVADtgNhr 72 (345)
|++|. ||||......|-.+ +.+| +.. ++-- .|. |+.. ...-.+|.+++ ++++| .|||+|.++.+
T Consensus 95 ~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~----~g~--g~~~~rq~~~h~H~v~-~~pdg~~v~v~dlG~D~ 167 (345)
T PF10282_consen 95 DPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRH----EGS--GPNPDRQEGPHPHQVV-FSPDGRFVYVPDLGADR 167 (345)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEES----EEE--ESSTTTTSSTCEEEEE-E-TTSSEEEEEETTTTE
T ss_pred ecCCCEEEEEEccCCeEEEEEccCCcccceeeeeccc----CCC--CCcccccccccceeEE-ECCCCCEEEEEecCCCE
Confidence 44554 89999888877554 5567 321 1210 011 1111 13356789998 67776 59999999999
Q ss_pred EEEEeCCCCe--eee----cccCC-CCcceEEEeccceeEEEEeecccccccc
Q 019135 73 LRQISLNQDD--CEY----QYNSI-SPTDILMVVGAVLVGYVTCMLQQGFGPF 118 (345)
Q Consensus 73 IRKis~dG~~--~t~----~~~~~-~p~gI~~~~~a~~lgYvs~~~~~~~g~~ 118 (345)
|+.|+.+... .+. .-..+ .|..+++.- .+-+.||.+.+...+-..
T Consensus 168 v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~ 219 (345)
T PF10282_consen 168 VYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVF 219 (345)
T ss_dssp EEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEE
T ss_pred EEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEE
Confidence 9999987653 211 11223 344455443 556889988877666444
No 20
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=93.25 E-value=0.21 Score=33.10 Aligned_cols=35 Identities=11% Similarity=0.045 Sum_probs=29.8
Q ss_pred ccCCCcccEEECCCCcEEEEeCCCCEEEEEeCCCC
Q 019135 47 KFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD 81 (345)
Q Consensus 47 ~Fn~P~gIA~VDsdG~LYVADtgNhrIRKis~dG~ 81 (345)
.+..|.+||+....+.||.+|...++|.+.+.+|.
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 47789999954455789999999999999999985
No 21
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=92.91 E-value=2.6 Score=37.52 Aligned_cols=59 Identities=20% Similarity=0.260 Sum_probs=42.0
Q ss_pred CCEEEEeCCCCEEEEEcCCc--e-EEEecCCCCCCCCCCCCcCccccCCCcccEEECCCCc-EEEEeCCCCEEEEEeCCC
Q 019135 5 GNLYVADTLNLAIRKIGDAG--V-TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCS-LLVIDRGNAALRQISLNQ 80 (345)
Q Consensus 5 GnIYVADt~NhrIRkId~dG--V-sTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG~-LYVADtgNhrIRKis~dG 80 (345)
+++||+...++.|..+|.+. . .++.++ ..|.+++ ++++|. +|++...++.|+.++...
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~-----------------~~~~~l~-~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVG-----------------QRPRGIT-LSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECC-----------------CCCCceE-ECCCCCEEEEEECCCCeEEEEECCC
Confidence 57999999999999999754 3 333321 1246677 566765 678888888999998765
Q ss_pred C
Q 019135 81 D 81 (345)
Q Consensus 81 ~ 81 (345)
.
T Consensus 63 ~ 63 (300)
T TIGR03866 63 G 63 (300)
T ss_pred C
Confidence 4
No 22
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=92.75 E-value=0.47 Score=45.45 Aligned_cols=58 Identities=16% Similarity=0.363 Sum_probs=36.6
Q ss_pred CCCCEEEEeCCCCEEEEEcCCc-e-EE--EecCCCCCCCCCCCCcCccccCCCcccEEECCCCcEEEEeCCC
Q 019135 3 DKGNLYVADTLNLAIRKIGDAG-V-TT--IAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGN 70 (345)
Q Consensus 3 ~~GnIYVADt~NhrIRkId~dG-V-sT--iAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG~LYVADtgN 70 (345)
.+|++||-...+++|..+|.+| + .. +.+| ..|. ...|..|-||| +|++|+|||+.-.|
T Consensus 181 ~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g---~~gl------~~~~~QpEGIa-~d~~G~LYIvsEpN 242 (248)
T PF06977_consen 181 RTGHLLILSDESRLLLELDRQGRVVSSLSLDRG---FHGL------SKDIPQPEGIA-FDPDGNLYIVSEPN 242 (248)
T ss_dssp TTTEEEEEETTTTEEEEE-TT--EEEEEE-STT---GGG-------SS---SEEEEE-E-TT--EEEEETTT
T ss_pred CCCeEEEEECCCCeEEEECCCCCEEEEEEeCCc---ccCc------ccccCCccEEE-ECCCCCEEEEcCCc
Confidence 4689999999999999999999 3 22 2222 1121 23688899999 79999999998766
No 23
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=92.58 E-value=1.1 Score=42.61 Aligned_cols=65 Identities=14% Similarity=0.168 Sum_probs=41.8
Q ss_pred CCCcccEEECCCC-cEEEEeCCCCEEEEEeCCCC-eeee------c-ccCCCCcceEEEeccceeEEEEeeccccc
Q 019135 49 SNDFDVVYVRPTC-SLLVIDRGNAALRQISLNQD-DCEY------Q-YNSISPTDILMVVGAVLVGYVTCMLQQGF 115 (345)
Q Consensus 49 n~P~gIA~VDsdG-~LYVADtgNhrIRKis~dG~-~~t~------~-~~~~~p~gI~~~~~a~~lgYvs~~~~~~~ 115 (345)
..|.+++ ++++| .+||++.+.+.|..++.+.. .+.. . .....|.++++. ..+-+.|++..+...+
T Consensus 126 ~~~~~~~-~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~-pdg~~lyv~~~~~~~v 199 (330)
T PRK11028 126 EGCHSAN-IDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFH-PNQQYAYCVNELNSSV 199 (330)
T ss_pred CcccEeE-eCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEEC-CCCCEEEEEecCCCEE
Confidence 4588888 67776 68899999999999988642 1110 0 011335566554 4556888887654433
No 24
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=92.22 E-value=0.4 Score=53.39 Aligned_cols=88 Identities=15% Similarity=0.101 Sum_probs=68.0
Q ss_pred CEEEEeCCCCEEEEEcCCc--eEEEecCCCCCCCCCCCCcCccccCCCcccEEEC-CCCcEEEEeCCCCEEEEEeCCCCe
Q 019135 6 NLYVADTLNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVR-PTCSLLVIDRGNAALRQISLNQDD 82 (345)
Q Consensus 6 nIYVADt~NhrIRkId~dG--VsTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VD-sdG~LYVADtgNhrIRKis~dG~~ 82 (345)
.||++|-..+.|++-+.+| -.+++- ..|.+|-||| || ..-+||-+|+.|.+|-+..+||++
T Consensus 1038 mvyWtDv~g~SI~rasL~G~Ep~ti~n---------------~~L~SPEGiA-VDh~~Rn~ywtDS~lD~IevA~LdG~~ 1101 (1289)
T KOG1214|consen 1038 MVYWTDVAGRSISRASLEGAEPETIVN---------------SGLISPEGIA-VDHIRRNMYWTDSVLDKIEVALLDGSE 1101 (1289)
T ss_pred eEEEeecCCCccccccccCCCCceeec---------------ccCCCcccee-eeeccceeeeeccccchhheeecCCce
Confidence 4788888888888888777 356653 2488899999 66 445899999999999999999985
Q ss_pred --eeecccCCCCcceEEEeccceeEEEEee
Q 019135 83 --CEYQYNSISPTDILMVVGAVLVGYVTCM 110 (345)
Q Consensus 83 --~t~~~~~~~p~gI~~~~~a~~lgYvs~~ 110 (345)
+.+......|.+|++|.--+ -.|-+.|
T Consensus 1102 rkvLf~tdLVNPR~iv~D~~rg-nLYwtDW 1130 (1289)
T KOG1214|consen 1102 RKVLFYTDLVNPRAIVVDPIRG-NLYWTDW 1130 (1289)
T ss_pred eeEEEeecccCcceEEeecccC-ceeeccc
Confidence 45555678899999887543 4566665
No 25
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=92.16 E-value=0.33 Score=39.98 Aligned_cols=62 Identities=10% Similarity=0.001 Sum_probs=44.3
Q ss_pred ccEEECCC-CcEEEEeC-----------------CCCEEEEEeCCCCee-eecccCCCCcceEEEeccceeEEEEeeccc
Q 019135 53 DVVYVRPT-CSLLVIDR-----------------GNAALRQISLNQDDC-EYQYNSISPTDILMVVGAVLVGYVTCMLQQ 113 (345)
Q Consensus 53 gIA~VDsd-G~LYVADt-----------------gNhrIRKis~dG~~~-t~~~~~~~p~gI~~~~~a~~lgYvs~~~~~ 113 (345)
+|+ |+++ |.||++|+ .+.|+-++++..+.+ ....+..+|.||++.--- -++.|+|...+
T Consensus 2 dld-v~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~-~~vlv~Et~~~ 79 (89)
T PF03088_consen 2 DLD-VDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDE-SFVLVAETGRY 79 (89)
T ss_dssp EEE-E-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTS-SEEEEEEGGGT
T ss_pred cee-EecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCC-CEEEEEeccCc
Confidence 566 6666 99999995 357899999998754 566678899999987654 47889999988
Q ss_pred ccc
Q 019135 114 GFG 116 (345)
Q Consensus 114 ~~g 116 (345)
||-
T Consensus 80 Ri~ 82 (89)
T PF03088_consen 80 RIL 82 (89)
T ss_dssp EEE
T ss_pred eEE
Confidence 873
No 26
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=91.83 E-value=0.48 Score=33.32 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=31.4
Q ss_pred CcEEEEeCCCC-EEEEEeCCCCee--eecccCCCCcceEEE
Q 019135 61 CSLLVIDRGNA-ALRQISLNQDDC--EYQYNSISPTDILMV 98 (345)
Q Consensus 61 G~LYVADtgNh-rIRKis~dG~~~--t~~~~~~~p~gI~~~ 98 (345)
+.||-+|...+ +|.+.+++|... ........|.||+++
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD 41 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVD 41 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEE
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEEC
Confidence 57999999999 999999999853 344556789999886
No 27
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=91.62 E-value=0.34 Score=46.86 Aligned_cols=53 Identities=25% Similarity=0.309 Sum_probs=41.0
Q ss_pred CCCCCCEEEEeCCCCEEEEEcCCc------eEEEecCCCCCCCCCCCCcCccccCCCcccEEECC--CCcEEEEe
Q 019135 1 MDDKGNLYVADTLNLAIRKIGDAG------VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRP--TCSLLVID 67 (345)
Q Consensus 1 VD~~GnIYVADt~NhrIRkId~dG------VsTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDs--dG~LYVAD 67 (345)
+|++|+||++|..++.|.+.++++ +.+++-. .-.|.+|.+++ ++. +|.|||.-
T Consensus 193 ~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d-------------~~~l~~pd~~~-i~~~~~g~L~v~s 253 (287)
T PF03022_consen 193 IDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQD-------------PRTLQWPDGLK-IDPEGDGYLWVLS 253 (287)
T ss_dssp EETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE--------------CC-GSSEEEEE-E-T--TS-EEEEE
T ss_pred ECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEc-------------Cceeeccceee-eccccCceEEEEE
Confidence 488999999999999999999988 3455521 12499999998 788 89999976
No 28
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=90.91 E-value=2 Score=40.71 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=42.2
Q ss_pred CCCC-CEEEEeCCCCEEEEEcCC--c-eEEEecCCCCCCCCCCCCcCccccCCCcccEEECCCC-cEEEEeCCCCEEEEE
Q 019135 2 DDKG-NLYVADTLNLAIRKIGDA--G-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGNAALRQI 76 (345)
Q Consensus 2 D~~G-nIYVADt~NhrIRkId~d--G-VsTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG-~LYVADtgNhrIRKi 76 (345)
+++| .+||++...+.|.+++.+ | +....... ..- ..=..|.+++ ++++| .+||++.+.+.|..+
T Consensus 134 ~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~------~~~----~~g~~p~~~~-~~pdg~~lyv~~~~~~~v~v~ 202 (330)
T PRK11028 134 DPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAE------VTT----VEGAGPRHMV-FHPNQQYAYCVNELNSSVDVW 202 (330)
T ss_pred CCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCc------eec----CCCCCCceEE-ECCCCCEEEEEecCCCEEEEE
Confidence 4555 478888888888888753 3 21100000 000 0013488998 56666 589999999999999
Q ss_pred eCC
Q 019135 77 SLN 79 (345)
Q Consensus 77 s~d 79 (345)
+.+
T Consensus 203 ~~~ 205 (330)
T PRK11028 203 QLK 205 (330)
T ss_pred EEe
Confidence 886
No 29
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=90.50 E-value=1.7 Score=42.74 Aligned_cols=67 Identities=13% Similarity=0.210 Sum_probs=45.8
Q ss_pred CCEEEEeCCCCEEEEEc--C-Cc-e---EEEecCCCCCCCCCCCCcCccccCCCcccEEECCCCcEEEEeCCCCEEEEEe
Q 019135 5 GNLYVADTLNLAIRKIG--D-AG-V---TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQIS 77 (345)
Q Consensus 5 GnIYVADt~NhrIRkId--~-dG-V---sTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG~LYVADtgNhrIRKis 77 (345)
..+|+.|+.|+.|.-++ - .| + ..++--. ....+ .-..|-|++ ||.+|+||||-.+..+|++++
T Consensus 170 K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlr-k~~~~--------e~~~PDGm~-ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 170 KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLR-KSQPF--------ESLEPDGMT-IDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred cEEEEEccCceEEeeeecCCCcccccCcceeEEec-cCCCc--------CCCCCCcce-EccCCcEEEEEecCcEEEEEC
Confidence 35899999999995555 3 33 2 2333210 00111 112488998 899999999999999999999
Q ss_pred CCCC
Q 019135 78 LNQD 81 (345)
Q Consensus 78 ~dG~ 81 (345)
+...
T Consensus 240 p~tG 243 (310)
T KOG4499|consen 240 PTTG 243 (310)
T ss_pred CCCC
Confidence 8753
No 30
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.37 E-value=1.4 Score=44.26 Aligned_cols=67 Identities=10% Similarity=0.120 Sum_probs=46.7
Q ss_pred CCCCEEEEEcCCc-e-EEEecCCCCCCCCCCCCcCccccCCCcccEEEC------CCCcEEEEeCCCCEEEEEeCC-CCe
Q 019135 12 TLNLAIRKIGDAG-V-TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVR------PTCSLLVIDRGNAALRQISLN-QDD 82 (345)
Q Consensus 12 t~NhrIRkId~dG-V-sTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VD------sdG~LYVADtgNhrIRKis~d-G~~ 82 (345)
..+..|-++|.+| + ..++-+ +.||.|++|| +- -.|.|+|...+..+|..|++. |.+
T Consensus 219 ~G~G~VdvFd~~G~l~~r~as~--------------g~LNaPWG~a-~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~ 283 (336)
T TIGR03118 219 AGLGYVNVFTLNGQLLRRVASS--------------GRLNAPWGLA-IAPESFGSLSGALLVGNFGDGTINAYDPQSGAQ 283 (336)
T ss_pred CCcceEEEEcCCCcEEEEeccC--------------CcccCCceee-eChhhhCCCCCCeEEeecCCceeEEecCCCCce
Confidence 4456788888888 3 444321 4699999999 53 347999999999999999986 665
Q ss_pred ee-ecccCCCCc
Q 019135 83 CE-YQYNSISPT 93 (345)
Q Consensus 83 ~t-~~~~~~~p~ 93 (345)
.- .....+.|+
T Consensus 284 ~g~L~~~~G~pi 295 (336)
T TIGR03118 284 LGQLLDPDNHPV 295 (336)
T ss_pred eeeecCCCCCeE
Confidence 42 223334443
No 31
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=89.01 E-value=2.2 Score=41.50 Aligned_cols=101 Identities=15% Similarity=0.060 Sum_probs=60.2
Q ss_pred CCCCC-EEEEeCCCCEEEEEcCCc---eEEEecCCCCCCCCCCCCcCccccCCCcccEEECCCC-cEEEEeCCCCEEEEE
Q 019135 2 DDKGN-LYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGNAALRQI 76 (345)
Q Consensus 2 D~~Gn-IYVADt~NhrIRkId~dG---VsTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG-~LYVADtgNhrIRKi 76 (345)
+++|+ |||+|.++.+|++++.+. ..+......- ..-+.|..|+ ++++| .+||++..++.|..|
T Consensus 152 ~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~-----------~~G~GPRh~~-f~pdg~~~Yv~~e~s~~v~v~ 219 (345)
T PF10282_consen 152 SPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV-----------PPGSGPRHLA-FSPDGKYAYVVNELSNTVSVF 219 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC-----------STTSSEEEEE-E-TTSSEEEEEETTTTEEEEE
T ss_pred CCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc-----------ccCCCCcEEE-EcCCcCEEEEecCCCCcEEEE
Confidence 56665 999999999999888543 1211111000 0123589999 56665 699999999999999
Q ss_pred eCC---CCeeeecccC---------CCCcceEEEeccceeEEEEeeccccc
Q 019135 77 SLN---QDDCEYQYNS---------ISPTDILMVVGAVLVGYVTCMLQQGF 115 (345)
Q Consensus 77 s~d---G~~~t~~~~~---------~~p~gI~~~~~a~~lgYvs~~~~~~~ 115 (345)
+.+ |.....+.-. ..+.+|++. ..+-+.||+.-+...|
T Consensus 220 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~is-pdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 220 DYDPSDGSLTEIQTISTLPEGFTGENAPAEIAIS-PDGRFLYVSNRGSNSI 269 (345)
T ss_dssp EEETTTTEEEEEEEEESCETTSCSSSSEEEEEE--TTSSEEEEEECTTTEE
T ss_pred eecccCCceeEEEEeeeccccccccCCceeEEEe-cCCCEEEEEeccCCEE
Confidence 877 2222111100 133445443 4566899988775544
No 32
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=88.91 E-value=1.4 Score=49.25 Aligned_cols=81 Identities=16% Similarity=0.102 Sum_probs=61.5
Q ss_pred CEEEEeCCCCEEEEEcCCc-e-EEEecCCCCCCCCCCCCcCccccCCCcccEEEC-CCCcEEEEeCC--CCEEEEEeCCC
Q 019135 6 NLYVADTLNLAIRKIGDAG-V-TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVR-PTCSLLVIDRG--NAALRQISLNQ 80 (345)
Q Consensus 6 nIYVADt~NhrIRkId~dG-V-sTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VD-sdG~LYVADtg--NhrIRKis~dG 80 (345)
|||.+|+.+.+|-+...|| . ..++- .-|-+|.+|+ +| -.|+||-+|++ |-.|-..++||
T Consensus 1081 n~ywtDS~lD~IevA~LdG~~rkvLf~---------------tdLVNPR~iv-~D~~rgnLYwtDWnRenPkIets~mDG 1144 (1289)
T KOG1214|consen 1081 NMYWTDSVLDKIEVALLDGSERKVLFY---------------TDLVNPRAIV-VDPIRGNLYWTDWNRENPKIETSSMDG 1144 (1289)
T ss_pred eeeeeccccchhheeecCCceeeEEEe---------------ecccCcceEE-eecccCceeeccccccCCcceeeccCC
Confidence 7999999999999999999 3 33442 1266799998 55 45799999965 88899999999
Q ss_pred Ce--eeecccCCCCcceEEEeccc
Q 019135 81 DD--CEYQYNSISPTDILMVVGAV 102 (345)
Q Consensus 81 ~~--~t~~~~~~~p~gI~~~~~a~ 102 (345)
+- +......+.|.|++++--.-
T Consensus 1145 ~NrRilin~DigLPNGLtfdpfs~ 1168 (1289)
T KOG1214|consen 1145 ENRRILINTDIGLPNGLTFDPFSK 1168 (1289)
T ss_pred ccceEEeecccCCCCCceeCcccc
Confidence 74 23334557899988875443
No 33
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=86.80 E-value=2.3 Score=34.82 Aligned_cols=32 Identities=16% Similarity=0.143 Sum_probs=27.3
Q ss_pred ccCCCcccEEECCC-CcEEEEeCCCCEEEEEeCC
Q 019135 47 KFSNDFDVVYVRPT-CSLLVIDRGNAALRQISLN 79 (345)
Q Consensus 47 ~Fn~P~gIA~VDsd-G~LYVADtgNhrIRKis~d 79 (345)
.|..|+||+ ++++ ..|||++...+.|+.+..+
T Consensus 52 g~~~aNGI~-~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 52 GFSFANGIA-ISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred cCCCCceEE-EcCCCCEEEEEeccCCeEEEEEec
Confidence 488999999 6765 5799999999999988765
No 34
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=86.56 E-value=1 Score=46.00 Aligned_cols=51 Identities=12% Similarity=0.099 Sum_probs=37.3
Q ss_pred ccCCCcccEEECCCC-cEEEEeCCCCEEEEEeCCCCee----eecc-cCCCCcceEEE
Q 019135 47 KFSNDFDVVYVRPTC-SLLVIDRGNAALRQISLNQDDC----EYQY-NSISPTDILMV 98 (345)
Q Consensus 47 ~Fn~P~gIA~VDsdG-~LYVADtgNhrIRKis~dG~~~----t~~~-~~~~p~gI~~~ 98 (345)
.|..|+||+ +.+++ -|+++.+...||+++-..|.-. .+.. -+++|-.|-.+
T Consensus 217 ~L~F~NGla-LS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~ 273 (376)
T KOG1520|consen 217 GLYFPNGLA-LSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRD 273 (376)
T ss_pred ccccccccc-CCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeEC
Confidence 488899999 66665 5899999999999999988643 2222 34666666554
No 35
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=84.72 E-value=4.7 Score=42.66 Aligned_cols=80 Identities=20% Similarity=0.343 Sum_probs=48.9
Q ss_pred CCCEEEEeCCCC-------------------EEEEEcCCc---------e-EEEecCCCCC-CCCCCCCcCccccCCCcc
Q 019135 4 KGNLYVADTLNL-------------------AIRKIGDAG---------V-TTIAGGKSNV-AGFRDGPSEDAKFSNDFD 53 (345)
Q Consensus 4 ~GnIYVADt~Nh-------------------rIRkId~dG---------V-sTiAGg~~g~-~G~~DG~a~~A~Fn~P~g 53 (345)
+|.||||-+.|. .|.++++++ + ..+.+|.... .+...+......|++|-+
T Consensus 361 ~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~~f~sPDN 440 (524)
T PF05787_consen 361 DGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGSNKCDDNGFASPDN 440 (524)
T ss_pred CCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccccCcccCCCcCCCCc
Confidence 578999988877 788888643 1 2233332110 011122233467999999
Q ss_pred cEEECCCCcEEEEeCCC-CE--EEEEeCCCCeee
Q 019135 54 VVYVRPTCSLLVIDRGN-AA--LRQISLNQDDCE 84 (345)
Q Consensus 54 IA~VDsdG~LYVADtgN-hr--IRKis~dG~~~t 84 (345)
|+ +|++|+|||+.-++ +. |.-.+.+|....
T Consensus 441 L~-~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~ 473 (524)
T PF05787_consen 441 LA-FDPDGNLWIQEDGGGSNNNLPGVTPDGEVYD 473 (524)
T ss_pred eE-ECCCCCEEEEeCCCCCCcccccccccCceee
Confidence 99 79999998876443 32 555666665443
No 36
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=83.20 E-value=2.6 Score=41.31 Aligned_cols=56 Identities=30% Similarity=0.381 Sum_probs=38.8
Q ss_pred CCCEEEEeCCCCEEEEEcCC--c-eE--EEecCCCCCCCCCCCCcCccccC-CCcccEEECCCCcEEEEeCCCCEEEE
Q 019135 4 KGNLYVADTLNLAIRKIGDA--G-VT--TIAGGKSNVAGFRDGPSEDAKFS-NDFDVVYVRPTCSLLVIDRGNAALRQ 75 (345)
Q Consensus 4 ~GnIYVADt~NhrIRkId~d--G-Vs--TiAGg~~g~~G~~DG~a~~A~Fn-~P~gIA~VDsdG~LYVADtgNhrIRK 75 (345)
.|.++|+|....+|..+..+ + +. ..+-+ .+. .|.+|+ +++||.|||+|..+..|-+
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------------~~~~r~~~v~-~~pDG~Lyv~~d~~G~iyR 331 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLG---------------GFGGRPRDVA-QGPDGALYVSDDSDGKIYR 331 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECT---------------TSSS-EEEEE-EETTSEEEEEE-TTTTEEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccc---------------cCCCCceEEE-EcCCCeEEEEECCCCeEeC
Confidence 57899999999999988754 3 21 11101 133 588998 7999999999987777643
No 37
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=82.78 E-value=5.9 Score=39.69 Aligned_cols=91 Identities=19% Similarity=0.143 Sum_probs=51.2
Q ss_pred CEEEEeCCCCEEEEEcCCc---eEEEecCCCCCCCCCCCCcCccccCCCcccEEECCCC-cEEEEeCCCCEEEEEeCCCC
Q 019135 6 NLYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGNAALRQISLNQD 81 (345)
Q Consensus 6 nIYVADt~NhrIRkId~dG---VsTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG-~LYVADtgNhrIRKis~dG~ 81 (345)
.+||+++..+.|.+||.+. +.++..+. .. +.+++ ..+|| .+||+.+. ..|.+|++...
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~--------------~~--h~~~~-~s~Dgr~~yv~~rd-g~vsviD~~~~ 68 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGG--------------AP--HAGLK-FSPDGRYLYVANRD-GTVSVIDLATG 68 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-ST--------------TE--EEEEE--TT-SSEEEEEETT-SEEEEEETTSS
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCC--------------Cc--eeEEE-ecCCCCEEEEEcCC-CeEEEEECCcc
Confidence 3568999999999999876 34554331 01 23344 46666 48888754 57888887665
Q ss_pred eeeec-ccCCCCcceEEEeccceeEEEEeeccccc
Q 019135 82 DCEYQ-YNSISPTDILMVVGAVLVGYVTCMLQQGF 115 (345)
Q Consensus 82 ~~t~~-~~~~~p~gI~~~~~a~~lgYvs~~~~~~~ 115 (345)
-.... .....|.||++. ..+-++|++++....+
T Consensus 69 ~~v~~i~~G~~~~~i~~s-~DG~~~~v~n~~~~~v 102 (369)
T PF02239_consen 69 KVVATIKVGGNPRGIAVS-PDGKYVYVANYEPGTV 102 (369)
T ss_dssp SEEEEEE-SSEEEEEEE---TTTEEEEEEEETTEE
T ss_pred cEEEEEecCCCcceEEEc-CCCCEEEEEecCCCce
Confidence 33222 222345555544 2334666666655544
No 38
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=82.62 E-value=12 Score=33.20 Aligned_cols=47 Identities=11% Similarity=0.112 Sum_probs=30.4
Q ss_pred CCcccEEECCCCc-EEEEeCCCCEEEEEeCCCCeeeecc-cCCCCcceEE
Q 019135 50 NDFDVVYVRPTCS-LLVIDRGNAALRQISLNQDDCEYQY-NSISPTDILM 97 (345)
Q Consensus 50 ~P~gIA~VDsdG~-LYVADtgNhrIRKis~dG~~~t~~~-~~~~p~gI~~ 97 (345)
.+.+|+ ++++|. ||++....+.|+.++.+...+...- -...|.+|++
T Consensus 250 ~~~~~~-~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 298 (300)
T TIGR03866 250 RVWQLA-FTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVV 298 (300)
T ss_pred CcceEE-ECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEe
Confidence 467787 566765 6667767788999998886543221 1245666653
No 39
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=82.30 E-value=2.2 Score=41.80 Aligned_cols=50 Identities=14% Similarity=0.100 Sum_probs=36.1
Q ss_pred cCCCcccEEECCCCcEEEEeCCCCEEEEEeCCCCeee-ecc-------cCCCCcceEEEe
Q 019135 48 FSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCE-YQY-------NSISPTDILMVV 99 (345)
Q Consensus 48 Fn~P~gIA~VDsdG~LYVADtgNhrIRKis~dG~~~t-~~~-------~~~~p~gI~~~~ 99 (345)
|+.|+.|+ +.++|.|||++. ..+|+.++.+|..+. ... +.....||+++-
T Consensus 1 L~~P~~~a-~~pdG~l~v~e~-~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p 58 (331)
T PF07995_consen 1 LNNPRSMA-FLPDGRLLVAER-SGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHP 58 (331)
T ss_dssp ESSEEEEE-EETTSCEEEEET-TTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-T
T ss_pred CCCceEEE-EeCCCcEEEEeC-CceEEEEeCCCcCcceecccccccccccCCcccceecc
Confidence 57899999 567899999999 999999998887622 111 113346777766
No 40
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=81.87 E-value=8.7 Score=38.64 Aligned_cols=69 Identities=7% Similarity=0.113 Sum_probs=54.1
Q ss_pred CCCCCCEEEEeCCCCEEEEEcCCc---eEE-EecCCCCCCCCCCCCcCccccCCCcccEEECCCCcEEEEeCCCCEEEEE
Q 019135 1 MDDKGNLYVADTLNLAIRKIGDAG---VTT-IAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQI 76 (345)
Q Consensus 1 VD~~GnIYVADt~NhrIRkId~dG---VsT-iAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG~LYVADtgNhrIRKi 76 (345)
+|+-|.++|++..+.++.++|+.. .+- +-|. =-.|..+- ||..|.|+..|...+.|-+|
T Consensus 240 sdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs----------------~arpys~r-VD~~grVW~sea~agai~rf 302 (353)
T COG4257 240 SDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGS----------------KARPYSMR-VDRHGRVWLSEADAGAIGRF 302 (353)
T ss_pred cCccCcEEEeccCCceeeEeCcccccceeeeCCCC----------------CCCcceee-eccCCcEEeeccccCceeec
Confidence 588899999999999999999876 121 1121 12478885 99999999999999999999
Q ss_pred eCCCC-eeeec
Q 019135 77 SLNQD-DCEYQ 86 (345)
Q Consensus 77 s~dG~-~~t~~ 86 (345)
++... ++.+.
T Consensus 303 dpeta~ftv~p 313 (353)
T COG4257 303 DPETARFTVLP 313 (353)
T ss_pred CcccceEEEec
Confidence 99886 44443
No 41
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=78.50 E-value=1.4 Score=30.55 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=17.2
Q ss_pred CCCcccEEECCCCcEEEEeCCC
Q 019135 49 SNDFDVVYVRPTCSLLVIDRGN 70 (345)
Q Consensus 49 n~P~gIA~VDsdG~LYVADtgN 70 (345)
..+.+|| +|++|+|||+=.-|
T Consensus 13 ~~~~~Ia-vD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 13 DYGNGIA-VDSNGNIYVTGYTN 33 (38)
T ss_pred eeEEEEE-ECCCCCEEEEEeec
Confidence 3689999 89999999986543
No 42
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=76.67 E-value=5.8 Score=40.10 Aligned_cols=49 Identities=8% Similarity=0.049 Sum_probs=38.6
Q ss_pred cCCCcccEEECCCCcEEEEeCCCCEEEEEeCC-CCeeeecccCCCCcceEEE
Q 019135 48 FSNDFDVVYVRPTCSLLVIDRGNAALRQISLN-QDDCEYQYNSISPTDILMV 98 (345)
Q Consensus 48 Fn~P~gIA~VDsdG~LYVADtgNhrIRKis~d-G~~~t~~~~~~~p~gI~~~ 98 (345)
|..|.+--. -+|.|||.|.+.+.|.+++++ |+...-..-.+++.|+.++
T Consensus 202 LsmPhSPRW--hdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~ 251 (335)
T TIGR03032 202 LSMPHSPRW--YQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA 251 (335)
T ss_pred ccCCcCCcE--eCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee
Confidence 555555542 368999999999999999997 8876655567889998888
No 43
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=74.92 E-value=22 Score=35.17 Aligned_cols=68 Identities=12% Similarity=0.071 Sum_probs=45.0
Q ss_pred ccCCCcccEEECCCCcEEEEeCCCCEEEEEeCCC---Ceee----e---cc---cCCCCcceEEEeccceeEEEEeeccc
Q 019135 47 KFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ---DDCE----Y---QY---NSISPTDILMVVGAVLVGYVTCMLQQ 113 (345)
Q Consensus 47 ~Fn~P~gIA~VDsdG~LYVADtgNhrIRKis~dG---~~~t----~---~~---~~~~p~gI~~~~~a~~lgYvs~~~~~ 113 (345)
++.-+++|+-......+|++|+.|+.|-.++.|. ..+. + -+ +.-.|-|.+|++ -+..||++|-..
T Consensus 156 ~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~--eG~L~Va~~ng~ 233 (310)
T KOG4499|consen 156 CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT--EGNLYVATFNGG 233 (310)
T ss_pred hccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc--CCcEEEEEecCc
Confidence 3455778874333457999999999997776332 2211 1 01 234678999986 568899999876
Q ss_pred ccc
Q 019135 114 GFG 116 (345)
Q Consensus 114 ~~g 116 (345)
++-
T Consensus 234 ~V~ 236 (310)
T KOG4499|consen 234 TVQ 236 (310)
T ss_pred EEE
Confidence 653
No 44
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.31 E-value=12 Score=37.54 Aligned_cols=57 Identities=14% Similarity=0.268 Sum_probs=41.2
Q ss_pred CCCEEEEeCCCCEEEEEcCCc-e---EEEecCCCCCCCCCCCCcCccccCCCcccEEECCCCcEEEEeCCC
Q 019135 4 KGNLYVADTLNLAIRKIGDAG-V---TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGN 70 (345)
Q Consensus 4 ~GnIYVADt~NhrIRkId~dG-V---sTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG~LYVADtgN 70 (345)
+|+++|--...+++..+|.+| + ....+| ..|.. ...-.+-||| .|++|+|||+---|
T Consensus 244 ~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g---~~gL~------~dipqaEGia-mDd~g~lYIvSEPn 304 (316)
T COG3204 244 TNSLLVLSDESRRLLEVDLSGEVIELLSLTKG---NHGLS------SDIPQAEGIA-MDDDGNLYIVSEPN 304 (316)
T ss_pred CCcEEEEecCCceEEEEecCCCeeeeEEeccC---CCCCc------ccCCCcceeE-ECCCCCEEEEecCC
Confidence 677888877889999999999 3 233333 23443 2355688999 89999999987554
No 45
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=73.33 E-value=61 Score=31.77 Aligned_cols=78 Identities=21% Similarity=0.345 Sum_probs=50.3
Q ss_pred CCCCCEEEEeCCCCEEEEEc-CCc-eEEEecCCCCCCCCCCCCcCccccCCCcccEEE---CCCCcEEEEeC--------
Q 019135 2 DDKGNLYVADTLNLAIRKIG-DAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYV---RPTCSLLVIDR-------- 68 (345)
Q Consensus 2 D~~GnIYVADt~NhrIRkId-~dG-VsTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~V---DsdG~LYVADt-------- 68 (345)
+.+|++.|+=+..+.|.+|+ .+| |.=..||+.+ ..+.. ....|..-.+..++ +.++.|-|-|-
T Consensus 152 ~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~-~df~~---~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~~~~~ 227 (299)
T PF14269_consen 152 DDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRN-SDFTL---PATNFSWQHDARFLNESNDDGTISLFDNANSDFNGT 227 (299)
T ss_pred cCCccEEEEecccCEEEEEECCCCcEEEEeCCCCC-Ccccc---cCCcEeeccCCEEeccCCCCCEEEEEcCCCCCCCCC
Confidence 67899999999999999999 567 6655666411 12222 34567777777655 25666777665
Q ss_pred --CCCEEEEEeCCCCee
Q 019135 69 --GNAALRQISLNQDDC 83 (345)
Q Consensus 69 --gNhrIRKis~dG~~~ 83 (345)
...+|-.+++..+.+
T Consensus 228 ~~s~~~v~~ld~~~~~~ 244 (299)
T PF14269_consen 228 EPSRGLVLELDPETMTV 244 (299)
T ss_pred cCCCceEEEEECCCCEE
Confidence 334566666665543
No 46
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=73.12 E-value=12 Score=38.73 Aligned_cols=65 Identities=23% Similarity=0.382 Sum_probs=44.5
Q ss_pred CCEEEEeCCCCEEEEEcCCc-eEEEecCCCCCCCCCCCCcCccccCCCcccEEECCCCcEEEEeCC-CCEEEEEeCCC
Q 019135 5 GNLYVADTLNLAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRG-NAALRQISLNQ 80 (345)
Q Consensus 5 GnIYVADt~NhrIRkId~dG-VsTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG~LYVADtg-NhrIRKis~dG 80 (345)
|.++|+-...-.+..++++| ...+..+ +..+. ..-.|.+|+ +..||.|||+|-. |.+|-+++..+
T Consensus 332 ~~lfV~~hgsw~~~~~~~~g~~~~~~~~------fl~~d----~~gR~~dV~-v~~DGallv~~D~~~g~i~Rv~~~~ 398 (399)
T COG2133 332 GDLFVGAHGSWPVLRLRPDGNYKVVLTG------FLSGD----LGGRPRDVA-VAPDGALLVLTDQGDGRILRVSYAG 398 (399)
T ss_pred CcEEEEeecceeEEEeccCCCcceEEEE------EEecC----CCCcccceE-ECCCCeEEEeecCCCCeEEEecCCC
Confidence 67888877766677788887 2222211 11100 015799998 8999999999977 66999998765
No 47
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=73.03 E-value=38 Score=34.29 Aligned_cols=58 Identities=17% Similarity=0.122 Sum_probs=42.0
Q ss_pred CCEEEEeCC----CCEEEEEcCCc--e-EEEecCCCCCCCCCCCCcCccccCCCcccEEECCCC-cEEEEeC--------
Q 019135 5 GNLYVADTL----NLAIRKIGDAG--V-TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDR-------- 68 (345)
Q Consensus 5 GnIYVADt~----NhrIRkId~dG--V-sTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG-~LYVADt-------- 68 (345)
.++||.|.. .++|.+||.+. + .++..|. .|.++ +.++| .||||.+
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~-----------------~P~~~--~spDg~~lyva~~~~~R~~~G 73 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGF-----------------LPNPV--VASDGSFFAHASTVYSRIARG 73 (352)
T ss_pred CEEEEECCcccccCceEEEEECCCCEEEEEEEccC-----------------CCcee--ECCCCCEEEEEeccccccccC
Confidence 469999987 38999999876 3 4554331 36775 45554 6999999
Q ss_pred -CCCEEEEEeCCCC
Q 019135 69 -GNAALRQISLNQD 81 (345)
Q Consensus 69 -gNhrIRKis~dG~ 81 (345)
..+.|.+|+....
T Consensus 74 ~~~d~V~v~D~~t~ 87 (352)
T TIGR02658 74 KRTDYVEVIDPQTH 87 (352)
T ss_pred CCCCEEEEEECccC
Confidence 8889999887654
No 48
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=72.95 E-value=34 Score=34.89 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=61.6
Q ss_pred CCCCC-CEEEEeCCCCEEEEE--cCCc-eEEEecCCCCCCCCCCCCcCccccCCCcccEEECCCC-cEEEEeCCCCEEEE
Q 019135 1 MDDKG-NLYVADTLNLAIRKI--GDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGNAALRQ 75 (345)
Q Consensus 1 VD~~G-nIYVADt~NhrIRkI--d~dG-VsTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG-~LYVADtgNhrIRK 75 (345)
||.+| -||+|....++|.++ ..+| +-.+.+-. .....|+-....=.++...- ++++| .|+|.|-+..||..
T Consensus 96 vd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~---~h~g~~p~~rQ~~~h~H~a~-~tP~~~~l~v~DLG~Dri~~ 171 (346)
T COG2706 96 VDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVV---KHTGSGPHERQESPHVHSAN-FTPDGRYLVVPDLGTDRIFL 171 (346)
T ss_pred ECCCCCEEEEEEccCceEEEEEcccCCccccceeee---ecCCCCCCccccCCccceee-eCCCCCEEEEeecCCceEEE
Confidence 57788 477787776666544 4567 32211100 00011111111122234444 67888 79999999999999
Q ss_pred EeCCCCeeeecc----cCCCCcceEEEeccceeEEEEeeccccc
Q 019135 76 ISLNQDDCEYQY----NSISPTDILMVVGAVLVGYVTCMLQQGF 115 (345)
Q Consensus 76 is~dG~~~t~~~----~~~~p~gI~~~~~a~~lgYvs~~~~~~~ 115 (345)
|+++....+... ..+.+..=++.=..+-+.|+.+.|+..|
T Consensus 172 y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV 215 (346)
T COG2706 172 YDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTV 215 (346)
T ss_pred EEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEE
Confidence 988743332222 2233333344444456889888888766
No 49
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=71.30 E-value=23 Score=35.94 Aligned_cols=85 Identities=19% Similarity=0.187 Sum_probs=57.1
Q ss_pred CCEEEEeCCCCEEEEEcCCc-eEEEecCCCCCCCCCCCCcCccccCCCcccEEECCCCcEEEE-------------eCCC
Q 019135 5 GNLYVADTLNLAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVI-------------DRGN 70 (345)
Q Consensus 5 GnIYVADt~NhrIRkId~dG-VsTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG~LYVA-------------DtgN 70 (345)
..||.||..|.+|.++|..- ..+..|. +.|- ..-+.| .|++|.-+ .|.|||+ ..++
T Consensus 152 ~~LYaadF~~g~IDVFd~~f~~~~~~g~------F~DP-~iPagy-APFnIqni--g~~lyVtYA~qd~~~~d~v~G~G~ 221 (336)
T TIGR03118 152 DYLYAANFRQGRIDVFKGSFRPPPLPGS------FIDP-ALPAGY-APFNVQNL--GGTLYVTYAQQDADRNDEVAGAGL 221 (336)
T ss_pred ceEEEeccCCCceEEecCccccccCCCC------ccCC-CCCCCC-CCcceEEE--CCeEEEEEEecCCcccccccCCCc
Confidence 46999999999999998765 2334443 3331 112333 37888744 5788886 3667
Q ss_pred CEEEEEeCCCCeeee-ccc--CCCCcceEEEe
Q 019135 71 AALRQISLNQDDCEY-QYN--SISPTDILMVV 99 (345)
Q Consensus 71 hrIRKis~dG~~~t~-~~~--~~~p~gI~~~~ 99 (345)
.-|-+|+++|..... .+. .+.|-||++.-
T Consensus 222 G~VdvFd~~G~l~~r~as~g~LNaPWG~a~AP 253 (336)
T TIGR03118 222 GYVNVFTLNGQLLRRVASSGRLNAPWGLAIAP 253 (336)
T ss_pred ceEEEEcCCCcEEEEeccCCcccCCceeeeCh
Confidence 789999999998753 332 36788887643
No 50
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=70.19 E-value=43 Score=35.17 Aligned_cols=69 Identities=9% Similarity=0.164 Sum_probs=43.9
Q ss_pred CCCCCEEEEeCCCCEEEEEcCCc-e-EEEecCCCCCCCCCCCCcCccccCCCcccEEECCC-------CcEEEEeC----
Q 019135 2 DDKGNLYVADTLNLAIRKIGDAG-V-TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPT-------CSLLVIDR---- 68 (345)
Q Consensus 2 D~~GnIYVADt~NhrIRkId~dG-V-sTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsd-------G~LYVADt---- 68 (345)
.++|.|||++....+|+++++++ . ..+.+ .. ... ..+......+|| ++++ +.|||+=+
T Consensus 38 lPDG~llVtER~~G~I~~v~~~~~~~~~~~~-l~---~v~----~~~ge~GLlgla-l~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 38 GPDNQLWVTERATGKILRVNPETGEVKVVFT-LP---EIV----NDAQHNGLLGLA-LHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred cCCCeEEEEEecCCEEEEEeCCCCceeeeec-CC---cee----ccCCCCceeeEE-ECCCccccCCCcEEEEEEeccCC
Confidence 46899999999889999998765 3 33332 11 110 011245678888 5544 47999831
Q ss_pred -----CCCEEEEEeCC
Q 019135 69 -----GNAALRQISLN 79 (345)
Q Consensus 69 -----gNhrIRKis~d 79 (345)
...+|.++.++
T Consensus 109 ~~~~~~~~~I~R~~l~ 124 (454)
T TIGR03606 109 DKELPNHTKIVRYTYD 124 (454)
T ss_pred CCCccCCcEEEEEEec
Confidence 24688888775
No 51
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=70.16 E-value=13 Score=35.66 Aligned_cols=64 Identities=13% Similarity=0.024 Sum_probs=39.4
Q ss_pred ccCCCcccEEECCCCcEEEEeCCCCEEEEEeCCCCeeeecccC----------CCCcceEEEeccceeEEEEeecc
Q 019135 47 KFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCEYQYNS----------ISPTDILMVVGAVLVGYVTCMLQ 112 (345)
Q Consensus 47 ~Fn~P~gIA~VDsdG~LYVADtgNhrIRKis~dG~~~t~~~~~----------~~p~gI~~~~~a~~lgYvs~~~~ 112 (345)
.+..|++|++....|.|||....+++|-.++.+|++.....-. ..|.||+++- .+ --||+.--|
T Consensus 169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G-~LYIvsEpN 242 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DG-NLYIVSEPN 242 (248)
T ss_dssp -SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T---EEEEETTT
T ss_pred eeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECC-CC-CEEEEcCCc
Confidence 4667899997677789999999999999999999976443211 2478999995 43 555554433
No 52
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=69.58 E-value=18 Score=23.90 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=24.3
Q ss_pred CCcEEEEeCCCCEEEEEeCCCCee-eecccCCCCcceEE
Q 019135 60 TCSLLVIDRGNAALRQISLNQDDC-EYQYNSISPTDILM 97 (345)
Q Consensus 60 dG~LYVADtgNhrIRKis~dG~~~-t~~~~~~~p~gI~~ 97 (345)
...|||++.+.+.|-.|+....-. ....-...|.+|++
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 456999999999999999755422 22122244655543
No 53
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=69.21 E-value=54 Score=33.27 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=27.3
Q ss_pred cCCCcccEEECCCC-cEEEEeCC-CCEEEEEeCCCCee
Q 019135 48 FSNDFDVVYVRPTC-SLLVIDRG-NAALRQISLNQDDC 83 (345)
Q Consensus 48 Fn~P~gIA~VDsdG-~LYVADtg-NhrIRKis~dG~~~ 83 (345)
...|..++ +.++| .|||++.. .+.|-+|+....-.
T Consensus 104 ~~~~~~~~-ls~dgk~l~V~n~~p~~~V~VvD~~~~kv 140 (352)
T TIGR02658 104 GTYPWMTS-LTPDNKTLLFYQFSPSPAVGVVDLEGKAF 140 (352)
T ss_pred cCccceEE-ECCCCCEEEEecCCCCCEEEEEECCCCcE
Confidence 45677888 67887 59999966 89999999877643
No 54
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=65.69 E-value=8.8 Score=25.14 Aligned_cols=21 Identities=29% Similarity=0.199 Sum_probs=18.5
Q ss_pred CCCEEEEeCCCCEEEEEcCCc
Q 019135 4 KGNLYVADTLNLAIRKIGDAG 24 (345)
Q Consensus 4 ~GnIYVADt~NhrIRkId~dG 24 (345)
.+.||.+|...++|.+.+.+|
T Consensus 20 ~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 20 EGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred CCEEEEEeCCCCEEEEEeCCC
Confidence 357999999999999999887
No 55
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=64.91 E-value=15 Score=35.57 Aligned_cols=57 Identities=12% Similarity=-0.023 Sum_probs=37.3
Q ss_pred cccEEECCCCcEEEEeCCCCEEEEEeCCCCee-----e-ecc-c-CCCCcceEEEeccceeEEEEe
Q 019135 52 FDVVYVRPTCSLLVIDRGNAALRQISLNQDDC-----E-YQY-N-SISPTDILMVVGAVLVGYVTC 109 (345)
Q Consensus 52 ~gIA~VDsdG~LYVADtgNhrIRKis~dG~~~-----t-~~~-~-~~~p~gI~~~~~a~~lgYvs~ 109 (345)
.+++ +|++|+||++|..++.|-++++++.+. . ..+ . ..+|.++.++--.-+..|+++
T Consensus 189 ~g~~-~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 189 DGMA-IDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp CEEE-EETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ceEE-ECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 3555 799999999999999999999999332 2 222 2 357888887761123445544
No 56
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=64.13 E-value=14 Score=38.69 Aligned_cols=33 Identities=12% Similarity=0.322 Sum_probs=29.0
Q ss_pred cCCCcccEEECCCCcEEEEeCCCCEEEEEeCCCC
Q 019135 48 FSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD 81 (345)
Q Consensus 48 Fn~P~gIA~VDsdG~LYVADtgNhrIRKis~dG~ 81 (345)
|..|++|+ +.++|.|||+.+...+|++++.++.
T Consensus 29 L~~Pw~ma-flPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 29 LNKPWALL-WGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCCceEEE-EcCCCeEEEEEecCCEEEEEeCCCC
Confidence 88999999 5789999999998899999987653
No 57
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=60.47 E-value=33 Score=37.34 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=21.1
Q ss_pred cccCCCcccEEECCCCcEEEEeCCCC
Q 019135 46 AKFSNDFDVVYVRPTCSLLVIDRGNA 71 (345)
Q Consensus 46 A~Fn~P~gIA~VDsdG~LYVADtgNh 71 (345)
.-|++|-+|+ +|+.|.|+|+.-++.
T Consensus 497 ~~f~~PDnl~-fD~~GrLWi~TDg~~ 521 (616)
T COG3211 497 NWFNSPDNLA-FDPWGRLWIQTDGSG 521 (616)
T ss_pred ccccCCCceE-ECCCCCEEEEecCCC
Confidence 5699999999 799999999875543
No 58
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=59.22 E-value=25 Score=35.65 Aligned_cols=26 Identities=15% Similarity=0.349 Sum_probs=22.5
Q ss_pred CCCEEEEeCCCCEEEEEcCC-c-eEEEe
Q 019135 4 KGNLYVADTLNLAIRKIGDA-G-VTTIA 29 (345)
Q Consensus 4 ~GnIYVADt~NhrIRkId~d-G-VsTiA 29 (345)
+|.|||+|.+.+.|.++|++ | ...++
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va 239 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVA 239 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEE
Confidence 68999999999999999997 7 55554
No 59
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=58.21 E-value=1.1e+02 Score=29.80 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=21.4
Q ss_pred CCCCCEEEEeCCC------CEEEEEcCCc
Q 019135 2 DDKGNLYVADTLN------LAIRKIGDAG 24 (345)
Q Consensus 2 D~~GnIYVADt~N------hrIRkId~dG 24 (345)
+.+|.+||++-.. ++|++++.+|
T Consensus 93 ~~~g~~~is~E~~~~~~~~p~I~~~~~~G 121 (326)
T PF13449_consen 93 PPDGSFWISSEGGRTGGIPPRIRRFDLDG 121 (326)
T ss_pred ecCCCEEEEeCCccCCCCCCEEEEECCCC
Confidence 4689999999999 9999999999
No 60
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=57.50 E-value=38 Score=33.99 Aligned_cols=56 Identities=27% Similarity=0.293 Sum_probs=35.6
Q ss_pred EEEEeCCCCEEEEEcCCc---eEEEecCCCCCCCCCCCCcCccccCCCcccEEECCCC-cEEEEeCCCCEEEEEeCCCC
Q 019135 7 LYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGNAALRQISLNQD 81 (345)
Q Consensus 7 IYVADt~NhrIRkId~dG---VsTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG-~LYVADtgNhrIRKis~dG~ 81 (345)
+||+.. ...|-+||... +.++.-| ..|.+|+ ++.+| .|||++...+.|..|+...-
T Consensus 51 ~yv~~r-dg~vsviD~~~~~~v~~i~~G-----------------~~~~~i~-~s~DG~~~~v~n~~~~~v~v~D~~tl 110 (369)
T PF02239_consen 51 LYVANR-DGTVSVIDLATGKVVATIKVG-----------------GNPRGIA-VSPDGKYVYVANYEPGTVSVIDAETL 110 (369)
T ss_dssp EEEEET-TSEEEEEETTSSSEEEEEE-S-----------------SEEEEEE-E--TTTEEEEEEEETTEEEEEETTT-
T ss_pred EEEEcC-CCeEEEEECCcccEEEEEecC-----------------CCcceEE-EcCCCCEEEEEecCCCceeEeccccc
Confidence 777764 35677777643 3333322 1378898 67777 48889999999999986553
No 61
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=50.80 E-value=44 Score=37.03 Aligned_cols=84 Identities=14% Similarity=0.131 Sum_probs=62.2
Q ss_pred CCCEEEEeCCCCEEEEEcCCc-e-EEEecCCCCCCCCCCCCcCccccCCCcccEEECCCCcEEEEeCC-CCEEEEEeCCC
Q 019135 4 KGNLYVADTLNLAIRKIGDAG-V-TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRG-NAALRQISLNQ 80 (345)
Q Consensus 4 ~GnIYVADt~NhrIRkId~dG-V-sTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG~LYVADtg-NhrIRKis~dG 80 (345)
.+++|.+|..++.|.+.+.+| . .+++.. .+..|..+++....|.+|.+|++ ..+|-+-.++|
T Consensus 491 ~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~---------------~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg 555 (877)
T KOG1215|consen 491 GDNIYWTDEGNCLIEVADLDGSSRKVLVSK---------------DLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDG 555 (877)
T ss_pred cCCceecccCCceeEEEEccCCceeEEEec---------------CCCCccceeeccccCeeEEecCCCCchhhhhcCCC
Confidence 457999999999999999887 3 455542 13568889844566899999998 66899999999
Q ss_pred Cee-eeccc-CCCCcceEEEeccc
Q 019135 81 DDC-EYQYN-SISPTDILMVVGAV 102 (345)
Q Consensus 81 ~~~-t~~~~-~~~p~gI~~~~~a~ 102 (345)
..- +.... ...|.|++++....
T Consensus 556 ~~~~~l~~~~~~~p~glt~d~~~~ 579 (877)
T KOG1215|consen 556 SERAVLVTNGILWPNGLTIDYETD 579 (877)
T ss_pred CCceEEEeCCccCCCcceEEeecc
Confidence 743 33332 46788888887654
No 62
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=48.46 E-value=83 Score=27.68 Aligned_cols=60 Identities=20% Similarity=0.169 Sum_probs=35.2
Q ss_pred CCCCEEEEeCCCCEEEEEcC-Cc-e--EEEecCCCCCCCCCCCCcCccccCCCcccEEECCCCcEEEEeCCCCEEEEEe-
Q 019135 3 DKGNLYVADTLNLAIRKIGD-AG-V--TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQIS- 77 (345)
Q Consensus 3 ~~GnIYVADt~NhrIRkId~-dG-V--sTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG~LYVADtgNhrIRKis- 77 (345)
.+|.||+++ .++.|+.+|. +| + .....+ .+..+ .+ -.++.|||....| .|+.++
T Consensus 35 ~~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~~---------------~~~~~--~~--~~~~~v~v~~~~~-~l~~~d~ 93 (238)
T PF13360_consen 35 DGGRVYVAS-GDGNLYALDAKTGKVLWRFDLPG---------------PISGA--PV--VDGGRVYVGTSDG-SLYALDA 93 (238)
T ss_dssp ETTEEEEEE-TTSEEEEEETTTSEEEEEEECSS---------------CGGSG--EE--EETTEEEEEETTS-EEEEEET
T ss_pred eCCEEEEEc-CCCEEEEEECCCCCEEEEeeccc---------------cccce--ee--eccccccccccee-eeEeccc
Confidence 356777773 6777888885 66 2 222211 11111 12 2466788888555 888898
Q ss_pred CCCCee
Q 019135 78 LNQDDC 83 (345)
Q Consensus 78 ~dG~~~ 83 (345)
.+|+..
T Consensus 94 ~tG~~~ 99 (238)
T PF13360_consen 94 KTGKVL 99 (238)
T ss_dssp TTSCEE
T ss_pred CCccee
Confidence 777754
No 63
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=42.36 E-value=21 Score=37.83 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=31.9
Q ss_pred cccCCCcccEEECCCCcEEEEeCCCCEEEEEeCCCC
Q 019135 46 AKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD 81 (345)
Q Consensus 46 A~Fn~P~gIA~VDsdG~LYVADtgNhrIRKis~dG~ 81 (345)
..|--|.+|. +|.||..|++|-..|.+.|..+.++
T Consensus 464 ~~fylphgl~-~dkdgf~~~tdvash~v~k~k~~~~ 498 (501)
T KOG3567|consen 464 NLFYLPHGLS-IDKDGFYWVTDVASHQVFKLKPNNK 498 (501)
T ss_pred CceecCCcce-ecCCCcEEeecccchhhhhcccccc
Confidence 5799999996 9999999999999999999988775
No 64
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=42.31 E-value=1.6e+02 Score=32.73 Aligned_cols=92 Identities=15% Similarity=0.091 Sum_probs=62.6
Q ss_pred CCEEEEeCCCCEEEEEcCCce--EEEecCCCCCCCCCCCCcCccccCCCcccEEECCCCcEEEEeCCCCEEEEEeCCCCe
Q 019135 5 GNLYVADTLNLAIRKIGDAGV--TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDD 82 (345)
Q Consensus 5 GnIYVADt~NhrIRkId~dGV--sTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG~LYVADtgNhrIRKis~dG~~ 82 (345)
+.+|.+|..-.+|-....++. ..+.+ .....|.++|+.--.+++|-+|.+++.|.+.+++|..
T Consensus 449 ~~i~~~d~~~~~i~~~~~~~~~~~~~~~---------------~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~ 513 (877)
T KOG1215|consen 449 NRIYWADLSDEKICRASQDGSSECELCG---------------DGLCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSS 513 (877)
T ss_pred CEEEEEeccCCeEeeeccCCCccceEec---------------cCccccCcEEEEeccCCceecccCCceeEEEEccCCc
Confidence 357777777777776666661 22222 1245688898444667999999999999999988864
Q ss_pred --eeecccCCCCcceEEEeccceeEEEEeecc
Q 019135 83 --CEYQYNSISPTDILMVVGAVLVGYVTCMLQ 112 (345)
Q Consensus 83 --~t~~~~~~~p~gI~~~~~a~~lgYvs~~~~ 112 (345)
+........|..|+++-.. ++.|.+.|+.
T Consensus 514 ~~vl~~~~l~~~r~~~v~p~~-g~~~wtd~~~ 544 (877)
T KOG1215|consen 514 RKVLVSKDLDLPRSIAVDPEK-GLMFWTDWGQ 544 (877)
T ss_pred eeEEEecCCCCccceeecccc-CeeEEecCCC
Confidence 3333333556666666544 6999999995
No 65
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=41.53 E-value=32 Score=33.64 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=29.9
Q ss_pred CCcccEEECCCCcEEEEeCCC------CEEEEEeCCCCee
Q 019135 50 NDFDVVYVRPTCSLLVIDRGN------AALRQISLNQDDC 83 (345)
Q Consensus 50 ~P~gIA~VDsdG~LYVADtgN------hrIRKis~dG~~~ 83 (345)
.+-+|+ ++.+|.+||++-++ ++|++++.+|...
T Consensus 86 D~Egi~-~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~ 124 (326)
T PF13449_consen 86 DPEGIA-VPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVI 124 (326)
T ss_pred ChhHeE-EecCCCEEEEeCCccCCCCCCEEEEECCCCccc
Confidence 678999 48999999999999 9999999999863
No 66
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=40.32 E-value=48 Score=35.29 Aligned_cols=106 Identities=15% Similarity=0.131 Sum_probs=68.4
Q ss_pred CCCCCCEEEEeCCCCEEEEEcCCc--eEEEecCCCCCCCCCCCCcCccccCCCcccEEECCCCcEEEEeCC-CCEEEEEe
Q 019135 1 MDDKGNLYVADTLNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRG-NAALRQIS 77 (345)
Q Consensus 1 VD~~GnIYVADt~NhrIRkId~dG--VsTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG~LYVADtg-NhrIRKis 77 (345)
+|.+|+..++|-..|-++++.+.. +....|+ |...| .....|..|..++ +.++|.|.|+|.. |-+|-+..
T Consensus 175 ~df~~~~d~TgV~mH~t~kp~pkla~~~L~l~~-----~tvp~-~~~~~f~~~tsc~-v~~n~~ihvfa~r~hTh~Lgk~ 247 (501)
T KOG3567|consen 175 IDFDGNYDVTGVGMHQTEKPQPKLAKTMLLLGD-----GTVPG-EGTKHFETPTSCA-VEENGPIHVFAYRCHTHILGKV 247 (501)
T ss_pred cCCCCCcccccceeeeeccCCchhhceEEeecC-----CccCC-CCccccCCCceEE-EecCcceeeEEeeeeehhhcce
Confidence 467889999999999999998764 3333332 22222 1236799999998 7889999999965 55676777
Q ss_pred CCCCeeeec---------cc-C-----CCCcceEEEeccceeEEEEeeccc
Q 019135 78 LNQDDCEYQ---------YN-S-----ISPTDILMVVGAVLVGYVTCMLQQ 113 (345)
Q Consensus 78 ~dG~~~t~~---------~~-~-----~~p~gI~~~~~a~~lgYvs~~~~~ 113 (345)
..|.....- .. + .-+..-++.++.+-.+-|.|.++.
T Consensus 248 vsG~lv~q~~~g~w~~ig~r~Pq~pqlf~~v~~~~~iadgD~~~vrC~~~s 298 (501)
T KOG3567|consen 248 VSGYLVAQKHEGHWTLIGRRDPQLPQLFEPVNHIVCVADGDNQRVRCFFQS 298 (501)
T ss_pred eeeeEeeeccCcceeeccccCCCchhhhcCCCcceeeecCCceEEEEEEcc
Confidence 766653211 00 0 123343555566667777777764
No 67
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=39.38 E-value=3e+02 Score=28.30 Aligned_cols=101 Identities=17% Similarity=0.112 Sum_probs=60.8
Q ss_pred CCCCCC-EEEEeCCCCEEEEEcC-CceEEEecCCCCCCCCCCCCcCccccCCCcccEEECCCC-cEEEEeCCCCEEEEEe
Q 019135 1 MDDKGN-LYVADTLNLAIRKIGD-AGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGNAALRQIS 77 (345)
Q Consensus 1 VD~~Gn-IYVADt~NhrIRkId~-dGVsTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG-~LYVADtgNhrIRKis 77 (345)
++++|+ |.+.|-+.-||..++. +|..+.+.-.--..| ..|..|+| -++| -.|+..--|+.|-++.
T Consensus 152 ~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G-----------~GPRHi~F-Hpn~k~aY~v~EL~stV~v~~ 219 (346)
T COG2706 152 FTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPG-----------AGPRHIVF-HPNGKYAYLVNELNSTVDVLE 219 (346)
T ss_pred eCCCCCEEEEeecCCceEEEEEcccCccccccccccCCC-----------CCcceEEE-cCCCcEEEEEeccCCEEEEEE
Confidence 366774 7788988999988874 563333321000112 24899995 5555 5799999999999887
Q ss_pred CCCC---eeeecccCCCC--------cceEEEeccceeEEEEeeccc
Q 019135 78 LNQD---DCEYQYNSISP--------TDILMVVGAVLVGYVTCMLQQ 113 (345)
Q Consensus 78 ~dG~---~~t~~~~~~~p--------~gI~~~~~a~~lgYvs~~~~~ 113 (345)
.++. +...+.-...| .+-+-+...+=|.|++.-+-.
T Consensus 220 y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~d 266 (346)
T COG2706 220 YNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHD 266 (346)
T ss_pred EcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCC
Confidence 6663 33333322222 122344556778898865554
No 68
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=38.59 E-value=86 Score=30.69 Aligned_cols=62 Identities=13% Similarity=0.057 Sum_probs=37.7
Q ss_pred CCCEEEEeCCCCEEEEEcCCc--eEEEecCCCCCCCCCCCCcCccccCCCcccEEECCCCcEEEEeC
Q 019135 4 KGNLYVADTLNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDR 68 (345)
Q Consensus 4 ~GnIYVADt~NhrIRkId~dG--VsTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG~LYVADt 68 (345)
+|.||---+...+|.+|+++. |....-- ++-.-..+ ......+-++|||+++..+.+||+-.
T Consensus 185 dG~lyANVw~t~~I~rI~p~sGrV~~widl-S~L~~~~~--~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 185 DGELYANVWQTTRIARIDPDSGRVVAWIDL-SGLLKELN--LDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred ccEEEEeeeeecceEEEcCCCCcEEEEEEc-cCCchhcC--ccccccccccceeecCcCCeEEEecC
Confidence 467777667788999999864 5332211 11000011 11134678899998777779999754
No 69
>PF05586 Ant_C: Anthrax receptor C-terminus region; InterPro: IPR008399 Anthrax is an acute disease in humans and animals caused by the bacterium Bacillus anthracis, which can be lethal. There are effective vaccines against anthrax, and some forms of the disease respond well to antibiotic treatment. The anthrax bacillus is one of only a few that can form long-lived spores. The anthrax toxin consists of the proteins protective antigen (PA) lethal factor (LF) and oedema factor (EF). The first step of toxin entry into host cells is the recognition by PA of a receptor on the surface of the target cell. The subsequent cleavage of receptor-bound PA enables EF and LF to bind and form a heptameric PA63 pre-pore, which triggers endocytosis. PA has been shown to bind to two cellular receptors: anthrax toxin receptor/tumour endothelial marker 8 and capillary morphogenesis protein 2 (CMG2), which are closely related host cell receptors. Both bind to PA with high affinity and are capable of mediating toxicity [, ], and both are type 1 membrane proteins that include an approximately 200-aa extracellular von Willebrand factor A (VWA) domain with a metal ion-dependent adhesion site (MIDAS) motif []. This region is found in the putatively cytoplasmic C terminus of the anthrax receptor.; GO: 0004872 receptor activity, 0016021 integral to membrane
Probab=38.54 E-value=32 Score=28.98 Aligned_cols=38 Identities=26% Similarity=0.552 Sum_probs=24.5
Q ss_pred cccccCCCCCCCCcccccccCCCCCcccccccCCCCCCCCCCCC
Q 019135 202 RDTLRMPEDEAAPPVVQRQKSAVPLSETHQVRTPGTGDKYPDMK 245 (345)
Q Consensus 202 ~~~~~~p~d~~~p~~~~r~~~~~~~~~~~~~~~pt~~~~y~~~~ 245 (345)
.-...|||+|.+|++..+ +|+. ...|.|+.+|-|...|
T Consensus 20 NA~V~mpeee~E~~~~~~----~~~~--~~~~~~~~~kWYtPIK 57 (95)
T PF05586_consen 20 NAVVKMPEEEFEPPMIRP----PPKP--PPTHKPPQRKWYTPIK 57 (95)
T ss_pred CceEeCCcccccCccCCC----CCCC--CCCCCCCCCcCccCcc
Confidence 346789988888875542 1221 2346777888887665
No 70
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=37.71 E-value=1.3e+02 Score=29.51 Aligned_cols=69 Identities=16% Similarity=0.054 Sum_probs=43.0
Q ss_pred CCCCCCEEEEeCCCCEEEEEcCCceEEEecCCCCCCCCCCCCcCccccCCCcccEEECCCCcEEEEeCCCCEEEEEeC-C
Q 019135 1 MDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISL-N 79 (345)
Q Consensus 1 VD~~GnIYVADt~NhrIRkId~dGVsTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG~LYVADtgNhrIRKis~-d 79 (345)
++.+|.||++ ..+.+|.-+|+++...+.-... .+ ....++.|.-+ .+|.|||.+... .+..++. +
T Consensus 65 ~~~dg~v~~~-~~~G~i~A~d~~~g~~~W~~~~--~~------~~~~~~~~~~~----~~G~i~~g~~~g-~~y~ld~~~ 130 (370)
T COG1520 65 ADGDGTVYVG-TRDGNIFALNPDTGLVKWSYPL--LG------AVAQLSGPILG----SDGKIYVGSWDG-KLYALDAST 130 (370)
T ss_pred EeeCCeEEEe-cCCCcEEEEeCCCCcEEecccC--cC------cceeccCceEE----eCCeEEEecccc-eEEEEECCC
Confidence 3568889998 4555888888877332210000 00 11345555433 388999999776 8888888 7
Q ss_pred CCee
Q 019135 80 QDDC 83 (345)
Q Consensus 80 G~~~ 83 (345)
|+.+
T Consensus 131 G~~~ 134 (370)
T COG1520 131 GTLV 134 (370)
T ss_pred CcEE
Confidence 8754
No 71
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=31.26 E-value=2.3e+02 Score=30.42 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=27.4
Q ss_pred cCccccCCCcc-cEEECCCCcEEEEeCC-CCEEEEEeCCCCee
Q 019135 43 SEDAKFSNDFD-VVYVRPTCSLLVIDRG-NAALRQISLNQDDC 83 (345)
Q Consensus 43 a~~A~Fn~P~g-IA~VDsdG~LYVADtg-NhrIRKis~dG~~~ 83 (345)
..+-.|++..- |.++..+|+|||.|-+ |+|++++.-+|.++
T Consensus 347 v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~ 389 (514)
T KOG2055|consen 347 VSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVH 389 (514)
T ss_pred EeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccc
Confidence 33344554443 3334568899999955 88899998888664
No 72
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=28.83 E-value=2.6e+02 Score=23.40 Aligned_cols=10 Identities=20% Similarity=0.262 Sum_probs=5.7
Q ss_pred CCCEEEEeCC
Q 019135 4 KGNLYVADTL 13 (345)
Q Consensus 4 ~GnIYVADt~ 13 (345)
+|.|+|-|..
T Consensus 198 ~~~i~i~d~~ 207 (289)
T cd00200 198 DGTIKLWDLS 207 (289)
T ss_pred CCcEEEEECC
Confidence 4556666654
No 73
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=28.00 E-value=2.1e+02 Score=23.36 Aligned_cols=20 Identities=15% Similarity=0.340 Sum_probs=12.8
Q ss_pred CcccEEECCCCcEEEEeCCCC
Q 019135 51 DFDVVYVRPTCSLLVIDRGNA 71 (345)
Q Consensus 51 P~gIA~VDsdG~LYVADtgNh 71 (345)
+..+. +.++|+|.+.|..+.
T Consensus 87 ~~~~~-L~ddGnlvl~~~~~~ 106 (114)
T smart00108 87 NYVLV-LLDDGNLVIYDSDGN 106 (114)
T ss_pred ceEEE-EeCCCCEEEECCCCC
Confidence 33343 677888888776543
No 74
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=27.41 E-value=3.5e+02 Score=26.55 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=23.5
Q ss_pred CCCcEEEEeCCCCEEEEEeCCCCe-eee
Q 019135 59 PTCSLLVIDRGNAALRQISLNQDD-CEY 85 (345)
Q Consensus 59 sdG~LYVADtgNhrIRKis~dG~~-~t~ 85 (345)
++|+++|....+.||-.++++|++ |.+
T Consensus 269 ~nGn~li~~g~~g~~~E~~~~G~vv~~~ 296 (299)
T PF14269_consen 269 PNGNVLIGWGNNGRISEFTPDGEVVWEA 296 (299)
T ss_pred CCCCEEEecCCCceEEEECCCCCEEEEE
Confidence 679999999999999999999985 443
No 75
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=27.04 E-value=2.5e+02 Score=29.03 Aligned_cols=68 Identities=19% Similarity=0.306 Sum_probs=43.5
Q ss_pred CCCCCEEEEeCCCCEEEEEcCC--c--e-EEEecCCCCCCCCCCCCcCccccCCCcccEEE---CCCCcEEEEeCCCCEE
Q 019135 2 DDKGNLYVADTLNLAIRKIGDA--G--V-TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYV---RPTCSLLVIDRGNAAL 73 (345)
Q Consensus 2 D~~GnIYVADt~NhrIRkId~d--G--V-sTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~V---DsdG~LYVADtgNhrI 73 (345)
|..|.|||++-. .-|++++.+ + . +.++.. ...++ -...-||++. +.+|.|+|++-+|+..
T Consensus 217 De~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~--~g~~l---------~aDvEGlaly~~~~g~gYLivSsQG~~sf 284 (381)
T PF02333_consen 217 DETGRLYVGEED-VGIWRYDAEPEGGNDRTLVASA--DGDGL---------VADVEGLALYYGSDGKGYLIVSSQGDNSF 284 (381)
T ss_dssp TTTTEEEEEETT-TEEEEEESSCCC-S--EEEEEB--SSSSB----------S-EEEEEEEE-CCC-EEEEEEEGGGTEE
T ss_pred cccCCEEEecCc-cEEEEEecCCCCCCcceeeecc--ccccc---------ccCccceEEEecCCCCeEEEEEcCCCCeE
Confidence 567889999854 789999864 2 1 333211 00111 1235677754 2457899999999999
Q ss_pred EEEeCCCC
Q 019135 74 RQISLNQD 81 (345)
Q Consensus 74 RKis~dG~ 81 (345)
.+|+..+.
T Consensus 285 ~Vy~r~~~ 292 (381)
T PF02333_consen 285 AVYDREGP 292 (381)
T ss_dssp EEEESSTT
T ss_pred EEEecCCC
Confidence 99998874
No 76
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=24.64 E-value=2.2e+02 Score=23.41 Aligned_cols=14 Identities=14% Similarity=0.233 Sum_probs=9.3
Q ss_pred ECCCCcEEEEeCCC
Q 019135 57 VRPTCSLLVIDRGN 70 (345)
Q Consensus 57 VDsdG~LYVADtgN 70 (345)
+.++|+|.+-|..+
T Consensus 93 L~ddGnlvl~~~~~ 106 (116)
T cd00028 93 LLDDGNLVLYDSDG 106 (116)
T ss_pred EeCCCCEEEECCCC
Confidence 56777777776543
No 77
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=23.97 E-value=1.1e+02 Score=23.22 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=22.0
Q ss_pred cccEEECCCCcEEEEeCC-------CCEEEEEeCCCCe-eee
Q 019135 52 FDVVYVRPTCSLLVIDRG-------NAALRQISLNQDD-CEY 85 (345)
Q Consensus 52 ~gIA~VDsdG~LYVADtg-------NhrIRKis~dG~~-~t~ 85 (345)
.+|+ +.++|.|+|+=.. ...|-+++++|.. .+|
T Consensus 4 ~~~~-~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGsLDttF 44 (55)
T TIGR02608 4 YAVA-VQSDGKILVAGYVDNSSGNNDFVLARLNADGSLDTTF 44 (55)
T ss_pred EEEE-ECCCCcEEEEEEeecCCCcccEEEEEECCCCCccCCc
Confidence 4566 6788888887642 2337788888873 444
No 78
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=20.88 E-value=5.8e+02 Score=25.20 Aligned_cols=65 Identities=14% Similarity=0.126 Sum_probs=38.8
Q ss_pred CCEEEEeCCCCEEEEEcCCc--e-EEEecCCCCCCCCCCCCcCccccCCCcccEEECCCCcEEEEeCCCCEEEEEeCCCC
Q 019135 5 GNLYVADTLNLAIRKIGDAG--V-TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD 81 (345)
Q Consensus 5 GnIYVADt~NhrIRkId~dG--V-sTiAGg~~g~~G~~DG~a~~A~Fn~P~gIA~VDsdG~LYVADtgNhrIRKis~dG~ 81 (345)
..||++|. .++|+.+|++. + .++--. .+| .....=+.+-|+ +|.||--=+...+|-+|++...
T Consensus 140 ~~Li~SDG-S~~L~~~dP~~f~~~~~i~V~-------~~g----~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG 205 (264)
T PF05096_consen 140 KRLIMSDG-SSRLYFLDPETFKEVRTIQVT-------DNG----RPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETG 205 (264)
T ss_dssp SCEEEE-S-SSEEEEE-TTT-SEEEEEE-E-------ETT----EE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-
T ss_pred CEEEEECC-ccceEEECCcccceEEEEEEE-------ECC----EECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCC
Confidence 35777774 78899999866 2 222100 011 123344566665 6889999999999999998876
Q ss_pred ee
Q 019135 82 DC 83 (345)
Q Consensus 82 ~~ 83 (345)
.+
T Consensus 206 ~V 207 (264)
T PF05096_consen 206 KV 207 (264)
T ss_dssp BE
T ss_pred eE
Confidence 54
No 79
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=20.43 E-value=8.2e+02 Score=26.83 Aligned_cols=21 Identities=14% Similarity=0.395 Sum_probs=13.7
Q ss_pred CCCEEEEeCCCCEEEEEcCCc
Q 019135 4 KGNLYVADTLNLAIRKIGDAG 24 (345)
Q Consensus 4 ~GnIYVADt~NhrIRkId~dG 24 (345)
.|..+|-+...+.+.++...|
T Consensus 340 RGkaFi~~~~~~~~iqv~~~~ 360 (668)
T COG4946 340 RGKAFIMRPWDGYSIQVGKKG 360 (668)
T ss_pred cCcEEEECCCCCeeEEcCCCC
Confidence 567777777666666665555
Done!