Query 019142
Match_columns 345
No_of_seqs 159 out of 749
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 07:02:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019142.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019142hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1724 SCF ubiquitin ligase, 100.0 5.5E-42 1.2E-46 305.4 14.1 146 1-148 3-157 (162)
2 COG5201 SKP1 SCF ubiquitin lig 100.0 1.1E-36 2.4E-41 262.0 12.1 143 2-148 1-152 (158)
3 smart00512 Skp1 Found in Skp1 99.9 3.4E-25 7.3E-30 182.3 10.1 101 2-103 1-104 (104)
4 PF01466 Skp1: Skp1 family, di 99.9 4.1E-23 9E-28 163.1 3.8 73 76-148 1-73 (78)
5 PF03931 Skp1_POZ: Skp1 family 99.7 8.8E-17 1.9E-21 121.8 5.6 61 3-67 1-61 (62)
6 KOG3473 RNA polymerase II tran 99.4 2.7E-13 5.8E-18 112.5 7.4 96 2-103 16-112 (112)
7 PF00651 BTB: BTB/POZ domain; 98.1 3.2E-05 7E-10 62.0 9.7 98 3-116 11-109 (111)
8 PHA02713 hypothetical protein; 97.7 0.00015 3.3E-09 75.8 10.1 104 4-127 27-132 (557)
9 smart00225 BTB Broad-Complex, 97.6 0.00025 5.5E-09 53.1 6.6 85 9-111 5-90 (90)
10 PHA03098 kelch-like protein; P 97.2 0.0021 4.6E-08 65.8 10.5 96 5-122 12-109 (534)
11 PHA02790 Kelch-like protein; P 97.1 0.0015 3.2E-08 67.1 7.5 96 7-120 25-122 (480)
12 KOG4441 Proteins containing BT 96.5 0.0078 1.7E-07 63.7 7.9 94 5-117 39-133 (571)
13 KOG2716 Polymerase delta-inter 92.4 0.69 1.5E-05 44.3 8.5 96 10-121 11-108 (230)
14 KOG3433 Protein involved in me 83.2 0.97 2.1E-05 42.1 2.7 37 96-137 162-200 (203)
15 COG5124 Protein predicted to b 82.9 0.94 2E-05 42.1 2.5 32 102-138 174-205 (209)
16 KOG4682 Uncharacterized conser 77.8 4.8 0.0001 41.8 5.8 97 10-123 76-175 (488)
17 KOG0783 Uncharacterized conser 75.7 3.2 7E-05 46.5 4.2 109 6-128 714-825 (1267)
18 PF07928 Vps54: Vps54-like pro 70.6 3.9 8.4E-05 35.9 2.8 121 11-171 1-126 (135)
19 PF02214 BTB_2: BTB/POZ domain 68.0 2.5 5.4E-05 33.6 1.0 84 11-110 6-94 (94)
20 PF11822 DUF3342: Domain of un 67.9 8.5 0.00018 38.6 4.8 90 13-118 14-104 (317)
21 KOG4350 Uncharacterized conser 62.8 44 0.00095 35.2 8.9 148 5-163 47-217 (620)
22 PF03962 Mnd1: Mnd1 family; I 49.4 16 0.00034 33.8 2.9 42 91-137 144-187 (188)
23 PLN03083 E3 UFM1-protein ligas 48.1 8.6 0.00019 42.9 1.2 31 292-322 511-542 (803)
24 PF14384 DUF4415: Domain of un 40.7 24 0.00053 26.8 2.3 26 293-318 34-59 (62)
25 PF09278 MerR-DNA-bind: MerR, 38.7 49 0.0011 24.3 3.7 39 119-171 13-51 (65)
26 PF15063 TC1: Thyroid cancer p 36.4 22 0.00047 28.9 1.5 42 112-153 28-69 (79)
27 PRK05365 malonic semialdehyde 35.0 26 0.00056 31.5 2.0 34 94-137 131-164 (195)
28 KOG2002 TPR-containing nuclear 33.7 37 0.0008 38.8 3.2 7 190-196 882-888 (1018)
29 KOG0511 Ankyrin repeat protein 32.8 1.2E+02 0.0025 31.9 6.3 102 14-119 302-431 (516)
30 cd02148 Nitroreductase_5 Nitro 31.3 30 0.00066 30.7 1.8 34 94-137 124-157 (185)
31 PF03656 Pam16: Pam16; InterP 29.2 54 0.0012 28.8 2.9 28 117-144 51-78 (127)
32 PF05553 DUF761: Cotton fibre 28.9 52 0.0011 23.2 2.2 26 292-319 3-28 (38)
33 KOG2422 Uncharacterized conser 27.1 22 0.00047 38.7 0.1 40 273-313 150-192 (665)
34 KOG1665 AFH1-interacting prote 24.3 1.1E+02 0.0023 30.1 4.2 83 11-110 16-103 (302)
35 PF12112 DUF3579: Protein of u 23.9 44 0.00095 28.0 1.3 14 307-320 23-36 (92)
36 TIGR01689 EcbF-BcbF capsule bi 23.0 1.5E+02 0.0033 25.6 4.6 20 50-69 60-79 (126)
37 PF14748 P5CR_dimer: Pyrroline 22.0 2.4E+02 0.0052 23.4 5.4 71 93-163 26-103 (107)
38 PRK11053 dihydropteridine redu 21.6 72 0.0016 29.1 2.4 34 91-134 147-180 (217)
39 PF01484 Col_cuticle_N: Nemato 20.6 72 0.0016 22.6 1.8 23 289-311 30-52 (53)
No 1
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-42 Score=305.39 Aligned_cols=146 Identities=35% Similarity=0.548 Sum_probs=133.7
Q ss_pred CCceEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCccccCCCCCCHHHHHHHHHHHhhcCCCCC---------
Q 019142 1 MKSYIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGR--------- 71 (345)
Q Consensus 1 ~~~~IkL~SSDG~iFeVs~~aA~qS~tIr~mLed~g~g~~~~~~IPLP~nVss~iLkkIIEYCe~Hk~~~~--------- 71 (345)
++++|+|+||||++|+|+.++|++|.+|++++.+.|++... .+|||| +|+|.||++||+||+||+.+++
T Consensus 3 ~~~~ikL~SsDG~~f~ve~~~a~~s~~i~~~~~~~~~~~~~-~~IPl~-nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~ 80 (162)
T KOG1724|consen 3 SKKKIKLESSDGEIFEVEEEVARQSQTISAHMIEDGCADEN-DPIPLP-NVTSKILKKVIEWCKKHKDDDPANPEDKELP 80 (162)
T ss_pred CCCeEEEEccCCceeehhHHHHHHhHHHHHHHHHcCCCccC-CccccC-ccCHHHHHHHHHHHHHccccccccccccccc
Confidence 36799999999999999999999999999999999886432 699999 7999999999999999998632
Q ss_pred CccccccccccccccChHHHHHHHhhhhcCCcchHHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCChHhhhcccccc
Q 019142 72 SNKERKMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNV 148 (345)
Q Consensus 72 s~~eik~WD~eFLkiD~~~LfELI~AAnYLdIk~LldLtcq~VA~~IkGKS~EEIRe~FgI~nD~TpEEE~Ei~~~~ 148 (345)
....++.||++|+++|..+||+|+.|||||+|++|+++||++||+||+||||+|||++|||++|+||||+.++++++
T Consensus 81 ~~~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f~I~~d~t~eE~~~~~~e~ 157 (162)
T KOG1724|consen 81 EETDIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIFNIENDETPEEEEAIRKEN 157 (162)
T ss_pred ccCCccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHcCCCCCCChhHHHHHhhcc
Confidence 23348999999999999999999999999999999999999999999999999999999999999999988887765
No 2
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-36 Score=262.01 Aligned_cols=143 Identities=32% Similarity=0.503 Sum_probs=130.2
Q ss_pred CceEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCccccCCCCCCHHHHHHHHHHHhhcCCCC---CC------
Q 019142 2 KSYIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPG---RS------ 72 (345)
Q Consensus 2 ~~~IkL~SSDG~iFeVs~~aA~qS~tIr~mLed~g~g~~~~~~IPLP~nVss~iLkkIIEYCe~Hk~~~---~s------ 72 (345)
+++|.|.|.||.+|.|+..+|..|-+|++|+.+.+. -+.|||+| +|.|.+|.+|++||+||.... .+
T Consensus 1 ~s~i~l~s~dge~F~vd~~iAerSiLikN~l~d~~~---~n~p~p~p-nVrSsvl~kv~ew~ehh~~s~sede~d~~~rk 76 (158)
T COG5201 1 MSMIELESIDGEIFRVDENIAERSILIKNMLCDSTA---CNYPIPAP-NVRSSVLMKVQEWMEHHTSSLSEDENDLEIRK 76 (158)
T ss_pred CCceEEEecCCcEEEehHHHHHHHHHHHHHhccccc---cCCCCccc-chhHHHHHHHHHHHHhccccCCCccChHhhhc
Confidence 468999999999999999999999999999987654 37789999 899999999999999999742 11
Q ss_pred ccccccccccccccChHHHHHHHhhhhcCCcchHHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCChHhhhcccccc
Q 019142 73 NKERKMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNV 148 (345)
Q Consensus 73 ~~eik~WD~eFLkiD~~~LfELI~AAnYLdIk~LldLtcq~VA~~IkGKS~EEIRe~FgI~nD~TpEEE~Ei~~~~ 148 (345)
......||..|+.+|+++|+++++|||||+|++|+++||+.||.||+||||+|||++|||++||||||++.+++++
T Consensus 77 s~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkSpeeir~tfni~ndfTpEEe~~irkEn 152 (158)
T COG5201 77 SKPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKSPEEIRETFNIENDFTPEEERRIRKEN 152 (158)
T ss_pred cCCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCCHHHHHHHhCCCCCCCHHHHHHHHHhc
Confidence 1234569999999999999999999999999999999999999999999999999999999999999999999876
No 3
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=99.92 E-value=3.4e-25 Score=182.32 Aligned_cols=101 Identities=32% Similarity=0.499 Sum_probs=89.4
Q ss_pred CceEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCccccCCCCCCHHHHHHHHHHHhhcCCCCCCc---ccccc
Q 019142 2 KSYIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSN---KERKM 78 (345)
Q Consensus 2 ~~~IkL~SSDG~iFeVs~~aA~qS~tIr~mLed~g~g~~~~~~IPLP~nVss~iLkkIIEYCe~Hk~~~~s~---~eik~ 78 (345)
+++|+|+|+||++|.|+.++|++|++|++|+.+.|.+.....+|||| +|++.+|++|++||+||+.++... ..++.
T Consensus 1 ~~~v~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~~~~~~Ipl~-~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~ 79 (104)
T smart00512 1 SKYIKLISSDGEVFEVEREVARQSKTIKAMIEDLGVDDENNNPIPLP-NVTSKILSKVIEYCEHHVDDPPSVADKDDIPT 79 (104)
T ss_pred CCeEEEEeCCCCEEEecHHHHHHHHHHHHHHHccCcccCCCCCccCC-CcCHHHHHHHHHHHHHcccCCCCccccccccH
Confidence 36899999999999999999999999999999877643333699999 899999999999999999864322 35799
Q ss_pred ccccccccChHHHHHHHhhhhcCCc
Q 019142 79 FDEKFIRMDTKKLCELTSAADSLQL 103 (345)
Q Consensus 79 WD~eFLkiD~~~LfELI~AAnYLdI 103 (345)
||.+|++++.++||+|+.||+||+|
T Consensus 80 wD~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 80 WDAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999997
No 4
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=99.87 E-value=4.1e-23 Score=163.14 Aligned_cols=73 Identities=38% Similarity=0.616 Sum_probs=63.0
Q ss_pred cccccccccccChHHHHHHHhhhhcCCcchHHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCChHhhhcccccc
Q 019142 76 RKMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNV 148 (345)
Q Consensus 76 ik~WD~eFLkiD~~~LfELI~AAnYLdIk~LldLtcq~VA~~IkGKS~EEIRe~FgI~nD~TpEEE~Ei~~~~ 148 (345)
+++||++|++++.+.||+|+.||+||+|++|+++||++||.+|+||||+|||++|||++|+||||++++++++
T Consensus 1 l~~wD~~F~~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~eee~~i~~e~ 73 (78)
T PF01466_consen 1 LPEWDQEFLDVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTPEEEEEIRKEN 73 (78)
T ss_dssp HHHHHHHHT-S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSHHHHHHHHHHC
T ss_pred CCHHHHHHHHcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHHHHHHHHHHc
Confidence 4789999999999999999999999999999999999999999999999999999999999999999987754
No 5
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=99.66 E-value=8.8e-17 Score=121.81 Aligned_cols=61 Identities=26% Similarity=0.436 Sum_probs=53.8
Q ss_pred ceEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCccccCCCCCCHHHHHHHHHHHhhcC
Q 019142 3 SYIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQ 67 (345)
Q Consensus 3 ~~IkL~SSDG~iFeVs~~aA~qS~tIr~mLed~g~g~~~~~~IPLP~nVss~iLkkIIEYCe~Hk 67 (345)
.+|+|+|+||++|.|+.++|++|++|++|+++.+.. ..+|||| +|++.+|++|++||+||+
T Consensus 1 ~~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~~~~~---~~~Ipl~-~v~~~~L~kViewc~~H~ 61 (62)
T PF03931_consen 1 MYVKLVSSDGQEFEVSREAAKQSKTIKNMLEDLGDE---DEPIPLP-NVSSRILKKVIEWCEHHK 61 (62)
T ss_dssp -EEEEEETTSEEEEEEHHHHTTSHHHHHHHHCTCCC---GTEEEET-TS-HHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCEEEeeHHHHHHhHHHHHHHhhhccc---ccccccC-ccCHHHHHHHHHHHHhcC
Confidence 379999999999999999999999999999876653 2289999 899999999999999996
No 6
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=99.44 E-value=2.7e-13 Score=112.48 Aligned_cols=96 Identities=19% Similarity=0.199 Sum_probs=82.2
Q ss_pred CceEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCC-CCCCccccCCCCCCHHHHHHHHHHHhhcCCCCCCcccccccc
Q 019142 2 KSYIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMG-SSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFD 80 (345)
Q Consensus 2 ~~~IkL~SSDG~iFeVs~~aA~qS~tIr~mLed~g~g-~~~~~~IPLP~nVss~iLkkIIEYCe~Hk~~~~s~~eik~WD 80 (345)
+.+|+|+|+||..|.+.+++|+.|+||+.||...+.. ......+-++ ++.+.+|+||++|+.+...+..+..++++|
T Consensus 16 ~~yVkLvS~Ddhefiikre~AmtSgTiraml~gpg~~se~~~n~v~f~-di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF- 93 (112)
T KOG3473|consen 16 SMYVKLVSSDDHEFIIKREHAMTSGTIRAMLSGPGVFSEAEKNEVYFR-DIPSHILEKVCEYLAYKVRYTNSSTEIPEF- 93 (112)
T ss_pred hhheEeecCCCcEEEEeehhhhhhhHHHHHHcCCccccccccceEEec-cchHHHHHHHHHHhhheeeeccccccCCCC-
Confidence 3589999999999999999999999999999865543 2245679999 799999999999999877665555678888
Q ss_pred ccccccChHHHHHHHhhhhcCCc
Q 019142 81 EKFIRMDTKKLCELTSAADSLQL 103 (345)
Q Consensus 81 ~eFLkiD~~~LfELI~AAnYLdI 103 (345)
.+.+++.++|+.||+||++
T Consensus 94 ----~IppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 94 ----DIPPEMALELLMAANYLEC 112 (112)
T ss_pred ----CCCHHHHHHHHHHhhhhcC
Confidence 6789999999999999974
No 7
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=98.08 E-value=3.2e-05 Score=61.95 Aligned_cols=98 Identities=23% Similarity=0.290 Sum_probs=75.3
Q ss_pred ceEEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCCCCCCCccccCCCCCCHHHHHHHHHHHhhcCCCCCCccccccccc
Q 019142 3 SYIWVQTTDGSIQQVEEEVAM-FCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDE 81 (345)
Q Consensus 3 ~~IkL~SSDG~iFeVs~~aA~-qS~tIr~mLed~g~g~~~~~~IPLP~nVss~iLkkIIEYCe~Hk~~~~s~~eik~WD~ 81 (345)
..++|+..||..|.|.+.++. .|++++.++...+........|+++ ++++..+..+++||...... ++
T Consensus 11 ~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~l~~~Y~~~~~------~~---- 79 (111)
T PF00651_consen 11 SDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLP-DVSPEAFEAFLEYMYTGEIE------IN---- 79 (111)
T ss_dssp --EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEET-TSCHHHHHHHHHHHHHSEEE------EE----
T ss_pred CCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccc-cccccccccccccccCCccc------CC----
Confidence 468899999999999999996 6999999998763222223468888 79999999999999533211 11
Q ss_pred cccccChHHHHHHHhhhhcCCcchHHHHHHHHHHH
Q 019142 82 KFIRMDTKKLCELTSAADSLQLKPLVDLTSRALAR 116 (345)
Q Consensus 82 eFLkiD~~~LfELI~AAnYLdIk~LldLtcq~VA~ 116 (345)
..+.+.+|+.+|++|+|+.|.+.|+..+..
T Consensus 80 -----~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 80 -----SDENVEELLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp ------TTTHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 356689999999999999999999998754
No 8
>PHA02713 hypothetical protein; Provisional
Probab=97.74 E-value=0.00015 Score=75.84 Aligned_cols=104 Identities=11% Similarity=0.060 Sum_probs=83.2
Q ss_pred eEEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCCCC-CCCccccCCCCCCHHHHHHHHHHHhhcCCCCCCccccccccc
Q 019142 4 YIWVQTTDGSIQQVEEEVAM-FCPMICREIIQTGMGS-SKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDE 81 (345)
Q Consensus 4 ~IkL~SSDG~iFeVs~~aA~-qS~tIr~mLed~g~g~-~~~~~IPLP~nVss~iLkkIIEYCe~Hk~~~~s~~eik~WD~ 81 (345)
.|+|...+|+.|.+.+.++. .|++++.|+.. +..+ .....|.|. .|++.+|+.||+|+....
T Consensus 27 DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~-~~~e~~~~~~v~l~-~v~~~~~~~ll~y~Yt~~-------------- 90 (557)
T PHA02713 27 DVIITIGDGEEIKAHKTILAAGSKYFRTLFTT-PMIIRDLVTRVNLQ-MFDKDAVKNIVQYLYNRH-------------- 90 (557)
T ss_pred CEEEEeCCCCEEeehHHHHhhcCHHHHHHhcC-CchhhccCceEEec-cCCHHHHHHHHHHhcCCC--------------
Confidence 57888877999999999987 69999999864 3221 124578897 799999999999987631
Q ss_pred cccccChHHHHHHHhhhhcCCcchHHHHHHHHHHHHHhCCCHHHHH
Q 019142 82 KFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIR 127 (345)
Q Consensus 82 eFLkiD~~~LfELI~AAnYLdIk~LldLtcq~VA~~IkGKS~EEIR 127 (345)
++.+.+.+|+.||++|+|+.|.++||.++...+.-.+-=+|.
T Consensus 91 ----i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~ 132 (557)
T PHA02713 91 ----ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMY 132 (557)
T ss_pred ----CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHH
Confidence 245669999999999999999999999998877765554544
No 9
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=97.57 E-value=0.00025 Score=53.07 Aligned_cols=85 Identities=24% Similarity=0.257 Sum_probs=66.5
Q ss_pred eCCCCEEEecHHHHHH-cHHHHHHHhhcCCCCCCCccccCCCCCCHHHHHHHHHHHhhcCCCCCCccccccccccccccC
Q 019142 9 TTDGSIQQVEEEVAMF-CPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEKFIRMD 87 (345)
Q Consensus 9 SSDG~iFeVs~~aA~q-S~tIr~mLed~g~g~~~~~~IPLP~nVss~iLkkIIEYCe~Hk~~~~s~~eik~WD~eFLkiD 87 (345)
..+|..|.|.+.++.. |+.++.++..... ......|.++ ++++.++..|++||..... .++
T Consensus 5 ~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~-~~~~~~i~l~-~~~~~~f~~~l~~ly~~~~----------------~~~ 66 (90)
T smart00225 5 VVGGKKFKAHKAVLAACSPYFKALFSGDFK-ESKKSEIYLD-DVSPEDFRALLEFLYTGKL----------------DLP 66 (90)
T ss_pred EECCEEEehHHHHHhhcCHHHHHHHcCCCc-cCCCCEEEec-CCCHHHHHHHHHeecCcee----------------ecC
Confidence 5578999999998875 8999998864322 1135678898 7999999999999986432 123
Q ss_pred hHHHHHHHhhhhcCCcchHHHHHH
Q 019142 88 TKKLCELTSAADSLQLKPLVDLTS 111 (345)
Q Consensus 88 ~~~LfELI~AAnYLdIk~LldLtc 111 (345)
...+.+|+.+|.+++++.|.+.|+
T Consensus 67 ~~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 67 EENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred HHHHHHHHHHHHHHCcHHHHhhhC
Confidence 346889999999999999998874
No 10
>PHA03098 kelch-like protein; Provisional
Probab=97.22 E-value=0.0021 Score=65.84 Aligned_cols=96 Identities=17% Similarity=0.207 Sum_probs=76.5
Q ss_pred EEEE-eCCCCEEEecHHHHH-HcHHHHHHHhhcCCCCCCCccccCCCCCCHHHHHHHHHHHhhcCCCCCCcccccccccc
Q 019142 5 IWVQ-TTDGSIQQVEEEVAM-FCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEK 82 (345)
Q Consensus 5 IkL~-SSDG~iFeVs~~aA~-qS~tIr~mLed~g~g~~~~~~IPLP~nVss~iLkkIIEYCe~Hk~~~~s~~eik~WD~e 82 (345)
|+|. +.+|+.|.+.+.++. .|++++.|+...-. ...|.|+ . +..+|+.|++|+..-.
T Consensus 12 v~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~----~~~i~l~-~-~~~~~~~~l~y~Ytg~--------------- 70 (534)
T PHA03098 12 ESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK----ENEINLN-I-DYDSFNEVIKYIYTGK--------------- 70 (534)
T ss_pred EEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC----CceEEec-C-CHHHHHHHHHHhcCCc---------------
Confidence 4555 468999999999987 59999998864321 4678897 5 9999999999987643
Q ss_pred ccccChHHHHHHHhhhhcCCcchHHHHHHHHHHHHHhCCC
Q 019142 83 FIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKT 122 (345)
Q Consensus 83 FLkiD~~~LfELI~AAnYLdIk~LldLtcq~VA~~IkGKS 122 (345)
+.++.+.+.+|+.||++|+|+.|.++|++.+...|.-.+
T Consensus 71 -~~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~n 109 (534)
T PHA03098 71 -INITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNN 109 (534)
T ss_pred -eEEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhH
Confidence 234666799999999999999999999999987765443
No 11
>PHA02790 Kelch-like protein; Provisional
Probab=97.06 E-value=0.0015 Score=67.08 Aligned_cols=96 Identities=10% Similarity=0.100 Sum_probs=70.9
Q ss_pred EEeCCCCEEEecHHHH-HHcHHHHHHHhhcCCCCCCCccccCC-CCCCHHHHHHHHHHHhhcCCCCCCcccccccccccc
Q 019142 7 VQTTDGSIQQVEEEVA-MFCPMICREIIQTGMGSSKNYAISLP-QRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEKFI 84 (345)
Q Consensus 7 L~SSDG~iFeVs~~aA-~qS~tIr~mLed~g~g~~~~~~IPLP-~nVss~iLkkIIEYCe~Hk~~~~s~~eik~WD~eFL 84 (345)
+...-|..|.+.+.++ ..|++++.|+.. +..++. ..|.+. ..|++.+|+.||+|+.--+ +
T Consensus 25 ~~~~~~~~~~~HR~VLAa~S~YFraMF~~-~~~Es~-~~v~~~~~~v~~~~l~~lldy~YTg~----------------l 86 (480)
T PHA02790 25 IIEAIGGNIIVNSTILKKLSPYFRTHLRQ-KYTKNK-DPVTRVCLDLDIHSLTSIVIYSYTGK----------------V 86 (480)
T ss_pred EEEEcCcEEeeehhhhhhcCHHHHHHhcC-Cccccc-cceEEEecCcCHHHHHHHHHhheeee----------------E
Confidence 4445688999999995 569999999864 332222 234431 1699999999999974322 2
Q ss_pred ccChHHHHHHHhhhhcCCcchHHHHHHHHHHHHHhC
Q 019142 85 RMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEG 120 (345)
Q Consensus 85 kiD~~~LfELI~AAnYLdIk~LldLtcq~VA~~IkG 120 (345)
.++.+.+.+|+.||++|+|+.+++.||+++...|.-
T Consensus 87 ~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~ 122 (480)
T PHA02790 87 YIDSHNVVNLLRASILTSVEFIIYTCINFILRDFRK 122 (480)
T ss_pred EEecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence 355667899999999999999999999888776553
No 12
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.49 E-value=0.0078 Score=63.67 Aligned_cols=94 Identities=23% Similarity=0.300 Sum_probs=75.3
Q ss_pred EEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCCCCCCCccccCCCCCCHHHHHHHHHHHhhcCCCCCCccccccccccc
Q 019142 5 IWVQTTDGSIQQVEEEVAM-FCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEKF 83 (345)
Q Consensus 5 IkL~SSDG~iFeVs~~aA~-qS~tIr~mLed~g~g~~~~~~IPLP~nVss~iLkkIIEYCe~Hk~~~~s~~eik~WD~eF 83 (345)
+.|. -+|+.|.+.+-++. .|++++.|+.. +..+.....|.|. .|++.+|..+++|+....
T Consensus 39 v~L~-v~~~~~~aHR~VLAa~S~YFraMFt~-~l~e~~~~~i~l~-~v~~~~l~~ll~y~Yt~~---------------- 99 (571)
T KOG4441|consen 39 VTLL-VGDREFPAHRVVLAACSPYFRAMFTS-GLKESKQKEINLE-GVDPETLELLLDYAYTGK---------------- 99 (571)
T ss_pred EEEE-ECCeeechHHHHHHhccHHHHHHhcC-CcccccceEEEEe-cCCHHHHHHHHHHhhcce----------------
Confidence 3444 44588888888876 59999999874 3334456789998 699999999999987654
Q ss_pred cccChHHHHHHHhhhhcCCcchHHHHHHHHHHHH
Q 019142 84 IRMDTKKLCELTSAADSLQLKPLVDLTSRALARI 117 (345)
Q Consensus 84 LkiD~~~LfELI~AAnYLdIk~LldLtcq~VA~~ 117 (345)
+.++.+.+-+|+.||++|+|+.+++.||..+...
T Consensus 100 i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~ 133 (571)
T KOG4441|consen 100 LEISEDNVQELLEAASLLQIPEVVDACCEFLESQ 133 (571)
T ss_pred EEechHhHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3467788999999999999999999999888764
No 13
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=92.42 E-value=0.69 Score=44.26 Aligned_cols=96 Identities=24% Similarity=0.294 Sum_probs=74.8
Q ss_pred CCCCEEEecHHHHH-HcHHHHHHHhhcC-CCCCCCccccCCCCCCHHHHHHHHHHHhhcCCCCCCccccccccccccccC
Q 019142 10 TDGSIQQVEEEVAM-FCPMICREIIQTG-MGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEKFIRMD 87 (345)
Q Consensus 10 SDG~iFeVs~~aA~-qS~tIr~mLed~g-~g~~~~~~IPLP~nVss~iLkkIIEYCe~Hk~~~~s~~eik~WD~eFLkiD 87 (345)
--|.+|.-+...+. +.+.++.|++... ...+..+.|=| +=+++-+..|+.|++--..+ +|+ +
T Consensus 11 vGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI--DRSpKHF~~ILNfmRdGdv~------LPe--------~ 74 (230)
T KOG2716|consen 11 VGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI--DRSPKHFDTILNFMRDGDVD------LPE--------S 74 (230)
T ss_pred cCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe--cCChhHHHHHHHhhhccccc------Ccc--------c
Confidence 45889998888886 6889999888642 22233455666 58999999999999843221 332 5
Q ss_pred hHHHHHHHhhhhcCCcchHHHHHHHHHHHHHhCC
Q 019142 88 TKKLCELTSAADSLQLKPLVDLTSRALARIIEGK 121 (345)
Q Consensus 88 ~~~LfELI~AAnYLdIk~LldLtcq~VA~~IkGK 121 (345)
...|-+|+.-|.|..+.+|+++|..+++..+.+.
T Consensus 75 ~kel~El~~EA~fYlL~~Lv~~C~~~i~~~~~~~ 108 (230)
T KOG2716|consen 75 EKELKELLREAEFYLLDGLVELCQSAIARLIRGY 108 (230)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccCc
Confidence 6789999999999999999999999999988776
No 14
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=83.19 E-value=0.97 Score=42.11 Aligned_cols=37 Identities=32% Similarity=0.589 Sum_probs=30.1
Q ss_pred hhhhc--CCcchHHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCC
Q 019142 96 SAADS--LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLT 137 (345)
Q Consensus 96 ~AAnY--LdIk~LldLtcq~VA~~IkGKS~EEIRe~FgI~nD~T 137 (345)
.|||. =+|--|.+++|+.. |.-+.+||..||||+||.
T Consensus 162 eaanrwtDnI~il~dy~~rkf-----~~e~nqi~~~fgIPed~d 200 (203)
T KOG3433|consen 162 EAANRWTDNIFILIDYLYRKF-----GLEPNQIRKEFGIPEDFD 200 (203)
T ss_pred HHHhhhhhhHHHHHHHHHHhc-----CCCHHHHhHhcCCCcccc
Confidence 44443 37888888888776 899999999999999984
No 15
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=82.88 E-value=0.94 Score=42.11 Aligned_cols=32 Identities=34% Similarity=0.662 Sum_probs=26.7
Q ss_pred CcchHHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCCh
Q 019142 102 QLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTE 138 (345)
Q Consensus 102 dIk~LldLtcq~VA~~IkGKS~EEIRe~FgI~nD~Tp 138 (345)
+|.-|.++.|+.. +.-|+|||+.||||+||..
T Consensus 174 nI~ilidy~c~kf-----~~~~~qir~~fgIPedld~ 205 (209)
T COG5124 174 NIEILIDYLCKKF-----FLKPEQIRKEFGIPEDLDE 205 (209)
T ss_pred hHHHHHHHHHHHc-----CCCHHHHHHhcCCCcchhh
Confidence 6777888777765 8899999999999998743
No 16
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=77.79 E-value=4.8 Score=41.84 Aligned_cols=97 Identities=15% Similarity=0.124 Sum_probs=69.8
Q ss_pred CCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCC---ccccCCCCCCHHHHHHHHHHHhhcCCCCCCcccccccccccccc
Q 019142 10 TDGSIQQVEEEVAMFCPMICREIIQTGMGSSKN---YAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEKFIRM 86 (345)
Q Consensus 10 SDG~iFeVs~~aA~qS~tIr~mLed~g~g~~~~---~~IPLP~nVss~iLkkIIEYCe~Hk~~~~s~~eik~WD~eFLki 86 (345)
.=|....+..--+.||+++..|+...-.++..+ -.||=| +|+...|.-++-=+.+.. +.+
T Consensus 76 alg~eWrlHk~yL~QS~yf~smf~Gtw~es~~~iIqleI~Dp-~Id~~al~~a~gsLY~dE----------------veI 138 (488)
T KOG4682|consen 76 ALGFEWRLHKPYLFQSEYFKSMFSGTWKESSMNIIQLEIPDP-NIDVVALQVAFGSLYRDE----------------VEI 138 (488)
T ss_pred hccceeeeeeeeeeccHHHHHHhccccChhhCceEEEEcCCC-cccHHHHHHHHhhhhhhh----------------eec
Confidence 347778888888889999998876332211111 246666 799988887765443321 346
Q ss_pred ChHHHHHHHhhhhcCCcchHHHHHHHHHHHHHhCCCH
Q 019142 87 DTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTP 123 (345)
Q Consensus 87 D~~~LfELI~AAnYLdIk~LldLtcq~VA~~IkGKS~ 123 (345)
+.+.+..++.||.+|...+|++=|...+-..|+-||+
T Consensus 139 ~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta 175 (488)
T KOG4682|consen 139 KLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTA 175 (488)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhh
Confidence 8889999999999999999999999887666665554
No 17
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=75.69 E-value=3.2 Score=46.55 Aligned_cols=109 Identities=19% Similarity=0.191 Sum_probs=67.4
Q ss_pred EEEeCCCCEEEecHHHHHH-cHHHHHHHhhcCCCCCCCccccCCCCCCHHHHHHHHHHHhhcCCCCCCcccccccccccc
Q 019142 6 WVQTTDGSIQQVEEEVAMF-CPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEKFI 84 (345)
Q Consensus 6 kL~SSDG~iFeVs~~aA~q-S~tIr~mLed~g~g~~~~~~IPLP~nVss~iLkkIIEYCe~Hk~~~~s~~eik~WD~eFL 84 (345)
.+...||.+|.....++.. +.++..|+...-++.+.-.+--.| +++..|+-|++|+.---. .+|+
T Consensus 714 ~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p--~~~e~m~ivLdylYs~d~------------~~~~ 779 (1267)
T KOG0783|consen 714 VIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSP--LTVEHMSIVLDYLYSDDK------------VELF 779 (1267)
T ss_pred EEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCc--chHHHHHHHHHHHHccch------------HHHH
Confidence 4455699988665544321 333333333221111111122233 679999999999763211 2233
Q ss_pred c--cChHHHHHHHhhhhcCCcchHHHHHHHHHHHHHhCCCHHHHHh
Q 019142 85 R--MDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRE 128 (345)
Q Consensus 85 k--iD~~~LfELI~AAnYLdIk~LldLtcq~VA~~IkGKS~EEIRe 128 (345)
+ ...+.+|+++..|+-|=|..|-++|-+.+-+.+.=|+.-++-+
T Consensus 780 k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~lle 825 (1267)
T KOG0783|consen 780 KDLKESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLE 825 (1267)
T ss_pred hccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHH
Confidence 2 2445689999999999999999999999988888887665544
No 18
>PF07928 Vps54: Vps54-like protein; InterPro: IPR012501 This family contains various proteins that are homologues of the yeast Vps54 protein, such as the rat homologue (Q9JMK8 from SWISSPROT), the human homologue (Q86YF7 from SWISSPROT), and the mouse homologue (Q8R3X1 from SWISSPROT). In yeast, Vps54 associates with Vps52 and Vps53 proteins to form a trimolecular complex that is involved in protein transport between Golgi, endosomal, and vacuolar compartments []. All Vps54 homologues contain a coiled coil region (not found in the region featured in this family) and multiple dileucine motifs []. ; GO: 0042147 retrograde transport, endosome to Golgi; PDB: 3N1E_B 3N1B_B.
Probab=70.64 E-value=3.9 Score=35.89 Aligned_cols=121 Identities=20% Similarity=0.294 Sum_probs=14.6
Q ss_pred CCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCccccCCCCCCHHHHHHHHHHHhhcCCCCCCccccccccccccccChHH
Q 019142 11 DGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEKFIRMDTKK 90 (345)
Q Consensus 11 DG~iFeVs~~aA~qS~tIr~mLed~g~g~~~~~~IPLP~nVss~iLkkIIEYCe~Hk~~~~s~~eik~WD~eFLkiD~~~ 90 (345)
||+.|.|...+.....+|.+.+.- ...+| .+.++++.++++|++... ..
T Consensus 1 d~e~f~vv~s~l~ll~~l~~Y~~~---------~~~~P-~~a~di~~~l~elLk~fN---------------------Sr 49 (135)
T PF07928_consen 1 DNEKFVVVGSALLLLKMLSDYLQL---------ASNFP-SLAPDILSRLLELLKLFN---------------------SR 49 (135)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCceecHHHHHHHHHHHHHHHHH---------HHHCc-hhHHHHHHHHHHHHHHHH---------------------HH
Confidence 678888888888777777765432 22466 578888888888865543 34
Q ss_pred HHHHHhhhhcCCcchHHHHHHHHHHHHHhCC-----CHHHHHhhcCCCCCCChHhhhccccccCCchHHHHHHHHHHHHH
Q 019142 91 LCELTSAADSLQLKPLVDLTSRALARIIEGK-----TPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIRLLNRLYARKR 165 (345)
Q Consensus 91 LfELI~AAnYLdIk~LldLtcq~VA~~IkGK-----S~EEIRe~FgI~nD~TpEEE~Ei~~~~~~~p~~~lln~l~~~~~ 165 (345)
.++|+..|--+..-+|-.++++.+|--...- -.-.||.+|.-- +++. ...++ -.|+.+.+.|+.++
T Consensus 50 ~~qlVLGAGA~~~agLK~IT~KhLALasq~L~~~~~lip~i~~~~~~~--~~~~-~~~~~------~~fd~v~~dy~~H~ 120 (135)
T PF07928_consen 50 CCQLVLGAGAMRSAGLKTITAKHLALASQSLSFIISLIPYIREFFERH--LPSK-QQSLL------REFDKVKRDYQDHQ 120 (135)
T ss_dssp -------------------------------------------------------HHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHhccchhhccCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcc-cchHH------HHHHHHHHHHHHHH
Confidence 6777777777777777777776665433221 133445444432 1111 11111 24666778888888
Q ss_pred HHHHHH
Q 019142 166 KELKER 171 (345)
Q Consensus 166 ~e~~~~ 171 (345)
.|+..+
T Consensus 121 ~eI~~K 126 (135)
T PF07928_consen 121 NEIFSK 126 (135)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 886544
No 19
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=67.97 E-value=2.5 Score=33.57 Aligned_cols=84 Identities=18% Similarity=0.188 Sum_probs=53.2
Q ss_pred CCCEEEecHHHHHH--cHHHHHHHhhc--CCCCCCCccccCCCCCCHHHHHHHHHHHhhcCCCCCCcccccccccccccc
Q 019142 11 DGSIQQVEEEVAMF--CPMICREIIQT--GMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEKFIRM 86 (345)
Q Consensus 11 DG~iFeVs~~aA~q--S~tIr~mLed~--g~g~~~~~~IPLP~nVss~iLkkIIEYCe~Hk~~~~s~~eik~WD~eFLki 86 (345)
-|+.|.+..+.+.. ...+..++... ....+....+=| +-++..++.|+.|++.. .. ++. .
T Consensus 6 GG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi--DRdp~~F~~IL~ylr~~-~~------l~~-------~ 69 (94)
T PF02214_consen 6 GGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI--DRDPELFEYILNYLRTG-GK------LPI-------P 69 (94)
T ss_dssp TTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE--SS-HHHHHHHHHHHHHT-SS------B----------
T ss_pred CCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe--ccChhhhhHHHHHHhhc-Cc------cCC-------C
Confidence 48999999999873 23555555532 111123455655 57999999999999984 11 110 1
Q ss_pred ChHHHHHHHhhhhcCCcchH-HHHH
Q 019142 87 DTKKLCELTSAADSLQLKPL-VDLT 110 (345)
Q Consensus 87 D~~~LfELI~AAnYLdIk~L-ldLt 110 (345)
+...+..|...|.|.+|..| ++.|
T Consensus 70 ~~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 70 DEICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred CchhHHHHHHHHHHcCCCccccCCC
Confidence 23346788999999999999 6644
No 20
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=67.95 E-value=8.5 Score=38.61 Aligned_cols=90 Identities=10% Similarity=0.112 Sum_probs=61.5
Q ss_pred CEEEecHHHHH-HcHHHHHHHhhcCCCCCCCccccCCCCCCHHHHHHHHHHHhhcCCCCCCccccccccccccccChHHH
Q 019142 13 SIQQVEEEVAM-FCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEKFIRMDTKKL 91 (345)
Q Consensus 13 ~iFeVs~~aA~-qS~tIr~mLed~g~g~~~~~~IPLP~nVss~iLkkIIEYCe~Hk~~~~s~~eik~WD~eFLkiD~~~L 91 (345)
+.|..+...+. .+++++..|...-.+.....+|+|.+.-+-.|++=++.|++... + .++.+.+
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~---------p-------~l~~~Nv 77 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEP---------P-------SLTPSNV 77 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCC---------C-------cCCcCcE
Confidence 56888888875 47888887743100112345566654567778888888877611 1 2355567
Q ss_pred HHHHhhhhcCCcchHHHHHHHHHHHHH
Q 019142 92 CELTSAADSLQLKPLVDLTSRALARII 118 (345)
Q Consensus 92 fELI~AAnYLdIk~LldLtcq~VA~~I 118 (345)
..|+..|+||+|++|++.|-.++...+
T Consensus 78 vsIliSS~FL~M~~Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 78 VSILISSEFLQMESLVEECLQYCHDHM 104 (317)
T ss_pred EEeEehhhhhccHHHHHHHHHHHHHhH
Confidence 788899999999999999988875543
No 21
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=62.84 E-value=44 Score=35.22 Aligned_cols=148 Identities=16% Similarity=0.215 Sum_probs=91.0
Q ss_pred EEEEeCCCCEEEecHHHH-HHcHHHHHHHhhcCCCCCCCccccCCCCCCHHHHHHHHHHHhhcCCC--CCC---------
Q 019142 5 IWVQTTDGSIQQVEEEVA-MFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVP--GRS--------- 72 (345)
Q Consensus 5 IkL~SSDG~iFeVs~~aA-~qS~tIr~mLed~g~g~~~~~~IPLP~nVss~iLkkIIEYCe~Hk~~--~~s--------- 72 (345)
|+++-.| ..|...+-++ .-|..++.+|- .|..++....|||. .-++..++.++.|..--+-. +..
T Consensus 47 Vtfvve~-~rfpAHRvILAaRs~yFRAlLY-gGm~Es~q~~ipLq-~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld~Ls 123 (620)
T KOG4350|consen 47 VTFVVED-TRFPAHRVILAARSSYFRALLY-GGMQESHQQLIPLQ-ETNSEAFRALLRYIYTGKIDLAGVEEDILLDYLS 123 (620)
T ss_pred eEEEEec-cccchhhhhHHHHHHHHHHHHh-hhhhhhhhcccccc-cccHHHHHHHHHHHhhcceecccchHHHHHHHHH
Confidence 4444444 5555555444 45889998764 35545557789996 57799999999998765532 100
Q ss_pred ----------ccccccccccccccChHHHHHHHhhhhcCCcchHHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCChHhhh
Q 019142 73 ----------NKERKMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKL 142 (345)
Q Consensus 73 ----------~~eik~WD~eFLkiD~~~LfELI~AAnYLdIk~LldLtcq~VA~~IkGKS~EEIRe~FgI~nD~TpEEE~ 142 (345)
...++++-.+. +..+.+|-++.||.+.+.+.|.++||..+ .+.+.++-.--+.. -++-+-..
T Consensus 124 lAh~Ygf~~Le~aiSeYl~~i--L~~~NvCmifdaA~ly~l~~Lt~~C~mfm-----DrnA~~lL~~~sFn-~LSk~sL~ 195 (620)
T KOG4350|consen 124 LAHRYGFIQLETAISEYLKEI--LKNENVCMIFDAAYLYQLTDLTDYCMMFM-----DRNADQLLEDPSFN-RLSKDSLK 195 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHHH--HcccceeeeeeHHHHhcchHHHHHHHHHH-----hcCHHhhhcCcchh-hhhHHHHH
Confidence 01122222222 34556788889999999999999999665 67777775422221 24444444
Q ss_pred cccc-ccCCchHHHHHHHHHHH
Q 019142 143 EPLN-NVTDDPRIRLLNRLYAR 163 (345)
Q Consensus 143 Ei~~-~~~~~p~~~lln~l~~~ 163 (345)
+++. .-+-.|-.+.++-+..=
T Consensus 196 e~l~RDsFfApE~~IFlAv~~W 217 (620)
T KOG4350|consen 196 ELLARDSFFAPELKIFLAVRSW 217 (620)
T ss_pred HHHhhhcccchHHHHHHHHHHH
Confidence 4433 23556777777766443
No 22
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=49.43 E-value=16 Score=33.77 Aligned_cols=42 Identities=24% Similarity=0.392 Sum_probs=31.0
Q ss_pred HHHHHhhhhcC--CcchHHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCC
Q 019142 91 LCELTSAADSL--QLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLT 137 (345)
Q Consensus 91 LfELI~AAnYL--dIk~LldLtcq~VA~~IkGKS~EEIRe~FgI~nD~T 137 (345)
+..+..||+.. +|-.|..++++. -|.+.++|++.||||+||.
T Consensus 144 ~~~~~~~anrwTDNI~~l~~~~~~k-----~~~~~~~i~k~f~Ip~d~d 187 (188)
T PF03962_consen 144 IKIAKEAANRWTDNIFSLKSYLKKK-----FGMDEEDIRKEFGIPEDFD 187 (188)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHh-----cCCCHHHHHHHcCCccccC
Confidence 34445566553 666777777664 3999999999999999974
No 23
>PLN03083 E3 UFM1-protein ligase 1 homolog; Provisional
Probab=48.06 E-value=8.6 Score=42.93 Aligned_cols=31 Identities=13% Similarity=0.253 Sum_probs=22.6
Q ss_pred HHHhHHHHHHHH-HhcCChhHHHHHHHhhccc
Q 019142 292 EELDREVEDFAR-RLNSDWPQRMQEILSLGQD 322 (345)
Q Consensus 292 ~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~ 322 (345)
++|-+++.+-.| -||..|.+|.++++...++
T Consensus 511 ~~ll~~lA~~l~p~l~~~~~~~~~~~~~~~~~ 542 (803)
T PLN03083 511 GSILKHLADHLRPMLINSLKERRKALFTENAE 542 (803)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 466777766554 5899999999998764433
No 24
>PF14384 DUF4415: Domain of unknown function (DUF4415)
Probab=40.67 E-value=24 Score=26.80 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=23.0
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHh
Q 019142 293 ELDREVEDFARRLNSDWPQRMQEILS 318 (345)
Q Consensus 293 ~~~~~~~~f~~~~~~~~~~~~~~~~~ 318 (345)
.||.+|-+|.+..-..|.-||+++|.
T Consensus 34 rld~dVl~~fka~G~gyQtriN~~Lr 59 (62)
T PF14384_consen 34 RLDPDVLEWFKAQGKGYQTRINEALR 59 (62)
T ss_pred EeCHHHHHHHHHHChhHHHHHHHHHH
Confidence 46788889999999999999999985
No 25
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=38.69 E-value=49 Score=24.35 Aligned_cols=39 Identities=36% Similarity=0.423 Sum_probs=26.9
Q ss_pred hCCCHHHHHhhcCCCCCCChHhhhccccccCCchHHHHHHHHHHHHHHHHHHH
Q 019142 119 EGKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIRLLNRLYARKRKELKER 171 (345)
Q Consensus 119 kGKS~EEIRe~FgI~nD~TpEEE~Ei~~~~~~~p~~~lln~l~~~~~~e~~~~ 171 (345)
-|-|.+||++++.++++ ++|.......+.+.+++++.++
T Consensus 13 lGfsL~eI~~~l~l~~~--------------~~~~~~~~~~~l~~~~~~i~~~ 51 (65)
T PF09278_consen 13 LGFSLEEIRELLELYDQ--------------GDPPCADRRALLEEKLEEIEEQ 51 (65)
T ss_dssp TT--HHHHHHHHHHCCS--------------HCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHhccCC--------------CCCCHHHHHHHHHHHHHHHHHH
Confidence 38999999999988664 1444555567777788887766
No 26
>PF15063 TC1: Thyroid cancer protein 1
Probab=36.37 E-value=22 Score=28.92 Aligned_cols=42 Identities=24% Similarity=0.391 Sum_probs=38.6
Q ss_pred HHHHHHHhCCCHHHHHhhcCCCCCCChHhhhccccccCCchH
Q 019142 112 RALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPR 153 (345)
Q Consensus 112 q~VA~~IkGKS~EEIRe~FgI~nD~TpEEE~Ei~~~~~~~p~ 153 (345)
+++|+++.+-.-++|+..|.-..|.-.||..++.....+||.
T Consensus 28 kasaNIFe~vn~~qlqrLF~~sGD~kAEeRA~iI~~~~~d~e 69 (79)
T PF15063_consen 28 KASANIFENVNLDQLQRLFQKSGDKKAEERARIIWECAQDPE 69 (79)
T ss_pred hhhhhhhhccCHHHHHHHHHHccchhHHHHHHHHHhhCCCHH
Confidence 568899999999999999999999999999999999888875
No 27
>PRK05365 malonic semialdehyde reductase; Provisional
Probab=35.03 E-value=26 Score=31.48 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=27.5
Q ss_pred HHhhhhcCCcchHHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCC
Q 019142 94 LTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLT 137 (345)
Q Consensus 94 LI~AAnYLdIk~LldLtcq~VA~~IkGKS~EEIRe~FgI~nD~T 137 (345)
|++||..|++.. .+|.|-..+.+++.|||++++.
T Consensus 131 l~LaA~~~Glgs----------~~~~g~~~~~v~~~l~ip~~~~ 164 (195)
T PRK05365 131 LILAARALGLDA----------GPMSGFDAAAVDAEFFAGTTWK 164 (195)
T ss_pred HHHHHHHcCCcc----------CCccccCHHHHHHHhCCCCCee
Confidence 889999998876 2456778899999999987653
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=33.68 E-value=37 Score=38.82 Aligned_cols=7 Identities=14% Similarity=0.453 Sum_probs=4.5
Q ss_pred HHhhhhh
Q 019142 190 DDLLSFI 196 (345)
Q Consensus 190 d~ll~fi 196 (345)
.+.+.|+
T Consensus 882 k~~~~~~ 888 (1018)
T KOG2002|consen 882 KEILKLP 888 (1018)
T ss_pred HHHHhcc
Confidence 4566776
No 29
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=32.75 E-value=1.2e+02 Score=31.91 Aligned_cols=102 Identities=14% Similarity=0.050 Sum_probs=69.5
Q ss_pred EEEecHHHHHHcHHHHHHHhhcCCCCCCCc---cccCCCCCCHHHHHHHHHHHhhcCCCCC-------------------
Q 019142 14 IQQVEEEVAMFCPMICREIIQTGMGSSKNY---AISLPQRVNPAIFGLVLDYCRFHQVPGR------------------- 71 (345)
Q Consensus 14 iFeVs~~aA~qS~tIr~mLed~g~g~~~~~---~IPLP~nVss~iLkkIIEYCe~Hk~~~~------------------- 71 (345)
...+...++.-+.+.+.|+...-...+.+. ...|| +..+.+.+.++.|+.-|+.+-+
T Consensus 302 RyP~hla~i~R~eyfk~mf~g~f~e~s~n~~~p~lslp-~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~~d 380 (516)
T KOG0511|consen 302 RYPAHLARILRVEYFKSMFVGDFIESSVNDTRPGLSLP-SLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALADD 380 (516)
T ss_pred cccHHHHHHHHHHHHHHHhccchhhhcCCccccccccc-hHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhhhh
Confidence 366677777777888887764422222233 34578 7889999999999998887420
Q ss_pred ------CccccccccccccccChHHHHHHHhhhhcCCcchHHHHHHHHHHHHHh
Q 019142 72 ------SNKERKMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIE 119 (345)
Q Consensus 72 ------s~~eik~WD~eFLkiD~~~LfELI~AAnYLdIk~LldLtcq~VA~~Ik 119 (345)
....+..| .+| +|.-.+++++.-|.-+....|-..+...+|+.+.
T Consensus 381 r~Lkt~as~~itq~-~e~--id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~ 431 (516)
T KOG0511|consen 381 RLLKTAASAEITQW-LEL--IDMYGVLDILEYCWDLVACRLEQFAETHEARHLL 431 (516)
T ss_pred hhhhhhhhHHHHHH-HHH--HHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 01123344 222 3445588899999999999999999999888654
No 30
>cd02148 Nitroreductase_5 Nitroreductase-like family 5. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=31.27 E-value=30 Score=30.72 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=27.5
Q ss_pred HHhhhhcCCcchHHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCC
Q 019142 94 LTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLT 137 (345)
Q Consensus 94 LI~AAnYLdIk~LldLtcq~VA~~IkGKS~EEIRe~FgI~nD~T 137 (345)
|++||..|++.. .+|.|-..+++++.|||++++.
T Consensus 124 l~LaA~~lGlgs----------~~~~g~d~~~~~~~L~lp~~~~ 157 (185)
T cd02148 124 FILAARALGLDA----------GPMSGFDAAAVDAEFFADTRWR 157 (185)
T ss_pred HHHHHHHcCCCc----------CCCcccCHHHHHHHhCCCCCeE
Confidence 888888888875 3556778899999999987663
No 31
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=29.21 E-value=54 Score=28.76 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=15.1
Q ss_pred HHhCCCHHHHHhhcCCCCCCChHhhhcc
Q 019142 117 IIEGKTPEEIRETFHLPDDLTEEEKLEP 144 (345)
Q Consensus 117 ~IkGKS~EEIRe~FgI~nD~TpEEE~Ei 144 (345)
...|+|.+|-++++|++..+++||-.+-
T Consensus 51 ~~~~Mtl~EA~~ILnv~~~~~~eeI~k~ 78 (127)
T PF03656_consen 51 NSKGMTLDEARQILNVKEELSREEIQKR 78 (127)
T ss_dssp ------HHHHHHHHT--G--SHHHHHHH
T ss_pred hcCCCCHHHHHHHcCCCCccCHHHHHHH
Confidence 4569999999999999998888775544
No 32
>PF05553 DUF761: Cotton fibre expressed protein; InterPro: IPR008480 This family consists of several plant proteins of unknown function. Three of the sequences from Gossypium hirsutum (Upland cotton) in this family are described as G. hirsutum fibre expressed proteins []. The remaining sequences, found in Arabidopsis thaliana, are uncharacterised.
Probab=28.90 E-value=52 Score=23.19 Aligned_cols=26 Identities=35% Similarity=0.608 Sum_probs=20.3
Q ss_pred HHHhHHHHHHHHHhcCChhHHHHHHHhh
Q 019142 292 EELDREVEDFARRLNSDWPQRMQEILSL 319 (345)
Q Consensus 292 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 319 (345)
++||+-+|+|.++.+-.| |||..-|+
T Consensus 3 ~evd~rAe~FI~~f~~ql--rlqr~~S~ 28 (38)
T PF05553_consen 3 DEVDRRAEEFIAKFREQL--RLQRQESL 28 (38)
T ss_pred hHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 578999999999999887 66644443
No 33
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.14 E-value=22 Score=38.66 Aligned_cols=40 Identities=15% Similarity=0.033 Sum_probs=17.8
Q ss_pred CcccccCCCCCCCC---ChHHHHHHhHHHHHHHHHhcCChhHHH
Q 019142 273 PKMEFDDGEIDDDL---DPAMKEELDREVEDFARRLNSDWPQRM 313 (345)
Q Consensus 273 ~~~~~~~~~~~~~~---d~~~~~~~~~~~~~f~~~~~~~~~~~~ 313 (345)
|-+.+.+.+.++.. +-.+-.+.-+=+-+ -+.||-+-+=+.
T Consensus 150 ~~v~~i~~~~~~~~~~l~r~l~~k~~k~~v~-~~~lnpdtE~k~ 192 (665)
T KOG2422|consen 150 DWVLEIDLKSDPLFTELPRSLGSKSCKLFVD-FKKLNPDTEFKL 192 (665)
T ss_pred hhHHHHhhhcccccCccchhHHHHHHHHHHh-hhccCCCchhhh
Confidence 34556665555433 32222233222322 256777655433
No 34
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=24.30 E-value=1.1e+02 Score=30.08 Aligned_cols=83 Identities=19% Similarity=0.190 Sum_probs=55.7
Q ss_pred CCCEEEecHHH--HHH-cHHHHHHHhhcCCC--CCCCccccCCCCCCHHHHHHHHHHHhhcCCCCCCccccccccccccc
Q 019142 11 DGSIQQVEEEV--AMF-CPMICREIIQTGMG--SSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEKFIR 85 (345)
Q Consensus 11 DG~iFeVs~~a--A~q-S~tIr~mLed~g~g--~~~~~~IPLP~nVss~iLkkIIEYCe~Hk~~~~s~~eik~WD~eFLk 85 (345)
.|+.|.-..+. .+. -.++..|+.+.|.+ .++...+-| +-++.-++-|+.|+++-+-+ .
T Consensus 16 gGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI--DRsp~yFepIlNyLr~Gq~~---------------~ 78 (302)
T KOG1665|consen 16 GGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI--DRSPKYFEPILNYLRDGQIP---------------S 78 (302)
T ss_pred CCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE--ccCchhhHHHHHHHhcCcee---------------e
Confidence 46666443333 332 34666778776643 234455666 47899999999999886543 1
Q ss_pred cChHHHHHHHhhhhcCCcchHHHHH
Q 019142 86 MDTKKLCELTSAADSLQLKPLVDLT 110 (345)
Q Consensus 86 iD~~~LfELI~AAnYLdIk~LldLt 110 (345)
...-.+.+++.+|.|++|-+|++-.
T Consensus 79 ~s~i~~lgvLeeArff~i~sL~~hl 103 (302)
T KOG1665|consen 79 LSDIDCLGVLEEARFFQILSLKDHL 103 (302)
T ss_pred cCCccHHHHHHHhhHHhhHhHHhHH
Confidence 2333488999999999999998743
No 35
>PF12112 DUF3579: Protein of unknown function (DUF3579); InterPro: IPR021969 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 98 to 126 amino acids in length. This protein has a conserved FRP sequence motif. ; PDB: 2L9D_A.
Probab=23.91 E-value=44 Score=27.95 Aligned_cols=14 Identities=36% Similarity=0.674 Sum_probs=11.2
Q ss_pred CChhHHHHHHHhhc
Q 019142 307 SDWPQRMQEILSLG 320 (345)
Q Consensus 307 ~~~~~~~~~~~~~~ 320 (345)
|||.||+-.+||.-
T Consensus 23 SDWaERL~gvla~F 36 (92)
T PF12112_consen 23 SDWAERLCGVLASF 36 (92)
T ss_dssp TTHHHHHHHTT-EE
T ss_pred ccHHHHHHHHHHcc
Confidence 89999999887763
No 36
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=22.97 E-value=1.5e+02 Score=25.60 Aligned_cols=20 Identities=20% Similarity=0.479 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHHHhhcCCC
Q 019142 50 RVNPAIFGLVLDYCRFHQVP 69 (345)
Q Consensus 50 nVss~iLkkIIEYCe~Hk~~ 69 (345)
.|+..+|..+++||..|..|
T Consensus 60 ~i~~~~~~~t~~wL~k~~ip 79 (126)
T TIGR01689 60 KINIHTLPIIILWLNQHNVP 79 (126)
T ss_pred ccchhhHHHHHHHHHHcCCC
Confidence 37888999999999999876
No 37
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=22.04 E-value=2.4e+02 Score=23.35 Aligned_cols=71 Identities=24% Similarity=0.241 Sum_probs=43.3
Q ss_pred HHHhhhhcCCcch-----HHHHHHHHHHHHHh--CCCHHHHHhhcCCCCCCChHhhhccccccCCchHHHHHHHHHHH
Q 019142 93 ELTSAADSLQLKP-----LVDLTSRALARIIE--GKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIRLLNRLYAR 163 (345)
Q Consensus 93 ELI~AAnYLdIk~-----LldLtcq~VA~~Ik--GKS~EEIRe~FgI~nD~TpEEE~Ei~~~~~~~p~~~lln~l~~~ 163 (345)
.|+.||-..+|+. |+--++.-.|.++. +++|+++++..--|.-.|.+--....+....+-+.+.+..-+.|
T Consensus 26 al~~a~v~~Gl~~~~A~~lv~~t~~G~a~ll~~~~~~~~~l~~~v~tPgG~T~~gl~~L~~~~~~~~~~~a~~aa~~R 103 (107)
T PF14748_consen 26 ALADAAVAQGLPREEARKLVAQTFIGAAKLLEESGRSPAELRDEVTTPGGTTIAGLEVLEKGGLRAAIMEALEAAVER 103 (107)
T ss_dssp HHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHCSS-HHHHHHHHS-TTSHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHccCCCHHHHhhhccCCCCcHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 3445555555543 44444455566666 67999999999999988888777776665555555555554443
No 38
>PRK11053 dihydropteridine reductase; Provisional
Probab=21.59 E-value=72 Score=29.06 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=25.1
Q ss_pred HHHHHhhhhcCCcchHHHHHHHHHHHHHhCCCHHHHHhhcCCCC
Q 019142 91 LCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPD 134 (345)
Q Consensus 91 LfELI~AAnYLdIk~LldLtcq~VA~~IkGKS~EEIRe~FgI~n 134 (345)
+-.|++||..|++..- .|.|-.++.+++.||||+
T Consensus 147 ~~~lmLaA~~~Glgs~----------~i~g~~~~~v~~~l~ip~ 180 (217)
T PRK11053 147 LGNLLLGAAALGIDAT----------PIEGFDAAILDAEFGLRE 180 (217)
T ss_pred HHHHHHHHHHcCCCCC----------CcCCcCHHHHHHHhCCCC
Confidence 3466777777776643 456778999999999984
No 39
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=20.61 E-value=72 Score=22.59 Aligned_cols=23 Identities=30% Similarity=0.673 Sum_probs=20.1
Q ss_pred HHHHHHhHHHHHHHHHhcCChhH
Q 019142 289 AMKEELDREVEDFARRLNSDWPQ 311 (345)
Q Consensus 289 ~~~~~~~~~~~~f~~~~~~~~~~ 311 (345)
-++.+++.|++.|..+-|..|-|
T Consensus 30 ~~~~~~~~em~~fk~~s~d~W~~ 52 (53)
T PF01484_consen 30 NFQSELDDEMEEFKEISDDAWNE 52 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999954
Done!