Query 019141
Match_columns 345
No_of_seqs 123 out of 1172
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 11:32:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019141.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019141hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.3 6E-10 2.1E-14 105.7 22.0 292 7-310 59-380 (445)
2 3gia_A Uncharacterized protein 99.1 9.5E-09 3.3E-13 97.4 18.9 288 7-309 58-369 (444)
3 4djk_A Probable glutamate/gamm 99.0 3.3E-08 1.1E-12 95.4 21.3 290 7-307 60-394 (511)
4 2jln_A MHP1; hydantoin, transp 97.9 8.3E-05 2.8E-09 71.4 12.1 266 20-294 87-375 (501)
5 3dh4_A Sodium/glucose cotransp 96.6 0.15 5.2E-06 48.9 18.6 89 18-118 80-169 (530)
6 2xq2_A Sodium/glucose cotransp 95.0 0.87 3E-05 44.3 16.5 89 18-118 109-198 (593)
7 2a65_A Leutaa, Na(+):neurotran 89.9 14 0.00046 35.2 17.6 112 95-206 180-309 (519)
8 4b4a_A TATC, SEC-independent p 75.6 12 0.00042 31.7 8.4 43 216-258 57-99 (249)
9 4b4a_A TATC, SEC-independent p 57.9 26 0.0009 29.6 6.9 57 218-276 148-204 (249)
10 3tx3_A Uncharacterized protein 28.6 1.8E+02 0.006 24.5 7.3 35 170-205 23-57 (249)
11 2ks1_B Epidermal growth factor 20.4 1.1E+02 0.0036 18.2 3.1 28 280-308 13-40 (44)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.27 E-value=6e-10 Score=105.66 Aligned_cols=292 Identities=9% Similarity=-0.013 Sum_probs=162.6
Q ss_pred chhhhhhhcCCCCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHH
Q 019141 7 TRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYI 86 (345)
Q Consensus 7 c~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (345)
|+.++..+ .++....-+..++.+||+..++..+...+.......++....++.+...++...++ .....+.
T Consensus 59 ~~~el~~~--~p~~Gg~y~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 129 (445)
T 3l1l_A 59 VYAKMSFL--DPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDP-------WVLTITC 129 (445)
T ss_dssp HHHHHHHH--CCCTTTHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSH-------HHHHHHH
T ss_pred HHHHHHcc--CCCCCCchhhHHhHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccccc-------HHHHHHH
Confidence 45555555 34556777888999999999999999888888777788888887776554432111 1112222
Q ss_pred HHHHHHHHhhcccCCCCchhhHHHHHHHHHHHHhhheeeeeccccccc--CCcccc--ccCcchhhHHHhhhhhhhccee
Q 019141 87 WGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQ--RPALKA--FGDFSVFSYGIGVAVYAFEGVG 162 (345)
Q Consensus 87 ~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~faf~~~~ 162 (345)
++.. ...-....+..|..+.+..+.....+..++.+++.......++ .++... ..++.++..++....|+|.|..
T Consensus 130 ~~~~-~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e 208 (445)
T 3l1l_A 130 VVVL-WIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVE 208 (445)
T ss_dssp HHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTT
T ss_pred HHHH-HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHH
Confidence 2111 1222233445566666655444433332222221111111110 011111 1135578889999999999999
Q ss_pred eeccchhhcccc-hhhhhhHHHHHHHHHHHHHHHhhhhhheecCccc----ccee---cccCCchHHHHHHHHHHHHHHh
Q 019141 163 MILPLESETRNK-QRFGRILGWCMAFISLLYGSFGALGYFAFGEETK----DIIT---TNFGAGLVSTLVNVGLCVNLFL 234 (345)
Q Consensus 163 ~~~~i~~~m~~p-~~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~----~~i~---~n~~~~~~~~~~~~~~~i~~~~ 234 (345)
......+|+||| |+.+|+...+..+..++|...........+.+.. ++.. .+...++...+..+...+..+.
T Consensus 209 ~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~ 288 (445)
T 3l1l_A 209 SASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLG 288 (445)
T ss_dssp HHHHGGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 999999999998 5689999999999999999988776666554321 1111 1111223445555555666555
Q ss_pred hcccchhhHHHHHHhhhccc----------ccchHHHHHHH--HHHHHHHhh--cC----CccchhhhcchhhHHHHHHH
Q 019141 235 TFPLMMNPVYEVVERRFCDY----------RYCLWLRWAVV--LGVSLVALL--VP----NFADFLSLVGSSVCCILGFV 296 (345)
Q Consensus 235 s~pl~~~p~~~~l~~~~~~~----------~~~~~~r~~~v--~~~~~vA~~--vp----~~~~i~~l~Ga~~~~~l~fi 296 (345)
+.--..+...+.+...-+++ |++.-.+..++ +++.++... .| .++.+.++. ..+..+.|.
T Consensus 289 ~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~y~ 366 (445)
T 3l1l_A 289 SLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVS--VIFTLVPYL 366 (445)
T ss_dssp THHHHHHHHHHHHHHHHHTTSSCGGGGCCCTTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH--HHHHHHHHH
Confidence 55444554555444333221 11111122211 122222222 22 245555553 356678999
Q ss_pred HHHHHHHHHhcccC
Q 019141 297 LPALFHLIVFKQEL 310 (345)
Q Consensus 297 lP~l~~~~~~~~~~ 310 (345)
++++.+++.||+++
T Consensus 367 ~~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 367 YTCAALLLLGHGHF 380 (445)
T ss_dssp HHHHHHHHHHSSSS
T ss_pred HHHHHHHHHhhcCc
Confidence 99999999987543
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.05 E-value=9.5e-09 Score=97.35 Aligned_cols=288 Identities=13% Similarity=0.072 Sum_probs=153.6
Q ss_pred chhhhhhhcCCCCcCChhhhhHHhhccc--hhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhH
Q 019141 7 TRRKLETIHGFSKINSFGDLGYTVCGSV--GRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKAL 84 (345)
Q Consensus 7 c~~~~~~~~~~~~~~~y~~l~~~~~G~~--~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (345)
|+.++..+ .|+....-+..++.+|++ +.+ ......+........+....++.+...++....+ .....
T Consensus 58 ~~~el~~~--~P~~Gg~y~~~~~~~G~~~~~g~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~~~~~ 127 (444)
T 3gia_A 58 SYTKLGAK--IVSNAGPIAFIHKAIGDNIITGA-LSILLWMSYVISIALFAKGFAGYFLPLINAPINT-------FNIAI 127 (444)
T ss_dssp HHHHHHTT--CCCTTTHHHHHHHHHCSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCH-------HHHHH
T ss_pred HHHHHHhh--CCCCCcHHHhHHHHhCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch-------HHHHH
Confidence 44555554 345556678889999996 333 3455556666667777778888877766532111 11111
Q ss_pred HHHHHHHHHHhhcccCCCCchhhHHHHHHHHHHHHhhheeeeeccc--ccccCCccccccCcchhhHHHhhhhhhhccee
Q 019141 85 YIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMI--SMKQRPALKAFGDFSVFSYGIGVAVYAFEGVG 162 (345)
Q Consensus 85 ~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~ 162 (345)
...+.. ...-....+..|..+.+........+...+..++..... ..+..++.. ..++.++..+++...|+|.|..
T Consensus 128 ~~~~~~-~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~a~~G~e 205 (444)
T 3gia_A 128 TEIGIV-AFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLA-PSAVSGMIFASAIFFLSYMGFG 205 (444)
T ss_dssp HHHHHH-HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCS-HHHHHHHHHHHHHGGGGGTHHH
T ss_pred HHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcCCCCC-CcchHHHHHHHHHHHHHHHhHH
Confidence 111111 122233344555555555444433333222222111111 111111111 1134567888999999999999
Q ss_pred eeccchhhcccchh-hhhhHHHHHHHHHHHHHHHhhhhhheecCcc----ccceecc-cC---CchHHHHHHHHHHHHHH
Q 019141 163 MILPLESETRNKQR-FGRILGWCMAFISLLYGSFGALGYFAFGEET----KDIITTN-FG---AGLVSTLVNVGLCVNLF 233 (345)
Q Consensus 163 ~~~~i~~~m~~p~~-~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~----~~~i~~n-~~---~~~~~~~~~~~~~i~~~ 233 (345)
......+|+|||+| .+|++..+..+..++|....+......+.+. +++.... .. .++...+..+...+..+
T Consensus 206 ~~~~~~~e~k~P~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 285 (444)
T 3gia_A 206 VITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSIS 285 (444)
T ss_dssp HHHTTGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999955 8999999999999999988776555544321 1111111 10 11222334444444444
Q ss_pred hhcccchhhHHHHHHhhhcc----------cc-cchHHHHHHHHHHHHHHhhcCCccchhhhcchhhHHHHHHHHHHHHH
Q 019141 234 LTFPLMMNPVYEVVERRFCD----------YR-YCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFH 302 (345)
Q Consensus 234 ~s~pl~~~p~~~~l~~~~~~----------~~-~~~~~r~~~v~~~~~vA~~vp~~~~i~~l~Ga~~~~~l~filP~l~~ 302 (345)
.+.--......+.+...-++ ++ .+...-....+++.+++. ..+++.+.++ +..+..+.|.++.+.+
T Consensus 286 ~~~~~~~~~~sR~l~a~a~dg~lP~~f~~~~~~~P~~a~~~~~~~~~~~~~-~~~~~~l~~~--~~~~~~~~~~~~~~~~ 362 (444)
T 3gia_A 286 SAMNATIYGGANVAYSLAKDGELPEFFERKVWFKSTEGLYITSALGVLFAL-LFNMEGVASI--TSAVFMVIYLFVILSH 362 (444)
T ss_dssp HHHHHHHTTTHHHHHHHHHHSSCCSSCCTTSCCSCTHHHHHHHHHHHHHHH-HSCHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHhCCCCCCCcHHHHHHHHHHHHHHH-HcCHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 44433344333333322211 11 111111111112222222 3467777777 3556778999999999
Q ss_pred HHHhccc
Q 019141 303 LIVFKQE 309 (345)
Q Consensus 303 ~~~~~~~ 309 (345)
++.||++
T Consensus 363 ~~~r~~~ 369 (444)
T 3gia_A 363 YILIDEV 369 (444)
T ss_dssp HHTHHHH
T ss_pred HHhhhcC
Confidence 9988754
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.01 E-value=3.3e-08 Score=95.39 Aligned_cols=290 Identities=10% Similarity=0.027 Sum_probs=150.0
Q ss_pred chhhhhhhcCCCCcCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhh--hccCCcccccccccchhH
Q 019141 7 TRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMI--NNSTTSQTILGFLSPKAL 84 (345)
Q Consensus 7 c~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~--~~~~~~~~~~~~~~~~~~ 84 (345)
|+.++......+ ....-...++.+|++.+++......+.......++....++.+...+ +..... + .....
T Consensus 60 ~~ael~s~~~~P-~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~--~~~~~ 132 (511)
T 4djk_A 60 CAAEMATVDGWE-EGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNED----P--ITKTI 132 (511)
T ss_dssp HHHHHHTTSCC----CHHHHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTSC----S--SHHHH
T ss_pred HHHHHcccccCC-CCChhhhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccC----c--HHHHH
Confidence 344444400245 56677788999999999999988888888777777777777665442 111111 1 11122
Q ss_pred HHHHHHHHHHhhcccCCCCchhhHHHHHHHH-HHH---Hhh-heeeeecc-ccc--c-cCCc-cccccCcchhhHHHhhh
Q 019141 85 YIWGCFPFQLGLNSIPTLTHLAPLSIFADIV-DLG---AMG-LVMVEDVM-ISM--K-QRPA-LKAFGDFSVFSYGIGVA 154 (345)
Q Consensus 85 ~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~-~~~---~~~-~v~~~~~~-~~~--~-~~~~-~~~~~~~~~~~~~~~~~ 154 (345)
+.++.. ...-....+..|....+..+.... .+. .++ ..+..... +.. + +... .+.+ +..+...++...
T Consensus 133 ~~~~~~-~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 210 (511)
T 4djk_A 133 AALIIL-WALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDF-SKVGTLVVFVAF 210 (511)
T ss_dssp HHHHHH-HHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCT-TSTTTTTTHHHH
T ss_pred HHHHHH-HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCc-ccchHHHHHHHH
Confidence 222221 222233345566666655543322 111 111 11110000 000 0 0011 1111 112345678888
Q ss_pred hhhhcceeeeccchhhcccch-hhhhhHHHHHHHHHHHHHHHhhhhhheecCcccc---c-------eecccC--CchHH
Q 019141 155 VYAFEGVGMILPLESETRNKQ-RFGRILGWCMAFISLLYGSFGALGYFAFGEETKD---I-------ITTNFG--AGLVS 221 (345)
Q Consensus 155 ~faf~~~~~~~~i~~~m~~p~-~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~~---~-------i~~n~~--~~~~~ 221 (345)
+|+|.|........+|+|||+ +.+|++..+..+..++|.+..+.-....+++... . +..+.+ ..+..
T Consensus 211 ~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 290 (511)
T 4djk_A 211 ILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTV 290 (511)
T ss_dssp HHHHTTGGGGTGGGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHH
T ss_pred HHHHhhHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHH
Confidence 999999999999999999985 5899999999999999999888766666543211 1 112233 23445
Q ss_pred HHHHHHHHHHHHhhcccchhhHHHHHHh-----hhcc-----cccchHHHHHHH--HHHHHHHhhcCC--------ccch
Q 019141 222 TLVNVGLCVNLFLTFPLMMNPVYEVVER-----RFCD-----YRYCLWLRWAVV--LGVSLVALLVPN--------FADF 281 (345)
Q Consensus 222 ~~~~~~~~i~~~~s~pl~~~p~~~~l~~-----~~~~-----~~~~~~~r~~~v--~~~~~vA~~vp~--------~~~i 281 (345)
.+..+...++.+.+.--......+.+.. .+.+ +++..-.+..++ ....+..+.+++ ++.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~~~~~~~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l 370 (511)
T 4djk_A 291 RVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMNKNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIA 370 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHTCHHHHGGGCSSSCCCCCSSSCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 5555555555555443333333333322 2211 111111121111 222223334454 3445
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHHhc
Q 019141 282 LSLVGSSVCCILGFVLPALFHLIVFK 307 (345)
Q Consensus 282 ~~l~Ga~~~~~l~filP~l~~~~~~~ 307 (345)
.++ +..+..+.|.+|.+.+++.++
T Consensus 371 ~~~--~~~~~~~~y~~~~~~~~~~r~ 394 (511)
T 4djk_A 371 LAL--TVVIYLCAYFMLFIGYIVLVL 394 (511)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 444 234566788889887777664
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=97.90 E-value=8.3e-05 Score=71.37 Aligned_cols=266 Identities=15% Similarity=0.021 Sum_probs=134.4
Q ss_pred cCChhhhhHHhhccchhhHHHHHHHHHhhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHHhhccc
Q 019141 20 INSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSI 99 (345)
Q Consensus 20 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~ 99 (345)
..++.++.|..||++|..+..++..+.++|-........++.+...++..... .+.....+++.++.++...
T Consensus 87 Gl~~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~-------~~~~v~~~i~~~l~~~~~~- 158 (501)
T 2jln_A 87 GINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGF-------TNLPLWIVIFGAIQVVTTF- 158 (501)
T ss_dssp CCCHHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHT-
T ss_pred CCChhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------chHHHHHHHHHHHHHHHHH-
Confidence 34699999999999999999999999999999998888998888876532111 1112333444444555553
Q ss_pred CCCCchhhHHHHHHHHHHHHhhheeeeeccc-cc--ccCCccccccCcchhhHHHhh-hhhhhcceeeeccchhhcccch
Q 019141 100 PTLTHLAPLSIFADIVDLGAMGLVMVEDVMI-SM--KQRPALKAFGDFSVFSYGIGV-AVYAFEGVGMILPLESETRNKQ 175 (345)
Q Consensus 100 ~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~-~~faf~~~~~~~~i~~~m~~p~ 175 (345)
...+.+.++..++....++..+...+..... .. .+..+.+......++..++.. ..+.-....+.++..+.+|+++
T Consensus 159 ~G~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~ 238 (501)
T 2jln_A 159 YGITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDP 238 (501)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCT
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCc
Confidence 3456666666555443333332222211111 00 000000000122234444433 2222233356788889998876
Q ss_pred h------------hhhhHHHHHHHHHHHHHHHhhhhhheecCccccceecc-cCCc-hHHHHHH-HHHHHHHHhhccc-c
Q 019141 176 R------------FGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTN-FGAG-LVSTLVN-VGLCVNLFLTFPL-M 239 (345)
Q Consensus 176 ~------------~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~~~~~~i~~n-~~~~-~~~~~~~-~~~~i~~~~s~pl-~ 239 (345)
+ .......+..+...+...+|.......++.....++.. +++. .+....- +...++.+.+--. .
T Consensus 239 ~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n 318 (501)
T 2jln_A 239 NASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAAN 318 (501)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred cccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6 22333344555555555555543322222222223333 2221 2133343 4455555444443 6
Q ss_pred hhhHHHHHHhhhccc-ccchHHHHHHHHHHHHHHhhc--CCccchhhhcchhhHHHHH
Q 019141 240 MNPVYEVVERRFCDY-RYCLWLRWAVVLGVSLVALLV--PNFADFLSLVGSSVCCILG 294 (345)
Q Consensus 240 ~~p~~~~l~~~~~~~-~~~~~~r~~~v~~~~~vA~~v--p~~~~i~~l~Ga~~~~~l~ 294 (345)
.++....+.+..++. +++.+ ..+..++...++... ..+.+++++.|.+.+....
T Consensus 319 ~ys~~~~l~~~~~~~i~~~~~-~~i~~vi~~~i~~~~~~~~f~~FL~~lg~~l~P~~g 375 (501)
T 2jln_A 319 LLSPAYTLCSTFPRVFTFKTG-VIVSAVVGLLMMPWQFAGVLNTFLNLLASALGPLAG 375 (501)
T ss_dssp THHHHHHHHHHSTTTCCHHHH-HHHHHHHHHHTCGGGTHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHhCccccchhHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 778777787776542 22222 222222233333222 2355566666666555444
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=96.58 E-value=0.15 Score=48.94 Aligned_cols=89 Identities=11% Similarity=-0.007 Sum_probs=47.7
Q ss_pred CCcCChhhhhHHhhccchhhHHHHHHHHHhhh-hhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHHhh
Q 019141 18 SKINSFGDLGYTVCGSVGRVAVDAMIVLAQAG-FCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGL 96 (345)
Q Consensus 18 ~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g-~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl 96 (345)
.+..|..|.-|+-||++.|.+..+...+.... .+.+.+...+..++.+++ .+...-+++..++..-.
T Consensus 80 ~~~~T~~e~l~~Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G------------i~~~~~i~i~~~i~~~Y 147 (530)
T 3dh4_A 80 KGIYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG------------IPLMYSILGLALFALVY 147 (530)
T ss_dssp TTCCSHHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT------------CCHHHHHHHHHHHHHHT
T ss_pred cCCccHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------CCHHHHHHHHHHHHHHH
Confidence 47889999999999999888877665443222 222333333444444433 12233334444444556
Q ss_pred cccCCCCchhhHHHHHHHHHHH
Q 019141 97 NSIPTLTHLAPLSIFADIVDLG 118 (345)
Q Consensus 97 ~~~~~l~~l~~~s~~~~~~~~~ 118 (345)
.....++...+.-.+=.+.++.
T Consensus 148 t~~GGl~aV~~TD~iQ~~im~~ 169 (530)
T 3dh4_A 148 SIYGGLSAVVWTDVIQVFFLVL 169 (530)
T ss_dssp TC------CCSHHHHHHHHHHH
T ss_pred HHhcchHHHHHHHHHHHHHHHH
Confidence 7777888877777655554443
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=94.98 E-value=0.87 Score=44.28 Aligned_cols=89 Identities=11% Similarity=-0.006 Sum_probs=48.4
Q ss_pred CCcCChhhhhHHhhccchhhHHHHHHHHH-hhhhhhhhHHhHHhhHHHhhhccCCcccccccccchhHHHHHHHHHHHhh
Q 019141 18 SKINSFGDLGYTVCGSVGRVAVDAMIVLA-QAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGL 96 (345)
Q Consensus 18 ~~~~~y~~l~~~~~G~~~~~~~~~~~~~~-~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl 96 (345)
.+..|..|.-+.=||++.+.+..+...+. .+......+...+..++.+++ .+....+++..++..-.
T Consensus 109 ~~~~T~~e~l~~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G------------i~~~~~i~i~~~i~~~Y 176 (593)
T 2xq2_A 109 KGIYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG------------IPLMYSILGLALFALVY 176 (593)
T ss_dssp TTCCSHHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------ccHHHHHHHHHHHHHHH
Confidence 47889999999999998887776654432 222222233334444555443 11223333334444555
Q ss_pred cccCCCCchhhHHHHHHHHHHH
Q 019141 97 NSIPTLTHLAPLSIFADIVDLG 118 (345)
Q Consensus 97 ~~~~~l~~l~~~s~~~~~~~~~ 118 (345)
.....++...+.-.+=.+.++.
T Consensus 177 t~~GGl~av~~TD~iQ~iiml~ 198 (593)
T 2xq2_A 177 SIYGGLSAVVWTDVIQVFFLVL 198 (593)
T ss_dssp HHTTC---CCHHHHHHHHHHHH
T ss_pred HHhcchHHHHHHHHHHHHHHHH
Confidence 6777777777766655444433
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=89.92 E-value=14 Score=35.18 Aligned_cols=112 Identities=12% Similarity=0.036 Sum_probs=55.7
Q ss_pred hhcccCCC-CchhhHHHHHHHHHHHHhhheeeeecc--c-------ccc--cCCccccccCcchhhHHHhhhhhhhcc-e
Q 019141 95 GLNSIPTL-THLAPLSIFADIVDLGAMGLVMVEDVM--I-------SMK--QRPALKAFGDFSVFSYGIGVAVYAFEG-V 161 (345)
Q Consensus 95 pl~~~~~l-~~l~~~s~~~~~~~~~~~~~v~~~~~~--~-------~~~--~~~~~~~~~~~~~~~~~~~~~~faf~~-~ 161 (345)
-++..|.+ |..+..+.+..-...+..++.++++.. . +.+ -.||.+...+..-...+.+-..|+.+. .
T Consensus 180 ~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~~vw~~A~gQ~FFSLslG~ 259 (519)
T 2a65_A 180 VSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGF 259 (519)
T ss_dssp HHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhCCHHHHHHHHHHHHHHhHHHH
Confidence 35666666 446666655443333333322222221 1 110 123443333444567788888888854 5
Q ss_pred eeeccchhhcccchhhhhhHHHHHHHHHHHH-----HHHhhhhhheecCc
Q 019141 162 GMILPLESETRNKQRFGRILGWCMAFISLLY-----GSFGALGYFAFGEE 206 (345)
Q Consensus 162 ~~~~~i~~~m~~p~~~~~~~~~a~~i~~~~Y-----~~~g~~gy~~fG~~ 206 (345)
..+...-+.+++.++..|........-+..- .+++..||.++|.+
T Consensus 260 G~~ity~SY~~~~~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a~g~~ 309 (519)
T 2a65_A 260 GAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVA 309 (519)
T ss_dssp SHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCHH
T ss_pred hHHhhhhcccCCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 5566667777777776654333333333322 23334566555533
No 8
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=75.61 E-value=12 Score=31.73 Aligned_cols=43 Identities=12% Similarity=0.275 Sum_probs=34.9
Q ss_pred CCchHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhcccccch
Q 019141 216 GAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYCL 258 (345)
Q Consensus 216 ~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~ 258 (345)
+.+.+..-.++....+++.+.|..++-.-..+...+.+++++.
T Consensus 57 ~~e~f~~~lkvs~~~g~~~a~P~ilyQiw~Fi~PgLy~~Err~ 99 (249)
T 4b4a_A 57 PTEPLFILIKISLAVGFIIASPVILYQFWRFIEPALYSHEKRA 99 (249)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCTTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHHH
Confidence 3457788889999999999999999888888888887666553
No 9
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=57.90 E-value=26 Score=29.65 Aligned_cols=57 Identities=9% Similarity=0.256 Sum_probs=40.3
Q ss_pred chHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhcccccchHHHHHHHHHHHHHHhhcC
Q 019141 218 GLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYCLWLRWAVVLGVSLVALLVP 276 (345)
Q Consensus 218 ~~~~~~~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~r~~~v~~~~~vA~~vp 276 (345)
++...+.+....+.+.+-.|+...-+ ...+.++.+..+...|...+....+.|+.-|
T Consensus 148 ~Yl~fv~~l~l~fGl~FelPvi~~~L--~~~Giv~~~~l~~~Rr~~iv~~~v~aAiiTP 204 (249)
T 4b4a_A 148 MYISFVLKLVVAFGIAFEMPIVLYVL--QKAGVITPEQLASFRKYFIVIAFVIGAIIAP 204 (249)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHH--HHTTSSCHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCCcCHHHHHHHhHHHHHHHHHHHHHHCC
Confidence 46778888888888888888865433 2224445555666667788877777788889
No 10
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=28.57 E-value=1.8e+02 Score=24.46 Aligned_cols=35 Identities=14% Similarity=-0.052 Sum_probs=22.1
Q ss_pred hcccchhhhhhHHHHHHHHHHHHHHHhhhhhheecC
Q 019141 170 ETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGE 205 (345)
Q Consensus 170 ~m~~p~~~~~~~~~a~~i~~~~Y~~~g~~gy~~fG~ 205 (345)
.+.+| ++++.+.....+..++|.......+...++
T Consensus 23 ~i~~p-~lr~~vl~Pllinl~L~~~~~~~~~~~~~~ 57 (249)
T 3tx3_A 23 LIRTK-GLRRYVVVPILTNLILFSLAFTWLYGEVDY 57 (249)
T ss_dssp HHTST-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445 678888888888888776655443333343
No 11
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=20.38 E-value=1.1e+02 Score=18.22 Aligned_cols=28 Identities=11% Similarity=-0.021 Sum_probs=12.7
Q ss_pred chhhhcchhhHHHHHHHHHHHHHHHHhcc
Q 019141 280 DFLSLVGSSVCCILGFVLPALFHLIVFKQ 308 (345)
Q Consensus 280 ~i~~l~Ga~~~~~l~filP~l~~~~~~~~ 308 (345)
...+.+|++....+. .+=..+|+|-+++
T Consensus 13 IA~gVVgGv~~~~ii-~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 13 IATGMVGALLLLLVV-ALGIGLFMRRRHI 40 (44)
T ss_dssp STHHHHHHHHHHHHH-HHHHHHHHHTTTC
T ss_pred EEeehhHHHHHHHHH-HHHHHHHhhhhHh
Confidence 344555555554332 2333445554443
Done!