Query 019141
Match_columns 345
No_of_seqs 123 out of 1172
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 07:02:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019141.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019141hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304 Amino acid transporter 100.0 6.8E-54 1.5E-58 394.2 22.6 332 1-340 95-449 (449)
2 PTZ00206 amino acid transporte 100.0 1.5E-49 3.2E-54 381.0 18.5 325 18-342 118-466 (467)
3 KOG1303 Amino acid transporter 100.0 9.4E-44 2E-48 332.4 21.1 336 3-343 88-437 (437)
4 PF01490 Aa_trans: Transmembra 100.0 9E-46 1.9E-50 351.8 -1.2 329 1-337 51-408 (409)
5 PLN03074 auxin influx permease 100.0 1.9E-42 4.2E-47 330.5 16.8 333 2-345 95-456 (473)
6 KOG1305 Amino acid transporter 100.0 1.1E-39 2.4E-44 303.7 13.3 324 19-345 65-410 (411)
7 KOG4303 Vesicular inhibitory a 100.0 6.3E-38 1.4E-42 273.4 3.2 331 3-342 166-516 (524)
8 COG0814 SdaC Amino acid permea 99.9 1.4E-24 2.9E-29 205.0 17.7 310 21-337 72-412 (415)
9 TIGR00837 araaP aromatic amino 99.8 3.7E-18 7.9E-23 160.9 18.1 284 17-308 55-359 (381)
10 PF03222 Trp_Tyr_perm: Tryptop 99.8 6.8E-17 1.5E-21 151.7 20.0 285 17-309 61-366 (394)
11 PRK15132 tyrosine transporter 99.7 1.3E-16 2.7E-21 149.5 18.8 306 18-333 62-392 (403)
12 PRK10483 tryptophan permease; 99.7 6.7E-16 1.5E-20 144.1 21.1 307 17-333 69-403 (414)
13 PRK09664 tryptophan permease T 99.7 5.2E-15 1.1E-19 138.0 20.5 307 17-331 67-402 (415)
14 PRK13629 threonine/serine tran 99.5 9.2E-13 2E-17 123.2 17.9 311 18-335 79-441 (443)
15 TIGR00814 stp serine transport 99.5 5.1E-13 1.1E-17 125.4 15.2 300 20-326 65-396 (397)
16 TIGR00909 2A0306 amino acid tr 99.1 9.6E-09 2.1E-13 98.4 19.9 295 7-307 55-375 (429)
17 PF13520 AA_permease_2: Amino 99.1 1.4E-08 3.1E-13 97.2 19.0 285 17-311 58-378 (426)
18 PRK11021 putative transporter; 99.0 1.1E-07 2.3E-12 90.7 23.2 288 6-309 50-363 (410)
19 TIGR03810 arg_ornith_anti argi 99.0 4.7E-08 1E-12 94.7 19.9 292 6-308 53-380 (468)
20 PRK10655 potE putrescine trans 98.9 1.7E-07 3.8E-12 90.0 21.5 184 6-200 56-245 (438)
21 TIGR00908 2A0305 ethanolamine 98.9 4.1E-07 8.9E-12 87.6 20.8 179 6-198 58-245 (442)
22 TIGR00905 2A0302 transporter, 98.8 5.5E-07 1.2E-11 87.4 20.9 293 7-309 60-385 (473)
23 TIGR00906 2A0303 cationic amin 98.8 4.6E-07 9.9E-12 89.5 20.1 294 6-307 80-410 (557)
24 PRK10746 putative transport pr 98.8 7.8E-07 1.7E-11 86.0 19.8 289 6-308 61-388 (461)
25 PRK10435 cadB lysine/cadaverin 98.8 8.5E-07 1.8E-11 85.2 19.9 188 6-204 55-247 (435)
26 PRK10644 arginine:agmatin anti 98.8 1E-06 2.2E-11 85.0 20.3 186 7-202 59-249 (445)
27 TIGR00912 2A0309 spore germina 98.8 4.9E-07 1.1E-11 84.6 17.1 271 21-307 64-353 (359)
28 KOG1287 Amino acid transporter 98.8 1.4E-06 3E-11 82.4 19.8 290 7-309 66-387 (479)
29 TIGR00913 2A0310 amino acid pe 98.7 2.8E-06 6.1E-11 82.6 21.7 179 6-198 54-251 (478)
30 PRK10249 phenylalanine transpo 98.7 1.6E-06 3.4E-11 83.9 19.7 287 5-307 71-394 (458)
31 PRK10197 gamma-aminobutyrate t 98.7 2.7E-06 5.9E-11 81.9 21.2 287 5-307 42-367 (446)
32 PRK11357 frlA putative fructos 98.7 2.1E-06 4.5E-11 82.7 18.9 56 144-199 194-250 (445)
33 PRK10238 aromatic amino acid t 98.6 2.9E-06 6.3E-11 82.0 18.6 286 6-307 63-385 (456)
34 PRK15049 L-asparagine permease 98.6 3.9E-06 8.4E-11 82.0 19.5 160 146-307 221-405 (499)
35 TIGR01773 GABAperm gamma-amino 98.6 1.1E-05 2.4E-10 77.9 22.2 185 6-204 63-261 (452)
36 TIGR03813 put_Glu_GABA_T putat 98.6 1.2E-05 2.5E-10 78.2 21.9 52 153-204 202-254 (474)
37 PRK11387 S-methylmethionine tr 98.6 1.2E-05 2.7E-10 78.0 21.5 231 6-250 66-319 (471)
38 TIGR00930 2a30 K-Cl cotranspor 98.6 1.1E-05 2.4E-10 84.0 21.7 171 26-198 148-334 (953)
39 PRK11049 D-alanine/D-serine/gl 98.6 1.4E-05 3.1E-10 77.5 21.5 278 19-308 82-399 (469)
40 PRK10580 proY putative proline 98.5 3.6E-05 7.8E-10 74.5 23.2 180 6-199 60-254 (457)
41 TIGR00911 2A0308 L-type amino 98.5 1.8E-05 4E-10 77.4 19.9 61 143-203 233-294 (501)
42 COG1113 AnsP Gamma-aminobutyra 98.5 4.3E-06 9.2E-11 78.0 14.3 278 17-307 73-388 (462)
43 COG0531 PotE Amino acid transp 98.4 2.7E-05 5.8E-10 75.3 19.5 293 7-308 64-389 (466)
44 TIGR00907 2A0304 amino acid pe 98.4 8.7E-05 1.9E-09 72.3 22.5 50 147-196 219-269 (482)
45 PRK10836 lysine transporter; P 98.3 0.00012 2.6E-09 71.5 21.9 60 144-203 204-264 (489)
46 TIGR03428 ureacarb_perm permea 98.3 0.00028 6E-09 68.7 22.6 196 7-204 66-273 (475)
47 TIGR00910 2A0307_GadC glutamat 98.3 9.6E-05 2.1E-09 72.4 19.5 50 148-197 197-247 (507)
48 PF03845 Spore_permease: Spore 98.1 6.8E-05 1.5E-09 69.0 14.3 226 19-257 60-298 (320)
49 COG1457 CodB Purine-cytosine p 98.0 0.00031 6.7E-09 66.4 16.6 264 25-304 85-358 (442)
50 TIGR02358 thia_cytX probable h 98.0 0.00045 9.8E-09 65.2 17.2 260 19-293 56-319 (386)
51 KOG1286 Amino acid transporter 98.0 0.00048 1E-08 67.5 17.2 296 6-307 82-422 (554)
52 PRK15238 inner membrane transp 98.0 0.0027 5.9E-08 62.1 22.4 54 146-199 212-266 (496)
53 PF00324 AA_permease: Amino ac 97.9 6.4E-05 1.4E-09 73.2 9.0 195 6-206 47-262 (478)
54 COG3949 Uncharacterized membra 97.4 0.012 2.5E-07 53.2 15.5 49 19-67 64-112 (349)
55 TIGR00800 ncs1 NCS1 nucleoside 97.3 0.0099 2.1E-07 57.3 15.6 235 19-253 74-329 (442)
56 PRK11375 allantoin permease; P 97.3 0.014 3.1E-07 56.8 16.1 278 19-297 87-392 (484)
57 PRK11017 codB cytosine permeas 97.2 0.013 2.8E-07 55.8 14.7 257 19-294 69-329 (404)
58 COG0833 LysP Amino acid transp 96.9 0.43 9.3E-06 46.3 21.6 289 4-307 94-427 (541)
59 PF00474 SSF: Sodium:solute sy 96.8 0.033 7.1E-07 53.0 14.3 91 17-119 65-157 (406)
60 TIGR02119 panF sodium/pantothe 96.8 0.18 4E-06 49.0 19.3 174 17-202 103-293 (471)
61 PRK12488 acetate permease; Pro 96.8 0.5 1.1E-05 46.9 22.1 88 17-116 126-214 (549)
62 TIGR00813 sss transporter, SSS 96.6 0.2 4.4E-06 47.7 17.5 89 17-117 62-151 (407)
63 PRK09442 panF sodium/panthothe 96.5 0.63 1.4E-05 45.4 20.5 177 17-205 104-300 (483)
64 KOG1289 Amino acid transporter 96.4 0.29 6.3E-06 47.4 16.9 60 146-205 253-313 (550)
65 TIGR00796 livcs branched-chain 96.2 0.66 1.4E-05 43.6 18.0 135 164-305 200-347 (378)
66 PRK00701 manganese transport p 96.1 1.4 3E-05 42.4 23.3 48 19-66 92-139 (439)
67 PF02133 Transp_cyt_pur: Perme 96.0 0.012 2.6E-07 56.6 5.9 282 19-301 69-371 (440)
68 KOG3832 Predicted amino acid t 95.7 0.031 6.7E-07 46.9 6.1 155 19-174 128-302 (319)
69 COG1914 MntH Mn2+ and Fe2+ tra 95.6 2.1 4.6E-05 40.7 22.4 300 20-331 76-406 (416)
70 COG0591 PutP Na+/proline sympo 95.4 2.9 6.2E-05 41.0 20.0 51 17-67 101-152 (493)
71 TIGR02711 symport_actP cation/ 95.2 3.8 8.3E-05 40.7 21.9 86 15-112 124-210 (549)
72 PRK09395 actP acetate permease 95.0 4.4 9.5E-05 40.3 21.4 89 13-113 124-213 (551)
73 PRK15419 proline:sodium sympor 94.7 4.9 0.00011 39.5 19.9 86 18-115 105-193 (502)
74 PF01566 Nramp: Natural resist 94.5 3.3 7.1E-05 38.7 16.7 86 19-116 40-127 (358)
75 TIGR02121 Na_Pro_sym sodium/pr 93.7 7.6 0.00016 38.0 20.0 86 18-115 101-189 (487)
76 TIGR03648 Na_symport_lg probab 90.5 20 0.00043 35.7 21.6 88 14-113 88-176 (552)
77 TIGR01197 nramp NRAMP (natural 87.8 25 0.00054 33.3 20.2 100 10-121 53-154 (390)
78 PRK10484 putative transporter; 87.4 32 0.00069 34.0 18.2 94 17-116 97-195 (523)
79 COG1953 FUI1 Cytosine/uracil/t 86.6 33 0.00071 33.4 16.1 142 161-307 257-414 (497)
80 PF05525 Branch_AA_trans: Bran 85.9 23 0.0005 33.9 13.2 120 179-305 226-353 (427)
81 PF00209 SNF: Sodium:neurotran 85.2 13 0.00028 36.8 11.8 101 94-194 191-299 (523)
82 TIGR00796 livcs branched-chain 82.0 4.2 9.1E-05 38.3 6.6 49 19-67 253-301 (378)
83 COG4147 DhlC Predicted symport 80.2 59 0.0013 31.5 19.5 176 15-202 98-294 (529)
84 PF02554 CstA: Carbon starvati 78.9 13 0.00029 34.6 8.5 90 19-120 112-201 (376)
85 KOG1291 Mn2+ and Fe2+ transpor 78.9 64 0.0014 31.1 15.2 133 20-163 88-225 (503)
86 KOG1288 Amino acid transporter 78.2 54 0.0012 33.4 12.7 55 145-199 294-349 (945)
87 PF05525 Branch_AA_trans: Bran 77.8 7.5 0.00016 37.2 6.8 49 19-67 259-307 (427)
88 COG0733 Na+-dependent transpor 74.4 84 0.0018 30.2 18.3 48 136-183 205-253 (439)
89 TIGR00945 tatC Twin arginine t 73.3 32 0.00069 29.6 9.0 42 217-258 54-95 (215)
90 COG1114 BrnQ Branched-chain am 69.5 17 0.00036 34.4 6.7 66 19-95 261-326 (431)
91 CHL00182 tatC Sec-independent 68.7 58 0.0012 28.8 9.8 40 218-257 76-115 (249)
92 PRK15433 branched-chain amino 66.4 94 0.002 30.0 11.2 149 146-305 195-356 (439)
93 PLN02680 carbon-monoxide oxyge 66.3 88 0.0019 27.3 10.1 73 168-243 69-143 (232)
94 TIGR01912 TatC-Arch Twin argin 61.7 99 0.0021 27.1 9.8 42 217-258 62-103 (237)
95 PRK10921 twin-arginine protein 60.5 67 0.0014 28.5 8.6 90 218-307 66-181 (258)
96 KOG2082 K+/Cl- cotransporter K 56.3 2.5E+02 0.0055 29.2 13.1 157 167-327 432-616 (1075)
97 PRK15433 branched-chain amino 56.0 35 0.00077 32.8 6.5 65 23-99 267-331 (439)
98 PF05805 L6_membrane: L6 membr 51.8 44 0.00096 28.2 5.6 62 281-342 46-117 (195)
99 PRK09598 lipid A phosphoethano 49.6 88 0.0019 31.0 8.3 27 290-316 126-152 (522)
100 PRK13183 psbN photosystem II r 45.4 26 0.00056 21.9 2.5 29 178-206 5-33 (46)
101 KOG2083 Na+/K+ symporter [Inor 45.4 59 0.0013 32.4 6.2 158 28-197 102-276 (643)
102 COG0534 NorM Na+-driven multid 43.7 2.6E+02 0.0056 27.0 10.5 129 171-305 86-217 (455)
103 PRK04949 putative sulfate tran 42.8 2E+02 0.0043 25.5 8.7 43 174-217 23-65 (251)
104 cd03495 SQR_TypeC_SdhD_like Su 42.4 1.1E+02 0.0024 22.7 6.1 47 224-270 44-90 (100)
105 PRK15015 carbon starvation pro 39.8 1.8E+02 0.004 29.6 8.6 44 19-62 143-186 (701)
106 PF02468 PsbN: Photosystem II 39.7 35 0.00075 21.1 2.4 27 180-206 4-30 (43)
107 CHL00020 psbN photosystem II p 39.1 28 0.00062 21.4 1.9 27 180-206 4-30 (43)
108 KOG4812 Golgi-associated prote 37.4 25 0.00054 30.5 2.1 71 264-338 162-246 (262)
109 PF00902 TatC: Sec-independent 34.6 2.9E+02 0.0063 23.5 9.9 91 217-307 58-175 (215)
110 PRK10921 twin-arginine protein 33.7 2.5E+02 0.0054 24.9 7.9 57 218-276 153-209 (258)
111 PF07954 DUF1689: Protein of u 31.0 1E+02 0.0023 24.9 4.6 56 284-342 34-93 (152)
112 PRK00187 multidrug efflux prot 29.4 3.7E+02 0.0079 25.9 9.1 23 282-304 417-439 (464)
113 PRK12768 CysZ-like protein; Re 29.3 3E+02 0.0066 24.1 7.6 26 170-196 11-36 (240)
114 PRK11598 putative metal depend 28.9 3E+02 0.0064 27.5 8.3 15 293-307 129-143 (545)
115 cd08764 Cyt_b561_CG1275_like N 28.8 2.6E+02 0.0057 24.0 6.9 69 175-243 54-123 (214)
116 cd08766 Cyt_b561_ACYB-1_like P 28.7 2.3E+02 0.0049 22.7 6.2 70 171-243 33-104 (144)
117 PLN02810 carbon-monoxide oxyge 28.0 2.7E+02 0.0058 24.3 6.8 73 169-244 70-144 (231)
118 COG0534 NorM Na+-driven multid 28.0 5.1E+02 0.011 25.0 9.7 126 173-307 312-441 (455)
119 PLN02351 cytochromes b561 fami 27.9 2.2E+02 0.0047 25.0 6.3 73 168-244 73-147 (242)
120 PRK01766 multidrug efflux prot 27.6 3.8E+02 0.0083 25.6 8.9 25 282-306 415-439 (456)
121 PF08019 DUF1705: Domain of un 27.1 3.3E+02 0.0072 21.8 7.2 25 288-312 69-93 (156)
122 TIGR00797 matE putative efflux 25.9 4.9E+02 0.011 23.4 12.0 21 282-302 170-190 (342)
123 PHA02680 ORF090 IMV phosphoryl 25.3 1.4E+02 0.0029 21.6 3.8 54 150-205 16-71 (91)
124 COG2142 SdhD Succinate dehydro 24.3 3.3E+02 0.0073 20.9 6.7 42 225-266 59-100 (117)
125 COG1966 CstA Carbon starvation 24.1 7.3E+02 0.016 24.8 10.0 44 19-62 112-155 (575)
126 cd08765 Cyt_b561_CYBRD1 Verteb 24.0 3.1E+02 0.0066 22.2 6.2 67 174-243 43-111 (153)
127 COG5052 YOP1 Protein involved 24.0 4.3E+02 0.0092 22.0 9.6 94 237-340 18-113 (186)
128 PHA03048 IMV membrane protein; 22.6 1.5E+02 0.0033 21.4 3.6 62 147-210 13-74 (93)
129 cd08762 Cyt_b561_CYBASC3 Verte 22.6 1.5E+02 0.0032 24.7 4.2 68 174-243 66-134 (179)
130 PF00902 TatC: Sec-independent 22.6 2.7E+02 0.0059 23.7 6.1 57 218-276 147-203 (215)
131 PF09716 ETRAMP: Malarial earl 22.1 71 0.0015 22.9 2.0 38 167-204 42-79 (84)
132 PF04835 Pox_A9: A9 protein co 20.5 2.3E+02 0.0049 18.4 3.7 34 174-208 19-52 (54)
133 PRK11560 phosphoethanolamine t 20.4 8E+02 0.017 24.6 9.5 21 288-308 124-144 (558)
134 PRK11403 hypothetical protein; 20.2 3.7E+02 0.008 20.4 5.4 56 281-336 29-85 (113)
No 1
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-54 Score=394.16 Aligned_cols=332 Identities=34% Similarity=0.536 Sum_probs=302.6
Q ss_pred CeeeecchhhhhhhcCCCCcCChhhhhHHh----------hccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccC
Q 019141 1 MMLLVHTRRKLETIHGFSKINSFGDLGYTV----------CGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNST 70 (345)
Q Consensus 1 ~~~L~~c~~~~~~~~~~~~~~~y~~l~~~~----------~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~ 70 (345)
||+|++|.+++..+.+++ ..+|+|.++.+ +|+++|.+++..+.++++|.|++|+++++++++++.+...
T Consensus 95 ~~~LVk~~~~L~~~~~~~-~~~y~~~~~~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~ 173 (449)
T KOG1304|consen 95 MHLLVKCSHKLCKRFRGP-SLDYAETAESAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHS 173 (449)
T ss_pred hHHHHHHHHHHHHhcCCc-cccHHHHHHHHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccC
Confidence 799999999998876544 47888888776 5788999999999999999999999999999999999544
Q ss_pred CcccccccccchhHHHHHHHHHHHhhcccCCCCchhhHHHHHHHHHHHHhhheeeeecccccccCCccccccCcchhhHH
Q 019141 71 TSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYG 150 (345)
Q Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (345)
.. ..+.+.++++..++.+|++++|++|+|+.+|.++.++++..+++++++...+.. +.++.+.++++.+++..
T Consensus 174 ~~------~~s~~~~i~~~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~-~~~~~~~~~~~~~~~lf 246 (449)
T KOG1304|consen 174 PG------VLSVRLYILIQLPPLLLLNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLP-PTSDLPAVTGWSGLPLF 246 (449)
T ss_pred CC------CccHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccC-CccccccccchhhhHHH
Confidence 33 267788988889999999999999999999999999999999999988877655 55677778789999999
Q ss_pred Hhhhhhhhcceeeeccchhhcccchhhh---hhHHHHHHHHHHHHHHHhhhhhheecCccccceecccCCchHHHHHHHH
Q 019141 151 IGVAVYAFEGVGMILPLESETRNKQRFG---RILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVG 227 (345)
Q Consensus 151 ~~~~~faf~~~~~~~~i~~~m~~p~~~~---~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~~~i~~n~~~~~~~~~~~~~ 227 (345)
+|+.+|||+|+.++.|++++||+||+|+ +++..++.++.++|..+|++||++|||++++.+++|+|++++.+.+|++
T Consensus 247 ~GtaifafEGig~VLPlEn~Mk~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~~~l~~~Vkl~ 326 (449)
T KOG1304|consen 247 FGTAIFAFEGIGMVLPLENSMKKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQEILSQTVKLL 326 (449)
T ss_pred HHHHHHHhccceEEEehhhcccChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCccHHHHHHHHH
Confidence 9999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccchhhHHHHHHhhhcc----cc---cchHHHHHHHHHHHHHHhhcCCccchhhhcchhhHHHHHHHHHHH
Q 019141 228 LCVNLFLTFPLMMNPVYEVVERRFCD----YR---YCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPAL 300 (345)
Q Consensus 228 ~~i~~~~s~pl~~~p~~~~l~~~~~~----~~---~~~~~r~~~v~~~~~vA~~vp~~~~i~~l~Ga~~~~~l~filP~l 300 (345)
++++++++||+|++|..+++|+.+++ +| ...+.|..+++.+..+|..+|+++.+++++||++++.+++++|++
T Consensus 327 ~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~l 406 (449)
T KOG1304|consen 327 LAIAIFLTYPLQFYVPIEIIEPGIRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPL 406 (449)
T ss_pred HHHHHHHcCchhhhhhHHHHHHhHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHH
Confidence 99999999999999999999997743 23 224599999999999999999999999999999999999999999
Q ss_pred HHHHHhccc---CChhhHhhhhhhhhhhHHHHHHHHHHHHHHh
Q 019141 301 FHLIVFKQE---LGWNGIVMDAALLVFGVVIGISGTWSSLMEI 340 (345)
Q Consensus 301 ~~~~~~~~~---~~~~~~~~~~~~i~~g~~~~v~g~~~si~~i 340 (345)
++++.++++ +.+|+++.+.+++++|+++++.|||++++++
T Consensus 407 iel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 407 IELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 999998854 3478899999999999999999999999875
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=1.5e-49 Score=381.02 Aligned_cols=325 Identities=18% Similarity=0.228 Sum_probs=264.8
Q ss_pred CCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHHhhc
Q 019141 18 SKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLN 97 (345)
Q Consensus 18 ~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~ 97 (345)
++.++|+|++++++||++++++++.+.++++|.|++|+++.+|+++++++....++..+....+|..+..+.+++.+|++
T Consensus 118 ~~~~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs 197 (467)
T PTZ00206 118 TNIRTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLV 197 (467)
T ss_pred CCCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcc
Confidence 35679999999999999999999999999999999999999999999887533221111111223333344556679999
Q ss_pred ccCCCCchhhHHHHHHHHHHHHhhheeeeecccccc-----------cCCccccccCcchhhHHHhhhhhhhcceeeecc
Q 019141 98 SIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMK-----------QRPALKAFGDFSVFSYGIGVAVYAFEGVGMILP 166 (345)
Q Consensus 98 ~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~ 166 (345)
++|++++|+++|.+++.++++.++.++++...+..+ +.++++.++...+.+.++|+++|||.||.++|+
T Consensus 198 ~~r~i~~L~~~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~ 277 (467)
T PTZ00206 198 IPRHIDSLRYVSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYE 277 (467)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHH
Confidence 999999999999999999888777666544322111 112233343344688999999999999999999
Q ss_pred chhhccc--chhhhhhHHHHHHHHHHHHHHHhhhhhheecCccccceecccC-C-chHHHHHHHHHHHHHHhhcccchhh
Q 019141 167 LESETRN--KQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFG-A-GLVSTLVNVGLCVNLFLTFPLMMNP 242 (345)
Q Consensus 167 i~~~m~~--p~~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~~~i~~n~~-~-~~~~~~~~~~~~i~~~~s~pl~~~p 242 (345)
+++|||| |+|+.+++..++.+++++|..+|++||++||+++++++++|++ . +....+++++..+.+.++||++.+|
T Consensus 278 i~~~M~~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p 357 (467)
T PTZ00206 278 VYMDMTNRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMA 357 (467)
T ss_pred HHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhh
Confidence 9999998 6789999999999999999999999999999999999999994 3 5778888999999999999999999
Q ss_pred HHHHHHhhhccc--ccch----HHHHHHHHHHHHHHhhcCCccchhhhcchhhHHHHHHHHHHHHHHHH---hcccCChh
Q 019141 243 VYEVVERRFCDY--RYCL----WLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIV---FKQELGWN 313 (345)
Q Consensus 243 ~~~~l~~~~~~~--~~~~----~~r~~~v~~~~~vA~~vp~~~~i~~l~Ga~~~~~l~filP~l~~~~~---~~~~~~~~ 313 (345)
+|+.+++.+..+ +.+. ..+..+++.+.++|+++|+++.+++++||++++.++|++|+++|++. ++++.+++
T Consensus 358 ~r~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~ 437 (467)
T PTZ00206 358 CRNALYDVIGWDARKVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPF 437 (467)
T ss_pred HHHHHHHHhCCCcccCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchH
Confidence 999999887322 2222 24455666778899999999999999999999999999999999984 23444556
Q ss_pred hHhhhhhhhhhhHHHHHHHHHHHHHHhhc
Q 019141 314 GIVMDAALLVFGVVIGISGTWSSLMEIVA 342 (345)
Q Consensus 314 ~~~~~~~~i~~g~~~~v~g~~~si~~ii~ 342 (345)
+...++.++++|++..+.|||+++++.+.
T Consensus 438 ~~~~~~~lli~Gv~~~v~Gt~~si~~~~~ 466 (467)
T PTZ00206 438 YYISTYVVLITGVIAIVFGTGATIWGVTV 466 (467)
T ss_pred HHHHHHHHHHHHhheEEecchhHhhHHhc
Confidence 67889999999999999999999999863
No 3
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=9.4e-44 Score=332.42 Aligned_cols=336 Identities=22% Similarity=0.366 Sum_probs=282.3
Q ss_pred eeecchhhhhhhcCCCCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccch
Q 019141 3 LLVHTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPK 82 (345)
Q Consensus 3 ~L~~c~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~ 82 (345)
+|.+|++..+...++ +.++|.|+|+++||+++++++.+++.+.++|.+++|++..+|++..+.+....+.. ..+.
T Consensus 88 LL~~~~~~~~~~~~~-r~~~Y~dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~----~l~~ 162 (437)
T KOG1303|consen 88 LLSRCWEMHEAVPGK-RRYRYPDLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN----SLDK 162 (437)
T ss_pred HHHHHHHhccCCCCc-cCCChHHHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc----cccc
Confidence 567888887765432 45899999999999999999999999999999999999999999999998766531 1335
Q ss_pred hHHHHHHHHHHHhhcccCCCCchhhHHHHHHHHHHHHhhheeeeeccccccc-C--CccccccCcchhhHHHhhhhhhhc
Q 019141 83 ALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQ-R--PALKAFGDFSVFSYGIGVAVYAFE 159 (345)
Q Consensus 83 ~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~faf~ 159 (345)
+.+++++.++.+|++++|+++.+++.|..+.+..+....+.+..+..+..+. . .+.+..++....++++|++.|+|+
T Consensus 163 ~~f~iif~~i~~~~s~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~ 242 (437)
T KOG1303|consen 163 QYFIIIFGLIVLPLSQLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYG 242 (437)
T ss_pred eehhhhHHHHHHHHHHCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeec
Confidence 6777888889999999999999999999998877655555544443332211 1 122212122112799999999999
Q ss_pred ceeeeccchhhcccchhhhhhHHHHHHHHHHHHHHHhhhhhheecCccccceecccC-CchHHHHHHHHHHHHHHhhccc
Q 019141 160 GVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFG-AGLVSTLVNVGLCVNLFLTFPL 238 (345)
Q Consensus 160 ~~~~~~~i~~~m~~p~~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~~~i~~n~~-~~~~~~~~~~~~~i~~~~s~pl 238 (345)
+|+.+|++|++||+|++|+|++.+++.+++.+|+.+++.||++|||+++|+++.|++ +.|+...+++++.+|++.++..
T Consensus 243 gH~v~peIq~tMk~p~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i 322 (437)
T KOG1303|consen 243 GHAVLPEIQHTMKSPPKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQI 322 (437)
T ss_pred CCeeeeehHhhcCCchhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999996 7899999999999999999999
Q ss_pred chhhHHHHHHhhhcccc---------cchHHHHHHHHHHHHHHhhcCCccchhhhcchhhHHHHHHHHHHHHHHHHhccc
Q 019141 239 MMNPVYEVVERRFCDYR---------YCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQE 309 (345)
Q Consensus 239 ~~~p~~~~l~~~~~~~~---------~~~~~r~~~v~~~~~vA~~vp~~~~i~~l~Ga~~~~~l~filP~l~~~~~~~~~ 309 (345)
...|..+.+|+....++ .|...|+.+++.+.++|+.+|+|+++++++||+...++++++|+++|++.+|.+
T Consensus 323 ~a~pl~~~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~ 402 (437)
T KOG1303|consen 323 YAQPLFDVVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPK 402 (437)
T ss_pred hhcchHHHHHHHhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999996432 344589999999999999999999999999999999999999999999998755
Q ss_pred CChhhHhhhhhh-hhhhHHHHHHHHHHHHHHhhcC
Q 019141 310 LGWNGIVMDAAL-LVFGVVIGISGTWSSLMEIVAP 343 (345)
Q Consensus 310 ~~~~~~~~~~~~-i~~g~~~~v~g~~~si~~ii~~ 343 (345)
+...+...++.+ .++|++.++....+++++++.+
T Consensus 403 ~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 403 RFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred hhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 444445566666 7889999999999998887753
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=9e-46 Score=351.81 Aligned_cols=329 Identities=28% Similarity=0.463 Sum_probs=277.1
Q ss_pred CeeeecchhhhhhhcCCCCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCccccccccc
Q 019141 1 MMLLVHTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLS 80 (345)
Q Consensus 1 ~~~L~~c~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~ 80 (345)
+++|.+|+++.+ ++++..+|+|++++++|+++++++++++.++++|.+++|++..+|.+.++.+...++ ...
T Consensus 51 ~~~l~~~~~~~~---~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-----~~~ 122 (409)
T PF01490_consen 51 MYLLVRAANAMP---NGTGRRSYGDLARRAFGPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD-----LFI 122 (409)
T ss_pred hhhhhccccccc---cccccccccccccccccccccccccchheeccccccceeEEEeeeeeeccccccccc-----ccc
Confidence 367888887765 245789999999999999999999999999999999999999999999998875443 124
Q ss_pred chhHHHHHHHHHHHhhcccCCCCchhhHHHHHHHHHHHHhhheeeeecccc---cccC--CccccccCcchhhHHHhhhh
Q 019141 81 PKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMIS---MKQR--PALKAFGDFSVFSYGIGVAV 155 (345)
Q Consensus 81 ~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (345)
++..+.++..++.+|++++|+++++++.|.++.+++++.+..+.+...... .++. ++.....++.+++.++|+++
T Consensus 123 ~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 202 (409)
T PF01490_consen 123 SRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIII 202 (409)
T ss_pred cccccccccccccccccccchhhHHHHHhhhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhh
Confidence 556666677778899999999999999999999998874332222222211 1111 11112235678999999999
Q ss_pred hhhcceeeeccchhhcccchhhh---hhHHHHHHHHHHHHHHHhhhhhheecCccccceecccCCc-hHHHHHHHHHHHH
Q 019141 156 YAFEGVGMILPLESETRNKQRFG---RILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAG-LVSTLVNVGLCVN 231 (345)
Q Consensus 156 faf~~~~~~~~i~~~m~~p~~~~---~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~~~i~~n~~~~-~~~~~~~~~~~i~ 231 (345)
|||.||+++|++++|||+|+|++ |+...+..+++++|..+|..||++||+++++|++.|++++ +...++++++.++
T Consensus 203 faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~ 282 (409)
T PF01490_consen 203 FAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVIS 282 (409)
T ss_pred hhhhcccccceeeeeccCCccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhh
Confidence 99999999999999999998877 9999999999999999999999999999999999999987 6999999999999
Q ss_pred HHhhcccchhhHHHHHHhhhccc-----------c----cchHHHHHHHHHHHHHHhhcCCccchhhhcchhhHHHHHHH
Q 019141 232 LFLTFPLMMNPVYEVVERRFCDY-----------R----YCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFV 296 (345)
Q Consensus 232 ~~~s~pl~~~p~~~~l~~~~~~~-----------~----~~~~~r~~~v~~~~~vA~~vp~~~~i~~l~Ga~~~~~l~fi 296 (345)
++.++|++.+|.++.+++.+.++ + ++...|..+++.+.++|+.+|+++++++++||++++.++|+
T Consensus 283 ~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi 362 (409)
T PF01490_consen 283 LLLSYPLQLFPARNSLENLLFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFI 362 (409)
T ss_pred hhhccccccchhHhhhhhheeccccccccccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHH
Confidence 99999999999999999999642 1 12338899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCChhh-----HhhhhhhhhhhHHHHHHHHHHHH
Q 019141 297 LPALFHLIVFKQELGWNG-----IVMDAALLVFGVVIGISGTWSSL 337 (345)
Q Consensus 297 lP~l~~~~~~~~~~~~~~-----~~~~~~~i~~g~~~~v~g~~~si 337 (345)
+|+++|+|.+++++++++ ...++.++++|++.++.|+|+++
T Consensus 363 ~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 363 LPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred HHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 999999999886543222 25578999999999999999986
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=1.9e-42 Score=330.54 Aligned_cols=333 Identities=17% Similarity=0.146 Sum_probs=263.0
Q ss_pred eeeecchhhhhhhcCCCC------cCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccc
Q 019141 2 MLLVHTRRKLETIHGFSK------INSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTI 75 (345)
Q Consensus 2 ~~L~~c~~~~~~~~~~~~------~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~ 75 (345)
++|.+|+++...+.++++ ..+|+|+++..+||+++.+..+...+++++.|+.|++..++++..+-. .
T Consensus 95 ~lL~~~~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~----~--- 167 (473)
T PLN03074 95 YLISVLYVEYRARKEREKVDFKNHVIQWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIND----N--- 167 (473)
T ss_pred HHHHHHHHHHHhccCcCCCchhHHHHHHHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCC----C---
Confidence 455666555443322211 137899999999999999999999999999999999998887765521 1
Q ss_pred cccccchhHHHHHHHHHHHhhcccCCCCchhhHHHHHHHHHHHHhhheeeeecccccccCCccccccCcchhhHHHhhhh
Q 019141 76 LGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAV 155 (345)
Q Consensus 76 ~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (345)
.+++.++.++..+.+|++++|++++++++|.+|..++++....+++....+..++..+.....+...++.++++++
T Consensus 168 ----~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~~i~ 243 (473)
T PLN03074 168 ----LDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGATNIL 243 (473)
T ss_pred ----cCCCeEEeehHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHH
Confidence 3345555666667788999999999999999999876654444433332222211111111124556778888999
Q ss_pred hhhcceeeeccchhhcccchhhhhhHHHHHHHHHHHHHHHhhhhhheecCcccc--ceecccCCchHHHHHHHHHHHHHH
Q 019141 156 YAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKD--IITTNFGAGLVSTLVNVGLCVNLF 233 (345)
Q Consensus 156 faf~~~~~~~~i~~~m~~p~~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~~--~i~~n~~~~~~~~~~~~~~~i~~~ 233 (345)
|+|++|..+|++++|||||+||+++...+....+..|..+|+.||+.|||++++ +.++|+|++.+..++++.+.++++
T Consensus 244 faf~g~~v~~~I~~~M~~P~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~~~~~~~~~~i~~~ 323 (473)
T PLN03074 244 YTFGGHAVTVEIMHAMWKPQKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGWRDAAVILMLIHQF 323 (473)
T ss_pred HHhcccccHHHHHHhccChhcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998764 567779877678899999999999
Q ss_pred hhcccchhhHHHHHHhhhcccc-----cchHHHHHHHHHHHHHHhhcCCccchhhhcchhhHHHHHHHHHHHHHHHHhcc
Q 019141 234 LTFPLMMNPVYEVVERRFCDYR-----YCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQ 308 (345)
Q Consensus 234 ~s~pl~~~p~~~~l~~~~~~~~-----~~~~~r~~~v~~~~~vA~~vp~~~~i~~l~Ga~~~~~l~filP~l~~~~~~~~ 308 (345)
.+||++..|..+.+|+..+.+. .+...|+.+++.++++|+.+|+|+.+++++||++++.+++++|+++|++.+++
T Consensus 324 ~sy~l~~~p~~~~~e~~~~~~~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~ 403 (473)
T PLN03074 324 ITFGFACTPLYFVWEKAIGVHDTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRS 403 (473)
T ss_pred HHHHHHHhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999875432 12348999999999999999999999999999999999999999999986543
Q ss_pred c-------------CChh--hHhhhhhhhhh-hHHHHHHHHHHHHHHhhcCCC
Q 019141 309 E-------------LGWN--GIVMDAALLVF-GVVIGISGTWSSLMEIVAPKA 345 (345)
Q Consensus 309 ~-------------~~~~--~~~~~~~~i~~-g~~~~v~g~~~si~~ii~~~~ 345 (345)
+ .++| ..+.|++++++ |++..+.|+|+|+++++++.+
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~ 456 (473)
T PLN03074 404 ASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQID 456 (473)
T ss_pred hhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhh
Confidence 2 2223 45789999985 666679999999999998753
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-39 Score=303.66 Aligned_cols=324 Identities=21% Similarity=0.345 Sum_probs=272.1
Q ss_pred CcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhH-HHHHHHHHHHhhc
Q 019141 19 KINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKAL-YIWGCFPFQLGLN 97 (345)
Q Consensus 19 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~pl~ 97 (345)
+.++|+++++..+|+.++...++.......| +++|+++++|.++.+.+.....+..+.++.+|.. ++.....+++|++
T Consensus 65 ~~~ty~~l~~~~~g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLs 143 (411)
T KOG1305|consen 65 GERTYSSLGDLIFGKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLS 143 (411)
T ss_pred CCCCHHHHHHHHcCCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHH
Confidence 4459999999999999988888888888888 8999999999999776654333211111334444 5566677789999
Q ss_pred ccCCCCchhhHHHHHHHHHHHHhhheeeeeccccc--cc-CCccccccCcchhhHHHhhhhhhhcceeeeccchhhcccc
Q 019141 98 SIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISM--KQ-RPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNK 174 (345)
Q Consensus 98 ~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p 174 (345)
+.|+++++++.|.++..++++.+.+++++...... +. ..+.+.-..+++++.++|++.|||.||+++.++++|||+|
T Consensus 144 l~k~l~~Lk~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~ 223 (411)
T KOG1305|consen 144 LLKNLDSLKYTSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDR 223 (411)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCc
Confidence 99999999999999999999999888876555322 11 1111111122579999999999999999999999999997
Q ss_pred --hhhhhhHHHHHHHHHHHHHHHhhhhhheecCccccceecccCCch-------HHHHHHHHHHHHHHhhcccchhhHHH
Q 019141 175 --QRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGL-------VSTLVNVGLCVNLFLTFPLMMNPVYE 245 (345)
Q Consensus 175 --~~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~~~i~~n~~~~~-------~~~~~~~~~~i~~~~s~pl~~~p~~~ 245 (345)
+|++++...+...+.++|..+|.+||+.|||++++|++.+++.+. ....++..+.++++.++|++.+|+|.
T Consensus 224 s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~ 303 (411)
T KOG1305|consen 224 SVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRM 303 (411)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 569999999999999999999999999999999999999998642 24789999999999999999999999
Q ss_pred HHHhhhcccc---------cchHHHHHHHHHHHHHHhhcCCccchhhhcchhhHHHHHHHHHHHHHHHHhcccCChhhHh
Q 019141 246 VVERRFCDYR---------YCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQELGWNGIV 316 (345)
Q Consensus 246 ~l~~~~~~~~---------~~~~~r~~~v~~~~~vA~~vp~~~~i~~l~Ga~~~~~l~filP~l~~~~~~~~~~~~~~~~ 316 (345)
.+++.+.+++ ++.+++..++..+.+.|+.+|+++.+++++||++++.++|++|+++|++.+|+ +.+++.
T Consensus 304 ~l~~~~~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~ 381 (411)
T KOG1305|consen 304 NLDELLFPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPL 381 (411)
T ss_pred HHHHHhcccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccch
Confidence 9988885432 33457778888899999999999999999999999999999999999999887 777889
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhcCCC
Q 019141 317 MDAALLVFGVVIGISGTWSSLMEIVAPKA 345 (345)
Q Consensus 317 ~~~~~i~~g~~~~v~g~~~si~~ii~~~~ 345 (345)
..+...++++.....|++..+.|+..+.+
T Consensus 382 ~~~~~~~~~~~~~i~~~~~~i~~~~~~~~ 410 (411)
T KOG1305|consen 382 GALIFLILGVLLSIIGVAVMIYDLLAKNA 410 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999987653
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=6.3e-38 Score=273.36 Aligned_cols=331 Identities=24% Similarity=0.350 Sum_probs=288.3
Q ss_pred eeecchhhhhhhcC-CCCcCChhhhhHHhhccc-hhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCccccccccc
Q 019141 3 LLVHTRRKLETIHG-FSKINSFGDLGYTVCGSV-GRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLS 80 (345)
Q Consensus 3 ~L~~c~~~~~~~~~-~~~~~~y~~l~~~~~G~~-~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~ 80 (345)
+|++|..+.++... -..+++|-+++..+++++ |...+.+.+.+.+..+|+.|.+..||.+.+.++..+.
T Consensus 166 ~Li~CLYE~~~dGevVrvRdsYvaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~sv--------- 236 (524)
T KOG4303|consen 166 LLIECLYENGEDGEVVRVRDSYVAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSV--------- 236 (524)
T ss_pred hhhhhhccCCCCCcEEEeehhHHHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCc---------
Confidence 57788777664211 125789999999999886 5577999999999999999999999999888876433
Q ss_pred chhHHHHHHHHHHHhhcccCCCCchhhHHHHHHHHHHHHhhheeeeeccccccc-CCccccccCcchhhHHHhhhhhhhc
Q 019141 81 PKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQ-RPALKAFGDFSVFSYGIGVAVYAFE 159 (345)
Q Consensus 81 ~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~faf~ 159 (345)
+++-|+.+.....+|.++.|++|..+.+|.++.++-++.-.+++.++.....+. +++++...+..+++..+|++.|+|.
T Consensus 237 d~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYT 316 (524)
T KOG4303|consen 237 DKASWMMITSASLLPCSFLKDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYT 316 (524)
T ss_pred cccchhhhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeee
Confidence 346677777888899999999999999999999888877777777776643321 2334333477789999999999999
Q ss_pred ceeeeccchhhcccchhhhhhHHHHHHHHHHHHHHHhhhhhheecCccccceecccCCchHHHHHHHHHHHHHHhhcccc
Q 019141 160 GVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTFPLM 239 (345)
Q Consensus 160 ~~~~~~~i~~~m~~p~~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~~~i~~n~~~~~~~~~~~~~~~i~~~~s~pl~ 239 (345)
-|.-.|+++.+|++|.+|...+.++-+...++-..+|..||++||+.|+..|++|+|+.-+..++++...+.-+.|||+-
T Consensus 317 SqIFLP~LEGNM~~ps~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~qsfk~~VN~fLV~KALLSYPLP 396 (524)
T KOG4303|consen 317 SQIFLPNLEGNMKNPSQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQSFKILVNLFLVVKALLSYPLP 396 (524)
T ss_pred ceeeccccccccCChhHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCccchhhhhhHHHHHHHHHcCCch
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred hhhHHHHHHhhhccc--------------ccchH---HHHHHHHHHHHHHhhcCCccchhhhcchhhHHHHHHHHHHHHH
Q 019141 240 MNPVYEVVERRFCDY--------------RYCLW---LRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFH 302 (345)
Q Consensus 240 ~~p~~~~l~~~~~~~--------------~~~~~---~r~~~v~~~~~vA~~vp~~~~i~~l~Ga~~~~~l~filP~l~~ 302 (345)
.+...+.+|+-+... +.+.| +|.++++++.++|+.+|.+..+++++|++.++.++|++|+++|
T Consensus 397 fyAAvelLe~nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFH 476 (524)
T KOG4303|consen 397 FYAAVELLENNLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFH 476 (524)
T ss_pred HHHHHHHHHHhhhcCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHH
Confidence 999999999988531 23344 8999999999999999999999999999999999999999999
Q ss_pred HHHhcccCChhhHhhhhhhhhhhHHHHHHHHHHHHHHhhc
Q 019141 303 LIVFKQELGWNGIVMDAALLVFGVVIGISGTWSSLMEIVA 342 (345)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~i~~g~~~~v~g~~~si~~ii~ 342 (345)
+++++++..+.++.....++++|..+++.|.|-|..++++
T Consensus 477 l~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~ 516 (524)
T KOG4303|consen 477 LYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIR 516 (524)
T ss_pred HHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHH
Confidence 9999888888899999999999999999999999888875
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.92 E-value=1.4e-24 Score=205.00 Aligned_cols=310 Identities=16% Similarity=0.099 Sum_probs=230.0
Q ss_pred CChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHHhhcccC
Q 019141 21 NSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIP 100 (345)
Q Consensus 21 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~ 100 (345)
.++.|++++.+||+++++.+....+.+|+.+++|.+..+|.+++.+++....+ + .+|.....++..+..++++.+
T Consensus 72 ~~~~~~~~~~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~---~--~~r~~~~lif~~~~~~l~~~~ 146 (415)
T COG0814 72 ASITSLVEDYLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLN---P--LPRKLGSLIFALVLAFLSWLG 146 (415)
T ss_pred ccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccC---C--cchHHHHHHHHHHHHHHHHhc
Confidence 49999999999999999999999999999999999999999999998743331 1 456666667777778899999
Q ss_pred CCCchhhHHHHHHHHHHHHhhheeeeecccccccC----CccccccCcchhhHHHhhhhhhhcceeeeccchhhcccc-h
Q 019141 101 TLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQR----PALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNK-Q 175 (345)
Q Consensus 101 ~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~ 175 (345)
+...++..|.+....+.+.++.+.+..... .++. ++.. ..++.++..++|++.|||+||+++|++++|||++ +
T Consensus 147 ~~~~lk~ts~l~~~~v~~~~~l~~~~~~~~-~~~~l~~~~~~~-~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~ 224 (415)
T COG0814 147 TLAVLKITSLLVFGKVIYLVLLVVYLIPHW-NPANLFALPSAS-QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSK 224 (415)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccc-CHHHHhcccccc-hhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchh
Confidence 999999999998888877776655543331 1111 1111 1366688999999999999999999999999986 3
Q ss_pred h-hhhhHHHHHHHHHHHHHHHhhhhhheecCccccceecccCCchHH--------------HHHHHHHHHHHHhhcccch
Q 019141 176 R-FGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVS--------------TLVNVGLCVNLFLTFPLMM 240 (345)
Q Consensus 176 ~-~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~~~i~~n~~~~~~~--------------~~~~~~~~i~~~~s~pl~~ 240 (345)
| .+|+..++..+..++|..+++.+|..+|+.+.++++.+.+++... ...++...+++..||--.-
T Consensus 225 ~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~ 304 (415)
T COG0814 225 KAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVY 304 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCch
Confidence 4 999999999999999999999999999999999999999764322 2333444444444432233
Q ss_pred hhHHHHHHhhhcc--c---ccchH------HHHHHHHHHHHHHhhcCCccchhhhcchhhHHHHHHHHHHHHHHHHhccc
Q 019141 241 NPVYEVVERRFCD--Y---RYCLW------LRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQE 309 (345)
Q Consensus 241 ~p~~~~l~~~~~~--~---~~~~~------~r~~~v~~~~~vA~~vp~~~~i~~l~Ga~~~~~l~filP~l~~~~~~~~~ 309 (345)
...++..++..++ + |...+ .....+.....++...|..+.+.+.+|+.....+.++.|...+.|....+
T Consensus 305 lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~ 384 (415)
T COG0814 305 LGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALK 384 (415)
T ss_pred hhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcee
Confidence 3334444444432 1 11122 22334445667788888888888888999999999999988887765533
Q ss_pred CChhhHhhhhhhhhhhHHHHHHHHHHHH
Q 019141 310 LGWNGIVMDAALLVFGVVIGISGTWSSL 337 (345)
Q Consensus 310 ~~~~~~~~~~~~i~~g~~~~v~g~~~si 337 (345)
....++....+++++|++.+..-.++..
T Consensus 385 ~~~g~~~~~~~v~~~Gi~~~~~~~~~~~ 412 (415)
T COG0814 385 VYGGNFLLLLLVLLFGILVILSPFLATF 412 (415)
T ss_pred ecCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 2332235788888899888887776543
No 9
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.79 E-value=3.7e-18 Score=160.88 Aligned_cols=284 Identities=11% Similarity=0.018 Sum_probs=204.3
Q ss_pred CCCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHHhh
Q 019141 17 FSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGL 96 (345)
Q Consensus 17 ~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl 96 (345)
+++..++.|.+++++||+++++..+...+.++..+++|.+..++.+.+.++...... .++.....+...+..+
T Consensus 55 ~p~~~~~~~~~~~~~G~~~g~~~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~v~~~- 127 (381)
T TIGR00837 55 YPGGASFNTIAKDLLGKTGNIIAGLSLLFVLYILTYAYISGGGSILSRLIGEYFGFP------WSARAIVLIFTVLFGS- 127 (381)
T ss_pred CCCCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCC------ccHHHHHHHHHHHHHH-
Confidence 456789999999999999999999999999999999999999999999887543321 2233333333333333
Q ss_pred cccCCCCchhhHHHHHHHHHHHHhhheeeeecccccccC-Ccccc-ccCcchhhHHHhhhhhhhcceeeeccchhhcc-c
Q 019141 97 NSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQR-PALKA-FGDFSVFSYGIGVAVYAFEGVGMILPLESETR-N 173 (345)
Q Consensus 97 ~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~-~ 173 (345)
...+..+..+.++.+.+...+..+...++...++...++ .+... ..++.++..+++...++|++|.+++++.+|++ +
T Consensus 128 l~~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~ 207 (381)
T TIGR00837 128 FVWLSTSAVDRITRVLIFGKIIAFALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGN 207 (381)
T ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccC
Confidence 344566777777777766655544433332222211111 00000 11455788999999999999999999999997 5
Q ss_pred chhhhhhHHHHHHHHHHHHHHHhhhhhheecCccc-------cc------ee-cccCCchHHHHHHHHHHHHHHhhcccc
Q 019141 174 KQRFGRILGWCMAFISLLYGSFGALGYFAFGEETK-------DI------IT-TNFGAGLVSTLVNVGLCVNLFLTFPLM 239 (345)
Q Consensus 174 p~~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~-------~~------i~-~n~~~~~~~~~~~~~~~i~~~~s~pl~ 239 (345)
+||.+|+...+..++.++|..+........+.+.- ++ .. ...++.+...++.....+++.+++.-.
T Consensus 208 ~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~ 287 (381)
T TIGR00837 208 VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGV 287 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999887665555543211 11 11 113344567788888899999999999
Q ss_pred hhhHHHHHHhhhcccc---cchHHHHHHHHHHHHHHhhcCCcc-chhhhcchhhHHHHHHHHHHHHHHHHhcc
Q 019141 240 MNPVYEVVERRFCDYR---YCLWLRWAVVLGVSLVALLVPNFA-DFLSLVGSSVCCILGFVLPALFHLIVFKQ 308 (345)
Q Consensus 240 ~~p~~~~l~~~~~~~~---~~~~~r~~~v~~~~~vA~~vp~~~-~i~~l~Ga~~~~~l~filP~l~~~~~~~~ 308 (345)
....+|.+.+.+++++ .|.....+..+...++|.+.|+.. ..++..| ++++.+.+++|++++++.||+
T Consensus 288 ~l~~~d~l~~~~~~~~~~~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 288 TLGLFDYLADLFKFDDSKKGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred HHHHHHHHHHHhCCCcccCCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 9999999988886532 233344555567788899999865 8999999 889999999999999999875
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.76 E-value=6.8e-17 Score=151.75 Aligned_cols=285 Identities=16% Similarity=0.094 Sum_probs=197.7
Q ss_pred CCCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHHhh
Q 019141 17 FSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGL 96 (345)
Q Consensus 17 ~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl 96 (345)
.++..+|.+++++.+||+++++..+...+..|+.+++|....++.+++.++...+.+ .+++....++..+.-.+
T Consensus 61 ~~~~~~~~~~a~~~lG~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~------~~~~~~~~~f~~i~~~i 134 (394)
T PF03222_consen 61 TPEGSSLTSMAEKYLGKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTD------LSPWLSSLLFTIIFGGI 134 (394)
T ss_pred CCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCC------CcHHHHHHHHHHHHHHH
Confidence 346889999999999999999999999999999999999999999999998765321 22232222222111111
Q ss_pred cccCCCCchhhHHHHHHHHHHHHhhheeeeecccccccCC--ccccccCcchhhHHHhhhhhhhcceeeeccchhhccc-
Q 019141 97 NSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRP--ALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRN- 173 (345)
Q Consensus 97 ~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~- 173 (345)
... .-+.....+.+-+...+..+........++...+.- ..+...++...+.++|+..+||+.|+.+|++.+.+++
T Consensus 135 v~~-g~~~v~~~n~~lv~~~i~~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d 213 (394)
T PF03222_consen 135 VYF-GTKAVDRINRVLVFGMIISFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGD 213 (394)
T ss_pred HHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCcc
Confidence 111 223444444444444433333333333333221110 0111237778899999999999999999999999995
Q ss_pred chhhhhhHHHHHHHHHHHHHHHhh--hhhh---------eecCcccc--ceeccc-CCchHHHHHHHHHHHHHHhhcccc
Q 019141 174 KQRFGRILGWCMAFISLLYGSFGA--LGYF---------AFGEETKD--IITTNF-GAGLVSTLVNVGLCVNLFLTFPLM 239 (345)
Q Consensus 174 p~~~~~~~~~a~~i~~~~Y~~~g~--~gy~---------~fG~~~~~--~i~~n~-~~~~~~~~~~~~~~i~~~~s~pl~ 239 (345)
+||.+|++.++..+..++|+..-+ .|-. .-|++..+ ....+. ++.+......+...+++.+||-=.
T Consensus 214 ~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv 293 (394)
T PF03222_consen 214 PKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGV 293 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999987533 2311 11111111 122222 334667888999999999999999
Q ss_pred hhhHHHHHHhhhcccc--c-chHHHHHHHHHHHHHHhhcCC-ccchhhhcchhhHHHHHHHHHHHHHHHHhccc
Q 019141 240 MNPVYEVVERRFCDYR--Y-CLWLRWAVVLGVSLVALLVPN-FADFLSLVGSSVCCILGFVLPALFHLIVFKQE 309 (345)
Q Consensus 240 ~~p~~~~l~~~~~~~~--~-~~~~r~~~v~~~~~vA~~vp~-~~~i~~l~Ga~~~~~l~filP~l~~~~~~~~~ 309 (345)
....+|.+++.++.++ . |........+...++|...|+ |...+++.| ...+.+..++|+++.+|.||++
T Consensus 294 ~lgl~d~l~d~~k~~~~~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~ 366 (394)
T PF03222_consen 294 YLGLFDFLADLFKLKNNSSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRK 366 (394)
T ss_pred HHHHHHHHHHHHcCCccccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999997632 2 222333444567788999997 889999999 9999999999999999998744
No 11
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.74 E-value=1.3e-16 Score=149.46 Aligned_cols=306 Identities=14% Similarity=0.071 Sum_probs=207.6
Q ss_pred CCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHHhhc
Q 019141 18 SKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLN 97 (345)
Q Consensus 18 ~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~ 97 (345)
++..++.+++|+.+||+|+++..+...+..|..+.+|....|+.+++.++++.+.+ .+.....+.+.++.-..
T Consensus 62 ~~~~~~~~~a~~~LG~~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~------i~~~~~~l~F~~~~~~i- 134 (403)
T PRK15132 62 PADTGLGTLAKRYLGRYGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGIS------MSPTAGVLLFTLVAGGV- 134 (403)
T ss_pred CCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCC------CChHHHHHHHHHHHHHH-
Confidence 45678999999999999999999999999999999999999999999887644332 11122222221111111
Q ss_pred ccCCCCchhhHHHHHHHHHHHHhhheeeeecccccccCC-ccccccCcchhhHHHhhhhhhhcceeeeccchhhccc-ch
Q 019141 98 SIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRP-ALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRN-KQ 175 (345)
Q Consensus 98 ~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~-p~ 175 (345)
.....+...+...+-....+...+.......++...++- +.++ +....+.++|++.+||+.|+++|++.+.+++ +|
T Consensus 135 v~~g~~~v~~~n~~L~~~~ii~~~~~~~~l~p~~~~~~L~~~~~--~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~ 212 (403)
T PRK15132 135 VCVGTSSVDLFNRFLFSAKIIFLVVMLALMMPHIHKVNLLTLPL--QQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIR 212 (403)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhcCCc--cccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHH
Confidence 222234444444443333333333222222332222110 1111 1124889999999999999999999999986 68
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhheecCc-----ccc-----ceeccc----CCchHHHHHHHHHHHHHHhhcccchh
Q 019141 176 RFGRILGWCMAFISLLYGSFGALGYFAFGEE-----TKD-----IITTNF----GAGLVSTLVNVGLCVNLFLTFPLMMN 241 (345)
Q Consensus 176 ~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~-----~~~-----~i~~n~----~~~~~~~~~~~~~~i~~~~s~pl~~~ 241 (345)
|.+|++.++..+..++|+..=......-+.+ .++ +++..+ +..+....+.....+++.+||-=...
T Consensus 213 ~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~l 292 (403)
T PRK15132 213 KLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVAL 292 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987544433333322 111 122222 23466778888888999999999999
Q ss_pred hHHHHHHhhhccccc---chHHHHHHHHHHHHHHhhcCC-ccchhhhcchhhHHHHHHHHHHHHHHHHhccc-C-Chh--
Q 019141 242 PVYEVVERRFCDYRY---CLWLRWAVVLGVSLVALLVPN-FADFLSLVGSSVCCILGFVLPALFHLIVFKQE-L-GWN-- 313 (345)
Q Consensus 242 p~~~~l~~~~~~~~~---~~~~r~~~v~~~~~vA~~vp~-~~~i~~l~Ga~~~~~l~filP~l~~~~~~~~~-~-~~~-- 313 (345)
..+|.+.+.+++++. |.....+..+.++++|...|+ |....++.|. ..+.+.+++|+++.+|.|+++ . +++
T Consensus 293 gl~d~l~d~~~~~~~~~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~~~~~y~v~ 371 (403)
T PRK15132 293 GLFDYLADLFQRRNTVGGRLQTGLITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQNPQAGYRVK 371 (403)
T ss_pred HHHHHHHHHHccCccccCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCccCC
Confidence 999999999864332 223344566678899999997 8889999886 578899999999999998743 2 222
Q ss_pred -hHhhhhhhhhhhHHHHHHHH
Q 019141 314 -GIVMDAALLVFGVVIGISGT 333 (345)
Q Consensus 314 -~~~~~~~~i~~g~~~~v~g~ 333 (345)
.+...++++++|++..+.-.
T Consensus 372 gg~~~~~~v~~~G~~~i~~~~ 392 (403)
T PRK15132 372 GGRPALALVFLCGIAVIGIQF 392 (403)
T ss_pred CChHHHHHHHHHHHHHHHHHH
Confidence 35567777788877766544
No 12
>PRK10483 tryptophan permease; Provisional
Probab=99.72 E-value=6.7e-16 Score=144.07 Aligned_cols=307 Identities=13% Similarity=0.068 Sum_probs=204.4
Q ss_pred CCCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHHhh
Q 019141 17 FSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGL 96 (345)
Q Consensus 17 ~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl 96 (345)
.++..++.+++|+.+||+|+.+..++..+..|+.+++|....||.+++.+++. +.+ .++..-.+++.++.-..
T Consensus 69 ~~~g~~~~tma~~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~-~~~------i~~~~~~llF~~~~~~i 141 (414)
T PRK10483 69 YRIGSSFDTITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEM-SLN------VPARAAGFGFALLVAFV 141 (414)
T ss_pred CCCCCCHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc-CCC------CcHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999998762 211 22233222222222222
Q ss_pred cccCCCCchhhHHHHHHHHHHHHhhheeeeeccccccc---CCccccccCcchhhHHHhhhhhhhcceeeeccchhhccc
Q 019141 97 NSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQ---RPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRN 173 (345)
Q Consensus 97 ~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 173 (345)
... ..+...+++..-...++...+..+....++...+ +.+.....++...+.++|++.+||+.|+++|++.+.+++
T Consensus 142 v~~-gt~~vd~~n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~ 220 (414)
T PRK10483 142 VWL-STKAVSRMTAIVLGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGK 220 (414)
T ss_pred HHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCc
Confidence 222 2355555554444444333333322222221110 111111113445789999999999999999999999886
Q ss_pred -chhhhhhHHHHHHHHHHHHHHHhh--hhhhe---------ecCccccceecc----cCCchHHHHHHHHHHHHHHhhcc
Q 019141 174 -KQRFGRILGWCMAFISLLYGSFGA--LGYFA---------FGEETKDIITTN----FGAGLVSTLVNVGLCVNLFLTFP 237 (345)
Q Consensus 174 -p~~~~~~~~~a~~i~~~~Y~~~g~--~gy~~---------fG~~~~~~i~~n----~~~~~~~~~~~~~~~i~~~~s~p 237 (345)
+||.+|++.++..+..++|+.-=. .|-.. -|++.+ ..+.. .++............+++.+||-
T Consensus 221 d~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~-~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFl 299 (414)
T PRK10483 221 DPKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNID-VLVQALSGVLNSRSLDLLLVVFSNFAVASSFL 299 (414)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChH-HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999997332 22221 222221 11112 23345667888888999999999
Q ss_pred cchhhHHHHHHhhhccccc---chHHHHHHHHHHHHHHhhcCC-ccchhhhcchhhHHHHHHHHHHHHHHHHhcc-cCCh
Q 019141 238 LMMNPVYEVVERRFCDYRY---CLWLRWAVVLGVSLVALLVPN-FADFLSLVGSSVCCILGFVLPALFHLIVFKQ-ELGW 312 (345)
Q Consensus 238 l~~~p~~~~l~~~~~~~~~---~~~~r~~~v~~~~~vA~~vp~-~~~i~~l~Ga~~~~~l~filP~l~~~~~~~~-~~~~ 312 (345)
=.....+|.+++.++.++. |...-....+...++|...|+ |-..++..|.. ...+..++|+++.++.||+ +.+.
T Consensus 300 Gv~LGL~d~l~D~~k~~~~~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~ 378 (414)
T PRK10483 300 GVTLGLFDYLADLFGFDDSAMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKRFGSPK 378 (414)
T ss_pred HHHHHHHHHHHHHhCCCCccccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999876542 222333555678899999998 88899999876 7778889999999999975 2222
Q ss_pred hh----HhhhhhhhhhhHHHHHHHH
Q 019141 313 NG----IVMDAALLVFGVVIGISGT 333 (345)
Q Consensus 313 ~~----~~~~~~~i~~g~~~~v~g~ 333 (345)
++ +.....++++|+...+.-.
T Consensus 379 y~v~Gg~~~l~~~~~~g~~~i~~~i 403 (414)
T PRK10483 379 FRVWGGKPMIVLILLFGVGNALVHI 403 (414)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHH
Confidence 21 2223455555665554433
No 13
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.68 E-value=5.2e-15 Score=138.00 Aligned_cols=307 Identities=12% Similarity=0.098 Sum_probs=201.7
Q ss_pred CCCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHHhh
Q 019141 17 FSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGL 96 (345)
Q Consensus 17 ~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl 96 (345)
.++..++.+++|+.+||+|+.+..+...+..|+.+++|+...|+.+++.+++..+.+ .+++...+++..+.-+.
T Consensus 67 ~~~g~~l~tma~~~LG~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~------i~~~~~~llF~~~~~~~ 140 (415)
T PRK09664 67 YPVGSSFNTITKDLIGNTWNIISGITVAFVLYILTYAYISANGAIISETISMNLGYH------ANPRIVGICTAIFVASV 140 (415)
T ss_pred CCCCCCHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCC------CcHHHHHHHHHHHHHHH
Confidence 457789999999999999999999999999999999999999999999987522211 22232222232222222
Q ss_pred cccCCCCchhhHHHHHHHHHHHHhhheeeeecccccccC-Ccccccc----CcchhhHHHhhhhhhhcceeeeccchhhc
Q 019141 97 NSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQR-PALKAFG----DFSVFSYGIGVAVYAFEGVGMILPLESET 171 (345)
Q Consensus 97 ~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~faf~~~~~~~~i~~~m 171 (345)
.+.. .+...+.+.+-...+++..+..+....++...+. .+.++.. .+..+..++|++.+||+.|+++|++.+.+
T Consensus 141 v~~g-t~~vd~~nr~l~~~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~ 219 (415)
T PRK09664 141 LWIS-SLAASRITSLFLGLKIISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICY 219 (415)
T ss_pred HHhc-hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHh
Confidence 2222 2444444443333333333332222222211110 0111110 12347789999999999999999999998
Q ss_pred cc-chhhhhhHHHHHHHHHHHHHHHh--hhh---------hheecCccccce---ecccCCchHHHHHHHHHHHHHHhhc
Q 019141 172 RN-KQRFGRILGWCMAFISLLYGSFG--ALG---------YFAFGEETKDII---TTNFGAGLVSTLVNVGLCVNLFLTF 236 (345)
Q Consensus 172 ~~-p~~~~~~~~~a~~i~~~~Y~~~g--~~g---------y~~fG~~~~~~i---~~n~~~~~~~~~~~~~~~i~~~~s~ 236 (345)
++ +||.+|++..+..+..++|..-= ..| -...|+++++-+ ..+.+..+......+...+++.+||
T Consensus 220 ~~d~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSF 299 (415)
T PRK09664 220 GKRKDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSF 299 (415)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHH
Confidence 86 58899999999999999986422 222 112232332211 1222334667788888899999999
Q ss_pred ccchhhHHHHHHhhhccccc---chHHHHHHHHHHHHHHhhcCC-ccchhhhcchhhHHHHHHHHHHHHHHHHhcc-cCC
Q 019141 237 PLMMNPVYEVVERRFCDYRY---CLWLRWAVVLGVSLVALLVPN-FADFLSLVGSSVCCILGFVLPALFHLIVFKQ-ELG 311 (345)
Q Consensus 237 pl~~~p~~~~l~~~~~~~~~---~~~~r~~~v~~~~~vA~~vp~-~~~i~~l~Ga~~~~~l~filP~l~~~~~~~~-~~~ 311 (345)
-=......|.+.+.++.++. |...-.+..+...++|...|+ |-..++..|.. .+.+..++|+++-+|.||+ +.+
T Consensus 300 lGv~LGL~D~l~D~~~~~~~~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~ 378 (415)
T PRK09664 300 FGVTLGLFDYLADLFKIDNSHGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQ 378 (415)
T ss_pred HHHHHHHHHHHHHHhCCCCccccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCC
Confidence 99999999999999865532 222333455678899999998 88999999886 6678889999999999975 222
Q ss_pred h----hhHhhhhhhhhhhHHHHHH
Q 019141 312 W----NGIVMDAALLVFGVVIGIS 331 (345)
Q Consensus 312 ~----~~~~~~~~~i~~g~~~~v~ 331 (345)
. ..+..-.+.+.+|++..+.
T Consensus 379 ~y~v~GG~~~l~~~~~~g~~ii~~ 402 (415)
T PRK09664 379 MFTVWGGNLIPAIVILFGITVILC 402 (415)
T ss_pred CceeeCCHHHHHHHHHHHHHHHHH
Confidence 1 1233445555566655544
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.51 E-value=9.2e-13 Score=123.22 Aligned_cols=311 Identities=12% Similarity=0.085 Sum_probs=205.8
Q ss_pred CCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHHhhc
Q 019141 18 SKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLN 97 (345)
Q Consensus 18 ~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~ 97 (345)
++..++.|++|..+||+|+.+..++..+..|..+.+|...+.+.+.+.+.+..+.+ + .+|.....++..+.....
T Consensus 79 ~~~~~i~~v~~~~lG~~g~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~--~---~~r~l~slifv~~l~~iv 153 (443)
T PRK13629 79 NPSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFA--P---LNRGFVALFLLLLMAFVI 153 (443)
T ss_pred CCCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcC--C---ccHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999888888877655432210 0 234433333332222222
Q ss_pred ccCCCCchhhHHHHHHHHHHHHhhheeeeecccccccC---Ccc---cccc---CcchhhHHHhhhhhhhcceeeeccch
Q 019141 98 SIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQR---PAL---KAFG---DFSVFSYGIGVAVYAFEGVGMILPLE 168 (345)
Q Consensus 98 ~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~---~~~~---~~~~~~~~~~~~~faf~~~~~~~~i~ 168 (345)
.. .-+..-+++..-+...+...+....+..+++..+. .+. +... .......++|++.+||+.|+++|++.
T Consensus 154 ~~-G~~~v~kv~~~Lv~~~i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~ 232 (443)
T PRK13629 154 WF-GKDLMVKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFV 232 (443)
T ss_pred Hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHH
Confidence 22 23555555554444444444433333344332111 011 1110 11247889999999999999999988
Q ss_pred hh----cc-----c--chhhhhhHHHHHHHHHHHHHHHhhhhhheecCc-----cccce--ecc----cCC---------
Q 019141 169 SE----TR-----N--KQRFGRILGWCMAFISLLYGSFGALGYFAFGEE-----TKDII--TTN----FGA--------- 217 (345)
Q Consensus 169 ~~----m~-----~--p~~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~-----~~~~i--~~n----~~~--------- 217 (345)
+. .+ | +||.+|++.++..+..++|+..-+..-..-+.+ .++|+ +.. +++
T Consensus 233 ~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~ 312 (443)
T PRK13629 233 VSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFA 312 (443)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccch
Confidence 87 43 3 578899999999999999987665554444432 12333 111 232
Q ss_pred chHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhcc----c-c---c----chHHHHHHHHHHHHHHhhcCCccchhhhc
Q 019141 218 GLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCD----Y-R---Y----CLWLRWAVVLGVSLVALLVPNFADFLSLV 285 (345)
Q Consensus 218 ~~~~~~~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~----~-~---~----~~~~r~~~v~~~~~vA~~vp~~~~i~~l~ 285 (345)
........+...+++.+||-=.....+|.++..+.+ . + . +......+.+.++.+|..-|++-.+++-+
T Consensus 313 ~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~ 392 (443)
T PRK13629 313 ITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAM 392 (443)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHh
Confidence 235566777778889999999999999999888831 1 1 1 12234456667889999999999999988
Q ss_pred chhhHHHHHHHHHHHHHHHHhcccCChhhHhhhhhhhhhhHHHHHHHHHH
Q 019141 286 GSSVCCILGFVLPALFHLIVFKQELGWNGIVMDAALLVFGVVIGISGTWS 335 (345)
Q Consensus 286 Ga~~~~~l~filP~l~~~~~~~~~~~~~~~~~~~~~i~~g~~~~v~g~~~ 335 (345)
|+-....+.|++|...-+|.-.-+ +.+.+..|+++++.|++......|+
T Consensus 393 ~gPiia~il~l~P~y~i~kvp~l~-~yr~~~~n~fv~~~Gl~~i~~~~~~ 441 (443)
T PRK13629 393 GAPIIASLLCLLPMYAIRKAPSLA-KYRGRLDNVFVTVIGLLTILNIVYK 441 (443)
T ss_pred hhHHHHHHHHHHHHHHHHccHHHH-HhCCCchhHHHHHHHHHHHHHHHHh
Confidence 888888999999998887764321 1112335889999998876655543
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.50 E-value=5.1e-13 Score=125.44 Aligned_cols=300 Identities=14% Similarity=0.086 Sum_probs=201.5
Q ss_pred cCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHHhhccc
Q 019141 20 INSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSI 99 (345)
Q Consensus 20 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~ 99 (345)
..++.|++++.+||+++.+..+...+..+..+.+|....++.+.+.+.+....+ .+.+....+.....+-....
T Consensus 65 ~~~i~~~~~~~fGk~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~------~p~~~i~~lilv~il~~iv~ 138 (397)
T TIGR00814 65 CEDITEVVEEHFGKNWGILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTA------PPLRGLLSLALILILVAIMS 138 (397)
T ss_pred CCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------CcHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999988887643321 11232222222222222333
Q ss_pred CCCCchhhHHHHHHHHHHHHhhheeeeecccccccCC-ccccc-cCcchhhHHHhhhhhhhcceeeeccch----hhcc-
Q 019141 100 PTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRP-ALKAF-GDFSVFSYGIGVAVYAFEGVGMILPLE----SETR- 172 (345)
Q Consensus 100 ~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~faf~~~~~~~~i~----~~m~- 172 (345)
...+.+..++.+-....+...........++.+.++- +.+.. +.+.++..+.+...+||.+|+++|+.. +|.+
T Consensus 139 ~G~~~i~r~~~il~~~~ii~l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~ 218 (397)
T TIGR00814 139 FGEKLLFKIMGPLVFPLVLILVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGD 218 (397)
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCC
Confidence 4556666666555544444444333333343322111 11111 134678999999999999999999997 3343
Q ss_pred -c--chhhhhhHHHHHHHHHHHHHHHhhhhhheecCcc-----ccce--ec----ccCCchHHHHHHHHHHHHHHhhccc
Q 019141 173 -N--KQRFGRILGWCMAFISLLYGSFGALGYFAFGEET-----KDII--TT----NFGAGLVSTLVNVGLCVNLFLTFPL 238 (345)
Q Consensus 173 -~--p~~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~-----~~~i--~~----n~~~~~~~~~~~~~~~i~~~~s~pl 238 (345)
| +||.+|+..++..+..++|+..-+......+.+. ++|+ +. ..++............+++.+|+--
T Consensus 219 ~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG 298 (397)
T TIGR00814 219 KEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFG 298 (397)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3 5778999999999999998877666555555332 2232 11 1233456677777888889999999
Q ss_pred chhhHHHHHHhhhc-------c-cccc---hHHHHHHHHHHHHHHhhcCCccchhhhcchhhHHHHHHHHHHHHHHHHhc
Q 019141 239 MMNPVYEVVERRFC-------D-YRYC---LWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFK 307 (345)
Q Consensus 239 ~~~p~~~~l~~~~~-------~-~~~~---~~~r~~~v~~~~~vA~~vp~~~~i~~l~Ga~~~~~l~filP~l~~~~~~~ 307 (345)
.....+|.+++.+. + .+.+ ......+.+.++.+|..-|++-.+++-+|+-....+.|++|...-+|.-.
T Consensus 299 ~~lg~~e~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~ 378 (397)
T TIGR00814 299 HYLGAREGLNGIVLNSLKMKGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPA 378 (397)
T ss_pred HHHhHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHH
Confidence 99999999999882 1 1112 22444566778899999999999999888888888999999988877643
Q ss_pred ccCChhhHhhhhhhhhhhH
Q 019141 308 QELGWNGIVMDAALLVFGV 326 (345)
Q Consensus 308 ~~~~~~~~~~~~~~i~~g~ 326 (345)
-+ +.+.+..++++++.|+
T Consensus 379 l~-~~~~~~~~~fv~~~g~ 396 (397)
T TIGR00814 379 LK-KYRGRISNVFVTVIGL 396 (397)
T ss_pred HH-HhCCCcchheeEeeec
Confidence 11 1112234666666664
No 16
>TIGR00909 2A0306 amino acid transporter.
Probab=99.10 E-value=9.6e-09 Score=98.43 Aligned_cols=295 Identities=10% Similarity=0.034 Sum_probs=161.8
Q ss_pred chhhhhhhcCCCCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCccccccccc-----c
Q 019141 7 TRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLS-----P 81 (345)
Q Consensus 7 c~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~-----~ 81 (345)
|+.++..+ +++....-+..++.+||+..++......+........+....++.+...++....+.. .+... .
T Consensus 55 ~~~el~~~--~p~~Gg~y~~~~~~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 131 (429)
T TIGR00909 55 VYAELAAM--LPVAGSPYTYAYEAMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLP-AVLTAKPGNGG 131 (429)
T ss_pred HHHHHHhh--cCCCCcceeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCc-hhhhcCCcccc
Confidence 44555444 2344445566788999999999999988888878888888888888777653211100 00000 0
Q ss_pred hhHHHHHHHHHHHhhcccCCCCchhhHHHHHHHHHHHHhhheeeeecccccc-cCCccccccCcchhhHHHhhhhhhhcc
Q 019141 82 KALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMK-QRPALKAFGDFSVFSYGIGVAVYAFEG 160 (345)
Q Consensus 82 ~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~faf~~ 160 (345)
...+..+......-....+..+..+.+..+.....+..++..+......... +..+... .++.++..++....++|.|
T Consensus 132 ~~~~~~i~~~~~~~~l~~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~af~G 210 (429)
T TIGR00909 132 VFNLPALLIVLFLTYILYLGAKESGKVNDILVVLKVAALLLFAALGAIHFASNNYTPFMP-MGFGGVGAATALVFFAFIG 210 (429)
T ss_pred cccHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCC-CcHHHHHHHHHHHHHHHhh
Confidence 0001111111122223344566666666655544443333222211111111 1111111 2455678889999999999
Q ss_pred eeeeccchhhcccc-hhhhhhHHHHHHHHHHHHHHHhhhhhheecCc--ccc-c----eecccCCchHHHHHHHHHHHHH
Q 019141 161 VGMILPLESETRNK-QRFGRILGWCMAFISLLYGSFGALGYFAFGEE--TKD-I----ITTNFGAGLVSTLVNVGLCVNL 232 (345)
Q Consensus 161 ~~~~~~i~~~m~~p-~~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~--~~~-~----i~~n~~~~~~~~~~~~~~~i~~ 232 (345)
........+|+||| |+.+|++..+..+..++|.+.........+.+ .++ + +..+...++...+..+...++.
T Consensus 211 ~e~~~~~~~E~~~p~r~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 290 (429)
T TIGR00909 211 FEAISTAAEEVKNPERDIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSI 290 (429)
T ss_pred HHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 99999999999998 55899999999999999998876544332211 111 1 1111222344455666666666
Q ss_pred HhhcccchhhHHHHHHhhhcccc----------c-chHHHHHHH-HHHHHHHhhcCCccchhhhcchhhHHHHHHHHHHH
Q 019141 233 FLTFPLMMNPVYEVVERRFCDYR----------Y-CLWLRWAVV-LGVSLVALLVPNFADFLSLVGSSVCCILGFVLPAL 300 (345)
Q Consensus 233 ~~s~pl~~~p~~~~l~~~~~~~~----------~-~~~~r~~~v-~~~~~vA~~vp~~~~i~~l~Ga~~~~~l~filP~l 300 (345)
+.+..-......+.+...-+++. + +.-.+..++ .....+.....+++.+.++. ..+..+.|++.++
T Consensus 291 ~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~--~~~~~~~y~~~~~ 368 (429)
T TIGR00909 291 ASVMLAGIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELT--SIGTLIAFAAVNV 368 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHH--HHHHHHHHHHHHH
Confidence 66665555555555544433211 1 111111111 11111222235667776653 4455677888877
Q ss_pred HHHHHhc
Q 019141 301 FHLIVFK 307 (345)
Q Consensus 301 ~~~~~~~ 307 (345)
..++.||
T Consensus 369 a~~~lr~ 375 (429)
T TIGR00909 369 AVIILRR 375 (429)
T ss_pred HHHHHHh
Confidence 7777765
No 17
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.06 E-value=1.4e-08 Score=97.16 Aligned_cols=285 Identities=15% Similarity=0.157 Sum_probs=168.8
Q ss_pred CCCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHHhh
Q 019141 17 FSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGL 96 (345)
Q Consensus 17 ~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl 96 (345)
+++....-+..++++||+..++......+.......++.....+.+...++...++. + . ....+.+......-.
T Consensus 58 ~p~~GG~y~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~-~~~~i~~~~~~~~~~ 131 (426)
T PF13520_consen 58 YPSAGGIYVWVSRAFGPFWGFIVGWLYWVAYILSLASVASSFASYLLSLFGPDLNPS---P--W-PQFLIAIILILLFTL 131 (426)
T ss_dssp TTSSTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCS---H--H-HHHHHHHHHHHHHHH
T ss_pred CCCcCeeeehhhhcccccchhcccceeEEEeeccccccccchhhhhhhccccccccc---c--c-hheeeeecccccceE
Confidence 557777788899999999999999999999888888888888888877664311110 0 1 122222222222333
Q ss_pred cccCCCCchhhHHHHHHHHHH-HHhhhee----eeeccccccc----CCccccccCcchhhHHHhhhhhhhcceeeeccc
Q 019141 97 NSIPTLTHLAPLSIFADIVDL-GAMGLVM----VEDVMISMKQ----RPALKAFGDFSVFSYGIGVAVYAFEGVGMILPL 167 (345)
Q Consensus 97 ~~~~~l~~l~~~s~~~~~~~~-~~~~~v~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i 167 (345)
...+..|..+++........+ ..+.+.+ .....+..+. .++.... .+.....+++..+|+|.|-...+..
T Consensus 132 l~~~g~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~e~~~~~ 210 (426)
T PF13520_consen 132 LNLLGIKLSGKIQNILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPS-GWPGFLAGFSVAFFAFSGFEAIASL 210 (426)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCS-SSSHHHHHHHHHGGGGTTTTHHHHG
T ss_pred eeechhhhhhhhhhhhhhhhhhhhhhhheeEEEeeecccccccccccccccCCc-cccchhhHHHHHHhhcccccccccc
Confidence 344456666666655544443 2221111 1111111110 1111111 3335788999999999999999999
Q ss_pred hhhcccchhhhhhHHHHHHHHHHHHHHHhhhhhheecCcc---ccce-------ecccCCchHHHHHHHHHHHHHHhhcc
Q 019141 168 ESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEET---KDII-------TTNFGAGLVSTLVNVGLCVNLFLTFP 237 (345)
Q Consensus 168 ~~~m~~p~~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~---~~~i-------~~n~~~~~~~~~~~~~~~i~~~~s~p 237 (345)
.+|+|| |+.+|++..+..++.++|.+....-....+++. .++. .+..+.++...+..+...+..+.+..
T Consensus 211 ~~E~k~-k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 289 (426)
T PF13520_consen 211 AEENKN-KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSIN 289 (426)
T ss_dssp GGGSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHH
T ss_pred cccccc-hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccc
Confidence 999998 899999999999999999998776666655432 1121 11122235556666677777777777
Q ss_pred cchhhHHHHHHhhhcccc----------c--chHHHHHHHHHHHHHHh---hcC--CccchhhhcchhhHHHHHHHHHHH
Q 019141 238 LMMNPVYEVVERRFCDYR----------Y--CLWLRWAVVLGVSLVAL---LVP--NFADFLSLVGSSVCCILGFVLPAL 300 (345)
Q Consensus 238 l~~~p~~~~l~~~~~~~~----------~--~~~~r~~~v~~~~~vA~---~vp--~~~~i~~l~Ga~~~~~l~filP~l 300 (345)
.......+.+...-+++. + +...-....+++.++.. ..| +++.+.+. +.....+.++++.+
T Consensus 290 ~~~~~~sR~l~~~a~d~~lP~~~~~~~k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~ 367 (426)
T PF13520_consen 290 AFIFGASRLLYAMARDGVLPKWFAKVNKFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSL--SSVGYLISYILVIL 367 (426)
T ss_dssp HHHHHHHHHHHHHHHTTSSSGGGGTTSSSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHH--HHHHTHHHHHHHHH
T ss_pred hhhcchhhcccccccccchhhhhhhccccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 766666666665554321 1 11111222222322322 224 34555554 45566678888888
Q ss_pred HHHHHhcccCC
Q 019141 301 FHLIVFKQELG 311 (345)
Q Consensus 301 ~~~~~~~~~~~ 311 (345)
.+++.+++++.
T Consensus 368 ~~~~~~~~~~~ 378 (426)
T PF13520_consen 368 AVLFLRRKRPD 378 (426)
T ss_dssp HHHHTHHHSCS
T ss_pred HHHHHhhhcCC
Confidence 88888765433
No 18
>PRK11021 putative transporter; Provisional
Probab=99.02 E-value=1.1e-07 Score=90.72 Aligned_cols=288 Identities=14% Similarity=0.058 Sum_probs=145.3
Q ss_pred cchhhhhhhcCCCCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHH
Q 019141 6 HTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALY 85 (345)
Q Consensus 6 ~c~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 85 (345)
.|+.++..+. |+....-...++.+|++..+...............+........+...++. + + .. ...
T Consensus 50 l~~aEl~s~~--P~aGG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~---~~-~~~ 117 (410)
T PRK11021 50 IVFARLGRHF--PHAGGPAHFVGMAFGPRLGRVTGWLFLSVIPVGLPAALQIAAGFGQALFGW---S---S---WQ-LLL 117 (410)
T ss_pred HHHHHHHHhC--CCCCCHHHhHHHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC---C---C---ch-HHH
Confidence 3555666553 445566667889999999888888776543333333333344444444331 1 0 11 111
Q ss_pred HHHHHHHHHhhcccCCCCchhhHHHHHHHHHHHHhhheeeeeccccccc-CCccccccCcchhhHHHhhhhhhhcceeee
Q 019141 86 IWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQ-RPALKAFGDFSVFSYGIGVAVYAFEGVGMI 164 (345)
Q Consensus 86 ~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~faf~~~~~~ 164 (345)
..+.....+-....+..|..+.+.....+..+..+.........+..+. .++... .++.++..++....|+|.|....
T Consensus 118 ~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~af~G~e~~ 196 (410)
T PRK11021 118 AELLTLALLWLLNLRGASSSANLQTVIALLIVALVVAIWWAGDIKPADIPFPAPGS-IEWSGLFAALGVMFWCFVGIEAF 196 (410)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhcCCCCCCCC-ccHHHHHHHHHHHHHHHhcHHHH
Confidence 1111111122233445555555544333222222211111111111100 011111 25567888999999999999999
Q ss_pred ccchhhcccc-hhhhhhHHHHHHHHHHHHHHHhhh--hhheecCccc--cce---ecc-cCCchHHHHHHHHHHHHHHhh
Q 019141 165 LPLESETRNK-QRFGRILGWCMAFISLLYGSFGAL--GYFAFGEETK--DII---TTN-FGAGLVSTLVNVGLCVNLFLT 235 (345)
Q Consensus 165 ~~i~~~m~~p-~~~~~~~~~a~~i~~~~Y~~~g~~--gy~~fG~~~~--~~i---~~n-~~~~~~~~~~~~~~~i~~~~s 235 (345)
...-+|+||| |+.+|++..+..++.++|.+.... +...++|... ++. ... +++ +...+..+...++.+.+
T Consensus 197 ~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~ii~i~~~~s~~~~ 275 (410)
T PRK11021 197 AHLASEFKNPERDFPRALMIGLLLAGLVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGG-YALWVICVIGYLACFAS 275 (410)
T ss_pred HhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCc-hhHHHHHHHHHHHHHHH
Confidence 9999999998 559999999999999999998764 2232333211 111 111 122 12223333334444444
Q ss_pred cccchhhHHHHHHhhhccc----------cc--chH---HHHHHHHHHHHHHh-hcCCccchhhhcchhhHHHHHHHHHH
Q 019141 236 FPLMMNPVYEVVERRFCDY----------RY--CLW---LRWAVVLGVSLVAL-LVPNFADFLSLVGSSVCCILGFVLPA 299 (345)
Q Consensus 236 ~pl~~~p~~~~l~~~~~~~----------~~--~~~---~r~~~v~~~~~vA~-~vp~~~~i~~l~Ga~~~~~l~filP~ 299 (345)
.........+.+...-+++ |+ +.. ....+.....++.. .-.+++.+.++. .....+.|.++.
T Consensus 276 ~~~~~~~~sR~l~a~ardg~lP~~~~k~~~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~--~~~~li~y~~~~ 353 (410)
T PRK11021 276 VNIYTQSFARLVWSQAREGRPPSYLARLSARGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYA--NGIFVLIYLLCM 353 (410)
T ss_pred HHHHHHHHHHHHHHHHccCCccHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH--HHHHHHHHHHHH
Confidence 4333333334443332221 11 111 11111111111111 235777777763 355678899998
Q ss_pred HHHHHHhccc
Q 019141 300 LFHLIVFKQE 309 (345)
Q Consensus 300 l~~~~~~~~~ 309 (345)
+..+|+++++
T Consensus 354 ~a~~~l~~~~ 363 (410)
T PRK11021 354 LAACKLLKGR 363 (410)
T ss_pred HHHHHHhccc
Confidence 8888887653
No 19
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=98.99 E-value=4.7e-08 Score=94.72 Aligned_cols=292 Identities=11% Similarity=0.047 Sum_probs=152.7
Q ss_pred cchhhhhhhcCCCCcC-ChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhH
Q 019141 6 HTRRKLETIHGFSKIN-SFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKAL 84 (345)
Q Consensus 6 ~c~~~~~~~~~~~~~~-~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (345)
-|+.++..+.+ +.. ..-+.+++.+|++..+++.....+.......++.....+.+...++..... .+...
T Consensus 53 l~~aeL~s~~P--~~gGG~y~y~~~~fG~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~-------~~~~~ 123 (468)
T TIGR03810 53 FSFQNLANKKP--ELDGGVYSYAKAGFGPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGG-------NNPPS 123 (468)
T ss_pred HHHHHHHhhCC--CCCCChhhhHHhHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC-------CcHHH
Confidence 45566666533 322 344448999999999999888777665555666655555555444432111 01111
Q ss_pred HH-HHHHHHHHhhcccCCCCchhhHHHHHHHHHHHHhhhee----e-eeccccccc-CCc----cccccCcchhhHHHhh
Q 019141 85 YI-WGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVM----V-EDVMISMKQ-RPA----LKAFGDFSVFSYGIGV 153 (345)
Q Consensus 85 ~~-~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~----~-~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~ 153 (345)
+. .......+-....+..+..+.+..+.....+..+...+ . .......++ .++ ..+.+.+.++..++..
T Consensus 124 ~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (468)
T TIGR03810 124 IIGASVLLWCVHFLVLRGVEGAAFINTITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLV 203 (468)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHH
Confidence 11 11111112222235556555555544433222111111 1 011100000 000 0111123356678888
Q ss_pred hhhhhcceeeeccchhhcccchhhhhhHHHHHHHHHHHHHHHhhhhhheecCc----cccc----eecccCCchHHHHHH
Q 019141 154 AVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEE----TKDI----ITTNFGAGLVSTLVN 225 (345)
Q Consensus 154 ~~faf~~~~~~~~i~~~m~~p~~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~----~~~~----i~~n~~~~~~~~~~~ 225 (345)
..|+|.|-.......+|.||+|+.+|++..+.....++|.+.....+...+++ .+++ +..+...++...+..
T Consensus 204 ~~~~f~G~e~~~~~a~e~k~~k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~ 283 (468)
T TIGR03810 204 TVWVFIGIEGASMLSARAEKRSDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLIN 283 (468)
T ss_pred HHHHHHhHhHHhhhHhhccCcccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHH
Confidence 99999999888889999999889999999999999999999887665544421 1111 111222224445566
Q ss_pred HHHHHHHHhhcccchhhHHHHHHhhhcc----------cc--cchH---HHHHHHHHHHHHHhhc-CCccchhhhcchhh
Q 019141 226 VGLCVNLFLTFPLMMNPVYEVVERRFCD----------YR--YCLW---LRWAVVLGVSLVALLV-PNFADFLSLVGSSV 289 (345)
Q Consensus 226 ~~~~i~~~~s~pl~~~p~~~~l~~~~~~----------~~--~~~~---~r~~~v~~~~~vA~~v-p~~~~i~~l~Ga~~ 289 (345)
+...++.+.+.--......+.....-++ +| .+.. ...++.....+....- +.++.+.++ +..
T Consensus 284 ~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~f~k~~~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~--~~~ 361 (468)
T TIGR03810 284 IGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYFGKENANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISL--ATS 361 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH--HHH
Confidence 6666666665555555444444333222 11 1111 1111111111111111 235556665 344
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 019141 290 CCILGFVLPALFHLIVFKQ 308 (345)
Q Consensus 290 ~~~l~filP~l~~~~~~~~ 308 (345)
...+.|.++++.++|.+++
T Consensus 362 ~~li~y~~~~~~~~~l~~~ 380 (468)
T TIGR03810 362 AILVPYLWSAAYQVKLSWR 380 (468)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6678999999999998754
No 20
>PRK10655 potE putrescine transporter; Provisional
Probab=98.94 E-value=1.7e-07 Score=90.01 Aligned_cols=184 Identities=10% Similarity=-0.015 Sum_probs=101.2
Q ss_pred cchhhhhhhcCCCCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHH
Q 019141 6 HTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALY 85 (345)
Q Consensus 6 ~c~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 85 (345)
-|+-++..+ .++....-+..++.+|++..+++.+...+.......++.....+.+...++...+ +...+
T Consensus 56 ~~~aeL~~~--~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~---------~~~~~ 124 (438)
T PRK10655 56 YAFAKCGMF--SRKSGGMGGYAEYAFGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGATLS---------PVQIC 124 (438)
T ss_pred HHHHHHhhh--CCCCCchHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---------hHHHH
Confidence 345555444 3344455566789999999898888876666555555544445555555442111 11111
Q ss_pred HHHH-HHHHHhhcccCCCCchhhHHHHHHHHHHHHhhheeeeec--ccccccCCcccc--ccCcchhhHHHhhhhhhhcc
Q 019141 86 IWGC-FPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDV--MISMKQRPALKA--FGDFSVFSYGIGVAVYAFEG 160 (345)
Q Consensus 86 ~~i~-~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~faf~~ 160 (345)
++.. .+...-....+..+..+.+..+.....+..+.++.+... .+.....+.... .+.+.++..++....|+|.|
T Consensus 125 ~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G 204 (438)
T PRK10655 125 LATIGVLWLCTVANFGGARITGQISSVTVWGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLG 204 (438)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhh
Confidence 1111 111111222334444444444333322222211111110 011111111111 11234566778889999999
Q ss_pred eeeeccchhhcccch-hhhhhHHHHHHHHHHHHHHHhhhhh
Q 019141 161 VGMILPLESETRNKQ-RFGRILGWCMAFISLLYGSFGALGY 200 (345)
Q Consensus 161 ~~~~~~i~~~m~~p~-~~~~~~~~a~~i~~~~Y~~~g~~gy 200 (345)
-.....+-+|+|||+ +.+|++..+..+..++|.+......
T Consensus 205 ~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 205 LESACANSDAVENPERNVPIAVLGGTLGAAVIYIVSTNVIA 245 (438)
T ss_pred hhhhhhhHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999985 6999999999999999998765543
No 21
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.86 E-value=4.1e-07 Score=87.56 Aligned_cols=179 Identities=16% Similarity=0.089 Sum_probs=105.3
Q ss_pred cchhhhhhhcCCCCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHH
Q 019141 6 HTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALY 85 (345)
Q Consensus 6 ~c~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 85 (345)
-|+.++..+ .++....-..+++.+|+...+++.....+.......++....++.+...++.. + ....
T Consensus 58 ~~~aEl~s~--~P~~Gg~y~~~~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~--~---------~~~~ 124 (442)
T TIGR00908 58 FSLAELSTM--IPTAGGGYGFARRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVG--P---------GWLA 124 (442)
T ss_pred HHHHHHHHH--cCCCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--c---------hhHH
Confidence 355666655 34555566678999999999999998888877777888888888877665431 1 1111
Q ss_pred HHHHHHHHHhhcccCCCCchhhHHHHHHHHHHHHhhheeeeecc-----ccccc-CCccccc--cCcchhhHHHhhhhhh
Q 019141 86 IWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVM-----ISMKQ-RPALKAF--GDFSVFSYGIGVAVYA 157 (345)
Q Consensus 86 ~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~-----~~~~~-~~~~~~~--~~~~~~~~~~~~~~fa 157 (345)
..+...+ +-..-.+..|..+.+.....+..+..+.+.+..... +..+. ..+...+ ..+.++..++....|+
T Consensus 125 ~~~~~~~-~~~ln~~g~~~~~~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 203 (442)
T TIGR00908 125 ALVFYIV-FIGINILGVGEAAKLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWF 203 (442)
T ss_pred HHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHH
Confidence 1111111 112223334444444433322222211111110001 00110 0111111 1234567788888999
Q ss_pred hcceeeeccchhhcccch-hhhhhHHHHHHHHHHHHHHHhhh
Q 019141 158 FEGVGMILPLESETRNKQ-RFGRILGWCMAFISLLYGSFGAL 198 (345)
Q Consensus 158 f~~~~~~~~i~~~m~~p~-~~~~~~~~a~~i~~~~Y~~~g~~ 198 (345)
|.|.......-+|+|||+ +.+|++..+..++.++|......
T Consensus 204 f~G~e~~~~~aeE~k~P~r~iprai~~s~~~~~~~~~~~~~~ 245 (442)
T TIGR00908 204 FLAVEGVAMAAEETKNPKRDIPRGLIGAILTLLALAAGILVV 245 (442)
T ss_pred HHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999985 58999999999888888876543
No 22
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=98.83 E-value=5.5e-07 Score=87.44 Aligned_cols=293 Identities=13% Similarity=0.052 Sum_probs=148.7
Q ss_pred chhhhhhhcCCCC-cCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHH
Q 019141 7 TRRKLETIHGFSK-INSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALY 85 (345)
Q Consensus 7 c~~~~~~~~~~~~-~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 85 (345)
|+.++.++. |+ ....-+..++.+||+..++..+...........++.....+.+..+++.....+ + ......
T Consensus 60 ~~aEl~s~~--P~~sGG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~---~--~~~~~~ 132 (473)
T TIGR00905 60 VFAILATKK--PELDGGIYAYAREGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGN---P--VPSILG 132 (473)
T ss_pred HHHHHHhhC--CCCCCChhhhHHhHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC---c--HHHHHH
Confidence 445555543 33 333444579999999999999887766666666666666666666655322110 0 111111
Q ss_pred HHHHHHHHHhhcccCCCCchhhHHHHHHHHHHHHhhhee----e-eeccccc-ccCCc-cc-cccCcchhhHHHhhhhhh
Q 019141 86 IWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVM----V-EDVMISM-KQRPA-LK-AFGDFSVFSYGIGVAVYA 157 (345)
Q Consensus 86 ~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~----~-~~~~~~~-~~~~~-~~-~~~~~~~~~~~~~~~~fa 157 (345)
.. ......-..-.+..+..+.+..+.....+..++.++ . ....+.. +..++ .+ ..+++..+..+.....|+
T Consensus 133 ~~-~~~~~~~~ln~~Gi~~~~~i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a 211 (473)
T TIGR00905 133 AS-VLLWVFTFLVLRGVRQAAFINTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWV 211 (473)
T ss_pred HH-HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHH
Confidence 11 111112223344555555555544433222211111 1 1111100 00011 11 011344567788889999
Q ss_pred hcceeeeccchhhcccchhhhhhHHHHHHHHHHHHHHHhhhhhheecCc----cccc-e---ecccCCchHHHHHHHHHH
Q 019141 158 FEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEE----TKDI-I---TTNFGAGLVSTLVNVGLC 229 (345)
Q Consensus 158 f~~~~~~~~i~~~m~~p~~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~----~~~~-i---~~n~~~~~~~~~~~~~~~ 229 (345)
|.|-.......+|+||+|+.+|++..+..++.++|.+.........+.+ .+++ . .......+...+..+...
T Consensus 212 f~G~e~~~~~a~E~k~~r~iPrai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~ 291 (473)
T TIGR00905 212 FIGIEGAVVSSGRAKNKSDVGKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLI 291 (473)
T ss_pred HHhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHH
Confidence 9999999999999999777999999999999999998876544433321 1111 1 011111122333444444
Q ss_pred HHHHhhcccchhhHHHHHHhhhccc----------ccchHHHHHHH--HHHH--HHHhhc--CCccchhhhcchhhHHHH
Q 019141 230 VNLFLTFPLMMNPVYEVVERRFCDY----------RYCLWLRWAVV--LGVS--LVALLV--PNFADFLSLVGSSVCCIL 293 (345)
Q Consensus 230 i~~~~s~pl~~~p~~~~l~~~~~~~----------~~~~~~r~~~v--~~~~--~vA~~v--p~~~~i~~l~Ga~~~~~l 293 (345)
++.+.+.--......+.+...-+++ +++.-.+..++ +++. .+.... .+++.+.++ +..+..+
T Consensus 292 is~~~~~~~~~~~~sR~~~amardg~lP~~~~~v~~~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~--~~~~~~i 369 (473)
T TIGR00905 292 ISVLGSLLSWTMLAAEVPFSAAKDGLFPKIFGRVNKNGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSL--AVVMILV 369 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHhhCccCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH--HHHHHHH
Confidence 4444443333333334433332221 11100111111 1111 111112 235555555 3556678
Q ss_pred HHHHHHHHHHHHhccc
Q 019141 294 GFVLPALFHLIVFKQE 309 (345)
Q Consensus 294 ~filP~l~~~~~~~~~ 309 (345)
.|.++.+..++.|+++
T Consensus 370 ~y~~~~~a~~~lr~~~ 385 (473)
T TIGR00905 370 PYLLSAAYLLKLAKVG 385 (473)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 8999999888887653
No 23
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=98.82 E-value=4.6e-07 Score=89.50 Aligned_cols=294 Identities=14% Similarity=0.088 Sum_probs=163.2
Q ss_pred cchhhhhhhcCCC-CcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhcc----CCcc-cc-ccc
Q 019141 6 HTRRKLETIHGFS-KINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNS----TTSQ-TI-LGF 78 (345)
Q Consensus 6 ~c~~~~~~~~~~~-~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~----~~~~-~~-~~~ 78 (345)
-|+.++..+..+. +...| .++.+|+...+++.+...+.......+.....++.+..++... ..+. .. .+.
T Consensus 80 l~yaElas~~P~sGg~Y~y---~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~ 156 (557)
T TIGR00906 80 FCYAEFGARVPKAGSAYLY---SYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDG 156 (557)
T ss_pred HHHHHHHHhCCCCCcceee---HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCc
Confidence 3566666554322 34444 5678999999999998888777666666666666666555421 1000 00 000
Q ss_pred c-cchhHHHHHHHHHHHhhcccCCCCchhhHHHHHHHHHHHHhhheeeeeccccc-ccC--------CccccccCcchhh
Q 019141 79 L-SPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISM-KQR--------PALKAFGDFSVFS 148 (345)
Q Consensus 79 ~-~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~-~~~--------~~~~~~~~~~~~~ 148 (345)
. ...... .+..+..+-....+..|..+++..+.....+..+..+++.+..... .+. ++..++ ++.++.
T Consensus 157 l~~~~~~~-a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~-g~~g~l 234 (557)
T TIGR00906 157 LAEYPDFF-AVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPY-GFTGVL 234 (557)
T ss_pred ccccchHH-HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCc-chHHHH
Confidence 0 001111 1111112223345667777777665554443333332222211111 000 011111 345678
Q ss_pred HHHhhhhhhhcceeeeccchhhcccchh-hhhhHHHHHHHHHHHHHHHhhhhhheecCc---cccce---ecccCCchHH
Q 019141 149 YGIGVAVYAFEGVGMILPLESETRNKQR-FGRILGWCMAFISLLYGSFGALGYFAFGEE---TKDII---TTNFGAGLVS 221 (345)
Q Consensus 149 ~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~---~~~~i---~~n~~~~~~~ 221 (345)
.+.....|+|.|-..+.+..+|+|||+| .+|++..+..++.++|.++...-...-+.+ .++++ ....+.++..
T Consensus 235 ~g~~~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~ 314 (557)
T TIGR00906 235 SGAATCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAK 314 (557)
T ss_pred HHHHHHHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHH
Confidence 8899999999999999999999999865 999999999999999998876543333321 11111 1222333444
Q ss_pred HHHHHHHHHHHHhhcccchhhHHHHHHhhhccc-----------c--cchHHHHHHHHHHHHHHhhcCCccchhhhcchh
Q 019141 222 TLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDY-----------R--YCLWLRWAVVLGVSLVALLVPNFADFLSLVGSS 288 (345)
Q Consensus 222 ~~~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~-----------~--~~~~~r~~~v~~~~~vA~~vp~~~~i~~l~Ga~ 288 (345)
.+..+.....++.+.....+...+.+...-+++ | .+........+++.+++.. .+++.+.++. .
T Consensus 315 ~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~-~~~~~l~~l~--s 391 (557)
T TIGR00906 315 YIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFL-FDLKALVDLL--S 391 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHH-cCHHHHHHHH--H
Confidence 555555555566555555555555555444332 1 1111222222333344433 3566666663 4
Q ss_pred hHHHHHHHHHHHHHHHHhc
Q 019141 289 VCCILGFVLPALFHLIVFK 307 (345)
Q Consensus 289 ~~~~l~filP~l~~~~~~~ 307 (345)
.+..+.|.+++...++.|+
T Consensus 392 ig~ll~y~lv~~~~l~lR~ 410 (557)
T TIGR00906 392 IGTLLAYSLVAACVLILRY 410 (557)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 5667999999888888875
No 24
>PRK10746 putative transport protein YifK; Provisional
Probab=98.78 E-value=7.8e-07 Score=86.02 Aligned_cols=289 Identities=11% Similarity=0.016 Sum_probs=150.9
Q ss_pred cchhhhhhhcCCCCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHH
Q 019141 6 HTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALY 85 (345)
Q Consensus 6 ~c~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 85 (345)
.|..++... .|+...+.+.+++.+|++..+.+.....+.......+.....+..+....++ . +...+
T Consensus 61 ~~~aEl~~~--~P~sGg~~~y~~~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~---~--------~~~~~ 127 (461)
T PRK10746 61 RSMGEMLFL--EPVTGSFAVYAHRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPE---M--------AQWIP 127 (461)
T ss_pred HHHHHHHHh--cCCCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---C--------chHHH
Confidence 345555554 3466678888999999999999999888776666666666666665444321 1 11122
Q ss_pred HHHHHHHHHhhcccCCCCchhhHHHHH----HHHHHHHhh--he-eeee-ccccc----ccC-Cccccc-cCcchhhHHH
Q 019141 86 IWGCFPFQLGLNSIPTLTHLAPLSIFA----DIVDLGAMG--LV-MVED-VMISM----KQR-PALKAF-GDFSVFSYGI 151 (345)
Q Consensus 86 ~~i~~~~~~pl~~~~~l~~l~~~s~~~----~~~~~~~~~--~v-~~~~-~~~~~----~~~-~~~~~~-~~~~~~~~~~ 151 (345)
..+...+.. ..-.+..+..+.+.... +..++..++ .. +... .+... ++. ++...+ +++.++..++
T Consensus 128 ~~~~~~~~~-~lN~~gv~~~~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~ 206 (461)
T PRK10746 128 ALIAVALVA-LANLAAVRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTAL 206 (461)
T ss_pred HHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHH
Confidence 111111111 12222333333322211 111111111 11 1111 11000 000 000011 2355678899
Q ss_pred hhhhhhhcceeeeccchhhcccch-hhhhhHHHHHHHHHHHHHHHhhhhhheecCccc----ccee---cccCCchHHHH
Q 019141 152 GVAVYAFEGVGMILPLESETRNKQ-RFGRILGWCMAFISLLYGSFGALGYFAFGEETK----DIIT---TNFGAGLVSTL 223 (345)
Q Consensus 152 ~~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~----~~i~---~n~~~~~~~~~ 223 (345)
+...|+|.|-..+....+|+|||+ +.||++..+.....++|....+......+.+.. ++.. .+.+......+
T Consensus 207 ~~~~faf~G~e~v~~~a~E~knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i 286 (461)
T PRK10746 207 CIVVASYQGVELIGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGI 286 (461)
T ss_pred HHHHHHhcCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHH
Confidence 999999999999999999999985 589999988888888888765544334332211 1111 11222223344
Q ss_pred HHHHHHHHHHhhcccchhhHHHHHHhhhcccc----------cchHHHHHHH-----HHHHHHHhhcCCccchhhhcch-
Q 019141 224 VNVGLCVNLFLTFPLMMNPVYEVVERRFCDYR----------YCLWLRWAVV-----LGVSLVALLVPNFADFLSLVGS- 287 (345)
Q Consensus 224 ~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~----------~~~~~r~~~v-----~~~~~vA~~vp~~~~i~~l~Ga- 287 (345)
.+....++.+.+.--..+...+.+...-+++. +..-.+.+++ ++...+....|+-+.+++.+-+
T Consensus 287 ~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~ 366 (461)
T PRK10746 287 INFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSA 366 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 55555555555555555555555555443321 1100111111 1122233345655555554432
Q ss_pred -hhHHHHHHHHHHHHHHHHhcc
Q 019141 288 -SVCCILGFVLPALFHLIVFKQ 308 (345)
Q Consensus 288 -~~~~~l~filP~l~~~~~~~~ 308 (345)
..+..+.++++++.|+|.||+
T Consensus 367 ~~~~~~i~w~~i~~~~i~~r~~ 388 (461)
T PRK10746 367 SVLPGMVPWFVILISQLRFRRA 388 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 334578999999999999873
No 25
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=98.78 E-value=8.5e-07 Score=85.18 Aligned_cols=188 Identities=10% Similarity=-0.046 Sum_probs=104.6
Q ss_pred cchhhhhhhcCCCCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHH
Q 019141 6 HTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALY 85 (345)
Q Consensus 6 ~c~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 85 (345)
-|+.++..+. |+....-+.+++ +|+...+.+.+...........++.+...+.+...++...++ .....+
T Consensus 55 l~~aEL~s~~--P~~GG~y~y~~~-~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~-------~~~~~~ 124 (435)
T PRK10435 55 YVYARLATKN--PQQGGPIAYAGE-ISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDP-------IPAGIA 124 (435)
T ss_pred HHHHHHHhhC--CCCCChhHHHHH-HCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCh-------HHHHHH
Confidence 4566666653 333344444566 799888888876555444444555555666665555432111 111111
Q ss_pred HHHHHHHHHhhcccCCCCchhhHHHHHHHHHHHHhhheeeeeccccccc--CCccc--cccCcchhhHHHhhhhhhhcce
Q 019141 86 IWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQ--RPALK--AFGDFSVFSYGIGVAVYAFEGV 161 (345)
Q Consensus 86 ~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~faf~~~ 161 (345)
..+ ....+-....+..|..+.+..+..+..+..+............++ .++.. ...++.++..++....|+|.|-
T Consensus 125 ~~~-i~~~~~~ln~~gvk~~~~i~~i~~~~~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~ 203 (435)
T PRK10435 125 CIA-IVWVFTFVNMLGGTWVSRLTTIGLVLVLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGV 203 (435)
T ss_pred HHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhH
Confidence 111 111122233344445555544443333222221111111110100 01111 1124567888999999999999
Q ss_pred eeeccchhhcccc-hhhhhhHHHHHHHHHHHHHHHhhhhhheec
Q 019141 162 GMILPLESETRNK-QRFGRILGWCMAFISLLYGSFGALGYFAFG 204 (345)
Q Consensus 162 ~~~~~i~~~m~~p-~~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG 204 (345)
.......+|+||| |+.+|++..+..++.++|.+.........+
T Consensus 204 E~~~~~a~E~knP~r~iPrAi~~~~~iv~ilYil~~~~~~~~~p 247 (435)
T PRK10435 204 ESAAVSTGMVKNPKRTVPLATMLGTGLAGIIYIAATQVISGMFP 247 (435)
T ss_pred HHHHHHHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999998 569999999999999999998876544443
No 26
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=98.77 E-value=1e-06 Score=84.97 Aligned_cols=186 Identities=10% Similarity=0.004 Sum_probs=100.6
Q ss_pred chhhhhhhcCCCCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHH
Q 019141 7 TRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYI 86 (345)
Q Consensus 7 c~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (345)
|+.++.++. |+....-+-+++.+|+...+++.....+.......+......+......+...++ + .....
T Consensus 59 ~~aEL~s~~--P~aGG~y~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~ 128 (445)
T PRK10644 59 VYAKMSSLD--PSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDP-----L---VLTIT 128 (445)
T ss_pred HHHHHHhhC--CCCCChhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc-----H---HHHHH
Confidence 445555543 3333333448889999999888877776554444444444444444443321111 0 01111
Q ss_pred HHHHHHHHhhcccCCCCchhhHHHHHHHHHHHHhhheeeeecc--cccccCCccc--cccCcchhhHHHhhhhhhhccee
Q 019141 87 WGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVM--ISMKQRPALK--AFGDFSVFSYGIGVAVYAFEGVG 162 (345)
Q Consensus 87 ~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~faf~~~~ 162 (345)
.+..+..+-..-.+..|..+.+..+.....+..+...+..... +.....+... ..+++.++..++....|+|.|-.
T Consensus 129 ~~~~~~~~~~ln~~gvk~~~~i~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e 208 (445)
T PRK10644 129 CVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVE 208 (445)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHH
Confidence 1111111222223344555555544433322222211111100 0000011111 11134456677888999999999
Q ss_pred eeccchhhcccch-hhhhhHHHHHHHHHHHHHHHhhhhhhe
Q 019141 163 MILPLESETRNKQ-RFGRILGWCMAFISLLYGSFGALGYFA 202 (345)
Q Consensus 163 ~~~~i~~~m~~p~-~~~~~~~~a~~i~~~~Y~~~g~~gy~~ 202 (345)
......+|+|||| +.+|++..+..++.++|.+....-...
T Consensus 209 ~~~~~aeE~k~P~r~iPrai~~s~~i~~v~Y~l~~~~~~~~ 249 (445)
T PRK10644 209 SASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSSTAIMGM 249 (445)
T ss_pred HHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999985 599999999999999999888764333
No 27
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=98.75 E-value=4.9e-07 Score=84.57 Aligned_cols=271 Identities=12% Similarity=0.125 Sum_probs=153.5
Q ss_pred CChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHHhhcccC
Q 019141 21 NSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIP 100 (345)
Q Consensus 21 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~ 100 (345)
.+..|..++.+||+...+.......+............+|.+....- ++ .+......... +..-....+
T Consensus 64 ~~~~~~~~~~~Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~------tp~~~~~l~~l-~~~~~~~~~ 132 (359)
T TIGR00912 64 KNFSEILSKYLGKILGRLLSILFILYFFLIAAYLIRIFADFIKTYLL----PR------TPIIVIIILII-IVSIYIVRK 132 (359)
T ss_pred CCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CC------CCHHHHHHHHH-HHHHHHHHc
Confidence 47999999999999988888877777666666555566666544321 11 11122211111 111123334
Q ss_pred CCCchhhHHHHHHHHHHHH-hhheeeeecccccccC-CccccccCcchhhHHH-hhhhhhhcceeeeccchhhcccchhh
Q 019141 101 TLTHLAPLSIFADIVDLGA-MGLVMVEDVMISMKQR-PALKAFGDFSVFSYGI-GVAVYAFEGVGMILPLESETRNKQRF 177 (345)
Q Consensus 101 ~l~~l~~~s~~~~~~~~~~-~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~faf~~~~~~~~i~~~m~~p~~~ 177 (345)
.++....++.+.....+.. +.++.....++...++ .+.. ..++.+...+. +...++|.+.........++|||||.
T Consensus 133 Gi~~i~r~~~i~~~~~i~~~~~il~~~~~~~~~~~~l~P~~-~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~ 211 (359)
T TIGR00912 133 GIEVLLRTAEILLIIFLILFILVLILLAPKLGNIKNLLPVL-ENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKI 211 (359)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHccCcc-ccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhh
Confidence 5666666655544433333 1222221112111111 1111 12444555544 37888998888888888899999999
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhheecCccccce----ec-----ccCCchHH---HHHHHHHHHHHHhhcccchhhHHH
Q 019141 178 GRILGWCMAFISLLYGSFGALGYFAFGEETKDII----TT-----NFGAGLVS---TLVNVGLCVNLFLTFPLMMNPVYE 245 (345)
Q Consensus 178 ~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~~~i----~~-----n~~~~~~~---~~~~~~~~i~~~~s~pl~~~p~~~ 245 (345)
+|+...+..++..+|...-......+|.+..++. .. +.+ +... ...-..-....+...-+..+....
T Consensus 212 ~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~-~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~ 290 (359)
T TIGR00912 212 KKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIG-DFIERFELIVMTFWVFIIFVKIAFYLYIAVK 290 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988888888885432221 11 111 1111 122223344556667777888888
Q ss_pred HHHhhhcccccchHHHHHHHHHHHHHHhhcCC-ccchhhhcc---hhhHHHHHHHHHHHHHHHHhc
Q 019141 246 VVERRFCDYRYCLWLRWAVVLGVSLVALLVPN-FADFLSLVG---SSVCCILGFVLPALFHLIVFK 307 (345)
Q Consensus 246 ~l~~~~~~~~~~~~~r~~~v~~~~~vA~~vp~-~~~i~~l~G---a~~~~~l~filP~l~~~~~~~ 307 (345)
.+++.++.++++...-.... ....++ ..|| .+. ..... ...+....+++|.++.+...-
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~P~ll~~i~~i 353 (359)
T TIGR00912 291 GLSKLFKKRKYSILILPVLM-VIFSIS-FFPDSSNQ-LFDYLEFLPIIAIVFFLLLPLILFIIVKI 353 (359)
T ss_pred HHHHHhCCCCcchhHHHHHH-HHHHHH-HccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887776643211111 222222 2454 332 22221 234456777899988776653
No 28
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.75 E-value=1.4e-06 Score=82.36 Aligned_cols=290 Identities=11% Similarity=0.083 Sum_probs=167.8
Q ss_pred chhhhhhhcCCC-CcCChhhhhHHhhccchhhHHHHHHHHHhhhhh-hhhHHhHHhh-HHHhhhccCCcccccccccchh
Q 019141 7 TRRKLETIHGFS-KINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFC-VSYLIFIANT-LTHMINNSTTSQTILGFLSPKA 83 (345)
Q Consensus 7 c~~~~~~~~~~~-~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~-v~y~i~~~~~-l~~~~~~~~~~~~~~~~~~~~~ 83 (345)
|+.++....+++ ++..| ...+||+...+...+.-.+-...+. ..+-+..++. +.+.++. .+.+ . ...+
T Consensus 66 cyaELGT~ipksGgd~ay---i~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~-c~~p----~-~~~~ 136 (479)
T KOG1287|consen 66 CYAELGTSIPKSGGDYAY---ISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPL-CDVP----R-VASK 136 (479)
T ss_pred HHHHHhccccCCCcchhh---HHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCC-CCCc----h-HHHH
Confidence 566666554432 23333 4567888766655555555444444 7778888887 6666662 1211 1 1112
Q ss_pred HHHHHHHHHHHhhcccCCCCchhhHHHHH---HHHHHHHhhheeeeeccc---cccc---CCccccc-cCcchhhHHHhh
Q 019141 84 LYIWGCFPFQLGLNSIPTLTHLAPLSIFA---DIVDLGAMGLVMVEDVMI---SMKQ---RPALKAF-GDFSVFSYGIGV 153 (345)
Q Consensus 84 ~~~~i~~~~~~pl~~~~~l~~l~~~s~~~---~~~~~~~~~~v~~~~~~~---~~~~---~~~~~~~-~~~~~~~~~~~~ 153 (345)
.... .++. +.-..+...+++.+.+- .++-+.++..+++-+... ...+ +++.+.. .+..++..++=.
T Consensus 137 lla~---~~l~-~lt~~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafys 212 (479)
T KOG1287|consen 137 LLAA---ALLV-LLTLINSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYS 212 (479)
T ss_pred HHHH---HHHH-HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHH
Confidence 2111 1111 12223444444444333 222222222222111110 1111 1111111 255567889999
Q ss_pred hhhhhcceeeeccchhhcccch-hhhhhHHHHHHHHHHHHHHHhhhhhheecC--cccccee-cccCC---chHHHHHHH
Q 019141 154 AVYAFEGVGMILPLESETRNKQ-RFGRILGWCMAFISLLYGSFGALGYFAFGE--ETKDIIT-TNFGA---GLVSTLVNV 226 (345)
Q Consensus 154 ~~faf~~~~~~~~i~~~m~~p~-~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~--~~~~~i~-~n~~~---~~~~~~~~~ 226 (345)
-.|+|.|=...=.+.+|+|||+ ++||++.+++.+++++|.++=+..+..-.. -.+++.. ..+.+ +.+...+..
T Consensus 213 glfa~~GWd~lN~vteEiknP~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~~~ip~ 292 (479)
T KOG1287|consen 213 GLFAFSGWDYLNYVTEEIKNPRRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFAWAIPF 292 (479)
T ss_pred hhhcccCchhhccchHhhcCccccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchHHHHHH
Confidence 9999999999999999999985 599999999999999999987755444321 1122211 11222 122366667
Q ss_pred HHHHHHHhhcccchhhHHHHHHhhhccc----------ccch--HHHHHHHHHHHHHHhhcCCccchhhhcchhhHHHHH
Q 019141 227 GLCVNLFLTFPLMMNPVYEVVERRFCDY----------RYCL--WLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILG 294 (345)
Q Consensus 227 ~~~i~~~~s~pl~~~p~~~~l~~~~~~~----------~~~~--~~r~~~v~~~~~vA~~vp~~~~i~~l~Ga~~~~~l~ 294 (345)
+.+++.+.+.--.++...+.+...-++. +++. +...+......++....+|++.+++.++=.-.....
T Consensus 293 ~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~ 372 (479)
T KOG1287|consen 293 SVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRG 372 (479)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766665554432 1221 233344445556666778999999999888888888
Q ss_pred HHHHHHHHHHHhccc
Q 019141 295 FVLPALFHLIVFKQE 309 (345)
Q Consensus 295 filP~l~~~~~~~~~ 309 (345)
+..=+++++|.++++
T Consensus 373 l~~~gll~lR~k~p~ 387 (479)
T KOG1287|consen 373 LSMAGLLWLRWKHPP 387 (479)
T ss_pred HHHHHHHHHHhhCCC
Confidence 888999999988754
No 29
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=98.72 E-value=2.8e-06 Score=82.61 Aligned_cols=179 Identities=13% Similarity=0.072 Sum_probs=104.1
Q ss_pred cchhhhhhhcCCC-CcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhH
Q 019141 6 HTRRKLETIHGFS-KINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKAL 84 (345)
Q Consensus 6 ~c~~~~~~~~~~~-~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (345)
.|+.++..+. + ....|.+.+++.+|+...+++.....+.......+.....+..+....+ . .+...
T Consensus 54 ~~~aEl~s~~--P~~gG~~~~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~----~-------~~~~~ 120 (478)
T TIGR00913 54 QSLGEMATFY--PVVSGSFATYASRFVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTD----K-------VNPAV 120 (478)
T ss_pred HHHHHHHHhC--CCCCCCHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----C-------CCHHH
Confidence 4556666553 3 2336778899999999999999988887777777777666666543322 1 11112
Q ss_pred HHHHHHHHHHhhcccCCCCchhhHHHHHHHHHH----HHhh--heee-eeccccc----c---cCCccccc---cCcchh
Q 019141 85 YIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDL----GAMG--LVMV-EDVMISM----K---QRPALKAF---GDFSVF 147 (345)
Q Consensus 85 ~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~----~~~~--~v~~-~~~~~~~----~---~~~~~~~~---~~~~~~ 147 (345)
+..+...+ .-+.-.+..|..+.+........+ ..++ +... ...++.. . +++..... +.+.++
T Consensus 121 ~~~~~~~~-~~~in~~gv~~~~~~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (478)
T TIGR00913 121 WIAIFYVF-IVIINLFGVKGYGEAEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGV 199 (478)
T ss_pred HHHHHHHH-HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHH
Confidence 22211111 112233445555544433321111 1111 1111 1111100 0 00111110 124567
Q ss_pred hHHHhhhhhhhcceeeeccchhhcccch-hhhhhHHHHHHHHHHHHHHHhhh
Q 019141 148 SYGIGVAVYAFEGVGMILPLESETRNKQ-RFGRILGWCMAFISLLYGSFGAL 198 (345)
Q Consensus 148 ~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~~a~~i~~~~Y~~~g~~ 198 (345)
..++....|+|.|-.......+|+|||+ +.+|++..+..+..++|.+....
T Consensus 200 ~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 200 CSVFVTAAFSFGGTELVALTAGEAANPRKSIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHHhhhccHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888889999999999999999999985 58999999999999999987543
No 30
>PRK10249 phenylalanine transporter; Provisional
Probab=98.71 E-value=1.6e-06 Score=83.87 Aligned_cols=287 Identities=13% Similarity=0.125 Sum_probs=143.9
Q ss_pred ecchhhhhhhcCCCCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhH
Q 019141 5 VHTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKAL 84 (345)
Q Consensus 5 ~~c~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (345)
..|+.++..+ .++.....+.+++.+|+...+++.....+.......+.....+..+....++ .+...
T Consensus 71 ~~~~aEl~~~--~P~~Gg~~~y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~ 137 (458)
T PRK10249 71 MRQLGEMVVE--EPVSGSFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPD-----------VPTWI 137 (458)
T ss_pred HHHHHHHHHh--CCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-----------CcHHH
Confidence 3455666655 3456677778999999999999999877766655555555555555433321 11112
Q ss_pred HHHHHHHHHHhhcccCCCCchhhHHHHHHHHH----HHH--hhhee-eeecccc---ccc-CCccc-cccCcchhhHHHh
Q 019141 85 YIWGCFPFQLGLNSIPTLTHLAPLSIFADIVD----LGA--MGLVM-VEDVMIS---MKQ-RPALK-AFGDFSVFSYGIG 152 (345)
Q Consensus 85 ~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~----~~~--~~~v~-~~~~~~~---~~~-~~~~~-~~~~~~~~~~~~~ 152 (345)
+..+...+ +-..-.+..+..+.+........ +.. +.+.. ....+.. .++ .++-. ..+++.++..++.
T Consensus 138 ~~~~~~~l-~~~lN~~gv~~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (458)
T PRK10249 138 WAAAFFII-INAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLA 216 (458)
T ss_pred HHHHHHHH-HHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHH
Confidence 22111111 11122233444433332221111 111 11111 1111100 000 00000 0124556788999
Q ss_pred hhhhhhcceeeeccchhhcccchh-hhhhHHHHHHHHHHHHHHHhhhhhheecCcc----cccee---cccCCchHHHHH
Q 019141 153 VAVYAFEGVGMILPLESETRNKQR-FGRILGWCMAFISLLYGSFGALGYFAFGEET----KDIIT---TNFGAGLVSTLV 224 (345)
Q Consensus 153 ~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~----~~~i~---~n~~~~~~~~~~ 224 (345)
...|+|.|-.......+|+|||+| .||++..+.....+.|......-....+++. +++.. .+.+.++.....
T Consensus 217 ~~~~af~G~e~~~~~a~E~~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 296 (458)
T PRK10249 217 VIMFSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASAL 296 (458)
T ss_pred HHHHHHcCHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHH
Confidence 999999999999999999999855 8999999999999999775444333333211 11111 111112333334
Q ss_pred HHHHHHHHHhhcccchhhHHHHHHhhhccc----------cc--chH---HHHHHHHHHHHHHhhcCC--ccchhhhcch
Q 019141 225 NVGLCVNLFLTFPLMMNPVYEVVERRFCDY----------RY--CLW---LRWAVVLGVSLVALLVPN--FADFLSLVGS 287 (345)
Q Consensus 225 ~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~----------~~--~~~---~r~~~v~~~~~vA~~vp~--~~~i~~l~Ga 287 (345)
.....+..+.+..-......+.+...-+++ |+ +.. ....+..+..++....|+ ++.+.++ +
T Consensus 297 ~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~--~ 374 (458)
T PRK10249 297 NFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTRVSRRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMAL--V 374 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH--H
Confidence 444444444444333334444443333221 11 111 111111111122222332 4445554 3
Q ss_pred hhHHHHHHHHHHHHHHHHhc
Q 019141 288 SVCCILGFVLPALFHLIVFK 307 (345)
Q Consensus 288 ~~~~~l~filP~l~~~~~~~ 307 (345)
.....+.|++|++.+++.||
T Consensus 375 ~~~~~i~y~~~~~~~l~~r~ 394 (458)
T PRK10249 375 VATLLLNWIMICLAHLRFRA 394 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44677999999999999875
No 31
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=98.71 E-value=2.7e-06 Score=81.94 Aligned_cols=287 Identities=9% Similarity=0.017 Sum_probs=149.3
Q ss_pred ecchhhhhhhcCCCCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhH
Q 019141 5 VHTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKAL 84 (345)
Q Consensus 5 ~~c~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (345)
..|+-++..+ .|+....-+.+++.+|++..+.+.....+.............+..+.... +. .+...
T Consensus 42 al~~aEL~s~--~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~----~~-------~~~~~ 108 (446)
T PRK10197 42 MRMLAEMAVA--TPDTGSFSTYADKAIGRWAGYTIGWLYWWFWVLVIPLEANIAAMILHSWV----PG-------IPIWL 108 (446)
T ss_pred HHHHHHHHHh--CCCCCCHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cc-------CcHHH
Confidence 3455666655 34566777888999999999999988887665555544444443332221 11 11122
Q ss_pred HHHHHHHHHHhhcccCCCCchhhHHHHHHHHHHHHhhh------eeeeecc-ccccc-----CCccc-cccCcchhhHHH
Q 019141 85 YIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGL------VMVEDVM-ISMKQ-----RPALK-AFGDFSVFSYGI 151 (345)
Q Consensus 85 ~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~------v~~~~~~-~~~~~-----~~~~~-~~~~~~~~~~~~ 151 (345)
+..+...+.. +.-....|..+.+..+.....+...+. ....... ..... .++-. ..+.+.++..++
T Consensus 109 ~~~~~l~~~~-~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~ 187 (446)
T PRK10197 109 FSLVITLALT-GSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAM 187 (446)
T ss_pred HHHHHHHHHH-HHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHH
Confidence 2221111111 122333444444333332211111111 1111110 00000 00000 012345788999
Q ss_pred hhhhhhhcceeeeccchhhcccchh-hhhhHHHHHHHHHHHHHHHhhhhhheecCcc-c----c---ceecccCCchHHH
Q 019141 152 GVAVYAFEGVGMILPLESETRNKQR-FGRILGWCMAFISLLYGSFGALGYFAFGEET-K----D---IITTNFGAGLVST 222 (345)
Q Consensus 152 ~~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~-~----~---~i~~n~~~~~~~~ 222 (345)
....|+|.|-..+....+|+||||| .+|++..+.....++|....+.-....+.+. + + ......+..+...
T Consensus 188 ~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ 267 (446)
T PRK10197 188 LITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKL 267 (446)
T ss_pred HHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHH
Confidence 9999999999999999999999865 8999999999999999986655333322211 1 1 1122223233445
Q ss_pred HHHHHHHHHHHhhcccchhhHHHHHHhhhcccc----------cchHHHHHHH-----HHHHHHHhhcC--Cccchhhhc
Q 019141 223 LVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYR----------YCLWLRWAVV-----LGVSLVALLVP--NFADFLSLV 285 (345)
Q Consensus 223 ~~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~----------~~~~~r~~~v-----~~~~~vA~~vp--~~~~i~~l~ 285 (345)
+......++.+.+..-..+...+.+...-+++. ++.-.+..+. ++..+.....| .++.++++.
T Consensus 268 ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~ 347 (446)
T PRK10197 268 IMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSS 347 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 555555666666665556666666554443321 1100111111 11111112223 356666664
Q ss_pred chhhHHHHHHHHHHHHHHHHhc
Q 019141 286 GSSVCCILGFVLPALFHLIVFK 307 (345)
Q Consensus 286 Ga~~~~~l~filP~l~~~~~~~ 307 (345)
+ ....+.|.++++.+++.||
T Consensus 348 ~--~~~li~y~~~~~a~i~lr~ 367 (446)
T PRK10197 348 G--AIALLVYLVIAVSQLRMRK 367 (446)
T ss_pred H--HHHHHHHHHHHHHHHHHHH
Confidence 3 3444889999999988876
No 32
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=98.67 E-value=2.1e-06 Score=82.74 Aligned_cols=56 Identities=20% Similarity=0.306 Sum_probs=49.0
Q ss_pred cchhhHHHhhhhhhhcceeeeccchhhcccch-hhhhhHHHHHHHHHHHHHHHhhhh
Q 019141 144 FSVFSYGIGVAVYAFEGVGMILPLESETRNKQ-RFGRILGWCMAFISLLYGSFGALG 199 (345)
Q Consensus 144 ~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~~a~~i~~~~Y~~~g~~g 199 (345)
+.++..+++...|+|.|-.......+|+|||| +.+|++..+..++.++|.+.....
T Consensus 194 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~~~~i~~~~Y~l~~~~~ 250 (445)
T PRK11357 194 FMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLVLVLYTLLALVI 250 (445)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788899999999999999999999985 589999999999999998876643
No 33
>PRK10238 aromatic amino acid transporter; Provisional
Probab=98.63 E-value=2.9e-06 Score=81.96 Aligned_cols=286 Identities=11% Similarity=0.079 Sum_probs=146.2
Q ss_pred cchhhhhhhcCCCCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHH
Q 019141 6 HTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALY 85 (345)
Q Consensus 6 ~c~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 85 (345)
.|..++..+ .|....+.+.+++.+|+...+++.....+.......+.....++.++...++ . ++..+
T Consensus 63 ~s~aEl~s~--~P~aGg~y~~~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~---~--------~~~~~ 129 (456)
T PRK10238 63 RQLGEMVVE--EPVAGSFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE---I--------PTWVS 129 (456)
T ss_pred HHHHHHHHh--cCCCCCHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---C--------cHHHH
Confidence 345555554 3455677777889999999999999998888888887777777776544321 1 11222
Q ss_pred HHHHHHHHHhhcccCCCCchhhHHHHHHHHHHHH----hh--hee-eeecccc---ccc-CCcccc-ccCcchhhHHHhh
Q 019141 86 IWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGA----MG--LVM-VEDVMIS---MKQ-RPALKA-FGDFSVFSYGIGV 153 (345)
Q Consensus 86 ~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~----~~--~v~-~~~~~~~---~~~-~~~~~~-~~~~~~~~~~~~~ 153 (345)
..+...+.. ..-....|..+.+........+.. ++ +.. ....... ..+ .+.-.+ .+.+.++..+++.
T Consensus 130 ~~i~~~~~~-~lN~~gv~~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 208 (456)
T PRK10238 130 AAVFFVVIN-AINLTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAI 208 (456)
T ss_pred HHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHH
Confidence 221111111 111222333333333222221111 11 111 1110100 000 000001 1123456677888
Q ss_pred hhhhhcceeeeccchhhcccch-hhhhhHHHHHHHHHHHHHHHhhhhh--heecCc--cccce---ecccCCchHHHHHH
Q 019141 154 AVYAFEGVGMILPLESETRNKQ-RFGRILGWCMAFISLLYGSFGALGY--FAFGEE--TKDII---TTNFGAGLVSTLVN 225 (345)
Q Consensus 154 ~~faf~~~~~~~~i~~~m~~p~-~~~~~~~~a~~i~~~~Y~~~g~~gy--~~fG~~--~~~~i---~~n~~~~~~~~~~~ 225 (345)
..|+|.|-.......+|+|||+ +.||++..+.....+.|...-.... ....+- ..++. ..+.+..+...+.+
T Consensus 209 ~~~af~G~e~~~~~aeE~knP~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~ 288 (456)
T PRK10238 209 IMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALN 288 (456)
T ss_pred HHHHhcCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHH
Confidence 9999999999999999999985 4899998777777777765433211 111111 11111 12222223334445
Q ss_pred HHHHHHHHhhcccchhhHHHHHHhhhcccc------------cchHHHHHHHHHHHHHHh---hcCC--ccchhhhcchh
Q 019141 226 VGLCVNLFLTFPLMMNPVYEVVERRFCDYR------------YCLWLRWAVVLGVSLVAL---LVPN--FADFLSLVGSS 288 (345)
Q Consensus 226 ~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~------------~~~~~r~~~v~~~~~vA~---~vp~--~~~i~~l~Ga~ 288 (345)
....++.+.+..-..+...+.+...-+++. .+...-....+++.+... ..|+ ++.+.++ +.
T Consensus 289 ~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP~~f~kv~~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~--~~ 366 (456)
T PRK10238 289 IVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFGLLMAL--VV 366 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH--HH
Confidence 555555555444445555555544433221 111111111111211111 2232 5556665 34
Q ss_pred hHHHHHHHHHHHHHHHHhc
Q 019141 289 VCCILGFVLPALFHLIVFK 307 (345)
Q Consensus 289 ~~~~l~filP~l~~~~~~~ 307 (345)
.+..+.|.+|.+.+++.||
T Consensus 367 ~~~~i~y~~~~~~~l~~r~ 385 (456)
T PRK10238 367 SALVINWAMISLAHMKFRR 385 (456)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5667899999999999886
No 34
>PRK15049 L-asparagine permease; Provisional
Probab=98.62 E-value=3.9e-06 Score=81.96 Aligned_cols=160 Identities=14% Similarity=0.125 Sum_probs=94.4
Q ss_pred hhhHHHhhhhhhhcceeeeccchhhcccchh-hhhhHHHHHHHHHHHHHHHhhhhhheecCc-c---ccce---ecccCC
Q 019141 146 VFSYGIGVAVYAFEGVGMILPLESETRNKQR-FGRILGWCMAFISLLYGSFGALGYFAFGEE-T---KDII---TTNFGA 217 (345)
Q Consensus 146 ~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~-~---~~~i---~~n~~~ 217 (345)
.+..++....|+|.|-..+....+|+|||+| .+|++..+.....++|...........+.+ . +++. ....+.
T Consensus 221 ~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~ 300 (499)
T PRK15049 221 PALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGV 300 (499)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCc
Confidence 3455566789999999999999999999865 999999888888888887665444333321 1 1111 111222
Q ss_pred chHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhccc----------cc--chH---HHHHHHHHHHHHHhhcCC--ccc
Q 019141 218 GLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDY----------RY--CLW---LRWAVVLGVSLVALLVPN--FAD 280 (345)
Q Consensus 218 ~~~~~~~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~----------~~--~~~---~r~~~v~~~~~vA~~vp~--~~~ 280 (345)
.+...+..+...++.+.+.--..+...+.+...-+++ |+ +.. ...++.++..++....|+ ++.
T Consensus 301 ~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP~~f~kv~k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~ 380 (499)
T PRK15049 301 PYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEI 380 (499)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 2334555555666666555555555555554443321 11 111 111111111112222332 555
Q ss_pred hhhhcchhhHHHHHHHHHHHHHHHHhc
Q 019141 281 FLSLVGSSVCCILGFVLPALFHLIVFK 307 (345)
Q Consensus 281 i~~l~Ga~~~~~l~filP~l~~~~~~~ 307 (345)
++++ +..+..+.|.+|.+.+++.||
T Consensus 381 l~~~--~~~~~li~y~~~~~~~l~~R~ 405 (499)
T PRK15049 381 VLNF--ASLGIIASWAFIIVCQMRLRK 405 (499)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 6666 466778999999999999876
No 35
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=98.61 E-value=1.1e-05 Score=77.86 Aligned_cols=185 Identities=12% Similarity=0.023 Sum_probs=106.1
Q ss_pred cchhhhhhhcCCCCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHH
Q 019141 6 HTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALY 85 (345)
Q Consensus 6 ~c~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 85 (345)
.|+.++..+ .++.....+.+++.+|++..+++.....+.....+.+.....++.+....++ .+...+
T Consensus 63 ~~~aEl~s~--~P~~Gg~~~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~ 129 (452)
T TIGR01773 63 RMLGEMAVA--NPDTGSFSTYADDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD-----------IPLWLF 129 (452)
T ss_pred HHHHHHHHh--cCCCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----------CcHHHH
Confidence 455566554 3455667788999999999999998888877777777766777666654332 111222
Q ss_pred HHHHHHHHHhhcccCCCCchhhHHHHHHHHHHHH----hhhee--ee-eccccccc-CCcc----cc-ccCcchhhHHHh
Q 019141 86 IWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGA----MGLVM--VE-DVMISMKQ-RPAL----KA-FGDFSVFSYGIG 152 (345)
Q Consensus 86 ~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~----~~~v~--~~-~~~~~~~~-~~~~----~~-~~~~~~~~~~~~ 152 (345)
..+...+ .-..-.+..+..+.+.....+..+.. ++..+ .. ..+..... ..+. .. .+.+.++..++.
T Consensus 130 ~~~~~~~-~~~~n~~gv~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~ 208 (452)
T TIGR01773 130 SLILTIV-LTLTNLYSVKSYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAIL 208 (452)
T ss_pred HHHHHHH-HHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHH
Confidence 1111111 11222234444444443322221111 11111 11 00100000 0000 01 113346888999
Q ss_pred hhhhhhcceeeeccchhhcccch-hhhhhHHHHHHHHHHHHHHHhhhhhheec
Q 019141 153 VAVYAFEGVGMILPLESETRNKQ-RFGRILGWCMAFISLLYGSFGALGYFAFG 204 (345)
Q Consensus 153 ~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG 204 (345)
...|+|.|-.......+|+|||+ +.||++..+......+|...........+
T Consensus 209 ~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p 261 (452)
T TIGR01773 209 VTMFSFMGTEIVTIAAAESSNPIKSITRATNSVIWRIIVFYLGSIFIVVALLP 261 (452)
T ss_pred HHHHHhccHHHHhHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeC
Confidence 99999999999999999999985 59999988888888888886554443333
No 36
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.59 E-value=1.2e-05 Score=78.25 Aligned_cols=52 Identities=10% Similarity=-0.026 Sum_probs=43.1
Q ss_pred hhhhhhcceeeeccchhhcccch-hhhhhHHHHHHHHHHHHHHHhhhhhheec
Q 019141 153 VAVYAFEGVGMILPLESETRNKQ-RFGRILGWCMAFISLLYGSFGALGYFAFG 204 (345)
Q Consensus 153 ~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG 204 (345)
.+.++|.|-.......+|+|||| +.+|++..+..++.++|.+....-...-+
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 45789999999999999999985 59999999999999999886655444434
No 37
>PRK11387 S-methylmethionine transporter; Provisional
Probab=98.58 E-value=1.2e-05 Score=78.00 Aligned_cols=231 Identities=10% Similarity=-0.002 Sum_probs=115.7
Q ss_pred cchhhhhhhcCCCCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHH
Q 019141 6 HTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALY 85 (345)
Q Consensus 6 ~c~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 85 (345)
-|+-++..+ .++...+-+..++.+|+...+++.+...+.............+..+....+ . .+...+
T Consensus 66 ~~~aELas~--~P~aGG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p----~-------~~~~~~ 132 (471)
T PRK11387 66 QCLGELSVA--MPETGAFHVYAARYLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFP----Q-------VPVWPW 132 (471)
T ss_pred HHHHHHHHH--cCCCCCHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----c-------CcHHHH
Confidence 355566555 345555667889999999988888888777655554444444433322211 1 011111
Q ss_pred HHHHHHHHHhhcccCCCCchhhHHHHHHHH----HHHHhhhee--eee-cc----cccccCCcc---cccc-CcchhhHH
Q 019141 86 IWGCFPFQLGLNSIPTLTHLAPLSIFADIV----DLGAMGLVM--VED-VM----ISMKQRPAL---KAFG-DFSVFSYG 150 (345)
Q Consensus 86 ~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~----~~~~~~~v~--~~~-~~----~~~~~~~~~---~~~~-~~~~~~~~ 150 (345)
..+..++.. ....+..|..+......... .+..++..+ ... .. +..+..++. .+.+ ...++..+
T Consensus 133 ~~~~~~~~~-~in~~gvk~~~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 211 (471)
T PRK11387 133 CLLFCALIF-GLNVVSTRFFAEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMT 211 (471)
T ss_pred HHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHH
Confidence 111111111 22223344444333222111 111111100 000 00 000000111 1111 22346777
Q ss_pred Hhhhhhhhcceeeeccchhhcccchh-hhhhHHHHHHHHHHHHHHHhhhhhheecCc-c---ccce---ecccCCchHHH
Q 019141 151 IGVAVYAFEGVGMILPLESETRNKQR-FGRILGWCMAFISLLYGSFGALGYFAFGEE-T---KDII---TTNFGAGLVST 222 (345)
Q Consensus 151 ~~~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~-~---~~~i---~~n~~~~~~~~ 222 (345)
.....|+|.|-..+...-+|+||||| .+|++..+..+..++|.......-...+.+ . +++. ..+.+..+...
T Consensus 212 ~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ 291 (471)
T PRK11387 212 MVAVNFAFSGTELIGIAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAAD 291 (471)
T ss_pred HHHHHHHHcCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHH
Confidence 78889999999999999999999855 899999999999999998776543333322 1 1111 11222223344
Q ss_pred HHHHHHHHHHHhhcccchhhHHHHHHhh
Q 019141 223 LVNVGLCVNLFLTFPLMMNPVYEVVERR 250 (345)
Q Consensus 223 ~~~~~~~i~~~~s~pl~~~p~~~~l~~~ 250 (345)
+..+...++.+.+.--..+...+.+...
T Consensus 292 ii~~~~~~s~~~~~~~~~~~~sR~l~a~ 319 (471)
T PRK11387 292 IFNFVILTAILSAANSGLYASGRMLWSL 319 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455555555544444444444444333
No 38
>TIGR00930 2a30 K-Cl cotransporter.
Probab=98.56 E-value=1.1e-05 Score=83.98 Aligned_cols=171 Identities=11% Similarity=0.049 Sum_probs=103.4
Q ss_pred hhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHHhhcccCCCCch
Q 019141 26 LGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHL 105 (345)
Q Consensus 26 l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 105 (345)
+.++++|+.....+.++..+.+...+..|.+..++.+..++..........+ ..+.+.+..+..++ +-.......+..
T Consensus 148 yisralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~-~~~~~iia~i~l~l-l~~In~~Gvk~~ 225 (953)
T TIGR00930 148 LISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDP-INDIRIYGTVTVVV-LLGISFAGMEWE 225 (953)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCc-cccchHHHHHHHHH-HHHHHHhhHHHH
Confidence 4677889988888888888888888999999999998888753211000001 11223332222222 222333455555
Q ss_pred hhHHHHHHHHHHHHhhheeeeeccccc-c------c------CCc-cccccCc-chhhHHHhhhhhhhcceeeeccchhh
Q 019141 106 APLSIFADIVDLGAMGLVMVEDVMISM-K------Q------RPA-LKAFGDF-SVFSYGIGVAVYAFEGVGMILPLESE 170 (345)
Q Consensus 106 ~~~s~~~~~~~~~~~~~v~~~~~~~~~-~------~------~~~-~~~~~~~-~~~~~~~~~~~faf~~~~~~~~i~~~ 170 (345)
+.+..+..+..+..++.+++....... + . ..+ .+.+++. .++...++++++||.|-.....+-.|
T Consensus 226 ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgE 305 (953)
T TIGR00930 226 NKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGD 305 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555554444433333222221111000 0 0 000 0111112 23778888888999998888899999
Q ss_pred cccch-hhhhhHHHHHHHHHHHHHHHhhh
Q 019141 171 TRNKQ-RFGRILGWCMAFISLLYGSFGAL 198 (345)
Q Consensus 171 m~~p~-~~~~~~~~a~~i~~~~Y~~~g~~ 198 (345)
+|||+ +.+|++..+..+++++|+++.+.
T Consensus 306 lKnP~r~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 306 LKDPQKAIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred ccChhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99985 49999999999999999998763
No 39
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=98.56 E-value=1.4e-05 Score=77.46 Aligned_cols=278 Identities=14% Similarity=0.099 Sum_probs=136.0
Q ss_pred CcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHHhhcc
Q 019141 19 KINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNS 98 (345)
Q Consensus 19 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~ 98 (345)
+..++.+.+++.+|+...+++.............+.....+..+....+. . ....+..+...+ +-..-
T Consensus 82 ~~~~~~~ya~~~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~---~--------~~~~~~~~~~~~-~~~iN 149 (469)
T PRK11049 82 EYKSFSDFASDLLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPD---L--------SDWVASLAVVLL-LLSLN 149 (469)
T ss_pred CCCcHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---C--------cHHHHHHHHHHH-HHHHH
Confidence 34456688999999999999999988776555555555555555443321 1 111111111111 11122
Q ss_pred cCCCCchhhHHHHHHHHHHHHhh------heeeee-c--cccc----cc-CCccccc-cCcchhhHHHhhhhhhhcceee
Q 019141 99 IPTLTHLAPLSIFADIVDLGAMG------LVMVED-V--MISM----KQ-RPALKAF-GDFSVFSYGIGVAVYAFEGVGM 163 (345)
Q Consensus 99 ~~~l~~l~~~s~~~~~~~~~~~~------~v~~~~-~--~~~~----~~-~~~~~~~-~~~~~~~~~~~~~~faf~~~~~ 163 (345)
....+..+.+..+.....+..++ ...... . ++.. .+ .++-..+ ..+.++..++....|+|.|-..
T Consensus 150 ~~g~~~~~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~ 229 (469)
T PRK11049 150 LATVKMFGEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIEL 229 (469)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHH
Confidence 23344444444332222111111 111110 0 0000 00 0000011 1344688899999999999999
Q ss_pred eccchhhcccchh-hhhhHHHHHHHHHHHHHHHhhhhhheecCc-c---cccee---cccCCchHHHHHHHHHHHHHHhh
Q 019141 164 ILPLESETRNKQR-FGRILGWCMAFISLLYGSFGALGYFAFGEE-T---KDIIT---TNFGAGLVSTLVNVGLCVNLFLT 235 (345)
Q Consensus 164 ~~~i~~~m~~p~~-~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~-~---~~~i~---~n~~~~~~~~~~~~~~~i~~~~s 235 (345)
+....+|+|||+| .+|+...+.....+.|.+........-+.+ . +++.. ...+..+...+..+...++.+.+
T Consensus 230 ~~~~a~E~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~ 309 (469)
T PRK11049 230 VGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASS 309 (469)
T ss_pred HHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHH
Confidence 9999999999865 899998777777777876665443322211 1 01111 11111233344444444444443
Q ss_pred cccchhhHHHHHHhhhccc----------ccchHHHHHHH-----HHHHHHHhhcCCccchhhhcc--hhhHHHHHHHHH
Q 019141 236 FPLMMNPVYEVVERRFCDY----------RYCLWLRWAVV-----LGVSLVALLVPNFADFLSLVG--SSVCCILGFVLP 298 (345)
Q Consensus 236 ~pl~~~p~~~~l~~~~~~~----------~~~~~~r~~~v-----~~~~~vA~~vp~~~~i~~l~G--a~~~~~l~filP 298 (345)
.--......+.+...-+++ |++.-.+..++ .+...+....|+....++.+- +.....+.++++
T Consensus 310 ~~~~~~~~sR~l~a~ardg~lP~~~~kv~~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~ 389 (469)
T PRK11049 310 ANSGVFSTSRMLFGLAQEGVAPKAFAKLSKRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTII 389 (469)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333332221 11110111111 111222334566444444332 233455788899
Q ss_pred HHHHHHHhcc
Q 019141 299 ALFHLIVFKQ 308 (345)
Q Consensus 299 ~l~~~~~~~~ 308 (345)
.+.+++.||+
T Consensus 390 ~~a~~~lr~~ 399 (469)
T PRK11049 390 LCSYLVYRKQ 399 (469)
T ss_pred HHHHHHHHHh
Confidence 9998888763
No 40
>PRK10580 proY putative proline-specific permease; Provisional
Probab=98.53 E-value=3.6e-05 Score=74.46 Aligned_cols=180 Identities=7% Similarity=0.060 Sum_probs=97.5
Q ss_pred cchhhhhhhcCCCCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHH
Q 019141 6 HTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALY 85 (345)
Q Consensus 6 ~c~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 85 (345)
.|..++..+ .++....-+.+++.+|+...+++.+...+.............+..+....++ .+...+
T Consensus 60 ~~~aEl~s~--~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 126 (457)
T PRK10580 60 RALGEMSVH--NPAASSFSRYAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPT-----------VPHWIW 126 (457)
T ss_pred HHHHHHHHH--cCCCCCHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------CChHHH
Confidence 355566554 3445555667899999999999998877665554544444455444433221 111222
Q ss_pred HHHHHHHHHhhcccCCCCchhhHHHHHHHHHHHHhh--------heeeeecc--ccc--cc-CCc-cccccCcchhhHHH
Q 019141 86 IWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMG--------LVMVEDVM--ISM--KQ-RPA-LKAFGDFSVFSYGI 151 (345)
Q Consensus 86 ~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~--------~v~~~~~~--~~~--~~-~~~-~~~~~~~~~~~~~~ 151 (345)
.+...++ .-....+..|..+.+........+..+. ........ +.. ++ .++ -.....+.++..++
T Consensus 127 ~~~~~~l-~~~ln~~gv~~~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 205 (457)
T PRK10580 127 VLSVVLI-ICAVNLMSVKVFGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSL 205 (457)
T ss_pred HHHHHHH-HHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHH
Confidence 2222211 1222333445444444322221111110 01111000 000 00 000 00111344677788
Q ss_pred hhhhhhhcceeeeccchhhcccchh-hhhhHHHHHHHHHHHHHHHhhhh
Q 019141 152 GVAVYAFEGVGMILPLESETRNKQR-FGRILGWCMAFISLLYGSFGALG 199 (345)
Q Consensus 152 ~~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~~a~~i~~~~Y~~~g~~g 199 (345)
....|+|.|........+|+|||+| .+|++..+.....++|.......
T Consensus 206 ~~~~fsf~G~e~~~~~a~E~knP~k~iPrAi~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 206 QMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVI 254 (457)
T ss_pred HHHHHHHhCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999865 89998888877788887765443
No 41
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=98.48 E-value=1.8e-05 Score=77.40 Aligned_cols=61 Identities=10% Similarity=0.135 Sum_probs=51.5
Q ss_pred CcchhhHHHhhhhhhhcceeeeccchhhcccch-hhhhhHHHHHHHHHHHHHHHhhhhhhee
Q 019141 143 DFSVFSYGIGVAVYAFEGVGMILPLESETRNKQ-RFGRILGWCMAFISLLYGSFGALGYFAF 203 (345)
Q Consensus 143 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~~a~~i~~~~Y~~~g~~gy~~f 203 (345)
+..++..++....|+|.|-.......+|+|||+ +.+|++..+..+..++|.+....-....
T Consensus 233 ~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~ 294 (501)
T TIGR00911 233 SAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVL 294 (501)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345677889999999999999999999999985 5899999999999999999865543333
No 42
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=98.47 E-value=4.3e-06 Score=78.04 Aligned_cols=278 Identities=13% Similarity=0.152 Sum_probs=164.9
Q ss_pred CCCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHH--HHHHHHH
Q 019141 17 FSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIW--GCFPFQL 94 (345)
Q Consensus 17 ~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~ 94 (345)
++...++.|.+++.+|+++.+++...-...-...+++-+..++..+...+++. + ...+.+ +..+...
T Consensus 73 ~p~~gSF~~~a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v--P---------~Wv~al~~~~l~~~~ 141 (462)
T COG1113 73 NPVSGSFSDYARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV--P---------QWVFALAAVVLLLAV 141 (462)
T ss_pred CCCCCcHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--c---------HHHHHHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999998887777653 2 122221 1222223
Q ss_pred hhcccCCCCchhhHHHHHHHH---HHHHhhheeeee-ccccc--ccCCcccc----c-cCcchhhHHHhhhhhhhcceee
Q 019141 95 GLNSIPTLTHLAPLSIFADIV---DLGAMGLVMVED-VMISM--KQRPALKA----F-GDFSVFSYGIGVAVYAFEGVGM 163 (345)
Q Consensus 95 pl~~~~~l~~l~~~s~~~~~~---~~~~~~~v~~~~-~~~~~--~~~~~~~~----~-~~~~~~~~~~~~~~faf~~~~~ 163 (345)
=+..+|...++.++-.+--+. .++.+...+... .+... ..-+++.. + +.+.++..++-..+|||++-..
T Consensus 142 NL~sVk~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiEl 221 (462)
T COG1113 142 NLISVKVFGELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIEL 221 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHH
Confidence 455677777777654322222 222222222211 11111 01111111 1 3566889999999999999988
Q ss_pred eccchhhcccchh-hhhhHH-----HHHHHHHHHHHHHhhhhhheecCcccccee--cccCCchHHHHHHHHHHHHHHhh
Q 019141 164 ILPLESETRNKQR-FGRILG-----WCMAFISLLYGSFGALGYFAFGEETKDIIT--TNFGAGLVSTLVNVGLCVNLFLT 235 (345)
Q Consensus 164 ~~~i~~~m~~p~~-~~~~~~-----~a~~i~~~~Y~~~g~~gy~~fG~~~~~~i~--~n~~~~~~~~~~~~~~~i~~~~s 235 (345)
+--...|-|||+| .+|+.. +...-...+..++.+.-+-.++++.++-+. ...+-.....+.+.....+.+.+
T Consensus 222 vGitA~Et~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~ 301 (462)
T COG1113 222 VGITAAEAKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSA 301 (462)
T ss_pred HHHHHHhhcChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhc
Confidence 8888899999966 566544 333334444455666666666665444332 23332233344444444444455
Q ss_pred cccchhhHHHHHHhhhccc----------cc--c---hHHHHHHHHHHHHHHhhcCCccchhhhcc--hhhHHHHHHHHH
Q 019141 236 FPLMMNPVYEVVERRFCDY----------RY--C---LWLRWAVVLGVSLVALLVPNFADFLSLVG--SSVCCILGFVLP 298 (345)
Q Consensus 236 ~pl~~~p~~~~l~~~~~~~----------~~--~---~~~r~~~v~~~~~vA~~vp~~~~i~~l~G--a~~~~~l~filP 298 (345)
.---++...+++..+-++. |. + .....+...++.++....| ++++.++- +.......+.+=
T Consensus 302 ~NSglystsRmL~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I 379 (462)
T COG1113 302 LNSGLYSTSRMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILP--EKVFELVTSSSGLGLLFVWLMI 379 (462)
T ss_pred ccccccccchHHHHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666654321 11 1 1244455566677778888 44444432 344455566677
Q ss_pred HHHHHHHhc
Q 019141 299 ALFHLIVFK 307 (345)
Q Consensus 299 ~l~~~~~~~ 307 (345)
.+.|+|.||
T Consensus 380 ~~s~l~~rk 388 (462)
T COG1113 380 LLSQLKLRK 388 (462)
T ss_pred HHHHHHHHh
Confidence 778888887
No 43
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=98.42 E-value=2.7e-05 Score=75.30 Aligned_cols=293 Identities=15% Similarity=0.095 Sum_probs=162.6
Q ss_pred chhhhhhhcCCCCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHH
Q 019141 7 TRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYI 86 (345)
Q Consensus 7 c~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (345)
|+.++..+ .++...+-+..++.+|++..+++.....+.......+.....+..+....+....... .. . .....
T Consensus 64 ~~~el~~~--~p~~GG~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~-~~~~~ 137 (466)
T COG0531 64 SYAELSSA--IPSAGGAYAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSI-GP--L-LIILI 137 (466)
T ss_pred HHHHHHhc--CCCCCCeeeehhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcC-Cc--h-HHHHH
Confidence 34444442 3455566677999999988899999999999988888888888877777664221100 00 0 01111
Q ss_pred HHHHHHHHhhcccCCCCchhhHHHHHHHHHHHHhhheeeeecccc----cccCCccc-cccCcchhhHHHhhhhhhhcce
Q 019141 87 WGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMIS----MKQRPALK-AFGDFSVFSYGIGVAVYAFEGV 161 (345)
Q Consensus 87 ~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~ 161 (345)
.+.....+-+.-.+..+....+.....+..+...+...+...... .....+.. ......++..+++...++|.|-
T Consensus 138 ~~~~~~~~~~ln~~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~ 217 (466)
T COG0531 138 ALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGF 217 (466)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcH
Confidence 111112222333445555555555444443333322221111110 10011110 1123446788899999999999
Q ss_pred eeeccchhhcccc-hhhhhhHHHHHHHHHHHHHHHhhhhhheecCc-cccceecccC---------CchHHHHHHHHHHH
Q 019141 162 GMILPLESETRNK-QRFGRILGWCMAFISLLYGSFGALGYFAFGEE-TKDIITTNFG---------AGLVSTLVNVGLCV 230 (345)
Q Consensus 162 ~~~~~i~~~m~~p-~~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~-~~~~i~~n~~---------~~~~~~~~~~~~~i 230 (345)
....+..+|+||| |+.+|++..+...+.++|.+....-....+++ .... ..+.| ..+...+..+...+
T Consensus 218 e~~~~~a~E~knp~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~g~~~~~~i~~~~~~ 296 (466)
T COG0531 218 EAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAAS-APSAPLALAALFGGGNWGAIIIAILALL 296 (466)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhcc-CCCccHHHHHHHcCccHHHHHHHHHHHH
Confidence 9999999999998 55899999999999999999888776666652 2211 11111 12344455555555
Q ss_pred HHHhhcccchhhHHHHHHhhhccc-----------cc--chHHHHHHHHHHHHHHhhcC----CccchhhhcchhhHHHH
Q 019141 231 NLFLTFPLMMNPVYEVVERRFCDY-----------RY--CLWLRWAVVLGVSLVALLVP----NFADFLSLVGSSVCCIL 293 (345)
Q Consensus 231 ~~~~s~pl~~~p~~~~l~~~~~~~-----------~~--~~~~r~~~v~~~~~vA~~vp----~~~~i~~l~Ga~~~~~l 293 (345)
+.+.+.........+.+...-+++ +. +...-....+.+..+....+ .++.+.++ +..+..+
T Consensus 297 ~~~~~~~~~~~~~sR~~~~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~--~~~~~~~ 374 (466)
T COG0531 297 SLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSL--ASVAFLI 374 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHH--HHHHHHH
Confidence 555554444333333333322221 11 11111111111111222222 24555555 5667778
Q ss_pred HHHHHHHHHHHHhcc
Q 019141 294 GFVLPALFHLIVFKQ 308 (345)
Q Consensus 294 ~filP~l~~~~~~~~ 308 (345)
.|.++.+..++.+++
T Consensus 375 ~y~~~~~~~~~~~~~ 389 (466)
T COG0531 375 AYLLVALALLVLRRK 389 (466)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999888765
No 44
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.40 E-value=8.7e-05 Score=72.31 Aligned_cols=50 Identities=16% Similarity=0.087 Sum_probs=39.2
Q ss_pred hhHHHhhhhhhhcceeeeccchhhcccch-hhhhhHHHHHHHHHHHHHHHh
Q 019141 147 FSYGIGVAVYAFEGVGMILPLESETRNKQ-RFGRILGWCMAFISLLYGSFG 196 (345)
Q Consensus 147 ~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~~a~~i~~~~Y~~~g 196 (345)
+..++....|+|.|-......-+|+|||| +.+|++..+..+..++|.+..
T Consensus 219 ~~~~~~~~~fsf~G~e~~~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~ 269 (482)
T TIGR00907 219 FLLGLLNPAWSMTGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFN 269 (482)
T ss_pred hhhhhhhhHHHhcCcchhhHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHH
Confidence 44555667799999999999999999985 589999998887766544333
No 45
>PRK10836 lysine transporter; Provisional
Probab=98.34 E-value=0.00012 Score=71.48 Aligned_cols=60 Identities=15% Similarity=0.111 Sum_probs=47.8
Q ss_pred cchhhHHHhhhhhhhcceeeeccchhhcccch-hhhhhHHHHHHHHHHHHHHHhhhhhhee
Q 019141 144 FSVFSYGIGVAVYAFEGVGMILPLESETRNKQ-RFGRILGWCMAFISLLYGSFGALGYFAF 203 (345)
Q Consensus 144 ~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~~a~~i~~~~Y~~~g~~gy~~f 203 (345)
+..+..+.....|+|.|-..+...-+|+|||+ +.+|++..+.....++|......-....
T Consensus 204 ~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~v 264 (489)
T PRK10836 204 FAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLII 264 (489)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 33445555667799999999999999999985 5899999999999999998865544443
No 46
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.28 E-value=0.00028 Score=68.67 Aligned_cols=196 Identities=13% Similarity=0.052 Sum_probs=96.8
Q ss_pred chhhhhhhcCCCCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccC---Cccccc-ccccch
Q 019141 7 TRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNST---TSQTIL-GFLSPK 82 (345)
Q Consensus 7 c~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~---~~~~~~-~~~~~~ 82 (345)
|+.++..+ +|+....-...++.+|+...+++.....+.......+........+..+.+... .+++.. +....+
T Consensus 66 s~aEL~s~--~P~aGG~Y~~~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (475)
T TIGR03428 66 NFAELAAR--YPISGAIYQWSRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAAN 143 (475)
T ss_pred HHHHHHhh--CCCCCCHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHH
Confidence 44555554 334444555678889999989888888776655444444444444443322110 000000 000001
Q ss_pred hHHHHHHHHHHHhhcccCCCCchhhHHHHHHHHHHHHhhheee---eecccccc--cCCcc-ccccC-cchhhHHHhhhh
Q 019141 83 ALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMV---EDVMISMK--QRPAL-KAFGD-FSVFSYGIGVAV 155 (345)
Q Consensus 83 ~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~---~~~~~~~~--~~~~~-~~~~~-~~~~~~~~~~~~ 155 (345)
...+.+..+...-+.-.+..|..+.+..+.....+..++++++ ...++... .+... .+.++ ...+..+.....
T Consensus 144 ~~~~~~~~~~~~~~in~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 223 (475)
T TIGR03428 144 AVLLGSVLLVLTTVINCIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAA 223 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHH
Confidence 1111111111122223334455555554443322222211111 11111000 00000 00111 123445666678
Q ss_pred hhhcceeeeccchhhcccchh-hhhhHHHHHHHHHHHHHHHhhhhhheec
Q 019141 156 YAFEGVGMILPLESETRNKQR-FGRILGWCMAFISLLYGSFGALGYFAFG 204 (345)
Q Consensus 156 faf~~~~~~~~i~~~m~~p~~-~~~~~~~a~~i~~~~Y~~~g~~gy~~fG 204 (345)
|+|.|-.....+-+|+|||+| .||++..+..+..++|.+.-+......+
T Consensus 224 ~~f~G~e~~~~~aeE~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 224 YVMVGFGSAGELSEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred HHhcCcchHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999854 8999999999887766655544443333
No 47
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.28 E-value=9.6e-05 Score=72.37 Aligned_cols=50 Identities=16% Similarity=-0.043 Sum_probs=41.7
Q ss_pred hHHHhhhhhhhcceeeeccchhhcccch-hhhhhHHHHHHHHHHHHHHHhh
Q 019141 148 SYGIGVAVYAFEGVGMILPLESETRNKQ-RFGRILGWCMAFISLLYGSFGA 197 (345)
Q Consensus 148 ~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~~a~~i~~~~Y~~~g~ 197 (345)
...+....|+|.|-.......+|+|||+ +++|++..+..+..++|.+..+
T Consensus 197 ~~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 197 LVVFVAFIGAYMGVEASASHINELENPGRDYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 3455557899999999999999999985 5999999999988888876443
No 48
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=98.14 E-value=6.8e-05 Score=68.99 Aligned_cols=226 Identities=12% Similarity=0.088 Sum_probs=144.0
Q ss_pred CcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHHhhcc
Q 019141 19 KINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNS 98 (345)
Q Consensus 19 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~ 98 (345)
+.+|..|..++.+||+...+.........+......+...+|.+....-.. .+.........+ ..-...
T Consensus 60 p~~~l~~~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~----------TP~~~i~~~~ll-~~~y~a 128 (320)
T PF03845_consen 60 PGKTLVEISEKLFGKWLGKIINLLYILYFLLISALVLREFSEFIKTYLLPE----------TPIWVIILLFLL-VAAYAA 128 (320)
T ss_pred CCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----------CCHHHHHHHHHH-HHHHHH
Confidence 567999999999999999999999999888888888888888877654321 122232222222 222334
Q ss_pred cCCCCchhhHHHHHHHHHHHHhhheeeeecccccccC-CccccccCcchhhHHHhhhhhhhcceeeeccchhhcccchhh
Q 019141 99 IPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQR-PALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRF 177 (345)
Q Consensus 99 ~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~ 177 (345)
.+.++.+.-.+.+-....+.....+.....++.+.++ .+.. ..++.+...+.....+.|.+-....-+...+++|||.
T Consensus 129 ~~G~e~i~R~~~~~~~~~~i~~~~i~~~~~~~~~~~~l~P~~-~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~ 207 (320)
T PF03845_consen 129 RKGIEVIARVAEILFPIFLILLLLILLLSIPNIDWDNLLPVL-ESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKL 207 (320)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHeeCcc-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 4555555554443333333333333333333222111 1111 2366678888888888888877777788899999999
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhheecCccccceec---------ccCCchH---HHHHHHHHHHHHHhhcccchhhHHH
Q 019141 178 GRILGWCMAFISLLYGSFGALGYFAFGEETKDIITT---------NFGAGLV---STLVNVGLCVNLFLTFPLMMNPVYE 245 (345)
Q Consensus 178 ~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~~~i~~---------n~~~~~~---~~~~~~~~~i~~~~s~pl~~~p~~~ 245 (345)
+|....+..++.+.|...-+.....||.+..++... +.+ +.. -...-.......+.+.-+..+...+
T Consensus 208 ~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~-~fieRld~~~i~~w~~~~~~~~~~~~~~~~~ 286 (320)
T PF03845_consen 208 KKSLLIAILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIG-DFIERLDSIFILIWIIGIFIKISLYLYAASE 286 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888888888653332210 111 111 1122223344556667778888889
Q ss_pred HHHhhhcccccc
Q 019141 246 VVERRFCDYRYC 257 (345)
Q Consensus 246 ~l~~~~~~~~~~ 257 (345)
.+.+.++.++++
T Consensus 287 ~~~~~f~~~~~~ 298 (320)
T PF03845_consen 287 GLSQLFKLKDYK 298 (320)
T ss_pred HHHHHhCCCCcc
Confidence 999998877766
No 49
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.03 E-value=0.00031 Score=66.39 Aligned_cols=264 Identities=13% Similarity=-0.051 Sum_probs=148.8
Q ss_pred hhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHHhhcccCCCCc
Q 019141 25 DLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTH 104 (345)
Q Consensus 25 ~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 104 (345)
.++|..||.+|.++...++.+++.|-.....+..++-.... .. .+...++++..+++...... ..+.
T Consensus 85 i~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~----~~--------~~~~~~ili~g~l~~l~~if-G~r~ 151 (442)
T COG1457 85 ILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG----TG--------LPVWAGILIIGVLMTLVTIF-GYRA 151 (442)
T ss_pred eeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC----CC--------CcHHHHHHHHHHHHHHHHHH-hHHH
Confidence 46788999999999999999999999999999988861111 11 23344444444333333332 2233
Q ss_pred hhhHHHHHHHHHHHHhhheeeeecc-cccccCCccccccCcchhhHHHhhhhhhh-cceeeeccchhhcccch--hhhhh
Q 019141 105 LAPLSIFADIVDLGAMGLVMVEDVM-ISMKQRPALKAFGDFSVFSYGIGVAVYAF-EGVGMILPLESETRNKQ--RFGRI 180 (345)
Q Consensus 105 l~~~s~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~~i~~~m~~p~--~~~~~ 180 (345)
++..+..+...........++.... ....+....+...++.++..+++...=.+ ..-+-..+..+-+|+|| |.-..
T Consensus 152 l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~ 231 (442)
T COG1457 152 LHKLERIAVPLLLLLFLYLLALLFRSKGGLDALWVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLA 231 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccceeeccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHH
Confidence 3334433333333333322222111 00011111111224445555555433333 33455678888898887 55556
Q ss_pred HHHHHHHHHHHHHHHhhhhhheecCcc-ccceecccCCchHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhcc-cccch
Q 019141 181 LGWCMAFISLLYGSFGALGYFAFGEET-KDIITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCD-YRYCL 258 (345)
Q Consensus 181 ~~~a~~i~~~~Y~~~g~~gy~~fG~~~-~~~i~~n~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~-~~~~~ 258 (345)
...+.......-+++|...-.+-|+.. ..+....+++ +...+.+...++...+--..+++..-.+.+...+ +|.+.
T Consensus 232 ~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~--~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~~l~k~~~ 309 (442)
T COG1457 232 AVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG--FGLPAILILVLGTVTTNANNLYSAGLSFANIIPKLSKVTR 309 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc--HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhhhhhhHHH
Confidence 667777777778888888888877766 3334444443 5566667777777888888888887777777654 23222
Q ss_pred HHHHHHHHHHHHHHhh----cCCccchhhhcchhhHHHHHHHHHHHHHHH
Q 019141 259 WLRWAVVLGVSLVALL----VPNFADFLSLVGSSVCCILGFVLPALFHLI 304 (345)
Q Consensus 259 ~~r~~~v~~~~~vA~~----vp~~~~i~~l~Ga~~~~~l~filP~l~~~~ 304 (345)
+.-...- ...++|+. ..+++..+.++|+.........+-=.+..|
T Consensus 310 ~v~~~v~-igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~I~iad~~~~r 358 (442)
T COG1457 310 VVIAGVG-IGTLLALAGPFFYNFFENFLLLLGYFIPPWGGVMIADYFIVR 358 (442)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2111111 33333333 456777777776666555544444333333
No 50
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.00 E-value=0.00045 Score=65.23 Aligned_cols=260 Identities=15% Similarity=0.007 Sum_probs=142.1
Q ss_pred CcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHHhhcc
Q 019141 19 KINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNS 98 (345)
Q Consensus 19 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~ 98 (345)
...++.-+.|..||++|..+..+...+...|--.......++.+..+.++..+.. +......+...+..+.+.
T Consensus 56 ~Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~~-------~~~~~~~i~~~l~~~~~~ 128 (386)
T TIGR02358 56 TGLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGEE-------SPMLWILIVGILVTLWLL 128 (386)
T ss_pred cCcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------chHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999999999988887532221 112222233333333333
Q ss_pred cCCCCchhhHHHHHHHHHHHHhhheeeeecccc-cccCCccccccCcchhhHHHhhhhhh-hcceeeeccchhhcccchh
Q 019141 99 IPTLTHLAPLSIFADIVDLGAMGLVMVEDVMIS-MKQRPALKAFGDFSVFSYGIGVAVYA-FEGVGMILPLESETRNKQR 176 (345)
Q Consensus 99 ~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~fa-f~~~~~~~~i~~~m~~p~~ 176 (345)
...+.++++..++........+...+....+. ..+..+. .++ .++..+++...-. -..-...++..+..|+|||
T Consensus 129 -~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~-~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~ 204 (386)
T TIGR02358 129 -SGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELWNR--AGD-MSFAVAVELVIAMPLSWLPLIADYTRFARNPRH 204 (386)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcCC--CCC-ccHHHHHHHHHHHHHHHHHHccchhhhcCCCcc
Confidence 33455666666665555444433222111110 0000000 011 2233333222210 1222347899999998888
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhheecCccccceecccCCchHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhccccc
Q 019141 177 FGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRY 256 (345)
Q Consensus 177 ~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~~~i~~n~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~ 256 (345)
..+....+..+...+-..+|.....+.++....++....+ ....+-+...++...+-....++....+.+..++-++
T Consensus 205 ~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~d~~~~~~~~g---~~~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~~~~~~ 281 (386)
T TIGR02358 205 VFLGTVLGYFIGSCWMYFLGLAVTLATGQTDIISILAGAG---LGIPALLIILLSTVTTTFMDIYSAAISTGNLLPRLKV 281 (386)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcc---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 8888888888888888888887766665431111221111 1122333444555566667777777777777643222
Q ss_pred chHHHHHHHHHHHHHHhhc--CCccchhhhcchhhHHHH
Q 019141 257 CLWLRWAVVLGVSLVALLV--PNFADFLSLVGSSVCCIL 293 (345)
Q Consensus 257 ~~~~r~~~v~~~~~vA~~v--p~~~~i~~l~Ga~~~~~l 293 (345)
++. ..+..++..+++... ..+++++++.|...+...
T Consensus 282 ~~~-~~i~~ii~~~l~~~~~~~~f~~FL~~lg~~~~P~~ 319 (386)
T TIGR02358 282 KHL-AIGVGVLGTLIALLFPVDKYENFLLLIGSVFAPLY 319 (386)
T ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 112222333333332 345556665555444433
No 51
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.97 E-value=0.00048 Score=67.50 Aligned_cols=296 Identities=15% Similarity=0.089 Sum_probs=171.2
Q ss_pred cchhhhhhhcCCCC-cCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhH
Q 019141 6 HTRRKLETIHGFSK-INSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKAL 84 (345)
Q Consensus 6 ~c~~~~~~~~~~~~-~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (345)
.|+-++..+. |. ..++-..+++..|+-..+++..-..+...-.+.+-....+..++.... .+.........+...
T Consensus 82 ~~~~E~~~~~--P~~aGs~~~ya~~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~--~~~~~~~~~~~~~~~ 157 (554)
T KOG1286|consen 82 LCLGEFAVRF--PVSAGSFYTYAYRFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG--ASLIGILVDTVNPGG 157 (554)
T ss_pred HHHHHHheec--ccccccceeeeeeeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--cccccccccCCCCCc
Confidence 4555555543 33 244555578888999999999999999999999999998888887751 000000000000011
Q ss_pred HH--HHHHHHHHhhcccCC---CCchhhHHHHHHHHHHHHhhheeeeeccccc-------ccCCcc-cccc-CcchhhHH
Q 019141 85 YI--WGCFPFQLGLNSIPT---LTHLAPLSIFADIVDLGAMGLVMVEDVMISM-------KQRPAL-KAFG-DFSVFSYG 150 (345)
Q Consensus 85 ~~--~i~~~~~~pl~~~~~---l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~-------~~~~~~-~~~~-~~~~~~~~ 150 (345)
+. .+..++++.+.-++- .+....+..+-....++...+++..+....+ +.+.+- ...+ .+.++..+
T Consensus 158 ~~~~fla~~v~in~~gv~~~ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~ 237 (554)
T KOG1286|consen 158 WIPDFLAFILIINLFGVLAYGEVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSG 237 (554)
T ss_pred cHHHHHHHHHHHHHHHHhhccceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHH
Confidence 11 111112222333333 3333333222222222222233332221111 111111 1112 37789999
Q ss_pred Hhhhhhhhcceeeeccchhhcccchh-hhhhHHHHHHHHHHHHHHHhhhhhhe--ecCc-cccceec------ccCCchH
Q 019141 151 IGVAVYAFEGVGMILPLESETRNKQR-FGRILGWCMAFISLLYGSFGALGYFA--FGEE-TKDIITT------NFGAGLV 220 (345)
Q Consensus 151 ~~~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~~a~~i~~~~Y~~~g~~gy~~--fG~~-~~~~i~~------n~~~~~~ 220 (345)
+.+..|+|.|-..+-...+|-||||| .|+++..++..+.+.|....+.--+. |.|. ..++... ..++.+.
T Consensus 238 ~~~~~fsf~G~e~va~~a~E~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~ 317 (554)
T KOG1286|consen 238 AATAFFSFIGFELVATTAEEAKNPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGA 317 (554)
T ss_pred HHHHHHHHhhHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCc
Confidence 99999999999999999999999855 89999999999999999988753333 2221 2222111 1122233
Q ss_pred HH---HHHHHHHHHHHhhcccchhhHHHHHHhhhcccc----------c--chHHHHHHHHHHHHHHhhcCC-----ccc
Q 019141 221 ST---LVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYR----------Y--CLWLRWAVVLGVSLVALLVPN-----FAD 280 (345)
Q Consensus 221 ~~---~~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~----------~--~~~~r~~~v~~~~~vA~~vp~-----~~~ 280 (345)
.. ++++...+.+..+---.+++..+.+..+-++.. + +.....+..++..+.++.... ++.
T Consensus 318 k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~ 397 (554)
T KOG1286|consen 318 KYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNW 397 (554)
T ss_pred cccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHH
Confidence 33 788888888888888888888888877765422 1 111222223333444444322 577
Q ss_pred hhhhcchhhHHHHHHHHHHHHHHHHhc
Q 019141 281 FLSLVGSSVCCILGFVLPALFHLIVFK 307 (345)
Q Consensus 281 i~~l~Ga~~~~~l~filP~l~~~~~~~ 307 (345)
++++. ..++.+.+..=++.|++.|+
T Consensus 398 L~~~~--si~tl~~w~~i~~~~i~~R~ 422 (554)
T KOG1286|consen 398 LVNLS--SIGTLFAWTLVALSHLRFRY 422 (554)
T ss_pred HHHHH--hHHHHHHHHHHHHHHeeeee
Confidence 88874 45777888888888888876
No 52
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=97.96 E-value=0.0027 Score=62.11 Aligned_cols=54 Identities=20% Similarity=0.164 Sum_probs=46.3
Q ss_pred hhhHHHhhhhhhhcceeeeccchhhcccch-hhhhhHHHHHHHHHHHHHHHhhhh
Q 019141 146 VFSYGIGVAVYAFEGVGMILPLESETRNKQ-RFGRILGWCMAFISLLYGSFGALG 199 (345)
Q Consensus 146 ~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~~a~~i~~~~Y~~~g~~g 199 (345)
++..++....|+|.|........+|+|||| +.+|++..+.....++|.+..+.-
T Consensus 212 ~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 212 AVLSFVVFAIFAYGGIEAVGGLVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 466677888999999999999999999985 599999999999999999865443
No 53
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=97.85 E-value=6.4e-05 Score=73.17 Aligned_cols=195 Identities=13% Similarity=0.006 Sum_probs=107.5
Q ss_pred cchhhhhhhcCCCCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHH
Q 019141 6 HTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALY 85 (345)
Q Consensus 6 ~c~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 85 (345)
.|..++..+ .++...+-+.+++.+|+...+.+.+.................+..+... ....+.. ..+.... .+
T Consensus 47 ~~~~ems~~--~p~~Gg~y~y~~~~lg~~~Gf~~gw~y~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~-~~ 120 (478)
T PF00324_consen 47 LSLAEMSRR--FPSAGGFYAYASRGLGPALGFAAGWAYWLSYIAAIAAEATAAGSFLQFW-GYFPGLP--STWVWGI-LI 120 (478)
T ss_pred hhhhhhhhh--hccccchhhhhhhccCCcCCceeeHHHHHHHHHHHHhhhhhhhhhhccc-ccccccc--ccccccc-hh
Confidence 344455444 2355666777889999999888888877766666666666666555443 1111111 0111111 11
Q ss_pred HHHHHHH--HHhhcccCCCCchhhHHH-HHHHHHHHHhhhe-eee-eccccccc-----CC----ccc------cccCcc
Q 019141 86 IWGCFPF--QLGLNSIPTLTHLAPLSI-FADIVDLGAMGLV-MVE-DVMISMKQ-----RP----ALK------AFGDFS 145 (345)
Q Consensus 86 ~~i~~~~--~~pl~~~~~l~~l~~~s~-~~~~~~~~~~~~v-~~~-~~~~~~~~-----~~----~~~------~~~~~~ 145 (345)
..+...+ .+-+.-.|...+....-. +-....+..++.. +.. ...+..+. +. ..+ ...++.
T Consensus 121 ~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (478)
T PF00324_consen 121 AIIFILLITLLNLFGVRVSGKIEFILTIIKLIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFS 200 (478)
T ss_pred hhhhhhhhhhhhhhhhhccchHHHHHHHHhhhHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchh
Confidence 1111111 122222333333222211 1111111111111 111 11111111 00 011 011367
Q ss_pred hhhHHHhhhhhhhcceeeeccchhhcccch-hhhhhHHHHHHHHHHHHHHHhhhhhheecCc
Q 019141 146 VFSYGIGVAVYAFEGVGMILPLESETRNKQ-RFGRILGWCMAFISLLYGSFGALGYFAFGEE 206 (345)
Q Consensus 146 ~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~ 206 (345)
++..++....++|.|-......-+|.|||| +.||+...+.....++|.......-...|.+
T Consensus 201 ~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~ 262 (478)
T PF00324_consen 201 GFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATLLSVLRIGVFYVLTSYALTLAVPYD 262 (478)
T ss_pred HHHHhhhhhhcccccccccccccccCCCchhhhhhHhhhhhhhhhhhhhhhhhhcccccCcc
Confidence 899999999999999999999999999986 4899999999999999998887665565543
No 54
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=97.38 E-value=0.012 Score=53.17 Aligned_cols=49 Identities=18% Similarity=0.172 Sum_probs=44.9
Q ss_pred CcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhh
Q 019141 19 KINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMIN 67 (345)
Q Consensus 19 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~ 67 (345)
+..+|+|.-+..+||+...+.|+.+.++.+++++.-+-..|..+.+.++
T Consensus 64 ~a~~y~~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~ 112 (349)
T COG3949 64 NATSYREILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFG 112 (349)
T ss_pred cccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhC
Confidence 6789999999999999999999999999999999998888888777765
No 55
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=97.31 E-value=0.0099 Score=57.28 Aligned_cols=235 Identities=11% Similarity=-0.028 Sum_probs=127.4
Q ss_pred CcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCccc-cccccc-chhHHHHHHHHHHHhh
Q 019141 19 KINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQT-ILGFLS-PKALYIWGCFPFQLGL 96 (345)
Q Consensus 19 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~-~~~~~~-~~~~~~~i~~~~~~pl 96 (345)
...++.-+.|..||.+|..+..++..+...|-........++.+..+++...+... ..+... ......++...+.+++
T Consensus 74 ~Gl~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~ 153 (442)
T TIGR00800 74 YGLPFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVF 153 (442)
T ss_pred hCCCcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHH
Confidence 34577788999999999999999999999999999999999888777766433200 000000 1112223333444454
Q ss_pred cccCCCCchhhHHHHHHHHHHHHhhhee---eeec--ccccccCCccccccCcchhhHHHhhhh-hhhcceeeeccchhh
Q 019141 97 NSIPTLTHLAPLSIFADIVDLGAMGLVM---VEDV--MISMKQRPALKAFGDFSVFSYGIGVAV-YAFEGVGMILPLESE 170 (345)
Q Consensus 97 ~~~~~l~~l~~~s~~~~~~~~~~~~~v~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-faf~~~~~~~~i~~~ 170 (345)
......+........+.......+...+ .... .+.....++.+......++..+++..+ +.-..-.+.++..+.
T Consensus 154 ~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy 233 (442)
T TIGR00800 154 LFFFGYKIRHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRF 233 (442)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhh
Confidence 4444444444444444433322222221 1111 100101111111112334555555422 222445678999999
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHhhhhhhe----ecCccccc--eecccCCchHHHH------HHHHHHHHHH-hhcc
Q 019141 171 TRNKQRFGRILGWCMAFISLLYGSFGALGYFA----FGEETKDI--ITTNFGAGLVSTL------VNVGLCVNLF-LTFP 237 (345)
Q Consensus 171 m~~p~~~~~~~~~a~~i~~~~Y~~~g~~gy~~----fG~~~~~~--i~~n~~~~~~~~~------~~~~~~i~~~-~s~p 237 (345)
+|++++-.+....++.........+|..+-.. +|+...++ ....++....... .++...+..+ +..-
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~~~vl~~~~t~~~ 313 (442)
T TIGR00800 234 GKSKKTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLGLTYAVGARAVFGFGFCFVVAQLSTNIS 313 (442)
T ss_pred cCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99988877778888888888888877776655 77654332 2233333221111 1122222222 3555
Q ss_pred cchhhHHHHHHhhhcc
Q 019141 238 LMMNPVYEVVERRFCD 253 (345)
Q Consensus 238 l~~~p~~~~l~~~~~~ 253 (345)
...++....+.+..++
T Consensus 314 ~N~ys~~l~l~~l~~~ 329 (442)
T TIGR00800 314 ANSYSAGLDIAALLPK 329 (442)
T ss_pred hhccchHHHHHHhCcC
Confidence 5677777777777654
No 56
>PRK11375 allantoin permease; Provisional
Probab=97.25 E-value=0.014 Score=56.76 Aligned_cols=278 Identities=11% Similarity=0.002 Sum_probs=138.0
Q ss_pred CcCChhhhhHHhhccchhhHHHHHHH-HHhhhhhhhhHHhHHhhHHHhhhccC----Ccc-ccc--ccccchhHHHHHHH
Q 019141 19 KINSFGDLGYTVCGSVGRVAVDAMIV-LAQAGFCVSYLIFIANTLTHMINNST----TSQ-TIL--GFLSPKALYIWGCF 90 (345)
Q Consensus 19 ~~~~y~~l~~~~~G~~~~~~~~~~~~-~~~~g~~v~y~i~~~~~l~~~~~~~~----~~~-~~~--~~~~~~~~~~~i~~ 90 (345)
...++.-+.|..||.+|..+..+... +..+|-........++.+..+++... +.+ +.. ...........++.
T Consensus 87 ~Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~ 166 (484)
T PRK11375 87 YGVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFW 166 (484)
T ss_pred cCCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHH
Confidence 45678889999999999888888874 56677777777777777776654422 110 000 00011112222333
Q ss_pred HHHHhhcccCCCCchhhHHHHHHHHHHHHhhheee----e-ecccccccCC--ccccccCcchhhHHHhhhhhhhc-cee
Q 019141 91 PFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMV----E-DVMISMKQRP--ALKAFGDFSVFSYGIGVAVYAFE-GVG 162 (345)
Q Consensus 91 ~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~----~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~faf~-~~~ 162 (345)
++..+... ...+.++++..++........+...+ . +........+ +.........+..++...+=++. .-.
T Consensus 167 ~l~~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~ 245 (484)
T PRK11375 167 LVNVGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAV 245 (484)
T ss_pred HHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHc
Confidence 44455543 34455555555444333222221111 1 1110110111 11111112233344433222333 344
Q ss_pred eeccchhhcccchhhhhhHHHHHHHHHHHHHHHhhhh----hheecCcccc--ceecccCCchHHHHHHHHHHHHHHhh-
Q 019141 163 MILPLESETRNKQRFGRILGWCMAFISLLYGSFGALG----YFAFGEETKD--IITTNFGAGLVSTLVNVGLCVNLFLT- 235 (345)
Q Consensus 163 ~~~~i~~~m~~p~~~~~~~~~a~~i~~~~Y~~~g~~g----y~~fG~~~~~--~i~~n~~~~~~~~~~~~~~~i~~~~s- 235 (345)
+.|+..+..|++|+-.+....++.+...+...+|... ...+|+...| +++.++++......+-+...++...+
T Consensus 246 ~~~D~tRy~k~~~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~~~~~~~~a~l~~v~a~~~tN 325 (484)
T PRK11375 246 SASDFTQNAHSFRAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWDSLFASFFAVLVILMTTISTN 325 (484)
T ss_pred cccchhcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 7889999999988777776767766666654444432 3456654433 22333333333333444555555555
Q ss_pred cccchhhHHHHHHhhhcccccchHHHHHHHHHHHHHHhh--cCC---ccchhhhcchhhHHHHHHHH
Q 019141 236 FPLMMNPVYEVVERRFCDYRYCLWLRWAVVLGVSLVALL--VPN---FADFLSLVGSSVCCILGFVL 297 (345)
Q Consensus 236 ~pl~~~p~~~~l~~~~~~~~~~~~~r~~~v~~~~~vA~~--vp~---~~~i~~l~Ga~~~~~l~fil 297 (345)
.....+|....+.+.+.++-.++....+.-++..+++.. +.+ +.+++++.|++.+.....++
T Consensus 326 ~~~N~ys~~~~l~~l~pk~i~~~~~~~i~~iig~~~~pw~~~~~~~~f~~FL~~lg~~l~Pi~gImi 392 (484)
T PRK11375 326 ATGNIIPAGYQIAALAPTKLTYKNGVLIASIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVMM 392 (484)
T ss_pred HHhhcccHHHHHHHhCcCccchhhHHHHHHHHHHHhccHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777888888888765321111111111222222211 223 66777777777666554443
No 57
>PRK11017 codB cytosine permease; Provisional
Probab=97.18 E-value=0.013 Score=55.78 Aligned_cols=257 Identities=19% Similarity=0.050 Sum_probs=122.9
Q ss_pred CcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHHhhcc
Q 019141 19 KINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNS 98 (345)
Q Consensus 19 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~ 98 (345)
...++.-+.|..||.+|..+..+...+...|-........++.+++..+. + ......+..++..+...
T Consensus 69 ~G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~~---~---------~~~~~~i~~~l~~~~~~ 136 (404)
T PRK11017 69 TGLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATGL---D---------INLLIVLSGLLMTVTAY 136 (404)
T ss_pred cCcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC---C---------HHHHHHHHHHHHHHHHH
Confidence 45688899999999999999999988888887777777777666554321 1 01122222233333333
Q ss_pred --cCCCCchhhHHHHHHHHHHHHhhheeeeecccccccCCccccccCcchhhHHHhhhhhhh-cceeeeccchhhcccch
Q 019141 99 --IPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAF-EGVGMILPLESETRNKQ 175 (345)
Q Consensus 99 --~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~~i~~~m~~p~ 175 (345)
.|.++++..++.................... ...+..+.+.. +..++..+++..+=.+ ..-.+.++..+..|++|
T Consensus 137 ~G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~-~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~ 214 (404)
T PRK11017 137 FGISALTILSRIAVPAIALLGGYSVWLAVNDVG-GLDGLKAIVPA-EPLDFSAALTLVVGSFISGGTLTADFVRFGRSAK 214 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-chhhhhcCCCC-CcccHHHHHHHHHHHHHHhHhcCCChHhhccCcc
Confidence 3444444444333222222111111111110 00000000111 1223444444432222 33567888889988877
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhheecCccccceecccCCchHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhcccc
Q 019141 176 RFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYR 255 (345)
Q Consensus 176 ~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~~~i~~n~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~ 255 (345)
+-......++.+....-.++|...-...|+. |+......+......-+...++..++--..++...-.+.+..+.++
T Consensus 215 ~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~~---d~~~~~~~~~~~~~~l~~~~l~~~t~n~~~~ys~~l~~~~l~~~~~ 291 (404)
T PRK11017 215 IAVLATMVAFFLGNSLMFIFGAAGAAVYGQA---DISDVMIAQGLLIPAIVMLGLNIWTTNDNALYASGLGFCNITRLSS 291 (404)
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHcCCc---cHHHHHHHhchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 6555666666666666666776555555542 2222221111112222333344444334444444444455443333
Q ss_pred cchHHHHHHHHHHHHHHh-hcCCccchhhhcchhhHHHHH
Q 019141 256 YCLWLRWAVVLGVSLVAL-LVPNFADFLSLVGSSVCCILG 294 (345)
Q Consensus 256 ~~~~~r~~~v~~~~~vA~-~vp~~~~i~~l~Ga~~~~~l~ 294 (345)
++. ..+..+++..++. ...++++++++.|...+....
T Consensus 292 ~~~--~ii~~vi~~~i~~~~~~~~~~FL~~lg~~l~P~~g 329 (404)
T PRK11017 292 RTL--TVVNGIIGTVLALWLYNNFVGWLTLLGSAIPPVGG 329 (404)
T ss_pred hHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Confidence 321 1222222223322 234566667766655444433
No 58
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=96.88 E-value=0.43 Score=46.28 Aligned_cols=289 Identities=11% Similarity=0.071 Sum_probs=161.9
Q ss_pred eecchhhhhhhcCCCCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchh
Q 019141 4 LVHTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKA 83 (345)
Q Consensus 4 L~~c~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~ 83 (345)
++.|.-++... .|...++...+.+.-++-..+.+...-..+..-++..-++..+..++...++. .+..
T Consensus 94 vm~sLGEma~~--~P~sGsF~~ya~rfvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~----------v~~~ 161 (541)
T COG0833 94 VMQSLGELAVF--YPVSGSFSTYATRFVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDT----------VPPW 161 (541)
T ss_pred HHHHHHHHHhh--cCCCCchhhhhhhhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCC----------CChH
Confidence 34455555544 33555688889999888888888887777777777777777766554443221 1234
Q ss_pred HHHHHHHHHH--HhhcccCCCCchhhHHHH-HHHHHHHHhh--heee-eeccc-c---cccCCc-cccccCcchhhHHHh
Q 019141 84 LYIWGCFPFQ--LGLNSIPTLTHLAPLSIF-ADIVDLGAMG--LVMV-EDVMI-S---MKQRPA-LKAFGDFSVFSYGIG 152 (345)
Q Consensus 84 ~~~~i~~~~~--~pl~~~~~l~~l~~~s~~-~~~~~~~~~~--~v~~-~~~~~-~---~~~~~~-~~~~~~~~~~~~~~~ 152 (345)
.|+.++.+++ +=+.-.|...+..++-.. =++.++..++ +++. ...++ . .+...+ -...+.+.++...+-
T Consensus 162 ~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v 241 (541)
T COG0833 162 IWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFV 241 (541)
T ss_pred HHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHh
Confidence 5555443333 334456777766655332 2222222222 1111 11221 0 011111 112245678888899
Q ss_pred hhhhhhcceeeeccchhhcccchh-hhhhHHHHHHHHHHHHHHHhh-hhhh-eecCc----------cccceecccCC--
Q 019141 153 VAVYAFEGVGMILPLESETRNKQR-FGRILGWCMAFISLLYGSFGA-LGYF-AFGEE----------TKDIITTNFGA-- 217 (345)
Q Consensus 153 ~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~~a~~i~~~~Y~~~g~-~gy~-~fG~~----------~~~~i~~n~~~-- 217 (345)
...|||.|...+--...|-+||+| .||++.-.+-=..+.|...-+ .|-. .|.|. .+++....+.+
T Consensus 242 ~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~G 321 (541)
T COG0833 242 IAAFSFSGTELVGLAAGESENPRKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAG 321 (541)
T ss_pred hheeeeeceeeeeeeecccCCchhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcC
Confidence 999999999999888899999855 788777766666666654332 2222 23331 12222222222
Q ss_pred -chHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhcccccchH---------------HHHHHHHHHHHHHhhcCC---c
Q 019141 218 -GLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYCLW---------------LRWAVVLGVSLVALLVPN---F 278 (345)
Q Consensus 218 -~~~~~~~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~---------------~r~~~v~~~~~vA~~vp~---~ 278 (345)
.....+.|....++++.+---.++...+.+..+-+++.-+++ .+...-+++.+-+.. ++ +
T Consensus 322 i~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~-~~~~vf 400 (541)
T COG0833 322 IPVAASIMNAVILTSVLSAANSGLYASSRMLYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSF-KETTVF 400 (541)
T ss_pred CccchHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhcc-CcchHH
Confidence 134467777777777777777778888888777755331111 111111222222222 22 4
Q ss_pred cchhhhcchhhHHHHHHHHHHHHHHHHhc
Q 019141 279 ADFLSLVGSSVCCILGFVLPALFHLIVFK 307 (345)
Q Consensus 279 ~~i~~l~Ga~~~~~l~filP~l~~~~~~~ 307 (345)
+-++++.| .+..++++-=++.|+|.||
T Consensus 401 ~wL~~isg--~s~~i~W~~I~~shirFR~ 427 (541)
T COG0833 401 NWLLNISG--LSGFIAWGSICLSHIRFRR 427 (541)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 45666643 3455777888888999876
No 59
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=96.85 E-value=0.033 Score=52.99 Aligned_cols=91 Identities=12% Similarity=0.020 Sum_probs=54.5
Q ss_pred CCCcCChhhhhHHhhccch--hhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHH
Q 019141 17 FSKINSFGDLGYTVCGSVG--RVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQL 94 (345)
Q Consensus 17 ~~~~~~y~~l~~~~~G~~~--~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 94 (345)
+.+..|..|.-|+-||++. +.+..+...+.......+.+...+..++.+++- +....+++...+.+
T Consensus 65 ~~~~~T~~e~~~~Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi------------~~~~~~~i~~~i~~ 132 (406)
T PF00474_consen 65 RSGAVTIPEYLEKRYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGI------------PYNTAILIVGVIVI 132 (406)
T ss_dssp HTT--SHHHHHHHHT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--------------HHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhhcCCchhhhhhcccccchhhhhhhhccccccccchhhccch------------hhhHHHHHHHHHHH
Confidence 3478899999999999998 777666677777777778888888877776541 11233333444445
Q ss_pred hhcccCCCCchhhHHHHHHHHHHHH
Q 019141 95 GLNSIPTLTHLAPLSIFADIVDLGA 119 (345)
Q Consensus 95 pl~~~~~l~~l~~~s~~~~~~~~~~ 119 (345)
-......++...+...+=.+.++..
T Consensus 133 iYt~~GGl~av~~td~iQ~~i~~~~ 157 (406)
T PF00474_consen 133 IYTFFGGLRAVAWTDFIQGVIMIIG 157 (406)
T ss_dssp HTTCTT------SHHHHHHHHHHHH
T ss_pred HhhhhhhHhhhhHHHHHHHHHHHHH
Confidence 5677778888777776655544333
No 60
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=96.80 E-value=0.18 Score=48.97 Aligned_cols=174 Identities=9% Similarity=-0.021 Sum_probs=92.2
Q ss_pred CCCcCChhhhhHHhhccc-hhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHHh
Q 019141 17 FSKINSFGDLGYTVCGSV-GRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLG 95 (345)
Q Consensus 17 ~~~~~~y~~l~~~~~G~~-~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p 95 (345)
+.+..|..|.-++-||++ .+.+..+...+..++...+.+...+..++.+++- +...-+++..++..-
T Consensus 103 ~~~~~T~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi------------~~~~~iii~~~iv~i 170 (471)
T TIGR02119 103 KYNAITINDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGL------------SYLTALFIFSSSVLI 170 (471)
T ss_pred HcCCccHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHH
Confidence 447889999999999965 4778888888888888888788888777766541 112223333333445
Q ss_pred hcccCCCCchhhHHHHHHHHHHHHhhhee----ee--ecccc----cccCCcc-ccc--cCcc--hhhHHHh-hhhhhhc
Q 019141 96 LNSIPTLTHLAPLSIFADIVDLGAMGLVM----VE--DVMIS----MKQRPAL-KAF--GDFS--VFSYGIG-VAVYAFE 159 (345)
Q Consensus 96 l~~~~~l~~l~~~s~~~~~~~~~~~~~v~----~~--~~~~~----~~~~~~~-~~~--~~~~--~~~~~~~-~~~faf~ 159 (345)
......++...+...+=...++....++. .. +..+. .+.+++. .++ .++. .+...+. ...++..
T Consensus 171 Yt~~GG~~av~~td~iQ~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 250 (471)
T TIGR02119 171 YTTFGGFRAVALTDAIQGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVI 250 (471)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHh
Confidence 56677777777766554443333222211 11 11110 0111111 111 0110 1111111 1223333
Q ss_pred ceeeeccchhhcccchhhhhhHHHHHHHHHHHHHHHhhhhhhe
Q 019141 160 GVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFA 202 (345)
Q Consensus 160 ~~~~~~~i~~~m~~p~~~~~~~~~a~~i~~~~Y~~~g~~gy~~ 202 (345)
+++....-.-..|++|+.+|....+..+...++....+.|..+
T Consensus 251 ~~p~~~~R~~aak~~~~a~~~~~~~~~~~~~~~~~~~~~G~~a 293 (471)
T TIGR02119 251 GLPQTAVRCMSYKDSKAMHRAMIIGTIVVGIIMLGMHLAGVLG 293 (471)
T ss_pred CchHHHHHHHhcCCHHHHhhhHhHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333566778888888777766666655555555333
No 61
>PRK12488 acetate permease; Provisional
Probab=96.75 E-value=0.5 Score=46.94 Aligned_cols=88 Identities=6% Similarity=-0.079 Sum_probs=59.6
Q ss_pred CCCcCChhhhhHHhhc-cchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHHh
Q 019141 17 FSKINSFGDLGYTVCG-SVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLG 95 (345)
Q Consensus 17 ~~~~~~y~~l~~~~~G-~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p 95 (345)
+.+..|..|.-+.=|| ++.|.+..+...+....-..+.+...+..++.+++- +...-+++..++..-
T Consensus 126 ~~g~~T~~d~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi------------~~~~~iii~~~i~~~ 193 (549)
T PRK12488 126 NLGKYTFADVVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGI------------SYLYAVVIVGALMVL 193 (549)
T ss_pred HCCCcchHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------------CHHHHHHHHHHHHHH
Confidence 4467899999888887 568998888888888777788888888777776531 112223333344445
Q ss_pred hcccCCCCchhhHHHHHHHHH
Q 019141 96 LNSIPTLTHLAPLSIFADIVD 116 (345)
Q Consensus 96 l~~~~~l~~l~~~s~~~~~~~ 116 (345)
......++...|...+=.+.+
T Consensus 194 Yt~~GGm~av~~td~iQ~~im 214 (549)
T PRK12488 194 YVTFGGMLATTWVQIIKAVLL 214 (549)
T ss_pred HHhccchhHHHHHHHHHHHHH
Confidence 567777888777776554433
No 62
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=96.58 E-value=0.2 Score=47.68 Aligned_cols=89 Identities=8% Similarity=-0.097 Sum_probs=61.8
Q ss_pred CCCcCChhhhhHHhhcc-chhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHHh
Q 019141 17 FSKINSFGDLGYTVCGS-VGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLG 95 (345)
Q Consensus 17 ~~~~~~y~~l~~~~~G~-~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p 95 (345)
+.+..|..|.-+.-||+ ..|.+..+...+..+....+.+...+..++.+++- +....+++..++..-
T Consensus 62 ~~~~~T~~e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi------------~~~~~~ii~~~i~~~ 129 (407)
T TIGR00813 62 NNGAYTMPEYLEKRFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITGL------------DLYLSLLLLGAITIL 129 (407)
T ss_pred HcCCCchhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------------hHHHHHHHHHHHHHH
Confidence 34688999999999998 57787788888888888888888888888777541 112223333344444
Q ss_pred hcccCCCCchhhHHHHHHHHHH
Q 019141 96 LNSIPTLTHLAPLSIFADIVDL 117 (345)
Q Consensus 96 l~~~~~l~~l~~~s~~~~~~~~ 117 (345)
......++...+.-.+=.+.++
T Consensus 130 Yt~~GG~~av~~Td~iQ~~i~~ 151 (407)
T TIGR00813 130 YTVFGGLKAVVWTDTIQAVIMI 151 (407)
T ss_pred HHHHcchHHHHHHHHHHHHHHH
Confidence 5667777777777665554443
No 63
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=96.47 E-value=0.63 Score=45.44 Aligned_cols=177 Identities=8% Similarity=-0.038 Sum_probs=91.4
Q ss_pred CCCcCChhhhhHHhhccc-hhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHHh
Q 019141 17 FSKINSFGDLGYTVCGSV-GRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLG 95 (345)
Q Consensus 17 ~~~~~~y~~l~~~~~G~~-~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p 95 (345)
+.+..|..|.-++-||++ .+.+..+...+..+....+.+...+..++.+++ .+....+++..++..-
T Consensus 104 ~~~~~T~~e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g------------i~~~~~iii~~~iv~i 171 (483)
T PRK09442 104 KYNAVTLNDMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG------------ISYETGLLIFGITVAL 171 (483)
T ss_pred HcCCccHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------CCHHHHHHHHHHHHHH
Confidence 347899999999999865 466666666666666677777777777776653 1112223333334455
Q ss_pred hcccCCCCchhhHHHHHHHHHHHHhhheee----e--eccc---cc-ccCCcc-ccc--cCcchhhHHHh---hhhhhhc
Q 019141 96 LNSIPTLTHLAPLSIFADIVDLGAMGLVMV----E--DVMI---SM-KQRPAL-KAF--GDFSVFSYGIG---VAVYAFE 159 (345)
Q Consensus 96 l~~~~~l~~l~~~s~~~~~~~~~~~~~v~~----~--~~~~---~~-~~~~~~-~~~--~~~~~~~~~~~---~~~faf~ 159 (345)
......++...+.-.+=.+.++...+++.+ . +..+ .. +.+++. .+. .++.+.....+ ...++..
T Consensus 172 Yt~~GGl~av~~TD~iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 251 (483)
T PRK09442 172 YTAFGGFRAVVLTDALQGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVI 251 (483)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHh
Confidence 677777777777766554433333222211 1 1111 01 111111 111 01111111111 1223333
Q ss_pred ceeeeccchhhcccchhhhhhHHHHHHHHHHHHHHHhhhh---hheecC
Q 019141 160 GVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALG---YFAFGE 205 (345)
Q Consensus 160 ~~~~~~~i~~~m~~p~~~~~~~~~a~~i~~~~Y~~~g~~g---y~~fG~ 205 (345)
+++...+=.-..|++|+.+|...++......++....+.| ...+.+
T Consensus 252 ~~p~~~qR~~aaks~~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~ 300 (483)
T PRK09442 252 GLPHTAVRCMSYKDSKALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPD 300 (483)
T ss_pred CCCHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4433222222466778888888887766666666555544 444544
No 64
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.39 E-value=0.29 Score=47.36 Aligned_cols=60 Identities=15% Similarity=0.056 Sum_probs=44.2
Q ss_pred hhhHHHhhhhhhhcceeeeccchhhcccc-hhhhhhHHHHHHHHHHHHHHHhhhhhheecC
Q 019141 146 VFSYGIGVAVYAFEGVGMILPLESETRNK-QRFGRILGWCMAFISLLYGSFGALGYFAFGE 205 (345)
Q Consensus 146 ~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~ 205 (345)
++.-++-.-.+.+.|-..-+.+.+|-+|+ ++-+|.+..+..+..++=..+-+.-..+-++
T Consensus 253 afil~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~ 313 (550)
T KOG1289|consen 253 AFILGFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPD 313 (550)
T ss_pred HHHHhhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 56666667778888888899999999997 5578988888888877755544444444454
No 65
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=96.19 E-value=0.66 Score=43.63 Aligned_cols=135 Identities=16% Similarity=0.194 Sum_probs=69.0
Q ss_pred eccchh-hcccchhh-hhhHHHHH---HHHHHHHHHHhhhhhheec---Cc-cccceecccCCc----hHHHHHHHHHHH
Q 019141 164 ILPLES-ETRNKQRF-GRILGWCM---AFISLLYGSFGALGYFAFG---EE-TKDIITTNFGAG----LVSTLVNVGLCV 230 (345)
Q Consensus 164 ~~~i~~-~m~~p~~~-~~~~~~a~---~i~~~~Y~~~g~~gy~~fG---~~-~~~~i~~n~~~~----~~~~~~~~~~~i 230 (345)
+-.+.+ |+|||||. ++....+. .....+|.-.+..|...-+ +. .++.++.+..+. .-..+..+...+
T Consensus 200 v~~i~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~l 279 (378)
T TIGR00796 200 VNAIRSRGVTKPKKITKYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITL 279 (378)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHH
Confidence 344555 89888654 44444444 3444456666666654422 11 123333332221 122333344455
Q ss_pred HHHhhcccchhhHHHHHHhhhcccccchHHHHHHHHHHHHHHhhcCCccchhhhcchhhHHHHHHHHHHHHHHHH
Q 019141 231 NLFLTFPLMMNPVYEVVERRFCDYRYCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIV 305 (345)
Q Consensus 231 ~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~r~~~v~~~~~vA~~vp~~~~i~~l~Ga~~~~~l~filP~l~~~~~ 305 (345)
+.+++---....+.+.+++...+-+++.|.. ...+.+..++. -.++.++++ ....+.++.|...-+..
T Consensus 280 ACLtT~iGli~~~a~~f~~~~~k~~y~~~v~-~~~l~s~~ia~--~Gl~~Ii~~----~~PvL~~~YP~~i~lil 347 (378)
T TIGR00796 280 ACLTTAVGLTTACSEYFHKLVPKLSYKTWVI-VFTLFSFIVAN--LGLTQIISI----SIPVLMIIYPLAIVLIL 347 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHHHHH--hCHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 5555555555567777777765433333322 22223333333 267777775 47778888887775553
No 66
>PRK00701 manganese transport protein MntH; Reviewed
Probab=96.13 E-value=1.4 Score=42.45 Aligned_cols=48 Identities=10% Similarity=-0.166 Sum_probs=35.7
Q ss_pred CcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhh
Q 019141 19 KINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMI 66 (345)
Q Consensus 19 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~ 66 (345)
..++..|+.++-+||+..++..+...+.+.+..++..+..+.-++.++
T Consensus 92 TG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~ 139 (439)
T PRK00701 92 TGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLF 139 (439)
T ss_pred cCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788889899999888888777777777777777776665555443
No 67
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=96.01 E-value=0.012 Score=56.59 Aligned_cols=282 Identities=15% Similarity=0.019 Sum_probs=127.4
Q ss_pred CcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCc-cccc----ccccchhHHHHHHHHHH
Q 019141 19 KINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTS-QTIL----GFLSPKALYIWGCFPFQ 93 (345)
Q Consensus 19 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-~~~~----~~~~~~~~~~~i~~~~~ 93 (345)
...+.-.+.|..||.+|..+..+...+...|-........++.+..+.+..... ...+ ..........++..++.
T Consensus 69 ~Gl~~~v~sR~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~ 148 (440)
T PF02133_consen 69 TGLPTMVLSRASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQ 148 (440)
T ss_dssp C---HHHHTTTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHH
T ss_pred cCCCchhcchhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHH
Confidence 345777889999999999999999999999999999999999999988865331 0000 00001111111122222
Q ss_pred HhhcccCCCCchhhHHHHHHHHHHHHhhheeeeeccccc-ccCCccccccCcc-hhhHHHhhhhhhh-cceeeeccchhh
Q 019141 94 LGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISM-KQRPALKAFGDFS-VFSYGIGVAVYAF-EGVGMILPLESE 170 (345)
Q Consensus 94 ~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~faf-~~~~~~~~i~~~ 170 (345)
.+.. ....+.++.+............+...+....+.. .+..+.+...... .+..++....-.+ ..-.+.++..+.
T Consensus 149 ~~~~-~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy 227 (440)
T PF02133_consen 149 TLFA-IYGMKALRRLAVIAAPILLVVFIGMLIWALSKAGGGPLLSAPASPSPSGSFLAAIALVIGSWISWAPNASDYSRY 227 (440)
T ss_dssp HHHH-CTHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCT-HHHCCS--S----S-HHHHHHHHHCCCHHHHCCCHHHHTT
T ss_pred HHHH-hcCHHHHHhHHhhhhHHHHhhhhheeEEEeecCCcchhhhCcccchhHHHHHHHHHHHHhhhhhhhhccccHHhh
Confidence 2222 2233444444433333222221111111111100 0000000000110 2334433332222 223455688999
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHhhhhhhee----cCccccc--eecccCCchHHHHHHHHHH-HHHHhhcccchhhH
Q 019141 171 TRNKQRFGRILGWCMAFISLLYGSFGALGYFAF----GEETKDI--ITTNFGAGLVSTLVNVGLC-VNLFLTFPLMMNPV 243 (345)
Q Consensus 171 m~~p~~~~~~~~~a~~i~~~~Y~~~g~~gy~~f----G~~~~~~--i~~n~~~~~~~~~~~~~~~-i~~~~s~pl~~~p~ 243 (345)
+|++++-.+....+..........+|..|...- +++.-+. ++.++.+.....+.-+... ....+..-...++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~g~lg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~i~~~~~~~~~~~n~ys~ 307 (440)
T PF02133_consen 228 AKSDTSAWWGFWLGFPGGFIPFVLVGILGAAAGGIADGEPIWDPLQILGAFLPPFGGFFPALLILFASIWTNNAANLYSA 307 (440)
T ss_dssp C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHTS--HHHHHHHHH-HHHHHHHTTHHHHHTHHH
T ss_pred CCCCCCcEEEEeehhhhHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhHhhH
Confidence 999888777778888777777777776654443 3322121 2222222211111111222 12223334556677
Q ss_pred HHHHHhhhcccccchHHHHHHHHHHHHHHh--hcCC----ccchhhhcchhhHHHHHHHHHHHH
Q 019141 244 YEVVERRFCDYRYCLWLRWAVVLGVSLVAL--LVPN----FADFLSLVGSSVCCILGFVLPALF 301 (345)
Q Consensus 244 ~~~l~~~~~~~~~~~~~r~~~v~~~~~vA~--~vp~----~~~i~~l~Ga~~~~~l~filP~l~ 301 (345)
...+.+..+++-.++..+....+.....+. ...+ +.+.+++.|.........++==.+
T Consensus 308 ~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~f~~fL~~lg~~~~P~~gI~i~Dy~ 371 (440)
T PF02133_consen 308 GLALQNIFPKRISRRRGVIIVGVIGIAIAPWGLLGNFSFLFTNFLSLLGYFLGPWAGIMIADYF 371 (440)
T ss_dssp HHHHHCCSTTT--HHHHHHHHHHHHHCT-GGGTCCCCHC----HCCCCCHTTHHHHHHHHHHHH
T ss_pred HHHHHHccceeecchHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHhchhHHHHHHHHHH
Confidence 777777766221111112222222222222 2233 566888888888887776654433
No 68
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=95.70 E-value=0.031 Score=46.88 Aligned_cols=155 Identities=14% Similarity=0.100 Sum_probs=93.8
Q ss_pred CcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccc-----------cccc---cch--
Q 019141 19 KINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTI-----------LGFL---SPK-- 82 (345)
Q Consensus 19 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~-----------~~~~---~~~-- 82 (345)
+...-+|++.+.|.|.+-.+..+++++++||....|.-..--+..++.......+.| +.+| .+|
T Consensus 128 dkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmd 207 (319)
T KOG3832|consen 128 DKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAMNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMD 207 (319)
T ss_pred hhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhhhhhhhhcCCccccccCCcccccccccchHHHhhhH
Confidence 455778899999999999999999999999999999877666655554432111111 1111 122
Q ss_pred --hHHHHHH-HHHHHhhcccCCCCchhhHHHHHHHHHHHHhhheeeeeccc-ccccCCccccccCcchhhHHHhhhhhhh
Q 019141 83 --ALYIWGC-FPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMI-SMKQRPALKAFGDFSVFSYGIGVAVYAF 158 (345)
Q Consensus 83 --~~~~~i~-~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~faf 158 (345)
+++++++ .++.+|+.+. ++++.+++-.+..+.-+......+...-.+ .....+.++....+-++-..++.-.|+|
T Consensus 208 ayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~~g~~l~tmqaeedaa~a~p~arc~cgfgkl~~~aly~~ 286 (319)
T KOG3832|consen 208 AYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFILGISLATMQAEEDAAAAHPPARCFCGFGKLFGCALYAF 286 (319)
T ss_pred HHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhccchhhhhhhhhcccccccCCccccccccccccchhhHHH
Confidence 3444444 3444677664 355666666655555554443322211111 1111122222224445567788899999
Q ss_pred cceeeeccchhhcccc
Q 019141 159 EGVGMILPLESETRNK 174 (345)
Q Consensus 159 ~~~~~~~~i~~~m~~p 174 (345)
.+|.+.|.....++.+
T Consensus 287 ~a~cmapda~gagq~k 302 (319)
T KOG3832|consen 287 MAHCMAPDAIGAGQTK 302 (319)
T ss_pred HhhccCCCCCCCCeec
Confidence 9999999998888764
No 69
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=95.64 E-value=2.1 Score=40.72 Aligned_cols=300 Identities=12% Similarity=-0.042 Sum_probs=143.5
Q ss_pred cCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHHhhccc
Q 019141 20 INSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSI 99 (345)
Q Consensus 20 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~ 99 (345)
.++..|..++-|+++..++..+...+....+.++-.+..+--++-++.- +...-..+.++..+-....
T Consensus 76 G~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~i------------p~~~g~iItav~~~iil~~ 143 (416)
T COG1914 76 GKGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFGI------------PLIIGAVITAVDVLIILLL 143 (416)
T ss_pred CCcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHHHHHHh
Confidence 4577888888899999999999999999999999998888777766542 1122222222222222222
Q ss_pred CCCCchhhHHHHHHHHHHHHhhheeeeecccccc-cCC-ccccccCcchhhHHHhhh------hhhhcceeeecc-chhh
Q 019141 100 PTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMK-QRP-ALKAFGDFSVFSYGIGVA------VYAFEGVGMILP-LESE 170 (345)
Q Consensus 100 ~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~------~faf~~~~~~~~-i~~~ 170 (345)
+..+.+..+...-.+.+..+.........+.... ... -.+..++........+++ --.|.++..+-+ ..++
T Consensus 144 ~~~r~~E~~v~~l~~~~~i~~~~~~~~~~p~~~~~~~~~f~P~~~~~~~l~~ii~ilGaTVmP~i~y~~s~~v~~~~~~~ 223 (416)
T COG1914 144 KGYRLLERVVLILGLVLVILFVYVAFVAPPPWGEVAKGDFLPSSPWTEALLLIIAILGATVMPHILYLHSSLVQDAGIKG 223 (416)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHhccCCCCCCcchhHHHHHHHHhccchhHHHHHhhcceeccccccc
Confidence 2455555554433333333333333322222110 011 111111111122222221 112222232222 1011
Q ss_pred cccchhhhh---hHHHHHHHHHHHHHHHhhhhhheecCccc-cceecccC-----CchHHHHHHHHHHHHH----Hhhcc
Q 019141 171 TRNKQRFGR---ILGWCMAFISLLYGSFGALGYFAFGEETK-DIITTNFG-----AGLVSTLVNVGLCVNL----FLTFP 237 (345)
Q Consensus 171 m~~p~~~~~---~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~-~~i~~n~~-----~~~~~~~~~~~~~i~~----~~s~p 237 (345)
=+++++.++ ...+++....++...+-......|..+.+ ++.-.-.+ .......+...+.+.+ ..+..
T Consensus 224 ~~~~~~~~~~~~d~~i~~~~a~lv~~ail~~aa~~~~~~~~~~~~~~~~~a~~~l~~~~G~~~~~lF~v~llasg~~s~~ 303 (416)
T COG1914 224 EENLRALRYSRIDTIIGMIIALLVNLAILIVAAAGFHNSGPNQDVADAYDAYLLLAPLLGSAAFVLFGVALLAAGLSSTV 303 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHH
Confidence 111222222 34555555566655555555555543332 22211111 1111222222222222 23333
Q ss_pred cchhhHHHHHHhhhccc--c--cchHHHHHHHHHHHHHHhhcCCccchhhhcchhhHHHHHHHHHHHHHHHHhcc---c-
Q 019141 238 LMMNPVYEVVERRFCDY--R--YCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQ---E- 309 (345)
Q Consensus 238 l~~~p~~~~l~~~~~~~--~--~~~~~r~~~v~~~~~vA~~vp~~~~i~~l~Ga~~~~~l~filP~l~~~~~~~~---~- 309 (345)
.........++...+.+ + ++...|....+.+..+.+..-+...++.+.+.+.+..+-+..+.++.+-.+|+ +
T Consensus 304 ~~~~a~~~~~~g~~~~~~~~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~ 383 (416)
T COG1914 304 VATYAGQIVMEGFLNWRIPLWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDY 383 (416)
T ss_pred HHhhhhHHHHHhhhcccCchHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcc
Confidence 33333334455554421 2 22335555555555554444489999999988888888888888888777764 2
Q ss_pred -CChhhHhhhhhhhhhhHHHHHH
Q 019141 310 -LGWNGIVMDAALLVFGVVIGIS 331 (345)
Q Consensus 310 -~~~~~~~~~~~~i~~g~~~~v~ 331 (345)
-++|.+...|...++=....+.
T Consensus 384 ~~~~~~~~~~~~v~~~i~~L~i~ 406 (416)
T COG1914 384 KNPRWLTVLGWIVVILIVALNII 406 (416)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 2345555555555444433333
No 70
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=95.44 E-value=2.9 Score=40.98 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=45.8
Q ss_pred CCCcCChhhhhHHhhc-cchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhh
Q 019141 17 FSKINSFGDLGYTVCG-SVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMIN 67 (345)
Q Consensus 17 ~~~~~~y~~l~~~~~G-~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~ 67 (345)
+.+..|..|.-++-|| ++.|.+..+...+....-+.+.++..+..++..++
T Consensus 101 ~~~~~T~~d~l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g 152 (493)
T COG0591 101 ARGATTIPDFLEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG 152 (493)
T ss_pred ccCCccHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 3478999999999999 99999999999999999999999999998866655
No 71
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=95.16 E-value=3.8 Score=40.72 Aligned_cols=86 Identities=6% Similarity=-0.091 Sum_probs=53.5
Q ss_pred cCCCCcCChhhhhHHhhc-cchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHH
Q 019141 15 HGFSKINSFGDLGYTVCG-SVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQ 93 (345)
Q Consensus 15 ~~~~~~~~y~~l~~~~~G-~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 93 (345)
.++.+..|..|.-+.=|| |..|.+..+...+....-....+...+..++.+++- +...-+++...+.
T Consensus 124 lrr~g~~T~~d~l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi------------~~~~~iii~~~i~ 191 (549)
T TIGR02711 124 LRNLGRYTFADVASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGL------------NYHVAVVLVGILM 191 (549)
T ss_pred HHHcCCccHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHH
Confidence 334467899999888887 556888777777776666777777777777666541 1122223333334
Q ss_pred HhhcccCCCCchhhHHHHH
Q 019141 94 LGLNSIPTLTHLAPLSIFA 112 (345)
Q Consensus 94 ~pl~~~~~l~~l~~~s~~~ 112 (345)
.--.....++...+.-.+=
T Consensus 192 ~~Yt~~GGm~av~~td~iQ 210 (549)
T TIGR02711 192 VMYVLFGGMLATTWVQIIK 210 (549)
T ss_pred HHHHHhhhhHHHHHHHHHH
Confidence 4455566666666665443
No 72
>PRK09395 actP acetate permease; Provisional
Probab=94.96 E-value=4.4 Score=40.33 Aligned_cols=89 Identities=6% Similarity=-0.095 Sum_probs=56.5
Q ss_pred hhcCCCCcCChhhhhHHhhc-cchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHH
Q 019141 13 TIHGFSKINSFGDLGYTVCG-SVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFP 91 (345)
Q Consensus 13 ~~~~~~~~~~y~~l~~~~~G-~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 91 (345)
++.++.+..|+.|.-+.=|| |+.|.+..+...+....-..+.+...+..++.+++ .+...-+++..+
T Consensus 124 ~~~r~~g~~T~~d~l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g------------i~~~~~ili~~~ 191 (551)
T PRK09395 124 ERLRNLGKYTFADVASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG------------LNYHVAVVLVGV 191 (551)
T ss_pred HHHhhCCCccHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------CCHHHHHHHHHH
Confidence 34445578999999999998 45788888877776666667777777776666643 111222333333
Q ss_pred HHHhhcccCCCCchhhHHHHHH
Q 019141 92 FQLGLNSIPTLTHLAPLSIFAD 113 (345)
Q Consensus 92 ~~~pl~~~~~l~~l~~~s~~~~ 113 (345)
+..-......++...|.-.+=.
T Consensus 192 i~~iYt~~GGm~av~~TD~iQ~ 213 (551)
T PRK09395 192 LMMVYVLFGGMLATTWVQIIKA 213 (551)
T ss_pred HHHHHHhhcchHHHHHHHHHHH
Confidence 4444566667777666665443
No 73
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=94.66 E-value=4.9 Score=39.48 Aligned_cols=86 Identities=10% Similarity=0.060 Sum_probs=48.6
Q ss_pred CCcCChhhhhHHhhccchhh---HHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHH
Q 019141 18 SKINSFGDLGYTVCGSVGRV---AVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQL 94 (345)
Q Consensus 18 ~~~~~y~~l~~~~~G~~~~~---~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 94 (345)
.+..|..|.-++=||++.|. +..+...+....-+.+.+...+..++.+++ .+....+++...+..
T Consensus 105 ~~~~T~~e~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g------------i~~~~~iii~~~iv~ 172 (502)
T PRK15419 105 NNALTLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG------------MSYETALWAGAAATI 172 (502)
T ss_pred cCceeHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------CCHHHHHHHHHHHHH
Confidence 46789999999999875444 444444444444445555555666655543 111223333344445
Q ss_pred hhcccCCCCchhhHHHHHHHH
Q 019141 95 GLNSIPTLTHLAPLSIFADIV 115 (345)
Q Consensus 95 pl~~~~~l~~l~~~s~~~~~~ 115 (345)
--.....++...+.-.+=.+.
T Consensus 173 iYt~~GGl~aV~~TD~iQ~~i 193 (502)
T PRK15419 173 LYTFIGGFLAVSWTDTVQASL 193 (502)
T ss_pred HHHHhhhHHHHHHHHHHHHHH
Confidence 556667777777666554433
No 74
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=94.45 E-value=3.3 Score=38.68 Aligned_cols=86 Identities=14% Similarity=-0.040 Sum_probs=55.0
Q ss_pred CcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHHhhcc
Q 019141 19 KINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNS 98 (345)
Q Consensus 19 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~ 98 (345)
..++..|..++-+||+..+...+...+.+....++-.+..+.-++-++ . .+...+..+..+..+-+.+
T Consensus 40 Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~-g-----------~~~~~~~~~~~~~~~~ll~ 107 (358)
T PF01566_consen 40 TGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF-G-----------IPLWIWVLLVAVIAILLLW 107 (358)
T ss_pred cCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C-----------CCcHHHHHHHHHHHHHHHH
Confidence 456788888888999999999998888888888888877777666554 2 1123333332222222223
Q ss_pred --cCCCCchhhHHHHHHHHH
Q 019141 99 --IPTLTHLAPLSIFADIVD 116 (345)
Q Consensus 99 --~~~l~~l~~~s~~~~~~~ 116 (345)
.++.+.+..+...-...+
T Consensus 108 ~~~~~y~~~E~~~~~lv~~m 127 (358)
T PF01566_consen 108 LSSGGYRRLERILKVLVAVM 127 (358)
T ss_pred HHhccchHHHHHHHHHHHHH
Confidence 566677766665444444
No 75
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=93.67 E-value=7.6 Score=37.96 Aligned_cols=86 Identities=6% Similarity=-0.084 Sum_probs=46.0
Q ss_pred CCcCChhhhhHHhhccchhh---HHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHH
Q 019141 18 SKINSFGDLGYTVCGSVGRV---AVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQL 94 (345)
Q Consensus 18 ~~~~~y~~l~~~~~G~~~~~---~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 94 (345)
.+..|..|.-+.=||++.|. +..+...+....-....+...+..++.+++- +...-+++...+..
T Consensus 101 ~~~~T~~e~l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi------------~~~~~iii~~~i~~ 168 (487)
T TIGR02121 101 HNSITLPDFFENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGL------------DYKTGLLIGALIIV 168 (487)
T ss_pred cCCccHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------------cHHHHHHHHHHHHH
Confidence 46788999999999965443 3444444444444455555566666555431 11222233333334
Q ss_pred hhcccCCCCchhhHHHHHHHH
Q 019141 95 GLNSIPTLTHLAPLSIFADIV 115 (345)
Q Consensus 95 pl~~~~~l~~l~~~s~~~~~~ 115 (345)
--.....++...+.-.+=.+.
T Consensus 169 ~Yt~~GGl~av~~TD~iQ~~i 189 (487)
T TIGR02121 169 IYTFFGGFLAVSWTDFVQGLL 189 (487)
T ss_pred HHHHhhhHHHHHHHHHHHHHH
Confidence 445566666666665544333
No 76
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=90.53 E-value=20 Score=35.72 Aligned_cols=88 Identities=3% Similarity=-0.105 Sum_probs=54.7
Q ss_pred hcCCCCcCChhhhhHHhhccc-hhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHH
Q 019141 14 IHGFSKINSFGDLGYTVCGSV-GRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPF 92 (345)
Q Consensus 14 ~~~~~~~~~y~~l~~~~~G~~-~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 92 (345)
+.++.+..|..|.-+.=||++ .|.+..+...+....-....+...+..++.+.+- +...-+++..++
T Consensus 88 ~~rr~~~~T~~e~l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi------------~~~~~iii~~~i 155 (552)
T TIGR03648 88 YLRKFGKYTVPDFIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEV------------DFETGVFIGMAI 155 (552)
T ss_pred HHHHCCCccHHHHHHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHH
Confidence 334457788889888888855 5777777777777777777777777777666541 112222333333
Q ss_pred HHhhcccCCCCchhhHHHHHH
Q 019141 93 QLGLNSIPTLTHLAPLSIFAD 113 (345)
Q Consensus 93 ~~pl~~~~~l~~l~~~s~~~~ 113 (345)
..-......++...|.-.+=.
T Consensus 156 ~~iYt~~GG~~aV~~TD~iQ~ 176 (552)
T TIGR03648 156 VFFYAVLGGMKGVTWTQVAQY 176 (552)
T ss_pred HHHHHHhhhHHHHHHHHHHHH
Confidence 444556666666666655443
No 77
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=87.81 E-value=25 Score=33.30 Aligned_cols=100 Identities=14% Similarity=-0.006 Sum_probs=53.5
Q ss_pred hhhhhcCCCCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHH-
Q 019141 10 KLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWG- 88 (345)
Q Consensus 10 ~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i- 88 (345)
++..|...-..++..|+.++-++|+.++...+...+...+...+..+..+.-++-+++. +......+
T Consensus 53 ~~aaRlg~vTg~~l~~~~r~~~~~~~~~~~~~~~~l~ii~~~~~e~~G~a~al~ll~g~------------p~~~~v~~~ 120 (390)
T TIGR01197 53 RLCARLGVVTGLDLAEVCREHYPKVPRITLWILAELAIIATDMAEVIGTAIALNLLSHI------------PLWGGVLIT 120 (390)
T ss_pred HHHHHheeecCCCHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------------cHHHHHHHH
Confidence 33333333345788999999999888777766666655666555555555555444331 11222221
Q ss_pred -HHHHHHhhcccCCCCchhhHHHHHHHHHHHHhh
Q 019141 89 -CFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMG 121 (345)
Q Consensus 89 -~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~ 121 (345)
...+.+.+...++.+.+..+-..-...+..++.
T Consensus 121 ~~~~~~~~~~~~~~yr~~E~~~~~lv~~m~~~f~ 154 (390)
T TIGR01197 121 IVDVFLFLFLDKPGLRILEAFVALLVTIVAICFA 154 (390)
T ss_pred HHHHHHHHHHHhCCceeHHHHHHHHHHHHHHHHH
Confidence 222333344456677777664443333333333
No 78
>PRK10484 putative transporter; Provisional
Probab=87.35 E-value=32 Score=33.98 Aligned_cols=94 Identities=12% Similarity=0.046 Sum_probs=48.5
Q ss_pred CCCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHH-hhHHHhhhc--cCCcccccccccchhHHH--HHHHH
Q 019141 17 FSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIA-NTLTHMINN--STTSQTILGFLSPKALYI--WGCFP 91 (345)
Q Consensus 17 ~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~-~~l~~~~~~--~~~~~~~~~~~~~~~~~~--~i~~~ 91 (345)
+.+..|..|.-|+-||++.+........+.......+.....+ ..+..++.. ..+- + .....++ ++..+
T Consensus 97 r~~~~T~~e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi---~---~~~~~~~~~~~~~~ 170 (523)
T PRK10484 97 KSGITTIPDFLEERYDKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELLGI---S---YGAAIWLLVWLIGI 170 (523)
T ss_pred hcCCccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCC---c---HHHHHHHHHHHHHH
Confidence 4578899999999999988877766655544443333332222 223332211 0111 0 0011111 12223
Q ss_pred HHHhhcccCCCCchhhHHHHHHHHH
Q 019141 92 FQLGLNSIPTLTHLAPLSIFADIVD 116 (345)
Q Consensus 92 ~~~pl~~~~~l~~l~~~s~~~~~~~ 116 (345)
+..-......++...+.-.+=.+.+
T Consensus 171 i~~~Yt~~GGl~aV~~TD~iQ~vim 195 (523)
T PRK10484 171 IGAIYAVFGGLKAVAVSDTINGIGL 195 (523)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 3344566777777777766554443
No 79
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=86.61 E-value=33 Score=33.37 Aligned_cols=142 Identities=16% Similarity=0.166 Sum_probs=73.0
Q ss_pred eeeeccchhhcccchhhhhhHHHHHHHHHHHHHHHhh----hhhheecCcc--ccceecccCCchHHH-HHHHHHHHHHH
Q 019141 161 VGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGA----LGYFAFGEET--KDIITTNFGAGLVST-LVNVGLCVNLF 233 (345)
Q Consensus 161 ~~~~~~i~~~m~~p~~~~~~~~~a~~i~~~~Y~~~g~----~gy~~fG~~~--~~~i~~n~~~~~~~~-~~~~~~~i~~~ 233 (345)
--|+|+.-+.-|+||+-.+--.+++-+.+.+..++|+ ..+..||++. ..++..++++..... ++-+.+++..+
T Consensus 257 ~lN~~DFsRfa~s~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~iati 336 (497)
T COG1953 257 ALNIPDFTRFAKSQKAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAVATI 336 (497)
T ss_pred hcCCchhhcccCChhhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 5678888888888776655556666666666665554 4677799885 456778887654443 33333333322
Q ss_pred h-hcccchhhHHHHHHhhhcccccchHHHHHHHHHHHHHHhhcC--------CccchhhhcchhhHHHHHHHHHHHHHHH
Q 019141 234 L-TFPLMMNPVYEVVERRFCDYRYCLWLRWAVVLGVSLVALLVP--------NFADFLSLVGSSVCCILGFVLPALFHLI 304 (345)
Q Consensus 234 ~-s~pl~~~p~~~~l~~~~~~~~~~~~~r~~~v~~~~~vA~~vp--------~~~~i~~l~Ga~~~~~l~filP~l~~~~ 304 (345)
. ...-...+...=+.+.+.+.-. +.|-.++..+..+++ .| .+...++..|++.++....++-- |+.
T Consensus 337 ~~Ni~aN~vsp~~D~s~l~Pk~in--~krg~liaA~ial~~-~PW~l~~s~s~f~~~L~~yg~~LgpiaGVmiaD--yfl 411 (497)
T COG1953 337 STNIAANIVSPGYDLSALFPKYIN--IKRGGLIAAIIALLI-CPWNLLESSSSFTTFLGSYGVFLGPIAGVMIAD--YFL 411 (497)
T ss_pred hhhHHhccCChHHHHHHhcccccc--hhhhHHHHHHHHHHH-cChHHHcCccHHHHHHHHHHHHHHHHHHHHHHH--HHh
Confidence 2 1122222222223333322111 223333322222211 23 35566666677777766654433 344
Q ss_pred Hhc
Q 019141 305 VFK 307 (345)
Q Consensus 305 ~~~ 307 (345)
.||
T Consensus 412 irk 414 (497)
T COG1953 412 VRK 414 (497)
T ss_pred hhc
Confidence 444
No 80
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=85.85 E-value=23 Score=33.94 Aligned_cols=120 Identities=17% Similarity=0.249 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhheecC---cc-ccceecccCCchH----HHHHHHHHHHHHHhhcccchhhHHHHHHhh
Q 019141 179 RILGWCMAFISLLYGSFGALGYFAFGE---ET-KDIITTNFGAGLV----STLVNVGLCVNLFLTFPLMMNPVYEVVERR 250 (345)
Q Consensus 179 ~~~~~a~~i~~~~Y~~~g~~gy~~fG~---~~-~~~i~~n~~~~~~----~~~~~~~~~i~~~~s~pl~~~p~~~~l~~~ 250 (345)
++-.++.....++|...+..|...-+. +. .+.++.+..+..+ ..+..+.+.++.+++--=....+.+.+++.
T Consensus 226 ~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~ 305 (427)
T PF05525_consen 226 KAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSEL 305 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777888888887766543 22 2344444433222 233334445555565555677888899988
Q ss_pred hcccccchHHHHHHHHHHHHHHhhcCCccchhhhcchhhHHHHHHHHHHHHHHHH
Q 019141 251 FCDYRYCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIV 305 (345)
Q Consensus 251 ~~~~~~~~~~r~~~v~~~~~vA~~vp~~~~i~~l~Ga~~~~~l~filP~l~~~~~ 305 (345)
.+|-+++.|..... +.+.++|. =.++.++++. ...+.++.|...-+..
T Consensus 306 ~~kisY~~~v~i~~-i~S~~ian--~Gl~~Ii~~s----~PiL~~iYP~~IvLIl 353 (427)
T PF05525_consen 306 FPKISYKVWVIIFT-IFSFIIAN--LGLDQIIKIS----VPILMFIYPVAIVLIL 353 (427)
T ss_pred hcccChHHHHHHHH-HHHHHHHH--hCHHHHHHHH----HHHHHHHhHHHHHHHH
Confidence 88555666533322 22333332 2455666654 7788899998887665
No 81
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=85.16 E-value=13 Score=36.78 Aligned_cols=101 Identities=10% Similarity=0.082 Sum_probs=51.4
Q ss_pred HhhcccCCCCchhhHHHHHHHHHHHHhhheeeeec--c---cccc--cCCccccccCcchhhHHHhhhhhhhcc-eeeec
Q 019141 94 LGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDV--M---ISMK--QRPALKAFGDFSVFSYGIGVAVYAFEG-VGMIL 165 (345)
Q Consensus 94 ~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~--~---~~~~--~~~~~~~~~~~~~~~~~~~~~~faf~~-~~~~~ 165 (345)
.-+...|.+++.+.+..+....-.....+.+++.. + ++.+ -.||+....+..-...+++-..|+.+. .+.+.
T Consensus 191 v~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~i 270 (523)
T PF00209_consen 191 VFFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLLDPKVWIAALGQVFFSLSIGFGIMI 270 (523)
T ss_dssp HTTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTTSHHHHHHHHHHHHHHTTTTSSHHH
T ss_pred HHHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhhHHHHHHHHHHHHhhccCCCcceEE
Confidence 34566777777777666554311111111222211 1 1111 124444443554457788888888854 66667
Q ss_pred cchhhcccchhhhhhHHHHHHHHHHHHHH
Q 019141 166 PLESETRNKQRFGRILGWCMAFISLLYGS 194 (345)
Q Consensus 166 ~i~~~m~~p~~~~~~~~~a~~i~~~~Y~~ 194 (345)
..-+.+++.++..|........-....++
T Consensus 271 t~~Sy~~~~~n~~~~a~~v~~~~~~~sll 299 (523)
T PF00209_consen 271 TYGSYNKFKNNIFRDALIVAFINTLVSLL 299 (523)
T ss_dssp HHHTTS-TTS-SHHHHHHHHHHHHHHHHT
T ss_pred EEcCcCCCCccccccceEEEcCchhhhHh
Confidence 77778887777776554444444444433
No 82
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=82.04 E-value=4.2 Score=38.29 Aligned_cols=49 Identities=14% Similarity=0.189 Sum_probs=44.3
Q ss_pred CcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhh
Q 019141 19 KINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMIN 67 (345)
Q Consensus 19 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~ 67 (345)
+..-..+++++.||+.|+.+..+.+.+.|++++++.....+|..++..+
T Consensus 253 ~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~ 301 (378)
T TIGR00796 253 GAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP 301 (378)
T ss_pred cHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4556678899999999999999999999999999999999999888755
No 83
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=80.24 E-value=59 Score=31.50 Aligned_cols=176 Identities=7% Similarity=-0.031 Sum_probs=97.9
Q ss_pred cCCCCcCChhhhhHH-hhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHH
Q 019141 15 HGFSKINSFGDLGYT-VCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQ 93 (345)
Q Consensus 15 ~~~~~~~~y~~l~~~-~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 93 (345)
.|+-+..|..|.... .--++.|++..+..++-.+.-.++.+...|..+.-+++.... .-+.+..+++
T Consensus 98 LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv~~~------------vgv~ig~ilm 165 (529)
T COG4147 98 LRKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGVPYH------------VGVVIGGILM 165 (529)
T ss_pred HHhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCce------------eehhhHhHHH
Confidence 334477888886554 445678898888888888888899999999988888773211 1122233334
Q ss_pred HhhcccCCCCchhhHHHHHHHHHHH----Hhhheeeeeccccc---------c--c-CCc-cccccCcchhhHHHhhhhh
Q 019141 94 LGLNSIPTLTHLAPLSIFADIVDLG----AMGLVMVEDVMISM---------K--Q-RPA-LKAFGDFSVFSYGIGVAVY 156 (345)
Q Consensus 94 ~pl~~~~~l~~l~~~s~~~~~~~~~----~~~~v~~~~~~~~~---------~--~-~~~-~~~~~~~~~~~~~~~~~~f 156 (345)
.-......++..+|...+=.+..+. ..+.+..+-..++. + + +.+ .++-...++-.+.++...-
T Consensus 166 ~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~a 245 (529)
T COG4147 166 MVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFA 245 (529)
T ss_pred HHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHH
Confidence 4456677788888877543322221 11111111111100 0 0 001 1111111222333333332
Q ss_pred hhcceeeeccchhhc---ccchhhhhhHHHHHHHHHHHHHHHhhhhhhe
Q 019141 157 AFEGVGMILPLESET---RNKQRFGRILGWCMAFISLLYGSFGALGYFA 202 (345)
Q Consensus 157 af~~~~~~~~i~~~m---~~p~~~~~~~~~a~~i~~~~Y~~~g~~gy~~ 202 (345)
=..|..-.|.+.-.- ++-|+-||.+.++......+|+..-..|+.+
T Consensus 246 Lm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A 294 (529)
T COG4147 246 LMVGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILTPIIGAGA 294 (529)
T ss_pred HHHccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455554332 2347788999999999999999877666544
No 84
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=78.93 E-value=13 Score=34.60 Aligned_cols=90 Identities=17% Similarity=0.138 Sum_probs=58.1
Q ss_pred CcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHHhhcc
Q 019141 19 KINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNS 98 (345)
Q Consensus 19 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~ 98 (345)
+-+|.+|++++..||++|.+..+...+.+.-...++.....+.+.+.-. .....++.+.....+....
T Consensus 112 ~G~Si~~i~~~~lG~~~~~lf~~f~~~~lilV~avF~~v~a~~~~~~p~------------~~~~~~~~I~~Ai~~G~~~ 179 (376)
T PF02554_consen 112 KGKSIGEIAGKYLGKRAKKLFLIFIFFLLILVIAVFADVVANTFVNSPW------------AATSSLLFIPIAILFGLLV 179 (376)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh------------HHHHHHHHHHHHHHHhHhh
Confidence 6689999999999999999999999999888888888777766533111 1112223333333344444
Q ss_pred cCCCCchhhHHHHHHHHHHHHh
Q 019141 99 IPTLTHLAPLSIFADIVDLGAM 120 (345)
Q Consensus 99 ~~~l~~l~~~s~~~~~~~~~~~ 120 (345)
-|+=.++...+.+++..+...+
T Consensus 180 y~~~~~~~~~t~i~vvll~~~v 201 (376)
T PF02554_consen 180 YKRGGNLGPATIIGVVLLLLAV 201 (376)
T ss_pred eecCCchHhhHHHHHHHHHHHH
Confidence 4444455666666665554443
No 85
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=78.90 E-value=64 Score=31.12 Aligned_cols=133 Identities=11% Similarity=-0.022 Sum_probs=79.4
Q ss_pred cCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHHhhccc
Q 019141 20 INSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSI 99 (345)
Q Consensus 20 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~ 99 (345)
-+...|.++.-+-||.++...++.=+...++-+.-.|.-+-.+.-+.+ .+ ...-+.+.+.=.+.+++..-
T Consensus 88 G~hLAe~Cr~~Ypk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAlniL~~---IP-------L~~GVliTilD~f~fL~l~k 157 (503)
T KOG1291|consen 88 GKHLAEICREEYPKWPRMVLWIMAEIAIIASDIQEVIGTAIALNILSN---IP-------LWAGVLITILDTFLFLFLDK 157 (503)
T ss_pred cHHHHHHHHHHccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhC---Cc-------HHHHHHHHHHHHHHHHHHhc
Confidence 345667777778889999888888888888888777776666655555 11 11123333333445556666
Q ss_pred CCCCchhhHHHHHHHHHHHHhhheeeeeccccccc-----CCccccccCcchhhHHHhhhhhhhcceee
Q 019141 100 PTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQ-----RPALKAFGDFSVFSYGIGVAVYAFEGVGM 163 (345)
Q Consensus 100 ~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~faf~~~~~ 163 (345)
..++++..+-.+.+..+.+++.....+.-+...+. -|....+ +-.+..++.|+.=-.=.-|+.
T Consensus 158 yGiRklE~~~~~Li~~mai~F~~el~~~kp~~~~~l~g~fvP~~~~~-~~~~~~~avgilGA~IMPHnl 225 (503)
T KOG1291|consen 158 YGIRKLEAFFAFLIVTMAISFGVELGVSKPSGGELLFGGFVPSLSGC-GSEGLYQAVGILGAVIMPHNL 225 (503)
T ss_pred cchHHHHHHHHHHHHHHHHHHheeEEEecCCchheeeeeecccccCC-CCcHHHHHHHHhceeeccchh
Confidence 67888887777777777777776666554431110 1222222 244677788775433333443
No 86
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=78.19 E-value=54 Score=33.35 Aligned_cols=55 Identities=16% Similarity=0.077 Sum_probs=41.9
Q ss_pred chhhHHHhhhhhhhcceeeeccchhhcccchh-hhhhHHHHHHHHHHHHHHHhhhh
Q 019141 145 SVFSYGIGVAVYAFEGVGMILPLESETRNKQR-FGRILGWCMAFISLLYGSFGALG 199 (345)
Q Consensus 145 ~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~~a~~i~~~~Y~~~g~~g 199 (345)
.++...|+++.-+-.|.-.=-..-.|+|+|.| .+|-...+....++.|.++.+.-
T Consensus 294 ~~F~~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm 349 (945)
T KOG1288|consen 294 EDFASTFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLM 349 (945)
T ss_pred eehhhhheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHh
Confidence 35666777776666555444567789999955 89999999999999999987753
No 87
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=77.83 E-value=7.5 Score=37.17 Aligned_cols=49 Identities=12% Similarity=0.259 Sum_probs=44.4
Q ss_pred CcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhh
Q 019141 19 KINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMIN 67 (345)
Q Consensus 19 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~ 67 (345)
+..-..+++++.+|+.|..+..+++.+.|+-++++-....+|..++..+
T Consensus 259 g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~ 307 (427)
T PF05525_consen 259 GAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFP 307 (427)
T ss_pred HHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445667889999999999999999999999999999999999999887
No 88
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=74.37 E-value=84 Score=30.17 Aligned_cols=48 Identities=19% Similarity=0.307 Sum_probs=31.5
Q ss_pred CccccccCcchhhHHHhhhhhhhc-ceeeeccchhhcccchhhhhhHHH
Q 019141 136 PALKAFGDFSVFSYGIGVAVYAFE-GVGMILPLESETRNKQRFGRILGW 183 (345)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~faf~-~~~~~~~i~~~m~~p~~~~~~~~~ 183 (345)
||.....|++.+..+.|-..|+.. |-..+.+.-+.++|+++..+....
T Consensus 205 PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k~~~l~~sa~~ 253 (439)
T COG0733 205 PDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSKKSDLVSSALS 253 (439)
T ss_pred CCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHHH
Confidence 455444456667788888887773 345556677788888887764333
No 89
>TIGR00945 tatC Twin arginine targeting (Tat) protein translocase TatC. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=73.28 E-value=32 Score=29.59 Aligned_cols=42 Identities=14% Similarity=0.301 Sum_probs=34.6
Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhcccccch
Q 019141 217 AGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYCL 258 (345)
Q Consensus 217 ~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~ 258 (345)
.+....-.++...++...+.|...+-.-..+...+.+++++.
T Consensus 54 ~e~f~~~lk~s~~~g~~~~~P~i~yqiw~Fi~PgLy~~Er~~ 95 (215)
T TIGR00945 54 TEPFFTYIKLSLIVGIILSSPVILYQIWAFILPGLYEHERRL 95 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 357788889999999999999999988888888887766553
No 90
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=69.47 E-value=17 Score=34.44 Aligned_cols=66 Identities=11% Similarity=0.120 Sum_probs=52.0
Q ss_pred CcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHHh
Q 019141 19 KINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLG 95 (345)
Q Consensus 19 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p 95 (345)
+..=..+..++.||+.|.++..+++.+.|+-++++-....+|..++..++ .+.+.|..++.++.+.
T Consensus 261 G~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~-----------~SY~~~v~if~i~sfl 326 (431)
T COG1114 261 GGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPK-----------LSYKTWVIIFTLISFL 326 (431)
T ss_pred hHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------ccHHHHHHHHHHHHHH
Confidence 33445677888999999999999999999999999999999999888774 3345565555554443
No 91
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=68.74 E-value=58 Score=28.77 Aligned_cols=40 Identities=5% Similarity=0.164 Sum_probs=33.2
Q ss_pred chHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhcccccc
Q 019141 218 GLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYC 257 (345)
Q Consensus 218 ~~~~~~~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~ 257 (345)
+.+..-.++...+++..+.|..++-.-..+...+.+++++
T Consensus 76 E~f~~~ikls~~~g~~~a~P~i~yqiw~Fi~PgLy~~Er~ 115 (249)
T CHL00182 76 EYFFSSIKISFYTGLLISSPFIIYQIILFILPGLTKKERK 115 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHH
Confidence 4777888999999999999999998888888887666544
No 92
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=66.38 E-value=94 Score=29.97 Aligned_cols=149 Identities=13% Similarity=0.064 Sum_probs=75.8
Q ss_pred hhhHHHhhhhhhhcceeeeccchh-hcccchhhh----hhHHHHHHHHHHHHHHHhhhhhheec---Cc-cccceecccC
Q 019141 146 VFSYGIGVAVYAFEGVGMILPLES-ETRNKQRFG----RILGWCMAFISLLYGSFGALGYFAFG---EE-TKDIITTNFG 216 (345)
Q Consensus 146 ~~~~~~~~~~faf~~~~~~~~i~~-~m~~p~~~~----~~~~~a~~i~~~~Y~~~g~~gy~~fG---~~-~~~~i~~n~~ 216 (345)
+..-+++-+.|+-..-. .+++ ..+++|+.. ++-.++.....++|...+..|-..-+ +. ..+.++...-
T Consensus 195 ~TMDalaal~Fg~iii~---~i~~~G~~~~~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~ 271 (439)
T PRK15433 195 LTMDTLGAMVFGIVIVN---AARSRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYV 271 (439)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHH
Confidence 34456666777654322 2333 254554443 45556666667788888888764422 21 1223332222
Q ss_pred Cc----hHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhcccccchHHHHHHHHHHHHHHhhcCCccchhhhcchhhHHH
Q 019141 217 AG----LVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCI 292 (345)
Q Consensus 217 ~~----~~~~~~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~r~~~v~~~~~vA~~vp~~~~i~~l~Ga~~~~~ 292 (345)
.. +...+..+...++++++--=....+.+.+++..+ -+++.| -.+..+++..+|. =.+++++++. ...
T Consensus 272 ~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-isY~~~-v~i~~l~S~~lSn--~G~~~II~~s----~Pi 343 (439)
T PRK15433 272 QHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-LSYRTL-VFILGGFSMVVSN--LGLSQLIQIS----VPV 343 (439)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CcHHHH-HHHHHHHHHHHHH--hHHHHHHHHH----HHH
Confidence 11 2223333444555556555566677777777654 233333 2222222222222 2345555553 677
Q ss_pred HHHHHHHHHHHHH
Q 019141 293 LGFVLPALFHLIV 305 (345)
Q Consensus 293 l~filP~l~~~~~ 305 (345)
+.++.|...-+..
T Consensus 344 L~~iYP~~IvLil 356 (439)
T PRK15433 344 LTAIYPPCIALVV 356 (439)
T ss_pred HHHHhHHHHHHHH
Confidence 8888888776654
No 93
>PLN02680 carbon-monoxide oxygenase
Probab=66.34 E-value=88 Score=27.28 Aligned_cols=73 Identities=12% Similarity=0.177 Sum_probs=51.1
Q ss_pred hhhcccchhhhhhHHHHHHHHHHHHHHHhhhhhheecCccccceecccC--CchHHHHHHHHHHHHHHhhcccchhhH
Q 019141 168 ESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFG--AGLVSTLVNVGLCVNLFLTFPLMMNPV 243 (345)
Q Consensus 168 ~~~m~~p~~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~~~i~~n~~--~~~~~~~~~~~~~i~~~~s~pl~~~p~ 243 (345)
++..+.+|+.+|.+....-.......++|+..-..+-++ .++ .|+- .+|+....-+++.++.+..+....+|.
T Consensus 69 yr~~~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~--~~~-~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 69 YKTVPGTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNE--KGI-DNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 345556677888889888888888889998664444443 333 3332 358888887888888887777777775
No 94
>TIGR01912 TatC-Arch Twin arginine targeting (Tat) protein translocase TatC, Archaeal clade. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR00945) represents the bacterial clade of this family. TatC is often found (in bacteria) in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=61.71 E-value=99 Score=27.05 Aligned_cols=42 Identities=10% Similarity=0.187 Sum_probs=34.4
Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhcccccch
Q 019141 217 AGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYCL 258 (345)
Q Consensus 217 ~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~ 258 (345)
.+....-.++....++..+.|..++-.-..+...+.+++++.
T Consensus 62 ~e~f~~~lk~s~~~g~~~~~P~i~yqiw~Fi~PgLy~~Er~~ 103 (237)
T TIGR01912 62 FAALELRIKSAFFIGLLLASPVLAYEAYRFIKPALKPHERRQ 103 (237)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 357778889999999999999999988888888887666543
No 95
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=60.53 E-value=67 Score=28.54 Aligned_cols=90 Identities=18% Similarity=0.253 Sum_probs=57.0
Q ss_pred chHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhcccccchHHHHHHH-----H----------HHH----HHH------
Q 019141 218 GLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYCLWLRWAVV-----L----------GVS----LVA------ 272 (345)
Q Consensus 218 ~~~~~~~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~r~~~v-----~----------~~~----~vA------ 272 (345)
+.+..-.++...+++..+.|..++-.-..+...+.+++++...+.+.. . +.. +..
T Consensus 66 e~f~~~lk~sl~~g~~la~P~ilyqiw~Fi~PgLy~~Err~~~~~~~~s~~LF~~G~~f~y~~vlP~~~~Fl~~f~~~~~ 145 (258)
T PRK10921 66 SPFFTPIKLTFMVSLILSAPVILYQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLAKTAPEGV 145 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhh
Confidence 467778899999999999999999888888888876654432111100 0 000 111
Q ss_pred hhcCCccchhhhc-chhhHHHHHHHHHHHHHHHHhc
Q 019141 273 LLVPNFADFLSLV-GSSVCCILGFVLPALFHLIVFK 307 (345)
Q Consensus 273 ~~vp~~~~i~~l~-Ga~~~~~l~filP~l~~~~~~~ 307 (345)
...+++++.++++ --..+..++|-+|.+...-.+-
T Consensus 146 ~~~~~i~~Y~~fv~~~~l~fGl~FelPli~~~L~~~ 181 (258)
T PRK10921 146 QVSTDIASYLSFVMALFMAFGVSFEVPVAIVLLCWM 181 (258)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1123455555553 3345667888899999887763
No 96
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=56.33 E-value=2.5e+02 Score=29.15 Aligned_cols=157 Identities=10% Similarity=0.106 Sum_probs=79.1
Q ss_pred chhhcccchh-hhhhHHHHHHHHHHHHHHHhh-hhhh--------eecCcccccee---cccCCchHH----HHHHHHHH
Q 019141 167 LESETRNKQR-FGRILGWCMAFISLLYGSFGA-LGYF--------AFGEETKDIIT---TNFGAGLVS----TLVNVGLC 229 (345)
Q Consensus 167 i~~~m~~p~~-~~~~~~~a~~i~~~~Y~~~g~-~gy~--------~fG~~~~~~i~---~n~~~~~~~----~~~~~~~~ 229 (345)
--.++|++|| .|--...|......+|+.-.+ +|-. .||+.+.++.. .++|+.|.. .....+..
T Consensus 432 rSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVva~laWPsPwVi~IGsFlST~GAg 511 (1075)
T KOG2082|consen 432 RSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVVATLAWPSPWVIVIGSFLSTCGAG 511 (1075)
T ss_pred CCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEEEEEecCCCceeeehhHHHHHhHHH
Confidence 3446777655 666677777777778876443 2222 26777877764 556766543 34445667
Q ss_pred HHHHhhcccchhhH-HHHHHhhhc------ccccchHHHHHHHHHHHHHHhhcCCccchhhhcchhhHHHHHHHHHHHH-
Q 019141 230 VNLFLTFPLMMNPV-YEVVERRFC------DYRYCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALF- 301 (345)
Q Consensus 230 i~~~~s~pl~~~p~-~~~l~~~~~------~~~~~~~~r~~~v~~~~~vA~~vp~~~~i~~l~Ga~~~~~l~filP~l~- 301 (345)
++.+++-|=.+-.. ++-+...+. ++.-+.| .+++-++.+-.++.+.+++.+--++. ....++|.+-.+.
T Consensus 512 LQsLtgAPRLLQAIAkD~IiPfL~~F~~~~~ngEPt~-aLlLT~~Ice~gILigslD~iApils--mFFLMCY~fVNLaC 588 (1075)
T KOG2082|consen 512 LQSLTGAPRLLQAIAKDDIIPFLAPFGHGKANGEPTW-ALLLTAIICECGILIGSLDLIAPILS--MFFLMCYLFVNLAC 588 (1075)
T ss_pred HhhhcCcHHHHHHHhhcCccchhhhhccccCCCCccH-HHHHHHHHHHhhheeechhHHHHHHH--HHHHHHHHHHhHHH
Confidence 77777777543322 222222221 1112233 33344444455566666665544431 1233443333222
Q ss_pred --HHHHhc-ccCChhhHhhhhhhhhhhHH
Q 019141 302 --HLIVFK-QELGWNGIVMDAALLVFGVV 327 (345)
Q Consensus 302 --~~~~~~-~~~~~~~~~~~~~~i~~g~~ 327 (345)
.--++. +.||++ |..+|.+-.+|..
T Consensus 589 avqtLLrtPnWRPRf-kyyHW~LSflG~s 616 (1075)
T KOG2082|consen 589 AVQTLLRTPNWRPRF-KYYHWSLSFLGAS 616 (1075)
T ss_pred HHHHHhcCCCCCccc-hhhhhHHHHHHHH
Confidence 222332 334443 4566766666653
No 97
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=56.00 E-value=35 Score=32.78 Aligned_cols=65 Identities=12% Similarity=0.088 Sum_probs=49.7
Q ss_pred hhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHHhhccc
Q 019141 23 FGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSI 99 (345)
Q Consensus 23 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~ 99 (345)
.....++.+|++|+.+..+.+.+.|+.++++-....+|..++..+ .+.+.+..+..++.++++..
T Consensus 267 l~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~------------isY~~~v~i~~l~S~~lSn~ 331 (439)
T PRK15433 267 LHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP------------LSYRTLVFILGGFSMVVSNL 331 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------------CcHHHHHHHHHHHHHHHHHh
Confidence 344577889999999999999999999999999999999887754 12345555555555655544
No 98
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=51.85 E-value=44 Score=28.18 Aligned_cols=62 Identities=16% Similarity=0.113 Sum_probs=47.1
Q ss_pred hhhhcchhhHHHHHHHHHHHHHHHHhccc----------CChhhHhhhhhhhhhhHHHHHHHHHHHHHHhhc
Q 019141 281 FLSLVGSSVCCILGFVLPALFHLIVFKQE----------LGWNGIVMDAALLVFGVVIGISGTWSSLMEIVA 342 (345)
Q Consensus 281 i~~l~Ga~~~~~l~filP~l~~~~~~~~~----------~~~~~~~~~~~~i~~g~~~~v~g~~~si~~ii~ 342 (345)
-.-..|++.+.-+..++|+...+..+++. -++.......+.-.+|++..+++...|...+.+
T Consensus 46 ~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 46 EVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred hheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45567889999999999999999998752 234455667777788888888888877777655
No 99
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=49.62 E-value=88 Score=30.97 Aligned_cols=27 Identities=11% Similarity=-0.009 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhcccCChhhHh
Q 019141 290 CCILGFVLPALFHLIVFKQELGWNGIV 316 (345)
Q Consensus 290 ~~~l~filP~l~~~~~~~~~~~~~~~~ 316 (345)
-..+..++|+++.++.+-.++++++..
T Consensus 126 ~~~~l~~lp~~~~~~~~~~~~~~~~~~ 152 (522)
T PRK09598 126 YIVVLGVLPGYIIYKIPLKNSSKKAPF 152 (522)
T ss_pred HHHHHHHHHHHHHHHhccccccHHHHH
Confidence 445557899999877764444444444
No 100
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=45.44 E-value=26 Score=21.89 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhheecCc
Q 019141 178 GRILGWCMAFISLLYGSFGALGYFAFGEE 206 (345)
Q Consensus 178 ~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~ 206 (345)
..+...++.+..++-.+.|..-|.+||..
T Consensus 5 e~A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 5 SPALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred chhHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 34566677777777777788888888864
No 101
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=45.44 E-value=59 Score=32.36 Aligned_cols=158 Identities=16% Similarity=0.078 Sum_probs=86.8
Q ss_pred HHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHHhhcccCCCCchhh
Q 019141 28 YTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAP 107 (345)
Q Consensus 28 ~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 107 (345)
.+..|+-.+-...++..+.+.-++..|.+..+|...+++..++... .+. +-.+..++.+-.+.. ..+.-+.
T Consensus 102 s~slg~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~~~------i~g--i~~vt~~ill~i~~a-g~~w~~k 172 (643)
T KOG2083|consen 102 SRSLGPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETESKEM------IDG--IGSVTVLILLAINVA-GVEWEAK 172 (643)
T ss_pred EecccccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccHHH------hcc--hhHHHHHHHHHhhhc-cchhHHH
Confidence 3445555555566666777777888899999999999998763321 121 111222222222222 2333333
Q ss_pred HHHHHHHHHHHHhhheeeeec-c-c-cc-----------cc--CCccccccCcchhhHHHhhhhhhhcceeeeccchhhc
Q 019141 108 LSIFADIVDLGAMGLVMVEDV-M-I-SM-----------KQ--RPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESET 171 (345)
Q Consensus 108 ~s~~~~~~~~~~~~~v~~~~~-~-~-~~-----------~~--~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 171 (345)
.-.+-....++++.--++... + + .. ++ ++++. +-.+++..|++++=+..|--.=..+-.++
T Consensus 173 ~q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~---~~~tfF~vf~vfFpaatgilaG~nisGdL 249 (643)
T KOG2083|consen 173 LQIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDID---PGYTFFSVFAVFFPAATGILAGANISGDL 249 (643)
T ss_pred HHHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcC---CCCceEeeeeeecchhhhhhccccccCCC
Confidence 332222222222221111111 0 0 00 00 11211 11267888888888886655556788899
Q ss_pred ccchh-hhhhHHHHHHHHHHHHHHHhh
Q 019141 172 RNKQR-FGRILGWCMAFISLLYGSFGA 197 (345)
Q Consensus 172 ~~p~~-~~~~~~~a~~i~~~~Y~~~g~ 197 (345)
|+|++ .|+....+.......|+.+-.
T Consensus 250 ~~Pq~~IP~GaL~Ai~vst~~yl~~i~ 276 (643)
T KOG2083|consen 250 KDPQKAIPLGALLAIGVSTLLYLIFIA 276 (643)
T ss_pred CCchhhcccchhhhhhhhhhhhhhhhh
Confidence 99854 889999999999999965543
No 102
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=43.67 E-value=2.6e+02 Score=27.01 Aligned_cols=129 Identities=20% Similarity=0.196 Sum_probs=70.4
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHhhhhhheecCccccceecccCCc-hHHHHHHHHHHHHHHhhcccchhhHHHHHHh
Q 019141 171 TRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAG-LVSTLVNVGLCVNLFLTFPLMMNPVYEVVER 249 (345)
Q Consensus 171 m~~p~~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~~~i~~n~~~~-~~~~~~~~~~~i~~~~s~pl~~~p~~~~l~~ 249 (345)
-+|+++.+++...+..+..++..+++..++.. .++++.-++++ -....++-..-+..+...+..++-..+.+.+
T Consensus 86 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr 160 (455)
T COG0534 86 AGDRKKAKRVLGQGLLLALLLGLLLAILLLFF-----AEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILR 160 (455)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888777777766554 23333333321 1223333233333333333334444444444
Q ss_pred hhcccccchHHHHHHHHHHHHHH-hhc-CCccchhhhcchhhHHHHHHHHHHHHHHHH
Q 019141 250 RFCDYRYCLWLRWAVVLGVSLVA-LLV-PNFADFLSLVGSSVCCILGFVLPALFHLIV 305 (345)
Q Consensus 250 ~~~~~~~~~~~r~~~v~~~~~vA-~~v-p~~~~i~~l~Ga~~~~~l~filP~l~~~~~ 305 (345)
-..+.|.+.....+....-.++- +++ -.++. +++.||-.++.++..+.+++.+..
T Consensus 161 ~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~-lGv~GAA~AT~ia~~~~~~~~~~~ 217 (455)
T COG0534 161 GLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGG-LGVAGAALATVIARWIGALLLLIY 217 (455)
T ss_pred hcCCCchhHHHHHHHHHHHHHhhHHHHHhcccc-ccchhHHHHHHHHHHHHHHHHHHH
Confidence 44555555443333333222221 111 11444 999999999999999988875543
No 103
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=42.84 E-value=2e+02 Score=25.45 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=26.2
Q ss_pred chhhhhhHHHHHHHHHHHHHHHhhhhhheecCccccceecccCC
Q 019141 174 KQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGA 217 (345)
Q Consensus 174 p~~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~~~i~~n~~~ 217 (345)
.+++++.+.+..++..+++...-..+.-.++|.. +.++...|+
T Consensus 23 ~P~lr~~~liPl~inllLf~~~l~~~~~~~~~~l-~~l~~~~p~ 65 (251)
T PRK04949 23 QPGLRRFVILPLLVNILLFGGAFWWLFTQLDAWI-DWLMSQLPD 65 (251)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCcc
Confidence 3457888888888888877776544444444433 444444443
No 104
>cd03495 SQR_TypeC_SdhD_like Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase D (SdhD) subunit-like; composed of predominantly uncharacterized bacterial proteins with similarity to the E. coli SdhD subunit. One characterized protein is the respiratory Complex II SdhD subunit of the only eukaryotic member, Reclinomonas americana. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. It is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. E. coli SQR is classified as Type C SQRs because it contains two transmembrane subunits and one heme group. The SdhD and SdhC subunits are membrane anchor subunits containing heme and quinone binding sites. The two-electron oxidation of succinate in the flavoprotein active site is
Probab=42.45 E-value=1.1e+02 Score=22.68 Aligned_cols=47 Identities=21% Similarity=-0.007 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhcccchhhHHHHHHhhhcccccchHHHHHHHHHHHH
Q 019141 224 VNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYCLWLRWAVVLGVSL 270 (345)
Q Consensus 224 ~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~r~~~v~~~~~ 270 (345)
.++...+.++..+--.-...|..+|++++++..|.........++..
T Consensus 44 ~~i~~~l~l~~~~~H~~~Gm~~IieDYV~~~~~R~~l~~~~~~~~~~ 90 (100)
T cd03495 44 NAILLILTLVSAFYHARLGMQVVIEDYVHSEGLRLALIIAVKLFAIA 90 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 34444444445555556689999999999888776655544444443
No 105
>PRK15015 carbon starvation protein A; Provisional
Probab=39.75 E-value=1.8e+02 Score=29.55 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=35.6
Q ss_pred CcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhH
Q 019141 19 KINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTL 62 (345)
Q Consensus 19 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l 62 (345)
+-+|.+|++++-.|++++.+..+...+...-...++...+.+.+
T Consensus 143 ~GrSig~ia~~~iG~~~~~lfli~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 143 DGRSLGELVKEEMGPTAGVIALVACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred CCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999988888777776666666666554
No 106
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=39.73 E-value=35 Score=21.09 Aligned_cols=27 Identities=26% Similarity=0.205 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhhheecCc
Q 019141 180 ILGWCMAFISLLYGSFGALGYFAFGEE 206 (345)
Q Consensus 180 ~~~~a~~i~~~~Y~~~g~~gy~~fG~~ 206 (345)
+...++.+..++-.+.|..-|.+||..
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCC
Confidence 345566677777778888889999854
No 107
>CHL00020 psbN photosystem II protein N
Probab=39.14 E-value=28 Score=21.41 Aligned_cols=27 Identities=26% Similarity=0.188 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhhheecCc
Q 019141 180 ILGWCMAFISLLYGSFGALGYFAFGEE 206 (345)
Q Consensus 180 ~~~~a~~i~~~~Y~~~g~~gy~~fG~~ 206 (345)
+...++.+..++-.+.|..-|.+||..
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 455666777777777777788888864
No 108
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=37.44 E-value=25 Score=30.49 Aligned_cols=71 Identities=14% Similarity=0.216 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhcCCccchhhhc---------chhhHHHHHHHHHHHHHHHHhcc--c-CCh--hhHhhhhhhhhhhHHHH
Q 019141 264 VVLGVSLVALLVPNFADFLSLV---------GSSVCCILGFVLPALFHLIVFKQ--E-LGW--NGIVMDAALLVFGVVIG 329 (345)
Q Consensus 264 ~v~~~~~vA~~vp~~~~i~~l~---------Ga~~~~~l~filP~l~~~~~~~~--~-~~~--~~~~~~~~~i~~g~~~~ 329 (345)
..+.+.++|..++-++.++.++ ||.+|.-++++= |..+.+. + .+. .+++..|+++++|++..
T Consensus 162 ~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll~ 237 (262)
T KOG4812|consen 162 IFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLLLF 237 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHHHH
Confidence 3344455555555555554443 777777777654 3222221 1 111 24678889999999999
Q ss_pred HHHHHHHHH
Q 019141 330 ISGTWSSLM 338 (345)
Q Consensus 330 v~g~~~si~ 338 (345)
.-|+++=++
T Consensus 238 lr~~i~Yik 246 (262)
T KOG4812|consen 238 LRGFINYIK 246 (262)
T ss_pred HHHHHhHHH
Confidence 988876543
No 109
>PF00902 TatC: Sec-independent protein translocase protein (TatC); InterPro: IPR002033 Proteins encoded by the mttABC operon (formerly yigTUW), mediate a novel Sec-independent membrane targeting and translocation system in Escherichia coli that interacts with cofactor-containing redox proteins having a S/TRRXFLK "twin arginine" leader motif. This family contains the E. coli mttB gene (TATC) []. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N and C termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N terminus and the first cytoplasmic loop region of the E. coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon [, ].
Probab=34.57 E-value=2.9e+02 Score=23.55 Aligned_cols=91 Identities=14% Similarity=0.260 Sum_probs=58.0
Q ss_pred CchHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhcccccchHHHH-----HHHHHHHHHH-------------------
Q 019141 217 AGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYCLWLRW-----AVVLGVSLVA------------------- 272 (345)
Q Consensus 217 ~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~r~-----~~v~~~~~vA------------------- 272 (345)
.+....-.++...+++..+.|...+-.-..+...+.+++++..... .+.......+
T Consensus 58 ~e~f~~~lk~s~~~~~~~~~P~~~yq~w~Fi~PgL~~~Er~~~~~~~~~~~~lf~~g~~f~y~~ilP~~~~fl~~f~~~~ 137 (215)
T PF00902_consen 58 TEAFFTYLKLSFFLGLIISLPYILYQIWAFIAPGLYKHERRFFKKFVLISFILFLLGVAFAYFVILPLILKFLLSFSPTS 137 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3577888999999999999999999888888888876665532111 1111111111
Q ss_pred --hhcCCccchhhhcc-hhhHHHHHHHHHHHHHHHHhc
Q 019141 273 --LLVPNFADFLSLVG-SSVCCILGFVLPALFHLIVFK 307 (345)
Q Consensus 273 --~~vp~~~~i~~l~G-a~~~~~l~filP~l~~~~~~~ 307 (345)
...+++++.++++- -.....+.|-+|.++..-.+.
T Consensus 138 ~~~~~~~i~~y~~f~~~~~~~~gl~FqlPli~~~L~~~ 175 (215)
T PF00902_consen 138 GIQPEPSISSYLNFVIQFLLIFGLIFQLPLIMFFLVRL 175 (215)
T ss_pred chhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 22234455555543 244566778899999877764
No 110
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=33.68 E-value=2.5e+02 Score=24.91 Aligned_cols=57 Identities=11% Similarity=0.038 Sum_probs=34.7
Q ss_pred chHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhcccccchHHHHHHHHHHHHHHhhcC
Q 019141 218 GLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYCLWLRWAVVLGVSLVALLVP 276 (345)
Q Consensus 218 ~~~~~~~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~r~~~v~~~~~vA~~vp 276 (345)
++...+.+....+.+.+-.|+.+.-+.+ -+.++.+..+...|...+....+.|+.-|
T Consensus 153 ~Y~~fv~~~~l~fGl~FelPli~~~L~~--~giv~~~~l~~~Rr~~~v~~~iiaAiiTP 209 (258)
T PRK10921 153 SYLSFVMALFMAFGVSFEVPVAIVLLCW--MGVTTPEDLRKKRPYVLVGAFVVGMLLTP 209 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCHHHHHhcCcHHhHHHHHHHHHcCC
Confidence 4667788888888888888887543321 22233333333445566665666667777
No 111
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=30.97 E-value=1e+02 Score=24.88 Aligned_cols=56 Identities=13% Similarity=0.083 Sum_probs=37.3
Q ss_pred hcchhhHHHHHHHHHHHHHHH---Hhcc-cCChhhHhhhhhhhhhhHHHHHHHHHHHHHHhhc
Q 019141 284 LVGSSVCCILGFVLPALFHLI---VFKQ-ELGWNGIVMDAALLVFGVVIGISGTWSSLMEIVA 342 (345)
Q Consensus 284 l~Ga~~~~~l~filP~l~~~~---~~~~-~~~~~~~~~~~~~i~~g~~~~v~g~~~si~~ii~ 342 (345)
..|+-.+...+|..|-+++.. ..++ +.++ -.-.+.+++|+..++.++..+-+...+
T Consensus 34 ~~~g~~~~~~gF~~Pt~y~~yk~~~~~gv~~~~---~~pflSf~lG~~~m~~~~~~~~k~~y~ 93 (152)
T PF07954_consen 34 NLGGYGGFMAGFFAPTAYYRYKTGAIKGVPVPR---QKPFLSFLLGLGAMMAGSQLAGKYQYN 93 (152)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhcccccCCcCCc---cCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 447778888999999888754 1111 1111 334567889999999998877665543
No 112
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=29.43 E-value=3.7e+02 Score=25.93 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=13.4
Q ss_pred hhhcchhhHHHHHHHHHHHHHHH
Q 019141 282 LSLVGSSVCCILGFVLPALFHLI 304 (345)
Q Consensus 282 ~~l~Ga~~~~~l~filP~l~~~~ 304 (345)
+++.|.-.+..+.-++=+++...
T Consensus 417 ~g~~Gvw~~~~i~~~~~~~~~~~ 439 (464)
T PRK00187 417 WGAVGVWWGLALGLACAAVALTL 439 (464)
T ss_pred CCceeeHHHHHHHHHHHHHHHHH
Confidence 46667666666666655554433
No 113
>PRK12768 CysZ-like protein; Reviewed
Probab=29.32 E-value=3e+02 Score=24.11 Aligned_cols=26 Identities=8% Similarity=-0.015 Sum_probs=17.5
Q ss_pred hcccchhhhhhHHHHHHHHHHHHHHHh
Q 019141 170 ETRNKQRFGRILGWCMAFISLLYGSFG 196 (345)
Q Consensus 170 ~m~~p~~~~~~~~~a~~i~~~~Y~~~g 196 (345)
++.+| ++++++..+.+.+..+....+
T Consensus 11 ql~~~-~~r~vl~~~~~lt~~l~~~~~ 36 (240)
T PRK12768 11 RLLSP-PMRSVFWKVLGLTLLLLVVLW 36 (240)
T ss_pred HhCCH-HHHHHHHHHHHHHHHHHHHHH
Confidence 34444 477888888877777776654
No 114
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=28.85 E-value=3e+02 Score=27.49 Aligned_cols=15 Identities=40% Similarity=0.339 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhc
Q 019141 293 LGFVLPALFHLIVFK 307 (345)
Q Consensus 293 l~filP~l~~~~~~~ 307 (345)
+.-++|+++.++.+-
T Consensus 129 ~~gvlP~~~~~~~~i 143 (545)
T PRK11598 129 LSGVLPALIACWIKI 143 (545)
T ss_pred HHHHHHHHHHHhhhh
Confidence 334799988877653
No 115
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=28.79 E-value=2.6e+02 Score=24.05 Aligned_cols=69 Identities=10% Similarity=0.139 Sum_probs=45.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhhheecCccccceecccC-CchHHHHHHHHHHHHHHhhcccchhhH
Q 019141 175 QRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFG-AGLVSTLVNVGLCVNLFLTFPLMMNPV 243 (345)
Q Consensus 175 ~~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~~~i~~n~~-~~~~~~~~~~~~~i~~~~s~pl~~~p~ 243 (345)
|+..|.+....-.......++|+..-..+-++.++++-+-++ .+|+....-+++.++.+..+....+|.
T Consensus 54 k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~ 123 (214)
T cd08764 54 KKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWLGLTAVILFSLQWVGGFVSFLFPG 123 (214)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445577888888888888888876544454544434432232 357887777888888888776666664
No 116
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=28.68 E-value=2.3e+02 Score=22.71 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=46.9
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHhhhhhheecCccccceecccC--CchHHHHHHHHHHHHHHhhcccchhhH
Q 019141 171 TRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFG--AGLVSTLVNVGLCVNLFLTFPLMMNPV 243 (345)
Q Consensus 171 m~~p~~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~~~i~~n~~--~~~~~~~~~~~~~i~~~~s~pl~~~p~ 243 (345)
.+.+||.+|.+....-.......++|+..-..+-|+. +. .|+- .+|+....-+++.++.+..+....+|.
T Consensus 33 ~~~~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~--~~-~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (144)
T cd08766 33 VPGSREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEV--GI-PNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPG 104 (144)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--Cc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4556777788888888888888888885544443332 22 2232 257777777788887777766666675
No 117
>PLN02810 carbon-monoxide oxygenase
Probab=28.04 E-value=2.7e+02 Score=24.27 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=50.6
Q ss_pred hhcccchhhhhhHHHHHHHHHHHHHHHhhhhhheecCccccceeccc-C-CchHHHHHHHHHHHHHHhhcccchhhHH
Q 019141 169 SETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNF-G-AGLVSTLVNVGLCVNLFLTFPLMMNPVY 244 (345)
Q Consensus 169 ~~m~~p~~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~~~i~~n~-~-~~~~~~~~~~~~~i~~~~s~pl~~~p~~ 244 (345)
+..+.+|+.+|.+....-...++..++|+..-..|-++. .+ .|+ + .+|+....-.++.++-+..+-...+|..
T Consensus 70 r~~~~~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~--~i-~nlySLHSWlGl~tv~Lf~lQw~~Gf~~Fl~P~~ 144 (231)
T PLN02810 70 KSLPLKKEVKKLIHLVLHAIALILGIFGICAAFKNHNES--GI-ANLYSLHSWLGIGIISLYGIQWIYGFIVFFFPGG 144 (231)
T ss_pred hccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CC-CceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 444556777888999888888888889987666655543 33 332 2 2577777777888888777766666653
No 118
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=27.99 E-value=5.1e+02 Score=25.00 Aligned_cols=126 Identities=18% Similarity=0.157 Sum_probs=57.0
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHhhhhhheecCccccceecccCCchHHHHHHHHHHHHHHhhcccchhhHHHHHHhhh-
Q 019141 173 NKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRF- 251 (345)
Q Consensus 173 ~p~~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~~~i~~n~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~l~~~~- 251 (345)
|++|.++....+...+..+-..++..-|.. ++..-+-..++ ++......+ ..-+..+. +|. ..........+
T Consensus 312 ~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f-~~~i~~lF~~~--~~v~~~~~~-~l~i~~~~-~~~--~~~~~v~~g~lr 384 (455)
T COG0534 312 NYKRARRAARLALKLSLLIALLIALLLLLF-REPIISLFTTD--PEVIALAVI-LLLIAALF-QPF--DGIQFVLSGVLR 384 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCC--HHHHHHHHH-HHHHHHHH-HHH--HHHHHHHHHHHH
Confidence 356777777777777776666665544432 22222211111 111111111 11111111 111 12222333333
Q ss_pred --cccccchHHHHH-HHHHHHHHHhhcCCccchhhhcchhhHHHHHHHHHHHHHHHHhc
Q 019141 252 --CDYRYCLWLRWA-VVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFK 307 (345)
Q Consensus 252 --~~~~~~~~~r~~-~v~~~~~vA~~vp~~~~i~~l~Ga~~~~~l~filP~l~~~~~~~ 307 (345)
++.+........ .+.+-..++...+... ++..|--.+....-++-++......+
T Consensus 385 g~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~--~g~~Gvw~~~~~~~~~~~~~~~~~~~ 441 (455)
T COG0534 385 GAGDAKIPFIISLLSYWGFRLPLAYLLGFFF--LGLAGVWIGFPLSLILRAILLLLRLR 441 (455)
T ss_pred hcCCcHHHHHHHHHHHHHHHHhHHHHHhhhc--ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443332 2223344444555443 77777777777777777776555443
No 119
>PLN02351 cytochromes b561 family protein
Probab=27.89 E-value=2.2e+02 Score=25.03 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=49.3
Q ss_pred hhhcccchhhhhhHHHHHHHHHHHHHHHhhhhhheecCccccceecccC--CchHHHHHHHHHHHHHHhhcccchhhHH
Q 019141 168 ESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFG--AGLVSTLVNVGLCVNLFLTFPLMMNPVY 244 (345)
Q Consensus 168 ~~~m~~p~~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~~~i~~n~~--~~~~~~~~~~~~~i~~~~s~pl~~~p~~ 244 (345)
++..+.++|.+|.+....-...++..++|+.. .|-++ ++...|+- .+|+....-.++.++-+..+....+|..
T Consensus 73 YR~~~~~~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh~~--~~~i~nlySLHSWlGl~tv~Lf~lQwv~Gf~~F~~P~~ 147 (242)
T PLN02351 73 HRWLPGSRKTKKSVHLWLQGLALASGVFGIWT--KFHGQ--DGIVANFYSLHSWMGLICVSLFGAQWLTGFMSFWHRGE 147 (242)
T ss_pred hhcccccchHHHHHHHHHHHHHHHHHHHHHHH--HHhcc--cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44556666678888888888888888888877 44433 22333332 3588777777888888777776666654
No 120
>PRK01766 multidrug efflux protein; Reviewed
Probab=27.61 E-value=3.8e+02 Score=25.55 Aligned_cols=25 Identities=20% Similarity=0.370 Sum_probs=18.4
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHHh
Q 019141 282 LSLVGSSVCCILGFVLPALFHLIVF 306 (345)
Q Consensus 282 ~~l~Ga~~~~~l~filP~l~~~~~~ 306 (345)
+++.|...+...+..+.+++.++..
T Consensus 415 ~G~~G~~~~~~~~~~~~~~~~~~~~ 439 (456)
T PRK01766 415 MGPFGFWIGLIIGLTAAAILLLLRL 439 (456)
T ss_pred CCceehHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888877765544
No 121
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=27.06 E-value=3.3e+02 Score=21.83 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcccCCh
Q 019141 288 SVCCILGFVLPALFHLIVFKQELGW 312 (345)
Q Consensus 288 ~~~~~l~filP~l~~~~~~~~~~~~ 312 (345)
..-..+.-++|+++.++.+-+++++
T Consensus 69 ~~~~l~~~vlP~~~l~~~~i~~~~~ 93 (156)
T PF08019_consen 69 ILWLLLLGVLPALLLWRVRIKKRSW 93 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccH
Confidence 3445566678999887776544443
No 122
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=25.86 E-value=4.9e+02 Score=23.36 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=13.1
Q ss_pred hhhcchhhHHHHHHHHHHHHH
Q 019141 282 LSLVGSSVCCILGFVLPALFH 302 (345)
Q Consensus 282 ~~l~Ga~~~~~l~filP~l~~ 302 (345)
.+..|+..+..++..+-.++.
T Consensus 170 ~g~~g~~~~~~~~~~~~~~~~ 190 (342)
T TIGR00797 170 LGIVGAALATVISYWLMFLLL 190 (342)
T ss_pred cccHHHHHHHHHHHHHHHHHH
Confidence 456677766666666655554
No 123
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=25.31 E-value=1.4e+02 Score=21.59 Aligned_cols=54 Identities=13% Similarity=0.096 Sum_probs=30.0
Q ss_pred HHhhhhhhhcceeeeccchhhcccchh--hhhhHHHHHHHHHHHHHHHhhhhhheecC
Q 019141 150 GIGVAVYAFEGVGMILPLESETRNKQR--FGRILGWCMAFISLLYGSFGALGYFAFGE 205 (345)
Q Consensus 150 ~~~~~~faf~~~~~~~~i~~~m~~p~~--~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~ 205 (345)
..|++..+-.|...+.+..++-.+|.+ ++-...++++ ..+-+++|++.|..||.
T Consensus 16 i~GIiLL~~ACIFAfidFSK~~s~~~~~~wRalSii~FI--lG~vl~lGilifs~y~~ 71 (91)
T PHA02680 16 ICGVLLLTAACVFAFVDFSKNTSNVTDYVWRALSVTCFI--VGAVLLLGLFVFSMYRK 71 (91)
T ss_pred HHHHHHHHHHHHHhhhhhhccCCCCcchhHHHHHHHHHH--HHHHHHHHHHHHHHhcc
Confidence 345555555555555567666655533 3333333333 33456778888888883
No 124
>COG2142 SdhD Succinate dehydrogenase, hydrophobic anchor subunit [Energy production and conversion]
Probab=24.26 E-value=3.3e+02 Score=20.92 Aligned_cols=42 Identities=21% Similarity=0.121 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhcccchhhHHHHHHhhhcccccchHHHHHHHH
Q 019141 225 NVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYCLWLRWAVVL 266 (345)
Q Consensus 225 ~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~r~~~v~ 266 (345)
++...+.+....--....+|+.+|++.++++.|.++......
T Consensus 59 ~v~~lL~l~~~l~H~~~Glr~Ii~DYi~~~~~r~~l~~~~~~ 100 (117)
T COG2142 59 KVFLLLLLVAALIHAWNGLRVIIEDYIKPEKLRLALQILLVL 100 (117)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333444444444444668999999999999988775554443
No 125
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=24.06 E-value=7.3e+02 Score=24.79 Aligned_cols=44 Identities=16% Similarity=0.146 Sum_probs=33.3
Q ss_pred CcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhH
Q 019141 19 KINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTL 62 (345)
Q Consensus 19 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l 62 (345)
+-+|.+|+++...|+..|.+..+...+...-...++.......+
T Consensus 112 ~G~Si~~ia~~~lG~~a~~~~~~~~l~iliiv~Avfa~vv~~~l 155 (575)
T COG1966 112 GGKSIGEIAGKYLGRTAKVFFLLLALILLILVGAVFAAVIAKLL 155 (575)
T ss_pred CCccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999888877766665555555444443
No 126
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=23.98 E-value=3.1e+02 Score=22.24 Aligned_cols=67 Identities=13% Similarity=0.229 Sum_probs=47.6
Q ss_pred chhhhhhHHHHHHHHHHHHHHHhhhhhheecCccccceecccC--CchHHHHHHHHHHHHHHhhcccchhhH
Q 019141 174 KQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFG--AGLVSTLVNVGLCVNLFLTFPLMMNPV 243 (345)
Q Consensus 174 p~~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~~~i~~n~~--~~~~~~~~~~~~~i~~~~s~pl~~~p~ 243 (345)
+|+.+|.+....-.....-.++|+..-..+-++. +. .|+- .+|+..+.-+++.++-+..+....+|.
T Consensus 43 ~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~--~~-~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 43 SKLLMKLIHAGLHILAFILAIISVVAVFVFHNAK--NI-PNMYSLHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CC-CccccHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4667788888888888888888886655554432 22 2332 257888888888888888888888886
No 127
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=23.95 E-value=4.3e+02 Score=22.03 Aligned_cols=94 Identities=19% Similarity=0.335 Sum_probs=49.5
Q ss_pred ccchhhHHHHHHhhhcccccchHHHHHHHHHHHHHHhhcCCccchhhhcchhhHHHHHHHHHHHHHHHHhc--ccCChhh
Q 019141 237 PLMMNPVYEVVERRFCDYRYCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFK--QELGWNG 314 (345)
Q Consensus 237 pl~~~p~~~~l~~~~~~~~~~~~~r~~~v~~~~~vA~~vp~~~~i~~l~Ga~~~~~l~filP~l~~~~~~~--~~~~~~~ 314 (345)
-++.+|..+.+|+..+..|............-.+.+ ++.++ |-...+...+.+|+-+.++..+ ++....+
T Consensus 18 t~~~~piL~~ie~~~~~~k~Y~~~~asf~~l~~lfs-------~vlG~-g~ilt~~~~~~lP~~~~l~a~~~~n~~dd~q 89 (186)
T COG5052 18 TLQAFPILREIENLYNRYKKYFMAGASFLYLLNLFS-------TVLGF-GLILTNVAGFSLPAQLSLVAFYTLNFMDDTQ 89 (186)
T ss_pred HHHhhHHHHHHHHHhCcchhhHHHHHHHHHHHHHHH-------HhhhH-HHHHHHHHHHHccHHHHHHHHHcCCchhhHH
Confidence 346788889999998865544332222211111111 11111 1156777889999888777765 2222222
Q ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHh
Q 019141 315 IVMDAALLVFGVVIGISGTWSSLMEI 340 (345)
Q Consensus 315 ~~~~~~~i~~g~~~~v~g~~~si~~i 340 (345)
... .=++.|++..+-...+.+...
T Consensus 90 ~l~--ywmV~~~lsaie~~s~~il~~ 113 (186)
T COG5052 90 LLT--YWMVFGFLSAIEKYSGAILSK 113 (186)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 222 234556666665555555544
No 128
>PHA03048 IMV membrane protein; Provisional
Probab=22.60 E-value=1.5e+02 Score=21.42 Aligned_cols=62 Identities=15% Similarity=0.109 Sum_probs=34.3
Q ss_pred hhHHHhhhhhhhcceeeeccchhhcccchhhhhhHHHHHHHHHHHHHHHhhhhhheecCccccc
Q 019141 147 FSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDI 210 (345)
Q Consensus 147 ~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~~~ 210 (345)
-....|++..+-.|...+.+..++ +++.+-.|++.+-. +...+-+++|.+-|.+||....++
T Consensus 13 ~vli~GIiLL~~aCIfAfidfsK~-k~~~~~wRalsii~-FIlgivl~lG~~ifsmy~r~C~~~ 74 (93)
T PHA03048 13 TALIGGIILLAASCIFAFVDFSKN-KATVTVWRALSGIA-FVLGIVMTIGMLIYSMWGRYCTPS 74 (93)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhcC-CCcchhHHHHHHHH-HHHHHHHHHHHHHHHHHhcccCCC
Confidence 344556666666665555677777 33333333333222 223345678888899998655443
No 129
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=22.56 E-value=1.5e+02 Score=24.74 Aligned_cols=68 Identities=10% Similarity=0.142 Sum_probs=47.4
Q ss_pred chhhhhhHHHHHHHHHHHHHHHhhhhhheecCccccceecccC-CchHHHHHHHHHHHHHHhhcccchhhH
Q 019141 174 KQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFG-AGLVSTLVNVGLCVNLFLTFPLMMNPV 243 (345)
Q Consensus 174 p~~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~~~i~~n~~-~~~~~~~~~~~~~i~~~~s~pl~~~p~ 243 (345)
+|+.+|.+....-...++..++|+..-..+-++. .+-+.++ .+|+....-.++.++-+..+....+|.
T Consensus 66 ~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~--~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p~ 134 (179)
T cd08762 66 PKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVH--HTANLYSLHSWVGICTVALFTCQWVMGFTSFLLPW 134 (179)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5667788888888888888888986655555443 3322232 357777777788888887777766664
No 130
>PF00902 TatC: Sec-independent protein translocase protein (TatC); InterPro: IPR002033 Proteins encoded by the mttABC operon (formerly yigTUW), mediate a novel Sec-independent membrane targeting and translocation system in Escherichia coli that interacts with cofactor-containing redox proteins having a S/TRRXFLK "twin arginine" leader motif. This family contains the E. coli mttB gene (TATC) []. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N and C termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N terminus and the first cytoplasmic loop region of the E. coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon [, ].
Probab=22.56 E-value=2.7e+02 Score=23.74 Aligned_cols=57 Identities=16% Similarity=0.178 Sum_probs=37.1
Q ss_pred chHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhcccccchHHHHHHHHHHHHHHhhcC
Q 019141 218 GLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYCLWLRWAVVLGVSLVALLVP 276 (345)
Q Consensus 218 ~~~~~~~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~r~~~v~~~~~vA~~vp 276 (345)
++...+.+......+.+-.|+...-..+ .+.++.+..++..|...+....+.|...|
T Consensus 147 ~y~~f~~~~~~~~gl~FqlPli~~~L~~--~giv~~~~l~~~rr~~~~~~~iiaa~itP 203 (215)
T PF00902_consen 147 SYLNFVIQFLLIFGLIFQLPLIMFFLVR--LGIVSPKFLRKYRRYAYFGIFIIAAFITP 203 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcCHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4677888888888888888887654432 23333343444446677777777777776
No 131
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=22.10 E-value=71 Score=22.93 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=24.0
Q ss_pred chhhcccchhhhhhHHHHHHHHHHHHHHHhhhhhheec
Q 019141 167 LESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFG 204 (345)
Q Consensus 167 i~~~m~~p~~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG 204 (345)
+.+++++.++-+|.+.+|.+.+.+.-++.+..||..|.
T Consensus 42 ~d~~i~kK~k~kK~iiiS~i~s~lalli~~~~G~g~y~ 79 (84)
T PF09716_consen 42 IDDKIEKKKKNKKKIIISTIASGLALLIATALGYGYYK 79 (84)
T ss_pred hhHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555566677777766666655666677776654
No 132
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=20.45 E-value=2.3e+02 Score=18.41 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=22.2
Q ss_pred chhhhhhHHHHHHHHHHHHHHHhhhhhheecCccc
Q 019141 174 KQRFGRILGWCMAFISLLYGSFGALGYFAFGEETK 208 (345)
Q Consensus 174 p~~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~ 208 (345)
|+.|.-++ +=.++.+++|++.|+.=+..+.++++
T Consensus 19 ~NsF~fVi-ik~vismimylilGi~L~yis~~~~~ 52 (54)
T PF04835_consen 19 PNSFWFVI-IKSVISMIMYLILGIALIYISSNDDK 52 (54)
T ss_pred CchHHHHH-HHHHHHHHHHHHHHHHHhhhccCccc
Confidence 44455443 44568899999999876665555443
No 133
>PRK11560 phosphoethanolamine transferase; Provisional
Probab=20.40 E-value=8e+02 Score=24.59 Aligned_cols=21 Identities=10% Similarity=-0.058 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHHhcc
Q 019141 288 SVCCILGFVLPALFHLIVFKQ 308 (345)
Q Consensus 288 ~~~~~l~filP~l~~~~~~~~ 308 (345)
..-..+.-++|+++.++.+-+
T Consensus 124 ~~~~l~~gvlP~~~i~~~~i~ 144 (558)
T PRK11560 124 ILWLVAVSALPLILIWNNRCR 144 (558)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 344445569999998888653
No 134
>PRK11403 hypothetical protein; Provisional
Probab=20.19 E-value=3.7e+02 Score=20.44 Aligned_cols=56 Identities=13% Similarity=-0.041 Sum_probs=41.2
Q ss_pred hhhhcchhhHHHHHHHHHHHHHHHHhcccC-ChhhHhhhhhhhhhhHHHHHHHHHHH
Q 019141 281 FLSLVGSSVCCILGFVLPALFHLIVFKQEL-GWNGIVMDAALLVFGVVIGISGTWSS 336 (345)
Q Consensus 281 i~~l~Ga~~~~~l~filP~l~~~~~~~~~~-~~~~~~~~~~~i~~g~~~~v~g~~~s 336 (345)
.++=-|-.++..+.-.+|++-+.|..+++. ...-...+|...++++....+|.+++
T Consensus 29 ~LneKGYyf~vL~~GlF~~vs~qk~vrd~~~~~~y~~~cw~~~llsi~LL~vGl~NA 85 (113)
T PRK11403 29 LLSGKGYFLGVLMTATFGNYAYLRAEKLGQLDDFFIHICQLVALITIGLLFIGVLNA 85 (113)
T ss_pred ccCccchhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334457788888899999999999877543 22223468888888888888888875
Done!