RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 019137
(345 letters)
>gnl|CDD|215161 PLN02287, PLN02287, 3-ketoacyl-CoA thiolase.
Length = 452
Score = 694 bits (1792), Expect = 0.0
Identities = 296/338 (87%), Positives = 324/338 (95%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 60
MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAG+ESMT NPMAWEG
Sbjct: 114 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGVESMTTNPMAWEG 173
Query: 61 SVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDE 120
VNP+V++F QAQ+CLLPMG+TSENVA RFGVTR+EQDQAAV+SHRKAAAATA+GKFKDE
Sbjct: 174 GVNPRVESFSQAQDCLLPMGITSENVAERFGVTREEQDQAAVESHRKAAAATASGKFKDE 233
Query: 121 IIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDG 180
I+PV TKIVDPKTG+EKP+ ISVDDGIRPNT++++LAKLKPVFKK+GTTTAGNSSQVSDG
Sbjct: 234 IVPVHTKIVDPKTGEEKPIVISVDDGIRPNTTLADLAKLKPVFKKNGTTTAGNSSQVSDG 293
Query: 181 AGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDL 240
AGAVLLMKRSVAM+KGLPILGVFR+FAAVGVDPA+MG+GPAVAIPAAVK+AGL+LDDIDL
Sbjct: 294 AGAVLLMKRSVAMQKGLPILGVFRSFAAVGVDPAVMGIGPAVAIPAAVKAAGLELDDIDL 353
Query: 241 FEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDC 300
FEINEAFASQFVYC KLGLDPEK+NVNGGA+A+GHPLG TGARCVATLLHEMKRRG+DC
Sbjct: 354 FEINEAFASQFVYCCKKLGLDPEKVNVNGGAIALGHPLGATGARCVATLLHEMKRRGKDC 413
Query: 301 RFGVISMCIGTGMGAAAVFERGDCADELCNVRKVESNN 338
RFGV+SMCIGTGMGAAAVFERGD DEL N RKVE NN
Sbjct: 414 RFGVVSMCIGTGMGAAAVFERGDSVDELSNARKVEGNN 451
>gnl|CDD|238383 cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze
the reversible thiolytic cleavage of 3-ketoacyl-CoA into
acyl-CoA and acetyl-CoA, a 2-step reaction involving a
covalent intermediate formed with a catalytic cysteine.
They are found in prokaryotes and eukaryotes (cytosol,
microbodies and mitochondria). There are 2 functional
different classes: thiolase-I (3-ketoacyl-CoA thiolase)
and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I
can cleave longer fatty acid molecules and plays an
important role in the beta-oxidative degradation of
fatty acids. Thiolase-II has a high substrate
specificity. Although it can cleave acetoacyl-CoA, its
main function is the synthesis of acetoacyl-CoA from two
molecules of acetyl-CoA, which gives it importance in
several biosynthetic pathways.
Length = 386
Score = 455 bits (1174), Expect = e-161
Identities = 175/331 (52%), Positives = 220/331 (66%), Gaps = 18/331 (5%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 60
AA AG PE+VP TVNR C SGLQAVA A +I AG D+ + G+ESM+ P
Sbjct: 64 QAALLAGLPESVPATTVNRVCGSGLQAVALAAQSIAAGEADVVVAGGVESMSRAPYLLPK 123
Query: 61 SVNPK----------VKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAA 110
+ + L MG+T+ENVA ++G++R+EQD+ A+ SH++AAA
Sbjct: 124 ARRGGRLGLNTLDGMLDDGLTDPFTGLSMGITAENVAEKYGISREEQDEFALRSHQRAAA 183
Query: 111 ATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTT 170
A AG+FKDEI+PV G + PV + D+G RP+T++ +LAKLKP FKKDGT T
Sbjct: 184 AQEAGRFKDEIVPVEVP------GRKGPVVVDRDEGPRPDTTLEKLAKLKPAFKKDGTVT 237
Query: 171 AGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKS 230
AGN+S ++DGA AVLLM A GL L +A GVDPAIMG+GP AIP A+K
Sbjct: 238 AGNASGINDGAAAVLLMSEEKAKELGLKPLARIVGYAVAGVDPAIMGIGPVPAIPKALKR 297
Query: 231 AGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLL 290
AGL LDDIDL EINEAFA+Q + C +LGLDPEK+NVNGGA+A+GHPLG +GAR V TLL
Sbjct: 298 AGLTLDDIDLIEINEAFAAQALACLKELGLDPEKVNVNGGAIALGHPLGASGARIVVTLL 357
Query: 291 HEMKRRGRDCRFGVISMCIGTGMGAAAVFER 321
HE+KRRG R+G+ +MCIG G GAA V ER
Sbjct: 358 HELKRRG--GRYGLATMCIGGGQGAAMVIER 386
>gnl|CDD|233642 TIGR01930, AcCoA-C-Actrans, acetyl-CoA acetyltransferases. This
model represents a large family of enzymes which
catalyze the thiolysis of a linear fatty acid CoA (or
acetoacetyl-CoA) using a second CoA molecule to produce
acetyl-CoA and a CoA-ester product two carbons shorter
(or, alternatively, the condensation of two molecules of
acetyl-CoA to produce acetoacetyl-CoA and CoA). This
enzyme is also known as "thiolase", "3-ketoacyl-CoA
thiolase", "beta-ketothiolase" and "Fatty oxidation
complex beta subunit". When catalyzing the degradative
reaction on fatty acids the corresponding EC number is
2.3.1.16. The condensation reaction corresponds to
2.3.1.9. Note that the enzymes which catalyze the
condensation are generally not involved in fatty acid
biosynthesis, which is carried out by a decarboxylating
condensation of acetyl and malonyl esters of acyl
carrier proteins. Rather, this activity may produce
acetoacetyl-CoA for pathways such as IPP biosynthesis in
the absence of sufficient fatty acid oxidation [Fatty
acid and phospholipid metabolism, Other].
Length = 386
Score = 421 bits (1085), Expect = e-148
Identities = 168/332 (50%), Positives = 217/332 (65%), Gaps = 20/332 (6%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAW-- 58
AA AG PE+VP TVNRQC+SGLQAV A I+AG D+ + G+ESM+ P +
Sbjct: 63 QAALLAGLPESVPAYTVNRQCASGLQAVILAAQLIRAGEADVVVAGGVESMSRVPYSVPR 122
Query: 59 --EGSVNPKVKAFEQAQNCL--------LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKA 108
V P E L MG+T+EN+A ++G++R+EQD+ A+ SH++A
Sbjct: 123 SRRWGVKPGNAELEDQILKDGLDDPLNGLSMGLTAENLAKKYGISREEQDEYALRSHQRA 182
Query: 109 AAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGT 168
A A G FKDEI+PV + K PV +S D+GIRPNT++ +LAKLKP F +GT
Sbjct: 183 AKAWEEGLFKDEIVPV--SVKGRK----GPVVVSSDEGIRPNTTLEKLAKLKPAFDPNGT 236
Query: 169 TTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAV 228
TAGNSS ++DGA A+LLM A GL L ++A GVDP IMG+GP AIP A+
Sbjct: 237 VTAGNSSPLNDGAAALLLMSEEKAKELGLTPLARIVSYAVAGVDPEIMGLGPVPAIPKAL 296
Query: 229 KSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVAT 288
K AGL + DIDLFEINEAFA+Q + C +LGLD EK+NVNGGA+A+GHPLG +GAR V T
Sbjct: 297 KKAGLSISDIDLFEINEAFAAQVLACIKELGLDLEKVNVNGGAIALGHPLGASGARIVTT 356
Query: 289 LLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 320
LLHE+KRRG R+G+ ++CIG G G A + E
Sbjct: 357 LLHELKRRGG--RYGLATICIGGGQGIAVILE 386
>gnl|CDD|180261 PRK05790, PRK05790, putative acyltransferase; Provisional.
Length = 393
Score = 367 bits (946), Expect = e-126
Identities = 161/341 (47%), Positives = 213/341 (62%), Gaps = 36/341 (10%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNP----- 55
AA AG P VP T+N+ C SGL+AVA A AI+AG DI + G ESM+ P
Sbjct: 68 QAALKAGLPVEVPALTINKVCGSGLKAVALAAQAIRAGDADIVVAGGQESMSQAPHVLPG 127
Query: 56 ---------------MAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQA 100
M +G + AF MG+T+EN+A ++G+TR+EQD+
Sbjct: 128 SRWGQKMGDVELVDTMIHDGLTD----AFNG-----YHMGITAENLAEQYGITREEQDEF 178
Query: 101 AVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLK 160
A+ S +KA AA AG+FKDEI+PV K + GD PV + D+ RP+T+ LAKL+
Sbjct: 179 ALASQQKAEAAIKAGRFKDEIVPVTIKQ---RKGD--PVVVDTDEHPRPDTTAESLAKLR 233
Query: 161 PVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGP 220
P F KDGT TAGN+S ++DGA AV++M + A GL L ++A GVDPAIMG+GP
Sbjct: 234 PAFDKDGTVTAGNASGINDGAAAVVVMSEAKAKELGLTPLARIVSYAVAGVDPAIMGIGP 293
Query: 221 AVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGT 280
AI A++ AG L D+DL EINEAFA+Q + +LGLDPEK+NVNGGA+A+GHP+G
Sbjct: 294 VPAIRKALEKAGWSLADLDLIEINEAFAAQALAVEKELGLDPEKVNVNGGAIALGHPIGA 353
Query: 281 TGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 321
+GAR + TLLHEMKRRG + G+ ++CIG G G A + ER
Sbjct: 354 SGARILVTLLHEMKRRG--AKKGLATLCIGGGQGVALIVER 392
>gnl|CDD|181072 PRK07661, PRK07661, acetyl-CoA acetyltransferase; Provisional.
Length = 391
Score = 365 bits (940), Expect = e-126
Identities = 164/319 (51%), Positives = 212/319 (66%), Gaps = 6/319 (1%)
Query: 6 AGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGSVNPK 65
AG P TVP T+NR CSSGLQ++A A I G + I G ESM++ PM V P
Sbjct: 75 AGLPYTVPAITINRYCSSGLQSIAYGAERIMLGHSEAVIAGGAESMSLVPMMGH-VVRPN 133
Query: 66 VKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPV- 124
+ E A + MG T+E VA ++G++R++QD AV SH++AA A A GKF DEI+PV
Sbjct: 134 PRLVEAAPEYYMGMGHTAEQVAVKYGISREDQDAFAVRSHQRAAKALAEGKFADEIVPVD 193
Query: 125 --ATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAG 182
+ + E+ +T S D+G+R +T++ L KL+P F G+ TAGNSSQ+SDGA
Sbjct: 194 VTLRTVGENNKLQEETITFSQDEGVRADTTLEILGKLRPAFNVKGSVTAGNSSQMSDGAA 253
Query: 183 AVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFE 242
AVLLM R A GL L FR+FA GV P +MG+GP AIP A+K AGL+L DI LFE
Sbjct: 254 AVLLMDREKAESDGLKPLAKFRSFAVAGVPPEVMGIGPIAAIPKALKLAGLELSDIGLFE 313
Query: 243 INEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRF 302
+NEAFASQ + +LGLD EK+NVNGGA+A+GHPLG TGA+ +L+HEMKRR +F
Sbjct: 314 LNEAFASQSIQVIRELGLDEEKVNVNGGAIALGHPLGCTGAKLTLSLIHEMKRRNE--QF 371
Query: 303 GVISMCIGTGMGAAAVFER 321
G+++MCIG GMGAA VFE
Sbjct: 372 GIVTMCIGGGMGAAGVFEL 390
>gnl|CDD|181626 PRK09052, PRK09052, acetyl-CoA acetyltransferase; Provisional.
Length = 399
Score = 349 bits (898), Expect = e-119
Identities = 161/328 (49%), Positives = 219/328 (66%), Gaps = 11/328 (3%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 60
+ A AG P +V TVNR C+SGLQAVA A I+ G D+ I AG+ESM++ PM
Sbjct: 75 IGALLAGLPNSVGGVTVNRFCASGLQAVAMAADRIRVGEADVMIAAGVESMSMVPMMGNK 134
Query: 61 -SVNPKVKAFEQAQNCLLP--MGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKF 117
S++P + F + +N + MG+T+E VA ++ V+R++QD A++SH+KA AA AG+F
Sbjct: 135 PSMSPAI--FARDENVGIAYGMGLTAEKVAEQWKVSREDQDAFALESHQKAIAAQQAGEF 192
Query: 118 KDEIIP--VATKIVDPKTG--DEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGN 173
KDEI P + + D TG D K T+ +D+G R +TS+ LAKLKPVF G+ TAGN
Sbjct: 193 KDEITPYEITERFPDLATGEVDVKTRTVDLDEGPRADTSLEGLAKLKPVFANKGSVTAGN 252
Query: 174 SSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGL 233
SSQ SDGAGAV+L+ + L L F +FA GV P IMG+GP AIPAA+K AGL
Sbjct: 253 SSQTSDGAGAVILVSEKALKQFNLTPLARFVSFAVAGVPPEIMGIGPIEAIPAALKQAGL 312
Query: 234 QLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEM 293
+ DD+D E+NEAFA+Q + LGLDP K+N GGA+A+GHPLG TGA AT++H +
Sbjct: 313 KQDDLDWIELNEAFAAQSLAVIRDLGLDPSKVNPLGGAIALGHPLGATGAIRTATVVHGL 372
Query: 294 KRRGRDCRFGVISMCIGTGMGAAAVFER 321
+R ++G+++MC+GTGMGAA +FER
Sbjct: 373 RRTNL--KYGMVTMCVGTGMGAAGIFER 398
>gnl|CDD|180843 PRK07108, PRK07108, acetyl-CoA acetyltransferase; Provisional.
Length = 392
Score = 305 bits (783), Expect = e-102
Identities = 152/328 (46%), Positives = 208/328 (63%), Gaps = 19/328 (5%)
Query: 3 AFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTV------NPM 56
A AG P TVP TVNR CSSGLQ +A A + AG D+ + G+ES++ M
Sbjct: 72 ALRAGLPVTVPGMTVNRFCSSGLQTIALAAQRVIAGEGDVFVAGGVESISCVQNEMNRHM 131
Query: 57 AWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGK 116
EG + E M T+ENVA R+G++++ QD+ V S ++AAAA AAG+
Sbjct: 132 LREGWLV------EHKPEIYWSMLQTAENVAKRYGISKERQDEYGVQSQQRAAAAQAAGR 185
Query: 117 FKDEIIP--VATKIVDPKTGD--EKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAG 172
F DEI+P V + D TG K VT+S D+GIRP+T++ ++K++ G TAG
Sbjct: 186 FDDEIVPITVTAGVADKATGRLFTKEVTVSADEGIRPDTTLEGVSKIRSALP-GGVITAG 244
Query: 173 NSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAG 232
N+SQ SDGA A ++M VA R+GL LG+FR FA G +P MG+GP A+P +K AG
Sbjct: 245 NASQFSDGASACVVMNAKVAEREGLQPLGIFRGFAVAGCEPDEMGIGPVFAVPKLLKQAG 304
Query: 233 LQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHE 292
L++DDIDL+E+NEAFA Q +YCR+ LG+ +++NVNGGA+A+GHP G +GAR L E
Sbjct: 305 LKVDDIDLWELNEAFAVQVLYCRDTLGIPMDRLNVNGGAIAVGHPYGVSGARLTGHALIE 364
Query: 293 MKRRGRDCRFGVISMCIGTGMGAAAVFE 320
KRRG ++ V++MCIG G GAA +FE
Sbjct: 365 GKRRG--AKYVVVTMCIGGGQGAAGLFE 390
>gnl|CDD|181592 PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed.
Length = 387
Score = 303 bits (777), Expect = e-101
Identities = 147/326 (45%), Positives = 194/326 (59%), Gaps = 15/326 (4%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 60
AA AG P +VP TVNR C S +QA+ D A AI G D+ + G+E M PM
Sbjct: 71 NAALLAGIPHSVPAVTVNRLCGSSMQALHDAARAIMTGDGDVFLIGGVEHMGHVPMNHGV 130
Query: 61 SVNPKV-KAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKD 119
+P + K +A MG+T+E + G++R++QD A SH++A AAT G+FK+
Sbjct: 131 DFHPGLSKNVAKAAGM---MGLTAEMLGKMHGISREQQDAFAARSHQRAWAATQEGRFKN 187
Query: 120 EIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK-KDGTTTAGNSSQVS 178
EIIP + D D+ IRP T+V LA L+P F +GT TAG SS +S
Sbjct: 188 EIIPT-----EGHDADGVLKLFDYDEVIRPETTVEALAALRPAFDPVNGTVTAGTSSALS 242
Query: 179 DGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDI 238
DGA A+L+M S A GL R+ A G DP+IMG GP A A+K AGL + DI
Sbjct: 243 DGASAMLVMSESRAKELGLKPRARIRSMAVAGCDPSIMGYGPVPATQKALKRAGLSISDI 302
Query: 239 DLFEINEAFASQFVYCRNKLGL---DPEKINVNGGALAIGHPLGTTGARCVATLLHEMKR 295
D+FE+NEAFA+Q + C LGL EK+N+NGGA+A+GHPLG +GAR TLL+ M+R
Sbjct: 303 DVFELNEAFAAQSLPCLKDLGLLDKMDEKVNLNGGAIALGHPLGCSGARISTTLLNLMER 362
Query: 296 RGRDCRFGVISMCIGTGMGAAAVFER 321
+D +FG+ +MCIG G G A VFER
Sbjct: 363 --KDAQFGLATMCIGLGQGIATVFER 386
>gnl|CDD|181625 PRK09051, PRK09051, beta-ketothiolase; Provisional.
Length = 394
Score = 298 bits (766), Expect = 2e-99
Identities = 148/332 (44%), Positives = 205/332 (61%), Gaps = 19/332 (5%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT----VNPM 56
+AA AG P+ P VNR C SGLQA+ A AI G D+ IG G ESM+ + P
Sbjct: 70 VAAINAGVPQETPAFNVNRLCGSGLQAIVSAAQAILLGDADVAIGGGAESMSRAPYLLPA 129
Query: 57 AWEGSVNPKVKAFEQAQNCL------LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAA 110
A G+ K + L + MGVT+ENVA ++G++R+ QD A++SHR+AAA
Sbjct: 130 ARWGARMGDAKLVDMMVGALHDPFGTIHMGVTAENVAAKYGISREAQDALALESHRRAAA 189
Query: 111 ATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKD-GTT 169
A AAG FKD+I+PV K + G+ V D+ +R +T++ +LAKLKPVFKK+ GT
Sbjct: 190 AIAAGYFKDQIVPVEIKT---RKGE---VVFDTDEHVRADTTLEDLAKLKPVFKKENGTV 243
Query: 170 TAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVK 229
TAGN+S ++DGA AV+L + A +GL L +A GVDP MG+GP A A++
Sbjct: 244 TAGNASGINDGAAAVVLAEADAAEARGLKPLARLVGYAHAGVDPEYMGIGPVPATQKALE 303
Query: 230 SAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATL 289
AGL + D+D+ E NEAFA+Q +LGLDP K+N NG +++GHP+G TGA
Sbjct: 304 RAGLTVADLDVIEANEAFAAQACAVTRELGLDPAKVNPNGSGISLGHPVGATGAIITVKA 363
Query: 290 LHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 321
L+E++R G R+ +++MCIG G G AA+FER
Sbjct: 364 LYELQRIGG--RYALVTMCIGGGQGIAAIFER 393
>gnl|CDD|235741 PRK06205, PRK06205, acetyl-CoA acetyltransferase; Provisional.
Length = 404
Score = 284 bits (730), Expect = 7e-94
Identities = 143/341 (41%), Positives = 195/341 (57%), Gaps = 28/341 (8%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT-----VNPM 56
AA AG P TVP ++R+C SGLQAV A ++ G D+ I G ESM+ M
Sbjct: 69 AALDAGLPVTVPGMQLDRRCGSGLQAVITAAMQVQTGAADVVIAGGAESMSNVEFYTTDM 128
Query: 57 AW---EGSVNPK---VKAFEQAQNCLLP----MGVTSENVAHRFGVTRKEQDQAAVDSHR 106
W G V + E A P M T+EN+ +G++R+EQD AV SH+
Sbjct: 129 RWGVRGGGVQLHDRLARGRETAGGRRFPVPGGMIETAENLRREYGISREEQDALAVRSHQ 188
Query: 107 KAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK- 165
+A AA AG+F DEI+PV V + GD P + D+ R +T++ LAKL+P+ K
Sbjct: 189 RAVAAQEAGRFDDEIVPVT---VPQRKGD--PTVVDRDEHPRADTTLESLAKLRPIMGKQ 243
Query: 166 --DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVA 223
+ T TAGN+S +D A A L+ A GL L ++A GV+P+ MG+GP A
Sbjct: 244 DPEATVTAGNASGQNDAAAACLVTTEDKAEELGLRPLARLVSWAVAGVEPSRMGIGPVPA 303
Query: 224 IPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGL---DPEKINVNGGALAIGHPLGT 280
A+ AGL LDDIDL E+NEAFA+Q + + G D E++NVNG +++GHP+G
Sbjct: 304 TEKALARAGLTLDDIDLIELNEAFAAQVLAVLKEWGFGADDEERLNVNGSGISLGHPVGA 363
Query: 281 TGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 321
TG R +ATLL E++R R R+G+ +MCIG G G AAVFER
Sbjct: 364 TGGRILATLLRELQR--RQARYGLETMCIGGGQGLAAVFER 402
>gnl|CDD|180563 PRK06445, PRK06445, acetyl-CoA acetyltransferase; Provisional.
Length = 394
Score = 283 bits (725), Expect = 3e-93
Identities = 140/327 (42%), Positives = 190/327 (58%), Gaps = 14/327 (4%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 60
F A P +P V+RQC+S L V+ A I G DI I G+E MT PM
Sbjct: 75 HPIFLARLPYNIPAMAVDRQCASSLTTVSIGAMEIATGMADIVIAGGVEHMTRTPMGDNP 134
Query: 61 SVNPKVKAFEQAQ------NCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAA 114
+ P K + MG+T+E +A G+ R+E D+ ++ SH+ AA A
Sbjct: 135 HIEPNPKLLTDPKYIEYDLTTGYVMGLTAEKLAEEAGIKREEMDRWSLRSHQLAAKAIQE 194
Query: 115 GKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNS 174
G FKDEI+P+ ++ + K + VD +RP+TS+ +LAKL P FK DG TAGNS
Sbjct: 195 GYFKDEILPIEVEV------EGKKKVVDVDQSVRPDTSLEKLAKLPPAFKPDGVITAGNS 248
Query: 175 SQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQ 234
S ++ GA VLLM + + GL + R+F GV PAIMG GP A A++ AGL
Sbjct: 249 SPLNSGASYVLLMSKKAVKKYGLKPMAKIRSFGFAGVPPAIMGKGPVPASKKALEKAGLS 308
Query: 235 LDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMK 294
+ DIDL+EINEAFA +Y +LGLDPE +N+ GGA+AIGHPLG TGAR V TL +++
Sbjct: 309 VKDIDLWEINEAFAVVVLYAIKELGLDPETVNIKGGAIAIGHPLGATGARIVGTLARQLQ 368
Query: 295 RRGRDCRFGVISMCIGTGMGAAAVFER 321
+G+D +GV ++C+G G G A V ER
Sbjct: 369 IKGKD--YGVATLCVGGGQGGAVVLER 393
>gnl|CDD|181624 PRK09050, PRK09050, beta-ketoadipyl CoA thiolase; Validated.
Length = 401
Score = 280 bits (718), Expect = 5e-92
Identities = 150/347 (43%), Positives = 202/347 (58%), Gaps = 42/347 (12%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNP----- 55
M+A AG P +VP T+NR C SG+ AV A AIKAG ++ I G+ESM+ P
Sbjct: 70 MSALLAGLPVSVPGTTINRLCGSGMDAVGTAARAIKAGEAELMIAGGVESMSRAPFVMGK 129
Query: 56 ---------------MAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQA 100
+ W VNP +KA Q + M T+ENVA + ++R +QD
Sbjct: 130 ADSAFSRQAEIFDTTIGWR-FVNPLMKA----QYGVDSMPETAENVAEDYNISRADQDAF 184
Query: 101 AVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLK 160
A+ S ++AAAA AAG +EI+PV + K GD PV + D+ RP T++ LAKLK
Sbjct: 185 ALRSQQRAAAAQAAGFLAEEIVPVT---IPQKKGD--PVVVDRDEHPRPETTLEALAKLK 239
Query: 161 PVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLP----ILGVFRTFAAVGVDPAIM 216
PVF+ DGT TAGN+S V+DGA A+LL + A + GL ILG A GV+P IM
Sbjct: 240 PVFRPDGTVTAGNASGVNDGAAALLLASEAAAKKHGLTPRARILG----MATAGVEPRIM 295
Query: 217 GVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGL--DPEKINVNGGALAI 274
G+GPA A + GL +D D+ E+NEAFA+Q + +LGL D ++N NGGA+A+
Sbjct: 296 GIGPAPATRKLLARLGLTIDQFDVIELNEAFAAQGLAVLRQLGLADDDARVNPNGGAIAL 355
Query: 275 GHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 321
GHPLG +GAR V T LH+++R G R+ + +MCIG G G A ER
Sbjct: 356 GHPLGMSGARLVLTALHQLERTGG--RYALCTMCIGVGQGIALAIER 400
>gnl|CDD|131483 TIGR02430, pcaF, 3-oxoadipyl-CoA thiolase. Members of this family
are designated beta-ketoadipyl CoA thiolase, an enzyme
that acts at the end of pathways for the degradation of
protocatechuate (from benzoate and related compounds)
and of phenylacetic acid.
Length = 400
Score = 275 bits (706), Expect = 2e-90
Identities = 145/343 (42%), Positives = 195/343 (56%), Gaps = 34/343 (9%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNP----- 55
MAA AG P +VP TVNR C SGL A+ A AIKAG D+ I G+ESM+ P
Sbjct: 69 MAALLAGLPVSVPGTTVNRLCGSGLDAIGMAARAIKAGEADLLIAGGVESMSRAPFVMGK 128
Query: 56 ---------------MAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQA 100
+ W +NP +KA + M T+ENVA FG++R++QD
Sbjct: 129 ADSAFSRSAKIEDTTIGWR-FINPLMKA----LYGVDSMPETAENVAEEFGISREDQDAF 183
Query: 101 AVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLK 160
A+ S ++ AAA A+G F +EI+PV + K G+ P + D+ RP T++ LAKLK
Sbjct: 184 ALRSQQRTAAAQASGFFAEEIVPVV---IPQKKGE--PTVVDQDEHPRPETTLEGLAKLK 238
Query: 161 PVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGP 220
PV + DGT TAGN+S V+DGA A+LL R GL A GV+P IMG+GP
Sbjct: 239 PVVRPDGTVTAGNASGVNDGAAALLLASEEAVQRHGLTPRARILAAATAGVEPRIMGIGP 298
Query: 221 AVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGL--DPEKINVNGGALAIGHPL 278
A + AGL +D D+ E+NEAFA+Q + +LGL D ++N NGGA+A+GHPL
Sbjct: 299 VPATQKLLARAGLSIDQFDVIELNEAFAAQALAVLRELGLADDDARVNPNGGAIALGHPL 358
Query: 279 GTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 321
G +GAR V T L +++R G R+ + +MCIG G G A ER
Sbjct: 359 GASGARLVLTALRQLERSGG--RYALCTMCIGVGQGIALAIER 399
>gnl|CDD|223261 COG0183, PaaJ, Acetyl-CoA acetyltransferase [Lipid metabolism].
Length = 392
Score = 271 bits (695), Expect = 8e-89
Identities = 137/334 (41%), Positives = 184/334 (55%), Gaps = 27/334 (8%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 60
AA AG P +VP TVNR C+SGL AV A AI +G D+ + G+E M+ PM EG
Sbjct: 72 QAALAAGLPGSVPAVTVNRACASGLAAVRLAAQAIASGEADVVLAGGVEKMSDAPMGREG 131
Query: 61 S------VNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAA 114
V+P + MG+T+E A R+G++R++QD+ AV SH+ AAA A
Sbjct: 132 VRVLDSAVDPMFEDPLGDATPGYLMGLTAERYAKRYGISREDQDEVAVKSHKNAAANPKA 191
Query: 115 GKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTS-VSE-LAKLKPVFKK-DGTTTA 171
G F DEI P D + D R + S S+ A L P F++ GT TA
Sbjct: 192 GFF-DEITPE----------DVLNSPVVADPLRRLDCSPTSDGAAALVPAFEEVGGTVTA 240
Query: 172 GNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSA 231
GN+S ++DGA A+LLM S A GL L R +A GVDP+IM GP A+ A+ A
Sbjct: 241 GNASGINDGAAALLLMSESKAKELGLAPLAAIRAYAMAGVDPSIM-DGPVAAVHDALTIA 299
Query: 232 GLQ-LDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLL 290
GL L+D+ L E EAFA+ + LG P +N +GGA+A+GHP+G TGAR + L
Sbjct: 300 GLLALEDLGLAEKGEAFAAVALGVTKILGDLP--VNPSGGAIALGHPIGATGARILVELA 357
Query: 291 HEMKRRG--RDCRFGVISMCIG-TGMGAAAVFER 321
+++ RG R G+ ++CIG G G AAV ER
Sbjct: 358 RQLRGRGQVVAKRRGLATLCIGGGGQGVAAVLER 391
>gnl|CDD|168156 PRK05656, PRK05656, acetyl-CoA acetyltransferase; Provisional.
Length = 393
Score = 270 bits (693), Expect = 2e-88
Identities = 140/332 (42%), Positives = 198/332 (59%), Gaps = 18/332 (5%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGS 61
AA AG P +VP T+N+ C SGL+A+ A AI+ G ++ I G E+M++ P G+
Sbjct: 69 AAIKAGLPHSVPAMTLNKVCGSGLKALHLAAQAIRCGDAEVIIAGGQENMSLAPYVLPGA 128
Query: 62 VNPKVKAFEQAQNCLLP-----------MGVTSENVAHRFGVTRKEQDQAAVDSHRKAAA 110
Q + ++ MG+T+EN+ ++G++R+ QD A S +KA A
Sbjct: 129 RTGLRMGHAQLVDSMITDGLWDAFNDYHMGITAENLVEKYGISREAQDAFAAASQQKAVA 188
Query: 111 ATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTT 170
A AG+F DEI P+ ++ + G+ P+ + D+ R T+ LAKLKP FKKDG+ T
Sbjct: 189 AIEAGRFDDEITPI---LIPQRKGE--PLAFATDEQPRAGTTAESLAKLKPAFKKDGSVT 243
Query: 171 AGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKS 230
AGN+S ++DGA AVLLM + A GLP+L +A GVDPAIMG+GP A +
Sbjct: 244 AGNASSLNDGAAAVLLMSAAKAKALGLPVLAKIAAYANAGVDPAIMGIGPVSATRRCLDK 303
Query: 231 AGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLL 290
AG L ++DL E NEAFA+Q + +LG D K+NVNGGA+A+GHP+G +G R + TLL
Sbjct: 304 AGWSLAELDLIEANEAFAAQSLAVGKELGWDAAKVNVNGGAIALGHPIGASGCRVLVTLL 363
Query: 291 HEMKRRGRDCRFGVISMCIGTGMGAAAVFERG 322
HEM R RD + G+ ++CIG G G A ER
Sbjct: 364 HEMIR--RDAKKGLATLCIGGGQGVALAIERD 393
>gnl|CDD|236197 PRK08242, PRK08242, acetyl-CoA acetyltransferase; Validated.
Length = 402
Score = 260 bits (666), Expect = 3e-84
Identities = 135/347 (38%), Positives = 192/347 (55%), Gaps = 44/347 (12%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPM----- 56
A AG PETVP +NR C+SGL+AV AA +++G+ D+ I G+ESM+ PM
Sbjct: 72 AVLAAGLPETVPGVQINRFCASGLEAVNLAAAKVRSGWDDLVIAGGVESMSRVPMGSDGG 131
Query: 57 AWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGK 116
AW +++P +P G++++ +A ++G +R++ D AV+S ++AAAA A G
Sbjct: 132 AW--AMDPST----NFPTYFVPQGISADLIATKYGFSREDVDAYAVESQQRAAAAWAEGY 185
Query: 117 FKDEIIPVATKIVDPKTGDEKPVTI-SVDDGIRPNTSVSELAKLKPVFKKDGTT------ 169
F ++PV D+ +TI D+ +RP T++ LAKLKP F G
Sbjct: 186 FAKSVVPVK---------DQNGLTILDHDEHMRPGTTMESLAKLKPSFAMMGEMGGFDAV 236
Query: 170 ---------------TAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPA 214
AGNSS + DGA AVL+ GL A +G DP
Sbjct: 237 ALQKYPEVERINHVHHAGNSSGIVDGAAAVLIGSEEAGKALGLKPRARIVATATIGSDPT 296
Query: 215 IMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAI 274
IM GP A A+ AGL +DDIDLFE+NEAFAS + L + +K+NVNGGA+A+
Sbjct: 297 IMLTGPVPATRKALAKAGLTVDDIDLFELNEAFASVVLRFMQALDIPHDKVNVNGGAIAM 356
Query: 275 GHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 321
GHPLG TGA + T+L E++RRG+ R +I++C+G GMG A + ER
Sbjct: 357 GHPLGATGAMILGTVLDELERRGK--RTALITLCVGGGMGIATIIER 401
>gnl|CDD|131498 TIGR02445, fadA, fatty oxidation complex, beta subunit FadA. This
subunit of the FadBA complex has acetyl-CoA
C-acyltransferase (EC 2.3.1.16) activity, and is also
known as beta-ketothiolase and fatty oxidation complex,
beta subunit. This protein is almost always located
adjacent to FadB (TIGR02437). The FadBA complex is the
major complex active for beta-oxidation of fatty acids
in E. coli [Fatty acid and phospholipid metabolism,
Degradation].
Length = 385
Score = 257 bits (657), Expect = 3e-83
Identities = 145/325 (44%), Positives = 188/325 (57%), Gaps = 13/325 (4%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 60
AA A P T TVNR C S +QA+ D A AI G D+ + G+E M PM
Sbjct: 69 NAALLAQIPHTSAAVTVNRLCGSSMQALHDAARAIMTGDADVCLVGGVEHMGHVPMMHGV 128
Query: 61 SVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDE 120
+P + + MG+T+E + G++R++QD A SH +A AAT GKFK+E
Sbjct: 129 DFHPGMSLHVAKAAGM--MGLTAEMLGKMHGISREQQDAFAARSHARAHAATQEGKFKNE 186
Query: 121 IIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK-KDGTTTAGNSSQVSD 179
IIP D G K D+ IRP T+V LA L+P F K+GT TAG SS +SD
Sbjct: 187 IIPTQGHDAD---GFLK--QFDYDEVIRPETTVESLAALRPAFDPKNGTVTAGTSSALSD 241
Query: 180 GAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDID 239
GA A+L+M A GL R+ A G DP+IMG GP A A+K AGL + DID
Sbjct: 242 GASAMLVMSEQRANELGLKPRARIRSMAVAGCDPSIMGYGPVPATQKALKRAGLSISDID 301
Query: 240 LFEINEAFASQFVYCRNKLGL---DPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRR 296
+FE+NEAFA+Q + C LGL EK+N+NGGA+A+GHPLG +GAR TLL+ M++
Sbjct: 302 VFELNEAFAAQALPCLKDLGLLDKMDEKVNLNGGAIALGHPLGCSGARISTTLLNLMEQ- 360
Query: 297 GRDCRFGVISMCIGTGMGAAAVFER 321
+D FG+ +MCIG G G A VFER
Sbjct: 361 -KDATFGLATMCIGLGQGIATVFER 384
>gnl|CDD|181311 PRK08235, PRK08235, acetyl-CoA acetyltransferase; Provisional.
Length = 393
Score = 256 bits (657), Expect = 4e-83
Identities = 131/335 (39%), Positives = 190/335 (56%), Gaps = 28/335 (8%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGS 61
AA AG P V TVN+ C+SGL+AV I+AG + + G+ESM+ P G+
Sbjct: 69 AARAAGIPWEVQTETVNKVCASGLRAVTLADQIIRAGDASVIVAGGMESMSNAPYILPGA 128
Query: 62 V------NPKVK----------AFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSH 105
+ +V AF MGV VA G++R+ QD+ A SH
Sbjct: 129 RWGYRMGDNEVIDLMVADGLTCAFSGVH-----MGVYGGEVAKELGISREAQDEWAYRSH 183
Query: 106 RKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK 165
++A +A G+F++EI+PV + + GD P+ ++ D+ R +T++ +LAKLKPVF K
Sbjct: 184 QRAVSAHEEGRFEEEIVPVT---IPQRKGD--PIVVAKDEAPRKDTTIEKLAKLKPVFDK 238
Query: 166 DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIP 225
GT TAGN+ V+DGA A++LM A ++G L A+ V+ P AI
Sbjct: 239 TGTITAGNAPGVNDGAAALVLMSEDRAKQEGRKPLATILAHTAIAVEAKDFPRTPGYAIN 298
Query: 226 AAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARC 285
A ++ G ++DIDLFEINEAFA+ + G+DPEK+NVNGGA+A+GHP+G +GAR
Sbjct: 299 ALLEKTGKTVEDIDLFEINEAFAAVALASTEIAGIDPEKVNVNGGAVALGHPIGASGARI 358
Query: 286 VATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 320
+ TL+HE+KRRG G+ ++C G G G A + E
Sbjct: 359 IVTLIHELKRRGGG--IGIAAICSGGGQGDAVLIE 391
>gnl|CDD|183998 PRK13359, PRK13359, beta-ketoadipyl CoA thiolase; Provisional.
Length = 400
Score = 254 bits (650), Expect = 5e-82
Identities = 141/343 (41%), Positives = 189/343 (55%), Gaps = 35/343 (10%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNP----- 55
M+ AG P VP T+NR C SG+ AV A AIK+G + I G+ESM+ P
Sbjct: 70 MSLLLAGLPHGVPGSTINRLCGSGMDAVGVAARAIKSGEAALMIAGGVESMSRAPFVMGK 129
Query: 56 ---------------MAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQA 100
+ W VNP +K + M T+ENVA + V+R +QD
Sbjct: 130 AESAFSRQAEIFDTTIGWR-FVNPLMKQ----LYGVDSMPETAENVATDYNVSRADQDAF 184
Query: 101 AVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLK 160
A+ S +KAA A A G EI+PV + K GD P+ +S D+ R T++ LAKLK
Sbjct: 185 ALRSQQKAARAQADGTLAQEIVPVT---IPQKKGD--PLVVSRDEHPRE-TTLEALAKLK 238
Query: 161 PVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGP 220
V + DGT TAGN+S V+DGA A+LL + A R GL A GV+P +MG+GP
Sbjct: 239 GVVRPDGTVTAGNASGVNDGACALLLASEAAARRHGLKPRARVLGIATAGVEPRVMGIGP 298
Query: 221 AVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGL--DPEKINVNGGALAIGHPL 278
A A + G+ LD D+ E+NEAFASQ + +LGL D ++N NGGA+A+GHPL
Sbjct: 299 APATQKLLARLGMTLDQFDVIELNEAFASQGLAVLRELGLADDDARVNPNGGAIALGHPL 358
Query: 279 GTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 321
G +GAR V T L++++R G RF + +MCIG G G A ER
Sbjct: 359 GASGARLVTTALYQLERTGG--RFALCTMCIGVGQGIAIAIER 399
>gnl|CDD|181146 PRK07851, PRK07851, acetyl-CoA acetyltransferase; Provisional.
Length = 406
Score = 253 bits (647), Expect = 2e-81
Identities = 136/340 (40%), Positives = 188/340 (55%), Gaps = 42/340 (12%)
Query: 10 ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPM----AWEGSVNPK 65
+ +P TVNR CSS LQ AIKAG D+ I AG+E+++ + + NP
Sbjct: 79 DFLPGTTVNRYCSSSLQTTRMAFHAIKAGEGDVFISAGVETVSRFAKGNSDSLPDTKNP- 137
Query: 66 VKAFEQAQ-------------------NCLLP-----MGVTSENVAHRFGVTRKEQDQAA 101
F +AQ + LLP MG T+ENVA G++R+EQD+
Sbjct: 138 --LFAEAQARTAARAEGGAEAWHDPREDGLLPDVYIAMGQTAENVAQLTGISREEQDEWG 195
Query: 102 VDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKP 161
V S +A A A G F+ EI PV +S DDG R T+ ++++LKP
Sbjct: 196 VRSQNRAEEAIANGFFEREITPVTLP---------DGTVVSTDDGPRAGTTYEKVSQLKP 246
Query: 162 VFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPA 221
VF+ DGT TAGN+ ++DGA AV++M + A GL L + G+ P IMG+GP
Sbjct: 247 VFRPDGTVTAGNACPLNDGAAAVVIMSDTKARELGLTPLARIVSTGVSGLSPEIMGLGPV 306
Query: 222 VAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTT 281
A A+ AG+ +DDIDL EINEAFA+Q + +LG+D +K+NV+GGA+A+GHP G T
Sbjct: 307 EASKQALARAGMSIDDIDLVEINEAFAAQVLPSARELGIDEDKLNVSGGAIALGHPFGMT 366
Query: 282 GARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 321
GAR TLL+ + + D FG+ +MC+G G G A V ER
Sbjct: 367 GARITTTLLNNL--QTHDKTFGLETMCVGGGQGMAMVLER 404
>gnl|CDD|181242 PRK08131, PRK08131, acetyl-CoA acetyltransferase; Provisional.
Length = 401
Score = 251 bits (643), Expect = 6e-81
Identities = 144/339 (42%), Positives = 196/339 (57%), Gaps = 28/339 (8%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPM----- 56
A AG P TVP +TVNR C+SGL AV D A AI G D+ + G+ESM+ P
Sbjct: 70 ALLLAGLPVTVPGQTVNRLCASGLAAVIDAARAITCGEGDLYLAGGVESMSRAPFVMGKA 129
Query: 57 --AWE----------GSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDS 104
A+ G+ P K Q N +P T +NVA FG++R++ D+ A S
Sbjct: 130 ESAFSRDAKVFDTTIGARFPNPKIVAQYGNDSMPE--TGDNVAAEFGISREDADRFAAQS 187
Query: 105 HRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 164
K AA G F DEI P+ P+ P ++ D+ RP+++V L KLKP+F+
Sbjct: 188 QAKYQAAKEEGFFADEITPIEV----PQGRKLPPKLVAEDEHPRPSSTVEALTKLKPLFE 243
Query: 165 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAI 224
G TAGN+S ++DGA A+L+ R+ + GL + + AA GV+P IMG+GP AI
Sbjct: 244 -GGVVTAGNASGINDGAAALLIGSRAAGEKYGLKPMARILSSAAAGVEPRIMGIGPVEAI 302
Query: 225 PAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGL--DPEKINVNGGALAIGHPLGTTG 282
A+ AGL LDD+D+ EINEAFASQ + C LG+ D ++N NGGA+A+GHPLG +G
Sbjct: 303 KKALARAGLTLDDMDIIEINEAFASQVLGCLKGLGVDFDDPRVNPNGGAIAVGHPLGASG 362
Query: 283 ARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 321
AR T E++RRG+ R+ V+S+CIG G G A V ER
Sbjct: 363 ARLALTAARELQRRGK--RYAVVSLCIGVGQGLAMVIER 399
>gnl|CDD|181265 PRK08170, PRK08170, acetyl-CoA acetyltransferase; Provisional.
Length = 426
Score = 247 bits (632), Expect = 7e-79
Identities = 142/370 (38%), Positives = 203/370 (54%), Gaps = 60/370 (16%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 60
+ A G E VP TV R C+SG+QA+ AA I G D+ + G+E+M+ P+ +
Sbjct: 69 VVALRLGCGEKVPAWTVQRNCASGMQALDSAAANIALGRADLVLAGGVEAMSHAPLLFSE 128
Query: 61 -------------SVNPKVKAFEQAQN-----------------CLLPMGVTSENVAHRF 90
S+ K+ A + + L MG T+E +AHRF
Sbjct: 129 KMVRWLAGWYAAKSIGQKLAALGKLRPSYLAPVIGLLRGLTDPVVGLNMGQTAEVLAHRF 188
Query: 91 GVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPN 150
G+TR++ D A SH++ AAA A G+ K E++P+ + D K D DDG+RP+
Sbjct: 189 GITREQMDAYAARSHQRLAAAQAEGRLK-EVVPLFDR--DGKFYDH-------DDGVRPD 238
Query: 151 TSVSELAKLKPVF-KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAV 209
+S+ +LAKLKP F + G TAGNSSQ++DGA +LL + GLP LG
Sbjct: 239 SSMEKLAKLKPFFDRPYGRVTAGNSSQITDGACWLLLASEEAVKKYGLPPLGRIVDSQWA 298
Query: 210 GVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFV----------YCRNKLG 259
+DP+ MG+GP A ++ GL L+D+DL+EINEAFA+Q + YCR +LG
Sbjct: 299 ALDPSQMGLGPVHAATPLLQRHGLTLEDLDLWEINEAFAAQVLACLAAWADEEYCREQLG 358
Query: 260 L-------DPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTG 312
L D E++NV+GGA+A+GHP+G +GAR V LLH +KRRG + G+ ++CIG G
Sbjct: 359 LDGALGELDRERLNVDGGAIALGHPVGASGARIVLHLLHALKRRG--TKRGIAAICIGGG 416
Query: 313 MGAAAVFERG 322
G A + ER
Sbjct: 417 QGGAMLLERV 426
>gnl|CDD|168632 PRK06633, PRK06633, acetyl-CoA acetyltransferase; Provisional.
Length = 392
Score = 237 bits (605), Expect = 2e-75
Identities = 124/335 (37%), Positives = 196/335 (58%), Gaps = 36/335 (10%)
Query: 5 YAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT------------ 52
+AG P+ VP T+N+ C SGL++VA A +I G +I I G E+M+
Sbjct: 73 HAGIPKEVPGYTINKVCGSGLKSVALAANSIMTGDNEIVIAGGQENMSLGMHGSYIRAGA 132
Query: 53 -------VNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSH 105
V+ M ++G + F MG+T+EN++ +F ++R+EQD+ A+ SH
Sbjct: 133 KFGDIKMVDLMQYDGLTDVFSGVF---------MGITAENISKQFNISRQEQDEFALSSH 183
Query: 106 RKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK 165
+KAA A AG FKDEI+P+ I + D+ +RP+TS+ L+KL+P F K
Sbjct: 184 KKAAKAQLAGIFKDEILPIEVTI------KKTTSLFDHDETVRPDTSLEILSKLRPAFDK 237
Query: 166 DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIP 225
+G TAGN+S ++DGA ++++ + L L ++A+ GVDP+IMG P A
Sbjct: 238 NGVVTAGNASSINDGAACLMVVSEEALKKHNLTPLARIVSYASAGVDPSIMGTAPVPASQ 297
Query: 226 AAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARC 285
A+ AG ++D+++ E+NEAFA+Q +Y ++ D EK+N+NGGA+AIGHP+G +G R
Sbjct: 298 KALSKAGWSVNDLEVIEVNEAFAAQSIYVNREMKWDMEKVNINGGAIAIGHPIGASGGRV 357
Query: 286 VATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 320
+ TL+H ++R + G++++CIG GMG A E
Sbjct: 358 LITLIHGLRR--AKAKKGLVTLCIGGGMGMAMCVE 390
>gnl|CDD|215347 PLN02644, PLN02644, acetyl-CoA C-acetyltransferase.
Length = 394
Score = 234 bits (600), Expect = 2e-74
Identities = 120/332 (36%), Positives = 185/332 (55%), Gaps = 19/332 (5%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGS 61
AA AG P + TVN+ C+SG++AV A +I+ G D+ + G+ESM+ P +
Sbjct: 68 AALGAGLPPSTICTTVNKVCASGMKAVMLAAQSIQLGINDVVVAGGMESMSNAPKYLPEA 127
Query: 62 VNPKVKAFEQAQNCLL-----------PMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAA 110
+ + +L MGV +E A ++ ++R+EQD A+ S+ +A A
Sbjct: 128 RKGSRLGHDTVVDGMLKDGLWDVYNDFGMGVCAELCADQYSISREEQDAYAIQSYERAIA 187
Query: 111 ATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKD-GTT 169
A AG F EI+PV P V + D+G+ +L KL+P FK+D G+
Sbjct: 188 AQEAGAFAWEIVPVEV----PGGRGRPSVIVDKDEGLGKFDPA-KLRKLRPSFKEDGGSV 242
Query: 170 TAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVK 229
TAGN+S +SDGA A++L+ A+ GL ++ R +A P + PA+AIP A+K
Sbjct: 243 TAGNASSISDGAAALVLVSGEKALELGLQVIAKIRGYADAAQAPELFTTAPALAIPKALK 302
Query: 230 SAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATL 289
AGL+ +D +EINEAF+ + + LGLDPEK+NV+GGA+++GHP+G +GAR + TL
Sbjct: 303 HAGLEASQVDYYEINEAFSVVALANQKLLGLDPEKVNVHGGAVSLGHPIGCSGARILVTL 362
Query: 290 LHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 321
L ++ + ++GV +C G G +A V E
Sbjct: 363 LGVLRSKNG--KYGVAGICNGGGGASAIVVEL 392
>gnl|CDD|181597 PRK08963, fadI, 3-ketoacyl-CoA thiolase; Reviewed.
Length = 428
Score = 234 bits (600), Expect = 4e-74
Identities = 133/362 (36%), Positives = 189/362 (52%), Gaps = 56/362 (15%)
Query: 6 AGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNP---------- 55
G +V+R C++ QAVA+VA +I AG DIGI G +S +V P
Sbjct: 76 TGMNVHTDAYSVSRACATSFQAVANVAESIMAGTIDIGIAGGADSSSVLPIGVSKKLARA 135
Query: 56 ---MAWEGSVNPKVKAFEQAQ-NCLLP-------------MGVTSENVAHRFGVTRKEQD 98
+ ++ ++K F + + LLP MG T+E +A +G++R+EQD
Sbjct: 136 LVDLNKARTLGQRLKLFSRLRLRDLLPVPPAVAEYSTGLRMGDTAEQMAKTYGISREEQD 195
Query: 99 QAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAK 158
A SH+ AA A A GK DE V T V P + D+ IR ++++ + AK
Sbjct: 196 ALAHRSHQLAAQAWAEGKLDDE---VMTAHVPPYKQ-----PLEEDNNIRGDSTLEDYAK 247
Query: 159 LKPVF-KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDP-AIM 216
L+P F +K GT TA NS+ ++DGA AVLLM S A GL LG R++A +D M
Sbjct: 248 LRPAFDRKHGTVTAANSTPLTDGAAAVLLMSESRAKALGLTPLGYLRSYAFAAIDVWQDM 307
Query: 217 GVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFV----------YCRNKLG------- 259
+GPA A P A++ AGL L D+ L +++EAFA+Q + + R KLG
Sbjct: 308 LLGPAYATPLALERAGLTLADLTLIDMHEAFAAQTLANLQMFASERFAREKLGRSQAIGE 367
Query: 260 LDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVF 319
+D K NV GG++A GHP TGAR + LHE++RRG G+ + C G+GAA V
Sbjct: 368 VDMSKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGG--LGLTTACAAGGLGAAMVL 425
Query: 320 ER 321
E
Sbjct: 426 EV 427
>gnl|CDD|181145 PRK07850, PRK07850, acetyl-CoA acetyltransferase; Provisional.
Length = 387
Score = 231 bits (591), Expect = 3e-73
Identities = 128/329 (38%), Positives = 181/329 (55%), Gaps = 21/329 (6%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPM---AW 58
A +AG P V T++ QC S QA VA I AG D+GI G+E+M+ P+ A
Sbjct: 70 AWLHAGLPYHVGATTIDCQCGSAQQANHLVAGLIAAGAIDVGIACGVEAMSRVPLGANAG 129
Query: 59 EGSVNPKVKAFEQAQNCLLPMG---VTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAG 115
G P+ +++ + M +E +A R G+TR++ D + S R+AA A A G
Sbjct: 130 PGRGLPRPDSWD------IDMPNQFEAAERIAKRRGITREDVDAFGLRSQRRAAQAWAEG 183
Query: 116 KFKDEIIPVATKIVDPK---TGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAG 172
+F EI PV ++D + TG+ + VT D G+R +T++ LA LKPV + G TAG
Sbjct: 184 RFDREISPVQAPVLDEEGQPTGETRLVT--RDQGLR-DTTMEGLAGLKPVLE-GGIHTAG 239
Query: 173 NSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAG 232
SSQ+SDGA AVL M A GL A VG +P GP A ++ AG
Sbjct: 240 TSSQISDGAAAVLWMDEDRARALGLRPRARIVAQALVGAEPYYHLDGPVQATAKVLEKAG 299
Query: 233 LQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHE 292
+++ DIDL EINEAFAS + D +K+NVNGGA+A+GHP+G+TGAR + T LHE
Sbjct: 300 MKIGDIDLVEINEAFASVVLSWAQVHEPDMDKVNVNGGAIALGHPVGSTGARLITTALHE 359
Query: 293 MKRRGRDCRFGVISMCIGTGMGAAAVFER 321
++R + +I+MC G + + ER
Sbjct: 360 LERTDK--STALITMCAGGALSTGTIIER 386
>gnl|CDD|180595 PRK06504, PRK06504, acetyl-CoA acetyltransferase; Provisional.
Length = 390
Score = 226 bits (579), Expect = 2e-71
Identities = 126/334 (37%), Positives = 188/334 (56%), Gaps = 26/334 (7%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPM---- 56
A + PE+VP +++RQC S QA+ A A+ +G DI I AG+ESMT PM
Sbjct: 69 NAVLASKLPESVPGTSIDRQCGSSQQALHFAAQAVMSGTMDIVIAAGVESMTRVPMGSPS 128
Query: 57 ---AWEGSVNPKVKAFEQA-QNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAAT 112
A G + K E+ +E +A ++G+++ + D+ A+ SH++A AAT
Sbjct: 129 TLPAKNGLGHYKSPGMEERYPGIQFSQFTGAEMMAKKYGLSKDQLDEFALQSHQRAIAAT 188
Query: 113 AAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAG 172
AGKFK EI+P+ + D +VD+GIR + ++ +A +K + + G TA
Sbjct: 189 QAGKFKAEIVPL-----EITRADGSGEMHTVDEGIRFDATLEGIAGVKLI-AEGGRLTAA 242
Query: 173 NSSQVSDGAGAVLLMKRSVAMRKGLPILGV-----FRTFAAVGVDPAIMGVGPAVAIPAA 227
+SQ+ DGA V+ V +GL LGV +G DP IM P A A
Sbjct: 243 TASQICDGASGVM-----VVNERGLKALGVKPLARIHHMTVIGGDPVIMLEAPLPATERA 297
Query: 228 VKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVA 287
+K AG+++DDIDL+E+NEAFAS + G DPE++NVNGGA+A+GHPLG +G + +
Sbjct: 298 LKKAGMKIDDIDLYEVNEAFASVPLAWLKATGADPERLNVNGGAIALGHPLGASGTKLMT 357
Query: 288 TLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 321
TL+H +K+RG+ R+G+ +MC G GM + ER
Sbjct: 358 TLVHALKQRGK--RYGLQTMCEGGGMANVTIVER 389
>gnl|CDD|181123 PRK07801, PRK07801, acetyl-CoA acetyltransferase; Provisional.
Length = 382
Score = 223 bits (570), Expect = 3e-70
Identities = 123/339 (36%), Positives = 177/339 (52%), Gaps = 54/339 (15%)
Query: 6 AGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGSVNPK 65
AG PE VP TV+RQC S QA+ A A+ +G D+ + G+++M+ P++
Sbjct: 74 AGLPEEVPGVTVDRQCGSSQQAIHFAAQAVMSGTQDLVVAGGVQNMSQIPIS-------- 125
Query: 66 VKAFEQAQNCLLPMGVT-----SENVAHRFG------------------VTRKEQDQAAV 102
A +G T S+ HR+G ++R+E ++ A+
Sbjct: 126 -----SAMTAGEQLGFTSPFAESKGWLHRYGDQEVSQFRGAELIAEKWGISREEMERFAL 180
Query: 103 DSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPV 162
+SHR+A AA AG+F +EI+PV ++VD+G R TS+ ++A LKP+
Sbjct: 181 ESHRRAFAAIRAGRFDNEIVPVG--------------GVTVDEGPR-ETSLEKMAGLKPL 225
Query: 163 FKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAV 222
+ G TA +SQ+SDGA AVLL R GL + G DP M P
Sbjct: 226 V-EGGRLTAAVASQISDGASAVLLASERAVKRHGLTPRARIHHLSVRGDDPVFMLTAPIP 284
Query: 223 AIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 282
A A++ GL +DDID+ EINEAFA + + G DP K+N NGGA+A+GHPLG TG
Sbjct: 285 ATRYALEKTGLSIDDIDVVEINEAFAPVVLAWLKETGADPAKVNPNGGAIALGHPLGATG 344
Query: 283 ARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 321
A+ + TLLHE++R G R+G+ +MC G G + ER
Sbjct: 345 AKLMTTLLHELERTGG--RYGLQTMCEGGGTANVTIIER 381
>gnl|CDD|215722 pfam00108, Thiolase_N, Thiolase, N-terminal domain. Thiolase is
reported to be structurally related to beta-ketoacyl
synthase (pfam00109), and also chalcone synthase.
Length = 262
Score = 216 bits (552), Expect = 5e-69
Identities = 94/202 (46%), Positives = 126/202 (62%), Gaps = 17/202 (8%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 60
AA AG P++VP T+N+ C SGL+AVA A AI+AG DI + G+ESM+ P
Sbjct: 66 QAALKAGIPDSVPAVTINKVCGSGLKAVALAAQAIRAGDADIVVAGGVESMSNAPYVLPA 125
Query: 61 S-----------VNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAA 109
S V+ +K L+ MG+T+ENVA ++G++R+EQD+ A+ S +KAA
Sbjct: 126 SRVGARMGDAKLVDTMLKDGLTDAFNLIHMGITAENVAKKYGISREEQDEFALRSQQKAA 185
Query: 110 AATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKD-GT 168
AA AGKFKDEI+PV K KP+ + D+GIRP T++ LAKLKP F K+ GT
Sbjct: 186 AAQKAGKFKDEIVPVTI-----KGRKGKPLVVDKDEGIRPGTTLESLAKLKPAFDKENGT 240
Query: 169 TTAGNSSQVSDGAGAVLLMKRS 190
TAGN+S ++DGA AVLLM S
Sbjct: 241 VTAGNASGLNDGAAAVLLMSES 262
>gnl|CDD|180659 PRK06690, PRK06690, acetyl-CoA acetyltransferase; Provisional.
Length = 361
Score = 214 bits (547), Expect = 4e-67
Identities = 114/322 (35%), Positives = 174/322 (54%), Gaps = 27/322 (8%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 60
++A AG +P T++RQC +GL+A+ I+ G I G+ES + +P
Sbjct: 62 LSALEAGLGLHIPGVTIDRQCGAGLEAIRTACHFIQGGAGKCYIAGGVESTSTSPFQNRA 121
Query: 61 SVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDE 120
+P+ MGV +E VA R+ +TR+ QD+ A S+++ A G +E
Sbjct: 122 RFSPETIGDPD-------MGVAAEYVAERYNITREMQDEYACLSYKRTLQALEKGYIHEE 174
Query: 121 IIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSEL-AKLKPVFKKDGTTTAGNSSQVSD 179
I+ + D+ I+ + + + KP F +GT TAGNS V+D
Sbjct: 175 ILSFNGLL---------------DESIKKEMNYERIIKRTKPAFLHNGTVTAGNSCGVND 219
Query: 180 GAGAVLLMKRSVAMRKGL-PILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDI 238
GA AVL+M+ A + G P+L R+ A VGVDP + G GP A+ + ++++DI
Sbjct: 220 GACAVLVMEEGQARKLGYKPVLRFVRS-AVVGVDPNLPGTGPIFAVNKLLNEMNMKVEDI 278
Query: 239 DLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGR 298
D FEINEAFAS+ V C +L + EK+NVNGGA+A+GHP G +GA V L ++ KR
Sbjct: 279 DYFEINEAFASKVVACAKELQIPYEKLNVNGGAIALGHPYGASGAMLVTRLFYQAKR--E 336
Query: 299 DCRFGVISMCIGTGMGAAAVFE 320
D ++G+ ++ IG G+G A +FE
Sbjct: 337 DMKYGIATLGIGGGIGLALLFE 358
>gnl|CDD|236440 PRK09268, PRK09268, acetyl-CoA acetyltransferase; Provisional.
Length = 427
Score = 215 bits (550), Expect = 1e-66
Identities = 133/368 (36%), Positives = 175/368 (47%), Gaps = 77/368 (20%)
Query: 9 PETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWE--------- 59
P T P + + C +GL+A VA I G D GI G+++ + P+A
Sbjct: 82 PYT-PAYDLQQACGTGLEAAILVANKIALGQIDSGIAGGVDTTSDAPIAVNEGLRKILLE 140
Query: 60 --------------GSVNPKVKAFEQAQN----CLLPMGVTSENVAHRFGVTRKEQDQAA 101
G + PK A E +N L MG + A +G++R+ QD+ A
Sbjct: 141 LNRAKTTGDRLKALGKLRPKHLAPEIPRNGEPRTGLSMGEHAAITAKEWGISREAQDELA 200
Query: 102 VDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKP 161
SH+ AAA G F D I P G + D+ +RP++S+ +LAKLKP
Sbjct: 201 AASHQNLAAAYDRGFFDDLITPFL--------GLTR------DNNLRPDSSLEKLAKLKP 246
Query: 162 VFKK--DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTF--AAV----GVDP 213
VF K T TAGNS+ ++DGA VLL A GLP+L AAV G +
Sbjct: 247 VFGKGGRATMTAGNSTPLTDGASVVLLASEEWAAEHGLPVLAYLVDAETAAVDFVHGKEG 306
Query: 214 AIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFV----------YCRNKLGL--- 260
+M PA A+P + GL L D D +EI+EAFASQ + YCR +LGL
Sbjct: 307 LLMA--PAYAVPRLLARNGLTLQDFDFYEIHEAFASQVLATLKAWEDEEYCRERLGLDAP 364
Query: 261 ----DPEKINVNGGALAIGHPLGTTGARCVATL---LHEMKRRGRDCRFGVISMCIGTGM 313
D K+NVNG +LA GHP TG R VATL L E K GR G+IS+C G
Sbjct: 365 LGSIDRSKLNVNGSSLAAGHPFAATGGRIVATLAKLLAE-KGSGR----GLISICAAGGQ 419
Query: 314 GAAAVFER 321
G A+ ER
Sbjct: 420 GVTAILER 427
>gnl|CDD|145779 pfam02803, Thiolase_C, Thiolase, C-terminal domain. Thiolase is
reported to be structurally related to beta-ketoacyl
synthase (pfam00109), and also chalcone synthase.
Length = 123
Score = 188 bits (480), Expect = 4e-60
Identities = 76/125 (60%), Positives = 97/125 (77%), Gaps = 2/125 (1%)
Query: 197 LPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRN 256
L L R++A VGVDPAIMG+GPA AIP A+K AGL ++DIDLFEINEAFA+Q +
Sbjct: 1 LKPLARIRSYATVGVDPAIMGIGPAYAIPKALKKAGLTVNDIDLFEINEAFAAQALAVAK 60
Query: 257 KLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAA 316
LG+DPEK+NVNGGA+A+GHPLG +GAR + TLLHE+KRRG ++G+ ++CIG G G A
Sbjct: 61 DLGIDPEKVNVNGGAIALGHPLGASGARILVTLLHELKRRGG--KYGLATLCIGGGQGVA 118
Query: 317 AVFER 321
+ ER
Sbjct: 119 MIIER 123
>gnl|CDD|180775 PRK06954, PRK06954, acetyl-CoA acetyltransferase; Provisional.
Length = 397
Score = 189 bits (481), Expect = 6e-57
Identities = 121/336 (36%), Positives = 165/336 (49%), Gaps = 31/336 (9%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGS 61
AA AG P +V TVN+ C SG++A + AG D+ + G+ESMT P
Sbjct: 74 AALGAGLPLSVGCTTVNKMCGSGMRAAMFAHDMLVAGSVDVIVAGGMESMTNAPY----- 128
Query: 62 VNPKVKA-----------------FEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDS 104
+ PK + E A + MG +E A +G TR+ QD A++S
Sbjct: 129 LLPKARGGMRMGHGQVLDHMFLDGLEDAYDKGRLMGTFAEECAGEYGFTREAQDAFAIES 188
Query: 105 HRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 164
+A A G F EI PV V K GD I D+ + ++ LKP F
Sbjct: 189 LARAKRANEDGSFAWEIAPVT---VAGKKGD---TVIDRDEQPF-KANPEKIPTLKPAFS 241
Query: 165 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAI 224
K GT TA NSS +SDGA A+++M+ S A R GL L + P+ P AI
Sbjct: 242 KTGTVTAANSSSISDGAAALVMMRASTAKRLGLAPLARVVGHSTFAQAPSKFTTAPVGAI 301
Query: 225 PAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 284
+ G + ++DLFEINEAFA + + GL EK+NVNGGA A+GHP+G +GAR
Sbjct: 302 RKLFEKNGWRAAEVDLFEINEAFAVVTMAAMKEHGLPHEKVNVNGGACALGHPIGASGAR 361
Query: 285 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 320
+ TL+ ++ RG + GV S+CIG G A E
Sbjct: 362 ILVTLIGALRARG--GKRGVASLCIGGGEATAMGIE 395
>gnl|CDD|235675 PRK06025, PRK06025, acetyl-CoA acetyltransferase; Provisional.
Length = 417
Score = 185 bits (472), Expect = 3e-55
Identities = 121/358 (33%), Positives = 170/358 (47%), Gaps = 50/358 (13%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESM-----TVNP 55
MAA AG+ T++R C G+ +V AA I +G D+ I G E M
Sbjct: 72 MAALDAGYDIKASGVTLDRFCGGGITSVNLAAAQIMSGMEDLVIAGGTEMMSYTAAMAAE 131
Query: 56 MAWEGSVNPKVKAFEQAQNCLLPM---GVTSENVAHRFGVTRKEQDQAAVDSHRKAAAAT 112
G + + L P GV + +A G+TR+ D ++S R+AA A
Sbjct: 132 DMAAGKPPLGMGSGNLRLRALHPQSHQGVCGDAIATMEGITREALDALGLESQRRAARAI 191
Query: 113 AAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK------- 165
G+F ++PV D+ V + ++ RP T+ LA LKP F
Sbjct: 192 KEGRFDKSLVPV--------YRDDGSVALDHEEFPRPQTTAEGLAALKPAFTAIADYPLD 243
Query: 166 DGTTT-------------------AGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTF 206
D TT AGNSS V DGA A+LL ++ A + GL
Sbjct: 244 DKGTTYRGLINQKYPDLEIKHVHHAGNSSGVVDGAAALLLASKAYAEKHGLKPRARIVAM 303
Query: 207 AAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAF---ASQFVYCRNKLGLDPE 263
A +G DP +M P A + AGL DDIDL+EINEAF A +F+ L LD +
Sbjct: 304 ANMGDDPTLMLNAPVPAAKKVLAKAGLTKDDIDLWEINEAFAVVAEKFI---RDLDLDRD 360
Query: 264 KINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 321
K+NVNGGA+A+GHP+G TG+ + T+L E++RRG + G+++MC GM A + ER
Sbjct: 361 KVNVNGGAIALGHPIGATGSILIGTVLDELERRGL--KRGLVTMCAAGGMAPAIIIER 416
>gnl|CDD|131499 TIGR02446, FadI, fatty oxidation complex, beta subunit FadI. This
subunit of the FadJI complex has acetyl-CoA
C-acyltransferase (EC 2.3.1.16) activity, and is also
known as beta-ketothiolase and fatty oxidation complex,
beta subunit, and YfcY. This protein is almost always
located adjacent to FadJ (TIGR02440). The FadJI complex
is needed for anaerobic beta-oxidation of short-chain
fatty acids in E. coli [Fatty acid and phospholipid
metabolism, Degradation].
Length = 430
Score = 185 bits (471), Expect = 5e-55
Identities = 118/351 (33%), Positives = 175/351 (49%), Gaps = 56/351 (15%)
Query: 16 TVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGSVN------PKVKAF 69
+V R C++ Q+ +VA +I AG DIGI G +S +V P+ + K +
Sbjct: 88 SVTRACATSFQSAVNVAESIMAGAIDIGIAGGADSSSVLPIGVSKKLAASLVDLNKARTL 147
Query: 70 EQAQNCL---------------------LPMGVTSENVAHRFGVTRKEQDQAAVDSHRKA 108
Q L MG T+E +A +G+TR EQD A SH A
Sbjct: 148 GQKLKVFSRLGLKDLMPVPPAVAEYSTGLSMGQTAEQMAKTYGITRAEQDALAHRSHTLA 207
Query: 109 AAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF-KKDG 167
+ A GK E V T P ++ I+ D+ IR N++++ AKL+P F +K G
Sbjct: 208 SQAWRDGKLAGE---VMTAFPPPY---KQW--IAEDNNIRHNSTLAGYAKLRPAFDRKHG 259
Query: 168 TTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDP-AIMGVGPAVAIPA 226
+ TA NS+ ++DGA AV+LM+ A G+ LG R++A +D M +GP+ A P
Sbjct: 260 SVTAANSTPLTDGAAAVILMREGRAKELGMEPLGYIRSYAFTAIDVWQDMLMGPSYATPL 319
Query: 227 AVKSAGLQLDDIDLFEINEAFASQFV----------YCRNKLG-------LDPEKINVNG 269
A++ AGL L D+ L +++EAFA+Q + + + LG +D K NV G
Sbjct: 320 ALQRAGLALSDLTLIDMHEAFAAQTLANVQMFASDKFAQENLGRSKAMGEIDMSKFNVLG 379
Query: 270 GALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 320
G++A GHP TGAR + L E+KRRG G+ + C G+GAA + E
Sbjct: 380 GSIAYGHPFAATGARMITQTLRELKRRGGG--LGLNTACAAGGLGAAMILE 428
>gnl|CDD|102340 PRK06366, PRK06366, acetyl-CoA acetyltransferase; Provisional.
Length = 388
Score = 181 bits (461), Expect = 4e-54
Identities = 110/334 (32%), Positives = 173/334 (51%), Gaps = 32/334 (9%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGS 61
AA++AG P V TVN C+SG+ AV A I G D+ I G+E+M+ P
Sbjct: 69 AAYHAGLPFGVTKYTVNVVCASGMLAVESAAREIMLGERDLVIAGGMENMSNAPFLLPSD 128
Query: 62 V--NPK---VKAFEQAQNCLLP----------MGVTSENVAHRFGVTRKEQDQAAVDSHR 106
+ PK K ++ L+ MGV++E A ++G+TR+ D+ +V S+
Sbjct: 129 LRWGPKHLLHKNYKIDDAMLVDGLIDAFYFEHMGVSAERTARKYGITREMADEYSVQSYE 188
Query: 107 KAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKD 166
+A AT +G+F++EI+P + D+GIR T++ +LAKL P F K+
Sbjct: 189 RAIRATESGEFRNEIVPFN--------------DLDRDEGIR-KTTMEDLAKLPPAFDKN 233
Query: 167 GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPA 226
G TAGNS+Q+SDG A+++ GL + + + +DP P A
Sbjct: 234 GILTAGNSAQLSDGGSALVMASEKAINEYGLKPIARITGYESASLDPLDFVEAPIPATRK 293
Query: 227 AVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCV 286
++ +D DL E NEAF+ + R++L +D E+ NVNGGA+AIGHP+G +G+R +
Sbjct: 294 LLEKQNKSIDYYDLVEHNEAFSIASIIVRDQLKIDNERFNVNGGAVAIGHPIGNSGSRII 353
Query: 287 ATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 320
TL++ +K R + G+ ++C G G E
Sbjct: 354 VTLINALKT--RHMKTGLATLCHGGGGAHTLTLE 385
>gnl|CDD|238422 cd00826, nondecarbox_cond_enzymes, nondecarboxylating condensing
enzymes; In general, thiolases catalyze the reversible
thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and
acetyl-CoA, a 2-step reaction involving a covalent
intermediate formed with a catalytic cysteine. There are
2 functional different classes: thiolase-I
(3-ketoacyl-CoA thiolase) and thiolase-II
(acetoacetyl-CoA thiolase). Thiolase-I can cleave longer
fatty acid molecules and plays an important role in the
beta-oxidative degradation of fatty acids. Thiolase-II
has a high substrate specificity. Although it can cleave
acetoacyl-CoA, its main function is the synthesis of
acetoacyl-CoA from two molecules of acetyl-CoA, which
gives it importance in several biosynthetic pathways.
Length = 393
Score = 157 bits (398), Expect = 7e-45
Identities = 107/353 (30%), Positives = 147/353 (41%), Gaps = 60/353 (16%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGS 61
AA +AG + P +N C SGL+A+A I G + + G E M
Sbjct: 66 AAMHAGGLQEAPAIGMNNLCGSGLRALALAMQLIAGGDANCILAGGFEKME-----TSAE 120
Query: 62 VNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEI 121
N K K + N R D A+ A AA G+FKDE
Sbjct: 121 NNAKEKHIDVLINKY---------------GMRACPDAFALAGQAGAEAAEKDGRFKDEF 165
Query: 122 IPVATKIVDPKTGDEKPVTISVDDGIR--PNTSVSELAKLKPVFKKDGTTTAGNSSQVSD 179
K G + + D+ I+ S+ E+AKL+P F K+ TAGN+ ++D
Sbjct: 166 AKFGVK------GRKGDIHSDADEYIQFGDEASLDEIAKLRPAFDKEDFLTAGNACGLND 219
Query: 180 GAGAVLLMKRSVAMRKGLPI-------LGVFRTFAAVGVDPA----IMGVGPAVAIPAAV 228
GA A +LM + A + GL L + A+ D + G GP A A+
Sbjct: 220 GAAAAILMSEAEAQKHGLQSKAREIQALEMITDMASTFEDKKVIKMVGGDGPIEAARKAL 279
Query: 229 KSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEK------------------INVNGG 270
+ AGL + D+DL E ++AFA+ LGL PE IN NGG
Sbjct: 280 EKAGLGIGDLDLIEAHDAFAANACATNEALGLCPEGQGGALVDRGDNTYGGKSIINPNGG 339
Query: 271 ALAIGHPLGTTGARCVATLLHEMKRRGRDC---RFGVISMCIGTGMGAAAVFE 320
A+AIGHP+G +GA A L E+K G+ +CIG G GAA E
Sbjct: 340 AIAIGHPIGASGAAICAELCFELKGEAGKRQGAGAGLALLCIGGGGGAAMCIE 392
>gnl|CDD|238201 cd00327, cond_enzymes, Condensing enzymes; Family of enzymes that
catalyze a (decarboxylating or non-decarboxylating)
Claisen-like condensation reaction. Members are share
strong structural similarity, and are involved in the
synthesis and degradation of fatty acids, and the
production of polyketides, a diverse group of natural
products.
Length = 254
Score = 77.1 bits (190), Expect = 2e-16
Identities = 43/160 (26%), Positives = 61/160 (38%), Gaps = 12/160 (7%)
Query: 171 AGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD----PAIMGVGPAVAIPA 226
DGA A ++ A+R+G + AA PA+ G G A A
Sbjct: 94 GSEEFVFGDGAAAAVVESEEHALRRGAHPQAEIVSTAATFDGASMVPAVSGEGLARAARK 153
Query: 227 AVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEK---INVNGGALAIGHPLGTTGA 283
A++ AGL DID E + LGLDP+ V+ + GHPLG G
Sbjct: 154 ALEGAGLTPSDIDYVEAHGTGTPIGDAVELALGLDPDGVRSPAVSATLIMTGHPLGAAGL 213
Query: 284 RCVATLLHEMKR-----RGRDCRFGVISMCIGTGMGAAAV 318
+ LL ++ R+ R ++ G AA V
Sbjct: 214 AILDELLLMLEHEFIPPTPREPRTVLLLGFGLGGTNAAVV 253
>gnl|CDD|238425 cd00829, SCP-x_thiolase, Thiolase domain associated with sterol
carrier protein (SCP)-x isoform and related proteins;
SCP-2 has multiple roles in intracellular lipid
circulation and metabolism. The N-terminal presequence
in the SCP-x isoform represents a peroxisomal
3-ketacyl-Coa thiolase specific for branched-chain acyl
CoAs, which is proteolytically cleaved from the sterol
carrier protein.
Length = 375
Score = 65.0 bits (159), Expect = 1e-11
Identities = 87/361 (24%), Positives = 128/361 (35%), Gaps = 87/361 (24%)
Query: 1 MAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWE- 59
+ A Y G P V +SG AV AAAI +G D+ + G E M+ P E
Sbjct: 58 LIAEYLGLLG-KPATRVEAAGASGSAAVRAAAAAIASGLADVVLVVGAEKMSDVPTGDEA 116
Query: 60 -GSVNPKVKAFEQAQNCLLPMGVTSENVA----HRFGVTRKEQDQAAVDSHRKAAAATAA 114
G + + L P + + A HR+G TR++ + AV +HR AA A
Sbjct: 117 GGRASDLEWEGPEPPGGLTPPALYA-LAARRYMHRYGTTREDLAKVAVKNHRNAARNPYA 175
Query: 115 GKFKDEIIPV----ATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTT 170
+F+ I + I DP
Sbjct: 176 -QFRKPITVEDVLNSRMIADP-------------------------------------LR 197
Query: 171 AGNSSQVSDGAGAVLLMKRSVAMRKGLP---ILGV-----FRTFAAVGVDPAIMGVGPAV 222
+ VSDGA AV+L A ILGV + + ++ +
Sbjct: 198 LLDCCPVSDGAAAVVLASEERARELTDRPVWILGVGAASDTPSLSERDDFLSLDAA--RL 255
Query: 223 AIPAAVKSAGLQLDDIDLFEINEAFASQ-FVYCRNKLGLDPE------------------ 263
A A K AG+ DDID+ E+ + F + + LG +
Sbjct: 256 AARRAYKMAGITPDDIDVAELYDCFTIAELLALED-LGFCEKGEGGKLVREGDTAIGGDL 314
Query: 264 KINVNGGALAIGHPLGTTGARCVATLLHEMKRRG-----RDCRFGVISMCIGTGMGAAAV 318
+N +GG L+ GHPLG TG + +++ R G+ IG G G+AAV
Sbjct: 315 PVNTSGGLLSKGHPLGATGLAQAVEAVRQLRGEAGARQVPGARVGLAHN-IG-GTGSAAV 372
Query: 319 F 319
Sbjct: 373 V 373
>gnl|CDD|235688 PRK06064, PRK06064, acetyl-CoA acetyltransferase; Provisional.
Length = 389
Score = 49.1 bits (118), Expect = 1e-06
Identities = 81/368 (22%), Positives = 127/368 (34%), Gaps = 104/368 (28%)
Query: 2 AAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT--VNPMA-- 57
A YAG R V C+SG A+ A+ +G D+ + AG+E MT P A
Sbjct: 67 IADYAGLAPIPATR-VEAACASGGAALRQAYLAVASGEADVVLAAGVEKMTDVPTPDATE 125
Query: 58 ---------WEGSVNPKVKAFEQAQNCLLPMGVTSENVA--------HRFGVTRKEQDQA 100
WE G T + H++G T ++
Sbjct: 126 AIARAGDYEWEEF-----------------FGATFPGLYALIARRYMHKYGTTEEDLALV 168
Query: 101 AVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLK 160
AV +H + A +F+ E I+V+ + + V++ KL
Sbjct: 169 AVKNHYNGSKNPYA-QFQKE--------------------ITVEQVLN-SPPVADPLKLL 206
Query: 161 PVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMR---KGLPILGVFRT--FAAVGVDPAI 215
+ S ++DGA AV+L A + I + A+
Sbjct: 207 ------------DCSPITDGAAAVILASEEKAKEYTDTPVWIKASGQASDTIALHDRKDF 254
Query: 216 MGVGPAV-AIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEK---------- 264
+ AV A A K AG++ DID+ E+++ F + LG +K
Sbjct: 255 TTLDAAVVAAEKAYKMAGIEPKDIDVAEVHDCFTIAEILAYEDLGF-AKKGEGGKLAREG 313
Query: 265 ---------INVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGT---- 311
+N +GG A GHP+G TG ++ +++ R VI G
Sbjct: 314 QTYIGGDIPVNPSGGLKAKGHPVGATGVSQAVEIVWQLRGEAEKGRQQVIGAGYGLTHNV 373
Query: 312 -GMGAAAV 318
G G AV
Sbjct: 374 GGTGHTAV 381
>gnl|CDD|223381 COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid
metabolism / Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 412
Score = 46.9 bits (112), Expect = 7e-06
Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 20/121 (16%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 232
+GAGA++L + A+ +G I + PA G G A+ AA+ AG
Sbjct: 231 GEGAGALVLEELEHALARGAKIYAEIVGYGTTSDAYHITAPAPDGEGAIRAMRAALADAG 290
Query: 233 LQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 282
L +DID + E+ A + V G + + V+ GH LG G
Sbjct: 291 LTPEDIDYINAHGTSTPANDKAESLAIKRV-----FGEHAKSLPVSSTKSLTGHTLGAAG 345
Query: 283 A 283
A
Sbjct: 346 A 346
Score = 29.9 bits (68), Expect = 2.0
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 13 PVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLES 50
P T C++G A+ D I+ G D+ I G E+
Sbjct: 154 PNYTPVTACATGAHAIGDAVRLIRLGKADVVIAGGAEA 191
>gnl|CDD|181013 PRK07516, PRK07516, acetyl-CoA acetyltransferase; Provisional.
Length = 389
Score = 43.8 bits (104), Expect = 8e-05
Identities = 41/135 (30%), Positives = 53/135 (39%), Gaps = 32/135 (23%)
Query: 175 SQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-------VDPAIMGVGPAVAIPAA 227
S VSDGA A++L A + FR A V DP GP A A
Sbjct: 213 SLVSDGAAALVLADAETARALQRAV--RFRARAHVNDFLPLSRRDPLAFE-GPRRAWQRA 269
Query: 228 VKSAGLQLDDIDLFEINEAF--ASQFVYCRNKLGLDPE------------------KINV 267
+ AG+ LDD+ E ++ F A Y +GL P +N
Sbjct: 270 LAQAGVTLDDLSFVETHDCFTIAELIEY--EAMGLAPPGQGARAIREGWTAKDGKLPVNP 327
Query: 268 NGGALAIGHPLGTTG 282
+GG A GHP+G TG
Sbjct: 328 SGGLKAKGHPIGATG 342
>gnl|CDD|183606 PRK12578, PRK12578, acetyl-CoA acetyltransferase; Provisional.
Length = 385
Score = 42.1 bits (99), Expect = 2e-04
Identities = 67/309 (21%), Positives = 111/309 (35%), Gaps = 67/309 (21%)
Query: 5 YAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESM----TVNPMAWEG 60
Y+G VP+R V C++GL A A+ +G D+ I G++ M T +A G
Sbjct: 67 YSGLTGKVPLR-VEAMCATGLAASLTAYTAVASGLVDMAIAVGVDKMTEVDTSTSLAIGG 125
Query: 61 SVNPKVKAFEQAQNCLLPMGVTSENVAH--RFGVTRKEQDQAAVDSHRKAAAATAAGKFK 118
+ P H +G T ++ +V +H+ A
Sbjct: 126 RGGNYQWEYHF-YGTTFPTYYALYATRHMAVYGTTEEQMALVSVKAHKYGA--------- 175
Query: 119 DEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVS 178
++PK +KPVT V++ ++ +S KL +S +S
Sbjct: 176 ----------MNPKAHFQKPVT--VEEVLKSRA-ISWPIKLL------------DSCPIS 210
Query: 179 DGAGAVLLMKRSVAMRKGL--PI----LGVFRTFAAVGVDPAIMGVGPAV-AIPAAVKSA 231
DG+ + + P+ +G +A V +G A A A
Sbjct: 211 DGSATAIFASEEKVKELKIDSPVWITGIGYANDYAYVARRGEWVGFKATQLAARQAYNMA 270
Query: 232 GLQLDDIDLFEINEAFASQFVYCRNKLGL-------------DPEK-----INVNGGALA 273
+ +DI++ +++AF + LG EK +N+ GG A
Sbjct: 271 KVTPNDIEVATVHDAFTIAEIMGYEDLGFTEKGKGGKFIEEGQSEKGGKVGVNLFGGLKA 330
Query: 274 IGHPLGTTG 282
GHPLG TG
Sbjct: 331 KGHPLGATG 339
>gnl|CDD|235771 PRK06289, PRK06289, acetyl-CoA acetyltransferase; Provisional.
Length = 403
Score = 40.1 bits (94), Expect = 0.001
Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 31/141 (21%)
Query: 175 SQVSDGAGAVLLMK----RSVAMRKGLP-ILGVFRTFAAVGVDPAIMG------VGPAV- 222
SQV+DG V+L R A + +P I G A +G++ + V P V
Sbjct: 220 SQVTDGGAGVVLASDAYLRDYADARPIPRIKGWGHRTAPLGLEQKLDRSAGDPYVLPHVR 279
Query: 223 -AIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPE------------------ 263
A+ A + AG+ LDD+D FE+++ F + +GL
Sbjct: 280 QAVLDAYRRAGVGLDDLDGFEVHDCFTPSEYLAIDHIGLTGPGESWKAIENGEIAIGGRL 339
Query: 264 KINVNGGALAIGHPLGTTGAR 284
IN +GG + GHP+G +G R
Sbjct: 340 PINPSGGLIGGGHPVGASGVR 360
Score = 29.3 bits (66), Expect = 3.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 21 CSSGLQAVADVAAAIKAGFYDIGIGAGLESM 51
C+SG A A ++AG YD+ + G+E M
Sbjct: 90 CASGSVATLAAMADLRAGRYDVALVVGVELM 120
>gnl|CDD|181173 PRK07937, PRK07937, lipid-transfer protein; Provisional.
Length = 352
Score = 39.7 bits (93), Expect = 0.002
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 177 VSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMG-----VGPAVAIPAAVKSA 231
++DGA AV+L A L + T ++ +G P+ A+ AA +
Sbjct: 204 ITDGAAAVVLAAGDRARE--LRERPAWITGIEHRIESPSLGARDLTRSPSTAL-AAEAAT 260
Query: 232 GLQLDDIDLFEINEAFASQFVYCRNKLGL-DPEKINVNGGALAIGHPLGTTG 282
G +D+ E++ F Q + R LGL D K+N +GGALA +P+ G
Sbjct: 261 GGDAGGVDVAELHAPFTHQELILREALGLGDKTKVNPSGGALA-ANPMFAAG 311
>gnl|CDD|240424 PTZ00455, PTZ00455, 3-ketoacyl-CoA thiolase; Provisional.
Length = 438
Score = 39.5 bits (92), Expect = 0.002
Identities = 68/317 (21%), Positives = 113/317 (35%), Gaps = 60/317 (18%)
Query: 13 PVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQA 72
P V C+SG AV A+ AG DI + G+E T G + + +
Sbjct: 112 PAMRVEGACASGGLAVQSAWEALLAGTSDIALVVGVEVQTTVSARVGGDYLARAADYRRQ 171
Query: 73 QN-------CLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVA 125
+ CL A R ++ D+ R AA A A G K+ + +
Sbjct: 172 RKLDDFTFPCLF---------AKRMKYIQEHGHFTMEDTARVAAKAYANGN-KNPLAHMH 221
Query: 126 TKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVL 185
T+ + + + P +E KP + + SQVSDG ++
Sbjct: 222 TRKLSLEF-------CTGASDKNPKFLGNE--TYKPFLRMT------DCSQVSDGGAGLV 266
Query: 186 LMKRSVAMRKGL-----PILGVFRTFAAVG---VDP--AIMGVGPAVAIPAAVKSAGLQL 235
L + GL ++ + A G DP A A A+ AG++
Sbjct: 267 LASEEGLQKMGLSPNDSRLVEIKSLACASGNLYEDPPDATRMFTSRAAAQKALSMAGVKP 326
Query: 236 DDIDLFEINEAFASQFVYCRNKLGL-DPEK-----------------INVNGGALAIGHP 277
D+ + E+++ F + LG+ + +N GG L+ GHP
Sbjct: 327 SDLQVAEVHDCFTIAELLMYEALGIAEYGHAKDLIRNGATALEGRIPVNTGGGLLSFGHP 386
Query: 278 LGTTGARCVATLLHEMK 294
+G TG + + + +MK
Sbjct: 387 VGATGVKQIMEVYRQMK 403
>gnl|CDD|181327 PRK08256, PRK08256, lipid-transfer protein; Provisional.
Length = 391
Score = 39.1 bits (92), Expect = 0.002
Identities = 69/315 (21%), Positives = 117/315 (37%), Gaps = 76/315 (24%)
Query: 12 VPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT-----------VNPMAWEG 60
+P+ VN CS+G A+ A+++G D + G E M +P+
Sbjct: 71 IPIVNVNNNCSTGSTALFLARQAVRSGAADCALALGFEQMQPGALGSVWDDRPSPLERFD 130
Query: 61 SVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDE 120
+++ F+ A L G ++G T + + V + R AA A +F+DE
Sbjct: 131 KALAELQGFDPAPPALRMFGGAGREHMEKYGTTAETFAKIGVKARRHAANNPYA-QFRDE 189
Query: 121 IIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDG 180
+++D + L +L+ + G
Sbjct: 190 Y--------------------TLEDVLASPMIWGPLTRLQ-------------CCPPTCG 216
Query: 181 AGAVLLMKRSVAMRKGLP----ILG------VFRTFAAVGVDPAIMGVGPAVAIPAAV-K 229
A A ++ A + GL I+ TF + ++G A V +
Sbjct: 217 AAAAIVCSEEFARKHGLDRAVEIVAQAMTTDTPSTFDGRSM-IDLVGYDMTRAAAQQVYE 275
Query: 230 SAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPE----------------KINVN--GGA 271
AG+ +DID+ E+++ F++ + LGL PE + VN GG
Sbjct: 276 QAGIGPEDIDVVELHDCFSANELLTYEALGLCPEGEAEKFIDDGDNTYGGRWVVNPSGGL 335
Query: 272 LAIGHPLGTTG-ARC 285
L+ GHPLG TG A+C
Sbjct: 336 LSKGHPLGATGLAQC 350
>gnl|CDD|238426 cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III
(KASIII) initiates the elongation in type II fatty acid
synthase systems. It is found in bacteria and plants.
Elongation of fatty acids in the type II systems occurs
by Claisen condensation of malonyl-acyl carrier protein
(ACP) with acyl-ACP. KASIII initiates this process by
specifically using acetyl-CoA over acyl-CoA.
Length = 320
Score = 39.1 bits (92), Expect = 0.002
Identities = 45/161 (27%), Positives = 63/161 (39%), Gaps = 41/161 (25%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAV------AIPAAVKS- 230
SDG+GA LL + R A G DP ++ G V +P +++
Sbjct: 181 SDGSGADLLTIPAGGSR--------SPFEDAEGGDPYLVMDGREVFKFAVRLMPESIEEA 232
Query: 231 ---AGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGT 280
AGL DDID F I EA A +LGL EK+ VN G
Sbjct: 233 LEKAGLTPDDIDWFVPHQANLRIIEAVAK-------RLGLPEEKVVVN------LDRYGN 279
Query: 281 TGARCVATLLHEMKRRGRDCRFGVISMC-IGTGM--GAAAV 318
T A + L E G+ + ++ + G G+ GAA +
Sbjct: 280 TSAASIPLALDEAIEEGKLKKGDLVLLLGFGAGLTWGAALL 320
>gnl|CDD|238429 cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty
acids into a large variety of different products, called
polyketides, by successive decarboxylating Claisen
condensations. PKSs can be divided into 2 groups,
modular type I PKSs consisting of one or more large
multifunctional proteins and iterative type II PKSs,
complexes of several monofunctional subunits.
Length = 421
Score = 38.7 bits (91), Expect = 0.004
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAV--GVDPAIM---GVGPAVAIPAAVKSAG 232
+G G V+L + S A+R G I V R A G I G A I A AG
Sbjct: 234 GEGVGVVVLKRLSDALRDGDRIYAVIRGSAVNQDGRTKGITAPSGEAQAALIRRAYARAG 293
Query: 233 LQLDDIDLFE 242
+ DID E
Sbjct: 294 VDPSDIDYVE 303
>gnl|CDD|117118 pfam08541, ACP_syn_III_C, 3-Oxoacyl-[acyl-carrier-protein (ACP)]
synthase III C terminal. This domain is found on
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
EC:2.3.1.41, the enzyme responsible for initiating the
chain of reactions of the fatty acid synthase in plants
and bacteria.
Length = 90
Score = 35.1 bits (82), Expect = 0.006
Identities = 31/100 (31%), Positives = 40/100 (40%), Gaps = 24/100 (24%)
Query: 231 AGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 283
AGL DDID F I +A A +LGL PEK+ VN + G T A
Sbjct: 4 AGLTPDDIDWFVPHQANLRIIDAVA-------KRLGLPPEKVVVN-----LDR-YGNTSA 50
Query: 284 RCVATLLHEMKRRGRDCRFGVISMCIGTGMG---AAAVFE 320
+ L E G+ ++ + G G G AAV
Sbjct: 51 ASIPLALDEAVEEGKLKPGDLVLLV-GFGAGLTWGAAVLR 89
>gnl|CDD|238430 cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP)
synthase (KAS), type I and II. KASs are responsible for
the elongation steps in fatty acid biosynthesis. KASIII
catalyses the initial condensation and KAS I and II
catalyze further elongation steps by Claisen
condensation of malonyl-acyl carrier protein (ACP) with
acyl-ACP.
Length = 406
Score = 37.9 bits (89), Expect = 0.006
Identities = 39/131 (29%), Positives = 53/131 (40%), Gaps = 25/131 (19%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 232
+GAG ++L A +G I + A P G G A A+ AA+ AG
Sbjct: 230 GEGAGVLVLESLEHAKARGAKIYAEILGYGASSDAYHITAPDPDGEGAARAMRAALADAG 289
Query: 233 LQLDDIDLFEIN------------EAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGT 280
L +DID IN E+ A + V G +K+ V+ GH LG
Sbjct: 290 LSPEDIDY--INAHGTSTPLNDAAESKAIKRV-----FGEHAKKVPVSSTKSMTGHLLGA 342
Query: 281 TGA-RCVATLL 290
GA +ATLL
Sbjct: 343 AGAVEAIATLL 353
Score = 29.8 bits (68), Expect = 2.1
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 13 PVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 60
P TV+ C+SG A+ D A I+ G D+ I G E++ + P+ G
Sbjct: 153 PNYTVSTACASGAHAIGDAARLIRLGRADVVIAGGAEAL-ITPLTLAG 199
>gnl|CDD|238424 cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a
subclass of decarboxylating condensing enzymes,
including beta-ketoacyl [ACP] synthase, type I and II
and polyketide synthases.They are characterized by the
utlization of acyl carrier protein (ACP) thioesters as
primer substrates, as well as the nature of their active
site residues.
Length = 407
Score = 37.8 bits (88), Expect = 0.007
Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 13/130 (10%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILG--VFRTFAAVGVDPAIMGVGPAV--AIPAAVKSAGL 233
++GAG ++L + +A+ +G PI G G ++ G + AI A+ AGL
Sbjct: 230 AEGAGVLVLERAELALARGAPIYGRVAGTASTTDGAGRSVPAGGKGIARAIRTALAKAGL 289
Query: 234 QLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALA-------IGHPLGTTGARCV 286
LDD+D+ I+ S + E G L GH G GA +
Sbjct: 290 SLDDLDV--ISAHGTSTPANDVAESRAIAEVAGALGAPLPVTAQKALFGHSKGAAGALQL 347
Query: 287 ATLLHEMKRR 296
L ++
Sbjct: 348 IGALQSLEHG 357
Score = 28.2 bits (63), Expect = 7.3
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 13 PVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAW 58
P++T C++ L+A+ AI++G DI + G+E ++
Sbjct: 154 PIKTPVGACATALEALDLAVEAIRSGKADIVVVGGVEDPLEEGLSG 199
>gnl|CDD|223409 COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein].
Length = 323
Score = 36.4 bits (85), Expect = 0.016
Identities = 40/152 (26%), Positives = 51/152 (33%), Gaps = 44/152 (28%)
Query: 178 SDGAGAVLLMK-------RSVAMR---KGLPIL----GVFRTFAAVGVDPAIMGVGPAV- 222
DGAGAV+L + +L G T ++ G V
Sbjct: 159 GDGAGAVVLEATEDDNGILDTDLGSDGSQGDLLYLPGGGSATPKEESGGGLLVMDGREVF 218
Query: 223 --AIPAAVKS-------AGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKIN 266
A+ A K+ AGL +DID F I EA A KLG+ EK+
Sbjct: 219 KFAVRAMPKAIEEVLEKAGLTPEDIDWFVPHQANLRIIEAIA-------KKLGIPEEKVV 271
Query: 267 VNGGALAIGHPLGTTGARCVATLLHEMKRRGR 298
V G T A + L E R GR
Sbjct: 272 VT------VDKYGNTSAASIPLALDEALREGR 297
>gnl|CDD|235785 PRK06365, PRK06365, acetyl-CoA acetyltransferase; Provisional.
Length = 430
Score = 36.0 bits (83), Expect = 0.027
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 20/90 (22%)
Query: 227 AVKSAGLQ--LDDIDLFEINEAFASQFVYCRNKLGL----------------DPEKINVN 268
A + AG+ L+D+DL E+++A+ S + LGL P K+ VN
Sbjct: 302 AYEMAGITDPLNDLDLIELHDAYTSSEIQTYEDLGLCKYGEGGQFIESGKPELPGKLPVN 361
Query: 269 --GGALAIGHPLGTTGARCVATLLHEMKRR 296
GG LA GH +G TG + +++ R
Sbjct: 362 PSGGLLAAGHAVGATGIMQAVFMFWQLQGR 391
>gnl|CDD|235987 PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 411
Score = 34.8 bits (81), Expect = 0.058
Identities = 33/120 (27%), Positives = 47/120 (39%), Gaps = 20/120 (16%)
Query: 179 DGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAGL 233
+GAG ++L + A +G I + G PA G G A A+ A+K AG+
Sbjct: 232 EGAGILVLEELEHAKARGAKIYAEVVGYGMTGDAYHMTAPAPDGEGAARAMKLALKDAGI 291
Query: 234 QLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 283
+DID + E A + V G K+ V+ GH LG GA
Sbjct: 292 NPEDIDYINAHGTSTPAGDKAETQAIKRV-----FGEHAYKVAVSSTKSMTGHLLGAAGA 346
Score = 30.1 bits (69), Expect = 1.6
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 13 PVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMA 57
P ++ C++G A+ D A I G D+ + G E+ + P+
Sbjct: 154 PNHSIVTACATGAHAIGDAARLIAYGDADVMVAGGAEA-AITPLG 197
>gnl|CDD|200247 TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II.
3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II,
FabF) is involved in the condensation step of fatty acid
biosynthesis in which the malonyl donor group is
decarboxylated and the resulting carbanion used to
attack and extend the acyl group attached to the acyl
carrier protein. Most genomes encoding fatty acid
biosynthesis contain a number of condensing enzymes,
often of all three types: 1, 2 and 3. Synthase 2 is
mechanistically related to synthase 1 (KAS-I, FabB)
containing a number of absolutely conserved catalytic
residues in common. This model is based primarily on
genes which are found in apparent operons with other
essential genes of fatty acid biosynthesis
(GenProp0681). The large gap between the trusted cutoff
and the noise cutoff contains many genes which are not
found adjacent to genes of the fatty acid pathway in
genomes that often also contain a better hit to this
model. These genes may be involved in other processes
such as polyketide biosyntheses. Some genomes contain
more than one above-trusted hit to this model which may
result from recent paralogous expansions. Second hits to
this model which are not next to other fatty acid
biosynthesis genes may be involved in other processes.
FabB sequences should fall well below the noise cutoff
of this model [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 407
Score = 32.5 bits (75), Expect = 0.28
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 16/89 (17%)
Query: 213 PAIMGVGPAVAIPAAVKSAGLQLDDID----------LFEINEAFASQFVYCRNKLGLDP 262
PA G G A A+ AA+K AG+ +D+D L + E A + V G
Sbjct: 270 PAPEGEGAARAMRAALKDAGINPEDVDYINAHGTSTPLGDKAETKAIKRV-----FGDHA 324
Query: 263 EKINVNGGALAIGHPLGTTGA-RCVATLL 290
K+ V+ GH LG GA + T+L
Sbjct: 325 YKLAVSSTKSMTGHLLGAAGAIEAIFTVL 353
Score = 29.0 bits (66), Expect = 4.4
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 21 CSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMA 57
C++G A+ D I+ G D+ I G E+ + P+
Sbjct: 161 CATGTHAIGDAFRLIQRGDADVMIAGGAEA-AITPLG 196
>gnl|CDD|214836 smart00825, PKS_KS, Beta-ketoacyl synthase. The structure of
beta-ketoacyl synthase is similar to that of the
thiolase family and also chalcone synthase. The active
site of beta-ketoacyl synthase is located between the N
and C-terminal domains.
Length = 298
Score = 31.9 bits (74), Expect = 0.46
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILGVFR 204
+G G V+L + S A+R G PIL V R
Sbjct: 161 GEGVGVVVLKRLSDALRDGDPILAVIR 187
>gnl|CDD|221738 pfam12727, PBP_like, PBP superfamily domain. This family belongs
to the periplasmic binding domain superfamily. It is
often associated with a helix-turn-helix domain.
Length = 193
Score = 31.0 bits (71), Expect = 0.59
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 25/58 (43%)
Query: 13 PVRTVNRQCSSGLQAVAD-------------------------VAAAIKAGFYDIGIG 45
+R VNRQ SG + + D VAAA+ +G D G+G
Sbjct: 93 GIRFVNRQRGSGTRVLLDELLRKAGISPEDINGYAREVRSHLAVAAAVASGKADAGLG 150
>gnl|CDD|235653 PRK05952, PRK05952, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 381
Score = 31.6 bits (72), Expect = 0.59
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 18/119 (15%)
Query: 182 GAVLLMK-RSVAMRKGLPILGVFRTF-----AAVGVDPAIMGVGPAVAIPAAVKSAGLQL 235
GA+L+++ +A ++G I G F A P G AI + +GL
Sbjct: 212 GAILVLESAELAQKRGAKIYGQILGFGLTCDAYHMSAPEPDGKSAIAAIQQCLARSGLTP 271
Query: 236 DDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVA 287
+DID +N+ + + L P ++ V+ A GH LG +GA VA
Sbjct: 272 EDIDYIHAHGTATRLNDQREANLIQ-----ALFPHRVAVSSTKGATGHTLGASGALGVA 325
>gnl|CDD|180373 PRK06059, PRK06059, lipid-transfer protein; Provisional.
Length = 399
Score = 31.7 bits (72), Expect = 0.61
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 12 VPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESM 51
PV + C+SG QA+ A I AG D+ + G ++
Sbjct: 76 APVSSSYAACASGSQALQSARAQILAGLCDVALVVGADTT 115
Score = 29.7 bits (67), Expect = 2.5
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 21/88 (23%)
Query: 177 VSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAI---------MGVGPAVAIPAA 227
SDGA A+++ +S A R + GV A V P + A+PA
Sbjct: 211 TSDGAAALIVASKSFARRHLGSVAGVPSVRAISTVTPRYPQHLPELPDIATDSTAAVPAP 270
Query: 228 VKS------------AGLQLDDIDLFEI 243
+ AG+ +D+ L E+
Sbjct: 271 ERVFKDQILDAAYAEAGIGPEDLSLAEV 298
>gnl|CDD|236475 PRK09352, PRK09352, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 319
Score = 31.2 bits (72), Expect = 0.74
Identities = 29/104 (27%), Positives = 39/104 (37%), Gaps = 30/104 (28%)
Query: 202 VFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYC 254
VF+ FA + A+++AGL +DID I +A A
Sbjct: 213 VFK-FAVRELAKVAR---------EALEAAGLTPEDIDWLVPHQANLRIIDATA------ 256
Query: 255 RNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGR 298
KLGL EK+ V + G T A + L E R GR
Sbjct: 257 -KKLGLPMEKVVVT-----VDK-YGNTSAASIPLALDEAVRDGR 293
>gnl|CDD|179591 PRK03545, PRK03545, putative arabinose transporter; Provisional.
Length = 390
Score = 31.0 bits (71), Expect = 0.87
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 29 ADVAAAIKAGFYDIGIGAG 47
DVA A+ +G ++IGIGAG
Sbjct: 327 TDVAMALFSGIFNIGIGAG 345
>gnl|CDD|235715 PRK06147, PRK06147, 3-oxoacyl-(acyl carrier protein) synthase;
Validated.
Length = 348
Score = 30.8 bits (70), Expect = 1.00
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 14/72 (19%)
Query: 179 DGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPA---------IMGVGPAVAIPAAVK 229
+ A AVLL + + GLP+LG+ +G +PA + G G AI AA+
Sbjct: 191 EAAAAVLLGRPAGGEAPGLPLLGL-----GLGREPAPVGESEDLPLRGDGLTQAIRAALA 245
Query: 230 SAGLQLDDIDLF 241
AG L+D+D
Sbjct: 246 EAGCGLEDMDYR 257
>gnl|CDD|180433 PRK06157, PRK06157, acetyl-CoA acetyltransferase; Validated.
Length = 398
Score = 30.0 bits (68), Expect = 2.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 12 VPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLE 49
+PV V C++G +A A+ +G YDI + G+E
Sbjct: 79 IPVTRVENFCATGSEAFRGAVYAVASGAYDIALALGVE 116
>gnl|CDD|225620 COG3078, COG3078, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 169
Score = 29.0 bits (65), Expect = 2.3
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 93 TRKEQDQAAVDSHRK------AAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDG 146
TR+E D A D R+ A+ + +G ++ + DP+ G +KP+ + V +
Sbjct: 22 TREELDAEARDRKRQKKRKGLASGSRHSGGNENSGNKQQNQKKDPRIGSKKPIPLGVTEK 81
Query: 147 I-RPNTSVSELAKLKP 161
+ + + SE KL P
Sbjct: 82 VTKQHKPKSEKPKLSP 97
>gnl|CDD|236374 PRK09077, PRK09077, L-aspartate oxidase; Provisional.
Length = 536
Score = 29.1 bits (66), Expect = 3.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 291 HEMKRRGRDCRFGVIS 306
HEMKR G DC + IS
Sbjct: 298 HEMKRLGADCVYLDIS 313
>gnl|CDD|106976 PHA00667, PHA00667, hypothetical protein.
Length = 158
Score = 28.1 bits (61), Expect = 4.3
Identities = 8/53 (15%), Positives = 12/53 (22%)
Query: 95 KEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGI 147
+ AA A + + D GD P D +
Sbjct: 61 AATAPTPPTAEVGAADAPESKAENSAPVQAGDAGQDAAAGDAAPTYQDTADAV 113
>gnl|CDD|234351 TIGR03773, anch_rpt_wall, putative ABC transporter-associated
repeat protein. Members of this protein family occur in
genomes that contain a three-gene ABC transporter operon
associated with the presence of domain TIGR03769. That
domain occurs as a single-copy insert in the
substrate-binding protein, and occurs in two or more
copies in members of this protein family. Members of
this family typically are encoded adjacent to the said
transporter operon and may serve as a substrate
receptor.
Length = 513
Score = 28.8 bits (64), Expect = 4.6
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 112 TAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTA 171
+ G +K ++ AT K D +T +V D P +V L+ P G
Sbjct: 408 SKPGTYKLQVTQSATTTNGKKASDTTTLTFAVGDNNDPVGAVGPLSASTPTDGAPGGKGC 467
Query: 172 GNSSQ--VSDGAGA 183
+++ G A
Sbjct: 468 ELAAKGAEGSGKKA 481
>gnl|CDD|225858 COG3321, COG3321, Polyketide synthase modules and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 1061
Score = 29.0 bits (65), Expect = 5.1
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 178 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV----GPAVA--IPAAVKSA 231
+GAG V+L + S A R G I V R +AV D G+ A A I A+ A
Sbjct: 238 GEGAGVVVLKRLSDAERDGDRIYAVIR-GSAVNQDGRSNGLTAPNLEAQADVIREALADA 296
Query: 232 GLQLDDIDLFE 242
G+ + E
Sbjct: 297 GIDPATVQYVE 307
>gnl|CDD|180839 PRK07103, PRK07103, polyketide beta-ketoacyl:acyl carrier protein
synthase; Validated.
Length = 410
Score = 28.8 bits (65), Expect = 5.1
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 180 GAGAVLLMKRSVAMRKGLPILGVFRTFAAV-----GVDPAIMGVGPAVAIPAAVKSAGLQ 234
GAV+L A R+G ++ G DP++ G I AA++ AGL
Sbjct: 240 ACGAVVLESAESARRRGARPYAKLLGWSMRLDANRGPDPSL--EGEMRVIRAALRRAGLG 297
Query: 235 LDDID 239
+DID
Sbjct: 298 PEDID 302
>gnl|CDD|235781 PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 424
Score = 28.4 bits (64), Expect = 5.4
Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 21 CSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 60
C++G+QA+ D A I++G D+ + G E+ ++ ++ G
Sbjct: 173 CAAGVQAIGDAARLIRSGEADVAVCGGTEA-AIDRVSLAG 211
>gnl|CDD|240032 cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 129
Score = 27.3 bits (61), Expect = 5.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 177 VSDGAGAVLLMKRSVAMRKGLP 198
V D G VLL++RS LP
Sbjct: 9 VRDDEGRVLLIRRSDNGLWALP 30
>gnl|CDD|238421 cd00825, decarbox_cond_enzymes, decarboxylating condensing enzymes;
Family of enzymes that catalyze the formation of a new
carbon-carbon bond by a decarboxylating Claisen-like
condensation reaction. Members are involved in the
synthesis of fatty acids and polyketides, a diverse
group of natural products. Both pathways are an
iterative series of additions of small carbon units,
usually acetate, to a nascent acyl group. There are 2
classes of decarboxylating condensing enzymes, which can
be distinguished by sequence similarity, type of active
site residues and type of primer units (acetyl CoA or
acyl carrier protein (ACP) linked units).
Length = 332
Score = 28.4 bits (63), Expect = 6.2
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 179 DGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV------GPAVAIPAAVKSAG 232
DGAGA+++ + A+ +G I AA +D A MG G A A A+ AG
Sbjct: 161 DGAGALVVEELEHALARGAHIYAEIVGTAA-TIDGAGMGAFAPSAEGLARAAKEALAVAG 219
Query: 233 LQLDDIDLFE 242
L + DID
Sbjct: 220 LTVWDIDYLV 229
>gnl|CDD|180434 PRK06158, PRK06158, thiolase; Provisional.
Length = 384
Score = 28.1 bits (63), Expect = 6.8
Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 27/126 (21%)
Query: 177 VSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKS------ 230
V+DGAGAV++++ A + LP V+ AA + P + + AA +S
Sbjct: 208 VTDGAGAVVMVRADRA--RDLPRPPVYVLGAAAATWHRQISSMPDLTVTAAAESGPRAFA 265
Query: 231 -AGLQLDDIDLFEINEAFASQFVYCRNKLGLDPE------------------KINVNGGA 271
AGL DID+ E+ +AF + LG + +N NGG
Sbjct: 266 MAGLTPADIDVVELYDAFTINTILFLEDLGFCAKGEGGAFVEGGRIAPGGRLPVNTNGGG 325
Query: 272 LAIGHP 277
L+ HP
Sbjct: 326 LSCVHP 331
>gnl|CDD|180380 PRK06066, PRK06066, acetyl-CoA acetyltransferase; Provisional.
Length = 385
Score = 27.8 bits (62), Expect = 9.2
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 265 INVNGGALAIGHPLGTTGAR----CVATLLHEMKRRGRDCRFGVISMCIG--TGMGAAAV 318
+N +GG LA G PL +G V L E R V++ G T G+ V
Sbjct: 323 VNPSGGHLAKGVPLEASGLSLLLDAVEYLRGEAGARQGKAERAVVASWRGIPTLTGSVVV 382
Query: 319 FER 321
ER
Sbjct: 383 VER 385
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.389
Gapped
Lambda K H
0.267 0.0940 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,681,958
Number of extensions: 1739540
Number of successful extensions: 2219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2040
Number of HSP's successfully gapped: 116
Length of query: 345
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 247
Effective length of database: 6,590,910
Effective search space: 1627954770
Effective search space used: 1627954770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.1 bits)