BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019141
(345 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1O61|A Chain A, Crystal Structure Of A Plp-Dependent Enzyme With Plp
pdb|1O61|B Chain B, Crystal Structure Of A Plp-Dependent Enzyme With Plp
pdb|1O62|A Chain A, Crystal Structure Of The Apo Form Of A Plp-Dependent
Enzyme
pdb|1O62|B Chain B, Crystal Structure Of The Apo Form Of A Plp-Dependent
Enzyme
pdb|1O69|A Chain A, Crystal Structure Of A Plp-Dependent Enzyme
pdb|1O69|B Chain B, Crystal Structure Of A Plp-Dependent Enzyme
Length = 394
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 102 LTHL-APLSIFADIVDL-GAMGLVMVEDV---MISMKQRPALKAFGDFSVFSYGIGVAVY 156
LTHL + +IV++ +V++ED + S + AL FG+F V+SY G +
Sbjct: 128 LTHLYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYN-GNKII 186
Query: 157 AFEGVGMILPLESETRNKQRF--GRILGWCMAFISLLYG 193
G GM++ E K RF + C+ + L YG
Sbjct: 187 TTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYG 225
>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version
pdb|3FQA|B Chain B, Gabaculien Complex Of Gabaculine Resistant Gsam Version
Length = 427
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 30/67 (44%)
Query: 14 IHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQ 73
+ G I+ G G +CG ++A+ V + G + N L M+N++ S
Sbjct: 49 VDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSI 108
Query: 74 TILGFLS 80
++ F++
Sbjct: 109 EMVRFVN 115
>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam
pdb|3FQ7|B Chain B, Gabaculine Complex Of Gsam
pdb|3USF|A Chain A, Crystal Structure Of Dava-4
pdb|3USF|B Chain B, Crystal Structure Of Dava-4
Length = 427
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 30/67 (44%)
Query: 14 IHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQ 73
+ G I+ G G +CG ++A+ V + G + N L M+N++ S
Sbjct: 49 VDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSI 108
Query: 74 TILGFLS 80
++ F++
Sbjct: 109 EMVRFVN 115
>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam
pdb|3FQ8|B Chain B, M248i Mutant Of Gsam
Length = 427
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 30/67 (44%)
Query: 14 IHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQ 73
+ G I+ G G +CG ++A+ V + G + N L M+N++ S
Sbjct: 49 VDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSI 108
Query: 74 TILGFLS 80
++ F++
Sbjct: 109 EMVRFVN 115
>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOY|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HOZ|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOZ|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP1|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP1|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP2|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP2|B Chain B, Inter-Subunit Signaling In Gsam
Length = 432
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 30/67 (44%)
Query: 14 IHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQ 73
+ G I+ G G +CG ++A+ V + G + N L M+N++ S
Sbjct: 54 VDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSI 113
Query: 74 TILGFLS 80
++ F++
Sbjct: 114 EMVRFVN 120
>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|2GSA|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|4GSA|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|4GSA|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|3GSB|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
pdb|3GSB|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
Length = 432
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 30/67 (44%)
Query: 14 IHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQ 73
+ G I+ G G +CG ++A+ V + G + N L M+N++ S
Sbjct: 54 VDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSI 113
Query: 74 TILGFLS 80
++ F++
Sbjct: 114 EMVRFVN 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.144 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,320,734
Number of Sequences: 62578
Number of extensions: 361993
Number of successful extensions: 780
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 775
Number of HSP's gapped (non-prelim): 8
length of query: 345
length of database: 14,973,337
effective HSP length: 100
effective length of query: 245
effective length of database: 8,715,537
effective search space: 2135306565
effective search space used: 2135306565
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.6 bits)