BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019137
(345 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WU9|A Chain A, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
pdb|2WU9|B Chain B, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
Length = 442
Score = 577 bits (1487), Expect = e-165, Method: Compositional matrix adjust.
Identities = 279/343 (81%), Positives = 295/343 (86%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEG 60
MAAFYAGFPETV VRTVNRQCSSGLQ GFYDIGIGAGLESMT NPMAWEG
Sbjct: 98 MAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPMAWEG 157
Query: 61 SVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDE 120
SVNP VK F QAQNCLLPMGVTSENVA RFGV+R+EQDQAAVDSHRK GKFKDE
Sbjct: 158 SVNPAVKKFAQAQNCLLPMGVTSENVAQRFGVSRQEQDQAAVDSHRKAAAATAAGKFKDE 217
Query: 121 IIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDG 180
IIPV TK+VDPKTGDEKP+T+SVDDGIRP T+++ L KLKPVFKKDGTTTAGNSSQVSDG
Sbjct: 218 IIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTLASLGKLKPVFKKDGTTTAGNSSQVSDG 277
Query: 181 AGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDL 240
AGAVLLMKRSVAM+KGLP+LGVFRTFAAVGVDPAIM K+AGL+LDDIDL
Sbjct: 278 AGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDPAIMGIGPAVAIPAAVKAAGLELDDIDL 337
Query: 241 FEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDC 300
FEINEAFASQFVYCRNKLGLDPEKINVNGGA+AIGHPLG TGARCVATLLHEMKRRG+DC
Sbjct: 338 FEINEAFASQFVYCRNKLGLDPEKINVNGGAMAIGHPLGATGARCVATLLHEMKRRGKDC 397
Query: 301 RFGVISMCIGTGMGAAAVFERGDCADELCNVRKVESNNFLSKD 343
RFGV+SMCIGTGMGAAAVFERGD DEL N RKVE+ LSKD
Sbjct: 398 RFGVVSMCIGTGMGAAAVFERGDGVDELRNARKVEAQGLLSKD 440
>pdb|2C7Y|A Chain A, Plant Enzyme
pdb|2C7Y|B Chain B, Plant Enzyme
pdb|2C7Z|A Chain A, Plant Enzyme Crystal Form Ii
Length = 404
Score = 554 bits (1428), Expect = e-158, Method: Compositional matrix adjust.
Identities = 267/323 (82%), Positives = 282/323 (87%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEG 60
MAAFYAGFPETV VRTVNRQCSSGLQ GFYDIGIGAGLESMT NPMAWEG
Sbjct: 81 MAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPMAWEG 140
Query: 61 SVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDE 120
SVNP VK F QAQNCLLPMGVTSENVA RFGV+R+EQDQAAVDSHRK GKFKDE
Sbjct: 141 SVNPAVKKFAQAQNCLLPMGVTSENVAQRFGVSRQEQDQAAVDSHRKAAAATAAGKFKDE 200
Query: 121 IIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDG 180
IIPV TK+VDPKTGDEKP+T+SVDDGIRP T+++ L KLKPVFKKDGTTTAGNSSQVSDG
Sbjct: 201 IIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTLASLGKLKPVFKKDGTTTAGNSSQVSDG 260
Query: 181 AGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDL 240
AGAVLLMKRSVAM+KGLP+LGVFRTFAAVGVDPAIM K+AGL+LDDIDL
Sbjct: 261 AGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDPAIMGIGPAVAIPAAVKAAGLELDDIDL 320
Query: 241 FEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDC 300
FEINEAFASQFVYCRNKLGLDPEKINVNGGA+AIGHPLG TGARCVATLLHEMKRRG+DC
Sbjct: 321 FEINEAFASQFVYCRNKLGLDPEKINVNGGAMAIGHPLGATGARCVATLLHEMKRRGKDC 380
Query: 301 RFGVISMCIGTGMGAAAVFERGD 323
RFGV+SMCIGTGMGAAAVFERGD
Sbjct: 381 RFGVVSMCIGTGMGAAAVFERGD 403
>pdb|2WUA|A Chain A, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
pdb|2WUA|B Chain B, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
Length = 440
Score = 552 bits (1423), Expect = e-157, Method: Compositional matrix adjust.
Identities = 261/332 (78%), Positives = 285/332 (85%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEG 60
MAAFYAGFPETVPVRTVNRQCSSGLQ GFYDIGIGAGLESMT NPMAWEG
Sbjct: 101 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTANPMAWEG 160
Query: 61 SVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDE 120
SVNPKVK QAQ+CLLPMG+TSENVA +F +TR+EQDQAAV SHRK G+FKDE
Sbjct: 161 SVNPKVKTMAQAQDCLLPMGITSENVAQKFSITRQEQDQAAVGSHRKTAAATAAGRFKDE 220
Query: 121 IIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDG 180
IIP+ TKIVDPKTGDEKPVTISVDDGIRP TS+++LAKLKPVF+KDG+TTAG SSQVSDG
Sbjct: 221 IIPIKTKIVDPKTGDEKPVTISVDDGIRPGTSLADLAKLKPVFRKDGSTTAGTSSQVSDG 280
Query: 181 AGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDL 240
AGAVLLMKRS+A++KGLPILGVFRTFAAVGV P+IM K+AGLQ+DDIDL
Sbjct: 281 AGAVLLMKRSIALQKGLPILGVFRTFAAVGVPPSIMGIGPAVAIPAAVKAAGLQIDDIDL 340
Query: 241 FEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDC 300
FEINEAFASQFVYC+ KL +DP+KINVNGGA+AIGHPLG TGARCVATLLHEMKRRGRDC
Sbjct: 341 FEINEAFASQFVYCQKKLEIDPQKINVNGGAMAIGHPLGATGARCVATLLHEMKRRGRDC 400
Query: 301 RFGVISMCIGTGMGAAAVFERGDCADELCNVR 332
RFGV+SMCIGTGMGAAAVFERGD DELCN +
Sbjct: 401 RFGVVSMCIGTGMGAAAVFERGDACDELCNAK 432
>pdb|2IIK|A Chain A, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
pdb|2IIK|B Chain B, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
Length = 418
Score = 345 bits (886), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 175/320 (54%), Positives = 226/320 (70%), Gaps = 2/320 (0%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEG 60
+A F + PETVP+ TVNRQCSSGLQ G YDIG+ G+ESM++ G
Sbjct: 97 IAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLADRGNPG 156
Query: 61 SVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDE 120
++ ++ E+A++CL+PMG+TSENVA RFG++R++QD A+ S +K G F+ E
Sbjct: 157 NITSRLMEKEKARDCLIPMGITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAE 216
Query: 121 IIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDG 180
I+PV T + D K G ++ +T++ D+GIRP+T++ LAKLKP FKKDG+TTAGNSSQVSDG
Sbjct: 217 IVPVTTTVHDDK-GTKRSITVTQDEGIRPSTTMEGLAKLKPAFKKDGSTTAGNSSQVSDG 275
Query: 181 AGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDL 240
A A+LL +RS A GLPILGV R++A VGV P IM + AGL + D+D+
Sbjct: 276 AAAILLARRSKAEELGLPILGVLRSYAVVGVPPDIMGIGPAYAIPVALQKAGLTVSDVDI 335
Query: 241 FEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDC 300
FEINEAFASQ YC KL L PEK+N GGA+A+GHPLG TGAR V TLL+E+KRRG+
Sbjct: 336 FEINEAFASQAAYCVEKLRLPPEKVNPLGGAVALGHPLGCTGARQVITLLNELKRRGKRA 395
Query: 301 RFGVISMCIGTGMGAAAVFE 320
+GV+SMCIGTGMGAAAVFE
Sbjct: 396 -YGVVSMCIGTGMGAAAVFE 414
>pdb|1AFW|A Chain A, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
pdb|1AFW|B Chain B, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
Length = 393
Score = 274 bits (700), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 150/324 (46%), Positives = 202/324 (62%), Gaps = 21/324 (6%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMT-----VNPM 56
A +G P + P +NRQCSSGL G DIG+ G+ESMT VNP+
Sbjct: 82 ACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVESMTNNYKNVNPL 141
Query: 57 AWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGK 116
S +++ +A+ CL+PMG+T+ENVA F ++RK+QD+ A +S++K G
Sbjct: 142 GMISS--EELQKNREAKKCLIPMGITNENVAANFKISRKDQDEFAANSYQKAYKAKNEGL 199
Query: 117 FKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKD-GTTTAGNSS 175
F+DEI+P+ K+ D D+G RPN + L+ ++P F KD GTTTAGN+S
Sbjct: 200 FEDEILPI--KLPDGSICQS-------DEGPRPNVTAESLSSIRPAFIKDRGTTTAGNAS 250
Query: 176 QVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQL 235
QVSDG VLL +RSVA + LP+LG + F VGV P IM ++ GLQ+
Sbjct: 251 QVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIMGVGPAYAIPKVLEATGLQV 310
Query: 236 DDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKR 295
DID+FEINEAFA+Q +YC +KLG+D K+N GGA+A+GHPLG TGAR VAT+L E+K+
Sbjct: 311 QDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGAIALGHPLGCTGARQVATILRELKK 370
Query: 296 RGRDCRFGVISMCIGTGMGAAAVF 319
+ GV+SMCIGTGMGAAA+F
Sbjct: 371 D----QIGVVSMCIGTGMGAAAIF 390
>pdb|1PXT|A Chain A, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
pdb|1PXT|B Chain B, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
Length = 390
Score = 273 bits (699), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 150/324 (46%), Positives = 202/324 (62%), Gaps = 21/324 (6%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMT-----VNPM 56
A +G P + P +NRQCSSGL G DIG+ G+ESMT VNP+
Sbjct: 79 ACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVESMTNNYKNVNPL 138
Query: 57 AWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGK 116
S +++ +A+ CL+PMG+T+ENVA F ++RK+QD+ A +S++K G
Sbjct: 139 GMISS--EELQKNREAKKCLIPMGITNENVAANFKISRKDQDEFAANSYQKAYKAKNEGL 196
Query: 117 FKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKD-GTTTAGNSS 175
F+DEI+P+ K+ D D+G RPN + L+ ++P F KD GTTTAGN+S
Sbjct: 197 FEDEILPI--KLPDGSICQS-------DEGPRPNVTAESLSSIRPAFIKDRGTTTAGNAS 247
Query: 176 QVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQL 235
QVSDG VLL +RSVA + LP+LG + F VGV P IM ++ GLQ+
Sbjct: 248 QVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIMGVGPAYAIPKVLEATGLQV 307
Query: 236 DDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKR 295
DID+FEINEAFA+Q +YC +KLG+D K+N GGA+A+GHPLG TGAR VAT+L E+K+
Sbjct: 308 QDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGAIALGHPLGCTGARQVATILRELKK 367
Query: 296 RGRDCRFGVISMCIGTGMGAAAVF 319
+ GV+SMCIGTGMGAAA+F
Sbjct: 368 D----QIGVVSMCIGTGMGAAAIF 387
>pdb|1ULQ|A Chain A, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|B Chain B, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|C Chain C, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|D Chain D, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|E Chain E, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|F Chain F, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|G Chain G, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|H Chain H, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
Length = 401
Score = 225 bits (574), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 137/343 (39%), Positives = 189/343 (55%), Gaps = 36/343 (10%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMA--- 57
MA AGFP V TVNR C SGL+ G + IG+G+ESM+ P A
Sbjct: 69 MALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSRAPYAVPK 128
Query: 58 ------------------WEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQ 99
W VNPK++A ++ MG T+EN+A +G+ R+EQD+
Sbjct: 129 PERGFPTGNLVMYDTTLGWR-FVNPKMQALYGTES----MGETAENLAEMYGIRREEQDR 183
Query: 100 AAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKL 159
A+ SH+K G+F+DE++PV K G E+ + + D+G R +TS+ +LA L
Sbjct: 184 FALLSHQKAVRAWEEGRFQDEVVPVPVK-----RGKEE-ILVEQDEGPRRDTSLEKLAAL 237
Query: 160 KPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXX 219
+PVF++ GT TAGNSS ++DGA AVLL+ A GL L R A GV P IM
Sbjct: 238 RPVFREGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARVRAIAVAGVPPRIMGIG 297
Query: 220 XXXXXXXXXKSAGLQLDDIDLFEINEAFASQ--FVYCRNKLGLDPEKINVNGGALAIGHP 277
+ AGL D+ L E+NEAFA+Q V L ++ +++N NGGA+A+GHP
Sbjct: 298 PVPATRKALERAGLSFSDLGLIELNEAFAAQALAVLREWSLSMEDQRLNPNGGAIALGHP 357
Query: 278 LGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 320
LG +GAR + TL+HEM+R R +FG+ +MCIG G G A V E
Sbjct: 358 LGASGARILTTLVHEMRR--RKVQFGLATMCIGVGQGIAVVVE 398
>pdb|1DLU|A Chain A, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|B Chain B, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|C Chain C, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|D Chain D, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLV|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
Length = 389
Score = 225 bits (573), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 131/329 (39%), Positives = 180/329 (54%), Gaps = 18/329 (5%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGS 61
AA AG P+ +N+ C SGL+ G I + G+ESM++ P
Sbjct: 67 AAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLR 126
Query: 62 VNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXX 111
K+ F+ + MG T+ENVA ++ ++R EQD AV S K
Sbjct: 127 GGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAA 186
Query: 112 XXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTA 171
G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K+GT TA
Sbjct: 187 QKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTA 240
Query: 172 GNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSA 231
GN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M + A
Sbjct: 241 GNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERA 300
Query: 232 GLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLH 291
G ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIGHP+G +GAR + TLL
Sbjct: 301 GWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLF 360
Query: 292 EMKRRGRDCRFGVISMCIGTGMGAAAVFE 320
EMKRRG R G+ ++CIG GMG A E
Sbjct: 361 EMKRRG--ARKGLATLCIGGGMGVAMCIE 387
>pdb|1M1T|A Chain A, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|B Chain B, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|C Chain C, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|D Chain D, Biosynthetic Thiolase, Q64a Mutant
Length = 392
Score = 225 bits (573), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 131/329 (39%), Positives = 180/329 (54%), Gaps = 18/329 (5%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGS 61
AA AG P+ +N+ C SGL+ G I + G+ESM++ P
Sbjct: 70 AAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLR 129
Query: 62 VNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXX 111
K+ F+ + MG T+ENVA ++ ++R EQD AV S K
Sbjct: 130 GGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAA 189
Query: 112 XXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTA 171
G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K+GT TA
Sbjct: 190 QKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTA 243
Query: 172 GNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSA 231
GN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M + A
Sbjct: 244 GNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERA 303
Query: 232 GLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLH 291
G ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIGHP+G +GAR + TLL
Sbjct: 304 GWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLF 363
Query: 292 EMKRRGRDCRFGVISMCIGTGMGAAAVFE 320
EMKRRG R G+ ++CIG GMG A E
Sbjct: 364 EMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2VU2|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate
Length = 392
Score = 225 bits (573), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 131/329 (39%), Positives = 180/329 (54%), Gaps = 18/329 (5%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGS 61
AA AG P+ +N+ C SGL+ G I + G+ESM++ P
Sbjct: 70 AAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLR 129
Query: 62 VNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXX 111
K+ F+ + MG T+ENVA ++ ++R EQD AV S K
Sbjct: 130 GGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAA 189
Query: 112 XXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTA 171
G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K+GT TA
Sbjct: 190 QKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTA 243
Query: 172 GNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSA 231
GN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M + A
Sbjct: 244 GNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERA 303
Query: 232 GLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLH 291
G ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIGHP+G +GAR + TLL
Sbjct: 304 GWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLF 363
Query: 292 EMKRRGRDCRFGVISMCIGTGMGAAAVFE 320
EMKRRG R G+ ++CIG GMG A E
Sbjct: 364 EMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2WKU|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant
Length = 392
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/329 (39%), Positives = 180/329 (54%), Gaps = 18/329 (5%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGS 61
AA AG P+ +N+ C SGL+ G I + G+ESM++ P
Sbjct: 70 AAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLR 129
Query: 62 VNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXX 111
K+ F+ + MG T+ENVA ++ ++R EQD AV S K
Sbjct: 130 GGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAA 189
Query: 112 XXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTA 171
G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K+GT TA
Sbjct: 190 QKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTA 243
Query: 172 GNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSA 231
GN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M + A
Sbjct: 244 GNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERA 303
Query: 232 GLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLH 291
G ++ D+DL E +EAFA+Q LG DP +NVNGGA+AIGHP+G +GAR + TLL
Sbjct: 304 GWKIGDLDLVEAHEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLF 363
Query: 292 EMKRRGRDCRFGVISMCIGTGMGAAAVFE 320
EMKRRG R G+ ++CIG GMG A E
Sbjct: 364 EMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2WKV|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A
Length = 392
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/329 (39%), Positives = 180/329 (54%), Gaps = 18/329 (5%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGS 61
AA AG P+ +N+ C SGL+ G I + G+ESM++ P
Sbjct: 70 AAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLR 129
Query: 62 VNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXX 111
K+ F+ + MG T+ENVA ++ ++R EQD AV S K
Sbjct: 130 GGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAA 189
Query: 112 XXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTA 171
G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K+GT TA
Sbjct: 190 QKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTA 243
Query: 172 GNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSA 231
GN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M + A
Sbjct: 244 GNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERA 303
Query: 232 GLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLH 291
G ++ D+DL E +EAFA+Q LG DP +NVNGGA+AIGHP+G +GAR + TLL
Sbjct: 304 GWKIGDLDLVEADEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLF 363
Query: 292 EMKRRGRDCRFGVISMCIGTGMGAAAVFE 320
EMKRRG R G+ ++CIG GMG A E
Sbjct: 364 EMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2WL5|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 222 bits (565), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 130/329 (39%), Positives = 180/329 (54%), Gaps = 18/329 (5%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGS 61
AA AG P+ +N+ C SGL+ G I + G+ESM++ P
Sbjct: 70 AAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLR 129
Query: 62 VNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXX 111
K+ F+ + MG T+ENVA ++ ++R EQD AV S K
Sbjct: 130 GGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAA 189
Query: 112 XXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTA 171
G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K+GT TA
Sbjct: 190 QKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTA 243
Query: 172 GNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSA 231
GN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M + A
Sbjct: 244 GNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERA 303
Query: 232 GLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLH 291
G ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIG+P+G +GAR + TLL
Sbjct: 304 GWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGNPIGASGARILNTLLF 363
Query: 292 EMKRRGRDCRFGVISMCIGTGMGAAAVFE 320
EMKRRG R G+ ++CIG GMG A E
Sbjct: 364 EMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|4DD5|A Chain A, Biosynthetic Thiolase (Thla1) From Clostridium Difficile
Length = 396
Score = 221 bits (564), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 125/330 (37%), Positives = 182/330 (55%), Gaps = 19/330 (5%)
Query: 3 AFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNP------- 55
A AG P P T+N C SGL+ G DI + G E+M+++P
Sbjct: 75 ALGAGIPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMSMSPYLVPSAR 134
Query: 56 ----MAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXX 111
M V+ +K MG+T+EN+A ++ +TR+EQD+ A+ S K
Sbjct: 135 YGARMGDAAFVDSMIKDGLSDIFNNYHMGITAENIAEQWNITREEQDELALASQNKAEKA 194
Query: 112 XXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTA 171
GKF +EI+PV K G + + D+ I+P T++ +LAKL+P FKKDGT TA
Sbjct: 195 QAEGKFDEEIVPVVIK------GRKGDTVVDKDEYIKPGTTMEKLAKLRPAFKKDGTVTA 248
Query: 172 GNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSA 231
GN+S ++DGA +++M + A G+ L ++ GVDP IM ++A
Sbjct: 249 GNASGINDGAAMLVVMAKEKAEELGIEPLATIVSYGTAGVDPKIMGYGPVPATKKALEAA 308
Query: 232 GLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLH 291
+ ++DIDL E NEAFA+Q V L +D K+NVNGGA+AIGHP+G +GAR + TLL+
Sbjct: 309 NMTIEDIDLVEANEAFAAQSVAVIRDLNIDMNKVNVNGGAIAIGHPIGCSGARILTTLLY 368
Query: 292 EMKRRGRDCRFGVISMCIGTGMGAAAVFER 321
EMKR RD + G+ ++CIG GMG + +R
Sbjct: 369 EMKR--RDAKTGLATLCIGGGMGTTLIVKR 396
>pdb|1M1O|A Chain A, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|B Chain B, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|C Chain C, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|D Chain D, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M3K|A Chain A, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|B Chain B, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|C Chain C, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|D Chain D, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3Z|A Chain A, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|B Chain B, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|C Chain C, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|D Chain D, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|2VTZ|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A
Length = 392
Score = 221 bits (563), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 130/329 (39%), Positives = 179/329 (54%), Gaps = 18/329 (5%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGS 61
AA AG P+ +N+ SGL+ G I + G+ESM++ P
Sbjct: 70 AAMKAGVPQEATAWGMNQLAGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLR 129
Query: 62 VNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXX 111
K+ F+ + MG T+ENVA ++ ++R EQD AV S K
Sbjct: 130 GGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAA 189
Query: 112 XXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTA 171
G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K+GT TA
Sbjct: 190 QKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTA 243
Query: 172 GNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSA 231
GN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M + A
Sbjct: 244 GNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERA 303
Query: 232 GLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLH 291
G ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIGHP+G +GAR + TLL
Sbjct: 304 GWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLF 363
Query: 292 EMKRRGRDCRFGVISMCIGTGMGAAAVFE 320
EMKRRG R G+ ++CIG GMG A E
Sbjct: 364 EMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2WL4|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 221 bits (563), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 130/329 (39%), Positives = 179/329 (54%), Gaps = 18/329 (5%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGS 61
AA AG P+ +N+ C SGL+ G I + G+ESM++ P
Sbjct: 70 AAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLR 129
Query: 62 VNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXX 111
K+ F+ + MG T+ENVA ++ ++R EQD AV S K
Sbjct: 130 GGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAA 189
Query: 112 XXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTA 171
G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K+GT TA
Sbjct: 190 QKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTA 243
Query: 172 GNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSA 231
GN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M + A
Sbjct: 244 GNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERA 303
Query: 232 GLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLH 291
G ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIG P+G +GAR + TLL
Sbjct: 304 GWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGARILNTLLF 363
Query: 292 EMKRRGRDCRFGVISMCIGTGMGAAAVFE 320
EMKRRG R G+ ++CIG GMG A E
Sbjct: 364 EMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|1M4S|A Chain A, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|B Chain B, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|C Chain C, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|D Chain D, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4T|A Chain A, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|B Chain B, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|C Chain C, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|D Chain D, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1NL7|A Chain A, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|B Chain B, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|C Chain C, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|D Chain D, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1OU6|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|2VU0|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU1|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate
Length = 392
Score = 221 bits (562), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 130/329 (39%), Positives = 179/329 (54%), Gaps = 18/329 (5%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGS 61
AA AG P+ +N+ SGL+ G I + G+ESM++ P
Sbjct: 70 AAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLR 129
Query: 62 VNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXX 111
K+ F+ + MG T+ENVA ++ ++R EQD AV S K
Sbjct: 130 GGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAA 189
Query: 112 XXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTA 171
G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K+GT TA
Sbjct: 190 QKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTA 243
Query: 172 GNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSA 231
GN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M + A
Sbjct: 244 GNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERA 303
Query: 232 GLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLH 291
G ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIGHP+G +GAR + TLL
Sbjct: 304 GWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLF 363
Query: 292 EMKRRGRDCRFGVISMCIGTGMGAAAVFE 320
EMKRRG R G+ ++CIG GMG A E
Sbjct: 364 EMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|1QFL|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1DM3|A Chain A, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|B Chain B, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|C Chain C, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|D Chain D, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
Length = 389
Score = 221 bits (562), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 130/329 (39%), Positives = 179/329 (54%), Gaps = 18/329 (5%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGS 61
AA AG P+ +N+ SGL+ G I + G+ESM++ P
Sbjct: 67 AAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLR 126
Query: 62 VNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXX 111
K+ F+ + MG T+ENVA ++ ++R EQD AV S K
Sbjct: 127 GGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAA 186
Query: 112 XXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTA 171
G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K+GT TA
Sbjct: 187 QKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTA 240
Query: 172 GNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSA 231
GN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M + A
Sbjct: 241 GNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERA 300
Query: 232 GLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLH 291
G ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIGHP+G +GAR + TLL
Sbjct: 301 GWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLF 360
Query: 292 EMKRRGRDCRFGVISMCIGTGMGAAAVFE 320
EMKRRG R G+ ++CIG GMG A E
Sbjct: 361 EMKRRG--ARKGLATLCIGGGMGVAMCIE 387
>pdb|2WL6|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant
Length = 392
Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 129/329 (39%), Positives = 180/329 (54%), Gaps = 18/329 (5%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGS 61
AA AG P+ +N+ C SGL+ G I + G+ESM++ P
Sbjct: 70 AAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLR 129
Query: 62 VNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXX 111
K+ F+ + MG T+ENVA ++ ++R EQD AV S K
Sbjct: 130 GGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAA 189
Query: 112 XXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTA 171
G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K+GT TA
Sbjct: 190 QKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTA 243
Query: 172 GNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSA 231
GN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M + A
Sbjct: 244 GNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERA 303
Query: 232 GLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLH 291
G ++ D+DL E +EAFA+Q LG DP +NVNGGA+AIG+P+G +GAR + TLL
Sbjct: 304 GWKIGDLDLVEAHEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGNPIGASGARILNTLLF 363
Query: 292 EMKRRGRDCRFGVISMCIGTGMGAAAVFE 320
EMKRRG R G+ ++CIG GMG A E
Sbjct: 364 EMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2WL5|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 218 bits (554), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 129/329 (39%), Positives = 179/329 (54%), Gaps = 18/329 (5%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGS 61
AA AG P+ +N+ SGL+ G I + G+ESM++ P
Sbjct: 70 AAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLR 129
Query: 62 VNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXX 111
K+ F+ + MG T+ENVA ++ ++R EQD AV S K
Sbjct: 130 GGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAA 189
Query: 112 XXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTA 171
G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K+GT TA
Sbjct: 190 QKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTA 243
Query: 172 GNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSA 231
GN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M + A
Sbjct: 244 GNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERA 303
Query: 232 GLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLH 291
G ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIG+P+G +GAR + TLL
Sbjct: 304 GWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGNPIGASGARILNTLLF 363
Query: 292 EMKRRGRDCRFGVISMCIGTGMGAAAVFE 320
EMKRRG R G+ ++CIG GMG A E
Sbjct: 364 EMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|3SS6|A Chain A, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
pdb|3SS6|B Chain B, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
Length = 394
Score = 217 bits (552), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 121/329 (36%), Positives = 177/329 (53%), Gaps = 18/329 (5%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMA---- 57
AA AGFP+TV T+ RQ SSG+Q G ++ + G+E+M+ +P A
Sbjct: 72 AALAAGFPDTVTGYTIQRQXSSGMQAIMSAAMQIQLGVSEVVVAGGVEAMSSSPYALKQH 131
Query: 58 -W-----EGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXX 111
W G + V + + MG T+EN+ ++ +TR+EQD+ A+ SH
Sbjct: 132 RWGQRLQHGEIRDTVWEVLEDPIHHIMMGETAENLVEQYEITREEQDEVALRSHTLALKA 191
Query: 112 XXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTA 171
G F D+I+P+ K K V S D+ R + + +LA LKP F+KDG+ TA
Sbjct: 192 IESGYFDDQIVPITIK------ERRKEVVFSKDEHPRADITAEKLAGLKPAFRKDGSVTA 245
Query: 172 GNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSA 231
GN+S ++DG+ ++LM A KGL L ++ GVDP IM +
Sbjct: 246 GNASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAGVDPKIMGIGPAPAIRKGLEKV 305
Query: 232 GLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLH 291
L+D DL EINEAFA+Q++ +L LD EK+NVNG + +GHP+G TGAR +L+H
Sbjct: 306 DWSLEDADLLEINEAFAAQYLAVEKELDLDREKVNVNGSGVGLGHPIGCTGARITVSLIH 365
Query: 292 EMKRRGRDCRFGVISMCIGTGMGAAAVFE 320
E+KRRG + G+ S+C+G G+G A E
Sbjct: 366 ELKRRGLEK--GIASLCVGGGIGVALFIE 392
>pdb|2WL4|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 217 bits (552), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 129/329 (39%), Positives = 178/329 (54%), Gaps = 18/329 (5%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGS 61
AA AG P+ +N+ SGL+ G I + G+ESM++ P
Sbjct: 70 AAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLR 129
Query: 62 VNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXX 111
K+ F+ + MG T+ENVA ++ ++R EQD AV S K
Sbjct: 130 GGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAA 189
Query: 112 XXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTA 171
G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K+GT TA
Sbjct: 190 QKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTA 243
Query: 172 GNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSA 231
GN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M + A
Sbjct: 244 GNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERA 303
Query: 232 GLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLH 291
G ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIG P+G +GAR + TLL
Sbjct: 304 GWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGARILNTLLF 363
Query: 292 EMKRRGRDCRFGVISMCIGTGMGAAAVFE 320
EMKRRG R G+ ++CIG GMG A E
Sbjct: 364 EMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2WL4|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 217 bits (552), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 129/329 (39%), Positives = 178/329 (54%), Gaps = 18/329 (5%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGS 61
AA AG P+ +N+ C SGL+ G I + G+ESM++ P
Sbjct: 70 AAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLR 129
Query: 62 VNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXX 111
K+ F+ + MG T+ENVA ++ ++R EQD AV S K
Sbjct: 130 GGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAA 189
Query: 112 XXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTA 171
G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K+GT TA
Sbjct: 190 QKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTA 243
Query: 172 GNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSA 231
GN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M + A
Sbjct: 244 GNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERA 303
Query: 232 GLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLH 291
G ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIG P+G +GAR + TLL
Sbjct: 304 GWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGARILNTLLF 363
Query: 292 EMKRRGRDCRFGVISMCIGTGMGAAAVFE 320
EMKRRG R G+ ++ IG GMG A E
Sbjct: 364 EMKRRG--ARKGLATLXIGGGMGVAMCIE 390
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 216 bits (549), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 127/335 (37%), Positives = 186/335 (55%), Gaps = 28/335 (8%)
Query: 3 AFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMT----VNPMAW 58
A AG P +VP TVN+ C SGL+ G D+ I G E+M+ + P A
Sbjct: 73 AINAGIPNSVPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMSQAPYIVPTAR 132
Query: 59 EGS------------VNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHR 106
GS + + AF Q MG+T+EN+A +F TR+ QD+ A++S
Sbjct: 133 FGSKMGNITMVDSMLTDGLIDAFNQYH-----MGITAENIATKFEFTREMQDKLALESQN 187
Query: 107 KXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKD 166
K +FK+EI+PV I + G K TI D+ + + L+KLKP FKKD
Sbjct: 188 KAENAIKNNRFKEEIVPVDVLI---RRG--KIETIDKDEYPKLGMTFEGLSKLKPAFKKD 242
Query: 167 GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXX 226
GT TAGN+S ++DGA ++LM + A G+ L +++A+ GV+P +M
Sbjct: 243 GTVTAGNASGINDGAAMLILMSQQKADELGIRPLAKIKSYASAGVEPEVMGTGPIPATRK 302
Query: 227 XXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCV 286
K AGL ++DIDL E NEAFA+Q + +N+L +D K+NVNGGA+A+GHP+G +GAR +
Sbjct: 303 ALKKAGLSINDIDLIEANEAFAAQALAVKNELQIDSSKLNVNGGAIALGHPIGASGARIL 362
Query: 287 ATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 321
TL++EM++ R G+ ++CIG G G + V R
Sbjct: 363 VTLIYEMQK--RKVETGLATLCIGGGQGISMVVSR 395
>pdb|2WL4|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 128/329 (38%), Positives = 177/329 (53%), Gaps = 18/329 (5%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGS 61
AA AG P+ +N+ SGL+ G I + G+ESM++ P
Sbjct: 70 AAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLR 129
Query: 62 VNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXX 111
K+ F+ + MG T+ENVA ++ ++R EQD AV S K
Sbjct: 130 GGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAA 189
Query: 112 XXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTA 171
G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K+GT TA
Sbjct: 190 QKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTA 243
Query: 172 GNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSA 231
GN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M + A
Sbjct: 244 GNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERA 303
Query: 232 GLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLH 291
G ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIG P+G +GAR + TLL
Sbjct: 304 GWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGARILNTLLF 363
Query: 292 EMKRRGRDCRFGVISMCIGTGMGAAAVFE 320
EMKRRG R G+ ++ IG GMG A E
Sbjct: 364 EMKRRG--ARKGLATLXIGGGMGVAMCIE 390
>pdb|2WKT|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 210 bits (534), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 130/329 (39%), Positives = 179/329 (54%), Gaps = 18/329 (5%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGS 61
AA AG P+ +N+ C SGL+ G I + G+ESM++ P
Sbjct: 70 AAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLR 129
Query: 62 VNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXX 111
K+ F+ + MG T+ENVA ++ ++R EQD AV S K
Sbjct: 130 GGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAA 189
Query: 112 XXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTA 171
G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K+GT TA
Sbjct: 190 QKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTA 243
Query: 172 GNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSA 231
GN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M + A
Sbjct: 244 GNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERA 303
Query: 232 GLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLH 291
G ++ D+DL E EAFA+Q LG DP +NVNGGA+AIGHP+G +GAR + TLL
Sbjct: 304 GWKIGDLDLVEAAEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLF 363
Query: 292 EMKRRGRDCRFGVISMCIGTGMGAAAVFE 320
EMKRRG R G+ ++CIG GMG A E
Sbjct: 364 EMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2WKT|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 129/329 (39%), Positives = 178/329 (54%), Gaps = 18/329 (5%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGS 61
AA AG P+ +N+ SGL+ G I + G+ESM++ P
Sbjct: 70 AAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLR 129
Query: 62 VNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXX 111
K+ F+ + MG T+ENVA ++ ++R EQD AV S K
Sbjct: 130 GGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAA 189
Query: 112 XXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTA 171
G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K+GT TA
Sbjct: 190 QKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDKEGTVTA 243
Query: 172 GNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSA 231
GN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M + A
Sbjct: 244 GNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERA 303
Query: 232 GLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLH 291
G ++ D+DL E EAFA+Q LG DP +NVNGGA+AIGHP+G +GAR + TLL
Sbjct: 304 GWKIGDLDLVEAAEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLF 363
Query: 292 EMKRRGRDCRFGVISMCIGTGMGAAAVFE 320
EMKRRG R G+ ++CIG GMG A E
Sbjct: 364 EMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|1WDK|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 390
Score = 201 bits (510), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 173/327 (52%), Gaps = 17/327 (5%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEG 60
MA+ P T +TV+R C S + G D+ + G+E M M
Sbjct: 74 MASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMGHVSMMHGV 133
Query: 61 SVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDE 120
NP + + + + MG+T+E + G++R++QD AV SH+ GKFKDE
Sbjct: 134 DPNPHMSLYAAKASGM--MGLTAEMLGKMHGISREQQDAFAVRSHQLAHKATVEGKFKDE 191
Query: 121 IIPVATKIVDPKTGDEKPV--TISVDDGIRPNTSVSELAKLKPVFK-KDGTTTAGNSSQV 177
IIP+ + DE D+ IRP+T++ LA LKP F K GT TAG SSQ+
Sbjct: 192 IIPM-------QGYDENGFLKIFDYDETIRPDTTLESLAALKPAFNPKGGTVTAGTSSQI 244
Query: 178 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDD 237
+DGA +++M A GL L V R+ A GVDPAIM K AGL + D
Sbjct: 245 TDGASCMIVMSAQRAKDLGLEPLAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLNMAD 304
Query: 238 IDLFEINEAFASQFVYCRNKLG-LDP--EKINVNGGALAIGHPLGTTGARCVATLLHEMK 294
ID E+NEAFA+Q + L LD EK+N++GGA+A+GHP G +GAR TLL+ MK
Sbjct: 305 IDFIELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 364
Query: 295 RRGRDCRFGVISMCIGTGMGAAAVFER 321
+ G FG+ +MCIG G G A VFER
Sbjct: 365 QNG--GTFGLSTMCIGLGQGIATVFER 389
>pdb|1WL4|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase Complexed With
Coa
pdb|1WL5|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase
Length = 397
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 120/334 (35%), Positives = 179/334 (53%), Gaps = 24/334 (7%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGS 61
A+ AG P +VP + SGL+ G I + G+E+M+ P
Sbjct: 73 ASVGAGIPYSVPAWSCQMIXGSGLKAVCLAVQSIGIGDSSIVVAGGMENMSKAPHLAYLR 132
Query: 62 VNPKVKAF------------EQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXX 109
K+ + NC MG+T+ENVA ++ V+R++QD+ AV S +
Sbjct: 133 TGVKIGEMPLTDSILCDGLTDAFHNC--HMGITAENVAKKWQVSREDQDKVAVLSQNRTE 190
Query: 110 XXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGT- 168
G F EI+PV +V + G + + D+ R +++ ++KLKP F DGT
Sbjct: 191 NAQKAGHFDKEIVPV---LVSTRKG---LIEVKTDEFPRHGSNIEAMSKLKPYFLTDGTG 244
Query: 169 -TTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXX 227
T N+S ++DGA AV+LMK+S A ++GL L +++ VGV+P+IM
Sbjct: 245 TVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVEPSIMGIGPIPAIKQA 304
Query: 228 XKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVA 287
AG L+D+D+FEINEAFA+ +LGL+PEK+N+ GGA+A+GHPLG +G R +
Sbjct: 305 VTKAGWSLEDVDIFEINEAFAAVSAAIVKELGLNPEKVNIEGGAIALGHPLGASGCRILV 364
Query: 288 TLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 321
TLLH ++R GR GV ++CIG GMG A +R
Sbjct: 365 TLLHTLERMGRS--RGVAALCIGGGMGIAMCVQR 396
>pdb|3GOA|A Chain A, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
pdb|3GOA|B Chain B, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
Length = 387
Score = 190 bits (483), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 127/324 (39%), Positives = 165/324 (50%), Gaps = 13/324 (4%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGS 61
AA A P +VP TVNR C S Q G + + G+E P +
Sbjct: 72 AALLAEIPHSVPAVTVNRLCGSSXQALHDAARXIXTGDAQVCLVGGVEHXGHVPXSHGVD 131
Query: 62 VNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEI 121
+P + G+T+E ++ G++R+ QDQ A SH + G FK EI
Sbjct: 132 FHPGLS--RNVAKAAGXXGLTAEXLSRLHGISREXQDQFAARSHARAWAATQSGAFKTEI 189
Query: 122 IPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK-DGTTTAGNSSQVSDG 180
IP D G K + D+ IRP T+V L+ L+P F GT TAG SS +SDG
Sbjct: 190 IPTGGHDAD---GVLK--QFNYDEVIRPETTVEALSTLRPAFDPVSGTVTAGTSSALSDG 244
Query: 181 AGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDL 240
A A L+ S A GL R+ A VG DP+I K AGL DID+
Sbjct: 245 AAAXLVXSESRARELGLKPRARIRSXAVVGCDPSIXGYGPVPASKLALKKAGLSASDIDV 304
Query: 241 FEINEAFASQFVYCRNKLGLDP---EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRG 297
FE NEAFA+Q + C LGL EKIN+NGGA+A+GHPLG +GAR TL++ +R
Sbjct: 305 FEXNEAFAAQILPCIKDLGLXEQIDEKINLNGGAIALGHPLGCSGARISTTLINLXER-- 362
Query: 298 RDCRFGVISMCIGTGMGAAAVFER 321
+D +FG+ + CIG G G A VFER
Sbjct: 363 KDAQFGLATXCIGLGQGIATVFER 386
>pdb|3SVK|A Chain A, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
pdb|3SVK|B Chain B, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
Length = 407
Score = 174 bits (440), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 114/344 (33%), Positives = 167/344 (48%), Gaps = 38/344 (11%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEG- 60
A AG PET +NR C+SGL+ G+ D+ + G+ESM+ PM +G
Sbjct: 77 AVLAAGLPETTGGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGVESMSRVPMGSDGG 136
Query: 61 --SVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFK 118
+ +P+ + +P G+ ++ +A G +R++ D A+ S +K G F
Sbjct: 137 AWATDPET----NYRIGFVPQGIGADLIATLEGFSREDVDAYALRSQQKAAAAWSGGYFA 192
Query: 119 DEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF--------------- 163
++PV + V + D+ +RP+T++ LAKLK F
Sbjct: 193 KSVVPVRDQ--------NGLVILDHDEHMRPDTTMEGLAKLKTAFDGVGEMGGFDDVALQ 244
Query: 164 ------KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMX 217
K + T GNSS + DGA VL+ +GL A G DP IM
Sbjct: 245 KYHWVEKINHVHTGGNSSGIVDGAALVLVGSEKAGKSQGLTPRARIVATATSGSDPVIML 304
Query: 218 XXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHP 277
AGL +DDIDLFE+NEAFAS + + L + EK+NVNGGA+A+GHP
Sbjct: 305 TGPTPATRKVLDRAGLTIDDIDLFELNEAFASVVLKFQKDLNIPDEKLNVNGGAIAMGHP 364
Query: 278 LGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 321
LG TGA T++ E++R R+ R +I++CIG GMG A + ER
Sbjct: 365 LGATGAMITGTMVDELER--RNARRALITLCIGGGMGVATIIER 406
>pdb|2IB7|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 102/330 (30%), Positives = 162/330 (49%), Gaps = 20/330 (6%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGS 61
A AG P + P T+N+ C+SG++ G D+ + G+ESM+ P
Sbjct: 75 AVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSNVPYVMNRG 134
Query: 62 VNPK---------VKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXX 112
P VK + MG +EN A + + R EQD A++S+ +
Sbjct: 135 STPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAINSYTRSKAAW 194
Query: 113 XXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKD-GTTTA 171
GKF +E+IPV + +P + +D S++ KLK VF+K+ GT TA
Sbjct: 195 EAGKFGNEVIPVTVTV------KGQPDVVVKEDEEYKRVDFSKVPKLKTVFQKENGTVTA 248
Query: 172 GNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSA 231
N+S ++DGA A++LM A R + L FA V+P K
Sbjct: 249 ANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVYAASMVLKDV 308
Query: 232 GLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLH 291
GL+ +DI ++E+NEAF+ + L +DP+K+N+NGGA+++GHP+G +GAR V L H
Sbjct: 309 GLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVGHLTH 368
Query: 292 EMKRRGRDCRFGVISMCIGTGMGAAAVFER 321
+K+ +G+ S+C G G +A + ++
Sbjct: 369 ALKQ----GEYGLASICNGGGGASAMLIQK 394
>pdb|2IBU|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 160 bits (406), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 101/330 (30%), Positives = 161/330 (48%), Gaps = 20/330 (6%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGS 61
A AG P + P T+N+ +SG++ G D+ + G+ESM+ P
Sbjct: 75 AVLGAGLPISTPCTTINKVXASGMKAIMMASQSLMCGHQDVMVAGGMESMSNVPYVMNRG 134
Query: 62 VNPK---------VKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXX 112
P VK + MG +EN A + + R EQD A++S+ +
Sbjct: 135 STPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAINSYTRSKAAW 194
Query: 113 XXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKD-GTTTA 171
GKF +E+IPV + +P + +D S++ KLK VF+K+ GT TA
Sbjct: 195 EAGKFGNEVIPVTVTV------KGQPDVVVKEDEEYKRVDFSKVPKLKTVFQKENGTVTA 248
Query: 172 GNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSA 231
N+S ++DGA A++LM A R + L FA V+P K
Sbjct: 249 ANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVYAASMVLKDV 308
Query: 232 GLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLH 291
GL+ +DI ++E+NEAF+ + L +DP+K+N+NGGA+++GHP+G +GAR V L H
Sbjct: 309 GLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVGHLTH 368
Query: 292 EMKRRGRDCRFGVISMCIGTGMGAAAVFER 321
+K+ +G+ S+C G G +A + ++
Sbjct: 369 ALKQ----GEYGLASICNGGGGASAMLIQK 394
>pdb|2F2S|A Chain A, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|B Chain B, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|C Chain C, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|D Chain D, Human Mitochondrial Acetoacetyl-Coa Thiolase
Length = 406
Score = 160 bits (405), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 101/330 (30%), Positives = 161/330 (48%), Gaps = 20/330 (6%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGS 61
A AG P + P T+N+ +SG++ G D+ + G+ESM+ P
Sbjct: 86 AVLGAGLPISTPCTTINKVXASGMKAIMMASQSLMCGHQDVMVAGGMESMSNVPYVMNRG 145
Query: 62 VNPK---------VKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXX 112
P VK + MG +EN A + + R EQD A++S+ +
Sbjct: 146 STPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAINSYTRSKAAW 205
Query: 113 XXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKD-GTTTA 171
GKF +E+IPV + +P + +D S++ KLK VF+K+ GT TA
Sbjct: 206 EAGKFGNEVIPVTVTV------KGQPDVVVKEDEEYKRVDFSKVPKLKTVFQKENGTVTA 259
Query: 172 GNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSA 231
N+S ++DGA A++LM A R + L FA V+P K
Sbjct: 260 ANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVYAASMVLKDV 319
Query: 232 GLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLH 291
GL+ +DI ++E+NEAF+ + L +DP+K+N+NGGA+++GHP+G +GAR V L H
Sbjct: 320 GLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVGHLTH 379
Query: 292 EMKRRGRDCRFGVISMCIGTGMGAAAVFER 321
+K+ +G+ S+C G G +A + ++
Sbjct: 380 ALKQ----GEYGLASICNGGGGASAMLIQK 405
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 147 IRPNTSVS--ELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMR 194
++PNTSV L L P TAGN S+G AVLL K+S+A R
Sbjct: 194 LKPNTSVQFLRLGMLSPEGTCKAFDTAGNGYCRSEGVVAVLLTKKSLARR 243
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 177 VSDGAGAVLLMKRSVAMRKGLPILGVFR 204
+++GAG ++L + S A R+G P+L V R
Sbjct: 262 LAEGAGVLVLQRLSAARREGRPVLAVLR 289
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 169 TTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD 212
TT N + GAG ++M+ +A++ G+PI G+ AA D
Sbjct: 1370 TTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIV-AMAATATD 1412
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 169 TTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD 212
TT N + GAG ++M+ +A++ G+PI G+ AA D
Sbjct: 1370 TTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIV-AMAATATD 1412
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 169 TTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD 212
TT N + GAG ++M+ +A++ G+PI G+ AA D
Sbjct: 1171 TTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIV-AMAATATD 1213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,168,321
Number of Sequences: 62578
Number of extensions: 347859
Number of successful extensions: 831
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 686
Number of HSP's gapped (non-prelim): 45
length of query: 345
length of database: 14,973,337
effective HSP length: 100
effective length of query: 245
effective length of database: 8,715,537
effective search space: 2135306565
effective search space used: 2135306565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)